BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044812
         (547 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/509 (67%), Positives = 410/509 (80%), Gaps = 10/509 (1%)

Query: 9   TFALVTSRNYTSA-------TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
           T  L+ SR Y SA        +   L  S TH+SLKLT+QSHS+ILSLG   N  ++TKL
Sbjct: 5   TCTLIPSRYYASAFEFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKL 64

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           I AYA+C  P  S+LVF+S+QHK+V+L+NSLINGY KN  +NEA +LF+ M  S+V PDD
Sbjct: 65  IFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDD 124

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
           FTL+T+SK+S E+  L  G  IHG SI+IGFV D ++ANS+MSMY KCG F E   +FDE
Sbjct: 125 FTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDE 184

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           M  RN GSWNV I+G+A SG+   +V  RRVFD+MK RNV++WTAMINGYV+NGD DEAL
Sbjct: 185 MTIRNSGSWNVLIAGYAVSGN---LVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEAL 241

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            LF +MQ+ D IEPN+VSLVSVLP CSS  GL  G+QIHGFA+RKELN++VSLCNALIDM
Sbjct: 242 SLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDM 301

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           YSKCGSLD ARRVFED S  KDAI+WSS++SGYGLHGKG EA+LLY+KM+  G +PD+IT
Sbjct: 302 YSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMIT 361

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
            VG+LSAC RSGL+NEGL IY+SVIN Y I+PT EI AC+VDMLGRAGQLD ALDFIK M
Sbjct: 362 TVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAM 421

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
           PVEP PS+WGALVS S++HG+ EMQ+LAY+ LIQLEPENPSNYVS+SNLYASSRRWDAVA
Sbjct: 422 PVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVA 481

Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           E+R MMKD+ L+K PGCSWISI+ KTHCF
Sbjct: 482 EVRRMMKDKRLRKVPGCSWISINNKTHCF 510


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 297/534 (55%), Positives = 369/534 (69%), Gaps = 42/534 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+    +VS+   +L   K  H + +  G +S+  V+  +++ Y  CG   +S+ VF+ +
Sbjct: 126 TLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEM 185

Query: 82  QHKDVYLYNSLINGYVKNHGHN---EALELFSNMYYSNVSPDDFTLATISKL-SGEIKDL 137
             ++   +N LI GY  +   N   E  E    M    V PD +T++++  L  G++   
Sbjct: 186 TIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKW 245

Query: 138 NVGMLIHGLSIK----IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           + G  +H   +K    +G   DV L   L+ MY +  K                      
Sbjct: 246 DYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNK---------------------- 283

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                       VV  RRVFD+MK RNV++WTAMINGYV+NGD DEAL LF +MQ+ D +
Sbjct: 284 ------------VVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGV 331

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           EPN+VSLVSVLP CSS  GL  G+QIHGFA+RKELN++VSLCNALIDMYSKCGSLD ARR
Sbjct: 332 EPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARR 391

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VFED S  KDAI+WSS++SGYGLHGKG EA+LLY+KM+  G +PD+IT VG+LSACGRSG
Sbjct: 392 VFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSG 451

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
           L+NEGL IY+SVIN Y I+PT EICAC+VDMLGRAGQLDRALDFIK +PVEP PS+WGAL
Sbjct: 452 LVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGAL 511

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           VS S++HG+ EMQ+LAY+ LIQLEP+NPSNYVS+SNLYASSRRWDAVAE+R MMKD+ L+
Sbjct: 512 VSCSIIHGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLR 571

Query: 494 KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
           K PGCSWISI+ KTHCF VADKAHP S SIY MLDDL+L M  A  SPHL   T
Sbjct: 572 KVPGCSWISINNKTHCFYVADKAHPSSTSIYNMLDDLLLTMNDAICSPHLETST 625



 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 176/460 (38%), Positives = 258/460 (56%), Gaps = 49/460 (10%)

Query: 10  FALVTSRNYTSA-------TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           F L+ SR Y SA        +   L  S TH+SLKLT+QSHS+ILSLG   N F++TKLI
Sbjct: 6   FTLIPSRYYASAFEFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSFLATKLI 65

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
            AYA+C  P  S+LVF+S+QHK+V+L+NSLING VKN  +NEA +LF+ M  S+V PDDF
Sbjct: 66  FAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDF 125

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           TL+T+SK+S E+  L  G  IHG SI+ GFV D ++ANS+MSMY KCG F E   +FDEM
Sbjct: 126 TLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEM 185

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
             RN GSWNV I+G+A SG                                N +  E   
Sbjct: 186 TIRNSGSWNVLIAGYAVSG--------------------------------NCNFREETW 213

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIG-LSGGKQIHGFAIRKE----LNHDVSLCNA 297
            F++    D + P+  ++ S+LP C   +G    G+++H + ++ E    L+ DV L   
Sbjct: 214 EFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCC 273

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSK 356
           LIDMYS+   +   RRVF D    ++  +W+++++GY  +G   EA+ L+  M V  G +
Sbjct: 274 LIDMYSRSNKVVVGRRVF-DRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVE 332

Query: 357 PDIITIVGVLSACGR-SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
           P+ +++V VL AC   SGL++ G +I+   +    +     +C  ++DM  + G LD A 
Sbjct: 333 PNRVSLVSVLPACSSFSGLLS-GRQIHGFAVRK-ELNNEVSLCNALIDMYSKCGSLDSAR 390

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
              +   +      W +++S   +HG  +   L Y  ++Q
Sbjct: 391 RVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQ 430



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 138/269 (51%), Gaps = 17/269 (6%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           SR VFD ++ +NV+ W ++ING V+N   +EA  LF +M   D + P+  +L ++    S
Sbjct: 77  SRLVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSD-VLPDDFTLSTLSKVSS 135

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            L  L  GK IHG +IR     D  + N+++ MY KCG+ D +R+VF++ +  +++ +W+
Sbjct: 136 ELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTI-RNSGSWN 194

Query: 329 SIVSGYGLHGKGH---EAVLLYNKMVCLGSKPDIITIVGVLSAC-GRSGLINEGLEIYNS 384
            +++GY + G  +   E      +M     +PD  TI  +L  C G  G  + G E++  
Sbjct: 195 VLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCY 254

Query: 385 VINTYRI---KPTTEICACVVDMLGRAGQL---DRALDFIKTMPVEPSPSIWGALVSASV 438
           ++    +        +  C++DM  R+ ++    R  D +K   V      W A+++  V
Sbjct: 255 IVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFS----WTAMINGYV 310

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
            +G+S+     ++ +  ++   P N VSL
Sbjct: 311 ENGDSDEALSLFRDMQVIDGVEP-NRVSL 338


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/534 (55%), Positives = 366/534 (68%), Gaps = 42/534 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+    +VS+   +L   K  H + + +G +S+  V+  +++ Y  CG   +S+ VF+ +
Sbjct: 126 TLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEM 185

Query: 82  QHKDVYLYNSLINGYVKNHGHN---EALELFSNMYYSNVSPDDFTLATISKL-SGEIKDL 137
             ++   +N LI GY  +   N   E  E    M    V PD +T++++  L  G+    
Sbjct: 186 TIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKW 245

Query: 138 NVGMLIHGLSIK----IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           + G  +H   +K    +G   DV L   L+ MY +  K                      
Sbjct: 246 DYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNK---------------------- 283

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                       VV  RRVFD+MK RNV++WTAMINGYV+NGD DEAL LF +MQ+ D I
Sbjct: 284 ------------VVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGI 331

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           EPN+VSLVSVLP CSS  GL  G+QIHGFA+RKELN++VSLCNALIDMYSKCGSLD ARR
Sbjct: 332 EPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARR 391

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VFED S  KDAI+WSS++SGYGLHGKG EA+LLY+KM+  G +PD+IT VG+LSAC RSG
Sbjct: 392 VFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSG 451

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
           L+NEGL IY+SVIN Y I+PT EI AC+VDMLGRAGQLD ALDFIK MPVEP PS+WGAL
Sbjct: 452 LVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGAL 511

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           VS S++HG+ EMQ+LAY+ LIQLEPENPSNYVS+SNLYASSRRWDAVAE+R MMKD+ L+
Sbjct: 512 VSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLR 571

Query: 494 KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
           K PGCSWISI+ KTHCF VADKAHP + SIY MLDDL+L M  A  SPHL   T
Sbjct: 572 KVPGCSWISINNKTHCFYVADKAHPSATSIYNMLDDLLLTMNDAICSPHLETST 625



 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 257/461 (55%), Gaps = 49/461 (10%)

Query: 9   TFALVTSRNYTSA-------TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
           T  L+ SR Y SA        +   L  S TH+SLKLT+QSHS+ILSLG   N  ++TKL
Sbjct: 5   TCTLIPSRYYASAFEFDPSLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKL 64

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           I AYA+C  P  S+LVF+S+QHK+V+L+NSLINGY KN  +NEA +LF+ M  S+V PDD
Sbjct: 65  IFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDD 124

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
           FTL+T+SK+S E+  L  G  IHG SI+IGFV D ++ANS+MSMY KCG F E   +FDE
Sbjct: 125 FTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDE 184

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           M  RN GSWNV I+G+A SG                                N +  E  
Sbjct: 185 MTIRNSGSWNVLIAGYAVSG--------------------------------NCNFREET 212

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG-LSGGKQIHGFAIRKE----LNHDVSLCN 296
             F++    D + P+  ++ S+LP C    G    G+++H + ++ E    L+ DV L  
Sbjct: 213 WEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGC 272

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGS 355
            LIDMYS+   +   RRVF D    ++  +W+++++GY  +G   EA+ L+  M V  G 
Sbjct: 273 CLIDMYSRSNKVVVGRRVF-DRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGI 331

Query: 356 KPDIITIVGVLSACGR-SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
           +P+ +++V VL AC   SGL++ G +I+   +    +     +C  ++DM  + G LD A
Sbjct: 332 EPNRVSLVSVLPACSSFSGLLS-GRQIHGFAVRK-ELNNEVSLCNALIDMYSKCGSLDSA 389

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
               +   +      W +++S   +HG  +   L Y  ++Q
Sbjct: 390 RRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQ 430



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 138/269 (51%), Gaps = 17/269 (6%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           SR VFD ++ +NV+ W ++INGY +N   +EA  LF +M   D + P+  +L ++    S
Sbjct: 77  SRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSD-VLPDDFTLSTLSKVSS 135

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            L  L  GK IHG +IR     D  + N+++ MY KCG+ + +R+VF++ +  +++ +W+
Sbjct: 136 ELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTI-RNSGSWN 194

Query: 329 SIVSGYGLHGKGH---EAVLLYNKMVCLGSKPDIITIVGVLSAC-GRSGLINEGLEIYNS 384
            +++GY + G  +   E      +M     +PD  TI  +L  C G  G  + G E++  
Sbjct: 195 VLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCY 254

Query: 385 VINTYRI---KPTTEICACVVDMLGRAGQL---DRALDFIKTMPVEPSPSIWGALVSASV 438
           ++    +        +  C++DM  R+ ++    R  D +K   V      W A+++  V
Sbjct: 255 IVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFS----WTAMINGYV 310

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
            +G+S+     ++ +  ++   P N VSL
Sbjct: 311 ENGDSDEALSLFRDMQVIDGIEP-NRVSL 338


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 290/539 (53%), Positives = 372/539 (69%), Gaps = 45/539 (8%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           +YT AT+    +V      L   K  H + L  G + +  V+  L++ Y+ CG   +   
Sbjct: 128 DYTLATMS---KVCHEIGDLNAGKLIHGKSLKTGFVLDVIVANSLMSMYSKCGGFGECLK 184

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHN---EALELFSNMYYSNVSPDDFTLATISKL-SG 132
           +F+ +  ++V  +N +++GY  +   N   E      +M    + PD FT++++  L +G
Sbjct: 185 LFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKDMQIEGLKPDAFTVSSLLTLCNG 244

Query: 133 EIKDLNVGMLIHGLSIKIGFVV----DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
            +   + G  +HG  ++I   V    +V L   L+ MY +  +              +VG
Sbjct: 245 HMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMYSRSNRV-------------DVG 291

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
                                RRVFD+M+ RNVYAWTAMING+VQNG L+E LVLF EMQ
Sbjct: 292 ---------------------RRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQ 330

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
           ++D +EPNKVSLVSVLP CS++ GL+G KQIHG+AIRK+ N+DVSLCNALIDMYSKCGSL
Sbjct: 331 VRDGVEPNKVSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSL 390

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
           D A++VFE  SF +D I+WSS++SGYGLHGKG EAV +YNKM+ LG+KPD+ITIVGVLSA
Sbjct: 391 DHAKQVFEFGSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSA 450

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
           C R+GL++EGL IY S IN YRIKPT EICACVVDMLGR+GQL +ALD+IKTMP+EPSPS
Sbjct: 451 CSRAGLVDEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPS 510

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
           +WGA+VSAS++HGNSEMQDLAY+ L+QLEPENPSNYVSLSNL+ASSRRWD V+E+RTMMK
Sbjct: 511 VWGAVVSASIIHGNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASSRRWDVVSEVRTMMK 570

Query: 489 DRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
           DR L K+PGCSWISI+  TH F  ADK HPCS SIYE+L  LIL+M+G A S      T
Sbjct: 571 DRCLTKTPGCSWISINNTTHFFYAADKLHPCSKSIYELLGGLILLMKGPAVSHDFENFT 629



 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 192/495 (38%), Positives = 284/495 (57%), Gaps = 49/495 (9%)

Query: 1   MILSSARNTFALVTSRNYTSAT-------VQHFLQVSATHRSLKLTKQSHSQILSLGHIS 53
           M L S     +L +SRNY  AT       +   L++S TH+SLKLT+Q H++ILSLG   
Sbjct: 1   MTLFSVWKAVSLRSSRNYCYATPVSSAENLLDLLRLSLTHKSLKLTQQCHARILSLGFTQ 60

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           NPF++TKLI+AYA+ G P  S+LVF+S+  K VYL+NSLING+VKN  +NEA   F  M 
Sbjct: 61  NPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLINGFVKNRAYNEAFGWFYQMC 120

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
              V  DD+TLAT+SK+  EI DLN G LIHG S+K GFV+DVI+ANSLMSMY KCG F 
Sbjct: 121 CRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLDVIVANSLMSMYSKCGGFG 180

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
           ECL LFDEMP+RNVGSWNV +SG+A SGD        R FD+            ++G+V+
Sbjct: 181 ECLKLFDEMPERNVGSWNVILSGYADSGD--------RNFDK-----------EVSGFVK 221

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG-GKQIHGFAIRKEL---- 288
                       +MQ++  ++P+  ++ S+L  C+  +G    G+++HGF +R EL    
Sbjct: 222 ------------DMQIEG-LKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGS 268

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
             +V L   LIDMYS+   +D  RRVF D    ++   W+++++G+  +G   E ++L++
Sbjct: 269 GTEVHLGCCLIDMYSRSNRVDVGRRVF-DRMECRNVYAWTAMINGHVQNGALEEGLVLFH 327

Query: 349 KM-VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
           +M V  G +P+ +++V VL AC     +    +I+   I   +      +C  ++DM  +
Sbjct: 328 EMQVRDGVEPNKVSLVSVLPACSAVAGLTGVKQIHGYAIRK-QFNNDVSLCNALIDMYSK 386

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
            G LD A    +       P  W +++S   +HG  E     Y  ++QL   N  + +++
Sbjct: 387 CGSLDHAKQVFEFGSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQL--GNKPDMITI 444

Query: 468 SNLYASSRRWDAVAE 482
             + ++  R   V E
Sbjct: 445 VGVLSACSRAGLVDE 459


>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 279/533 (52%), Positives = 350/533 (65%), Gaps = 47/533 (8%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           +YT ATV    +V      L   K  H + + +G +S+  V   L++ Y  CG+   +  
Sbjct: 129 DYTLATV---FKVFGELEDLVSGKLIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVK 185

Query: 77  VFNSIQHKDVYLYNSLINGYVKNH-----GHNEALELFSNMYYSNVSPDDFTLATISKLS 131
           VF+   H++V  +N +I+G           H++    F  M       D FT+A++  + 
Sbjct: 186 VFDETPHRNVGSFNVVISGCAALENCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVC 245

Query: 132 -GEIKDLNVGMLIHGLSIKIGFVV----DVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
            G+    + G  +H   +K G  +    DV L +SL+ MY +  K               
Sbjct: 246 CGDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLIDMYSRSKK--------------- 290

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
                              VV  RRVFDQMK RNVY WTAMINGYVQNG  D+ALVL   
Sbjct: 291 -------------------VVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRA 331

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           MQ+KD I PNKVSL+S LP C  L GL GGKQIHGF+I+ ELN DVSLCNALIDMYSKCG
Sbjct: 332 MQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCG 391

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
           SLD ARR FE SS+ KDAITWSS++S YGLHG+G EA++ Y KM+  G KPD+IT+VGVL
Sbjct: 392 SLDYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVL 451

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           SAC +SGL++EG+ IY S++  Y IKPT EICACVVDMLGR+GQLD+AL+FIK MP++P 
Sbjct: 452 SACSKSGLVDEGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPG 511

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486
           PS+WG+L++ASV+HGNS  +DLAY+ L++LEPENPSNY+SLSN YAS RRWD V E+RT+
Sbjct: 512 PSVWGSLLTASVIHGNSRTRDLAYRHLLELEPENPSNYISLSNTYASDRRWDVVTEVRTI 571

Query: 487 MKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
           MK+RGLKK PGCSWI+I GKTH FSVADKAHP S  IYEML DL+ IM    A
Sbjct: 572 MKERGLKKVPGCSWITISGKTHSFSVADKAHPSSSLIYEMLGDLVSIMTDGCA 624



 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 173/464 (37%), Positives = 261/464 (56%), Gaps = 51/464 (10%)

Query: 9   TFALVTSRNYTSATVQ---------HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           +F L TSR YTSATV          H LQ+    RS KL +QSH+QIL+ G   N F++T
Sbjct: 8   SFTLTTSRYYTSATVSLAHTPQSLLHLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLAT 67

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           +L++AYA CG+   S+ VF S++ K VYL+NSLINGYVKNH   +AL LF  M  + + P
Sbjct: 68  RLVSAYATCGELATSRFVFESVEAKSVYLWNSLINGYVKNHDFRQALALFREMGRNGMLP 127

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           DD+TLAT+ K+ GE++DL  G LIHG  I+IGFV DV++ NSLMSMY +CG+F + + +F
Sbjct: 128 DDYTLATVFKVFGELEDLVSGKLIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVF 187

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN-GYVQNGDLD 238
           DE P RNVGS+NV ISG A                           A+ N  +  + DL 
Sbjct: 188 DETPHRNVGSFNVVISGCA---------------------------ALENCNFTSHDDLS 220

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG-LSGGKQIHGFAIRK----ELNHDVS 293
                FL MQ +   + +  ++ S+LP C    G    G+++H + ++     +++ DV 
Sbjct: 221 N---FFLRMQCEG-FKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDLKMDSDVH 276

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VC 352
           L ++LIDMYS+   +   RRVF D   N++   W+++++GY  +G   +A++L   M + 
Sbjct: 277 LGSSLIDMYSRSKKVVLGRRVF-DQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMK 335

Query: 353 LGSKPDIITIVGVLSACG-RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
            G +P+ ++++  L ACG  +GLI  G +I+   I    +     +C  ++DM  + G L
Sbjct: 336 DGIRPNKVSLISALPACGLLAGLIG-GKQIHGFSIKM-ELNDDVSLCNALIDMYSKCGSL 393

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           D A    +T         W +++SA  +HG  E   +AY  ++Q
Sbjct: 394 DYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQ 437


>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/535 (49%), Positives = 355/535 (66%), Gaps = 51/535 (9%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           +YT AT+    +VS   + L L K  H + L +G +S+  V   +++ Y  C +   +  
Sbjct: 126 DYTLATIS---KVSGEIQDLVLGKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMK 182

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEAL-----ELFSNMYYSNVSPDDFTLATISKL- 130
           VF+ +  ++V  +N +I+G       + +L       F  M     + D FT+A++  + 
Sbjct: 183 VFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPMC 242

Query: 131 ---SGEI---KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
               G+    ++L+  ++ +GL +K+    DV + +SL+ MY +  K             
Sbjct: 243 CDSDGKFDHGRELHCYLVKNGLDLKM--CSDVHMGSSLIDMYSRSNK------------- 287

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
                                +V SRRVFDQMK RN+Y WTAMINGYVQNG  + AL+LF
Sbjct: 288 ---------------------LVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILF 326

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
            EMQ KDRI PN+VSLVSVLP C  L+GL GGKQ+H F+I+ E N  +SL NALIDMY+K
Sbjct: 327 REMQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAK 386

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           CGSLD ARRVF++ S++KDAITWSSI+S YGLHGKG EA+  Y +M+  G KPD+IT+VG
Sbjct: 387 CGSLDYARRVFDNGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVVG 446

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
           VLSAC RSGL++EG+ IYNS+   Y +KP+ EIC CVVD+LGR+GQLD+ALDFI+ MP+ 
Sbjct: 447 VLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREMPII 506

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484
           P PS+WG+L++ASV+HGNS  +DLAY+ L++LEPENPSNY+SLSN YASSRRWD + E+R
Sbjct: 507 PGPSVWGSLLTASVIHGNSMTRDLAYRCLLELEPENPSNYISLSNTYASSRRWDEITEVR 566

Query: 485 TMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
           +MMK+RGL+K PG SWI+I  K H F+VADK HP S SIYEMLDDL+ IM    A
Sbjct: 567 SMMKERGLRKVPGISWITISDKNHFFTVADKVHPSSSSIYEMLDDLVSIMTDGCA 621



 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 260/470 (55%), Gaps = 54/470 (11%)

Query: 9   TFALVTSRN--YTSATVQ-------HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           TF+  TSR   +TSA V        H LQ+S    SLKLT+Q HSQIL+     N F++T
Sbjct: 6   TFSRTTSRYRYHTSAIVSLSPHNLLHLLQLSIDLHSLKLTQQCHSQILTNCFSQNAFLTT 65

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           +LI+AYA  G    S+LVF+S+  K+VYL+NSLINGYVKNH  + A+ LF  M    + P
Sbjct: 66  RLISAYATFGDSIMSKLVFDSVHTKNVYLWNSLINGYVKNHQFDNAIVLFRQMGRC-LLP 124

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           DD+TLATISK+SGEI+DL +G LIHG S++IGFV D+++ NS+MSMY++C +F + + +F
Sbjct: 125 DDYTLATISKVSGEIQDLVLGKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVF 184

Query: 180 DEMPQRNVGSWNVRISGHASSG--DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           DEMPQRNVGS+NV ISG A+ G  D+SL       F +M+            GY  N D 
Sbjct: 185 DEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRMQ----------CQGY--NAD- 231

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG-LSGGKQIHGFAIRKELN----HDV 292
                                ++ S+LP C    G    G+++H + ++  L+     DV
Sbjct: 232 -------------------AFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLDLKMCSDV 272

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            + ++LIDMYS+   L  +RRVF D   +++   W+++++GY  +G    A++L+ +M  
Sbjct: 273 HMGSSLIDMYSRSNKLVLSRRVF-DQMKSRNIYVWTAMINGYVQNGAPEGALILFREMQR 331

Query: 353 LGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
               +P+ +++V VL ACG    +  G +++   I          +   ++DM  + G L
Sbjct: 332 KDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKM-EFNDYISLRNALIDMYAKCGSL 390

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPE 459
           D A               W +++SA  +HG  +     Y  ++Q  ++P+
Sbjct: 391 DYARRVFDNGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPD 440



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 144/286 (50%), Gaps = 23/286 (8%)

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           IS +A+ GD    + S+ VFD +  +NVY W ++INGYV+N   D A+VLF   Q+   +
Sbjct: 68  ISAYATFGD---SIMSKLVFDSVHTKNVYLWNSLINGYVKNHQFDNAIVLF--RQMGRCL 122

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
            P+  +L ++      +  L  GK IHG ++R     D+ + N+++ MY +C     A +
Sbjct: 123 LPDDYTLATISKVSGEIQDLVLGKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMK 182

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL-----LYNKMVCLGSKPDIITIVGVLSA 368
           VF++    ++  +++ I+SG    G    ++       + +M C G   D  T+  +L  
Sbjct: 183 VFDEMP-QRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPM 241

Query: 369 CGRS-GLINEGLEIYNSVI-NTYRIKPTTEI--CACVVDMLGRAGQL---DRALDFIKTM 421
           C  S G  + G E++  ++ N   +K  +++   + ++DM  R+ +L    R  D +K+ 
Sbjct: 242 CCDSDGKFDHGRELHCYLVKNGLDLKMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSR 301

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
            +     +W A+++  V +G  E   + ++ + + +   P N VSL
Sbjct: 302 NIY----VWTAMINGYVQNGAPEGALILFREMQRKDRIRP-NRVSL 342


>gi|449519723|ref|XP_004166884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 636

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/456 (47%), Positives = 295/456 (64%), Gaps = 32/456 (7%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           + K  H + L LG IS+  V+  LI+ Y   G+  +S  +FN +  ++   +N L+ GY 
Sbjct: 149 VAKSIHGKSLRLGFISDIIVANSLISMYFKYGECKESLKLFNEMPERNSGSWNVLLAGYA 208

Query: 98  KNHGH---NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
                    EA E   NM    + PD FT++++ +  G       G L +G  +    V 
Sbjct: 209 SFSDCFYVKEAWEAVRNMQIDGIKPDAFTISSLLQFCGHPN----GKLSYGKELHCYIVK 264

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           + +  +S    ++ CG          EM  R   +                 + SR VFD
Sbjct: 265 NELDLDSGSKFHIGCG--------LIEMYSRENNT-----------------IASRYVFD 299

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           Q+K RN+Y WTAM++GY QN D D+AL+LF EMQ+KD I PNKVSLVS+LP CS   GL 
Sbjct: 300 QIKSRNIYVWTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLM 359

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GKQIHG+AIRKE ++DV+LCNALID YSKCGSL+ A++VFE  SF KD I+W++++S Y
Sbjct: 360 NGKQIHGYAIRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCKDTISWTTLISAY 419

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           GL+G   +++ LYN MV    KPD IT++ VLSACGRSGL+NEGL++YN+ +  ++I+PT
Sbjct: 420 GLYGLAEKSIRLYNDMVERSIKPDQITVLAVLSACGRSGLVNEGLQLYNTAVQEHKIEPT 479

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            EICA VV MLG +G+L++A  FI TM VEP P +WGALVSAS+ + N+EM +LAY+ L+
Sbjct: 480 AEICAAVVYMLGNSGELEQAFSFISTMMVEPGPGVWGALVSASIKYRNNEMLELAYRYLV 539

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
           +LEP+NPSN++SLSNLYAS+ RWDAVAELR  MK+R
Sbjct: 540 ELEPDNPSNFISLSNLYASASRWDAVAELRNTMKER 575



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 244/443 (55%), Gaps = 42/443 (9%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S ++ HFLQ +  HRS K   QSH+++++ G   N F+ TKLI+AY++CG   +  L+F+
Sbjct: 30  SPSLLHFLQHAINHRSQKRIHQSHARVITHGLGQNTFLITKLISAYSICGDLKELNLIFD 89

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
               K VY++NSLI+GYVK    + A   F+ M   N+ PDDFTL+ ++K S E+ ++ V
Sbjct: 90  LASIKTVYIWNSLISGYVKKGMFHGAFGRFNEMQKCNIVPDDFTLSILAKASNELGNVVV 149

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              IHG S+++GF+ D+I+ANSL+SMY K G+  E L LF+EMP+RN GSWNV ++G+AS
Sbjct: 150 AKSIHGKSLRLGFISDIIVANSLISMYFKYGECKESLKLFNEMPERNSGSWNVLLAGYAS 209

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
             D   V                AW A+ N                 MQ+ D I+P+  +
Sbjct: 210 FSDCFYVKE--------------AWEAVRN-----------------MQI-DGIKPDAFT 237

Query: 260 LVSVLPTCSSLIG-LSGGKQIHGFAIRKELNHD----VSLCNALIDMYSKCGSLDCARRV 314
           + S+L  C    G LS GK++H + ++ EL+ D      +   LI+MYS+  +   +R V
Sbjct: 238 ISSLLQFCGHPNGKLSYGKELHCYIVKNELDLDSGSKFHIGCGLIEMYSRENNTIASRYV 297

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACG-RS 372
           F D   +++   W+++VSGY  +    +A++L+++M +  G  P+ +++V +L AC   +
Sbjct: 298 F-DQIKSRNIYVWTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHA 356

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           GL+N G +I+   I        T +C  ++D   + G L+ A    ++         W  
Sbjct: 357 GLMN-GKQIHGYAIRKEYHNDVT-LCNALIDTYSKCGSLEYAKKVFESDSFCKDTISWTT 414

Query: 433 LVSASVMHGNSEMQDLAYKSLIQ 455
           L+SA  ++G +E     Y  +++
Sbjct: 415 LISAYGLYGLAEKSIRLYNDMVE 437



 Score = 38.5 bits (88), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 43/234 (18%), Positives = 95/234 (40%), Gaps = 7/234 (2%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-K 84
            L   + H  L   KQ H   +   + ++  +   LI  Y+ CG    ++ VF S    K
Sbjct: 348 LLPACSLHAGLMNGKQIHGYAIRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCK 407

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D   + +LI+ Y       +++ L+++M   ++ PD  T+  +    G    +N G+ ++
Sbjct: 408 DTISWTTLISAYGLYGLAEKSIRLYNDMVERSIKPDQITVLAVLSACGRSGLVNEGLQLY 467

Query: 145 GLSI---KIGFVVDVILANSLMSMYVKCGKFSECLNLFDE-MPQRNVGSWNVRISGHASS 200
             ++   KI    ++  A  ++ M    G+  +  +     M +   G W   +S     
Sbjct: 468 NTAVQEHKIEPTAEICAA--VVYMLGNSGELEQAFSFISTMMVEPGPGVWGALVSASIKY 525

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
            +  ++  + R   +++  N   + ++ N Y      D    L   M+ ++ ++
Sbjct: 526 RNNEMLELAYRYLVELEPDNPSNFISLSNLYASASRWDAVAELRNTMKERENVK 579


>gi|449462493|ref|XP_004148975.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 613

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/456 (47%), Positives = 295/456 (64%), Gaps = 32/456 (7%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           + K  H + L LG IS+  V+  L++ Y   G+  +S  +FN +  ++   +N L+ GY 
Sbjct: 149 VAKSIHGKSLRLGFISDIIVANSLMSMYFKYGECKESLKLFNEMPERNSGSWNVLLAGYA 208

Query: 98  KNHGH---NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
                    EA E   NM    + PD FT++++ +  G       G L +G  +    V 
Sbjct: 209 SFSDCFYVKEAWEAVRNMQLDGIKPDAFTISSLLQFCGHPN----GKLSYGKELHCYIVK 264

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           + +  +S    ++ CG          EM  R   +                 + SR VFD
Sbjct: 265 NELDLDSGSKFHIGCG--------LIEMYSRENNT-----------------IASRYVFD 299

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           Q+K RN+Y WTAM++GY QN D D+AL+LF EMQ+KD I PNKVSLVS+LP CS   GL 
Sbjct: 300 QIKSRNIYVWTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLM 359

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GKQIHG+AIRKE ++DV+LCNALID YSKCGSL+ A++VFE  SF KD I+W++++S Y
Sbjct: 360 NGKQIHGYAIRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCKDTISWTTLISAY 419

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           GL+G   +++ LYN MV    KPD IT++ VLSACGRSGL+NEGL++YN+ +  ++I+PT
Sbjct: 420 GLYGLAEKSIRLYNDMVERSIKPDQITVLAVLSACGRSGLVNEGLQLYNTAVQEHKIEPT 479

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            EICA VV MLG +G+L++A  FI TM VEP P +WGALVSAS+ + N+EM +LAY+ L+
Sbjct: 480 AEICAAVVYMLGNSGELEQAFSFISTMMVEPGPGVWGALVSASIKYRNNEMLELAYRYLV 539

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
           +LEP+NPSN++SLSNLYAS+ RWDAVAELR  MK+R
Sbjct: 540 ELEPDNPSNFISLSNLYASASRWDAVAELRNTMKER 575



 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 244/443 (55%), Gaps = 42/443 (9%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S ++ HFLQ +  HRS K   QSH+++++ G   N F+ TKLI+AY++CG   +  L+F+
Sbjct: 30  SPSLLHFLQHAINHRSQKRIHQSHARVITHGLGQNTFLITKLISAYSICGDLKELNLIFD 89

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
               K VY++NSLI+GYVK    + A   F+ M   N+ PDDFTL+ ++K S E+ ++ V
Sbjct: 90  LASIKTVYIWNSLISGYVKKGMFHGAFGRFNEMQKCNIVPDDFTLSILAKASNELGNVVV 149

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              IHG S+++GF+ D+I+ANSLMSMY K G+  E L LF+EMP+RN GSWNV ++G+AS
Sbjct: 150 AKSIHGKSLRLGFISDIIVANSLMSMYFKYGECKESLKLFNEMPERNSGSWNVLLAGYAS 209

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
             D   V                AW A+ N                 MQL D I+P+  +
Sbjct: 210 FSDCFYVKE--------------AWEAVRN-----------------MQL-DGIKPDAFT 237

Query: 260 LVSVLPTCSSLIG-LSGGKQIHGFAIRKELNHD----VSLCNALIDMYSKCGSLDCARRV 314
           + S+L  C    G LS GK++H + ++ EL+ D      +   LI+MYS+  +   +R V
Sbjct: 238 ISSLLQFCGHPNGKLSYGKELHCYIVKNELDLDSGSKFHIGCGLIEMYSRENNTIASRYV 297

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACG-RS 372
           F D   +++   W+++VSGY  +    +A++L+++M +  G  P+ +++V +L AC   +
Sbjct: 298 F-DQIKSRNIYVWTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHA 356

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           GL+N G +I+   I        T +C  ++D   + G L+ A    ++         W  
Sbjct: 357 GLMN-GKQIHGYAIRKEYHNDVT-LCNALIDTYSKCGSLEYAKKVFESDSFCKDTISWTT 414

Query: 433 LVSASVMHGNSEMQDLAYKSLIQ 455
           L+SA  ++G +E     Y  +++
Sbjct: 415 LISAYGLYGLAEKSIRLYNDMVE 437



 Score = 38.5 bits (88), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 43/234 (18%), Positives = 95/234 (40%), Gaps = 7/234 (2%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-K 84
            L   + H  L   KQ H   +   + ++  +   LI  Y+ CG    ++ VF S    K
Sbjct: 348 LLPACSLHAGLMNGKQIHGYAIRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCK 407

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D   + +LI+ Y       +++ L+++M   ++ PD  T+  +    G    +N G+ ++
Sbjct: 408 DTISWTTLISAYGLYGLAEKSIRLYNDMVERSIKPDQITVLAVLSACGRSGLVNEGLQLY 467

Query: 145 GLSI---KIGFVVDVILANSLMSMYVKCGKFSECLNLFDE-MPQRNVGSWNVRISGHASS 200
             ++   KI    ++  A  ++ M    G+  +  +     M +   G W   +S     
Sbjct: 468 NTAVQEHKIEPTAEICAA--VVYMLGNSGELEQAFSFISTMMVEPGPGVWGALVSASIKY 525

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
            +  ++  + R   +++  N   + ++ N Y      D    L   M+ ++ ++
Sbjct: 526 RNNEMLELAYRYLVELEPDNPSNFISLSNLYASASRWDAVAELRNTMKERENVK 579


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/534 (39%), Positives = 321/534 (60%), Gaps = 19/534 (3%)

Query: 23  VQHF---------LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73
           +QHF          Q    H  +KL +Q+H+QI+  G   N F++ K++  YA  G    
Sbjct: 71  LQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDS 130

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA----LELFSNMYYSNVSPDDFTLATISK 129
           + +VF+ I +    LYNS+I  Y + HG        LE ++ M++  +  D+FTL  + K
Sbjct: 131 AVVVFDRIDNPSSLLYNSIIRAYTR-HGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLK 189

Query: 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189
              ++  + +G  +HG  +++G   D  +  SL+ MYVKCG   +   LFD+M  R++ S
Sbjct: 190 SCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMAS 249

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM-Q 248
           WN  I+G+   G+  +   +  +F++M+ RN+ +WTAMI+GY QNG  ++AL LF EM Q
Sbjct: 250 WNALIAGYMKEGEIGV---AEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQ 306

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
               ++PN V++VSVLP C+    L  G++IH FA    L+ + S+  AL  MY+KC SL
Sbjct: 307 DGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSL 366

Query: 309 DCARRVFEDSSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
             AR  F+  + N K+ I W+++++ Y  HG G EAV ++  M+  G +PD +T +G+LS
Sbjct: 367 VEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLS 426

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
            C  SGLI+ GL  +N +   + ++P  E  ACVVD+LGRAG+L  A + I  MP++  P
Sbjct: 427 GCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGP 486

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
           S+WGAL++A   H N E+ +LA + L  LEP+N  NYV LSNLYA +  W+ V +LR ++
Sbjct: 487 SVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALL 546

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           K +G+KKSPGCSWI I+GK+H F  ADK+HP +  IY+ L+ L   ++ A   P
Sbjct: 547 KYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIP 600


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/551 (37%), Positives = 316/551 (57%), Gaps = 39/551 (7%)

Query: 28   QVSATHRSLKLTKQSHSQILSLGHI--SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            Q+   +  +K  K+ HS+I  + H   SNP +  KL+ AYA+CG+P  ++ +F+ I  K+
Sbjct: 1032 QILDKNPDIKYLKKLHSKIC-IDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKN 1090

Query: 86   VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
            V  +N +I  YV NH +++AL +F NM    + PD +T   + K S   +DL VGM IH 
Sbjct: 1091 VVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHA 1150

Query: 146  LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
              +++G  ++V + N L+SMY KCG   E   + DZMP R+V SWN  ++G A +G F  
Sbjct: 1151 AVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDD 1210

Query: 206  VVRS----------------------------------RRVFDQMKRRNVYAWTAMINGY 231
             +                                    + +F ++  +++ +W  MI  Y
Sbjct: 1211 ALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVY 1270

Query: 232  VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            + N    EA+ +FL+M+    ++P+ +S+ SVLP C  L  L  G++IH + +RK L  +
Sbjct: 1271 MNNSMPAEAVDIFLQME-DHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPN 1329

Query: 292  VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
            + L NALIDMY+KCG L+ AR VF+   F +D ++W+S++S YG++GKG +AV L+++M 
Sbjct: 1330 LLLENALIDMYAKCGCLEYAREVFDQMKF-RDVVSWTSMISAYGMNGKGRDAVSLFSRMQ 1388

Query: 352  CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             LG  PD I  V VLSAC  +GL++EG   +  +    +I P  E   C+VD+LGRAGQ+
Sbjct: 1389 DLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQV 1448

Query: 412  DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
            D A  FIK MP+EP+  +WGAL+SA  ++ N  +  LA   L QL PE    YV LSN+Y
Sbjct: 1449 DEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIY 1508

Query: 472  ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
            A + RW+ V  +R++MK +G+KK PG S   +  + H F   D++HP S  IYE LD L+
Sbjct: 1509 AKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLV 1568

Query: 532  LIMRGAAASPH 542
              M+ A   P 
Sbjct: 1569 GKMKEAGYVPE 1579



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 150/349 (42%), Gaps = 50/349 (14%)

Query: 27   LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
            L+ S+    L +  Q H+ ++ +G   N FV   LI+ Y  CG   ++  V + +  +DV
Sbjct: 1133 LKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDV 1192

Query: 87   YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI------------------- 127
              +NSL+ G  +N   ++ALE+   M    + PD  T+A++                   
Sbjct: 1193 VSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMF 1252

Query: 128  SKLSGE-IKDLNVGMLIHGLSIKIGFVVDVIL----------ANSLMSMYVKCGKFSECL 176
             KL+ + +   NV + ++  +      VD+ L          A S+ S+   CG  S  L
Sbjct: 1253 MKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALL 1312

Query: 177  -------NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
                    +  +  Q N+   N  I  +A  G    +  +R VFDQMK R+V +WT+MI+
Sbjct: 1313 LGRRIHEYVVRKRLQPNLLLENALIDMYAKCG---CLEYAREVFDQMKFRDVVSWTSMIS 1369

Query: 230  GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF-----AI 284
             Y  NG   +A+ LF  MQ    + P+ ++ VSVL  CS    L  G+           I
Sbjct: 1370 AYGMNGKGRDAVSLFSRMQ-DLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKI 1428

Query: 285  RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
               + H V     ++D+  + G +D A    +      +   W +++S 
Sbjct: 1429 VPRIEHFV----CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSA 1473


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/551 (37%), Positives = 315/551 (57%), Gaps = 39/551 (7%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHI--SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           Q+   +  +K  K+ HS+I  + H   SNP +  KL+ AYA+CG+P  ++ +F+ I  K+
Sbjct: 43  QILDKNPDIKYLKKLHSKI-CIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKN 101

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           V  +N +I  YV NH +++AL +F NM    + PD +T   + K S   +DL VGM IH 
Sbjct: 102 VVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHA 161

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             +++G  ++V + N L+SMY KCG   E   + D+MP R+V SWN  ++G A +G F  
Sbjct: 162 AVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDD 221

Query: 206 VVRS----------------------------------RRVFDQMKRRNVYAWTAMINGY 231
            +                                    + +F ++  +++ +W  MI  Y
Sbjct: 222 ALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVY 281

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
           + N    EA+ +FL+M+    ++P+ +S+ SVLP C  L  L  G++IH + +RK L  +
Sbjct: 282 MNNSMPAEAVDIFLQME-DHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPN 340

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           + L NALIDMY+KCG L+ AR VF+   F +D ++W+S++S YG++GKG +AV L+++M 
Sbjct: 341 LLLENALIDMYAKCGCLEYAREVFDQMKF-RDVVSWTSMISAYGMNGKGRDAVSLFSRMQ 399

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
            LG  PD I  V VLSAC  +GL++EG   +  +    +I P  E   C+VD+LGRAGQ+
Sbjct: 400 DLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQV 459

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
           D A  FIK MP+EP+  +WGAL+SA  ++ N  +  LA   L QL PE    YV LSN+Y
Sbjct: 460 DEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIY 519

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           A + RW+ V  +R++MK +G+KK PG S   +  + H F   D++HP S  IYE LD  +
Sbjct: 520 AKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSV 579

Query: 532 LIMRGAAASPH 542
             M+ A   P 
Sbjct: 580 GKMKEAGYVPE 590



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 154/363 (42%), Gaps = 53/363 (14%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           +   +YT   V   L+ S+    L +  Q H+ ++ +G   N FV   LI+ Y  CG   
Sbjct: 133 IDPDHYTYPCV---LKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLV 189

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI----- 127
           ++  V + +  +DV  +NSL+ G  +N   ++ALE+   M    + PD  T+A++     
Sbjct: 190 EACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVT 249

Query: 128 --------------SKLSGE-IKDLNVGMLIHGLSIKIGFVVDVIL----------ANSL 162
                          KL+ + +   NV + ++  +      VD+ L          A S+
Sbjct: 250 NTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISI 309

Query: 163 MSMYVKCGKFSECL-------NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
            S+   CG  S  L        +  +  Q N+   N  I  +A  G       +R VFDQ
Sbjct: 310 ASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEY---AREVFDQ 366

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           MK R+V +WT+MI+ Y  NG   +A+ LF  MQ    + P+ ++ VSVL  CS    L  
Sbjct: 367 MKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQ-DLGLNPDSIAFVSVLSACSHAGLLDE 425

Query: 276 GKQIHGF-----AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
           G+           I   + H V     ++D+  + G +D A    +      +   W ++
Sbjct: 426 GRYYFKLMTEECKIVPRIEHFV----CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGAL 481

Query: 331 VSG 333
           +S 
Sbjct: 482 LSA 484


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/508 (40%), Positives = 295/508 (58%), Gaps = 5/508 (0%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LKL  Q H+ +L  G      V +K++  YA  G    S  VFN I      L+NS+I  
Sbjct: 86  LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRA 145

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y +       +  + +M+    + D FT   + K S E+  + +G  +HGL ++IG   D
Sbjct: 146 YARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD 205

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + +A SL+ +Y KCG+ ++   +FD M  R+V SWN  ++G+  SG    +  +  +F++
Sbjct: 206 LYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSG---CIDAALAIFER 262

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLS 274
           M  RN+ +WT MI+GY Q+G   +AL LF EM  +D  + PN V+++SVLP C+ L  L 
Sbjct: 263 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 322

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN-KDAITWSSIVSG 333
            G+QIH  A R  LN + S+  AL  MY+KCGSL  AR  F+  + N K+ I W+++++ 
Sbjct: 323 RGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 382

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y  +G G +AV  + +M+  G +PD IT  G+LS C  SGL++ GL+ +N +  TY I P
Sbjct: 383 YASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINP 442

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             E  ACV D+LGRAG+L  A   +  MP+   PSIWG+L++A   H N EM + A + L
Sbjct: 443 RVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKL 502

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
             LEPEN  NYV LSN+YA + RW  V +LR ++K +G KKSPGCSWI I+GK H F   
Sbjct: 503 FVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGG 562

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASP 541
           D +HP    IY  L+ L   M+ A   P
Sbjct: 563 DTSHPQGKEIYMFLEALPEKMKAAGYFP 590



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 127/301 (42%), Gaps = 46/301 (15%)

Query: 1   MILSSARNTFALVTSRNYTSA----------TVQHFLQVSATHRSLKLTKQSHSQILSLG 50
           MI + AR  FA  T   Y S           T    L+ S    S+ + K  H  IL +G
Sbjct: 142 MIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIG 201

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
              + +V+T LI  Y  CG+   +  VF+++  +DV  +N+L+ GY K+   + AL +F 
Sbjct: 202 LQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFE 261

Query: 111 NMYYSN---------------------------------VSPDDFTLATISKLSGEIKDL 137
            M + N                                 V P+  T+ ++     ++  L
Sbjct: 262 RMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTL 321

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM--PQRNVGSWNVRIS 195
             G  IH L+ ++G   +  +  +L +MY KCG   +  N FD++   ++N+ +WN  I+
Sbjct: 322 ERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMIT 381

Query: 196 GHASSG-DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
            +AS G     V   R +     + +   +T +++G   +G +D  L  F  M     I 
Sbjct: 382 AYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSIN 441

Query: 255 P 255
           P
Sbjct: 442 P 442



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A   +L+  +Q H     +G  SN  V   L   YA CG    ++  F+ +
Sbjct: 307 TIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKL 366

Query: 82  --QHKDVYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
               K++  +N++I  Y  ++GH  +A+  F  M  + + PDD T   +         ++
Sbjct: 367 NRNEKNLIAWNTMITAYA-SYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVD 425

Query: 139 VGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISG 196
           VG+   + +S        V     +  +  + G+ +E   L  EMP     S W   ++ 
Sbjct: 426 VGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAA 485

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
                +  +   + R    ++  N   +  + N Y + G   E
Sbjct: 486 CRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQE 528


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/542 (35%), Positives = 311/542 (57%), Gaps = 36/542 (6%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
            +K  K+ H+ I  L    NP +  KL+ +YA CG+P  ++ VF+ +  ++V  YN +I 
Sbjct: 33  DIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIR 92

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            YV NH +++ L +F  M      PD++T   + K     ++L  G+LIHG  +K+G   
Sbjct: 93  SYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDF 152

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF----------- 203
           ++ + N L++MY KCG   E   +FDEM  ++V SWN  ++G+A +  F           
Sbjct: 153 NLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREME 212

Query: 204 ------------SL-----------VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                       SL           V+   ++F  ++R+N+ +W  MI  Y++N    +A
Sbjct: 213 DYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQA 272

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           + L+L+M+ K R+EP+ ++  SVLP C  L  L  G++IH +  +K+L  ++ L N+LID
Sbjct: 273 VDLYLQME-KCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLID 331

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY++CG LD A+RVF+   F +D  +W+S++S YG+ G+G  AV L+ +M+  G  PD I
Sbjct: 332 MYARCGCLDDAKRVFDRMKF-RDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSI 390

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
             V +LSAC  SGL++EG   +  + + YRI P  E  AC+VD+LGRAG++D A + IK 
Sbjct: 391 AFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQ 450

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP+EP+  +W  L+S+  +  N ++  LA  +L+QL PE    YV LSN+YA + RW  V
Sbjct: 451 MPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEV 510

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540
            E+R++MK + ++K+PG S + ++ + H F   D +HP S  IYE L  L+  M+     
Sbjct: 511 TEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYV 570

Query: 541 PH 542
           P 
Sbjct: 571 PE 572



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 152/361 (42%), Gaps = 59/361 (16%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           NYT   V   L+  +   +L+     H  +L +G   N FV   LI  Y  CG   +++ 
Sbjct: 119 NYTYPCV---LKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARR 175

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ +  KDV  +NS++ GY  N   ++ALE+   M      PD  T+A++         
Sbjct: 176 VFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSS 235

Query: 137 LNVGMLIHGLSIKIGFV----VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            NV      L ++  FV     ++I  N ++ +Y+K    ++ ++L+ +M +  V    +
Sbjct: 236 ENV------LYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAI 289

Query: 193 RISG-HASSGDFSLVVRSR-----------------------------------RVFDQM 216
             +    + GD S ++  R                                   RVFD+M
Sbjct: 290 TFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRM 349

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           K R+V +WT++I+ Y   G    A+ LF EM L     P+ ++ V++L  CS    L  G
Sbjct: 350 KFRDVASWTSLISAYGMTGQGCNAVALFTEM-LNSGQAPDSIAFVAILSACSHSGLLDEG 408

Query: 277 K-----QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
           +         + I   + H       L+D+  + G +D A  + +      +   W++++
Sbjct: 409 RIYFKQMTDDYRITPRIEHYA----CLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLL 464

Query: 332 S 332
           S
Sbjct: 465 S 465


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/522 (36%), Positives = 298/522 (57%), Gaps = 36/522 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+T+   + V A   +L+  KQ H   +  G  S+  V   L+  YA CG    +  +F 
Sbjct: 221 SSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFE 280

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  +DV  +N++I GY  N  H+EAL  F+ M    + P+  T+ ++      +  L  
Sbjct: 281 RMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQ 340

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IHG +I+ GF  + ++ N+L++MY KCG  +    LF+ MP                
Sbjct: 341 GQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP---------------- 384

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                             ++NV AW A+I+GY Q+G   EAL LF+EMQ +  I+P+  +
Sbjct: 385 ------------------KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQG-IKPDSFA 425

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +VSVLP C+  + L  GKQIHG+ IR     +V +   L+D+Y+KCG+++ A+++FE   
Sbjct: 426 IVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP 485

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D ++W++++  YG+HG G +A+ L++KM   G+K D I    +L+AC  +GL+++GL
Sbjct: 486 -EQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGL 544

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           + +  + + Y + P  E  AC+VD+LGRAG LD A   IK M +EP  ++WGAL+ A  +
Sbjct: 545 QYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRI 604

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H N E+ + A K L +L+P+N   YV LSN+YA ++RW+ VA+LR MMK++G+KK PGCS
Sbjct: 605 HCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCS 664

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            +++H     F V D+ HP S  IY ML+ L   MR A   P
Sbjct: 665 VVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVP 706



 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/421 (32%), Positives = 218/421 (51%), Gaps = 45/421 (10%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N   +T+ ++A A   Q TQ+ +  N++      ++   I GYVKN   N+AL L+  M 
Sbjct: 59  NKVKTTREVSACANQTQFTQTDIRNNAV------VWKETIIGYVKNGFWNKALRLYYQMQ 112

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
            + ++PD     ++ K  G   DL  G  +H   I  GF  DVI+  +L SMY KCG   
Sbjct: 113 RTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLE 172

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
                                              +R+VFD+M +R+V +W A+I GY Q
Sbjct: 173 N----------------------------------ARQVFDRMPKRDVVSWNAIIAGYSQ 198

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           NG   EAL LF EMQ+ + I+PN  +LVSV+P C+ L+ L  GKQIH +AIR  +  DV 
Sbjct: 199 NGQPYEALALFSEMQV-NGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVL 257

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           + N L++MY+KCG+++ A ++FE     +D  +W++I+ GY L+ + HEA+  +N+M   
Sbjct: 258 VVNGLVNMYAKCGNVNTAHKLFERMPI-RDVASWNAIIGGYSLNSQHHEALAFFNRMQVR 316

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G KP+ IT+V VL AC     + +G +I+   I +   +    +   +V+M  + G ++ 
Sbjct: 317 GIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRS-GFESNDVVGNALVNMYAKCGNVNS 375

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A    + MP + +   W A++S    HG+   + LA    +Q +   P ++  +S L A 
Sbjct: 376 AYKLFERMP-KKNVVAWNAIISGYSQHGHPH-EALALFIEMQAQGIKPDSFAIVSVLPAC 433

Query: 474 S 474
           +
Sbjct: 434 A 434


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/521 (37%), Positives = 302/521 (57%), Gaps = 5/521 (0%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQS-HSQILSLGHISNPFVSTKLITAYALCGQ 70
           L  S+ + ++    F+  +AT  S  L  Q+ H  ++     S+ F+S  LI  Y+  G 
Sbjct: 122 LHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGD 181

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
              + LVF+ I  KD+  +NS+I+G+V+     EAL+LF  M   N  P+  T+  +   
Sbjct: 182 LDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSA 241

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
             +  DL  G        + G  +++IL+N+++ MYVKCG   +   LFD+M ++++ SW
Sbjct: 242 CAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSW 301

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
              I G+A  GD+     +RRVFD M R ++ AW A+I+ Y QNG   EAL +F E+QL 
Sbjct: 302 TTMIDGYAKVGDYD---AARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLN 358

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
              +PN+V+L S L  C+ L  +  G  IH +  ++ +  +  +  +LIDMYSKCG L+ 
Sbjct: 359 KNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEK 418

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           A  VF  S   +D   WS++++G  +HG G  A+ L++KM     KP+ +T   +L AC 
Sbjct: 419 ALEVFY-SVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACS 477

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
            SGL++EG   +N +   Y + P ++  AC+VD+LGRAG L+ A++ I+ MP+ PS S+W
Sbjct: 478 HSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVW 537

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
           GAL+ A  ++GN E+ ++A   L++ +  N   YV LSN+YA + +WD V+ LR  MK  
Sbjct: 538 GALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVS 597

Query: 491 GLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           GL+K PGCS I ++G  H F V D +HP S  IY  LD+++
Sbjct: 598 GLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIV 638



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 217/470 (46%), Gaps = 77/470 (16%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL--VFNSIQHKDVYLYNSLIN 94
           K  KQ H+ +L  G   +P  +TKL TA AL    +      VF+ I   ++Y +N+LI 
Sbjct: 44  KHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIR 103

Query: 95  GYVKNHGHNEALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            +  +    + L +F  M + S   P+ +T   + K + E+  L  G  IHG+ +K  F 
Sbjct: 104 AFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFG 163

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            D+ ++NSL+  Y   G       +F ++ ++++ SWN  IS                  
Sbjct: 164 SDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMIS------------------ 205

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                           G+VQ G  +EAL LF  M++++   PN+V++V VL  C+  I L
Sbjct: 206 ----------------GFVQGGSPEEALQLFKRMKMEN-ARPNRVTMVGVLSACAKRIDL 248

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             G+    +  R  ++ ++ L NA++DMY KCGSL+ ARR+F D    KD ++W++++ G
Sbjct: 249 EFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLF-DKMEEKDIVSWTTMIDG 307

Query: 334 YG-------------------------------LHGKGHEAVLLYNKM-VCLGSKPDIIT 361
           Y                                 +GK  EA+ ++ ++ +   +KP+ +T
Sbjct: 308 YAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVT 367

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
           +   L+AC + G ++ G  I+   I    IK    I   ++DM  + G L++AL+   ++
Sbjct: 368 LASTLAACAQLGAMDLGGWIH-VYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSV 426

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQ-DLAYKSLIQLEPENPSNYVSLSNL 470
                  +W A+++   MHG+     DL  K     E +   N V+ +NL
Sbjct: 427 E-RRDVFVWSAMIAGLAMHGHGRAAIDLFSK---MQETKVKPNAVTFTNL 472


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/501 (36%), Positives = 299/501 (59%), Gaps = 10/501 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K+ H+ I+      + F+ TK++       +   + L+F  +   + +LYN++I  Y  N
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHN 90

Query: 100 HGHNEALELFSNMY-----YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
             +  A+ ++  M       + + PD FT   + K    +   ++G  +HG   K G   
Sbjct: 91  KVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           + ++ NSL+ MYVKC    +   +F+EM +R+  SWN  ISGH   G      R+R +F+
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMR---RARAIFE 207

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M+ + +++WTA+++GY + G   +AL  F  MQ+   IEP+++SLVSVLP C+ L  L 
Sbjct: 208 EMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVG-IEPDEISLVSVLPACAQLGALE 266

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK IH +A +     ++ +CNALI+MY+KCGS+D  RR+F D    +D I+WS+++ G 
Sbjct: 267 LGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLF-DQMNERDVISWSTMIVGL 325

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG+ HEA+ L+ +M     +P+IIT VG+LSAC  +GL+NEGL  + S+   Y I+P 
Sbjct: 326 ANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPG 385

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+V++LG +G+LD+AL+ IK MP++P  +IWG+L+S+   H N E+  +A + L+
Sbjct: 386 VEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLL 445

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEP +  NYV LSNLYA   +WD V+ +R +M+ + +KK+PGCS I +      F+  D
Sbjct: 446 ELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGD 505

Query: 515 KAHPCSVSIYEMLDDLILIMR 535
            + P S +IY +L  L++  R
Sbjct: 506 DSKPFSKAIYRVLKLLVMHQR 526



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 140/341 (41%), Gaps = 69/341 (20%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI---- 93
           L KQ H  +   G  SN  V   L+  Y  C     +  VF  +  +D   +N+LI    
Sbjct: 135 LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHV 194

Query: 94  ---------------------------NGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
                                      +GY +   + +ALE F  M    + PD+ +L +
Sbjct: 195 RLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVS 254

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +     ++  L +G  IH  + K GF+ ++ + N+L+ MY KCG   E   LFD+M +R+
Sbjct: 255 VLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERD 314

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           V SW                                  + MI G   +G   EA+ LF E
Sbjct: 315 VISW----------------------------------STMIVGLANHGRAHEAIELFQE 340

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD--VSLCNALIDMYSK 304
           MQ K +IEPN ++ V +L  C+    L+ G + +  +++++ N +  V     L+++   
Sbjct: 341 MQ-KAKIEPNIITFVGLLSACAHAGLLNEGLR-YFESMKRDYNIEPGVEHYGCLVNLLGL 398

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
            G LD A  + +      D+  W S++S    H     AV+
Sbjct: 399 SGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVI 439



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 6/208 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+L K  H      G + N  V   LI  YA CG   + + +F+ +  +DV  ++++I 
Sbjct: 264 ALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIV 323

Query: 95  GYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           G + NHG  +EA+ELF  M  + + P+  T   +         LN G L +  S+K  + 
Sbjct: 324 G-LANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEG-LRYFESMKRDYN 381

Query: 154 VD--VILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVRSR 210
           ++  V     L+++    G+  + L L  +MP + +   W   +S   S  +  + V + 
Sbjct: 382 IEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAM 441

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLD 238
               +++  +   +  + N Y   G  D
Sbjct: 442 EHLLELEPADTGNYVLLSNLYADLGKWD 469


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 185/507 (36%), Positives = 303/507 (59%), Gaps = 5/507 (0%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           ++K  ++ H  I+ LG  SN FV   LI  Y+L G+ + ++ VF+     DV  +N +I+
Sbjct: 134 AVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMIS 193

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY ++   +E+++LF  M    V P   TL ++     ++KDLNVG  +H     +    
Sbjct: 194 GYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEP 253

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
             +L N+L+ MY  CG     L +FD M  R+V SW   ++G  + G   L   +R  FD
Sbjct: 254 VRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGL---ARNYFD 310

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  R+  +WTAMI+GY+Q     E L LF EMQ  + I+P++ ++VS+L  C+ L  L 
Sbjct: 311 KMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAAN-IKPDEFTMVSILTACAHLGALE 369

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+ I  +  + E+  D  + NALIDMY  CG+++ A R+F ++  ++D I+W++++ G 
Sbjct: 370 LGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIF-NAMPHRDKISWTAVIFGL 428

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            ++G G EA+ ++++M+     PD +T +GVL AC  SG++++G + +  +   + I+P 
Sbjct: 429 AINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPN 488

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
                C+VD+LGRAG L  A + IK MPV+P+  +WG+L+ A  +H + EM ++A + ++
Sbjct: 489 VAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQIL 548

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEPEN + YV L N+YA+  RW+ + E+R +M DRG+KK+PGCS I ++G  H F   D
Sbjct: 549 ELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGD 608

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASP 541
           + HP S  IY  LD++ + ++ A  SP
Sbjct: 609 QVHPQSKEIYSKLDEMSVDLKFAGYSP 635



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 206/453 (45%), Gaps = 75/453 (16%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC-----GQPTQSQLVFNSI 81
           L +  T +S+   KQ HSQ +  G ISNP V  ++I   A C     G    +++VF+++
Sbjct: 23  LSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQII---AFCCKHELGDMEYARMVFDTM 79

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
              + +++N++I GY +    N A+ ++  M    V PD++T   + K       +  G 
Sbjct: 80  PGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGR 139

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   +K+GF  +V + N+L+ +Y   G+ S    +FD   + +V +WNV ISG+  S 
Sbjct: 140 ELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSK 199

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
            F     S ++FD+M+R                                 R+ P+ ++LV
Sbjct: 200 QFD---ESMKLFDEMERM--------------------------------RVLPSSITLV 224

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE----- 316
           SVL  CS L  L+ GK++H +    ++     L NALIDMY+ CG +D A  +F+     
Sbjct: 225 SVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSR 284

Query: 317 -------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
                                    D    +D ++W++++ GY    +  E + L+ +M 
Sbjct: 285 DVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQ 344

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
               KPD  T+V +L+AC   G +  G E   + I+   IK  + +   ++DM    G +
Sbjct: 345 AANIKPDEFTMVSILTACAHLGALELG-EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNV 403

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           ++A+     MP     S W A++    ++G  E
Sbjct: 404 EKAIRIFNAMPHRDKIS-WTAVIFGLAINGYGE 435


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 189/522 (36%), Positives = 299/522 (57%), Gaps = 4/522 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    ++ +A   SL L +  H   +     S+ FV+  LI  Y  CG    +  VF +I
Sbjct: 135 TFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 194

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KDV  +NS+ING+V+    ++ALELF  M   +V     T+  +     +I+DL  G 
Sbjct: 195 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGR 254

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +     +    V++ LAN+++ MY KCG   +   LFD M +++  +W   + G+A S 
Sbjct: 255 RVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 314

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D+     +R V + M ++++ AW A+I+ Y QNG  +EAL++F E+QL+  I+ N+++LV
Sbjct: 315 DYEA---AREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLV 371

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S L  C+ +  L  G+ IH +  +  +  +  + +ALI MYSKCG L+ AR VF +S   
Sbjct: 372 STLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVF-NSVEK 430

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D   WS+++ G  +HG G EAV ++ KM     KP+ +T   V  AC  +GL++E   +
Sbjct: 431 RDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 490

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  + ++Y I P  +  AC+VD+LGR+G L++A+ FI+ MP+ PS S+WGAL+ A  +H 
Sbjct: 491 FYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 550

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N  + ++A   L++LEP N   +V LSN+YA S +WD V+ELR  M+  GLKK PGCS I
Sbjct: 551 NLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSI 610

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            I G  H F   D AHP S  +Y  L +++  ++     P +
Sbjct: 611 EIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEM 652



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 236/490 (48%), Gaps = 78/490 (15%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT--QSQLVFNSIQHKDVYLYNSL 92
           SL+  KQ+H+ ++  G  S+P+ ++KL    AL    +   ++ VF+ I   + + +N+L
Sbjct: 43  SLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTL 102

Query: 93  INGYVKNHGHNEALELFSNMYYSNVS--PDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           I  Y        ++  F +M  S     P+ +T   + K + E+  L++G  +HG++IK 
Sbjct: 103 IRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKS 162

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
               DV +ANSL+  Y  CG       +F  + +++V SWN                   
Sbjct: 163 AVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWN------------------- 203

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
                          +MING+VQ G  D+AL LF +M+ +D ++ + V++V VL  C+ +
Sbjct: 204 ---------------SMINGFVQKGSPDKALELFKKMESED-VKASHVTMVGVLSACAKI 247

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G+++  +     +N +++L NA++DMY+KCGS++ A+R+F D+   KD +TW+++
Sbjct: 248 RDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLF-DAMEEKDNVTWTTM 306

Query: 331 VSGYGL-------------------------------HGKGHEAVLLYNKMVCLGS-KPD 358
           + GY +                               +GK +EA+L+++++    + K +
Sbjct: 307 LDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLN 366

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            IT+V  LSAC + G +  G  I+ S I    IK    + + ++ M  + G L++A +  
Sbjct: 367 QITLVSTLSACAQVGALELGRWIH-SYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVF 425

Query: 419 KTMPVEPSPSIWGALVSASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
            ++  +    +W A++    MHG  SE  D+ YK     E     N V+ +N++ +    
Sbjct: 426 NSVE-KRDVFVWSAMIGGLAMHGCGSEAVDMFYK---MQEANVKPNGVTFTNVFCACSHT 481

Query: 478 DAVAELRTMM 487
             V E  ++ 
Sbjct: 482 GLVDEAESLF 491



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 127/322 (39%), Gaps = 72/322 (22%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS------- 53
           L SA   F  +  ++  S  + +  F+Q  +  ++L+L K+  S+ +   H++       
Sbjct: 184 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 243

Query: 54  ------------------------NPFVSTKLITAYALCGQPTQSQLVF----------- 78
                                   N  ++  ++  Y  CG    ++ +F           
Sbjct: 244 CAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 303

Query: 79  --------------------NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NV 117
                               N++  KD+  +N+LI+ Y +N   NEAL +F  +    N+
Sbjct: 304 TTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNI 363

Query: 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
             +  TL +      ++  L +G  IH    K G  ++  + ++L+ MY KCG   +   
Sbjct: 364 KLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKARE 423

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV----YAWTAMINGYVQ 233
           +F+ + +R+V  W+  I G A  G  S  V    +F +M+  NV      +T +      
Sbjct: 424 VFNSVEKRDVFVWSAMIGGLAMHGCGSEAV---DMFYKMQEANVKPNGVTFTNVFCACSH 480

Query: 234 NGDLDEALVLFLEMQLKDRIEP 255
            G +DEA  LF +M+    I P
Sbjct: 481 TGLVDEAESLFYKMESSYGIVP 502


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 310/560 (55%), Gaps = 36/560 (6%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ 75
           +N    T     QV  T+  LK  +  HS+I+S     N  +  KL+ AYA       ++
Sbjct: 36  KNSPKETAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATAR 95

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
            VF+ I  ++V + N +I  YV N  + E +++F  M   +V PD +T   + K      
Sbjct: 96  KVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSG 155

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           ++ +G  IHG + K+G    + + N L+SMY KCG  SE   + DEM +R+V SWN  ++
Sbjct: 156 NIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVA 215

Query: 196 GHASSGDF-----------------------SL-----------VVRSRRVFDQMKRRNV 221
           G+A +  F                       SL           V+  + +F +M ++++
Sbjct: 216 GYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSL 275

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            +W  MI  Y++N    EA+ L+  M+  D  EP+ VS+ SVLP C     LS GK+IHG
Sbjct: 276 VSWNVMIGVYMKNAMPVEAVELYSGME-ADGFEPDAVSITSVLPACGDTSALSLGKKIHG 334

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           +  RK+L  ++ L NALIDMY+KCG LD AR VFE+   ++D ++W++++S YG  G+G 
Sbjct: 335 YIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMK-SRDVVSWTAMISAYGFSGRGC 393

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           +AV L++KM   G  PD I  V  L+AC  +GL+ EG   +  + + Y+I P  E  AC+
Sbjct: 394 DAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACM 453

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           VD+LGRAG++  A  FI+ MP+EP+  +WGAL+ A  +H N+++  LA   L QL PE  
Sbjct: 454 VDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQS 513

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
             YV LSN+YA + RW+ V  +R +MK +GLKK+PG S + ++   H F V D++HP S 
Sbjct: 514 GYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSA 573

Query: 522 SIYEMLDDLILIMRGAAASP 541
            IY  LD L+  M+     P
Sbjct: 574 EIYRELDVLVKKMKELGYVP 593


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 184/499 (36%), Positives = 305/499 (61%), Gaps = 5/499 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H     LG  S+PFV T L+  YA CG+  +++L+F+ + H+DV  ++ +I+GY ++   
Sbjct: 145 HGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLF 204

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           N+AL LF  M   NV PD+  L+T+    G   +L+ G +IH   ++   VVD  L ++L
Sbjct: 205 NDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSAL 264

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           ++MY  CG     LNLF++M  +N+ +    ++G++  G    +  +R VF+QM ++++ 
Sbjct: 265 VTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQ---IENARSVFNQMVKKDLV 321

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W+AMI+GY ++    EAL LF EMQ    I+P++V+++SV+  C+ L  L   K IH F
Sbjct: 322 CWSAMISGYAESDSPQEALNLFNEMQ-SLGIKPDQVTMLSVITACAHLGALDQAKWIHLF 380

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
             +      + + NALI+MY+KCGSL+ ARR+F D    K+ I+W+ ++S + +HG    
Sbjct: 381 VDKNGFGGALPINNALIEMYAKCGSLERARRIF-DKMPRKNVISWTCMISAFAMHGDAGS 439

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+  +++M     +P+ IT VGVL AC  +GL+ EG +I+ S+IN + I P      C+V
Sbjct: 440 ALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMV 499

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+ GRA  L  AL+ ++ MP+ P+  IWG+L++A  +HG  E+ + A K L++L+P++  
Sbjct: 500 DLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDG 559

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            +V LSN+YA +RRW+ V ++R +MK +G+ K  GCS   ++ + H F VAD++H  +  
Sbjct: 560 AHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADE 619

Query: 523 IYEMLDDLILIMRGAAASP 541
           IYE L +++  ++    SP
Sbjct: 620 IYEKLYEVVSKLKLVGYSP 638



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/473 (28%), Positives = 216/473 (45%), Gaps = 73/473 (15%)

Query: 35  SLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           SL   KQ H+QIL S    S   +   +I++ AL      +  VFN I   + +L N  +
Sbjct: 35  SLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFL 94

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
               ++    + L ++  M    ++ D F+   + K    +K L  G+ IHGL+ K+GF 
Sbjct: 95  RELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFD 154

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            D  +   L+ MY  CG+ +E   +FD+M  R+V +W++ I G+  SG F          
Sbjct: 155 SDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLF---------- 204

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                                   ++AL+LF EM+    +EP+++ L +VL  C     L
Sbjct: 205 ------------------------NDALLLFEEMK-NYNVEPDEMMLSTVLSACGRAGNL 239

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---------------- 317
           S GK IH F +   +  D  L +AL+ MY+ CGS+D A  +FE                 
Sbjct: 240 SYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGY 299

Query: 318 ----------SSFN----KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
                     S FN    KD + WS+++SGY       EA+ L+N+M  LG KPD +T++
Sbjct: 300 SKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTML 359

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            V++AC   G +++   I+   ++         I   +++M  + G L+RA      MP 
Sbjct: 360 SVITACAHLGALDQAKWIH-LFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPR 418

Query: 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLSNLYASS 474
           +   S W  ++SA  MHG++     A +   Q+E EN  P+    +  LYA S
Sbjct: 419 KNVIS-WTCMISAFAMHGDA---GSALRFFHQMEDENIEPNGITFVGVLYACS 467


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 181/498 (36%), Positives = 295/498 (59%), Gaps = 10/498 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K+ H+ I+      + F+ TK++      G+   + L+F  +   + +LYN++I  Y  N
Sbjct: 31  KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 90

Query: 100 HGHNEALELFSNMY-----YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
             +  A+ ++  M       + + PD FT   + K    +   ++G  +HG   K G   
Sbjct: 91  KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           + ++ NSL+ MYVKC    +   +F+EM +R+  SWN  ISGH   G      R+R +F+
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMR---RARAIFE 207

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M+ + +++WTA+++GY + G   +AL  F  MQ+   IEP+++SLVSVLP C+ L  L 
Sbjct: 208 EMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVG-IEPDEISLVSVLPDCAQLGALE 266

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK IH +A +     ++ +CNALI+MY+KCGS+D  RR+F D    +D I+WS+++ G 
Sbjct: 267 LGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLF-DQMKERDVISWSTMIVGL 325

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG+  EA+ L+ +M     +P IIT VG+L+AC  +GL+NEGL  + S+   Y I+P 
Sbjct: 326 ANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPG 385

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+V++LG +G+LD+AL+ +K MP +P   IWG+L+S+   HGN ++  +A + L+
Sbjct: 386 VEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLL 445

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEP +  NYV LSNLYA   +WD V+ +R +M+ + +KK+PGCS I +      F+  D
Sbjct: 446 ELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGD 505

Query: 515 KAHPCSVSIYEMLDDLIL 532
            + P S +I  +L  L++
Sbjct: 506 DSKPFSKAICRVLKLLVM 523



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 144/341 (42%), Gaps = 69/341 (20%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI---- 93
           L KQ H  +   G  SN  V   L+  Y  C     +  VF  +  +D   +N+LI    
Sbjct: 135 LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHV 194

Query: 94  ---------------------------NGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
                                      +GY +   + +ALE F  M    + PD+ +L +
Sbjct: 195 RLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVS 254

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +     ++  L +G  IH  + K GF+ ++ + N+L+ MY KCG   +   LFD+M +R+
Sbjct: 255 VLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERD 314

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           V SW+  I G A+ G      R+R                            EA+ LF E
Sbjct: 315 VISWSTMIVGLANHG------RAR----------------------------EAIELFQE 340

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD--VSLCNALIDMYSK 304
           MQ K +IEP+ ++ V +L  C+    L+ G + +  +++++ N +  V     L+++   
Sbjct: 341 MQ-KAKIEPSIITFVGLLTACAHAGLLNEGLR-YFESMKRDYNIEPGVEHYGCLVNLLGL 398

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
            G LD A  + +      D+  W S++S    HG    AV+
Sbjct: 399 SGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVI 439



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 6/208 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+L K  H      G + N  V   LI  YA CG   Q + +F+ ++ +DV  ++++I 
Sbjct: 264 ALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIV 323

Query: 95  GYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           G + NHG   EA+ELF  M  + + P   T   +         LN G L +  S+K  + 
Sbjct: 324 G-LANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEG-LRYFESMKRDYN 381

Query: 154 VD--VILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVRSR 210
           ++  V     L+++    G+  + L L  +MP++ +   W   +S   S G+  + V + 
Sbjct: 382 IEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAM 441

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLD 238
               +++  +   +  + N Y   G  D
Sbjct: 442 EHLLELEPADTGNYVLLSNLYADLGKWD 469


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 208/575 (36%), Positives = 317/575 (55%), Gaps = 41/575 (7%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTKL 61
           ++S    FA     ++T       L     +  +   K+ H ++L+  ++  NP V  KL
Sbjct: 4   IASLSRYFATARQLSFTEDLCNRILD---QYPDINTLKKLHGKVLNDQYLRWNPSVGIKL 60

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           +  YA CG+P  ++ +F+ I  K+V  +N +I  YV NH + +AL ++  MY     PD 
Sbjct: 61  MRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDM 120

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
           +T   + K S     L VG+ IHG  +KIG  +++ + N L++MY KC    E   + DE
Sbjct: 121 YTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDE 180

Query: 182 MPQRNVGSWNVRISGHASSGDF-----------------------SL-----------VV 207
           +P R+V SWN  +S +A +G F                       SL           V+
Sbjct: 181 IPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVL 240

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
             + +F ++ +++V +W  MI  YV N    EA+VL+ +M+  + +EP+ VS+VSVLP  
Sbjct: 241 YVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQME-ANGVEPDVVSIVSVLPAY 299

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
             L  LS G+++H FA RK+L  ++ L NALIDMY+KCG L  AR VF    F +D ++W
Sbjct: 300 GDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQF-RDVVSW 358

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +SI+S YG  G+G +AV ++ +M   G  PD I  V VL+AC  +GL+++G   +N ++ 
Sbjct: 359 TSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFN-LMA 417

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
              I P  E  ACVVD+LGRAG++D A  FI+ MP+EP   +WG L+SA  ++ N  +  
Sbjct: 418 ECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGI 477

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
           LA   L+ L PE+   YV LSN+YA + RW  VA +R++M+ +G+KK PG S + ++   
Sbjct: 478 LAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGV 537

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           H F   D +HP S  IYE LD L+  M+     P 
Sbjct: 538 HTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPE 572


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 195/508 (38%), Positives = 296/508 (58%), Gaps = 37/508 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L++ K+ H QI  LG  S+ FV   L+  YA CG+  Q+++VF  +  +++  + S+I+G
Sbjct: 185 LEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISG 244

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y +N    EAL +F  M   NV PD   L ++ +   +++DL  G  IHG  +K+G   +
Sbjct: 245 YGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFE 304

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             L  SL +MY KCG+                                  V+ +R  FDQ
Sbjct: 305 PDLLISLTAMYAKCGQ----------------------------------VMVARSFFDQ 330

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M+  NV  W AMI+GY +NG  +EA+ LF EM  K+ I  + +++ S +  C+ +  L  
Sbjct: 331 MEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKN-IRTDSITVRSAILACAQVGSLDL 389

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
            K +  +  + E  +DV +  ALIDM++KCGS+D AR VF D + +KD + WS+++ GYG
Sbjct: 390 AKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVF-DRTLDKDVVVWSAMIVGYG 448

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           LHG+G +A+ L+  M   G  P+ +T VG+L+AC  SGL+ EG E+++S +  Y I+   
Sbjct: 449 LHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHS-MKYYGIEARH 507

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           +  ACVVD+LGR+G L+ A DFI TMP+EP  S+WGAL+ A  ++ +  + + A + L  
Sbjct: 508 QHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFS 567

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           L+P N  +YV LSNLYASSR WD+VA++R +M+++GL K  G S I I+GK   F V DK
Sbjct: 568 LDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDK 627

Query: 516 AHPCSVSIYEMLDDLILIMRGAAASPHL 543
           +HP    I+E L+ L   ++ A   PH+
Sbjct: 628 SHPRFKEIFEELESLERRLKEAGFIPHI 655



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 203/405 (50%), Gaps = 40/405 (9%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H+Q++  G + + F+ TK + A    G+   ++ VF+      V+L+N++I GY  ++
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
              +A+E++S M  S V+PD FTL  + K    +  L VG  +HG   ++GF  DV + N
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQN 208

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
            L+++Y KCG+  +   +F+ +  RN+ SW   ISG+  +G   L + + R+F QM++RN
Sbjct: 209 GLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNG---LPMEALRIFGQMRQRN 265

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
           V                                +P+ ++LVSVL   + +  L  GK IH
Sbjct: 266 V--------------------------------KPDWIALVSVLRAYTDVEDLEQGKSIH 293

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
           G  ++  L  +  L  +L  MY+KCG +  AR  F+      + + W++++SGY  +G  
Sbjct: 294 GCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEI-PNVMMWNAMISGYAKNGYT 352

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
           +EAV L+ +M+    + D IT+   + AC + G ++   +     IN    +    +   
Sbjct: 353 NEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLA-KWMGDYINKTEYRNDVFVNTA 411

Query: 401 VVDMLGRAGQLDRALD-FIKTMPVEPSPSIWGALVSASVMHGNSE 444
           ++DM  + G +D A + F +T+  +    +W A++    +HG  +
Sbjct: 412 LIDMFAKCGSVDLAREVFDRTL--DKDVVVWSAMIVGYGLHGRGQ 454



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 24/200 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S TV+  +   A   SL L K     I    + ++ FV+T LI  +A CG    ++ VF+
Sbjct: 371 SITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFD 430

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI------SKLSGE 133
               KDV +++++I GY  +    +A++LF  M  + V P+D T   +      S L  E
Sbjct: 431 RTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEE 490

Query: 134 IKDLNVGMLIHGLSIK---IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGS 189
             +L   M  +G+  +      VVD++          + G  +E  +    MP +  V  
Sbjct: 491 GWELFHSMKYYGIEARHQHYACVVDLL---------GRSGHLNEAYDFITTMPIEPGVSV 541

Query: 190 WNV-----RISGHASSGDFS 204
           W       +I  H + G+++
Sbjct: 542 WGALLGACKIYRHVTLGEYA 561


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 308/548 (56%), Gaps = 44/548 (8%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  +Q H      G  S+ FV + L+  Y  C Q   +  VF+ +   DV  +++L+ 
Sbjct: 129 ALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVA 188

Query: 95  GYVK---------------------------------NHG--HNEALELFSNMYYSNVSP 119
            Y +                                 NH   ++EA+ +F +M+     P
Sbjct: 189 AYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEP 248

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D  T++++    G+++DL +G+LIHG  IK G V D  ++++L+ MY KC   SE   +F
Sbjct: 249 DGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVF 308

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWTAMINGYVQNG 235
           D+M   +VGS N  I G + +G    V  S R+F Q+K +    NV +WT+MI    QNG
Sbjct: 309 DQMDHMDVGSCNAFIFGLSRNGQ---VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNG 365

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
              EAL LF EMQ+   ++PN V++  +LP C ++  L  GK  H F++R+ ++ DV + 
Sbjct: 366 RDMEALELFREMQIAG-VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVG 424

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           +ALIDMY+KCG +  +R  F D    K+ + W+++++GY +HGK  EA+ +++ M   G 
Sbjct: 425 SALIDMYAKCGRIQASRICF-DGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ 483

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
           KPDII+   VLSAC +SGL  EG   +NS+ + Y I+   E  AC+V +L RAG+L++A 
Sbjct: 484 KPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAY 543

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
             I+ MPV P   +WGAL+S+  +H N  + ++A + L +LEP NP NY+ LSN+YAS  
Sbjct: 544 AMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKG 603

Query: 476 RWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            W+ V  +R MMK++GL+K+PGCSWI +  K H     DK+HP    I E LD L + M+
Sbjct: 604 MWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMK 663

Query: 536 GAAASPHL 543
                P +
Sbjct: 664 KLGYFPEI 671



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 235/480 (48%), Gaps = 47/480 (9%)

Query: 22  TVQHFLQ--VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           +VQH +   +++T  SL  T+Q+H+ IL  G  ++  ++TKL++ YA       + LV +
Sbjct: 13  SVQHTILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLD 72

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +   +V+ +++LI  + K H  + AL  FS M    + PD+  L +  K    +  L  
Sbjct: 73  LVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKP 132

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              +HG++   GF  D  + +SL+ MY+KC +  +   +FD M + +V SW+  ++ +A 
Sbjct: 133 ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYAR 192

Query: 200 SGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
            G    V  ++R+F +M     + N+ +W  MI G+  +G   EA+++FL+M L+   EP
Sbjct: 193 QG---CVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG-FEP 248

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC---------- 305
           +  ++ SVLP    L  L  G  IHG+ I++ L  D  + +ALIDMY KC          
Sbjct: 249 DGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVF 308

Query: 306 ---------------------GSLDCARRVF---EDSSFNKDAITWSSIVSGYGLHGKGH 341
                                G ++ + R+F   +D     + ++W+S+++    +G+  
Sbjct: 309 DQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDM 368

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           EA+ L+ +M   G KP+ +TI  +L ACG    +  G   +   +    I     + + +
Sbjct: 369 EALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRR-GISTDVYVGSAL 427

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           +DM  + G++  +      +P + +   W A+++   MHG ++ + +    L+Q   + P
Sbjct: 428 IDMYAKCGRIQASRICFDGIPTK-NLVCWNAVIAGYAMHGKAK-EAMEIFDLMQRSGQKP 485


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 308/548 (56%), Gaps = 44/548 (8%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  +Q H      G  S+ FV + L+  Y  C Q   +  VF+ +   DV  +++L+ 
Sbjct: 129 ALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVA 188

Query: 95  GYVK---------------------------------NHG--HNEALELFSNMYYSNVSP 119
            Y +                                 NH   ++EA+ +F +M+     P
Sbjct: 189 AYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEP 248

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D  T++++    G+++DL +G+LIHG  IK G V D  ++++L+ MY KC   SE   +F
Sbjct: 249 DGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVF 308

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWTAMINGYVQNG 235
           D+M   +VGS N  I G + +G    V  S R+F Q+K +    NV +WT+MI    QNG
Sbjct: 309 DQMDHMDVGSCNAFIFGLSRNGQ---VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNG 365

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
              EAL LF EMQ+   ++PN V++  +LP C ++  L  GK  H F++R+ ++ DV + 
Sbjct: 366 RDIEALELFREMQIAG-VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVG 424

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           +ALIDMY+KCG +  +R  F D    K+ + W+++++GY +HGK  EA+ +++ M   G 
Sbjct: 425 SALIDMYAKCGRIQASRICF-DGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ 483

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
           KPDII+   VLSAC +SGL  EG   +NS+ + Y I+   E  AC+V +L RAG+L++A 
Sbjct: 484 KPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAY 543

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
             I+ MPV P   +WGAL+S+  +H N  + ++A + L +LEP NP NY+ LSN+YAS  
Sbjct: 544 AMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKG 603

Query: 476 RWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            W+ V  +R MMK++GL+K+PGCSWI +  K H     DK+HP    I E LD L + M+
Sbjct: 604 MWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMK 663

Query: 536 GAAASPHL 543
                P +
Sbjct: 664 KLGYFPEI 671



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 235/480 (48%), Gaps = 47/480 (9%)

Query: 22  TVQH--FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           +VQH  F  +++T  SL  T+Q+H+ IL  G  ++  ++TKL++ YA       + LV +
Sbjct: 13  SVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLD 72

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +   +V+ +++LI  + K H  + AL  FS M    + PD+  L +  K    +  L  
Sbjct: 73  LVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKP 132

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              +HG++   GF  D  + +SL+ MY+KC +  +   +FD M + +V SW+  ++ +A 
Sbjct: 133 ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYAR 192

Query: 200 SGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
            G    V  ++R+F +M     + N+ +W  MI G+  +G   EA+++FL+M L+   EP
Sbjct: 193 QG---CVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRG-FEP 248

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC---------- 305
           +  ++ SVLP    L  L  G  IHG+ I++ L  D  + +ALIDMY KC          
Sbjct: 249 DGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVF 308

Query: 306 ---------------------GSLDCARRVF---EDSSFNKDAITWSSIVSGYGLHGKGH 341
                                G ++ + R+F   +D     + ++W+S+++    +G+  
Sbjct: 309 DQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDI 368

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           EA+ L+ +M   G KP+ +TI  +L ACG    +  G   +   +    I     + + +
Sbjct: 369 EALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRR-GISTDVYVGSAL 427

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           +DM  + G++  +      +P + +   W A+++   MHG ++ + +    L+Q   + P
Sbjct: 428 IDMYAKCGRIQASRICFDGIPTK-NLVCWNAVIAGYAMHGKAK-EAMEIFDLMQRSGQKP 485


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 185/521 (35%), Positives = 295/521 (56%), Gaps = 4/521 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    ++ ++  ++ ++    H   + L    + ++   L+  Y  CG  + ++ +F  I
Sbjct: 128 TFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGI 187

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KDV  +NS+I+ + + +   +ALELF  M   NV P+  T+  +     +  DL  G 
Sbjct: 188 SCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGR 247

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +     + G  VD+ L N+++ MY KCG   +   LFDEMP+R+V SW + + G+A  G
Sbjct: 248 WVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMG 307

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D+     +R VF+ M  + + AW  +I+ Y QNG   EAL +F E+QL    +P++V+LV
Sbjct: 308 DYD---AARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLV 364

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S L  C+ L  +  G  IH +  R+ +  +  L ++L+DMY+KCGSL+ A  VF  S   
Sbjct: 365 STLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFY-SVEE 423

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D   WS++++G G+HG+G  A+ L+ +M     KP+ +T   VL AC  +GL++EG   
Sbjct: 424 RDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVF 483

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++ +   Y + P  +  AC+VD+LGRAG L+ A++ I  M   PS S+WGAL+ A  +H 
Sbjct: 484 FHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHM 543

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ +LA   L++LEP N    V LSN+YA + RW+ V+ELR +M+D  LKK PGCS I
Sbjct: 544 NVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSI 603

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
             +G  H F V D  HP S +IY  L+++   ++     P+
Sbjct: 604 EANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPN 644



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 237/490 (48%), Gaps = 75/490 (15%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT--QSQLVFNSIQHKDVYLYNSL 92
           S K  K+ H+++L  G   +PF ++KL TA AL    T   ++ +F+ I   ++Y +N+L
Sbjct: 37  SSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTL 96

Query: 93  INGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I  Y  +    ++  +F ++       P+ FT   + K + E+K   VG  +HG++IK+ 
Sbjct: 97  IRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLS 156

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F +D+ + NSL+  Y  CG  S    LF  +  ++V SWN                    
Sbjct: 157 FGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWN-------------------- 196

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                         +MI+ + Q    ++AL LFL+M+ ++ + PN V++V VL  C+  +
Sbjct: 197 --------------SMISAFAQGNCPEDALELFLKME-RENVMPNSVTMVGVLSACAKKL 241

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS------------ 319
            L  G+ +  +  RK +  D++LCNA++DMY+KCGS+D A+++F++              
Sbjct: 242 DLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLD 301

Query: 320 --------------FN----KDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDII 360
                         FN    K+   W+ ++S Y  +GK  EA+ ++N++ +   +KPD +
Sbjct: 302 GYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEV 361

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+V  LSAC + G I+ G  I+   I    I     + + +VDM  + G L++AL+   +
Sbjct: 362 TLVSTLSACAQLGAIDLGGWIH-VYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYS 420

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQ-DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
           +  E    +W A+++   MHG  +   DL ++     E +   N V+ +N+  +      
Sbjct: 421 VE-ERDVYVWSAMIAGLGMHGRGKAAIDLFFE---MQEAKVKPNSVTFTNVLCACSHAGL 476

Query: 480 VAELRTMMKD 489
           V E R    +
Sbjct: 477 VDEGRVFFHE 486


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 184/507 (36%), Positives = 301/507 (59%), Gaps = 9/507 (1%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
            K+ H      G +S+ FV   LI AY  C     ++ VF+ +  +DV  + SL + YVK
Sbjct: 183 VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVK 242

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
                + +++F  M +S V P+  T+++I     E+KDL  G  IHG +++ G VV++ +
Sbjct: 243 CGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFV 302

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            ++L+S+Y KC    E   +FD MP R+V SWN  ++ +  + ++    +   +F +M R
Sbjct: 303 CSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYE---KGFSLFLKMSR 359

Query: 219 RNVYA----WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
             V A    W A+I G ++NG  +EA+ +F +MQ K   +PN++++ S+LP CS    L 
Sbjct: 360 DGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ-KMGFKPNEITISSILPACSFSENLR 418

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK+IH +  R     D++   AL+ MY+KCG L+ +R VF D    KD + W++++   
Sbjct: 419 MGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVF-DMMRRKDVVAWNTMIIAN 477

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            +HG G EA+ L++KM+    +P+ +T  GVLS C  S L+ EG++I+NS+   + ++P 
Sbjct: 478 AMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPD 537

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
               +CVVD+  RAG+L+ A  FI+ MP+EP+ S WGAL++A  ++ N E+  ++ K L 
Sbjct: 538 ANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLF 597

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           ++EP NP NYVSL N+  +++ W   +++R +MK+RG+ K+PGCSW+ +  K H F V D
Sbjct: 598 EIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGD 657

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASP 541
           K++  S  IY  LD+L+  M+ A   P
Sbjct: 658 KSNIESDKIYNFLDELVEKMKMAGYKP 684



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 190/419 (45%), Gaps = 71/419 (16%)

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           +LI      G   +++ +F++I   D    ++LI+    +   NEA++++S++    + P
Sbjct: 103 RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 162

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D       +K      D      +H  + + G + DV + N+L+  Y KC        +F
Sbjct: 163 DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 222

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D+                       LVV           R+V +WT++ + YV+ G   +
Sbjct: 223 DD-----------------------LVV-----------RDVVSWTSLSSCYVKCGFPRK 248

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
            + +F EM     ++PN +++ S+LP C+ L  L  GK+IHGFA+R  +  ++ +C+AL+
Sbjct: 249 GMDVFREMGWSG-VKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALV 307

Query: 300 DMYSKCGSLDCARRVFE-------------------DSSFNK---------------DAI 325
            +Y+KC S+  AR VF+                   +  + K               D  
Sbjct: 308 SLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEA 367

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           TW++++ G   +G+  EAV ++ KM  +G KP+ ITI  +L AC  S  +  G EI+  V
Sbjct: 368 TWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYV 427

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
              +++   T   A ++ M  + G L+ + +    M  +   + W  ++ A+ MHGN +
Sbjct: 428 FRHWKVGDLTSTTA-LLYMYAKCGDLNLSRNVFDMMRRKDVVA-WNTMIIANAMHGNGK 484



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 143/348 (41%), Gaps = 71/348 (20%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A  + LK  K+ H   +  G + N FV + L++ YA C    ++++VF+ +
Sbjct: 267 TVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLM 326

Query: 82  QHKDVYLYNSLINGYVKNHGH-----------------------------------NEAL 106
            H+DV  +N ++  Y KN  +                                    EA+
Sbjct: 327 PHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAV 386

Query: 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
           E+F  M      P++ T+++I       ++L +G  IH    +   V D+    +L+ MY
Sbjct: 387 EMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMY 446

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
            KCG  +   N+FD M +++V +WN  I  +A  G                         
Sbjct: 447 AKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHG------------------------- 481

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
             NG        EAL LF +M L  R++PN V+   VL  CS    +  G QI     R 
Sbjct: 482 --NG-------KEALFLFDKMLL-SRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRD 531

Query: 287 EL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
            L   D +  + ++D+YS+ G L+ A +  +       A  W ++++ 
Sbjct: 532 HLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAA 579


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 184/507 (36%), Positives = 301/507 (59%), Gaps = 9/507 (1%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
            K+ H      G +S+ FV   LI AY  C     ++ VF+ +  +DV  + SL + YVK
Sbjct: 97  VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVK 156

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
                + +++F  M +S V P+  T+++I     E+KDL  G  IHG +++ G VV++ +
Sbjct: 157 CGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFV 216

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            ++L+S+Y KC    E   +FD MP R+V SWN  ++ +  + ++    +   +F +M R
Sbjct: 217 CSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYE---KGFSLFLKMSR 273

Query: 219 RNVYA----WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
             V A    W A+I G ++NG  +EA+ +F +MQ K   +PN++++ S+LP CS    L 
Sbjct: 274 DGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ-KMGFKPNEITISSILPACSFSENLR 332

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK+IH +  R     D++   AL+ MY+KCG L+ +R VF D    KD + W++++   
Sbjct: 333 MGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVF-DMMRRKDVVAWNTMIIAN 391

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            +HG G EA+ L++KM+    +P+ +T  GVLS C  S L+ EG++I+NS+   + ++P 
Sbjct: 392 AMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPD 451

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
               +CVVD+  RAG+L+ A  FI+ MP+EP+ S WGAL++A  ++ N E+  ++ K L 
Sbjct: 452 ANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLF 511

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           ++EP NP NYVSL N+  +++ W   +++R +MK+RG+ K+PGCSW+ +  K H F V D
Sbjct: 512 EIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGD 571

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASP 541
           K++  S  IY  LD+L+  M+ A   P
Sbjct: 572 KSNIESDKIYNFLDELVEKMKMAGYKP 598



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 190/419 (45%), Gaps = 71/419 (16%)

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           +LI      G   +++ +F++I   D    ++LI+    +   NEA++++S++    + P
Sbjct: 17  RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 76

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D       +K      D      +H  + + G + DV + N+L+  Y KC        +F
Sbjct: 77  DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D+                       LVV           R+V +WT++ + YV+ G   +
Sbjct: 137 DD-----------------------LVV-----------RDVVSWTSLSSCYVKCGFPRK 162

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
            + +F EM     ++PN +++ S+LP C+ L  L  GK+IHGFA+R  +  ++ +C+AL+
Sbjct: 163 GMDVFREMGWSG-VKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALV 221

Query: 300 DMYSKCGSLDCARRVFE-------------------DSSFNK---------------DAI 325
            +Y+KC S+  AR VF+                   +  + K               D  
Sbjct: 222 SLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEA 281

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           TW++++ G   +G+  EAV ++ KM  +G KP+ ITI  +L AC  S  +  G EI+  V
Sbjct: 282 TWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYV 341

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
              +++   T   A ++ M  + G L+ + +    M  +   + W  ++ A+ MHGN +
Sbjct: 342 FRHWKVGDLTSTTA-LLYMYAKCGDLNLSRNVFDMMRRKDVVA-WNTMIIANAMHGNGK 398



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 143/348 (41%), Gaps = 71/348 (20%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A  + LK  K+ H   +  G + N FV + L++ YA C    ++++VF+ +
Sbjct: 181 TVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLM 240

Query: 82  QHKDVYLYNSLINGYVKNHGH-----------------------------------NEAL 106
            H+DV  +N ++  Y KN  +                                    EA+
Sbjct: 241 PHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAV 300

Query: 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
           E+F  M      P++ T+++I       ++L +G  IH    +   V D+    +L+ MY
Sbjct: 301 EMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMY 360

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
            KCG  +   N+FD M +++V +WN  I  +A  G                         
Sbjct: 361 AKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHG------------------------- 395

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
             NG        EAL LF +M L  R++PN V+   VL  CS    +  G QI     R 
Sbjct: 396 --NG-------KEALFLFDKMLL-SRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRD 445

Query: 287 EL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
            L   D +  + ++D+YS+ G L+ A +  +       A  W ++++ 
Sbjct: 446 HLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAA 493


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  357 bits (917), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 189/516 (36%), Positives = 305/516 (59%), Gaps = 8/516 (1%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNS 91
           ++LK   Q H+Q ++ G  S+ FV++++++  AL   G    ++ +F  I+  D+++ N+
Sbjct: 46  KTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANT 105

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           LI  Y  +    +A+  +S M  S+V  PD  T   + K   EI  L +G  IH    K+
Sbjct: 106 LIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKL 165

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G+  +V ++N L+ MY  CG       +FD  P+ +  SWN+ I G+   G F     +R
Sbjct: 166 GWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFK---SAR 222

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           R+F+ M  R+V +W+ MINGYVQ     E L LF +M + ++IEPN+  LV+ L  C+ L
Sbjct: 223 RMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDM-MGEKIEPNESVLVNALSACAHL 281

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             +  G+ I  +  RK +   V L  ALIDMYSKCGS++ A  VF      K+ + WS++
Sbjct: 282 GAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMK-EKNVLAWSAM 340

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++G  ++G+G +A+ L+++M   G KP+ +T +G+L+AC  S L++EG   ++S+ + Y 
Sbjct: 341 INGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYG 400

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           +KP      C+VD+ GRAG LD+A   IK+MP +P+ +IWGAL++A  +HG++E+ +   
Sbjct: 401 LKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVG 460

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           K L++L+P +   YV LSN+YA+  RWD VAELR MM++R + K+PGCS+I +    H F
Sbjct: 461 KRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEF 520

Query: 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
              D +HP    IY  L ++   ++ A   P  G++
Sbjct: 521 VAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQV 556


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 189/513 (36%), Positives = 296/513 (57%), Gaps = 7/513 (1%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ--H 83
            ++  A  R   + K  H   +      + FV   LI  YA CG    + LVF  I+  +
Sbjct: 246 LIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNN 305

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           KD+  +NS++ G+V+    ++AL+LF  M    V P+  T+ ++     +  +L +G  +
Sbjct: 306 KDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKV 365

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
                +   ++++ + N+ + M+VKCG+      LFD M +R+V SW   I G+A   + 
Sbjct: 366 CDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEH 425

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL-KDRIEPNKVSLVS 262
            +   +R +FD M R+++ AW  +I+GY Q+G   EAL +F E+QL K    P++V+L+S
Sbjct: 426 GI---ARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLS 482

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L  C+ L  +  G+ IHG+  ++ +  + +L  +LIDMYSK G ++ A  VF  S  NK
Sbjct: 483 TLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFH-SIGNK 541

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D   WS++++G  +HG+G  A+ L+  M     KP+ +T   +L AC  SGL++EG  ++
Sbjct: 542 DVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLF 601

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           + +   Y + P T+  +C+VD+LGRAG L+ AL FI+ MP+ PS S+WGAL+ A  +HGN
Sbjct: 602 DEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGN 661

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
            E+ + A   L+++EP N   YV LSNLYA +  W+ V+ELR  M+D GLKK  GCS I 
Sbjct: 662 LELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIE 721

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           I G  H F V D AHP S  IY  LD+++  +R
Sbjct: 722 IDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLR 754



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 221/471 (46%), Gaps = 72/471 (15%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT--QSQLVFNSIQHKDVYLYNSL 92
           S K  KQ H+Q+L    + +P+ +++L TA A         ++ VF+ I   ++Y +N L
Sbjct: 151 SFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNIL 210

Query: 93  INGYVKNHGHNEALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I     +    +++ +F  M + S   P+ FT   + K   E +   VG  +HG++IK  
Sbjct: 211 IRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTS 270

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F  DV + NSL+  Y  CG       +F+ +   N                         
Sbjct: 271 FGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNN------------------------- 305

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                  +++ +W +M+ G+VQ G  D+AL LF  M+  + + PN V++VSV+  C+  +
Sbjct: 306 -------KDIVSWNSMVTGFVQGGYPDKALDLFERMR-NEGVHPNAVTMVSVMSACAKTM 357

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE--------------- 316
            L+ G+++  +  R E+  ++++CNA IDM+ KCG ++ AR +F+               
Sbjct: 358 NLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIID 417

Query: 317 ---------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL--GSKPDI 359
                          DS   KD   W+ ++SGY   G+  EA+ ++ ++     G++PD 
Sbjct: 418 GYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQ 477

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           +T++  LSAC + G ++ G E  +  I   RI+    +   ++DM  ++G +++A++   
Sbjct: 478 VTLLSTLSACAQLGAMDIG-EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFH 536

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           ++       +W A+++   MHG  E     +  L   E +   N V+ +NL
Sbjct: 537 SIG-NKDVFVWSAMIAGLAMHGRGEAAIELF--LDMQETQVKPNSVTFTNL 584


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 184/525 (35%), Positives = 301/525 (57%), Gaps = 4/525 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    ++ +A   SL L +  H   +     S+ FV+  LI  Y  CG    +  VF +I
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KDV  +NS+ING+V+    ++ALELF  M   +V     T+  +     +I++L  G 
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +     +    V++ LAN+++ MY KCG   +   LFD M +++  +W   + G+A S 
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D+     +R V + M ++++ AW A+I+ Y QNG  +EAL++F E+QL+  ++ N+++LV
Sbjct: 313 DYEA---AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S L  C+ +  L  G+ IH +  +  +  +  + +ALI MYSKCG L+ +R VF +S   
Sbjct: 370 STLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF-NSVEK 428

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D   WS+++ G  +HG G+EAV ++ KM     KP+ +T   V  AC  +GL++E   +
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 488

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++ + + Y I P  +  AC+VD+LGR+G L++A+ FI+ MP+ PS S+WGAL+ A  +H 
Sbjct: 489 FHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 548

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N  + ++A   L++LEP N   +V LSN+YA   +W+ V+ELR  M+  GLKK PGCS I
Sbjct: 549 NLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSI 608

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
            I G  H F   D AHP S  +Y  L +++  ++     P + ++
Sbjct: 609 EIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQV 653



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/488 (25%), Positives = 235/488 (48%), Gaps = 75/488 (15%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT--QSQLVFNSIQHKDVYLYNSL 92
           SL+  KQ+H  ++  G  S+P+ ++KL    AL    +   ++ VF+ I   + + +N+L
Sbjct: 42  SLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTL 101

Query: 93  INGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I  Y        ++  F +M   S   P+ +T   + K + E+  L++G  +HG+++K  
Sbjct: 102 IRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA 161

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              DV +ANSL+  Y  CG       +F  + +++V SWN                    
Sbjct: 162 VGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWN-------------------- 201

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                         +MING+VQ G  D+AL LF +M+ +D ++ + V++V VL  C+ + 
Sbjct: 202 --------------SMINGFVQKGSPDKALELFKKMESED-VKASHVTMVGVLSACAKIR 246

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE--------------- 316
            L  G+Q+  +     +N +++L NA++DMY+KCGS++ A+R+F+               
Sbjct: 247 NLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLD 306

Query: 317 ---------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDII 360
                          +S   KD + W++++S Y  +GK +EA+++++++    + K + I
Sbjct: 307 GYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQI 366

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+V  LSAC + G +  G  I+ S I  + I+    + + ++ M  + G L+++ +   +
Sbjct: 367 TLVSTLSACAQVGALELGRWIH-SYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 425

Query: 421 MPVEPSPSIWGALVSASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
           +  +    +W A++    MHG  +E  D+ YK     E     N V+ +N++ +      
Sbjct: 426 VE-KRDVFVWSAMIGGLAMHGCGNEAVDMFYK---MQEANVKPNGVTFTNVFCACSHTGL 481

Query: 480 VAELRTMM 487
           V E  ++ 
Sbjct: 482 VDEAESLF 489



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/426 (18%), Positives = 159/426 (37%), Gaps = 109/426 (25%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS------- 53
           L SA   F  +  ++  S  + +  F+Q  +  ++L+L K+  S+ +   H++       
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 241

Query: 54  ------------------------NPFVSTKLITAYALCGQPTQSQLVF----------- 78
                                   N  ++  ++  Y  CG    ++ +F           
Sbjct: 242 CAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301

Query: 79  --------------------NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NV 117
                               NS+  KD+  +N+LI+ Y +N   NEAL +F  +    N+
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361

Query: 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
             +  TL +      ++  L +G  IH    K G  ++  + ++L+ MY KCG   +   
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           +F+ + +R+V                                  + W+AMI G   +G  
Sbjct: 422 VFNSVEKRDV----------------------------------FVWSAMIGGLAMHGCG 447

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH-----GFAIRKELNHDV 292
           +EA+ +F +MQ +  ++PN V+  +V   CS    +   + +       + I  E  H  
Sbjct: 448 NEAVDMFYKMQ-EANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
                ++D+  + G L+ A +  E          W +++    +H   + A +   +++ 
Sbjct: 507 ----CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLE 562

Query: 353 LGSKPD 358
           L  + D
Sbjct: 563 LEPRND 568


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 200/544 (36%), Positives = 301/544 (55%), Gaps = 44/544 (8%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYLY 89
           SL   KQ H+  L  GH  + +VS  L+  YA    P  S L     VF  + + +V+++
Sbjct: 42  SLHHLKQVHAVALRTGHFQDHYVSGTLVKCYA---NPHFSNLNFALKVFEYVPNPNVFVF 98

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N +I G ++N+   +A+  +  M  ++  P+ FT  T+ K     +    G+ +H   IK
Sbjct: 99  NIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIK 158

Query: 150 IGFV-------------------------------VDVILANSLMSMYVKCGKFSECLNL 178
            G                                  DVI  N+++  Y+KCG+      L
Sbjct: 159 QGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKEL 218

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F  M  +NVGSWNV +SG A  G   ++  +R +F++MK +N  +W+AMI+GY++ G   
Sbjct: 219 FWSMEDKNVGSWNVMVSGMAKCG---MIEEARELFNEMKEKNEISWSAMIDGYIKGGYYK 275

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           EAL +F  MQ ++ I P K  L SVL  C++L  L  G+ IH +      + D  L  AL
Sbjct: 276 EALEVFNVMQ-REEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTAL 334

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           +DMY+KCG LD A  VFE     K+  TW++++ G G+HG+  +A+ L+ KM     +P+
Sbjct: 335 VDMYAKCGRLDMAWDVFEKME-KKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPN 393

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            IT++GVLSAC  SG+++EGL I+NS+   Y I+P  E   CVVD+LGRAG L  A + +
Sbjct: 394 GITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVM 453

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
            +MP+EPS ++WGAL+ A   HG+ E+ +   K L++LEP+N   Y  LSN+YA + RWD
Sbjct: 454 YSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWD 513

Query: 479 AVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
            VA +R +MK+RG+K S G S I   G  H F + D +HP   +IY ML ++I  ++   
Sbjct: 514 DVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEG 573

Query: 539 ASPH 542
            SP+
Sbjct: 574 FSPN 577


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 193/523 (36%), Positives = 291/523 (55%), Gaps = 36/523 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L V      L+  K+ H      G  SN  V+   I AY  CG    S+ VF+ +
Sbjct: 309 TILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLM 368

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             K V  +N+L+ GY +N    +AL+L+  M  S + PD FT+ ++      +K L+ G 
Sbjct: 369 DTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGE 428

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IHG +++ G  VD  +  SL+S+Y+ CGK                              
Sbjct: 429 EIHGFALRNGLAVDPFIGISLLSLYICCGK------------------------------ 458

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
            F+  V    +FD M+ R++ +W  MI GY QNG  DEA+ LF +M L D I+P +++++
Sbjct: 459 PFAAQV----LFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQM-LSDGIQPYEIAIM 513

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
            V   CS L  L  GK++H FA++  L  D+ + +++IDMY+K G +  ++R+F D    
Sbjct: 514 CVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIF-DRLRE 572

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD  +W+ I++GYG+HG+G EA+ L+ KM+ LG KPD  T  G+L AC  +GL+ +GLE 
Sbjct: 573 KDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEY 632

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +N ++N + I+P  E   CVVDMLGRAG++D AL  I+ MP +P   IW +L+S+  +HG
Sbjct: 633 FNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHG 692

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N  + +     L++LEPE P NYV +SNL+A S +WD V  +R  MKD GL+K  GCSWI
Sbjct: 693 NLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWI 752

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
            + GK H F + D+  P    + E    L + +     +P  G
Sbjct: 753 EVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTG 795



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 212/418 (50%), Gaps = 50/418 (11%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFV-STKLITAYALCGQPTQSQLVFNSIQHK 84
            LQ     + +++ ++ H  + +     N FV +T++IT Y++CG P+ S++VF+ ++ K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           +++ +N++++ Y +N    +A+ +FS +   +   PD+FTL  + K    + DL +G +I
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HG++ K+  V DV + N+L++MY KCG   E + +F+ MP+RN+ SWN            
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWN------------ 171

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL-KDRIEPNKVSLVS 262
                                 ++I G+ +NG L E+   F EM + ++   P+  +LV+
Sbjct: 172 ----------------------SIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVT 209

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VLP C+    +  G  +HG A++  LN ++ + N+LIDMYSKC  L  A+ +F D +  K
Sbjct: 210 VLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLF-DKNDKK 268

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS--KPDIITIVGVLSAC-GRSGLINEGL 379
           + ++W+S++ GY           L  KM    +  K D  TI+ VL  C  RS L  + L
Sbjct: 269 NIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSEL--QSL 326

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQL---DRALDFIKTMPVEPSPSIWGALV 434
           +  +     + ++    +    +    R G L   +R  D + T  V    S W AL+
Sbjct: 327 KELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTV----SSWNALL 380



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 183/385 (47%), Gaps = 39/385 (10%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           VT     + T+   ++  A    L L +  H     +  +S+ FV   LI  Y  CG   
Sbjct: 94  VTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE 153

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS--PDDFTLATISKL 130
           ++  VF  +  +++  +NS+I G+ +N    E+   F  M     S  PD  TL T+  +
Sbjct: 154 EAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPV 213

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
               +D+  GM +HGL++K+G   ++++ NSL+ MY KC   SE                
Sbjct: 214 CAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSE---------------- 257

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
                             ++ +FD+  ++N+ +W +MI GY +  D+     L  +MQ +
Sbjct: 258 ------------------AQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTE 299

Query: 251 D-RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
           D +++ ++ ++++VLP C     L   K++HG++ R  L  +  + NA I  Y++CG+L 
Sbjct: 300 DAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALC 359

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            + RVF D    K   +W++++ GY  +    +A+ LY +M   G  PD  TI  +L AC
Sbjct: 360 SSERVF-DLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLAC 418

Query: 370 GRSGLINEGLEIYNSVI-NTYRIKP 393
            R   ++ G EI+   + N   + P
Sbjct: 419 SRMKSLHYGEEIHGFALRNGLAVDP 443



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 96/195 (49%), Gaps = 7/195 (3%)

Query: 263 VLPTCSSLIGLSGGKQIHGF-AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           +L  C     +  G+++H   +   +  +D  L   +I MYS CGS   +R VF D    
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVF-DKLRR 62

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGL- 379
           K+   W++IVS Y  +    +A+ ++++++ +   KPD  T+  V+ AC  +GL++ GL 
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLG 120

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           +I + +     +     +   ++ M G+ G ++ A+   + MP E +   W +++     
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWNSIICGFSE 179

Query: 440 HGNSEMQDLAYKSLI 454
           +G  +    A++ ++
Sbjct: 180 NGFLQESFNAFREML 194


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 188/521 (36%), Positives = 298/521 (57%), Gaps = 6/521 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L + A  R+    +Q H+ ++      N  V T+L+  Y+ CG+   ++ +FN +
Sbjct: 481 TFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRM 540

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             ++ Y +NS+I GY +N    EAL LF  M  + + PD F+L+++      + D   G 
Sbjct: 541 AERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGR 600

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   ++     + IL   L+ MY KCG       ++D+  +++V   NV +S   +SG
Sbjct: 601 ELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSG 660

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
             +    ++ +FDQM++RN   W +++ GY   G   E+   FLEM L+  IE + +++V
Sbjct: 661 RAN---DAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEM-LESDIEYDVLTMV 716

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           +++  CSSL  L  G Q+H   I+K   N  V L  AL+DMYSKCG++  AR VF D+  
Sbjct: 717 TIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVF-DNMN 775

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            K+ ++W++++SGY  HG   EA++LY +M   G  P+ +T + +LSAC  +GL+ EGL 
Sbjct: 776 GKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLR 835

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           I+ S+   Y I+   E   C+VD+LGRAG+L+ A +F++ MP+EP  S WGAL+ A  +H
Sbjct: 836 IFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVH 895

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
            + +M  LA + L +L+P+NP  YV +SN+YA++ RW  V ++R MMK +G+KK PG SW
Sbjct: 896 KDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSW 955

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           I I+ +   F    K HP +  IY  L  L L  +G    P
Sbjct: 956 IEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIP 996



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 130/438 (29%), Positives = 210/438 (47%), Gaps = 47/438 (10%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q  S ++  G   N FV   L+  YA  G    +    + I+   V  +N++I GYVK 
Sbjct: 195 RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI 254

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               EA  +F  M    V PD+FT A+  ++ G ++  + G  +H   I  GF  D  + 
Sbjct: 255 LSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVG 314

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+L+ MY KC     CL +FDEM +RN  +WN  IS  A  G F                
Sbjct: 315 NALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHF---------------- 358

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
                             ++ALVLFL MQ +   + N+ +L S+L   + L  +  G+++
Sbjct: 359 ------------------NDALVLFLRMQ-ESGYKSNRFNLGSILMASAGLADIGKGREL 399

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           HG  +R  LN D+ L +AL+DMYSKCG ++ A +VF  S   ++ ++++++++GY   GK
Sbjct: 400 HGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFR-SLLERNEVSYNALLAGYVQEGK 458

Query: 340 GHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN---TYRIKPTT 395
             EA+ LY+ M    G +PD  T   +L+ C      N+G +I+  +I    T  I   T
Sbjct: 459 AEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVET 518

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           E+    V M    G+L+ A +    M  E +   W +++     +G ++     +K + Q
Sbjct: 519 EL----VHMYSECGRLNYAKEIFNRM-AERNAYSWNSMIEGYQQNGETQEALRLFKQM-Q 572

Query: 456 LEPENPSNYVSLSNLYAS 473
           L    P  + SLS++ +S
Sbjct: 573 LNGIKPDCF-SLSSMLSS 589



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 223/462 (48%), Gaps = 45/462 (9%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V   N+T A+    L+V    RS    KQ HS++++ G   + FV   LI  YA C    
Sbjct: 272 VCPDNFTFASA---LRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEE 328

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
               VF+ +  ++   +NS+I+   +    N+AL LF  M  S    + F L +I   S 
Sbjct: 329 SCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASA 388

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            + D+  G  +HG  ++     D+IL ++L+ MY KCG   E   +F  + +RN  S+N 
Sbjct: 389 GLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYN- 447

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                                            A++ GYVQ G  +EAL L+ +MQ +D 
Sbjct: 448 ---------------------------------ALLAGYVQEGKAEEALELYHDMQSEDG 474

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           I+P++ +  ++L  C++    + G+QIH   IR  +  ++ +   L+ MYS+CG L+ A+
Sbjct: 475 IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAK 534

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
            +F   +  ++A +W+S++ GY  +G+  EA+ L+ +M   G KPD  ++  +LS+C   
Sbjct: 535 EIFNRMA-ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSL 593

Query: 373 GLINEGLEIYNSVI-NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
               +G E++N ++ NT   +   ++   +VDM  + G +D A   +    ++    +  
Sbjct: 594 SDSQKGRELHNFIVRNTMEEEGILQV--VLVDMYAKCGSMDYAWK-VYDQTIKKDVILNN 650

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
            +VSA V   NS   + A     Q+E  N + + S+   YA+
Sbjct: 651 VMVSAFV---NSGRANDAKNLFDQMEQRNTALWNSILAGYAN 689



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 199/433 (45%), Gaps = 69/433 (15%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           S+  + + L+  Y+ CG   ++  VF S+  ++   YN+L+ GYV+     EALEL+ +M
Sbjct: 410 SDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDM 469

Query: 113 YYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
              + + PD FT  T+  L    ++ N G  IH   I+     ++I+   L+ MY +CG+
Sbjct: 470 QSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGR 529

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
            +    +F+ M +RN  SWN  I G                                  Y
Sbjct: 530 LNYAKEIFNRMAERNAYSWNSMIEG----------------------------------Y 555

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QNG+  EAL LF +MQL + I+P+  SL S+L +C SL     G+++H F +R  +  +
Sbjct: 556 QQNGETQEALRLFKQMQL-NGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEE 614

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI-------------------------- 325
             L   L+DMY+KCGS+D A +V+ D +  KD I                          
Sbjct: 615 GILQVVLVDMYAKCGSMDYAWKVY-DQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQME 673

Query: 326 -----TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
                 W+SI++GY   G   E+   + +M+    + D++T+V +++ C     +  G +
Sbjct: 674 QRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQ 733

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           +++ +I    +  +  +   +VDM  + G + +A      M  +   S W A++S    H
Sbjct: 734 LHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVS-WNAMISGYSKH 792

Query: 441 GNSEMQDLAYKSL 453
           G S+   + Y+ +
Sbjct: 793 GCSKEALILYEEM 805



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 185/413 (44%), Gaps = 41/413 (9%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCG---QPTQSQLVFNSIQHKDVYLYNS 91
           S +  K  H+Q++S G+  + ++ TK++  YA  G       ++ +F  +  +++  +N+
Sbjct: 86  SFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNT 145

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I  Y +   + E L L+  M  S    D FT  ++ K    ++D+     +    +K G
Sbjct: 146 MILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAG 205

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              ++ +  +L+  Y + G   + +   DE            I G +             
Sbjct: 206 LNCNLFVGGALVDGYARFGWMDDAVTSLDE------------IEGTS------------- 240

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                    V  W A+I GYV+    +EA  +F  M LK  + P+  +  S L  C +L 
Sbjct: 241 ---------VVTWNAVIAGYVKILSWEEAWGIFDRM-LKIGVCPDNFTFASALRVCGALR 290

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
              GGKQ+H   I      D  + NALIDMY+KC   +   +VF D    ++ +TW+SI+
Sbjct: 291 SRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVF-DEMGERNQVTWNSII 349

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           S     G  ++A++L+ +M   G K +   +  +L A      I +G E++  ++    +
Sbjct: 350 SAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL-L 408

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
                + + +VDM  + G ++ A    +++ +E +   + AL++  V  G +E
Sbjct: 409 NSDIILGSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALLAGYVQEGKAE 460



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 124/264 (46%), Gaps = 12/264 (4%)

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +A SG    +  +R++F++M  RN+ AW  MI  Y +  D  E L L+  M+       +
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNF-SD 174

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           K +  SV+  C ++  + G +Q+    ++  LN ++ +  AL+D Y++ G +D A    +
Sbjct: 175 KFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLD 234

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           +       +TW+++++GY       EA  ++++M+ +G  PD  T    L  CG     +
Sbjct: 235 EIE-GTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRD 293

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G ++++ +I     K  T +   ++DM  +    +  L     M  E +   W +++SA
Sbjct: 294 GGKQVHSKLI-ACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMG-ERNQVTWNSIISA 351

Query: 437 SVMHGNS--------EMQDLAYKS 452
               G+          MQ+  YKS
Sbjct: 352 EAQFGHFNDALVLFLRMQESGYKS 375


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  354 bits (908), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 285/510 (55%), Gaps = 4/510 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    ++ ++    L   K  H  ++ +   S+ F+   LI  YA CG+      VF +I
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNI 197

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +DV  +NS+I  +V+     EALELF  M   NV P+  T+  +     +  D   G 
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H    +      + L+N+++ MY KCG   +   LFD+MP++++ SW   + G+A  G
Sbjct: 258 WVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           ++     ++ +FD M  +++ AW A+I+ Y Q G   EAL LF E+QL    +P++V+LV
Sbjct: 318 EYD---AAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLV 374

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S L  C+ L  +  G  IH +  ++ +  +  L  +LIDMY KCG L  A  VF  S   
Sbjct: 375 STLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFH-SVER 433

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD   WS++++G  +HG G +A+ L++KM     KP+ +T   +L AC   GL+ EG   
Sbjct: 434 KDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTF 493

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +N +   Y + P  +  AC+VD+LGRAG L+ A++ I+ MP+ P+ S+WGAL+ A  +H 
Sbjct: 494 FNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHE 553

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N  + + A   LI+LEP N   YV LSN+YA + +WD V+ LR +M+D GLKK PGCS I
Sbjct: 554 NVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSI 613

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
            + G  H F V D +HP +  IY  LD+++
Sbjct: 614 EVDGIVHEFLVGDNSHPSAKKIYAKLDEIV 643



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 139/490 (28%), Positives = 239/490 (48%), Gaps = 73/490 (14%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT--QSQLVFNSIQHKDVYLYNSLIN 94
           K  KQ H+Q+L  G   +PF +++LITA AL   P+   +Q VF+ I H ++Y +N+LI 
Sbjct: 49  KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108

Query: 95  GYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            Y  +   +++L +F  M + +   PD FT   + K + E+++L  G   HG+ IK+   
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLG 168

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV + NSL+  Y KCG+      +F  +P+R+V SWN                      
Sbjct: 169 SDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWN---------------------- 206

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                       +MI  +VQ G  +EAL LF EM+ ++ ++PN +++V VL  C+     
Sbjct: 207 ------------SMITAFVQGGCPEEALELFQEMETQN-VKPNGITMVGVLSACAKKSDF 253

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE----------------- 316
             G+ +H +  R  +   ++L NA++DMY+KCGS++ A+R+F+                 
Sbjct: 254 EFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGY 313

Query: 317 -------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITI 362
                        D+  N+D   W++++S Y   GK  EA+ L++++ +   +KPD +T+
Sbjct: 314 AKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTL 373

Query: 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
           V  LSAC + G ++ G  I+   I    +K    +   ++DM  + G L +AL    ++ 
Sbjct: 374 VSTLSACAQLGAMDLGGWIH-VYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVE 432

Query: 423 VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482
                 +W A+++   MHG+ +   +A  S +Q +   P N V+ +N+  +      V E
Sbjct: 433 -RKDVFVWSAMIAGLAMHGHGK-DAIALFSKMQEDKVKP-NAVTFTNILCACSHVGLVEE 489

Query: 483 LRTMMKDRGL 492
            RT      L
Sbjct: 490 GRTFFNQMEL 499


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 190/536 (35%), Positives = 312/536 (58%), Gaps = 11/536 (2%)

Query: 6   ARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           A N FAL   R    + ++   +VSA +  L++    H     LG + +PF+ T LI  Y
Sbjct: 113 AINAFAL--DRFSFPSLLKAVSKVSAFNHGLEI----HGLASKLGFVDDPFIQTGLIAMY 166

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125
           A C +   ++L+F+ + H D   +N +I+GY +N  +++AL LF +M  S++ PD   L 
Sbjct: 167 ASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILC 226

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           T+    G   +L+ G  IH      G+ +D  L  +L++MY  CG       ++D +  +
Sbjct: 227 TVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSK 286

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
           ++      +SG+A  G   +V  +R +FDQM  R++  W+AMI+GY ++    EAL LF 
Sbjct: 287 HLIVSTAMLSGYAKLG---MVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFD 343

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
           EM L+ R  P++++++SV+  CS +  L+    IH +  R      +S+ NALIDMY+KC
Sbjct: 344 EM-LQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKC 402

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           G+L  AR VFE+    K+ I+WSS+++ + +HG    A+ L+ +M  +  +P+ +T +GV
Sbjct: 403 GNLVKAREVFENMP-RKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGV 461

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L ACG +GL+ EG ++++S+IN + I PT E   C+VD+  RA  L +A++ I+TMP  P
Sbjct: 462 LYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAP 521

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485
           +  IWG+L+SA  +HG +E+ + A K L++LEP++    V LSN+YA  +RW+ V  +R 
Sbjct: 522 NVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRK 581

Query: 486 MMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            M  +G+ K    S I I+ + H F +AD+ H  S  IYE LD+++  ++     P
Sbjct: 582 SMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKP 637



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 4/204 (1%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VF Q+   + +    ++    ++   ++ + L+  ++  +    ++ S  S+L   S + 
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
             + G +IHG A +     D  +   LI MY+ C  +  AR +F D   + DA+ W+ I+
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLF-DKMCHPDAVAWNMII 194

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYR 390
            GY  +G   +A+ L+  M     KPD + +  VLSACG +G ++ G  I+  V  N Y 
Sbjct: 195 DGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYA 254

Query: 391 IKPTTEICACVVDMLGRAGQLDRA 414
           I   + +   +++M    G +D A
Sbjct: 255 ID--SHLQTALINMYANCGAMDLA 276


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 182/486 (37%), Positives = 286/486 (58%), Gaps = 37/486 (7%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           S+ +V T LI+ Y+ CG+  + +++F+ I   D+  YN++I+GY  NH    A+ LF  +
Sbjct: 247 SDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFREL 306

Query: 113 YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
             S    +  TL  +  +      L +  LI  LS+KIG ++   ++ +L ++Y +  + 
Sbjct: 307 LASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEV 366

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                LFDE P++++ SWN  IS                                  GY 
Sbjct: 367 QFARQLFDESPEKSLASWNAMIS----------------------------------GYT 392

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG  D A+ LF EM    ++ PN V++ S+L  C+ L  LS GK +HG    + L  +V
Sbjct: 393 QNGLTDRAISLFQEMM--PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNV 450

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            +  AL+DMY+KCGS+  AR++F D   +K+ +TW+++++GYGLHG G EA+ L+ +M+ 
Sbjct: 451 YVSTALVDMYAKCGSIVEARQLF-DLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQ 509

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G  P  +T + +L AC  SGL++EG EI++S+ N Y  +P +E  AC+VD+LGRAGQL 
Sbjct: 510 SGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLT 569

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            AL+FI+ MP+EP P++WGAL+ A ++H N+EM ++A K L QL+PEN   YV LSN+Y+
Sbjct: 570 NALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYS 629

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           + R +   A +R ++K R L K+PGC+ I I  + + F+  D++HP + +I+EML+ L  
Sbjct: 630 TDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTG 689

Query: 533 IMRGAA 538
            MR A 
Sbjct: 690 KMREAG 695



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 198/430 (46%), Gaps = 54/430 (12%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY-SNV 117
           TKL   +   G     + +FN +   D++L+N LI G+  N     ++ L++++   +N+
Sbjct: 50  TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNL 109

Query: 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
            PD+FT A     +  ++D  VG+L+H  SI  G   ++ + ++++ +Y K  +      
Sbjct: 110 RPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARK 169

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           +FD MP+R+   WN                                   MI+G+ +N   
Sbjct: 170 VFDVMPERDTVLWN----------------------------------TMISGFSRNSYF 195

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
           ++++ +F++M L   +  +  +L +VL   + L     G  I   A +K L+ DV +   
Sbjct: 196 EDSIRVFVDM-LDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTG 254

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           LI +YSKCG   C  R+  D     D I++++++SGY  + +   AV L+ +++  G + 
Sbjct: 255 LISLYSKCGK-SCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 358 DIITIVGVLSA------CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
           +  T+VG++           S LI + L +   +I    ++P+  +   +  +  R  ++
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLI-QNLSLKIGII----LQPS--VSTALTTVYCRLNEV 366

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
             A       P E S + W A++S    +G   + D A     ++ P+   N V+++++ 
Sbjct: 367 QFARQLFDESP-EKSLASWNAMISGYTQNG---LTDRAISLFQEMMPQLSPNPVTVTSIL 422

Query: 472 ASSRRWDAVA 481
           ++  +  A++
Sbjct: 423 SACAQLGALS 432



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 139/327 (42%), Gaps = 37/327 (11%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L + +   S+T+   + V      L+L++   +  L +G I  P VST L T Y    + 
Sbjct: 307 LASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEV 366

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             ++ +F+    K +  +N++I+GY +N   + A+ LF  M    +SP+  T+ +I    
Sbjct: 367 QFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSAC 425

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
            ++  L++G  +HGL        +V ++ +L+ MY KCG   E   LFD M  +NV +WN
Sbjct: 426 AQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWN 485

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                                             AMI GY  +G   EAL LF EM L+ 
Sbjct: 486 ----------------------------------AMITGYGLHGHGKEALKLFYEM-LQS 510

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQI-HGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
            I P  V+ +S+L  CS    +S G +I H  A              ++D+  + G L  
Sbjct: 511 GIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTN 570

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLH 337
           A    E          W +++    +H
Sbjct: 571 ALEFIERMPLEPGPAVWGALLGACMIH 597


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/486 (37%), Positives = 286/486 (58%), Gaps = 37/486 (7%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           S+ +V T LI+ Y+ CG+  + +++F+ I   D+  YN++I+GY  NH    A+ LF  +
Sbjct: 247 SDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFREL 306

Query: 113 YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
             S    +  TL  +  +      L +  LI  LS+KIG ++   ++ +L ++Y +  + 
Sbjct: 307 LASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEV 366

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                LFDE P++++ SWN  IS                                  GY 
Sbjct: 367 QFARQLFDESPEKSLASWNAMIS----------------------------------GYT 392

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG  D A+ LF EM    ++ PN V++ S+L  C+ L  LS GK +HG    + L  +V
Sbjct: 393 QNGLTDRAISLFQEMM--PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNV 450

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            +  AL+DMY+KCGS+  AR++F D   +K+ +TW+++++GYGLHG G EA+ L+ +M+ 
Sbjct: 451 YVSTALVDMYAKCGSIVEARQLF-DLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQ 509

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G  P  +T + +L AC  SGL++EG EI++S+ N Y  +P +E  AC+VD+LGRAGQL 
Sbjct: 510 SGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLT 569

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            AL+FI+ MP+EP P++WGAL+ A ++H N+EM ++A K L QL+PEN   YV LSN+Y+
Sbjct: 570 NALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYS 629

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           + R +   A +R ++K R L K+PGC+ I I  + + F+  D++HP + +I+EML+ L  
Sbjct: 630 TDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTG 689

Query: 533 IMRGAA 538
            MR A 
Sbjct: 690 KMREAG 695



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 198/430 (46%), Gaps = 54/430 (12%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNV 117
           TKL   +   G     + +FN +   D++L+N LI G+  N     ++ L++++   +N+
Sbjct: 50  TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNL 109

Query: 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
            PD+FT A     +  ++D  VG+L+H  SI  G   ++ + ++++ +Y K  +      
Sbjct: 110 RPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARK 169

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           +FD MP+R+   WN                                   MI+G+ +N   
Sbjct: 170 VFDVMPERDTVLWN----------------------------------TMISGFSRNSYF 195

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
           ++++ +F++M L   +  +  +L +VL   + L     G  I   A +K L+ DV +   
Sbjct: 196 EDSIRVFVDM-LDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTG 254

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           LI +YSKCG   C  R+  D     D I++++++SGY  + +   AV L+ +++  G + 
Sbjct: 255 LISLYSKCGK-SCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 358 DIITIVGVLSA------CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
           +  T+VG++           S LI + L +   +I    ++P+  +   +  +  R  ++
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLI-QNLSLKIGII----LQPS--VSTALTTVYCRLNEV 366

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
             A       P E S + W A++S    +G   + D A     ++ P+   N V+++++ 
Sbjct: 367 QFARQLFDESP-EKSLASWNAMISGYTQNG---LTDRAISLFQEMMPQLSPNPVTVTSIL 422

Query: 472 ASSRRWDAVA 481
           ++  +  A++
Sbjct: 423 SACAQLGALS 432



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 139/327 (42%), Gaps = 37/327 (11%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L + +   S+T+   + V      L+L++   +  L +G I  P VST L T Y    + 
Sbjct: 307 LASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEV 366

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             ++ +F+    K +  +N++I+GY +N   + A+ LF  M    +SP+  T+ +I    
Sbjct: 367 QFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSAC 425

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
            ++  L++G  +HGL        +V ++ +L+ MY KCG   E   LFD M  +NV +WN
Sbjct: 426 AQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWN 485

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                                             AMI GY  +G   EAL LF EM L+ 
Sbjct: 486 ----------------------------------AMITGYGLHGHGKEALKLFYEM-LQS 510

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQI-HGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
            I P  V+ +S+L  CS    +S G +I H  A              ++D+  + G L  
Sbjct: 511 GIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTN 570

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLH 337
           A    E          W +++    +H
Sbjct: 571 ALEFIERMPLEPGPAVWGALLGACMIH 597


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 310/548 (56%), Gaps = 36/548 (6%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           +V   +  +K  K  HS++ +L    NP +  KL+ AYA  G+P  ++ VF+ I  ++V 
Sbjct: 40  KVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVI 99

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            YN +I  Y+ NH +++AL +F +M     SPD +T   + K      +L +G+ +HG  
Sbjct: 100 FYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAV 159

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF---- 203
            K+G  +++ + N L+++Y KCG   E   + DEM  ++V SWN  ++G+A +  F    
Sbjct: 160 FKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDAL 219

Query: 204 -------------------SL-----------VVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
                              SL           V+    +F  ++++++ +W  MI+ Y++
Sbjct: 220 DICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMK 279

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           N    +++ L+L+M  K  +EP+ ++  SVL  C  L  L  G++IH +  RK+L  ++ 
Sbjct: 280 NSMPGKSVDLYLQMG-KCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNML 338

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L N+LIDMY++CG L+ A+RVF+   F +D  +W+S++S YG+ G+G+ AV L+ +M   
Sbjct: 339 LENSLIDMYARCGCLEDAKRVFDRMKF-RDVASWTSLISAYGMTGQGYNAVALFTEMQNS 397

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G  PD I  V +LSAC  SGL+NEG   +  + + Y+I P  E  AC+VD+LGR+G++D 
Sbjct: 398 GQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDE 457

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A + IK MP++P+  +WGAL+S+  ++ N ++  LA   L+QL PE    YV LSN+YA 
Sbjct: 458 AYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAK 517

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
           + RW  V  +R++MK R ++K PG S + ++ + H F   D  HP S  IYE L  L+  
Sbjct: 518 AGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGK 577

Query: 534 MRGAAASP 541
           M+     P
Sbjct: 578 MKELGYVP 585



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 165/373 (44%), Gaps = 52/373 (13%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  +   +L++  Q H  +  +G   N FV   LI  Y  CG   +++ V + +Q KDV
Sbjct: 140 LKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDV 199

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT----ISKLSGE----IKDLN 138
             +NS++ GY +N   ++AL++   M      PD  T+A+    ++  S E    ++++ 
Sbjct: 200 VSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMF 259

Query: 139 VGMLIHGLSIKIGFVVDVILANSL----MSMYVKCGK-------------FSECLNLFDE 181
           + +    L +    ++ V + NS+    + +Y++ GK                C +L   
Sbjct: 260 MNLEKKSL-VSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSAL 318

Query: 182 MPQRNVGSW-------------NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           +  R +  +             N  I  +A  G    +  ++RVFD+MK R+V +WT++I
Sbjct: 319 LLGRRIHEYVERKKLCPNMLLENSLIDMYARCG---CLEDAKRVFDRMKFRDVASWTSLI 375

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK-----QIHGFA 283
           + Y   G    A+ LF EMQ   +  P+ ++ V++L  CS    L+ GK         + 
Sbjct: 376 SAYGMTGQGYNAVALFTEMQNSGQ-SPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYK 434

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           I   + H       L+D+  + G +D A  + +      +   W +++S   ++      
Sbjct: 435 ITPIIEHFA----CLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIG 490

Query: 344 VLLYNKMVCLGSK 356
           +L  +K++ L  +
Sbjct: 491 ILAADKLLQLAPE 503


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 182/438 (41%), Positives = 276/438 (63%), Gaps = 5/438 (1%)

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           LE ++ M++  +  D+FTL  + K   ++  + +G  +HG  +++G   D  +  SL+ M
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           YVKCG   +   LFD+M  R++ SWN  I+G+   G+  +   +  +F++M+ RN+ +WT
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGV---AEDLFERMEHRNIVSWT 208

Query: 226 AMINGYVQNGDLDEALVLFLEM-QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           AMI+GY QNG  ++AL LF EM Q    ++PN V++VSVLP C+    L  G++IH FA 
Sbjct: 209 AMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFAN 268

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN-KDAITWSSIVSGYGLHGKGHEA 343
              L+ + S+  AL  MY+KC SL  AR  F+  + N K+ I W+++++ Y  HG G EA
Sbjct: 269 GIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEA 328

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           V ++  M+  G +PD +T +G+LS C  SGLI+ GL  +N +   + ++P  E  ACVVD
Sbjct: 329 VSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVD 388

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           +LGRAG+L  A + I  MP++  PS+WGAL++A   H N E+ +LA + L  LEP+N  N
Sbjct: 389 LLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGN 448

Query: 464 YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSI 523
           YV LSNLYA +  W+ V +LR ++K +G+KKSPGCSWI I+GK+H F  ADK+HP +  I
Sbjct: 449 YVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEI 508

Query: 524 YEMLDDLILIMRGAAASP 541
           Y+ L+ L   ++ A   P
Sbjct: 509 YKFLEALPEKIKMAGYIP 526



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 11/203 (5%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY--SNVS 118
           LI  Y   G+   ++ +F  ++H+++  + ++I+GY +N    +AL LF  M    S + 
Sbjct: 179 LIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMK 238

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           P+  T+ ++     +   L  G  IH  +  IG  ++  +  +L  MY KC    E    
Sbjct: 239 PNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCC 298

Query: 179 FDEMPQ--RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV----YAWTAMINGYV 232
           FD + Q  +N+ +WN  I+ +AS G     V +  +F+ M R  V      +  +++G  
Sbjct: 299 FDMIAQNGKNLIAWNTMITAYASHG---CGVEAVSIFENMLRAGVQPDAVTFMGLLSGCS 355

Query: 233 QNGDLDEALVLFLEMQLKDRIEP 255
            +G +D  L  F +M     +EP
Sbjct: 356 HSGLIDAGLNHFNDMGTIHSVEP 378


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 188/513 (36%), Positives = 296/513 (57%), Gaps = 13/513 (2%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L +  Q H+ +    + ++ ++ + LI  Y+ CG    ++ VF+ +  +++  +NSLI  
Sbjct: 163 LNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITC 222

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG-FVV 154
           Y +N   +EALE+F  M  S + PD+ TLA++      +  L  G+ IH   +K   F  
Sbjct: 223 YEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRD 282

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D++L N+L+ MY KC K +E   +FD M  RNV S    +SG+A +     V  +R +F 
Sbjct: 283 DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAAS---VKAARFMFS 339

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M +RNV +W A+I GY QNG+ +EAL LF  ++ ++ I P   +  ++L  C++L  L 
Sbjct: 340 KMTQRNVVSWNALIAGYTQNGENEEALRLFRLLK-RESIWPTHYTFGNLLSACANLADLL 398

Query: 275 GGKQIH------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            G+Q H      GF  +     D+ + N+LIDMY KCGS++   RVFE     +D ++W+
Sbjct: 399 LGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-ERDCVSWN 457

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +I+ GY  +G G EA+ ++ KM+  G KPD +T++GVL AC  +GL+ EG   + S +  
Sbjct: 458 AIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFS-MEE 516

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           + + P  +   C+VD+LGRAG L+ A + I+ MPV P   +WG+L++A  +HGN EM   
Sbjct: 517 HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKH 576

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
           A + L++++P N   YV LSN+YA   RW  V  +R +M+ +G+ K PGCSWI +  + H
Sbjct: 577 AAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVH 636

Query: 509 CFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            F V DK+HP    IY +L  L   M+     P
Sbjct: 637 VFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIP 669



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 154/282 (54%), Gaps = 5/282 (1%)

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           L+H   +   F +++ + N L+ +Y KC    +   LFD MPQRN  +WN  IS    SG
Sbjct: 36  LVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSG 95

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
               +  + R+F  M   +  +W +M++G+ Q+   +E+L  F++M  +D +  N+ S  
Sbjct: 96  ---FLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFL-LNEYSFG 151

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S L  C+ L+ L+ G Q+H    +   + DV + +ALIDMYSKCGS+ CA  VF      
Sbjct: 152 SALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVF-SGMIE 210

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           ++ +TW+S+++ Y  +G   EA+ ++ +M+  G +PD +T+  V+SAC     + EGL+I
Sbjct: 211 RNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQI 270

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
           +  V+ T + +    +   +VDM  +  +++ A      M +
Sbjct: 271 HARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 176/363 (48%), Gaps = 50/363 (13%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    LI+     G   ++  +F S+   D   +NS+++G+ ++    E+LE F  M+
Sbjct: 80  NTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMH 139

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
             +   ++++  +       + DLN+G  +H L  K  +  DV + ++L+ MY KCG  +
Sbjct: 140 REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
               +F  M +RN+ +WN                                  ++I  Y Q
Sbjct: 200 CAEEVFSGMIERNLVTWN----------------------------------SLITCYEQ 225

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-KELNHDV 292
           NG   EAL +F+ M +   +EP++V+L SV+  C+SL  L  G QIH   ++  +   D+
Sbjct: 226 NGPASEALEVFVRM-MDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDL 284

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            L NAL+DMY+KC  ++ ARRVF+  S  ++ ++ +S+VSGY        A  +++KM  
Sbjct: 285 VLGNALVDMYAKCSKVNEARRVFDRMSI-RNVVSETSMVSGYARAASVKAARFMFSKM-- 341

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-------TEICACVVD-M 404
             ++ ++++   +++   ++G   E L ++  ++    I PT          CA + D +
Sbjct: 342 --TQRNVVSWNALIAGYTQNGENEEALRLFR-LLKRESIWPTHYTFGNLLSACANLADLL 398

Query: 405 LGR 407
           LGR
Sbjct: 399 LGR 401



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 11/162 (6%)

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
           ++D   PN      +L +C       G + +H   +  + + ++ + N LID+Y KC  L
Sbjct: 7   VRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCL 66

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
           D AR++F D    ++  TW+S++S     G   EA  L+  M     +PD  +   ++S 
Sbjct: 67  DDARKLF-DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSM----PEPDQCSWNSMVSG 121

Query: 369 CGRSGLINEGLEIY------NSVINTYRIKPTTEICACVVDM 404
             +     E LE +      + ++N Y        CA ++D+
Sbjct: 122 FAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDL 163


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 184/520 (35%), Positives = 295/520 (56%), Gaps = 36/520 (6%)

Query: 9   TFALVTSRNYTSA-TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
           T  L  SRN     T    L+  A     K+ K  H Q++     S+ ++ T L+  YA 
Sbjct: 67  TEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAA 126

Query: 68  CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           CG    ++ +F  + H++  ++ S+I+GY+KNH  NEAL L+  M     SPD+ T+AT+
Sbjct: 127 CGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATL 186

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
                E+KDL VGM +H    ++   +  +L ++L++MY KCG                 
Sbjct: 187 VSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKT------------- 233

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
                                +R+VFDQ+  ++VYAW+A+I GYV+N    EAL LF E+
Sbjct: 234 ---------------------ARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREV 272

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
                + PN+V++++V+  C+ L  L  G+ +H +  R +  H VSL N+LIDM+SKCG 
Sbjct: 273 AGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGD 332

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           +D A+R+F+  S+ KD I+W+S+V+G  LHG G EA+  ++ M     +PD IT +GVL+
Sbjct: 333 IDAAKRIFDSMSY-KDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLT 391

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           AC  +GL+ EG +++  +   Y ++  +E   C+VD+L RAG L  A +FI+ MP++P  
Sbjct: 392 ACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDG 451

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
           +IWG+++ A  ++ N E+ + A + L++LEP N   Y+ LSN+YA  + W+ V ++R +M
Sbjct: 452 AIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELM 511

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
            ++G++K+PGCS + I    H F   D +HP    I  ML
Sbjct: 512 NEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIML 551



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 175/364 (48%), Gaps = 51/364 (14%)

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN-----------------------VGS 189
           V+DV+  NS++  +V        L  + EM +R+                       VG 
Sbjct: 40  VLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGK 99

Query: 190 -----------------WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                                ++ +A+ GD      +R +F++M  RN   WT+MI+GY+
Sbjct: 100 VLHGQVVKYMLHSDLYIETTLLNMYAACGDLK---SARFLFERMGHRNKVVWTSMISGYM 156

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           +N   +EAL+L+ +M+ +D   P++V++ +++  C+ L  L  G ++H      ++    
Sbjct: 157 KNHCPNEALLLYKKME-EDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICA 215

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            L +AL++MY+KCG L  AR+VF+  S +KD   WS+++ GY  + +  EA+ L+ + V 
Sbjct: 216 VLGSALVNMYAKCGDLKTARQVFDQLS-DKDVYAWSALIFGYVKNNRSTEALQLFRE-VA 273

Query: 353 LGS--KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
            GS  +P+ +TI+ V+SAC + G +  G  +++ +  T +   +  +   ++DM  + G 
Sbjct: 274 GGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQK-GHSVSLNNSLIDMFSKCGD 332

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           +D A     +M  +   S W ++V+   +HG    + LA   L+Q     P     +  L
Sbjct: 333 IDAAKRIFDSMSYKDLIS-WNSMVNGLALHGLGR-EALAQFHLMQTTDLQPDEITFIGVL 390

Query: 471 YASS 474
            A S
Sbjct: 391 TACS 394



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 3/232 (1%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VF   +  +V  W +M+  +V +     AL  + EM  + R  P++ +  S+L  C+ L+
Sbjct: 34  VFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
               GK +HG  ++  L+ D+ +   L++MY+ CG L  AR +FE    +++ + W+S++
Sbjct: 94  EFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMG-HRNKVVWTSMI 152

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           SGY  +   +EA+LLY KM   G  PD +T+  ++SAC     +  G++++ S I    +
Sbjct: 153 SGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLH-SHIREMDM 211

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           K    + + +V+M  + G L  A      +  +     W AL+   V +  S
Sbjct: 212 KICAVLGSALVNMYAKCGDLKTARQVFDQLS-DKDVYAWSALIFGYVKNNRS 262


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 281/508 (55%), Gaps = 42/508 (8%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LKL  Q H+ +L  G      V +K++  YA  G    S  VFN I              
Sbjct: 86  LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIG------------- 132

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
                                   D FT   + K S E+  + +G  +HGL ++IG   D
Sbjct: 133 ------------------------DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD 168

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + +A SL+ +Y KCG+ ++   +FD M  R+V SWN  ++G+  SG    +  +  +F++
Sbjct: 169 LYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSG---CIDAALAIFER 225

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLS 274
           M  RN+ +WT MI+GY Q+G   +AL LF EM  +D  + PN V+++SVLP C+ L  L 
Sbjct: 226 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 285

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN-KDAITWSSIVSG 333
            G+QIH  A R  LN + S+  AL  MY+KCGSL  AR  F+  + N K+ I W+++++ 
Sbjct: 286 RGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITA 345

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y  +G G +AV  + +M+  G +PD IT  G+LS C  SGL++ GL+ +N +  TY I P
Sbjct: 346 YASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINP 405

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             E  ACV D+LGRAG+L  A   +  MP+   PSIWG+L++A   H N EM + A + L
Sbjct: 406 RVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKL 465

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
             LEPEN  NYV LSN+YA + RW  V +LR ++K +G KKSPGCSWI I+GK H F   
Sbjct: 466 FVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGG 525

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASP 541
           D +HP    IY  L+ L   M+ A   P
Sbjct: 526 DTSHPQGKEIYMFLEALPEKMKAAGYFP 553



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 117/270 (43%), Gaps = 36/270 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+ S    S+ + K  H  IL +G   + +V+T LI  Y  CG+   +  VF+++
Sbjct: 136 TFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNM 195

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN------------------------- 116
             +DV  +N+L+ GY K+   + AL +F  M + N                         
Sbjct: 196 TIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFD 255

Query: 117 --------VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
                   V P+  T+ ++     ++  L  G  IH L+ ++G   +  +  +L +MY K
Sbjct: 256 EMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAK 315

Query: 169 CGKFSECLNLFDEM--PQRNVGSWNVRISGHASSG-DFSLVVRSRRVFDQMKRRNVYAWT 225
           CG   +  N FD++   ++N+ +WN  I+ +AS G     V   R +     + +   +T
Sbjct: 316 CGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFT 375

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
            +++G   +G +D  L  F  M     I P
Sbjct: 376 GLLSGCSHSGLVDVGLKYFNHMSTTYSINP 405



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A   +L+  +Q H     +G  SN  V   L   YA CG    ++  F+ +
Sbjct: 270 TIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKL 329

Query: 82  --QHKDVYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
               K++  +N++I  Y  ++GH  +A+  F  M  + + PDD T   +         ++
Sbjct: 330 NRNEKNLIAWNTMITAYA-SYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVD 388

Query: 139 VGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISG 196
           VG+   + +S        V     +  +  + G+ +E   L  EMP     S W   ++ 
Sbjct: 389 VGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAA 448

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
                +  +   + R    ++  N   +  + N Y + G   E
Sbjct: 449 CRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQE 491


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 181/501 (36%), Positives = 297/501 (59%), Gaps = 5/501 (0%)

Query: 45  QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
            ++ LG  S+ FV   +I     CG+   ++ +F+    +D+  +NS+INGYV+    +E
Sbjct: 180 HVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADE 239

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           A +L+  M   NV PD+ T+  +   S ++++L +G  +H    ++G  + V LAN+LM 
Sbjct: 240 AFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMD 299

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MY+KC        LF+ M ++ V SW   + G+A    F L+  + R+F++M  ++V  W
Sbjct: 300 MYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAK---FGLLESAVRLFNEMPEKDVVLW 356

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            A+I G+VQ     EAL LF EMQ    + P+K+++V+ L  CS L  L  G  +H +  
Sbjct: 357 NALIGGFVQAKRSKEALALFHEMQ-ASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVD 415

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           +  L  +V+L  AL+DMY+KCG++  A +VFE+    ++++TW++I+ G  LHG+ H A+
Sbjct: 416 KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMP-GRNSLTWTAIICGLALHGQPHAAI 474

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
             +++M+ +G  PD IT +GVLSAC   GL+++G + +  + + Y I P  +  +C+VD+
Sbjct: 475 SYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDL 534

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           LGRAG L+ A + I++MP EP   +WGAL   S +HGN  M + A   L++L+P +   Y
Sbjct: 535 LGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIY 594

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           V L+N+Y  +  W+   ++R MM++RG++K+PGCS I ++G  + F + DK+HP S  IY
Sbjct: 595 VLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIY 654

Query: 525 EMLDDLILIMRGAAASPHLGK 545
           E L  L   +      P L K
Sbjct: 655 ECLTRLTRQIEVIEVDPSLFK 675



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 207/444 (46%), Gaps = 76/444 (17%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYLY 89
           S+   K+ H+Q++S G IS+ F  ++L+   A C       L     + N+  + +V+ +
Sbjct: 66  SMAKMKEIHAQMISTGLISDGFALSRLV---AFCAISEWRNLDYCDKILNNAANLNVFSW 122

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           N  I GYV++     A+ L+ NM     + PD++T   + K+            I G  I
Sbjct: 123 NMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVI 182

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           ++GF  D+ + N+++ + V CG+      LFDE   R++ SWN                 
Sbjct: 183 QLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWN----------------- 225

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
                            ++INGYV+ G  DEA  L+ +M  +  + P++V+++ V+   +
Sbjct: 226 -----------------SIINGYVRCGLADEAFDLYYKMG-ELNVMPDEVTMIGVVSASA 267

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS--------- 319
            L  L+ G+++H       LN  V L NAL+DMY KC +++ A+ +FE+ +         
Sbjct: 268 QLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTT 327

Query: 320 -----------------FN----KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
                            FN    KD + W++++ G+    +  EA+ L+++M      PD
Sbjct: 328 MVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPD 387

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            IT+V  LSAC + G ++ G+ +++ V + + +     +   +VDM  + G + +A+   
Sbjct: 388 KITVVNCLSACSQLGALDVGIWMHHYV-DKHNLTMNVALGTALVDMYAKCGNIKKAIQVF 446

Query: 419 KTMPVEPSPSIWGALVSASVMHGN 442
           + MP   S + W A++    +HG 
Sbjct: 447 EEMPGRNSLT-WTAIICGLALHGQ 469



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 10/259 (3%)

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           ++ +     NV++W   I GYV++ +   A++L+  M  K    P+  +   +   C+  
Sbjct: 109 KILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGF 168

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
                  +I G  I+   + D+ + NA+I +   CG L  AR++F++S   +D ++W+SI
Sbjct: 169 SLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCV-RDLVSWNSI 227

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++GY   G   EA  LY KM  L   PD +T++GV+SA  +   +  G +++ S I    
Sbjct: 228 INGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQS-IEEMG 286

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           +  T  +   ++DM  +   ++ A    + M  +   S W  +V      G  E      
Sbjct: 287 LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVS-WTTMVIGYAKFGLLE------ 339

Query: 451 KSLIQLEPENPSNYVSLSN 469
            S ++L  E P   V L N
Sbjct: 340 -SAVRLFNEMPEKDVVLWN 357


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 181/501 (36%), Positives = 297/501 (59%), Gaps = 5/501 (0%)

Query: 45  QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
            ++ LG  S+ FV   +I     CG+   ++ +F+    +D+  +NS+INGYV+    +E
Sbjct: 180 HVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADE 239

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           A +L+  M   NV PD+ T+  +   S ++++L +G  +H    ++G  + V LAN+LM 
Sbjct: 240 AFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMD 299

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MY+KC        LF+ M ++ V SW   + G+A    F L+  + R+F++M  ++V  W
Sbjct: 300 MYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAK---FGLLESAVRLFNEMPEKDVVLW 356

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            A+I G+VQ     EAL LF EMQ    + P+K+++V+ L  CS L  L  G  +H +  
Sbjct: 357 NALIGGFVQAKRSKEALALFHEMQ-ASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVD 415

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           +  L  +V+L  AL+DMY+KCG++  A +VFE+    ++++TW++I+ G  LHG+ H A+
Sbjct: 416 KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMP-GRNSLTWTAIICGLALHGQPHAAI 474

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
             +++M+ +G  PD IT +GVLSAC   GL+++G + +  + + Y I P  +  +C+VD+
Sbjct: 475 SYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDL 534

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           LGRAG L+ A + I++MP EP   +WGAL   S +HGN  M + A   L++L+P +   Y
Sbjct: 535 LGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIY 594

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           V L+N+Y  +  W+   ++R MM++RG++K+PGCS I ++G  + F + DK+HP S  IY
Sbjct: 595 VLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIY 654

Query: 525 EMLDDLILIMRGAAASPHLGK 545
           E L  L   +      P L K
Sbjct: 655 ECLTRLTRQIEVIEVDPSLFK 675



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 206/444 (46%), Gaps = 76/444 (17%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYLY 89
           S+   K+ H+Q++S G IS+ F  ++L+   A C       L     + N+  + + + +
Sbjct: 66  SMAKMKEIHAQMISTGLISDGFALSRLV---AFCAISEWRNLDYCDKILNNAANLNXFSW 122

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           N  I GYV++     A+ L+ NM     + PD++T   + K+            I G  I
Sbjct: 123 NMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVI 182

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           ++GF  D+ + N+++ + V CG+      LFDE   R++ SWN                 
Sbjct: 183 QLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWN----------------- 225

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
                            ++INGYV+ G  DEA  L+ +M  +  + P++V+++ V+   +
Sbjct: 226 -----------------SIINGYVRCGLADEAFDLYYKMG-ELNVMPDEVTMIGVVSASA 267

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS--------- 319
            L  L+ G+++H       LN  V L NAL+DMY KC +++ A+ +FE+ +         
Sbjct: 268 QLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTT 327

Query: 320 -----------------FN----KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
                            FN    KD + W++++ G+    +  EA+ L+++M      PD
Sbjct: 328 MVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPD 387

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            IT+V  LSAC + G ++ G+ +++ V + + +     +   +VDM  + G + +A+   
Sbjct: 388 KITVVNCLSACSQLGALDVGIWMHHYV-DKHNLTMNVALGTALVDMYAKCGNIKKAIQVF 446

Query: 419 KTMPVEPSPSIWGALVSASVMHGN 442
           + MP   S + W A++    +HG 
Sbjct: 447 EEMPGRNSLT-WTAIICGLALHGQ 469



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 10/259 (3%)

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           ++ +     N ++W   I GYV++ +   A++L+  M  K    P+  +   +   C+  
Sbjct: 109 KILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGF 168

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
                  +I G  I+   + D+ + NA+I +   CG L  AR++F++S   +D ++W+SI
Sbjct: 169 SLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCV-RDLVSWNSI 227

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++GY   G   EA  LY KM  L   PD +T++GV+SA  +   +  G +++ S I    
Sbjct: 228 INGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQS-IEEMG 286

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           +  T  +   ++DM  +   ++ A    + M  +   S W  +V      G  E      
Sbjct: 287 LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVS-WTTMVIGYAKFGLLE------ 339

Query: 451 KSLIQLEPENPSNYVSLSN 469
            S ++L  E P   V L N
Sbjct: 340 -SAVRLFNEMPEKDVVLWN 357


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 183/520 (35%), Positives = 295/520 (56%), Gaps = 36/520 (6%)

Query: 9   TFALVTSRNYTSA-TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
           T  L  SRN     T    L+  A     K+ K  H Q++     S+ ++ T L+  YA 
Sbjct: 67  TEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAA 126

Query: 68  CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           CG    ++ +F  + H++  ++ S+I+GY+KNH  NEAL L+  M     SPD+ T+AT+
Sbjct: 127 CGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATL 186

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
                E+KDL VGM +H    ++   +  +L ++L++MY KCG                 
Sbjct: 187 VSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKT------------- 233

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
                                +R+VFD++  ++VYAW+A+I GYV+N    EAL LF E+
Sbjct: 234 ---------------------ARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREV 272

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
                + PN+V++++V+  C+ L  L  G+ +H +  R +  H VSL N+LIDM+SKCG 
Sbjct: 273 AGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGD 332

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           +D A+R+F+  S+ KD I+W+S+V+G+ LHG G EA+  +  M     +PD IT +GVL+
Sbjct: 333 IDAAKRIFDSMSY-KDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLT 391

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           AC  +GL+ EG +++  +   Y ++  +E   C+VD+L RAG L  A +FI+ MP++P  
Sbjct: 392 ACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDG 451

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
           +IWG+++ A  ++ N E+ + A + L++LEP N   Y+ LSN+YA  + W+ V ++R +M
Sbjct: 452 AIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELM 511

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
            ++G++K+PGCS + I    H F   D +HP    I  ML
Sbjct: 512 NEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIML 551



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 3/232 (1%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VF   +  +V  W +M+  +V +     AL  + EM  + R  P++ +  S+L  C+ L+
Sbjct: 34  VFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
               GK +HG  ++  L+ D+ +   L++MY+ CG L  AR +FE    +++ + W+S++
Sbjct: 94  EFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMG-HRNKVVWTSMI 152

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           SGY  +   +EA+LLY KM   G  PD +T+  ++SAC     +  G++++ S I    +
Sbjct: 153 SGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLH-SHIREMDM 211

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           K    + + +V+M  + G L  A      +  +     W AL+   V +  S
Sbjct: 212 KICAVLGSALVNMYAKCGDLKTARQVFDKLS-DKDVYAWSALIFGYVKNNRS 262


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 179/517 (34%), Positives = 309/517 (59%), Gaps = 9/517 (1%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           S  YTS+     L   A   SL+  KQ H+Q++      +P+V++ L+  YA CG   ++
Sbjct: 270 STTYTSS-----LTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEA 324

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI 134
           + VFNS+  ++   +  LI G++++    E++ELF+ M    ++ D F LAT+       
Sbjct: 325 KGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSR 384

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
            DL +G  +H L +K G +  V+++NSL+SMY KC       ++F  M ++++ SW   I
Sbjct: 385 MDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMI 444

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           + H+  G+   + ++R  FD M  +NV  W AM+  Y+Q+G  ++ L ++  M  +  + 
Sbjct: 445 TAHSQVGN---IAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVR 501

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+ V+ V++   C+ L     G QI G  ++  L  D S+ NA+I MYSKCG +  AR+V
Sbjct: 502 PDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKV 561

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F+  +  KD ++W+++++GY  HG G +A+ +++ ++  G+KPD I+ V VLS C  SGL
Sbjct: 562 FDFLNV-KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGL 620

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           + EG   ++ +   + I P  E  +C+VD+LGRAG L  A D I  MP++P+  +WGAL+
Sbjct: 621 VQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALL 680

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
           SA  +HGN+E+ +LA K + +L+  +  +Y+ ++ +YA + + D  A++R +M+D+G+KK
Sbjct: 681 SACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKK 740

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           +PG SW+ ++ K H F   D +HP  ++I + LD+L+
Sbjct: 741 NPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELM 777



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 226/478 (47%), Gaps = 43/478 (8%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK--LITAYALCGQPTQSQLVFNSIQH 83
           FLQ +  H  L       ++ L L  I++P V T   ++  Y   G+ + +  +F  +  
Sbjct: 40  FLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPA 99

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGML 142
           +DV  +N+L++GY ++  +  +LE F +M+ S + SP+ FT A   K  G + + ++ + 
Sbjct: 100 RDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQ 159

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           + G+  K G   D  +A +L+ M+V+CG       LF  + +  +   N  + G+  +  
Sbjct: 160 LLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYG 219

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V  +  +FD M  R+V +W  M++   Q+G + EAL + ++MQ K  +  +  +  S
Sbjct: 220 ---VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG-VRLDSTTYTS 275

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L  C+ L  L  GKQ+H   IR     D  + +AL+++Y+KCG    A+ VF +S  ++
Sbjct: 276 SLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVF-NSLHDR 334

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC--------GR--- 371
           + + W+ +++G+  HG   E+V L+N+M       D   +  ++S C        GR   
Sbjct: 335 NNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 394

Query: 372 -----SGLINEGLEIYNSVINTY-------------RIKPTTEICA--CVVDMLGRAGQL 411
                SG I + + + NS+I+ Y             R     +I +   ++    + G +
Sbjct: 395 SLCLKSGQI-QAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNI 453

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS--NYVSL 467
            +A +F   M  +   + W A++ A + HG  E     Y  ++  +   P    YV+L
Sbjct: 454 AKAREFFDGMSTKNVIT-WNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTL 510



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/472 (22%), Positives = 191/472 (40%), Gaps = 103/472 (21%)

Query: 33  HRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL 92
            RSL L  Q    +   G   +  V+  L+  +  CG    +  +F  I+   ++  NS+
Sbjct: 153 ERSLAL--QLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSM 210

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD---------------- 136
           + GYVK +G + ALELF +M   +V   +  ++ +S+ SG +++                
Sbjct: 211 LVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQ-SGRVREALDMVVDMQSKGVRLD 269

Query: 137 ----------------LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
                           L  G  +H   I+    +D  +A++L+ +Y KCG F E   +F+
Sbjct: 270 STTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFN 329

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            +  RN  +W V I+G                                  ++Q+G   E+
Sbjct: 330 SLHDRNNVAWTVLIAG----------------------------------FLQHGCFTES 355

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           + LF +M+  + +  ++ +L +++  C S + L  G+Q+H   ++      V + N+LI 
Sbjct: 356 VELFNQMR-AELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLIS 414

Query: 301 MYSKCGSLDCARRVFE------------------------------DSSFNKDAITWSSI 330
           MY+KC +L  A  +F                               D    K+ ITW+++
Sbjct: 415 MYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAM 474

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           +  Y  HG   + + +YN M+     +PD +T V +   C   G    G +I    +   
Sbjct: 475 LGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVG 534

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
            I  T+ +   V+ M  + G++  A      + V+   S W A+++    HG
Sbjct: 535 LILDTS-VANAVITMYSKCGRILEARKVFDFLNVKDIVS-WNAMITGYSQHG 584



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 140/330 (42%), Gaps = 38/330 (11%)

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF-DEMPQRNVGSWNVRISGHASSGD 202
           HG  + +G    V L N+L+  Y+ CG   +   L   ++   NV + NV ++G+   G 
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
            S  V    +F +M  R+V +W  +++GY Q+     +L  F+ M       PN  +   
Sbjct: 87  LSDAVE---LFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAY 143

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------ 316
            + +C +L   S   Q+ G   +     D  +  AL+DM+ +CG++D A R+F       
Sbjct: 144 AMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPT 203

Query: 317 ------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
                                   DS   +D ++W+ +VS     G+  EA+ +   M  
Sbjct: 204 IFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQS 263

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRIKPTTEICACVVDMLGRAGQL 411
            G + D  T    L+AC R   +  G +++  VI N   I P   + + +V++  + G  
Sbjct: 264 KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPY--VASALVELYAKCGCF 321

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             A     ++  + +   W  L++  + HG
Sbjct: 322 KEAKGVFNSLH-DRNNVAWTVLIAGFLQHG 350



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 33/188 (17%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +    L +C +   L+G + +HG  +   L   V L N L+  Y  CG+L  ARR+    
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL------------------------- 353
             + + IT + +++GY   G+  +AV L+ +M                            
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 354 -------GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
                   S P+  T    + +CG  G  +  L++   ++  +  +  +++ A +VDM  
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLG-MVQKFGSQDDSDVAAALVDMFV 184

Query: 407 RAGQLDRA 414
           R G +D A
Sbjct: 185 RCGTVDLA 192


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 185/514 (35%), Positives = 291/514 (56%), Gaps = 12/514 (2%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q HS I     +S+ ++ + L+  Y+ CG    +Q VF+ +  ++V  +NSLI  + +N 
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNG 232

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILA 159
              EAL++F  M  S V PD+ TLA++      +  + VG  +HG  +K   +  D+IL+
Sbjct: 233 PAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILS 292

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+ + MY KC +  E   +FD MP RNV +    ISG+A +        +R +F +M  R
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAAS---TKAARLMFTKMAER 349

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV +W A+I GY QNG+ +EAL LF  ++ ++ + P   S  ++L  C+ L  L  G Q 
Sbjct: 350 NVVSWNALIAGYTQNGENEEALSLFCLLK-RESVCPTHYSFANILKACADLAELHLGMQA 408

Query: 280 H------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           H      GF  +     D+ + N+LIDMY KCG ++    VF      +D ++W++++ G
Sbjct: 409 HVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR-KMMERDCVSWNAMIIG 467

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           +  +G G+EA+ L+ +M+  G KPD IT++GVLSACG +G + EG   ++S+   + + P
Sbjct: 468 FAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAP 527

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             +   C+VD+LGRAG L+ A   I+ MP++P   IWG+L++A  +H N  +     + L
Sbjct: 528 LRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKL 587

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           +++EP N   YV LSN+YA   +W+ V  +R  M+  G+ K PGCSWI I G  H F V 
Sbjct: 588 LEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVK 647

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
           DK+HP    I+ +LD LI  MR       +G ++
Sbjct: 648 DKSHPRKKQIHSLLDILIAEMRPEQDHTEIGSLS 681



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 151/281 (53%), Gaps = 5/281 (1%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H   IK GF  ++ + N L+  Y KCG   +   +FD+MPQRN+ +WN  ++G    G 
Sbjct: 42  VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLG- 100

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              +  +  +F  M  R+   W +M++G+ Q+   +EAL  F  M  K+    N+ S  S
Sbjct: 101 --FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMH-KEGFVLNEYSFAS 157

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL  CS L  ++ G Q+H    +     DV + +AL+DMYSKCG+++ A+RVF D   ++
Sbjct: 158 VLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVF-DEMGDR 216

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           + ++W+S+++ +  +G   EA+ ++  M+    +PD +T+  V+SAC     I  G E++
Sbjct: 217 NVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVH 276

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
             V+   +++    +    VDM  +  ++  A     +MP+
Sbjct: 277 GRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 184/373 (49%), Gaps = 74/373 (19%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+ ++  G  +  F+  +LI AY+ CG     + VF+ +  +++Y +NS++ G  K    
Sbjct: 43  HASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFL 102

Query: 103 NEALELFSNM--------------------------YYSNVSPDDFTL------ATISKL 130
           +EA  LF +M                          Y++ +  + F L      + +S  
Sbjct: 103 DEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSAC 162

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
           SG + D+N G+ +H L  K  F+ DV + ++L+ MY KCG  ++   +FDEM  RNV SW
Sbjct: 163 SG-LNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           N                                  ++I  + QNG   EAL +F +M L+
Sbjct: 222 N----------------------------------SLITCFEQNGPAVEALDVF-QMMLE 246

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLD 309
            R+EP++V+L SV+  C+SL  +  G+++HG  ++ + L +D+ L NA +DMY+KC  + 
Sbjct: 247 SRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIK 306

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            AR +F DS   ++ I  +S++SGY +      A L++ KM    ++ ++++   +++  
Sbjct: 307 EARFIF-DSMPIRNVIAETSMISGYAMAASTKAARLMFTKM----AERNVVSWNALIAGY 361

Query: 370 GRSGLINEGLEIY 382
            ++G   E L ++
Sbjct: 362 TQNGENEEALSLF 374



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 32/195 (16%)

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE-------------------- 316
           + +H   I+   ++++ + N LID YSKCGSL+  R+VF+                    
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 317 ------DSSF----NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
                 DS F     +D  TW+S+VSG+  H +  EA+  +  M   G   +  +   VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           SAC     +N+G++++ S+I          I + +VDM  + G ++ A      M     
Sbjct: 160 SACSGLNDMNKGVQVH-SLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNV 218

Query: 427 PSIWGALVSASVMHG 441
            S W +L++    +G
Sbjct: 219 VS-WNSLITCFEQNG 232


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 185/522 (35%), Positives = 291/522 (55%), Gaps = 22/522 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+ H LQ+             H+ +   G   +P ++ KL  +YA  G+   S  +F 
Sbjct: 40  SKTISHLLQI-------------HAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFG 86

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
             Q+  V+ + ++I+G+     H +AL  ++ M    V P+ FT ++I KL      +  
Sbjct: 87  RTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEP 142

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +H  ++K+GF  D+ +   L+ +Y + G       LFD MP++++ S    ++ +A 
Sbjct: 143 GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAK 202

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
            G+      +R +FD M+ R+   W  MI+GY QNG  +EALVLF  M LK + +PN+V+
Sbjct: 203 HGELD---AARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM-LKAKAKPNEVT 258

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           ++SVL  C  L  L  G+ +H +     +  +V +  AL+DMYSKCGSL+ AR VF D  
Sbjct: 259 VLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVF-DKI 317

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            +KD + W+S++ GY +HG   EA+ L+  M  +G  P  IT +G+LSACG SG + EG 
Sbjct: 318 DDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGW 377

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           +I+N + + Y I+P  E   C+V++LGRAG +++A + +K M +EP P +WG L+ A  +
Sbjct: 378 DIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRL 437

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           HG   + +   + L+     N   Y+ LSN+YA+   WD VA LRTMMKD G+KK PGCS
Sbjct: 438 HGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCS 497

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            I ++ K H F      HP    IY ML+++   ++    +P
Sbjct: 498 SIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTP 539


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  350 bits (899), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 193/558 (34%), Positives = 304/558 (54%), Gaps = 74/558 (13%)

Query: 30  SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
           SATH++    KQ H+++L LG   + F+ TKLI A +  G  T ++ VF+ +    ++ +
Sbjct: 30  SATHKAQ--LKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPW 87

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N++I GY +N+   +AL ++SNM  + VSPD FT   + K    +  L +G  +H    +
Sbjct: 88  NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147

Query: 150 IGFVVDVILANSLMSMYVKC---------------------------------GKFSECL 176
           +GF  DV + N L+++Y KC                                 G+  E L
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207

Query: 177 NLFDEMPQRNVG-SWNVRISG----------------HASSGDFSL-------------- 205
            +F +M + +V   W   +S                 HAS     L              
Sbjct: 208 EIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267

Query: 206 -----VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                V  ++ +FD+MK  N+  W AMI+GY +NG   EA+ +F EM  KD + P+ +S+
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD-VRPDTISI 326

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            S +  C+ +  L   + ++ +  R +   DV + +ALIDM++KCGS++ AR VF D + 
Sbjct: 327 TSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVF-DRTL 385

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           ++D + WS+++ GYGLHG+  EA+ LY  M   G  P+ +T +G+L AC  SG++ EG  
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            +N + + ++I P  +  ACV+D+LGRAG LD+A + IK MPV+P  ++WGAL+SA   H
Sbjct: 446 FFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
            + E+ + A + L  ++P N  +YV LSNLYA++R WD VAE+R  MK++GL K  GCSW
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564

Query: 501 ISIHGKTHCFSVADKAHP 518
           + + G+   F V DK+HP
Sbjct: 565 VEVRGRLEAFRVGDKSHP 582


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 195/537 (36%), Positives = 304/537 (56%), Gaps = 40/537 (7%)

Query: 6   ARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           AR   A V+   ++   V   L+  +   +L++ ++ H QI   G  S+ FV   L+  Y
Sbjct: 162 ARMQVACVSPDGFSFPCV---LKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALY 218

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125
           A CG+  ++  VF  +  + +  + S+I+GY +N    EAL +FS M  +NV PD   L 
Sbjct: 219 AKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALV 278

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           ++ +   +++DL  G  IHG  IK+G   +  L  SL S+Y KCG               
Sbjct: 279 SVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGH-------------- 324

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
                               V+ +R  F+Q++  ++  W AMI+GYV+NG  +EA+ LF 
Sbjct: 325 --------------------VMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFR 364

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
            M+ K+ I P+ +++ S +  C+ +  L   + +  +    E  +DV +  +LID Y+KC
Sbjct: 365 LMKSKN-IRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKC 423

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           GS+D AR VF D   +KD + WS+++ GYGLHG+G E+++L++ M   G  P+ +T VG+
Sbjct: 424 GSVDMARFVF-DRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGL 482

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L+AC  SGL+ EG ++++  +  Y I+P  +  ACVVD+LGRAG LDRA +F+  MP+EP
Sbjct: 483 LTACKNSGLVEEGWDLFHR-MRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEP 541

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485
             S+WGAL+SA  +H +  + + A + L  L+P N  +YV LSNLYASS  WD VA++R 
Sbjct: 542 GVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRV 601

Query: 486 MMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           +M+++GL K  G S I I+GK   F   DK HP S  I+E ++DL   ++ A   PH
Sbjct: 602 LMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPH 658



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/455 (24%), Positives = 209/455 (45%), Gaps = 41/455 (9%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q ++++L  G     F+  KL+   +  G+ + ++ +F+     DV+L+N+++  Y ++ 
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
               A+E+++ M  + VSPD F+   + K    +  L +G  +HG   + GF  DV + N
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
            L+++Y KCG+      +F  +  R + SW   ISG+A +G     + + R+F +M++ N
Sbjct: 213 GLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQ---PIEALRIFSEMRKTN 269

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
           V                                 P+ ++LVSVL   + +  L  GK IH
Sbjct: 270 V--------------------------------RPDWIALVSVLRAYTDVEDLEHGKSIH 297

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
           G  I+  L  +  L  +L  +Y+KCG +  AR  F     N   I W++++SGY  +G  
Sbjct: 298 GCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVE-NPSLIFWNAMISGYVKNGYA 356

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            EA+ L+  M     +PD IT+   ++AC + G + E     +  I+    +    +   
Sbjct: 357 EEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSL-ELARWMDEYISMSEFRNDVIVNTS 415

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEP 458
           ++D   + G +D A      +P +    +W A++    +HG      + + ++ Q  + P
Sbjct: 416 LIDTYAKCGSVDMARFVFDRIP-DKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSP 474

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
            N   +V L     +S   +   +L   M+D G++
Sbjct: 475 -NDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIE 508


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 183/517 (35%), Positives = 291/517 (56%), Gaps = 10/517 (1%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           T  +L   ++ HS I   G  ++  V+  LIT Y  C    +++ +F+ +  +DV  +++
Sbjct: 270 TPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSA 329

Query: 92  LINGYVKN-----HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
           +I GY ++        +E  +L   M    V P+  T  +I +       L  G  IH  
Sbjct: 330 MIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAE 389

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
             K+GF +D  L  ++ +MY KCG   E   +F +M  +NV +W   +S +   GD S  
Sbjct: 390 LSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLS-- 447

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             + +VF +M  RNV +W  MI GY QNGD+ +   L   M+ +   +P++V+++++L  
Sbjct: 448 -SAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEG-FQPDRVTVITILEA 505

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C +L GL  GK +H  A++  L  D  +  +LI MYSKCG +  AR VF+  S N+D + 
Sbjct: 506 CGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMS-NRDTVA 564

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+++++GYG HG G EAV L+ +M+     P+ IT+  V+SAC R+GL+ EG EI+  + 
Sbjct: 565 WNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQ 624

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             +++ P  +   C+VD+LGRAG+L  A +FI++MP EP  S+W AL+ A   H N ++ 
Sbjct: 625 EDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLA 684

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
           + A   +++LEP   S Y++LSN+YA + RWD   ++R +M DRGLKK  G S I I G+
Sbjct: 685 ERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGR 744

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            H F   D AHP   +I+  L+ L   M+ A  +P +
Sbjct: 745 IHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDM 781



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 133/529 (25%), Positives = 241/529 (45%), Gaps = 72/529 (13%)

Query: 4   SSARNTFALVTSRNY--TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
           + A +TF  +T  N      T    L+    +  L+  ++ H+ + ++G  ++  V+T L
Sbjct: 139 AKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATAL 198

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           IT Y+ CG+ + +  VF+ +  ++V  + ++I    ++   NEA EL+  M  + +SP+ 
Sbjct: 199 ITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNA 258

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T  ++       + LN G  IH    + G   D+I+AN+L++MY KC    E   +FD 
Sbjct: 259 VTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDR 318

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           M +R+V SW+  I+G+A S                             GY     +DE  
Sbjct: 319 MSKRDVISWSAMIAGYAQS-----------------------------GYKDKESIDEVF 349

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            L LE   ++ + PNKV+ +S+L  C++   L  G+QIH    +     D SL  A+ +M
Sbjct: 350 QL-LERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNM 408

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSS-------------------------------I 330
           Y+KCGS+  A +VF   + NK+ + W+S                               +
Sbjct: 409 YAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLM 467

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++GY  +G   +   L + M   G +PD +T++ +L ACG    +  G  ++   +    
Sbjct: 468 IAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVK-LG 526

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLA 449
           ++  T +   ++ M  + GQ+  A      M    + + W A+++    HG+  E  DL 
Sbjct: 527 LESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVA-WNAMLAGYGQHGDGLEAVDL- 584

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM--MKDRGLKKSP 496
           +K +++ E  +P N ++L+ + ++  R   V E R +  M     K +P
Sbjct: 585 FKRMLK-ERVSP-NEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTP 631



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 179/376 (47%), Gaps = 45/376 (11%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L+ + N     ++H     A  R  +  K  H Q+  LG   + ++   LI  Y+     
Sbjct: 52  LLVNSNTYGCVIEH----CAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDV 107

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             ++ VF  +  +DV  ++S+I  Y  N+   +A + F  M  +N+ P+  T  +I K  
Sbjct: 108 ASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKAC 167

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
                L  G  IH +   +G   DV +A +L++MY KCG+ S    +F +M +RNV S  
Sbjct: 168 NNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVS-- 225

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                                           WTA+I    Q+  L+EA  L+ +M L+ 
Sbjct: 226 --------------------------------WTAIIQANAQHRKLNEAFELYEQM-LQA 252

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            I PN V+ VS+L +C++   L+ G++IH     + L  D+ + NALI MY KC S+  A
Sbjct: 253 GISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEA 312

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHG-KGHEAV----LLYNKMVCLGSKPDIITIVGVL 366
           R +F+  S  +D I+WS++++GY   G K  E++     L  +M   G  P+ +T + +L
Sbjct: 313 REIFDRMS-KRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSIL 371

Query: 367 SACGRSGLINEGLEIY 382
            AC   G + +G +I+
Sbjct: 372 RACTAHGALEQGRQIH 387



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 161/375 (42%), Gaps = 42/375 (11%)

Query: 104 EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163
           EA++L   +    +  +  T   + +   + +    G ++H    ++G  +D+ L NSL+
Sbjct: 39  EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLI 98

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
           + Y K    +    +F  M  R+V                                    
Sbjct: 99  NFYSKFEDVASAEQVFRRMTLRDV----------------------------------VT 124

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           W++MI  Y  N    +A   F  M   + IEPN+++ +S+L  C++   L  G++IH   
Sbjct: 125 WSSMIAAYAGNNHPAKAFDTFERMTDAN-IEPNRITFLSILKACNNYSILEKGRKIHTIV 183

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
               +  DV++  ALI MYSKCG +  A  VF   +  ++ ++W++I+     H K +EA
Sbjct: 184 KAMGMETDVAVATALITMYSKCGEISVACEVFHKMT-ERNVVSWTAIIQANAQHRKLNEA 242

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
             LY +M+  G  P+ +T V +L++C     +N G  I+ S I+   ++    +   ++ 
Sbjct: 243 FELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIH-SHISERGLETDMIVANALIT 301

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG--NSEMQDLAYKSLIQLEPEN- 460
           M  +   +  A +    M      S W A+++     G  + E  D  ++ L ++  E  
Sbjct: 302 MYCKCNSVQEAREIFDRMSKRDVIS-WSAMIAGYAQSGYKDKESIDEVFQLLERMRREGV 360

Query: 461 -PSNYVSLSNLYASS 474
            P+    +S L A +
Sbjct: 361 FPNKVTFMSILRACT 375


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 202/582 (34%), Positives = 319/582 (54%), Gaps = 45/582 (7%)

Query: 3   LSSARNT--FALVTSR-----NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SN 54
            S+A+ T  F+L T +      +T+ T     ++   +   K  K+ HS+IL   ++  N
Sbjct: 11  FSTAKQTKPFSLTTQKPQLSPKFTALTEDLCNKILDVNPDAKTLKKLHSKILIDQNLHPN 70

Query: 55  PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY 114
           P +  KL+ AYA CG+P  ++ +F+ I  K+V  +N +I  YV N  + +AL +F  M  
Sbjct: 71  PSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMAN 130

Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
               PD++T   + K      +L VG+ IHG  +K+G  +++ + N L+SMY KC     
Sbjct: 131 QGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDA 190

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR----------------------- 211
              + DEMP R++ SWN  ++G+A +G F+  ++  R                       
Sbjct: 191 ARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTN 250

Query: 212 -----------VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                      +F ++K +++ +W  MI  YV N   +EA+ L+L+MQ+   +EP+ VS+
Sbjct: 251 TSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHG-VEPDAVSI 309

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            SVLP C  L     G++IH +  RK+L  ++ L NALIDMY+KCG L  AR VF+   F
Sbjct: 310 SSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMF 369

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            +D ++W+S++S YG+ G+G +AV L+ KM   G  PD I  V VL+AC  +GL++EG  
Sbjct: 370 -RDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRY 428

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            +N ++  Y I P  E   C+VD+LGRAG++D A    + MP+EP+  +WG+L+SA  ++
Sbjct: 429 CFN-LMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVY 487

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
            +  +  LA   L QL PE    YV LSN+YA + RW  V  +R++M  +G+KK PG S 
Sbjct: 488 SSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSN 547

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           + I+   + F   D++H  S  IY+ L  L+  M+     P 
Sbjct: 548 VEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPE 589


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 188/544 (34%), Positives = 304/544 (55%), Gaps = 38/544 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNP--FVSTKLITAYALCGQPTQSQLV 77
           S T+   LQ  A  R+L+  K+ H   L L  +  P  F+S  LI  YA CG+  +++ V
Sbjct: 59  SRTLASLLQHCADSRALREGKRVHLH-LKLTGLKRPGTFLSNHLINMYAKCGKEVEARKV 117

Query: 78  FNSIQHKDVYLYNSLINGYVK---------------------------NHGH----NEAL 106
           F+ +  +++Y +N++++GY K                            H      +EAL
Sbjct: 118 FDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEAL 177

Query: 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
             +S      +  + F+ A +  +  ++K++ +   +HG  +  GF+ +V+L++S++  Y
Sbjct: 178 RFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAY 237

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
           VKCG   +   LFDEM  R+V +W   +SG+A  GD      +  +F +M  +N  +WTA
Sbjct: 238 VKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMK---SANELFVEMPEKNPVSWTA 294

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           +I+GY +NG   +AL LF +M L   + P++ +  S L  C+S+  L  GKQIH + +R 
Sbjct: 295 LISGYARNGMGHKALELFTKMML-FHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRI 353

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
               +  + +ALIDMYSKCGSL   R+VF+      D + W++I+S    HG G EA+ +
Sbjct: 354 NFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQM 413

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
            + MV  G+KPD IT V +L+AC  SGL+ +GL  + S+   Y I P+ E  AC++D+LG
Sbjct: 414 LDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLG 473

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466
           RAG  +  +D ++ MP +P   +W AL+    +HG+ E+   A + LI+LEP++ + YV 
Sbjct: 474 RAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVL 533

Query: 467 LSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEM 526
           LS++YA   RW++V ++R +M +R +KK    SW+ I  K H FSV+D +HP    IY +
Sbjct: 534 LSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSVSDSSHPLKEQIYSV 593

Query: 527 LDDL 530
           L+ L
Sbjct: 594 LEQL 597



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 182/379 (48%), Gaps = 38/379 (10%)

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV--VD 155
           K +  NEA+    N+    +  D  TLA++ +   + + L  G  +H L +K+  +    
Sbjct: 36  KKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVH-LHLKLTGLKRPG 94

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             L+N L++MY KCGK  E   +FD+M  RN+ SWN  +SG+A  G   ++  +R++FD+
Sbjct: 95  TFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLG---MIKPARKLFDK 151

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  ++V +W  M+  + Q G  DEAL  + E + +  I+ N  S   VL  C  L  +  
Sbjct: 152 MPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFR-QLGIQCNGFSFAGVLTVCVKLKEVGL 210

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF--------------- 320
            +Q+HG  +      +V L ++++D Y KCG +  AR++F++ S                
Sbjct: 211 TRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAK 270

Query: 321 ---------------NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
                           K+ ++W++++SGY  +G GH+A+ L+ KM+    +PD  T    
Sbjct: 271 WGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSC 330

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L AC     +  G +I+  ++     +P T + + ++DM  + G L         M  + 
Sbjct: 331 LCACASIASLKHGKQIHAYLLRI-NFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKL 389

Query: 426 SPSIWGALVSASVMHGNSE 444
              +W  ++SA   HG  E
Sbjct: 390 DVVLWNTIISALAQHGCGE 408


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/518 (34%), Positives = 309/518 (59%), Gaps = 11/518 (2%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQPTQ 73
           S  YTS+     L   A   SL+  KQ H Q++ +L HI +P+V++ ++  YA CG   +
Sbjct: 291 STTYTSS-----LTACARLSSLEWGKQLHVQVIRNLPHI-DPYVASAMVELYAKCGCFKE 344

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           ++ VF+S++ ++   +  LI G+++    +E++ELF+ M    ++ D F LAT+      
Sbjct: 345 AKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCN 404

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
             D+ +G  +H L +K G    V+++NSL+SMY KCG       +F+ M +R++ SW   
Sbjct: 405 TMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGM 464

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           I+ ++  G+   + ++R  FD M  RNV  W AM+  Y+Q+G  ++ L ++ +M  +  +
Sbjct: 465 ITAYSQVGN---IAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDV 521

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
            P+ V+ V++   C+ +     G QI G  ++  L  D S+ NA+I MYSKCG +  AR+
Sbjct: 522 IPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARK 581

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
            F+  S  KD ++W+++++GY  HG G +A+ +++ ++  G+KPD I+ V VLS C  SG
Sbjct: 582 AFDFLS-RKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSG 640

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
           L+ EG   ++ +   + I P  E  +C+VD+LGRAG L  A + I  MP++P+  +WGAL
Sbjct: 641 LVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGAL 700

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           +SA   HGN+++ +LA K L  L+      Y+ L+ +YA + + D  A++R +M+D+G+K
Sbjct: 701 LSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIK 760

Query: 494 KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           KSPG SW+ ++ + H F   D +HP  ++I E LD+L+
Sbjct: 761 KSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELM 798



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 198/420 (47%), Gaps = 10/420 (2%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK--LITAYALCGQPTQSQLVFNSIQH 83
           FLQ +  H  L     S ++ L    I+ P V T   ++  YA  G  + +  +F  +  
Sbjct: 61  FLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPT 120

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGML 142
           +DV  +N++++GY ++     AL++F +M  +  S P+ FT   + K  G +    V + 
Sbjct: 121 RDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQ 180

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           + GL  K     D  +  +L+ M V+CG        F  +    +   N  + G+A S  
Sbjct: 181 LLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHG 240

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V  +  +F  M  R+V +W  +I+   ++G + EAL + ++M  K  + P+  +  S
Sbjct: 241 ---VDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKG-VRPDSTTYTS 296

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L  C+ L  L  GKQ+H   IR   + D  + +A++++Y+KCG    A+RVF  S  ++
Sbjct: 297 SLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFS-SLRDR 355

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           ++++W+ ++ G+  +G   E+V L+N+M       D   +  ++S C  +  I  G +++
Sbjct: 356 NSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLH 415

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           +  + +   +    +   ++ M  + G L  A + I     E     W  +++A    GN
Sbjct: 416 SLCLKSGHTRAVV-VSNSLISMYAKCGNLQNA-ELIFNFMAERDIVSWTGMITAYSQVGN 473



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 182/429 (42%), Gaps = 57/429 (13%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           +P V T L+     CG    +   F+ I++  +   NS++ GY K+HG + ALE+F +M 
Sbjct: 193 DPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMP 252

Query: 114 YSNVSPDDFTLATISKLSGEIKD-LNVGMLIHGLSIKIGFV------------------- 153
             +V   +  ++ +SK SG +++ L++ + +HG  ++                       
Sbjct: 253 ERDVVSWNMVISALSK-SGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGK 311

Query: 154 ------------VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
                       +D  +A++++ +Y KCG F E   +F  +  RN  SW V I G    G
Sbjct: 312 QLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYG 371

Query: 202 DFSLVVRSRRVFDQMKRR----NVYAWTAMINGYVQNGD--LDEALVLFLEMQLKDRIEP 255
            FS    S  +F+QM+      + +A   +I+G     D  L   L          R   
Sbjct: 372 CFS---ESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVV 428

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
              SL+S+   C +   L   + I  F   +    D+     +I  YS+ G++  AR  F
Sbjct: 429 VSNSLISMYAKCGN---LQNAELIFNFMAER----DIVSWTGMITAYSQVGNIAKAREFF 481

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-PDIITIVGVLSACGRSGL 374
           +D S  ++ ITW++++  Y  HG   + + +Y+ M+      PD +T V +   C   G 
Sbjct: 482 DDMS-TRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGA 540

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVV--DMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
              G +I    +    I  T+ + A +      GR  +  +A DF+    +      W A
Sbjct: 541 NKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVS----WNA 596

Query: 433 LVSASVMHG 441
           +++    HG
Sbjct: 597 MITGYSQHG 605



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 146/331 (44%), Gaps = 38/331 (11%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF-DEMPQRNVGSWNVRISGHASSG 201
           +H   I +G    V L N+L+  Y+ CG  S+  NL  DE+ + NV + N+ ++G+A  G
Sbjct: 47  LHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLG 106

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
             S  V    +F +M  R+V +W  +++GY Q+G    AL +F+ M+      PN  +  
Sbjct: 107 SLSDAVE---LFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFG 163

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE----- 316
            V+ +C +L       Q+ G   + +   D  +  AL+DM  +CG++D A + F      
Sbjct: 164 CVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNP 223

Query: 317 -------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
                                     S   +D ++W+ ++S     G+  EA+ +   M 
Sbjct: 224 TIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMH 283

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRIKPTTEICACVVDMLGRAGQ 410
             G +PD  T    L+AC R   +  G +++  VI N   I P   + + +V++  + G 
Sbjct: 284 GKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPY--VASAMVELYAKCGC 341

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
              A     ++    S S W  L+   + +G
Sbjct: 342 FKEAKRVFSSLRDRNSVS-WTVLIGGFLQYG 371



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 14/237 (5%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +L   L +C +   L+G + +H   I   L   V L N L+  Y  CG+L  AR +  D 
Sbjct: 27  ALADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDE 86

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
               + IT + +++GY   G   +AV L+ +M       D+ +   ++S   +SG     
Sbjct: 87  ITEPNVITHNIMMNGYAKLGSLSDAVELFGRM----PTRDVASWNTIMSGYYQSGQFLNA 142

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP---VEPSPSIWGALVS 435
           L+I+ S+  T    P      CV+   G  G  + AL  +  +     +  P +  ALV 
Sbjct: 143 LDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVD 202

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL--YASSRRWDAVAELRTMMKDR 490
             V  G     D A K   ++  +NP+     S L  YA S   D   E+   M +R
Sbjct: 203 MLVRCG---AMDFASKQFSRI--KNPTIICRNSMLVGYAKSHGVDHALEIFKSMPER 254


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 192/558 (34%), Positives = 303/558 (54%), Gaps = 74/558 (13%)

Query: 30  SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
           S+TH++    +Q H+++L LG   + F+ TKLI A +  G  T ++ VF+ +    V+ +
Sbjct: 30  SSTHKAQ--LRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPW 87

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N++I GY +N+   +AL ++S M  + VSPD FT   + K  G +  L +G  +H    +
Sbjct: 88  NAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFR 147

Query: 150 IGFVVDVILANSLMSMYVKC---------------------------------GKFSECL 176
           +GF  DV + N L+++Y KC                                 G+  E L
Sbjct: 148 LGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEAL 207

Query: 177 NLFDEMPQRNVGSWNVRI-----------------SGHASSGDFSL-------------- 205
            +F +M + +V    V +                 S HAS     L              
Sbjct: 208 EIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMY 267

Query: 206 -----VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                V  ++ +FD+MK  N+  W AMI+GY +NG   +A+ LF EM  KD + P+ +S+
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKD-VRPDTISI 326

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            S +  C+ +  L   + +  +  R +   DV + +ALIDM++KCGS++CAR VF D + 
Sbjct: 327 TSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVF-DRTL 385

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           ++D + WS+++ GYGLHG+  EA+ LY  M   G  P+ +T +G+L AC  SG++ EG  
Sbjct: 386 DRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWW 445

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            +N + + ++I P  +  AC++D+LGRAG LD+A + IK MPV+P  ++WGAL+SA   H
Sbjct: 446 FFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
            + E+   A + L  ++P N  +YV LSNLYA++R WD VAE+R  MK++GL K  GCSW
Sbjct: 505 RHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564

Query: 501 ISIHGKTHCFSVADKAHP 518
           + + G+   F V DK+HP
Sbjct: 565 VEVRGRLEGFRVGDKSHP 582


>gi|326524514|dbj|BAK00640.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 517

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 196/435 (45%), Positives = 269/435 (61%), Gaps = 35/435 (8%)

Query: 83  HKDVYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           H D  L NS++  Y+++  H    L LF  M     S  + TL + +    +++ L   M
Sbjct: 100 HADPVLTNSILLLYLRSPNHPITPLRLFDEMPSRTASTYN-TLISYAPAGTDLRSLARRM 158

Query: 142 LIHGLSIKIGFVVDVILA--------NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           +  GL   + F V  +L+          L    +KCG    C    D             
Sbjct: 159 VADGLCPDM-FTVSALLSACASERDGRELHCFAIKCGM---CGGDGDF------------ 202

Query: 194 ISGHASSGDFSLVVR------SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
              H SSG  S+  R      + RVF  M++RNV +WTAM+ GY +NG  ++A   F  M
Sbjct: 203 ---HVSSGFVSMYCRVSRPGLAHRVFYGMRQRNVVSWTAMVGGYAENGMFEDAAKAFRAM 259

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
              D I PN+V+L+SVL     L+GL+ GKQ+HGFA+R  L  +VSL NALIDMY+K G+
Sbjct: 260 WAVDGILPNRVALISVLSAVEGLMGLAEGKQVHGFAVRMGLYGEVSLNNALIDMYAKAGA 319

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           L  ARRVF+D+++ KD I+W S+V GYGLHG G EAV L++ M   G KPD I  +GVLS
Sbjct: 320 LRYARRVFDDATWQKDVISWGSMVLGYGLHGMGTEAVTLFDHMHASGVKPDSIVGLGVLS 379

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           AC R+GL+ +GLEIYNS++  +R+ PT E+ ACVVD+LGR+G +D ALDFI++M VEP P
Sbjct: 380 ACCRAGLVLKGLEIYNSLVKDHRVHPTEEMSACVVDLLGRSGLIDHALDFIESMSVEPGP 439

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
            +WGAL+ ASV+H N E QDLA +SL++LE E+PSN VS+SNL+ASS RW+ V ++R  +
Sbjct: 440 GVWGALLDASVIHSNKETQDLACRSLLRLEEESPSNLVSVSNLHASSGRWNIVEQVRAKI 499

Query: 488 KDRGLKKSPGCSWIS 502
           K   LKK+PG SW++
Sbjct: 500 KHGTLKKTPGRSWVN 514


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 182/511 (35%), Positives = 287/511 (56%), Gaps = 6/511 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SLK  K  H+ +L LG   + ++  K++      G    S  +F+  +  +++L+N++I+
Sbjct: 22  SLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIH 81

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G V N    E++E++ +M    +SPD FT   + K    + D  +G+ +HGL +K G   
Sbjct: 82  GLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCES 141

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD----FSLVVRSR 210
           D  +  SL+S+Y KCG       +FD++P++NV +W   ISG+   G       +  R+ 
Sbjct: 142 DAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRAC 201

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
            VFD M  +++ +W++MI GY  NG   EAL LF +M L +   P+  ++V VL  C+ L
Sbjct: 202 SVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKM-LNEGFRPDCYAMVGVLCACARL 260

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G        R E   +  L  ALIDMY+KCG +D A  VF      KD + W++ 
Sbjct: 261 GALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMR-KKDIVVWNAA 319

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           +SG  + G    A  L+ +M   G +PD  T VG+L AC  +GL++EG + +NS+   + 
Sbjct: 320 ISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFT 379

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           + P  E   C+VD+LGRAG LD A   +K+MP+E +  +WGAL+    +H ++++ +   
Sbjct: 380 LTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVL 439

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           K LI LEP N  NYV LSN+Y++S +W+  A++R++M +RG+KK PG SWI + G  H F
Sbjct: 440 KQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEF 499

Query: 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            V D +HP S  IY  L +L+  ++ +   P
Sbjct: 500 LVGDTSHPLSEKIYAKLGELVKDLKASGYVP 530



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 136/361 (37%), Gaps = 82/361 (22%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L+  A     KL  + H  ++  G  S+ FV+T L++ Y  CG    +  VF+
Sbjct: 108 SFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFD 167

Query: 80  SIQ--------------------------------------HKDVYLYNSLINGYVKNHG 101
            I                                        KD+  ++S+I GY  N  
Sbjct: 168 DIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGL 227

Query: 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
             EAL+LF  M      PD + +  +      +  L +G     L  +  F+ + +L  +
Sbjct: 228 PKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTA 287

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+ MY KCG+      +F  M ++++  WN  ISG A S                     
Sbjct: 288 LIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMS--------------------- 326

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
                        G +  A  LF +M+ K  IEP+  + V +L  C+    +  G+Q   
Sbjct: 327 -------------GHVKAAFGLFGQME-KSGIEPDGNTFVGLLCACTHAGLVDEGRQYFN 372

Query: 282 -----FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
                F +  E+ H       ++D+  + G LD A ++ +      +AI W +++ G  L
Sbjct: 373 SMERVFTLTPEIEH----YGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRL 428

Query: 337 H 337
           H
Sbjct: 429 H 429


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 190/541 (35%), Positives = 296/541 (54%), Gaps = 40/541 (7%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           HF+ +     +L    Q H+QI      SN  V T+LI++         +  +F    H 
Sbjct: 42  HFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHP 101

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           +++++N+LI G  +N     ++  F  M   ++ PD  TL  + K    + D+ +G  +H
Sbjct: 102 NLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLH 161

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE----------------------- 181
           G  +K+G   D  +  SL+ MYVK G+    L LFDE                       
Sbjct: 162 GGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKV 221

Query: 182 ------------MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
                       MP+RN GSWN  I+G   +GD     R+R +F QM  +NV +WT MIN
Sbjct: 222 GDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLD---RARELFVQMPEKNVVSWTTMIN 278

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           G+ QNGD ++AL +F  M L++ + PN +++VS L  C+ +  L  G++IH +       
Sbjct: 279 GFSQNGDHEKALSMFWRM-LEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQ 337

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            +  +  AL+DMY+KCG++  A RVF ++   KD +TWS ++ G+ +HG   +A+  + K
Sbjct: 338 LNRGIGTALVDMYAKCGNIKSASRVFVETK-GKDLLTWSVMIWGWAIHGCFDQALQCFVK 396

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M   G  PD +  + +L+AC  SG +++GL  + S+   Y I+PT +    +VD+LGRAG
Sbjct: 397 MKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAG 456

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
           +LD AL FI++MP+ P   IWGAL  A   H N EM +L  + L+QLEP++P +YV LSN
Sbjct: 457 RLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSN 516

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
           +YA+  RW+ V  +RT+MK+RG++K PG S+I + G+ H F   D AH  +  I   L++
Sbjct: 517 VYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEE 576

Query: 530 L 530
           +
Sbjct: 577 I 577


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/491 (37%), Positives = 296/491 (60%), Gaps = 11/491 (2%)

Query: 54  NPFVSTKLITAYAL--CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           +PF ++K++   AL   G    ++LVFN I +   +  NS+I GY   +   +A+  +  
Sbjct: 9   DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 68

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    + PD FT  ++ K  G + +   G  +H  S K+GF  D  + N+LM+MY  CG 
Sbjct: 69  MMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGC 125

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK-RRNVYAWTAMING 230
                 +FD+M  ++V SW   I  +A    + L   + ++F +M+   N++ W  MING
Sbjct: 126 LVSARKVFDKMVNKSVVSWATMIGAYAQ---WDLPHEAIKLFRRMEIASNLFCWNIMING 182

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           +V++ D +EAL LF EMQL   ++ +KV++ S+L  C+ L  L  GK +H +  ++++  
Sbjct: 183 HVEDSDYEEALSLFNEMQLSG-VKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEV 241

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           DV+L  AL+DMY+KCGS++ A RVF++    KD +TW++++ G  + G+G +A+ L+++M
Sbjct: 242 DVALGTALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIVGLAMCGQGLKALELFHEM 300

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
                KPD IT VGVL+AC  +GL+NEG+  +NS+ N Y I+P+ E   C+VDMLGRAG+
Sbjct: 301 QMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGR 360

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           +  A D I+ MP+ P   +   L+SA  +HGN  + + A + LI+L+P+N   YV LSN+
Sbjct: 361 IAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNI 420

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           Y+S + W+A  ++R +M +R +KK PGCS I + G  H F   D +HP S  IYE LDD+
Sbjct: 421 YSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDM 480

Query: 531 ILIMRGAAASP 541
           +  ++ A   P
Sbjct: 481 MRRLKSAGYVP 491



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 132/336 (39%), Gaps = 76/336 (22%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H     LG  S+ ++   L+  Y+ CG    ++ VF+ + +K V  + ++I  Y + 
Sbjct: 95  KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 154

Query: 100 HGHNEALE--------------------------------LFSNMYYSNVSPDDFTLATI 127
              +EA++                                LF+ M  S V  D  T+A++
Sbjct: 155 DLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASL 214

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
                 +  L +G  +H    K    VDV L  +L+ MY KCG     + +F EMP+++V
Sbjct: 215 LIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDV 274

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
            +W                                  TA+I G    G   +AL LF EM
Sbjct: 275 MTW----------------------------------TALIVGLAMCGQGLKALELFHEM 300

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGG-----KQIHGFAIRKELNHDVSLCNALIDMY 302
           Q+ + ++P+ ++ V VL  CS    ++ G        + + I+  + H       ++DM 
Sbjct: 301 QMSE-VKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEH----YGCMVDML 355

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
            + G +  A  + ++     D      ++S   +HG
Sbjct: 356 GRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHG 391


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 197/548 (35%), Positives = 303/548 (55%), Gaps = 36/548 (6%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           QV  T+  ++  +  HS+I+      N  +  KL+ AYA       ++ VF+ I  ++V 
Sbjct: 47  QVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 106

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
           + N +I  YV N  + E +++F  M   NV PD +T   + K       + +G  IHG +
Sbjct: 107 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 166

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF---- 203
            K+G    + + N L+SMY KCG  SE   + DEM +R+V SWN  + G+A +  F    
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226

Query: 204 -------------------SL-----------VVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
                              SL           V+  + +F +M ++++ +W  MI  Y++
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           N    EA+ L+  M+  D  EP+ VS+ SVLP C     LS GK+IHG+  RK+L  ++ 
Sbjct: 287 NAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 345

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L NALIDMY+KCG L+ AR VFE+   ++D ++W++++S YG  G+G +AV L++K+   
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMK-SRDVVSWTAMISAYGFSGRGCDAVALFSKLQDS 404

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G  PD I  V  L+AC  +GL+ EG   +  + + Y+I P  E  AC+VD+LGRAG++  
Sbjct: 405 GLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKE 464

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A  FI+ M +EP+  +WGAL+ A  +H ++++  LA   L QL PE    YV LSN+YA 
Sbjct: 465 AYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAK 524

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
           + RW+ V  +R +MK +GLKK+PG S + ++   H F V D++HP S  IY  LD L+  
Sbjct: 525 AGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKK 584

Query: 534 MRGAAASP 541
           M+     P
Sbjct: 585 MKELGYVP 592



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 157/371 (42%), Gaps = 48/371 (12%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  +   ++ + ++ H     +G  S  FV   L++ Y  CG  ++++LV + +  +DV
Sbjct: 147 LKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDV 206

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NSL+ GY +N   ++ALE+   M    +S D  T+A++          NV M +  +
Sbjct: 207 VSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV-MYVKDM 265

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG-HASSGDFS- 204
             K+G    ++  N ++ +Y+K     E + L+  M         V I+    + GD S 
Sbjct: 266 FFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSA 324

Query: 205 ----------------------------------LVVRSRRVFDQMKRRNVYAWTAMING 230
                                              + ++R VF+ MK R+V +WTAMI+ 
Sbjct: 325 LSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISA 384

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIR 285
           Y  +G   +A+ LF ++Q    + P+ ++ V+ L  CS    L  G+         + I 
Sbjct: 385 YGFSGRGCDAVALFSKLQ-DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 443

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             L H       ++D+  + G +  A R  +D S   +   W +++    +H      +L
Sbjct: 444 PRLEH----LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499

Query: 346 LYNKMVCLGSK 356
             +K+  L  +
Sbjct: 500 AADKLFQLAPE 510


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 192/533 (36%), Positives = 295/533 (55%), Gaps = 37/533 (6%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           VT     + T+   ++  A    L L +  H     +  +S+ FV   LI  Y  CG   
Sbjct: 201 VTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE 260

Query: 73  QS-QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
           ++ + VF+ +  K V  +N+L+ GY +N    +AL+L+  M  S + PD FT+ ++    
Sbjct: 261 EAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLAC 320

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
             +K L+ G  IHG +++ G  VD  +  SL+S+Y+ CGK                    
Sbjct: 321 SRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGK-------------------- 360

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                      F+  V    +FD M+ R++ +W  MI GY QNG  DEA+ LF +M L D
Sbjct: 361 ----------PFAAQV----LFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQM-LSD 405

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            I+P +++++ V   CS L  L  GK++H FA++  L  D+ + +++IDMY+K G +  +
Sbjct: 406 GIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLS 465

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
           +R+F D    KD  +W+ I++GYG+HG+G EA+ L+ KM+ LG KPD  T  G+L AC  
Sbjct: 466 QRIF-DRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSH 524

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           +GL+ +GLE +N ++N + I+P  E   CVVDMLGRAG++D AL  I+ MP +P   IW 
Sbjct: 525 AGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWS 584

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
           +L+S+  +HGN  + +     L++LEPE P NYV +SNL+A S +WD V  +R  MKD G
Sbjct: 585 SLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIG 644

Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
           L+K  GCSWI + GK H F + D+  P    + E    L + +     +P  G
Sbjct: 645 LQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTG 697



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 228/443 (51%), Gaps = 49/443 (11%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFV-STKLITAYALCGQPTQSQLVFNSIQHK 84
            LQ     + +++ ++ H  + +     N FV +T++IT Y++CG P+ S++VF+ ++ K
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           +++ +N++++ Y +N    +A+ +FS +   +   PD+FTL  + K    + DL +G +I
Sbjct: 171 NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 230

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN-LFDEMPQRNVGSWNVRISGHASSGD 202
           HG++ K+  V DV + N+L++MY KCG   E +  +FD M  + V SWN           
Sbjct: 231 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWN----------- 279

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                                  A++ GY QN D  +AL L+L+M     ++P+  ++ S
Sbjct: 280 -----------------------ALLCGYAQNSDPRKALDLYLQMT-DSGLDPDWFTIGS 315

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           +L  CS +  L  G++IHGFA+R  L  D  +  +L+ +Y  CG    A+ +F D   ++
Sbjct: 316 LLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLF-DGMEHR 374

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
             ++W+ +++GY  +G   EA+ L+ +M+  G +P  I I+ V  AC +   +  G E++
Sbjct: 375 SLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELH 434

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQL---DRALDFIKTMPVEPSPSIWGALVSASVM 439
              +  + +     + + ++DM  + G +    R  D ++    E   + W  +++   +
Sbjct: 435 CFALKAH-LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLR----EKDVASWNVIIAGYGI 489

Query: 440 HGN-SEMQDLAYKSL-IQLEPEN 460
           HG   E  +L  K L + L+P++
Sbjct: 490 HGRGKEALELFEKMLRLGLKPDD 512



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 104/213 (48%), Gaps = 10/213 (4%)

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRI---EPNKVSLVSVLPTCSSLIGLSGGKQIHGF-A 283
           I    ++G+L EAL  FL+ +  D +        ++  +L  C     +  G+++H   +
Sbjct: 74  IKKLCESGNLKEALD-FLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVS 132

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
              +  +D  L   +I MYS CGS   +R VF D    K+   W++IVS Y  +    +A
Sbjct: 133 ASTQFCNDFVLNTRIITMYSMCGSPSDSRMVF-DKLRRKNLFQWNAIVSAYTRNELFEDA 191

Query: 344 VLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGL-EIYNSVINTYRIKPTTEICACV 401
           + ++++++ +   KPD  T+  V+ AC  +GL++ GL +I + +     +     +   +
Sbjct: 192 MSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMATKMDLVSDVFVGNAL 249

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           + M G+ G ++ A+  +  +    + S W AL+
Sbjct: 250 IAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL 282


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 176/485 (36%), Positives = 288/485 (59%), Gaps = 12/485 (2%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           + N      +I  YA  G   Q+  +F  +  ++V  +N++I  +++    +EA ELF+ 
Sbjct: 157 VKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNR 216

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M   +V      +A +SK +G I D    +L   + ++     +V+  N+++  Y +  +
Sbjct: 217 MPERDVISWTTMVAGLSK-NGRIDDAR--LLFDKMPVR-----NVVSWNTMIIGYAQNMR 268

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             E   LF++MP+R + SWN  I+G   +G      R+   F +M  +NV  WTA+I+G+
Sbjct: 269 LDEAFKLFEQMPERELSSWNTMITGFIQNGKLE---RAVDFFYKMSNKNVVTWTAVISGH 325

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
           VQ+G  +EAL +F EMQ  + ++PN+ + VSVL  CS L  L  G+QIH    +      
Sbjct: 326 VQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEV 385

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
             + +ALI+MYSKCG L+ AR++F+D S  ++D ++W+ +++ Y  HG GH+A+ L+++M
Sbjct: 386 ADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEM 445

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
             LG +PD +T + +LSAC  +GL++EGL+++ +++    IK   +   C+VD+ GRAG+
Sbjct: 446 QALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGR 505

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           L  A DFIK + V+PS S+W AL++   +HG+ ++  L  + L++ EPEN   Y+ LSN+
Sbjct: 506 LQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENAGTYLVLSNI 565

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YAS+ +W   A +R  MKD+GLKK PGCSWI +    H F V D +H    +IY +L DL
Sbjct: 566 YASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSHREFENIYLLLHDL 625

Query: 531 ILIMR 535
              M+
Sbjct: 626 HTKMK 630



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 112/457 (24%), Positives = 221/457 (48%), Gaps = 49/457 (10%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS-N 111
           SN   S  LIT     G+  +++ VF  +  +DV  + ++I GY+K     EA  LF  N
Sbjct: 64  SNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRN 123

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVG---MLIHGLSIKIGFVVDVILANSLMSMYVK 168
               NV      +   + +SG ++   +     L   + +K     +VI  N+++  Y +
Sbjct: 124 DAIKNV------VTWTALVSGYVRWNRIEEARRLFDAMPVK-----NVISWNTMIEGYAR 172

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
            G   + L+LF++MP+RNV SWN  I+          V  ++ +F++M  R+V +WT M+
Sbjct: 173 KGWIDQALDLFEKMPERNVVSWNTVITAFMQR---RRVDEAQELFNRMPERDVISWTTMV 229

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-HGFAIRKE 287
            G  +NG +D+A +LF +M +++ +  N +           +IG +   ++   F + ++
Sbjct: 230 AGLSKNGRIDDARLLFDKMPVRNVVSWNTM-----------IIGYAQNMRLDEAFKLFEQ 278

Query: 288 L-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
           +   ++S  N +I  + + G L+ A   F   S NK+ +TW++++SG+   G+  EA+ +
Sbjct: 279 MPERELSSWNTMITGFIQNGKLERAVDFFYKMS-NKNVVTWTAVISGHVQDGRSEEALKI 337

Query: 347 YNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           +++M    + KP+  T V VL AC +   + EG +I+  +I+    +   ++ + +++M 
Sbjct: 338 FSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIH-QIISKTVYQEVADVVSALINMY 396

Query: 406 GRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGN--------SEMQDLAYKSLIQL 456
            + G+L+ A        +     + W  +++A   HG+         EMQ L ++     
Sbjct: 397 SKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFR----- 451

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
            P+N +    LS    +    + +     +++DR +K
Sbjct: 452 -PDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIK 487


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 186/511 (36%), Positives = 295/511 (57%), Gaps = 11/511 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ--LVFNSIQHKDVYLYNSLINGYV 97
           KQ H+ I+  G     +V TKLI        P  S   LVF  + + + +L+ ++I GY 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG-FVVDV 156
                +E+   ++ M    V P  FT + + K  G   ++++G  +H  +I IG F  D+
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            + NS++ +YVKCG       +FDEM +R+V SW   I  +A  GD      +  +FD +
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDME---SASGLFDDL 235

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
             +++ AWTAM+ GY QNG   EAL  F +MQ    +E ++V+L  V+  C+ L  +   
Sbjct: 236 PSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQ-DVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 277 KQIHGFAIRKEL--NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
             I   A R     + +V + +ALIDMYSKCGS D A +VFE     ++  ++SS++ GY
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMK-ERNVFSYSSMILGY 353

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            +HG+ H A+ L++ M+    +P+ +T +G+LSAC  +GL+ +G +++  +   + + P+
Sbjct: 354 AMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPS 413

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            +  AC+VD+LGRAG L+ ALD +KTMP+EP+  +WGAL+ A  +HGN ++  +A   L 
Sbjct: 414 PDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF 473

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS-IHGKTHCFSVA 513
           +LEP    NY+ LSN+YAS+ RW+ V++LR +++++G KK+PGCSW    +G+ H F   
Sbjct: 474 KLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAG 533

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
           D  HP S  I + L  LI  +R     P+LG
Sbjct: 534 DTTHPRSSEIRQALKQLIERLRSHGYKPNLG 564


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 179/506 (35%), Positives = 292/506 (57%), Gaps = 9/506 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K+ H   +  G +S+ F+   LI AY  C     ++ VF+ +  KDV  + S+ + YV  
Sbjct: 152 KEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNC 211

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
                 L +F  M ++ V P+  TL++I     E+KDL  G  IHG +++ G + +V + 
Sbjct: 212 GLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVC 271

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           ++L+S+Y +C    +   +FD MP R+V SWN  ++ + ++ ++    +   +F QM  +
Sbjct: 272 SALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYD---KGLALFSQMSSK 328

Query: 220 NVYA----WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
            V A    W A+I G ++NG  ++A+ +  +MQ     +PN++++ S LP CS L  L  
Sbjct: 329 GVEADEATWNAVIGGCMENGQTEKAVEMLRKMQ-NLGFKPNQITISSFLPACSILESLRM 387

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK++H +  R  L  D++   AL+ MY+KCG L+ +R VF D    KD + W++++    
Sbjct: 388 GKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVF-DMICRKDVVAWNTMIIANA 446

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           +HG G E +LL+  M+  G KP+ +T  GVLS C  S L+ EGL+I+NS+   + ++P  
Sbjct: 447 MHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDA 506

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
              AC+VD+  RAG+L  A +FI+ MP+EP+ S WGAL+ A  ++ N E+  ++   L +
Sbjct: 507 NHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFE 566

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           +EP NP NYVSL N+  +++ W   +E R +MK+RG+ K+PGCSW+ +  + H F V DK
Sbjct: 567 IEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDK 626

Query: 516 AHPCSVSIYEMLDDLILIMRGAAASP 541
            +  S  IY  LD+L   M+ A   P
Sbjct: 627 NNMESDKIYNFLDELGEKMKSAGYKP 652



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 210/468 (44%), Gaps = 75/468 (16%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           ++ H  Q S+  + L  TK + S   ++       +  +L+ A    G   ++Q +F++I
Sbjct: 37  SITHSTQSSSIWKQLTSTKVAPSVPTNIP----SHLGLRLLKAALNVGDFRRAQQLFDNI 92

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
              D    ++LI+ +      NEA+ L++++    + P +    T++K  G   D +   
Sbjct: 93  PQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVK 152

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H  +I+ G + D  L N+L+  Y KC        +FD+                    
Sbjct: 153 EVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDD-------------------- 192

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
              LVV           ++V +WT+M + YV  G     L +F EM   + ++PN V+L 
Sbjct: 193 ---LVV-----------KDVVSWTSMSSCYVNCGLPRLGLAVFCEMGW-NGVKPNSVTLS 237

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE----- 316
           S+LP CS L  L  G+ IHGFA+R  +  +V +C+AL+ +Y++C S+  AR VF+     
Sbjct: 238 SILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHR 297

Query: 317 --------------DSSFNK---------------DAITWSSIVSGYGLHGKGHEAVLLY 347
                         +  ++K               D  TW++++ G   +G+  +AV + 
Sbjct: 298 DVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEML 357

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            KM  LG KP+ ITI   L AC     +  G E++  V   + I   T + A +V M  +
Sbjct: 358 RKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTA-LVYMYAK 416

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            G L+ + + +  M        W  ++ A+ MHGN     L ++S++Q
Sbjct: 417 CGDLNLSRN-VFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQ 463



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 143/367 (38%), Gaps = 71/367 (19%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   +  + LK  +  H   +  G I N FV + L++ YA C    Q++LVF+
Sbjct: 233 SVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFD 292

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS--------------------- 118
            + H+DV  +N ++  Y  N  +++ L LFS M    V                      
Sbjct: 293 LMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEK 352

Query: 119 --------------PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
                         P+  T+++       ++ L +G  +H    +   + D+    +L+ 
Sbjct: 353 AVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVY 412

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MY KCG  +   N+FD + +++V +WN  I  +A  G                       
Sbjct: 413 MYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHG----------------------- 449

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
               NG        E L+LF E  L+  I+PN V+   VL  CS    +  G QI     
Sbjct: 450 ----NGR-------EVLLLF-ESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMG 497

Query: 285 RKEL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           R  L   D +    ++D++S+ G L  A    +       A  W +++    ++     A
Sbjct: 498 RDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELA 557

Query: 344 VLLYNKM 350
            +  NK+
Sbjct: 558 KISANKL 564


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 176/485 (36%), Positives = 288/485 (59%), Gaps = 12/485 (2%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           + N      +I  YA  G   Q+  +F  +  ++V  +N++I  +++    +EA ELF+ 
Sbjct: 157 VKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNR 216

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M   +V      +A +SK +G I D    +L   + ++     +V+  N+++  Y +  +
Sbjct: 217 MPERDVISWTTMVAGLSK-NGRIDDAR--LLFDKMPVR-----NVVSWNTMIIGYAQNMR 268

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             E   LF++MP+R + SWN  I+G   +G      R+   F +M  +NV  WTA+I+G+
Sbjct: 269 LDEAFKLFEQMPERELSSWNTMITGFIQNGKLE---RAVDFFYKMSNKNVVTWTAVISGH 325

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
           VQ+G  +EAL +F EMQ  + ++PN+ + VSVL  CS L  L  G+QIH    +      
Sbjct: 326 VQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEV 385

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
             + +ALI+MYSKCG L+ AR++F+D S  ++D ++W+ +++ Y  HG GH+A+ L+++M
Sbjct: 386 ADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEM 445

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
             LG +PD +T + +LSAC  +GL++EGL+++ +++    IK   +   C+VD+ GRAG+
Sbjct: 446 QALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGR 505

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           L  A DFIK + V+PS S+W AL++   +HG+ ++  L  + L++ EPEN   Y+ LSN+
Sbjct: 506 LQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENAGTYLVLSNI 565

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YAS+ +W   A +R  MKD+GLKK PGCSWI +    H F V D +H    +IY +L DL
Sbjct: 566 YASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSHREFENIYLLLHDL 625

Query: 531 ILIMR 535
              M+
Sbjct: 626 HTKMK 630



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/457 (24%), Positives = 220/457 (48%), Gaps = 49/457 (10%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS-N 111
           SN   S  LIT     G+  +++ VF  +  +DV  + ++I GY+K     EA  LF  N
Sbjct: 64  SNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRN 123

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVG---MLIHGLSIKIGFVVDVILANSLMSMYVK 168
               NV      +   + +SG ++   +     L   + +K     +VI  N+++  Y +
Sbjct: 124 DAIKNV------VTWTALVSGYVRWNRIEEARRLFDAMPVK-----NVISWNTMIEGYAR 172

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
            G   + L+LF+ MP+RNV SWN  I+          V  ++ +F++M  R+V +WT M+
Sbjct: 173 KGWIDQALDLFEXMPERNVVSWNTVITAFMQR---RRVDEAQELFNRMPERDVISWTTMV 229

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-HGFAIRKE 287
            G  +NG +D+A +LF +M +++ +  N +           +IG +   ++   F + ++
Sbjct: 230 AGLSKNGRIDDARLLFDKMPVRNVVSWNTM-----------IIGYAQNMRLDEAFKLFEQ 278

Query: 288 L-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
           +   ++S  N +I  + + G L+ A   F   S NK+ +TW++++SG+   G+  EA+ +
Sbjct: 279 MPERELSSWNTMITGFIQNGKLERAVDFFYKMS-NKNVVTWTAVISGHVQDGRSEEALKI 337

Query: 347 YNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           +++M    + KP+  T V VL AC +   + EG +I+  +I+    +   ++ + +++M 
Sbjct: 338 FSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIH-QIISKTVYQEVADVVSALINMY 396

Query: 406 GRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGN--------SEMQDLAYKSLIQL 456
            + G+L+ A        +     + W  +++A   HG+         EMQ L ++     
Sbjct: 397 SKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFR----- 451

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
            P+N +    LS    +    + +     +++DR +K
Sbjct: 452 -PDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIK 487


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 181/528 (34%), Positives = 300/528 (56%), Gaps = 7/528 (1%)

Query: 10  FALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHI--SNPFVSTKLITAYAL 67
           FA  T+RN    T Q F  +     SL+  KQ H + ++LG +      ++ KL+  Y  
Sbjct: 242 FASYTNRNAHMNT-QTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQ 300

Query: 68  CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            G P  +Q VFN IQ+ D+  +  LI+ Y+      +A  +FS++++S + PD F +   
Sbjct: 301 LGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGA 360

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
               G  KDL+ G ++HG+  +     D I+ N+L+ MY + G      ++F  M  ++V
Sbjct: 361 VSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDV 420

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
            SW   ++G     D   +  +RR+FD+M  RN  +WTAMI GYVQ       L LF EM
Sbjct: 421 SSWTSLLNGFIKCND---IEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEM 477

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
           + + +  P  +++V+VL  C+ +     G  +HG+  +  L+ DV++ NAL+DMY+K G+
Sbjct: 478 RAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGA 537

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           L  A ++F++    +D  +W++++SG  LHGKG  A+  ++ M   G  P+ +T++ VLS
Sbjct: 538 LVLALKIFQEMP-KRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLS 596

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           AC  +GL+ EG  ++  ++  + IKP  +   C+VD+LGRAG L  A + I+ MP++P  
Sbjct: 597 ACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDS 656

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
            IW +L+SA ++HGN  + ++A K +I+LEP++   Y+ L N+Y S+ RW+   + R  M
Sbjct: 657 VIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAM 716

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           +DR +KK PGCSW+ ++G  H F   D  H     +Y +L+ +   M+
Sbjct: 717 RDRRVKKKPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVLEAITEQMK 764


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 197/548 (35%), Positives = 303/548 (55%), Gaps = 36/548 (6%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           QV  T+  ++  +  HS+I+      N  +  KL+ AYA       ++ VF+ I  ++V 
Sbjct: 47  QVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 106

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
           + N +I  YV N  + E +++F  M   NV PD +T   + K       + +G  IHG +
Sbjct: 107 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 166

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF---- 203
            K+G    + + N L+SMY KCG  SE   + DEM +R+V SWN  + G+A +  F    
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226

Query: 204 -------------------SL-----------VVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
                              SL           V+  + +F +M ++++ +W  MI  Y++
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           N    EA+ L+  M+  D  EP+ VS+ SVLP C     LS GK+IHG+  RK+L  ++ 
Sbjct: 287 NAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 345

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L NALIDMY+KCG L+ AR VFE+   ++D ++W++++S YG  G+G +AV L++K+   
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMK-SRDVVSWTAMISAYGFSGRGCDAVALFSKLQDS 404

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G  PD I  V  L+AC  +GL+ EG   +  + + Y+I P  E  AC+VD+LGRAG++  
Sbjct: 405 GLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKE 464

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A  FI+ M +EP+  +WGAL+ A  +H ++++  LA   L QL PE    YV LSN+YA 
Sbjct: 465 AYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAK 524

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
           + RW+ V  +R +MK +GLKK+PG S + ++   H F V D++HP S  IY  LD L+  
Sbjct: 525 AGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKK 584

Query: 534 MRGAAASP 541
           M+     P
Sbjct: 585 MKELGYVP 592


>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Vitis vinifera]
          Length = 515

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 178/498 (35%), Positives = 292/498 (58%), Gaps = 10/498 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K+ H+ ++      + F+ TK++      G+   + L+F  +   + +LYN++I  Y  N
Sbjct: 5   KKIHAHVVKFSLSXSSFLVTKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRAYKHN 64

Query: 100 HGHNEALELFSNMY-----YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
             +  A+ +   M       +   PD FT   + K    +   N+G  +HG + K G   
Sbjct: 65  KVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKS 124

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           + ++ NSL+ MYVKC    +   +F+EM +R+  SWN  ISGH   G      R+R +F+
Sbjct: 125 NTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMR---RARAIFE 181

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +++ + +++WTA+++GY + G    AL  F  MQ+ D IE +++SLVSVLP C+ L  L 
Sbjct: 182 ELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVD-IELDEISLVSVLPACAQLGALE 240

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK IH +A +     D+ +CNALI++Y+K GS+D  RR+F   +  +D I+WS+++ G 
Sbjct: 241 LGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMN-ERDVISWSTMIVGL 299

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG+  EA+ L+ +M     +P+IIT VG+LSAC  +GL+NEGL  + S+     I+P 
Sbjct: 300 ANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPG 359

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+V++LG +G+LD+AL+ IK MP++P   IWG L S+   HGN E+  +A + L+
Sbjct: 360 VEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIVAIAMEHLL 419

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEP++  NY++LSNLYA   +WD V+ +R +M  + + K+PGCS I +      ++  D
Sbjct: 420 ELEPDDTGNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGCSSIEVDNMVQEYASGD 479

Query: 515 KAHPCSVSIYEMLDDLIL 532
            + P S +IY +L  L++
Sbjct: 480 DSKPFSKAIYRVLKLLVM 497



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 48/276 (17%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI---- 93
           L KQ H      G  SN  +   L+  Y  C     +  VF  +  +D   +N+LI    
Sbjct: 109 LGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHV 168

Query: 94  ---------------------------NGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
                                      +GY +   H  ALE F  M   ++  D+ +L +
Sbjct: 169 RLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVS 228

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +     ++  L +G  IH  + K GF+ D+ + N+L+ +Y K G   E   LF +M +R+
Sbjct: 229 VLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERD 288

Query: 187 VGSWNVRISGHASSGDFSLVVRSR---RVFDQMKRR----NVYAWTAMINGYVQNGDLDE 239
           V SW+  I G A+ G      R+R    +F +M++     N+  +  +++     G L+E
Sbjct: 289 VISWSTMIVGLANHG------RAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNE 342

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
            L  F  M+  D IEP     V       +L+GLSG
Sbjct: 343 GLGYFESMERDDNIEPG----VEHYGCLVNLLGLSG 374



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 4/207 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+L K  H      G + +  V   LI  YA  G   + + +F+ +  +DV  ++++I 
Sbjct: 238 ALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIV 297

Query: 95  GYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGF 152
           G + NHG   EA+ELF  M  + V P+  T   +         LN G+     +      
Sbjct: 298 G-LANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNI 356

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVRSRR 211
              V     L+++    G+  + L L  +MP + +   W +  S   S G+  +V  +  
Sbjct: 357 EPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIVAIAME 416

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLD 238
              +++  +   +  + N Y   G  D
Sbjct: 417 HLLELEPDDTGNYITLSNLYADLGKWD 443


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 186/511 (36%), Positives = 295/511 (57%), Gaps = 11/511 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ--LVFNSIQHKDVYLYNSLINGYV 97
           KQ H+ I+  G     +V TKLI        P  S   LVF  + + + +L+ ++I GY 
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG-FVVDV 156
                +E+   ++ M    V P  FT + + K  G   ++++G  +H  +I IG F  D+
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDL 178

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            + NS++ +YVKCG       +FDEM +R+V SW   I  +A  GD      +  +FD +
Sbjct: 179 YVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDME---SASGLFDDL 235

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
             +++ AWTAM+ GY QNG   EAL  F +MQ    +E ++V+L  V+  C+ L  +   
Sbjct: 236 PLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQ-DVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 277 KQIHGFAIRKEL--NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
             I   A R     + +V + +ALIDMYSKCGS D A +VFE     ++  ++SS++ GY
Sbjct: 295 NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMK-ERNVFSYSSMILGY 353

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            +HG+ H A+ L++ M+    +P+ +T +G+LSAC  +GL+ +G +++  +   + + P+
Sbjct: 354 AMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPS 413

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            +  AC+VD+LGRAG L+ ALD +KTMP+EP+  +WGAL+ A  +HGN ++  +A   L 
Sbjct: 414 PDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF 473

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS-IHGKTHCFSVA 513
           +LEP    NY+ LSN+YAS+ RW+ V++LR +++++G KK+PGCSW    +G+ H F   
Sbjct: 474 KLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAG 533

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
           D  HP S  I + L  LI  +R     P+LG
Sbjct: 534 DTTHPRSSEIRQALKQLIERLRSHGYKPNLG 564


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 186/517 (35%), Positives = 289/517 (55%), Gaps = 10/517 (1%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           T  +L   ++ HS I   G  ++  V+  LIT Y  C     ++  F+ +  +DV  +++
Sbjct: 292 TPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSA 351

Query: 92  LINGYVKN-----HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
           +I GY ++        +E  +L   M    V P+  T  +I K       L  G  IH  
Sbjct: 352 MIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAE 411

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
             K+GF  D  L  ++ +MY KCG   E   +F +M  +NV +W   ++ +   GD +  
Sbjct: 412 ISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLT-- 469

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             + +VF +M  RNV +W  MI GY Q+GD+ +   L   M+++   +P++V+++S+L  
Sbjct: 470 -SAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEG-FQPDRVTIISILEA 527

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C +L  L  GK +H  A++  L  D  +  +LI MYSKCG +  AR VF+  S N+D + 
Sbjct: 528 CGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKIS-NRDTVA 586

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+++++GYG HG G EAV L+ +M+     P+ IT   V+SACGR+GL+ EG EI+  + 
Sbjct: 587 WNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQ 646

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             +R+KP  +   C+VD+LGRAG+L  A +FI+ MP EP  S+W AL+ A   H N ++ 
Sbjct: 647 EDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLA 706

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
           + A   +++LEP N S YV+LSN+YA + RWD   ++R +M D+GLKK  G S I I G+
Sbjct: 707 EWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGR 766

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            H F   D AHP   SI+  L+ L   M+ A  +P +
Sbjct: 767 IHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDM 803



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/532 (24%), Positives = 233/532 (43%), Gaps = 76/532 (14%)

Query: 4   SSARNTFALVTSRNY--TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
           + A +TF  +   N      T    L+    +  L+  ++ H+ + + G  ++  V+T L
Sbjct: 161 AKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATAL 220

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           IT Y+ CG+ + +  +F  ++ ++V  + ++I    ++   NEA EL+  M  + +SP+ 
Sbjct: 221 ITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNA 280

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T  ++       + LN G  IH    + G   DV++AN+L++MY KC    +    FD 
Sbjct: 281 VTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDR 340

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           M +R+V SW+  I+G+A S                             GY     LDE  
Sbjct: 341 MSKRDVISWSAMIAGYAQS-----------------------------GYQDKESLDEVF 371

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            L LE   ++ + PNKV+ +S+L  CS    L  G+QIH    +     D SL  A+ +M
Sbjct: 372 QL-LERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNM 430

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSI------------------------------- 330
           Y+KCGS+  A +VF     NK+ + W+S+                               
Sbjct: 431 YAKCGSIYEAEQVFSKME-NKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLM 489

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++GY   G   +   L + M   G +PD +TI+ +L ACG    +  G  ++   +    
Sbjct: 490 IAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVK-LG 548

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG-NSEMQDLA 449
           ++  T +   ++ M  + G++  A      +    + + W A+++    HG   E  DL 
Sbjct: 549 LESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVA-WNAMLAGYGQHGIGPEAVDL- 606

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE----LRTMMKDRGLKKSPG 497
           +K +  L+   P N ++ + + ++  R   V E     R M +D  +K  PG
Sbjct: 607 FKRM--LKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMK--PG 654



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 214/490 (43%), Gaps = 54/490 (11%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
            L+ + N     ++H     A  R  +  K  H Q+  LG   + ++   LI  Y+  G 
Sbjct: 73  GLLVNSNTYGCIIEH----CAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGD 128

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
               + VF  +  +DV  ++S+I  Y  N+   +A + F  M  +N+ P+  T  +I K 
Sbjct: 129 VASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKA 188

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
                 L     IH +    G   DV +A +L++MY KCG+ S    +F +M +RNV S 
Sbjct: 189 CNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVS- 247

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
                                            WTA+I    Q+  L+EA  L+ +M L+
Sbjct: 248 ---------------------------------WTAIIQANAQHRKLNEAFELYEKM-LQ 273

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             I PN V+ VS+L +C++   L+ G++IH     + L  DV + NALI MY KC  +  
Sbjct: 274 AGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQD 333

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKG-----HEAVLLYNKMVCLGSKPDIITIVGV 365
           AR  F+  S  +D I+WS++++GY   G        E   L  +M   G  P+ +T + +
Sbjct: 334 ARETFDRMS-KRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSI 392

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L AC   G + +G +I+ + I+    +    +   + +M  + G +  A      M    
Sbjct: 393 LKACSVHGALEQGRQIH-AEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NK 450

Query: 426 SPSIWGALVSASVMHGNSEMQDL--AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483
           +   W +L++  +  G     DL  A K   ++   N  ++  +   YA S     V EL
Sbjct: 451 NVVAWASLLTMYIKCG-----DLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFEL 505

Query: 484 RTMMKDRGLK 493
            + MK  G +
Sbjct: 506 LSSMKVEGFQ 515



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 165/376 (43%), Gaps = 42/376 (11%)

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EA++L   +    +  +  T   I +   +++    G ++H    ++G  +D+ L NSL
Sbjct: 60  KEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSL 119

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           ++ Y K                                  F  V    +VF +M  R+V 
Sbjct: 120 INFYSK----------------------------------FGDVASVEQVFRRMTLRDVV 145

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W++MI  Y  N    +A   F  M+  + IEPN+++ +S+L  C++   L   ++IH  
Sbjct: 146 TWSSMIAAYAGNNHPAKAFDTFERMKDAN-IEPNRITFLSILKACNNYSMLEKAREIHTV 204

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
                +  DV++  ALI MYSKCG +  A  +F+     ++ ++W++I+     H K +E
Sbjct: 205 VKASGMETDVAVATALITMYSKCGEISLACEIFQKMK-ERNVVSWTAIIQANAQHRKLNE 263

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A  LY KM+  G  P+ +T V +L++C     +N G  I+ S I+   ++    +   ++
Sbjct: 264 AFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIH-SHISERGLETDVVVANALI 322

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG--NSEMQDLAYKSLIQLEPEN 460
            M  +   +  A +    M      S W A+++     G  + E  D  ++ L ++  E 
Sbjct: 323 TMYCKCNCIQDARETFDRMSKRDVIS-WSAMIAGYAQSGYQDKESLDEVFQLLERMRREG 381

Query: 461 --PSNYVSLSNLYASS 474
             P+    +S L A S
Sbjct: 382 VFPNKVTFMSILKACS 397


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 183/519 (35%), Positives = 297/519 (57%), Gaps = 9/519 (1%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           +  A+ R +   K+ H   +  G  S+  +   LI  Y  C     ++LVF  +  +DV 
Sbjct: 86  KACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVI 145

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            + S+ + YV      EAL  F  M  +   P+  T+++I     ++KDL  G  +HG  
Sbjct: 146 SWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFV 205

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           ++ G   +V ++++L++MY  C    +   +FD M +R+  SWNV I+ +  + +     
Sbjct: 206 VRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECE--- 262

Query: 208 RSRRVFDQMKRRNV---YA-WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
           +   VF +M    V   YA W A+I G +QNG  ++AL +   MQ     +PN++++ SV
Sbjct: 263 KGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQ-NSGFKPNQITITSV 321

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           LP C++L  L GGKQIHG+  R     D++   AL+ MY+KCG L+ +RRVF   +  +D
Sbjct: 322 LPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMT-KRD 380

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            ++W++++    +HG G EA+LL+ +MV  G +P+ +T  GVLS C  S L++EGL I++
Sbjct: 381 TVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFD 440

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           S+   + ++P  +  +C+VD+L RAG+L+ A +FIK MP+EP+   WGAL+    ++ N 
Sbjct: 441 SMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNV 500

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           E+  +A   L ++E +NP NYV LSN+  S++ W   +E R +M+DRG+ K+PGCSWI +
Sbjct: 501 ELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQV 560

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
             + H F V DK++  S  IY  LD +   MR A   P+
Sbjct: 561 RNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPN 599



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 201/437 (45%), Gaps = 76/437 (17%)

Query: 55  PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY 114
           P ++ K I  Y+  G   +++ +F+ I   D+  +  LI+   K+    EA++ +++  +
Sbjct: 11  PHLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRH 70

Query: 115 SN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
            N V PD   L +++K    ++D+     +H  +I+ GF  DV+L N+L+ MY KC + S
Sbjct: 71  KNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKC-RCS 129

Query: 174 ECLNL-FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
           E   L F+ MP R                                  +V +WT+M + YV
Sbjct: 130 EGARLVFEGMPFR----------------------------------DVISWTSMASCYV 155

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
             G L EAL  F +M L     PN V++ S+LP C+ L  L  G+++HGF +R  +  +V
Sbjct: 156 NCGLLREALGAFRKMGLNGE-RPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNV 214

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL---------------- 336
            + +AL++MY+ C S+  A+ VF DS   +D ++W+ +++ Y L                
Sbjct: 215 FVSSALVNMYASCLSIRQAQLVF-DSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMS 273

Query: 337 -------------------HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
                              +G+  +A+ + ++M   G KP+ ITI  VL AC     +  
Sbjct: 274 EGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRG 333

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G +I+  +   +  +  T   A V  M  + G L+ +      M    + S W  ++ A+
Sbjct: 334 GKQIHGYIFRHWFFQDLTTTTALVF-MYAKCGDLELSRRVFSMMTKRDTVS-WNTMIIAT 391

Query: 438 VMHGNSEMQDLAYKSLI 454
            MHGN E   L ++ ++
Sbjct: 392 SMHGNGEEALLLFREMV 408



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 117/274 (42%), Gaps = 38/274 (13%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S TV   L      + LK  ++ H  ++  G   N FVS+ L+  YA C    Q+QLVF+
Sbjct: 179 SVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFD 238

Query: 80  SIQHKDVYLYNSLINGYVKN----------------------------------HGHNE- 104
           S+  +D   +N LI  Y  N                                  +G  E 
Sbjct: 239 SMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEK 298

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           ALE+ S M  S   P+  T+ ++      ++ L  G  IHG   +  F  D+    +L+ 
Sbjct: 299 ALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVF 358

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRI--SGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           MY KCG       +F  M +R+  SWN  I  +    +G+ +L++  R + D   R N  
Sbjct: 359 MYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLL-FREMVDSGVRPNSV 417

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
            +T +++G   +  +DE L++F  M     +EP+
Sbjct: 418 TFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPD 451



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 2/177 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L       SL+  KQ H  I       +   +T L+  YA CG    S+ VF+ +
Sbjct: 317 TITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMM 376

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D   +N++I     +    EAL LF  M  S V P+  T   +       + ++ G+
Sbjct: 377 TKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGL 436

Query: 142 LIH-GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISG 196
           LI   +S       D    + ++ +  + G+  E      +MP +   G+W   + G
Sbjct: 437 LIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGG 493


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  347 bits (890), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 178/517 (34%), Positives = 304/517 (58%), Gaps = 9/517 (1%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           S  YTS+     L   A   SL   KQ H+Q++      +P+V++ ++  YA CG   ++
Sbjct: 294 STTYTSS-----LTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEA 348

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI 134
           + VF+S++ ++   +  LI G+++    +E+LELF+ M    ++ D F LATI       
Sbjct: 349 RRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNR 408

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
            D+ +   +H LS+K G    V+++NSL+SMY KCG      ++F  M +R++ SW   +
Sbjct: 409 MDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGML 468

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           + ++  G+   + ++R  FD M  RNV  W AM+  Y+Q+G  ++ L ++  M  +  + 
Sbjct: 469 TAYSQVGN---IGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVI 525

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+ V+ V++   C+ +     G QI G  ++  L  D S+ NA+I MYSKCG +  AR++
Sbjct: 526 PDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKI 585

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F+  S  KD ++W+++++GY  HG G +A+ +++ M+  G+KPD I+ V VLS+C  SGL
Sbjct: 586 FDFLS-RKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGL 644

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           + EG   ++ +   + + P  E  +C+VD+L RAG L  A + I  MP++P+  +WGAL+
Sbjct: 645 VQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALL 704

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
           SA   HGN+E+ +LA K L  L+  +   Y+ L+ +YA + +    A++R +M+D+G+KK
Sbjct: 705 SACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKK 764

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           +PG SW+ +  K H F   D +HP  ++I E LD+L+
Sbjct: 765 NPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELM 801



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 199/420 (47%), Gaps = 10/420 (2%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK--LITAYALCGQPTQSQLVFNSIQH 83
           FLQ +  H  L       ++ L  G I+ P V T   ++  YA  G  + ++ +F  +  
Sbjct: 64  FLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPR 123

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGML 142
           +DV  +N+L++GY ++    +A+E F +M  S  S P+ FT     K  G +    V + 
Sbjct: 124 RDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQ 183

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           + GL  K GF  D  +A  ++ M+V+CG        F ++ +  V   N  ++G+A S  
Sbjct: 184 LLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYG 243

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V  +  +F+ M  R+V +W  M++   Q+G   EAL + ++M  +  +  +  +  S
Sbjct: 244 ---VDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRG-VRLDSTTYTS 299

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L  C+ L  L  GKQ+H   IR     D  + +A++++Y+KCG    ARRVF  S  ++
Sbjct: 300 SLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFS-SLRDR 358

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           + ++W+ ++ G+  +G   E++ L+N+M       D   +  ++S C     +    +++
Sbjct: 359 NTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLH 418

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           +  + +   +    I   ++ M  + G L  A     +M  E     W  +++A    GN
Sbjct: 419 SLSLKSGHTRAVV-ISNSLISMYAKCGNLQNAESIFSSME-ERDIVSWTGMLTAYSQVGN 476



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/459 (21%), Positives = 185/459 (40%), Gaps = 101/459 (22%)

Query: 46  ILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA 105
           +   G   +P V+T ++  +  CG    +   F+ I+   V+  NS++ GY K++G + A
Sbjct: 188 LTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHA 247

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKD----------------------------- 136
           LELF +M   +V   +  ++ +S+ SG  ++                             
Sbjct: 248 LELFESMPERDVVSWNMMVSALSQ-SGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAK 306

Query: 137 ---LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
              L  G  +H   I+    +D  +A++++ +Y KCG F E   +F  +  RN  SW V 
Sbjct: 307 LSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVL 366

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           I G                                  ++Q G   E+L LF +M+  + +
Sbjct: 367 IGG----------------------------------FLQYGCFSESLELFNQMR-AELM 391

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
             ++ +L +++  CS+ + +   +Q+H  +++      V + N+LI MY+KCG+L  A  
Sbjct: 392 TVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAES 451

Query: 314 VFE------------------------------DSSFNKDAITWSSIVSGYGLHGKGHEA 343
           +F                               D    ++ ITW++++  Y  HG   + 
Sbjct: 452 IFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDG 511

Query: 344 VLLYNKMVCLGSK-PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           + +Y+ M+      PD +T V +   C   G    G +I    +    I  T+ + A V+
Sbjct: 512 LKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNA-VI 570

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
            M  + G++  A      +  +   S W A+++    HG
Sbjct: 571 TMYSKCGRISEARKIFDFLSRKDLVS-WNAMITGYSQHG 608



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 142/330 (43%), Gaps = 38/330 (11%)

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF-DEMPQRNVGSWNVRISGHASSGD 202
           HG  + +G    V L N+L+  Y+ CG   +   L   ++ + NV + N+ ++G+A  G 
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
            S    +  +F +M RR+V +W  +++GY Q+G   +A+  F+ M+      PN  +   
Sbjct: 111 LS---DAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGC 167

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------ 316
            + +C +L       Q+ G   +     D  +   ++DM+ +CG++D A + F       
Sbjct: 168 AMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPT 227

Query: 317 ------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
                                   +S   +D ++W+ +VS     G+  EA+ +   M  
Sbjct: 228 VFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHN 287

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR-IKPTTEICACVVDMLGRAGQL 411
            G + D  T    L+AC +   +  G +++  VI +   I P   + + +V++  + G  
Sbjct: 288 RGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPY--VASAMVELYAKCGCF 345

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             A     ++    + S W  L+   + +G
Sbjct: 346 KEARRVFSSLRDRNTVS-WTVLIGGFLQYG 374



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 14/237 (5%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +L   L +C +   L+G + +HG  +   L   V L N L+  Y  CG+L  AR +    
Sbjct: 30  ALADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGD 89

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
               + IT + +++GY   G   +A  L+ +M     + D+ +   ++S   +SG   + 
Sbjct: 90  ITEPNVITHNIMMNGYAKLGSLSDAEELFGRM----PRRDVTSWNTLMSGYYQSGRFLDA 145

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP---VEPSPSIWGALVS 435
           +E + S+  +    P      C +   G  G  + AL  +  +     +  P +   +V 
Sbjct: 146 MESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVD 205

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL--YASSRRWDAVAELRTMMKDR 490
             V  G     D A K   Q+  E P+ +   S L  YA S   D   EL   M +R
Sbjct: 206 MFVRCGAV---DFASKQFSQI--ERPTVFCRNSMLAGYAKSYGVDHALELFESMPER 257


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/489 (35%), Positives = 290/489 (59%), Gaps = 5/489 (1%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           ++PF+ + LI  YA CG+   ++ +F+ + H+DV  +N +I+GY +N  ++  L+L+  M
Sbjct: 149 ADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEM 208

Query: 113 YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
             S   PD   L T+        +L+ G  IH      GF V   +  SL++MY  CG  
Sbjct: 209 KTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAM 268

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                ++D++P +++      +SG+A  G   +V  +R +FD+M  +++  W+AMI+GY 
Sbjct: 269 HLAREVYDQLPSKHMVVSTAMLSGYAKLG---MVQDARFIFDRMVEKDLVCWSAMISGYA 325

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           ++    EAL LF EMQ + RI P++++++SV+  C+++  L   K IH +A +      +
Sbjct: 326 ESYQPLEALQLFNEMQ-RRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTL 384

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            + NALIDMY+KCG+L  AR VFE+    K+ I+WSS+++ + +HG    A+ L+++M  
Sbjct: 385 PINNALIDMYAKCGNLVKAREVFENMP-RKNVISWSSMINAFAMHGDADSAIALFHRMKE 443

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
              +P+ +T +GVL AC  +GL+ EG + ++S+IN +RI P  E   C+VD+  RA  L 
Sbjct: 444 QNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLR 503

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
           +A++ I+TMP  P+  IWG+L+SA   HG  E+ + A   L++LEP++    V LSN+YA
Sbjct: 504 KAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYA 563

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
             +RWD V  +R +MK +G+ K   CS I ++ + H F +AD+ H  S  IY+ LD ++ 
Sbjct: 564 KEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVS 623

Query: 533 IMRGAAASP 541
            ++    +P
Sbjct: 624 QLKLVGYTP 632



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 215/486 (44%), Gaps = 86/486 (17%)

Query: 31  ATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKD 85
           A+ ++L+  KQ H+QIL     ++  +  KL+        P+ S L     +F+ I +  
Sbjct: 20  ASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPNPP 79

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
               N L+  + +       L L+ ++  +    D F+   + K   ++  LN+G+ IHG
Sbjct: 80  TRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHG 139

Query: 146 LSIKIGFV-VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
           L+ K GF   D  + ++L++MY  CG+  +   LFD+M  R+V +WN+ I          
Sbjct: 140 LASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMI---------- 189

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
                                   +GY QN   D  L L+ EM+     EP+ + L +VL
Sbjct: 190 ------------------------DGYSQNAHYDHVLKLYEEMKTSG-TEPDAIILCTVL 224

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF--------- 315
             C+    LS GK IH F           +  +L++MY+ CG++  AR V+         
Sbjct: 225 SACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMV 284

Query: 316 ---------------EDSSF------NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
                          +D+ F       KD + WS+++SGY    +  EA+ L+N+M    
Sbjct: 285 VSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRR 344

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK----PTTEICACVVDMLGRAGQ 410
             PD IT++ V+SAC      N G  +    I+TY  K     T  I   ++DM  + G 
Sbjct: 345 IVPDQITMLSVISACA-----NVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGN 399

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLS 468
           L +A +  + MP +   S W ++++A  MHG++   D A     +++ +N  P+    + 
Sbjct: 400 LVKAREVFENMPRKNVIS-WSSMINAFAMHGDA---DSAIALFHRMKEQNIEPNGVTFIG 455

Query: 469 NLYASS 474
            LYA S
Sbjct: 456 VLYACS 461



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 138/337 (40%), Gaps = 67/337 (19%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ-----------PTQ---------- 73
           +L   K  H  I   G      + T L+  YA CG            P++          
Sbjct: 232 NLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLS 291

Query: 74  ----------SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
                     ++ +F+ +  KD+  ++++I+GY +++   EAL+LF+ M    + PD  T
Sbjct: 292 GYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQIT 351

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           + ++      +  L     IH  + K GF   + + N+L+ MY KCG   +   +F+ MP
Sbjct: 352 MLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMP 411

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
           ++NV SW+  I+  A                                   +GD D A+ L
Sbjct: 412 RKNVISWSSMINAFA----------------------------------MHGDADSAIAL 437

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMY 302
           F  M+ +  IEPN V+ + VL  CS    +  G++     I +  ++        ++D+Y
Sbjct: 438 FHRMK-EQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLY 496

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
            +   L  A  + E   F  + I W S++S    HG+
Sbjct: 497 CRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGE 533


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/506 (36%), Positives = 292/506 (57%), Gaps = 5/506 (0%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           +++  +    +L LG  S+ FVS  +I     CG    ++ +F+    +D+  +NS+ING
Sbjct: 123 IRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMING 182

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           YV+     EAL  +  M    + PD+ T+  +     +++DL++G   H    + G  + 
Sbjct: 183 YVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLT 242

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V LAN+LM MY+KCG       LFD M  + + SW   + G+A SG   L+  + ++FD+
Sbjct: 243 VPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSG---LLDMAWKLFDE 299

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  ++V  W AMI GYV      EAL LF EMQ  + I P++V++VS L  CS L  L  
Sbjct: 300 MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGALDV 358

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G  IH +  + EL+ +V+L  ALIDMY+KCG +  A +VF++    ++++TW++I+SG  
Sbjct: 359 GIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELP-GRNSLTWTAIISGLA 417

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           LHG  H A+  +++M+     PD +T +G+LSAC   GL+ EG + ++ + + + + P  
Sbjct: 418 LHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKL 477

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           +  +C+VD+LGRAG L+ A + IK+MP+E    +WGAL  A  +HGN  M + A   L+Q
Sbjct: 478 KHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQ 537

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           ++P +   YV L+N+Y  +  W    + R +M+ RG++K+PGCS I ++G  + F V DK
Sbjct: 538 MDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDK 597

Query: 516 AHPCSVSIYEMLDDLILIMRGAAASP 541
           +HP S  IYE L  L   +     +P
Sbjct: 598 SHPQSEQIYECLIQLTRQLELVECTP 623



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 218/459 (47%), Gaps = 80/459 (17%)

Query: 23  VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL------ 76
           +  FL +    +S+   KQ  SQ++  G I + F S++LI   A C       L      
Sbjct: 6   INPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLI---AFCAISEWRDLDYCTNI 62

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLATISKLSGEIK 135
           +FN+ ++ + + +N  I G++ +    EA+ L+  +   +   PD++T   + K    + 
Sbjct: 63  LFNT-RNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLS 121

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
            + +G  I G  + +GF  D+ ++N+++ + V CG       +FD+   R++ SWN  I 
Sbjct: 122 LIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMI- 180

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                                            NGYV+ G   EAL  + EM+++  I+P
Sbjct: 181 ---------------------------------NGYVRRGWAYEALNFYREMKVEG-IKP 206

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           ++V+++ V+ +C+ L  L  G++ H +     L   V L NAL+DMY KCG+L+ AR++F
Sbjct: 207 DEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 266

Query: 316 EDSSFNKDAITWSSIVSGYGLHG-------------------------------KGHEAV 344
            DS  NK  ++W+++V GY   G                               +G EA+
Sbjct: 267 -DSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEAL 325

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+N+M  +   PD +T+V  LSAC + G ++ G+ I++  I  + +     +   ++DM
Sbjct: 326 ALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHH-YIEKHELSLNVALGTALIDM 384

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
             + G++ +A+   + +P   S + W A++S   +HGN+
Sbjct: 385 YAKCGKITKAIQVFQELPGRNSLT-WTAIISGLALHGNA 422



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 155/322 (48%), Gaps = 9/322 (2%)

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNV---GSWNVRISGHASSGDFSLVVRSRRVFD 214
           L N  +S+  KC   S+   +  +M    +   G  + R+    +  ++  +     +  
Sbjct: 5   LINPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILF 64

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
             +  N ++W   I G++ + +  EA+VL+  +   D  +P+  +   +   C+ L  + 
Sbjct: 65  NTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIR 124

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G +I G  +    + D+ + NA+I +   CG LD AR++F D S  +D ++W+S+++GY
Sbjct: 125 MGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF-DKSCVRDLVSWNSMINGY 183

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
              G  +EA+  Y +M   G KPD +T++GV+S+C +   ++ G E +   I    +K T
Sbjct: 184 VRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESH-CYIEENGLKLT 242

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
             +   ++DM  + G L+ A     +M  +   S W  +V   V +  S + D+A+K   
Sbjct: 243 VPLANALMDMYMKCGNLESARKLFDSMTNKTMVS-WTTMV---VGYAQSGLLDMAWKLFD 298

Query: 455 QLEPENPSNYVSLSNLYASSRR 476
           ++  ++   + ++   Y  + R
Sbjct: 299 EMPDKDVVPWNAMIGGYVHANR 320


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 308/561 (54%), Gaps = 50/561 (8%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP-----TQSQL 76
            + H L    T  SL   KQ+H+ IL  GH+ + +++  L+ +YA            S  
Sbjct: 34  AILHLLNTQCT-TSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLR 92

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ ++  +V+L+N +I   ++N+   +A+ L+  M  ++  P+ +T   + K   +   
Sbjct: 93  VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGV 152

Query: 137 LNVGMLIHGLSIKIGF--------------------------------VVDVILANSLMS 164
           +  G+ +H   +K G                                  VD +  N+++ 
Sbjct: 153 VAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMID 212

Query: 165 MYVKCGKFSECLNLFDEMPQRN-VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
            Y++ G+      LF+ MP R+ + +WN  ISG +  G   +V  +R  FD+MK R+  +
Sbjct: 213 GYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCG---MVEVAREFFDEMKERDEIS 269

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           W+AMI+GY+Q G   EAL +F +MQ K++I P K  L SVL  C++L  L  G+ IH +A
Sbjct: 270 WSAMIDGYIQEGCFMEALEIFHQMQ-KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA 328

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
            R  +  D  L  +L+DMY+KCG +D A  VFE  S NK+  +W++++ G  +HG+  +A
Sbjct: 329 KRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDA 387

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + L++KM      P+ IT VGVL+AC   GL+ +GL I+NS+   Y ++P  E   C+VD
Sbjct: 388 IDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVD 444

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           +LGRAG L  A   + ++P EP+P++WGAL+ A   HGN E+ +   K L++LEP+N   
Sbjct: 445 LLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGR 504

Query: 464 YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI-HGKTHCFSVADKAHPCSVS 522
           Y  LSN+YA + RW+ V E+R +MK+RG+K +PG S I +  G+ H F + D +HP    
Sbjct: 505 YTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKD 564

Query: 523 IYEMLDDLI--LIMRGAAASP 541
           IY+MLD +   L M G    P
Sbjct: 565 IYQMLDKVKERLQMEGYEPDP 585


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 194/576 (33%), Positives = 316/576 (54%), Gaps = 40/576 (6%)

Query: 2   ILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTK 60
           I+SS R  F  +    ++    +  L     +  +K   + HS+I+   H+  +P ++ K
Sbjct: 20  IVSSTRIRFDRLKVEVFSKEACEVILD---QYPGIKTLNKLHSKIVINEHLRIDPTLAIK 76

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L+ AY+  G+ + ++ +F+    K+V  +N +I  YV N+ + EAL +F  M     +PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            +T   + K    + +L VG+ +H   +K+G   ++ + N+L++MY KCG   E   + D
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 181 EMPQRNVGSWNVRISGHASSGDF-----------SL-----------------------V 206
           +MP R+V SWN  ++G+A SG F           SL                       V
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                +F++M ++N+ +W  MI  YV N   +EA+ LFL+M+ +  ++P+ V++ S+LP 
Sbjct: 257 QYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQME-ECGMKPDAVTIASLLPA 315

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C  L  L  G+++H +  +  L  ++ L NAL+DMY+KCG L+ AR VF+     +D ++
Sbjct: 316 CGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRL-RDVVS 374

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+S++S YG  G+G++AV L+ KM+  G  PD I  V VLSAC  +GL+++G   +  + 
Sbjct: 375 WTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMT 434

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             Y I P  E  AC+VD+ GRAG+++ A  FIK MP+EP+  +WGAL+SA  +H   ++ 
Sbjct: 435 EQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIG 494

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
            +A   L QL P+    YV LSN+YA +  W  V  +R  MK  G+KK PG S + ++G+
Sbjct: 495 LVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQ 554

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
            H F   D+ HP + +IY  LD L+  M+     P 
Sbjct: 555 VHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQ 590


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/512 (34%), Positives = 298/512 (58%), Gaps = 5/512 (0%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  +Q H  +L  G   N FV T L+  Y LCGQ   ++ VF+     DV  +N +I+
Sbjct: 133 ALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIIS 192

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            Y K     E+  LF  M    V P   TL  +     ++KDL  G  +H          
Sbjct: 193 AYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVES 252

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +++L N+++ MY  CG+    L +F  M  R++ SW   +SG  + G+  +   +R  FD
Sbjct: 253 NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDV---ARNYFD 309

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  ++  +WTAMI+GY+++    EAL LF  MQ  + ++P++ ++VSVL  C+ L  L 
Sbjct: 310 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATN-VKPDEFTMVSVLTACAHLGALE 368

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+ I  +  R ++ +D+ + NALIDMY KCG +D A  +F + S  +D  TW++++ G 
Sbjct: 369 LGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGL 427

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            ++G G +A+ +++ M+     PD IT +GVLSAC  +GL+++G + +  + + + I+P 
Sbjct: 428 AVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPN 487

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
                C+VD+L RAG+L  A + I+ MP++ +  +WGAL++   ++  S+M ++  K ++
Sbjct: 488 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL 547

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEP+N + YV L N+YA+ +RW+ + ELR MM D+G+KK+PGCS I ++G+ H F   D
Sbjct: 548 ELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGD 607

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
           ++HP + +I   LD +   ++ A  SP + ++
Sbjct: 608 RSHPQTKNIDAKLDKMTQDLKLAGYSPDISEV 639



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 199/451 (44%), Gaps = 81/451 (17%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC-----GQPTQSQLVFNSIQHKDV 86
           T  S+   +Q H Q +  G  +NP +  +++T    C     G    ++ +F+ I   ++
Sbjct: 27  TCESMDQLQQVHCQAIKKGLNANPVLQNRVMT---FCCTHEYGDFQYARRLFDEIPEPNL 83

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD--LNVGMLIH 144
           +++N++I GY +       + L+  M    V PD +T   + K  G  +D  L  G  +H
Sbjct: 84  FIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFK--GFTRDIALEYGRQLH 141

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
           G  +K G   +V +  +L+ MY+ CG+      +FD  P+ +V +WN+ IS +   G F 
Sbjct: 142 GHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFE 201

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
               SRR+F  M+ + V                                 P  V+LV VL
Sbjct: 202 ---ESRRLFLVMEDKQVL--------------------------------PTTVTLVLVL 226

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             CS L  L  GK++H +    ++  ++ L NA+IDMY+ CG +D A  +F  S  N+D 
Sbjct: 227 SACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFR-SMNNRDI 285

Query: 325 ITWSSIVSGYGLHG-------------------------------KGHEAVLLYNKMVCL 353
           I+W++IVSG+   G                               +  EA+ L+  M   
Sbjct: 286 ISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT 345

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
             KPD  T+V VL+AC   G +  G E   + I+  +IK    +   ++DM  + G +D+
Sbjct: 346 NVKPDEFTMVSVLTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDK 404

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           A    + M  +     W A++    ++G+ E
Sbjct: 405 AESIFREMS-QRDKFTWTAMIVGLAVNGHGE 434



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 145/293 (49%), Gaps = 10/293 (3%)

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           GDF     +RR+FD++   N++ W  MI GY +       + L+LEM L+  ++P++ + 
Sbjct: 66  GDFQY---ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEM-LRRGVKPDRYTF 121

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
             +    +  I L  G+Q+HG  ++  L ++V +  AL+ MY  CG LD AR VF D   
Sbjct: 122 PFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF-DVCP 180

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
             D ITW+ I+S Y   GK  E+  L+  M      P  +T+V VLSAC +   +  G +
Sbjct: 181 KADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKK 240

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           +++ V N  +++    +   ++DM    G++D AL   ++M      S W  +VS     
Sbjct: 241 VHSYVKNC-KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIIS-WTTIVSGFTNL 298

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           G     D+A     ++  ++  ++ ++ + Y  S R+    EL   M+   +K
Sbjct: 299 GEI---DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 348



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 181/416 (43%), Gaps = 81/416 (19%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHR--SLKLTKQSHSQILSLGHISNPFVSTK 60
              +R  F ++  +     TV   L +SA  +   L+  K+ HS + +    SN  +   
Sbjct: 200 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENA 259

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDV---------------------YL----------Y 89
           +I  YA CG+   +  +F S+ ++D+                     Y           +
Sbjct: 260 MIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSW 319

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
            ++I+GY++++   EALELF NM  +NV PD+FT+ ++      +  L +G  I     +
Sbjct: 320 TAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDR 379

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
                D+ + N+L+ MY KCG   +  ++F EM QR+  +W                   
Sbjct: 380 NKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTW------------------- 420

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
                          TAMI G   NG  ++AL +F  M LK  I P++++ + VL  C+ 
Sbjct: 421 ---------------TAMIVGLAVNGHGEKALDMFSNM-LKASILPDEITYIGVLSACTH 464

Query: 270 LIGLSGGKQIHGFAIRKELNH----DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
              +  G++   + +R    H    +++    L+D+ ++ G L  A  V E+     ++I
Sbjct: 465 TGLVDKGRK---YFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSI 521

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD----IITIVGVLSACGRSGLINE 377
            W ++++G  ++ +   A ++  +++ L  +PD     + +  + +AC R   + E
Sbjct: 522 VWGALLAGCRVYRESDMAEMVVKQILEL--EPDNGAVYVLLCNIYAACKRWNDLRE 575


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 181/518 (34%), Positives = 311/518 (60%), Gaps = 11/518 (2%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQPTQ 73
           S  YTS+     L   A   SL+  KQ H+Q++ +L HI +P+V++ L+  YA  G   +
Sbjct: 270 STTYTSS-----LTACARLSSLRWGKQLHAQVIRNLPHI-DPYVASALVELYAKSGCFKE 323

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           ++ VFNS+  ++   +  LI+G+++     E++ELF+ M    ++ D F LAT+      
Sbjct: 324 AKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCS 383

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
             DL +G  +H L +K G +  V+++NSL+SMY KC        +F  M ++++ SW   
Sbjct: 384 RMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSM 443

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           I+ ++  G+   V ++R  FD M  +NV  W AM+  Y+Q+G  ++ L ++  M  ++ +
Sbjct: 444 ITAYSQVGN---VAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYV 500

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
            P+ V+ V++   C+ L     G QI G  ++  L  D S+ NA+I MYSKCG +  AR+
Sbjct: 501 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARK 560

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VF+  +  KD ++W+++++GY  HG G +A+ +++ ++  G+KPD I+ V VLS C  SG
Sbjct: 561 VFDFLNV-KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 619

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
           L+ EG   ++ +   + I P  E  +C+VD+LGRAG L  A D I  MP++P+  +WGAL
Sbjct: 620 LVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGAL 679

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           +SA  +HGN+E+ +LA K + +L+  +  +Y+ ++ +YA + + D  A++R +M+D+G+K
Sbjct: 680 LSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIK 739

Query: 494 KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           K+PG SW+ +  K H F   D +HP  ++I + LD+L+
Sbjct: 740 KNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELM 777



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 227/478 (47%), Gaps = 43/478 (8%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK--LITAYALCGQPTQSQLVFNSIQH 83
           FLQ +  H  L     S ++ L L  I++P V T   ++  YA  G+ + +  +F  +  
Sbjct: 40  FLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPA 99

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGML 142
           +DV  +N+L++GY ++  +  +LE F +M+ S  S P+ FTLA   K  G +   ++ + 
Sbjct: 100 RDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQ 159

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +  +  K     D  +A +L+ M+V+CG       LF  + +  +   N  ++G+  +  
Sbjct: 160 LLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYG 219

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V  +  +FD M  R+V +W  M++   Q+G + EAL + ++MQ K  +  +  +  S
Sbjct: 220 ---VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG-VRLDSTTYTS 275

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L  C+ L  L  GKQ+H   IR   + D  + +AL+++Y+K G    A+ VF +S  ++
Sbjct: 276 SLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVF-NSLHDR 334

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC--------GR--- 371
           + + W+ ++SG+  +G   E+V L+N+M       D   +  ++S C        GR   
Sbjct: 335 NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 394

Query: 372 -----SGLINEGLEIYNSVINTY-------------RIKPTTEICA--CVVDMLGRAGQL 411
                SG I + + + NS+I+ Y             R     +I +   ++    + G +
Sbjct: 395 SLCLKSGQI-QAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNV 453

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS--NYVSL 467
            +A +F   M  E +   W A++ A + HG  E     YK ++  E   P    YV+L
Sbjct: 454 AKAREFFDGMS-EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTL 510



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 177/418 (42%), Gaps = 84/418 (20%)

Query: 8   NTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
           N F L  +     A   H L +       K   Q  S+           V+  L+  +  
Sbjct: 137 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSE-----------VAAALVDMFVR 185

Query: 68  CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           CG    +  +F  I+   ++  NS++ GYVK +G + ALELF +M   +V   +  ++ +
Sbjct: 186 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 128 SKLSGEIKD--------------------------------LNVGMLIHGLSIKIGFVVD 155
           S+ SG +++                                L  G  +H   I+    +D
Sbjct: 246 SQ-SGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHID 304

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             +A++L+ +Y K G F E   +F+ +  RN  +W V ISG                   
Sbjct: 305 PYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISG------------------- 345

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                          ++Q G   E++ LF +M+  + +  ++ +L +++  C S + L  
Sbjct: 346 ---------------FLQYGCFTESVELFNQMR-AELMTLDQFALATLISGCCSRMDLCL 389

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+Q+H   ++      V + N+LI MY+KC +L  A  +F   +  KD ++W+S+++ Y 
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN-EKDIVSWTSMITAYS 448

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
             G   +A   ++ M    S+ ++IT   +L A  + G   +GL +Y  +++   ++P
Sbjct: 449 QVGNVAKAREFFDGM----SEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 502



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 144/330 (43%), Gaps = 38/330 (11%)

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF-DEMPQRNVGSWNVRISGHASSGD 202
           HG  + +G    V L N+L+  Y+ CG  S+   L   ++   NV + NV ++G+A  G 
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
            S  V    +F +M  R+V +W  +++GY Q+     +L  FL M       PN  +L  
Sbjct: 87  LSDAVE---LFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLAC 143

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------ 316
            + +C +L   S   Q+     + +   D  +  AL+DM+ +CG++D A R+F       
Sbjct: 144 AMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPT 203

Query: 317 ------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
                                   DS   +D ++W+ +VS     G+  EA+ +   M  
Sbjct: 204 MFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQS 263

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRIKPTTEICACVVDMLGRAGQL 411
            G + D  T    L+AC R   +  G +++  VI N   I P   + + +V++  ++G  
Sbjct: 264 KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY--VASALVELYAKSGCF 321

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             A     ++  + +   W  L+S  + +G
Sbjct: 322 KEAKGVFNSLH-DRNNVAWTVLISGFLQYG 350



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 33/188 (17%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +    L +C +   L+G + +HG  +   L   V L N L+  Y  CG+L  ARR+    
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 65

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM----------------------VCL--- 353
             + + IT + +++GY   G+  +AV L+ +M                      V L   
Sbjct: 66  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 125

Query: 354 -------GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
                   S P+  T+   + +CG  G  +  L++  +++  +  +  +E+ A +VDM  
Sbjct: 126 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLL-AMVQKFDSQDDSEVAAALVDMFV 184

Query: 407 RAGQLDRA 414
           R G +D A
Sbjct: 185 RCGAVDLA 192


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/539 (35%), Positives = 297/539 (55%), Gaps = 40/539 (7%)

Query: 8   NTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
           ++F    S +Y  A++   L+   + ++L+  KQ H+++  LG   N  ++TKL+  Y++
Sbjct: 49  DSFPSSPSNHYYYASL---LESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSV 105

Query: 68  CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           C     +  +F+ I   +++L+N LI  Y  N  H  A+ L+  M    + PD+FTL  +
Sbjct: 106 CNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFV 165

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
            K    +  +  G +IH   I+ G+  DV +  +L+ MY KCG                 
Sbjct: 166 LKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCG----------------- 208

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
                             VV +R VFD++  R+   W +M+  Y QNG  DE+L L  EM
Sbjct: 209 -----------------CVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEM 251

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
             K  + P + +LV+V+ + + +  L  G++IHGF  R    ++  +  ALIDMY+KCGS
Sbjct: 252 AAKG-VRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGS 310

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           +  A  +FE     K  ++W++I++GY +HG   EA+ L+ +M+   ++PD IT VG L+
Sbjct: 311 VKVACVLFERLR-EKRVVSWNAIITGYAMHGLAVEALDLFERMM-KEAQPDHITFVGALA 368

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           AC R  L++EG  +YN ++   RI PT E   C+VD+LG  GQLD A D I+ M V P  
Sbjct: 369 ACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDS 428

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
            +WGAL+++   HGN E+ ++A + LI+LEP++  NYV L+N+YA S +W+ VA LR +M
Sbjct: 429 GVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLM 488

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
            D+G+KK+  CSWI +  K + F   D +HP S +IY  L  L  +MR A   P  G +
Sbjct: 489 IDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSV 547


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 198/552 (35%), Positives = 305/552 (55%), Gaps = 38/552 (6%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L+ S+ +TS           T R LK   Q H+  +  G I +P  + ++I   A   + 
Sbjct: 20  LILSKPFTSCK---------TPRDLK---QLHAIFIKTGQIQDPLTAAEVIKFCAFSSRD 67

Query: 72  TQ-SQLVFNSIQHKDVYLYNSLINGYVK---NHGHNEALELFSNMYYS-NVSPDDFTLAT 126
              ++ VF  +   + + +N+++    +    H  +EAL LFS M     V P+ FT  +
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE-----CLNLFD- 180
           + K       L  G  IHGL +K GF  D  + ++L+ MYV C    +     C N+ D 
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 181 ------EMPQR----NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
                 E+ +R    NV  WN+ I G    GD   +  ++ +FD+M +R+V +W  MI+G
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGD---IKSAKNLFDEMPQRSVVSWNVMISG 244

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           Y QNG   EA+ LF EMQ    I+PN V+LVSVLP  + +  L  GK IH +A + ++  
Sbjct: 245 YAQNGHFIEAINLFQEMQ-SSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEI 303

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           D  L +AL+DMYSKCGS+D A +VFE     ++AITWS+I+  + +HG+  +A++ ++ M
Sbjct: 304 DDVLGSALVDMYSKCGSIDEALQVFETLP-KRNAITWSAIIGAFAMHGRAEDAIIHFHLM 362

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G  P+ +  +G+LSAC  +GL+ EG   ++ ++    ++P  E   C+VD+LGRAG 
Sbjct: 363 GKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGH 422

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           L+ A + I+ MP+EP   IW AL+ A  MH N +M +   ++L++L P +  +YV+LSNL
Sbjct: 423 LEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNL 482

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YAS   W+AVA +R  MK   ++K PGCSWI IHG  H F V D +H  +  I  ML ++
Sbjct: 483 YASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEM 542

Query: 531 ILIMRGAAASPH 542
            + +R     P+
Sbjct: 543 SMKLRSNGYRPN 554


>gi|357117008|ref|XP_003560268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 512

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 195/466 (41%), Positives = 281/466 (60%), Gaps = 51/466 (10%)

Query: 43  HSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQL---VFNSIQHKDVYLYNSLINGYVK 98
           H+  L LGH+ ++P ++  ++  Y     P  S L   +F+ +  +    YN+LI+    
Sbjct: 87  HAFSLRLGHLHADPVLTNSILLHY--LQSPHSSSLALRLFDEMSVRTASTYNTLIS---Y 141

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTL-ATISKLSGEIKDLNVGMLIHGLSIKIGFV--VD 155
           +    +       M     +PD FT+ A +S    E +    G  +H  ++K G    +D
Sbjct: 142 SPAGADTWSFLRCMIADGHTPDRFTVSAALSACMSERE----GRELHCFAMKGGMCSDID 197

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             ++++L+SMY +  +                                     +RRVF++
Sbjct: 198 FHVSSALVSMYCRACQPG----------------------------------LARRVFER 223

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M+RRNV +WTAM+ GY +N   ++A+  F +M     I PN+V+L+SVL     L  L+G
Sbjct: 224 MQRRNVVSWTAMVGGYAENRMFEDAIKAFRQMWTIGGILPNRVALISVLSAVEGLTVLAG 283

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G Q+HGFA+R  L  +VSL NALI MY+KCG+L  ARRVF D +++KD I+W S+V GYG
Sbjct: 284 GAQVHGFAVRMGLYGEVSLNNALIAMYAKCGALHYARRVF-DGTWHKDVISWGSMVLGYG 342

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           LHG G EAV L++ M   G KPD I  +GVLSAC R+GL+ EGLEIYNS++  +++ PT 
Sbjct: 343 LHGMGTEAVTLFDHMHATGVKPDSIVGLGVLSACCRTGLVVEGLEIYNSLLKDHKVHPTE 402

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           E+ AC+VD+LGR+G +D ALDFIK+M VEP PS+WGAL+ ASV+H N E+QDLA +SL++
Sbjct: 403 EMSACIVDLLGRSGLIDDALDFIKSMSVEPGPSVWGALLDASVIHSNKEIQDLACRSLLR 462

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           LE  N SN V +SNL+ASS RW+ V +LR  +K   LKK+PGCSW+
Sbjct: 463 LEEGNSSNLVLVSNLHASSGRWNIVEQLRAAIKQGSLKKTPGCSWV 508



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H   + +G      ++  LI  YA CG    ++ VF+   HKDV  + S++ GY  + 
Sbjct: 286 QVHGFAVRMGLYGEVSLNNALIAMYAKCGALHYARRVFDGTWHKDVISWGSMVLGYGLHG 345

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
              EA+ LF +M+ + V PD  ++  +  LS   +    G+++ GL I
Sbjct: 346 MGTEAVTLFDHMHATGVKPD--SIVGLGVLSACCR---TGLVVEGLEI 388


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 181/518 (34%), Positives = 311/518 (60%), Gaps = 11/518 (2%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQPTQ 73
           S  YTS+     L   A   SL+  KQ H+Q++ +L HI +P+V++ L+  YA  G   +
Sbjct: 290 STTYTSS-----LTACARLSSLRWGKQLHAQVIRNLPHI-DPYVASALVELYAKSGCFKE 343

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           ++ VFNS+  ++   +  LI+G+++     E++ELF+ M    ++ D F LAT+      
Sbjct: 344 AKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCS 403

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
             DL +G  +H L +K G +  V+++NSL+SMY KC        +F  M ++++ SW   
Sbjct: 404 RMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSM 463

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           I+ ++  G+   V ++R  FD M  +NV  W AM+  Y+Q+G  ++ L ++  M  ++ +
Sbjct: 464 ITAYSQVGN---VAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYV 520

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
            P+ V+ V++   C+ L     G QI G  ++  L  D S+ NA+I MYSKCG +  AR+
Sbjct: 521 RPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARK 580

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VF+  +  KD ++W+++++GY  HG G +A+ +++ ++  G+KPD I+ V VLS C  SG
Sbjct: 581 VFDFLNV-KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 639

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
           L+ EG   ++ +   + I P  E  +C+VD+LGRAG L  A D I  MP++P+  +WGAL
Sbjct: 640 LVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGAL 699

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           +SA  +HGN+E+ +LA K + +L+  +  +Y+ ++ +YA + + D  A++R +M+D+G+K
Sbjct: 700 LSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIK 759

Query: 494 KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           K+PG SW+ +  K H F   D +HP  ++I + LD+L+
Sbjct: 760 KNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELM 797



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 227/478 (47%), Gaps = 43/478 (8%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK--LITAYALCGQPTQSQLVFNSIQH 83
           FLQ +  H  L     S ++ L L  I++P V T   ++  YA  G+ + +  +F  +  
Sbjct: 60  FLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPA 119

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGML 142
           +DV  +N+L++GY ++  +  +LE F +M+ S  S P+ FTLA   K  G +   ++ + 
Sbjct: 120 RDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQ 179

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +  +  K     D  +A +L+ M+V+CG       LF  + +  +   N  ++G+  +  
Sbjct: 180 LLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYG 239

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V  +  +FD M  R+V +W  M++   Q+G + EAL + ++MQ K  +  +  +  S
Sbjct: 240 ---VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG-VRLDSTTYTS 295

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L  C+ L  L  GKQ+H   IR   + D  + +AL+++Y+K G    A+ VF +S  ++
Sbjct: 296 SLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVF-NSLHDR 354

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC--------GR--- 371
           + + W+ ++SG+  +G   E+V L+N+M       D   +  ++S C        GR   
Sbjct: 355 NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH 414

Query: 372 -----SGLINEGLEIYNSVINTY-------------RIKPTTEICA--CVVDMLGRAGQL 411
                SG I + + + NS+I+ Y             R     +I +   ++    + G +
Sbjct: 415 SLCLKSGQI-QAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNV 473

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS--NYVSL 467
            +A +F   M  E +   W A++ A + HG  E     YK ++  E   P    YV+L
Sbjct: 474 AKAREFFDGMS-EKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTL 530



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 177/418 (42%), Gaps = 84/418 (20%)

Query: 8   NTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
           N F L  +     A   H L +       K   Q  S+           V+  L+  +  
Sbjct: 157 NAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSE-----------VAAALVDMFVR 205

Query: 68  CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           CG    +  +F  I+   ++  NS++ GYVK +G + ALELF +M   +V   +  ++ +
Sbjct: 206 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 265

Query: 128 SKLSGEIKD--------------------------------LNVGMLIHGLSIKIGFVVD 155
           S+ SG +++                                L  G  +H   I+    +D
Sbjct: 266 SQ-SGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHID 324

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             +A++L+ +Y K G F E   +F+ +  RN  +W V ISG                   
Sbjct: 325 PYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISG------------------- 365

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                          ++Q G   E++ LF +M+  + +  ++ +L +++  C S + L  
Sbjct: 366 ---------------FLQYGCFTESVELFNQMR-AELMTLDQFALATLISGCCSRMDLCL 409

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+Q+H   ++      V + N+LI MY+KC +L  A  +F   +  KD ++W+S+++ Y 
Sbjct: 410 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN-EKDIVSWTSMITAYS 468

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
             G   +A   ++ M    S+ ++IT   +L A  + G   +GL +Y  +++   ++P
Sbjct: 469 QVGNVAKAREFFDGM----SEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 522



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 144/330 (43%), Gaps = 38/330 (11%)

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF-DEMPQRNVGSWNVRISGHASSGD 202
           HG  + +G    V L N+L+  Y+ CG  S+   L   ++   NV + NV ++G+A  G 
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
            S  V    +F +M  R+V +W  +++GY Q+     +L  FL M       PN  +L  
Sbjct: 107 LSDAVE---LFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLAC 163

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------ 316
            + +C +L   S   Q+     + +   D  +  AL+DM+ +CG++D A R+F       
Sbjct: 164 AMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPT 223

Query: 317 ------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
                                   DS   +D ++W+ +VS     G+  EA+ +   M  
Sbjct: 224 MFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQS 283

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRIKPTTEICACVVDMLGRAGQL 411
            G + D  T    L+AC R   +  G +++  VI N   I P   + + +V++  ++G  
Sbjct: 284 KGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY--VASALVELYAKSGCF 341

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             A     ++  + +   W  L+S  + +G
Sbjct: 342 KEAKGVFNSLH-DRNNVAWTVLISGFLQYG 370



 Score = 45.4 bits (106), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 33/188 (17%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +    L +C +   L+G + +HG  +   L   V L N L+  Y  CG+L  ARR+    
Sbjct: 26  AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM----------------------VCL--- 353
             + + IT + +++GY   G+  +AV L+ +M                      V L   
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145

Query: 354 -------GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
                   S P+  T+   + +CG  G  +  L++  +++  +  +  +E+ A +VDM  
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLL-AMVQKFDSQDDSEVAAALVDMFV 204

Query: 407 RAGQLDRA 414
           R G +D A
Sbjct: 205 RCGAVDLA 212


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 308/561 (54%), Gaps = 50/561 (8%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP-----TQSQL 76
            + H L    T  SL   KQ+H+ IL  GH+ + +++  L+ +YA            S  
Sbjct: 35  AILHLLNTQCT-TSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLR 93

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ ++  +V+L+N +I   ++N+   +A+ L+  M  ++  P+ +T   + K   +   
Sbjct: 94  VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGV 153

Query: 137 LNVGMLIHGLSIKIGF--------------------------------VVDVILANSLMS 164
           +  G+ +H   +K G                                  VD +  N+++ 
Sbjct: 154 VAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMID 213

Query: 165 MYVKCGKFSECLNLFDEMPQRN-VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
            Y++ G+      LF+ MP R+ + +WN  ISG +  G   +V  +R  FD+MK R+  +
Sbjct: 214 GYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCG---MVEVAREFFDEMKERDEIS 270

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           W+AMI+GY+Q G   EAL +F +MQ K++I P K  L SVL  C++L  L  G+ IH +A
Sbjct: 271 WSAMIDGYIQEGCFMEALEIFHQMQ-KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA 329

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
            R  +  D  L  +L+DMY+KCG +D A  VFE  S NK+  +W++++ G  +HG+  +A
Sbjct: 330 KRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDA 388

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + L++KM      P+ IT VGVL+AC   GL+ +GL I+NS+   Y ++P  E   C+VD
Sbjct: 389 IDLFSKMDIY---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVD 445

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           +LGRAG L  A   + ++P EP+P++WGAL+ A   HGN E+ +   K L++LEP+N   
Sbjct: 446 LLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGR 505

Query: 464 YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI-HGKTHCFSVADKAHPCSVS 522
           Y  LSN+YA + RW+ V E+R +MK+RG+K +PG S I +  G+ H F + D +HP    
Sbjct: 506 YTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKD 565

Query: 523 IYEMLDDLI--LIMRGAAASP 541
           IY+MLD +   L M G    P
Sbjct: 566 IYQMLDKVKERLQMEGYEPDP 586


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 177/494 (35%), Positives = 286/494 (57%), Gaps = 6/494 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K+ H+ I+ L    + F+ TK++           + ++F  +++ +V+ YN++I  Y  N
Sbjct: 24  KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHN 83

Query: 100 HGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
           H H  A+ +F+ M  + + SPD FT   + K    +    +G  +H    K G     I 
Sbjct: 84  HKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAIT 143

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            N+L+ MY KCG  S    +++EM +R+  SWN  ISGH   G       +R VFD+M  
Sbjct: 144 ENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMK---SAREVFDEMPC 200

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           R + +WT MINGY + G   +AL +F EMQ+   IEP+++S++SVLP C+ L  L  GK 
Sbjct: 201 RTIVSWTTMINGYARGGCYADALGIFREMQVVG-IEPDEISVISVLPACAQLGALEVGKW 259

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           IH ++ +     +  + NAL++MY+KCG +D A  +F +    KD I+WS+++ G   HG
Sbjct: 260 IHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLF-NQMIEKDVISWSTMIGGLANHG 318

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           KG+ A+ ++  M   G  P+ +T VGVLSAC  +GL NEGL  ++ +   Y ++P  E  
Sbjct: 319 KGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHY 378

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C+VD+LGR+GQ+++ALD I  MP++P    W +L+S+  +H N E+  +A + L++LEP
Sbjct: 379 GCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEP 438

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
           E   NYV L+N+YA   +W+ V+ +R +++ + +KK+PGCS I ++     F   D + P
Sbjct: 439 EESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQEFVSGDDSKP 498

Query: 519 CSVSIYEMLDDLIL 532
            S  ++ +L  L L
Sbjct: 499 FSQEVFWILKGLTL 512



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 158/393 (40%), Gaps = 75/393 (19%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI--- 93
           +L +Q H+ +   G  ++      LI  Y  CG  + +  V+  +  +D   +NSLI   
Sbjct: 123 RLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGH 182

Query: 94  ----------------------------NGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125
                                       NGY +   + +AL +F  M    + PD+ ++ 
Sbjct: 183 VRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVI 242

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           ++     ++  L VG  IH  S K GF+ +  + N+L+ MY KCG   E   LF++M ++
Sbjct: 243 SVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEK 302

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
           +V SW+  I G A+ G                            GY        A+ +F 
Sbjct: 303 DVISWSTMIGGLANHG---------------------------KGYA-------AIRVFE 328

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGL--SGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           +MQ K  + PN V+ V VL  C+   GL   G +      +   L   +     L+D+  
Sbjct: 329 DMQ-KAGVTPNGVTFVGVLSACAH-AGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLG 386

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP--DIIT 361
           + G ++ A           D+ TW+S++S   +H     AV+   +++ L  +   + + 
Sbjct: 387 RSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVL 446

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           +  + +   +     EG+     +I + RIK T
Sbjct: 447 LANIYAKLDKW----EGVSNVRKLIRSKRIKKT 475



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L++ K  H      G + N  V   L+  YA CG   ++  +FN +  KDV  ++++I 
Sbjct: 253 ALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIG 312

Query: 95  GYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           G + NHG    A+ +F +M  + V+P+  T   +          N G+    + +++ + 
Sbjct: 313 G-LANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDV-MRVDYH 370

Query: 154 VDVILAN--SLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRIS 195
           ++  + +   L+ +  + G+  + L+   +MP Q +  +WN  +S
Sbjct: 371 LEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLS 415


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 188/542 (34%), Positives = 304/542 (56%), Gaps = 37/542 (6%)

Query: 36  LKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +K   + HS+I+   H+  +P ++ KL+ AY+  G+ + ++ +F+    K+V  +N +I 
Sbjct: 51  IKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIR 110

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            YV N+ + EAL +F  M     +PD +T   + K    + +L VG+ +H   +K+G   
Sbjct: 111 SYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDT 170

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF----------- 203
           ++ + N+L++MY KCG   E   + D+MP R+V SWN  ++G+A SG F           
Sbjct: 171 NLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD 230

Query: 204 SL-----------------------VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           SL                       V     +F++M ++N+ +W  MI  YV N   +EA
Sbjct: 231 SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEA 290

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           + LFL+M+ +  ++P+ V++ S+LP C  L  L  G+++H +  +  L  ++ L NAL+D
Sbjct: 291 VSLFLQME-ECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLD 349

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY+KCG L+ AR VF+     +D ++W+S++S YG  G+G++AV L+ KM+  G  PD I
Sbjct: 350 MYAKCGCLEEARDVFDKMRL-RDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSI 408

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
             V VLSAC  +GL+++G   +  +   Y I P  E  AC+VD+ GRAG+++ A  FIK 
Sbjct: 409 AFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQ 468

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP+EP+  +WGAL+SA  +H   ++  +A   L QL P+    YV LSN+YA +  W  V
Sbjct: 469 MPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDV 528

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540
             +R  MK  G+KK PG S + ++G+ H F   D+ HP + +IY  LD L+  M+     
Sbjct: 529 MNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYI 588

Query: 541 PH 542
           P 
Sbjct: 589 PQ 590



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 160/344 (46%), Gaps = 44/344 (12%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L++  Q H  I+ +G  +N F+   L+  Y  CG   +++ V + + ++DV  +NS++ 
Sbjct: 152 NLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVA 211

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY ++   ++ALE+   M   N++ D  T+A++S +       NV   IH +  ++    
Sbjct: 212 GYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV-QYIHNMFERMT-KK 269

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG-HASSGDFSLVVRSRR-- 211
           ++I  N ++++YV     +E ++LF +M +  +    V I+    + GD S +   RR  
Sbjct: 270 NLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLH 329

Query: 212 ---------------------------------VFDQMKRRNVYAWTAMINGYVQNGDLD 238
                                            VFD+M+ R+V +WT+M++ Y ++G   
Sbjct: 330 KYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGY 389

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE---LNHDVSLC 295
           +A+ LF +M L     P+ ++ VSVL  CS    L  G+  H F +  E   +   +   
Sbjct: 390 DAVALFAKM-LDSGQNPDSIAFVSVLSACSHTGLLDQGR--HYFRMMTEQYGIVPRIEHF 446

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
             ++D++ + G ++ A    +      +   W +++S   +H K
Sbjct: 447 ACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSK 490



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 2/179 (1%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L       +L L ++ H  I       N  +   L+  YA CG   +++ VF+
Sbjct: 306 AVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFD 365

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            ++ +DV  + S+++ Y ++    +A+ LF+ M  S  +PD     ++         L+ 
Sbjct: 366 KMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQ 425

Query: 140 GM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISG 196
           G      ++ + G V  +     ++ ++ + G+  E  +   +MP + N   W   +S 
Sbjct: 426 GRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSA 484


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 176/459 (38%), Positives = 266/459 (57%), Gaps = 3/459 (0%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F+ I    V+LYN LI  Y  +  H++   L++ M     SP++ +   +      +  
Sbjct: 38  LFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSS 97

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
              G ++H   +K GF  DV    +L+ MY K G  S     FDEM  R+V +WN  I+G
Sbjct: 98  HQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAG 157

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +A  GD    +    +F  M  RNV +WTAMI+GY QNG   +AL +FL M+ +  + PN
Sbjct: 158 YARCGDLEGALE---LFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPN 214

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           +V+L SVLP C++L  L  G++I  +A       ++ + NAL++MY++CG +D A  VFE
Sbjct: 215 EVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFE 274

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           +    ++  +W+S++ G  +HG+  EA+ L+ KM+  G+ PD +T VGVL AC   G++ 
Sbjct: 275 EIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVV 334

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EG   + S+   + I P  E   C+VD+LGRAG+L  A D I  MP+EP   +WG L+ A
Sbjct: 335 EGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGA 394

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
              HG+ E+ + A  +L +LEP NP NYV LSN+YA++ RWD VA LR +MK   + K+ 
Sbjct: 395 CSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAA 454

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           G S+I   G  H F V D++H  S  IY +LD++ + M+
Sbjct: 455 GYSFIEEGGHIHKFIVEDRSHSRSDEIYALLDEVSMKMK 493



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 127/286 (44%), Gaps = 48/286 (16%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM-YYSNVSP 119
           +I  YA CG    +  +F  +  ++V  + ++I+GY +N  + +AL +F  M   + + P
Sbjct: 154 MIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRP 213

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           ++ TLA++      +  L VG  I   +   G+  ++ ++N+L+ MY +CG+  +   +F
Sbjct: 214 NEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVF 273

Query: 180 DEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           +E+  +RN+ SWN                                  +MI G   +G  D
Sbjct: 274 EEIDGRRNLCSWN----------------------------------SMIMGLAVHGRCD 299

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           EA+ LF +M L++   P+ V+ V VL  C+      GG  + G    + +  D S+   L
Sbjct: 300 EAIELFYKM-LREGAAPDDVTFVGVLLACT-----HGGMVVEGQHFFESMERDFSIAPKL 353

Query: 299 ------IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
                 +D+  + G L  A  +        D++ W +++     HG
Sbjct: 354 EHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHG 399



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 13/197 (6%)

Query: 50  GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ-HKDVYLYNSLINGYVKNHGHNEALEL 108
           G+  N +VS  L+  YA CG+  ++  VF  I   +++  +NS+I G   +   +EA+EL
Sbjct: 245 GYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIEL 304

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL------ 162
           F  M     +PDD T   +      +   + GM++ G         D  +A  L      
Sbjct: 305 FYKMLREGAAPDDVTFVGVL-----LACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCM 359

Query: 163 MSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           + +  + G+  E  +L   MP + +   W   +   +  G   L  ++     +++  N 
Sbjct: 360 VDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNP 419

Query: 222 YAWTAMINGYVQNGDLD 238
             +  + N Y   G  D
Sbjct: 420 GNYVILSNIYATAGRWD 436


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 175/512 (34%), Positives = 297/512 (58%), Gaps = 5/512 (0%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  +Q H  +L  G   N FV T L+  Y LCGQ   ++ VF+     DV  +N +I+
Sbjct: 154 ALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIIS 213

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            Y K     E+  LF  M    V P   TL  +     ++KDL  G  +H          
Sbjct: 214 AYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVES 273

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +++L N+++ MY  CG+    L +F  M  R++ SW   +SG  + G+  +   +R  FD
Sbjct: 274 NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDV---ARNYFD 330

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  ++  +WTAMI+GY+++    EAL LF  MQ  + ++P++ ++VSVL  C+ L  L 
Sbjct: 331 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATN-VKPDEFTMVSVLTACAHLGALE 389

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+ I  +  R ++ +D+ + NALIDMY KCG +D A  +F + S  +D  TW++++ G 
Sbjct: 390 LGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGL 448

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            ++G G +A+ +++ M+     PD IT +GVLSAC  +GL+++G + +  + + + I+P 
Sbjct: 449 AVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPN 508

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
                C+VD+L RAG+L  A + I+ MP++ +  +WGAL++   ++  S+M ++  K ++
Sbjct: 509 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL 568

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEP+N + YV L N+YA+ +RW+ + ELR MM D+G+KK PGCS I ++G+ H F   D
Sbjct: 569 ELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGD 628

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
           ++HP + +I   LD +   ++ A  SP + ++
Sbjct: 629 RSHPQTKNIDAKLDKMTQDLKLAGYSPDISEV 660



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 199/451 (44%), Gaps = 81/451 (17%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC-----GQPTQSQLVFNSIQHKDV 86
           T  S+   +Q H Q +  G  +NP +  +++T    C     G    ++ +F+ I   ++
Sbjct: 48  TCESMDQLQQVHCQAIKKGLNANPVLQNRVMT---FCCTHEYGDFQYARRLFDEIPEPNL 104

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD--LNVGMLIH 144
           +++N++I GY +       + L+  M    V PD +T   + K  G  +D  L  G  +H
Sbjct: 105 FIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFK--GFTRDIALEYGRQLH 162

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
           G  +K G   +V +  +L+ MY+ CG+      +FD  P+ +V +WN+ IS +   G F 
Sbjct: 163 GHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFE 222

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
               SRR+F  M+ + V                                 P  V+LV VL
Sbjct: 223 ---ESRRLFLVMEDKQVL--------------------------------PTTVTLVLVL 247

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             CS L  L  GK++H +    ++  ++ L NA+IDMY+ CG +D A  +F  S  N+D 
Sbjct: 248 SACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFR-SMNNRDI 306

Query: 325 ITWSSIVSGYGLHG-------------------------------KGHEAVLLYNKMVCL 353
           I+W++IVSG+   G                               +  EA+ L+  M   
Sbjct: 307 ISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT 366

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
             KPD  T+V VL+AC   G +  G E   + I+  +IK    +   ++DM  + G +D+
Sbjct: 367 NVKPDEFTMVSVLTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDK 425

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           A    + M  +     W A++    ++G+ E
Sbjct: 426 AESIFREMS-QRDKFTWTAMIVGLAVNGHGE 455



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 145/293 (49%), Gaps = 10/293 (3%)

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           GDF     +RR+FD++   N++ W  MI GY +       + L+LEM L+  ++P++ + 
Sbjct: 87  GDFQY---ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEM-LRRGVKPDRYTF 142

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
             +    +  I L  G+Q+HG  ++  L ++V +  AL+ MY  CG LD AR VF D   
Sbjct: 143 PFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF-DVCP 201

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
             D ITW+ I+S Y   GK  E+  L+  M      P  +T+V VLSAC +   +  G +
Sbjct: 202 KADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKK 261

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           +++ V N  +++    +   ++DM    G++D AL   ++M      S W  +VS     
Sbjct: 262 VHSYVKNC-KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIIS-WTTIVSGFTNL 319

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           G     D+A     ++  ++  ++ ++ + Y  S R+    EL   M+   +K
Sbjct: 320 GEI---DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 369



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 181/416 (43%), Gaps = 81/416 (19%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHR--SLKLTKQSHSQILSLGHISNPFVSTK 60
              +R  F ++  +     TV   L +SA  +   L+  K+ HS + +    SN  +   
Sbjct: 221 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENA 280

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDV---------------------YL----------Y 89
           +I  YA CG+   +  +F S+ ++D+                     Y           +
Sbjct: 281 MIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSW 340

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
            ++I+GY++++   EALELF NM  +NV PD+FT+ ++      +  L +G  I     +
Sbjct: 341 TAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDR 400

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
                D+ + N+L+ MY KCG   +  ++F EM QR+  +W                   
Sbjct: 401 NKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTW------------------- 441

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
                          TAMI G   NG  ++AL +F  M LK  I P++++ + VL  C+ 
Sbjct: 442 ---------------TAMIVGLAVNGHGEKALDMFSNM-LKASILPDEITYIGVLSACTH 485

Query: 270 LIGLSGGKQIHGFAIRKELNH----DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
              +  G++   + +R    H    +++    L+D+ ++ G L  A  V E+     ++I
Sbjct: 486 TGLVDKGRK---YFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSI 542

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD----IITIVGVLSACGRSGLINE 377
            W ++++G  ++ +   A ++  +++ L  +PD     + +  + +AC R   + E
Sbjct: 543 VWGALLAGCRVYRESDMAEMVVKQILEL--EPDNGAVYVLLCNIYAACKRWNDLRE 596


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 190/540 (35%), Positives = 310/540 (57%), Gaps = 17/540 (3%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           LV   ++ SA     L   A  + LKL  Q HS +    ++S+ ++ + L+  Y+ CG+ 
Sbjct: 148 LVNEYSFGSA-----LSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRV 202

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             +Q VF+ +  +    +NSLI  Y +N   +EAL++F  M    V PD+ TLA++    
Sbjct: 203 EYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSAC 262

Query: 132 GEIKDLNVGMLIHGLSIKIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
             I  +  G  IH   +K   F  D+IL N+L+ MY KC + +E   +FD MP R+V S 
Sbjct: 263 ATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSE 322

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
              +SG+A +   S V  +R +F  M  ++V  W A+I G  QNG+ +EAL+LF  ++ +
Sbjct: 323 TSMVSGYAKA---SKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLK-R 378

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIH------GFAIRKELNHDVSLCNALIDMYSK 304
           + + P   +  ++L  C++L  L  G+Q H      GF  +   + DV + N+LIDMY K
Sbjct: 379 ESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMK 438

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           CGS++   RVF+     KD ++W++++ GY  +G G++A+ ++ KM+  G  PD +T++G
Sbjct: 439 CGSVENGCRVFQ-HMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIG 497

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
           VL AC  +GL++EG   + S+   + + P  +   C+VD+LGRAG L+ A + I+ M ++
Sbjct: 498 VLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQ 557

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484
           P   +WG+L++A  +H N ++ +   K L++++PEN   YV LSN+YA +R W  V  +R
Sbjct: 558 PDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVR 617

Query: 485 TMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
            +M+ RG+ K PGCSWI I G+ + F V DK H     IY +L  ++  M+ A   P++G
Sbjct: 618 KLMRQRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQMKQAGYVPYVG 677



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 148/281 (52%), Gaps = 5/281 (1%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H   IK  F  +  + N L+ +Y KCG       LFD M +RN+ SWN  I     SG 
Sbjct: 41  VHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGF 100

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
               V    +F++M + +  +W +MI+G+ Q+G  DEALV F +M     +  N+ S  S
Sbjct: 101 LDDAV---HIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFL-VNEYSFGS 156

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L  C+ L  L  G QIH    R     DV + +AL+DMYSKCG ++ A+ VF++ +  +
Sbjct: 157 ALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTV-R 215

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
             ++W+S+++ Y  +G   EA+ ++ +M+  G +PD +T+  V+SAC     I EG +I+
Sbjct: 216 SRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIH 275

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
             V+     +    +   ++DM  +  +++ A      MP+
Sbjct: 276 ARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPI 316



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 200/427 (46%), Gaps = 79/427 (18%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+     L   A  RS + T + H+ I+     S  F+  +LI  Y  CG    ++ +F+
Sbjct: 19  SSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFD 78

Query: 80  SIQHKDVYLYNSLINGYVKN------------------------------HGH-NEALEL 108
            +  ++++ +NS+I  + K+                              HG  +EAL  
Sbjct: 79  RMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVY 138

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           F+ M+      ++++  +       ++DL +G  IH L  +  ++ DV + ++L+ MY K
Sbjct: 139 FAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSK 198

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG+     ++FDEM                        VRSR            +W ++I
Sbjct: 199 CGRVEYAQSVFDEM-----------------------TVRSR-----------VSWNSLI 224

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-KE 287
             Y QNG +DEAL +F+EM +K  +EP++V+L SV+  C+++  +  G+QIH   ++  E
Sbjct: 225 TCYEQNGPVDEALKIFVEM-IKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDE 283

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
             +D+ L NAL+DMY+KC  ++ AR +F D    +  ++ +S+VSGY    K   A  ++
Sbjct: 284 FRNDLILGNALLDMYAKCNRINEARIIF-DMMPIRSVVSETSMVSGYAKASKVKVARYMF 342

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY-----NSVINT-YRIKPTTEICACV 401
           + M+      D+IT   +++ C ++G   E L ++      SV  T Y        CA +
Sbjct: 343 SNMMV----KDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANL 398

Query: 402 VDM-LGR 407
            D+ LGR
Sbjct: 399 ADLQLGR 405



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 92/211 (43%), Gaps = 36/211 (17%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------ 316
           +L  C+         ++H   I+     +  + N LID+Y KCG +D AR++F+      
Sbjct: 25  LLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERN 84

Query: 317 ------------DSSFNKDAI------------TWSSIVSGYGLHGKGHEAVLLYNKMVC 352
                        S F  DA+            +W+S++SG+  HG+  EA++ + +M  
Sbjct: 85  IFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHG 144

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC--ACVVDMLGRAGQ 410
            G   +  +    LSAC     +  G +I++ V   YR    +++   + +VDM  + G+
Sbjct: 145 HGFLVNEYSFGSALSACAGLQDLKLGSQIHSLV---YRSNYLSDVYMGSALVDMYSKCGR 201

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++ A      M V    S W +L++    +G
Sbjct: 202 VEYAQSVFDEMTVRSRVS-WNSLITCYEQNG 231


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 189/521 (36%), Positives = 301/521 (57%), Gaps = 13/521 (2%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL--VFNSIQHKDVYLYNS 91
           ++L   KQ H++IL  G   + +V  KLI        P       +FN + + + +LYN+
Sbjct: 57  KNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNA 116

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           LI GY+      E+ E +S M    V P  FT   + K  G   D+ +G  IHG +I +G
Sbjct: 117 LIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVG 176

Query: 152 -FVVDVILANSLMSMYVKCGKFSEC-LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            F  D+ + NS++ MY+KCG F EC   +FDEMP R+V SW   IS +  SG+      +
Sbjct: 177 GFGEDLHVGNSMIDMYIKCG-FLECGRKVFDEMPNRDVISWTELISAYVKSGNME---SA 232

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
             +FD +  +++ AWT M++G+ QN    EA++ F +MQ +  +E ++++L+ V+  C+ 
Sbjct: 233 GELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQ-EFGVETDEITLIGVISACAQ 291

Query: 270 LIGLSGGKQIHGFAIRKEL--NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           L        I   A + E    H V + +ALIDMYSKCGS+  A RVF+     ++  ++
Sbjct: 292 LGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMK-ERNVYSY 350

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           SS++ G+ +HG+ H+A+ L+++MV    KP+ +T +GVL+AC  +G++ +G +I+  +  
Sbjct: 351 SSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEK 410

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            Y IKP+ +   C+VD+LGRAG+L  A + +KTMP+EP   +WGAL+ A  +H + ++  
Sbjct: 411 CYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAA 470

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI-SIHGK 506
           +A   L +LEP    NY+ L+N+YAS  RW+ V+ +R +M+ RGL+K+P  SWI S  G 
Sbjct: 471 IAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGM 530

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
            H F   D  HP S  I + L+DL+  +      PHL  ++
Sbjct: 531 VHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVS 571


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 184/512 (35%), Positives = 293/512 (57%), Gaps = 5/512 (0%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L   A     +  K  H++I+ +    +  V   L+  YA CG    S+ VFN
Sbjct: 125 SMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFN 184

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           +++  +V  + SLI+G        E  ++F  M    V  D+F LATI  +     ++++
Sbjct: 185 TLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISI 244

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG ++K G    V + N+ +SMY KCG F +    F+ M   +V SW   I+  + 
Sbjct: 245 GEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSH 304

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
           SG+   V R+R  F++M  RNV +W AM+  Y QN   +E L L++ M L+  + P+ ++
Sbjct: 305 SGN---VERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILM-LRQEVRPDWIT 360

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            V+++  CS L     G QI   A++  L  DVS+ N+ I +YS+CG ++ A+ +F DS 
Sbjct: 361 FVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLF-DSI 419

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             K+ I+W+SI+ GY  +G+G + + ++  M+  G KPD IT + +LS C  SGL+ E  
Sbjct: 420 QEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAK 479

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             +NS+   + I  T E   C+VD+ GRAG L  ALD I  MP +P+ SIWGAL+SA  +
Sbjct: 480 YHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGALLSACRI 539

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H ++EM +LA K+L++L  EN  +Y+ L+N Y+S  R + V+E+R +MK++ ++K PGCS
Sbjct: 540 HHDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMKEKRVQKDPGCS 599

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           WI +  + H F+  D +HP    IY+ L+D++
Sbjct: 600 WIEVCNRVHVFTANDTSHPQVKDIYKALEDIV 631



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 174/367 (47%), Gaps = 14/367 (3%)

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           + +   +HGLS K GF  + ++ NS++ MY+KC        +F  + + ++ SWN  I G
Sbjct: 9   IRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYG 68

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           ++   +     R+   F QM  R+  +W  +I+ +  +G   ++L  F+EM ++   +PN
Sbjct: 69  YSKLHEMG---RAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQG-CQPN 124

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            ++  SVL  C+++     GK +H   +R E   DV + N L+DMY+KCG +D ++RVF 
Sbjct: 125 SMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVF- 183

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           ++    + +TW+S++SG    G   E   ++ +M       D   +  +L  C     I+
Sbjct: 184 NTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNIS 243

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G +++   + T  +  +  +    + M  + G  ++A    +TM      S W  ++++
Sbjct: 244 IGEQLHGFTVKT-GMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVIS-WTTMITS 301

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
               GN E    A     ++   N  ++ ++   Y  +  W+   +L  +M    L++  
Sbjct: 302 FSHSGNVER---ARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILM----LRQEV 354

Query: 497 GCSWISI 503
              WI+ 
Sbjct: 355 RPDWITF 361



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 104/520 (20%), Positives = 204/520 (39%), Gaps = 100/520 (19%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           +++  Q H      G  +N  +   +I  Y  C     ++ VF  I+   ++ +N +I G
Sbjct: 9   IRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYG 68

Query: 96  YVK------------------------------NHG-HNEALELFSNMYYSNVSPDDFTL 124
           Y K                              +HG H ++L  F  M+     P+  T 
Sbjct: 69  YSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTY 128

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           A++      I D   G  +H   +++   +DV++ N L+ MY KCG       +F+ + +
Sbjct: 129 ASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLRE 188

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
            NV +W                                  T++I+G    G  +E   +F
Sbjct: 189 HNVVTW----------------------------------TSLISGIAHFGSQEEVYDIF 214

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
            +M+ KD +  +   L ++L  C     +S G+Q+HGF ++  +N  V + NA + MY+K
Sbjct: 215 YQMR-KDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAK 273

Query: 305 CGSLDCARRVFED-------------SSFN-----------------KDAITWSSIVSGY 334
           CG  + A   FE              +SF+                 ++ I+W++++  Y
Sbjct: 274 CGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAY 333

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +    E + LY  M+    +PD IT V ++ AC    +   G +I +  +    +   
Sbjct: 334 CQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKV-GLGSD 392

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
             +    + +  R G+++ A +   ++  E +   W +++     +G        +++++
Sbjct: 393 VSVVNSAITLYSRCGRIEEAQNLFDSIQ-EKNLISWNSIMGGYAQNGEGMKVIEIFQNML 451

Query: 455 Q--LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
               +P++ +    LS    S    +A     +M KD G+
Sbjct: 452 MAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTKDFGI 491



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 99/219 (45%), Gaps = 37/219 (16%)

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF---EDSSF-- 320
            CSS+  +    Q+HG + +    ++  + N++IDMY KC ++  A +VF   E  S   
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61

Query: 321 -------------------------NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
                                     +D+++W++I+S +  HG   +++  + +M   G 
Sbjct: 62  WNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC 121

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDR 413
           +P+ +T   VLSAC        G  ++  ++   R++P  ++     +VDM  + G +D 
Sbjct: 122 QPNSMTYASVLSACANIYDFQWGKHLHARIV---RVEPFLDVLVGNGLVDMYAKCGLIDA 178

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQDLAYK 451
           +     T+  E +   W +L+S     G+  E+ D+ Y+
Sbjct: 179 SKRVFNTLR-EHNVVTWTSLISGIAHFGSQEEVYDIFYQ 216


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  344 bits (883), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 181/509 (35%), Positives = 297/509 (58%), Gaps = 10/509 (1%)

Query: 29  VSATHRSLKLT--KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           +++     K+T  K+ H+ ++ L    + F+ TK++ +    G  + + L+F  + H ++
Sbjct: 14  ITSLKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNI 73

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYY---SNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           + YN++I  Y  N  H+ A+ +F  M     ++V PD FT   + K    I    +GM +
Sbjct: 74  FTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQV 133

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HGL  K G     I  N+L+ MY K G  +    +F+EM  R+V SWN  I G+   G  
Sbjct: 134 HGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQM 193

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
           +    +R +FD M  R + +WT MI GY + G   +AL +F EMQ+   IEP+++S+++V
Sbjct: 194 N---SARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVG-IEPDEISIIAV 249

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           LP C+ L  L  GK IH +A +        +CNALI+MY+KCG +D A  +F D    KD
Sbjct: 250 LPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLF-DQLVEKD 308

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            I+WS+++ G   HGKG+EA+ L+ +M  +   P+ IT +GVL AC  +GL +EGL+ ++
Sbjct: 309 VISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFD 368

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            +  +Y I+P  E   C++D+LGR+G L +ALD I  MP++P   IW +L+S+  +H N 
Sbjct: 369 VMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNL 428

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           ++  +A K L++LEPE   NYV L+N+YA   +W+ V+ +R +++++ +KK+PG S I +
Sbjct: 429 QIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEV 488

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           +     F  +D + P S  ++ +L+ L L
Sbjct: 489 NNVVQEFVSSDDSKPFSQEVFWILEGLAL 517


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 189/511 (36%), Positives = 292/511 (57%), Gaps = 9/511 (1%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-K 84
           F+Q+     SL   KQ H+Q+++ G   N  +   LI +Y  C   + +++VF+      
Sbjct: 58  FVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLP 117

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNM--YYSNVSPDDFTLATISKLSGEIKDLN-VGM 141
              ++N +I  Y K     E+L LF  M  +    S D +T   +         L   G 
Sbjct: 118 PTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGE 177

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HG+ +K G+  D+ + NSL++MY    +  +   +FDEMPQR+V +W   + G+A  G
Sbjct: 178 NVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRG 237

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           +   +VR+R +FD M  RN  +W  M+ GYV +   +EAL  F +M   D ++PN+  LV
Sbjct: 238 E---LVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLV 294

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C+ L  L  GK IH +  +  +    ++  ALIDMY+KCG +DCARRVF D    
Sbjct: 295 SILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVF-DGLHK 353

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D +TW+S++SG  +HG G E +  +++M+  G KPD IT++GVL+ C  SGL+ EGL I
Sbjct: 354 RDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSI 413

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++ +I  + I P  E   C++D+LGRAG+L+ A + IK+MP+EP    W AL+SA  +HG
Sbjct: 414 FHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHG 473

Query: 442 NSEMQDLAYKSLIQLEP-ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
           + ++ +     + +L P  +   YV LSNLYAS  +W++V ++R  M  RG +  PGCSW
Sbjct: 474 DVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSW 533

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           I I G  H F  ADK HP    I + L++++
Sbjct: 534 IEIDGVVHEFLAADKLHPRISEINKKLNEVL 564


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  344 bits (882), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 192/540 (35%), Positives = 288/540 (53%), Gaps = 31/540 (5%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H L+     +SL   K+ H   L     ++  V  KL   Y  C Q   ++ +F+ I + 
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
            V L+N +I  Y  N   + A++L+ +M +  V P+ +T   + K    +  +  G+ IH
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG--- 201
             +   G   DV +  +L+  Y KCG   E   LF  M  R+V +WN  I+G +  G   
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD 192

Query: 202 --------------------------DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
                                         ++ +R++FD M  RN  +W+AMI GYV + 
Sbjct: 193 DAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASD 252

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
            + EAL +F  MQL   I+P+  +++ VLP CS L  L  G   HG+ I +    D  +C
Sbjct: 253 CMKEALDIFRMMQLSG-IDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLIC 311

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           NALIDMYSKCG +  AR VF       D ++W++++ GYG+HG G EA+ L++ ++ LG 
Sbjct: 312 NALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGL 370

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
           KPD IT + +LS+C  SGL+ EG   ++++   + I P  E C C+VD+LGRAG +D A 
Sbjct: 371 KPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAH 430

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
            FI+ MP EP   IW AL+SA  +H N E+ +   K +  L PE+  N+V LSN+Y+++ 
Sbjct: 431 HFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 490

Query: 476 RWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           RWD  A +R   KD GLKK PGCSWI I+G  H F   D++H     I   L++L++ M+
Sbjct: 491 RWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMK 550



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 102/213 (47%), Gaps = 9/213 (4%)

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           M L+  ++ N + L   L  C     L+  K+IH   ++   N D S+ + L  +Y  C 
Sbjct: 1   MPLRFEVKNNYLHL---LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCN 57

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
            +  ARR+F++   N   I W+ I+  Y  +G    A+ LY+ M+ LG +P+  T   VL
Sbjct: 58  QVVLARRLFDEIP-NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVL 116

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
            AC     I +G+EI++     + ++    +C  +VD   + G L  A     +M     
Sbjct: 117 KACSGLLAIEDGVEIHSHA-KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            + W A+++   ++G   + D A + ++Q++ E
Sbjct: 176 VA-WNAMIAGCSLYG---LCDDAVQLIMQMQEE 204


>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  344 bits (882), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 166/460 (36%), Positives = 272/460 (59%), Gaps = 4/460 (0%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F+  Q+   +LYN LI  Y  +H  +E++ L++ + +  + P   T   I   S     
Sbjct: 31  LFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSS 90

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
                L+H    + GF  D     +L++ Y K G       +FDEM +R+V  WN  I+G
Sbjct: 91  ARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITG 150

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +   GD    +    +FD M R+NV +WT +I+G+ QNG+  EAL +FL M+    ++PN
Sbjct: 151 YQRRGDMKAAME---LFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPN 207

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            +++VSVLP C++L  L  G+++ G+A       ++ +CNA I+MYSKCG +D A+R+FE
Sbjct: 208 HITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFE 267

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           +    ++  +W+S++     HGK  EA+ L+ +M+  G KPD +T VG+L AC   G++ 
Sbjct: 268 ELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVV 327

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +G E++ S+   ++I P  E   C++D+LGR G+L  A D IKTMP++P   +WG L+ A
Sbjct: 328 KGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGA 387

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
              HGN E+ ++A ++L +LEP NP N V +SN+YA++ +WD V  +R +MK   + K+ 
Sbjct: 388 CSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAA 447

Query: 497 GCSW-ISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           G S+ + +    H F+V DK+HP S  IY++L+++   M+
Sbjct: 448 GYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMK 487



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 142/344 (41%), Gaps = 82/344 (23%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R L+L    HSQ    G  S+ F  T LITAYA  G    ++ VF+ +  +DV ++N++I
Sbjct: 92  RPLRLL---HSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMI 148

Query: 94  NGYVKNHGHNEALELFSNMYYSNVS--------------------------------PDD 121
            GY +      A+ELF +M   NV+                                P+ 
Sbjct: 149 TGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNH 208

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T+ ++      + +L +G  + G + + GF  ++ + N+ + MY KCG       LF+E
Sbjct: 209 ITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEE 268

Query: 182 MP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           +  QRN+ SWN                                  +MI     +G  DEA
Sbjct: 269 LGNQRNLCSWN----------------------------------SMIGSLATHGKHDEA 294

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN--HDVSL---- 294
           L LF +M L++  +P+ V+ V +L  C     + GG  + G  + K +   H +S     
Sbjct: 295 LTLFAQM-LREGEKPDAVTFVGLLLAC-----VHGGMVVKGQELFKSMEEVHKISPKLEH 348

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
              +ID+  + G L  A  + +      DA+ W +++     HG
Sbjct: 349 YGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHG 392



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 120/290 (41%), Gaps = 40/290 (13%)

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           +V +R++FD  +    + +  +I  Y  +    E++VL+  +   D + P+  +   +  
Sbjct: 25  LVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSF-DGLRPSHHTFNFIFA 83

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
             +S       + +H    R     D   C  LI  Y+K G+L CARRVF++ S  +D  
Sbjct: 84  ASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMS-KRDVP 142

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKM----------------------------VCLGS-- 355
            W+++++GY   G    A+ L++ M                            +C+    
Sbjct: 143 VWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDK 202

Query: 356 --KPDIITIVGVLSACGRSGLINEG--LEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             KP+ IT+V VL AC   G +  G  LE Y      +       +C   ++M  + G +
Sbjct: 203 SVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFF---DNIYVCNATIEMYSKCGMI 259

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           D A    + +  + +   W +++ +   HG  +     +  +++ E E P
Sbjct: 260 DVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLR-EGEKP 308


>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
 gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
 gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
 gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 511

 Score =  344 bits (882), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 166/460 (36%), Positives = 272/460 (59%), Gaps = 4/460 (0%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F+  Q+   +LYN LI  Y  +H  +E++ L++ + +  + P   T   I   S     
Sbjct: 38  LFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSS 97

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
                L+H    + GF  D     +L++ Y K G       +FDEM +R+V  WN  I+G
Sbjct: 98  ARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITG 157

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +   GD    +    +FD M R+NV +WT +I+G+ QNG+  EAL +FL M+    ++PN
Sbjct: 158 YQRRGDMKAAME---LFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPN 214

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            +++VSVLP C++L  L  G+++ G+A       ++ +CNA I+MYSKCG +D A+R+FE
Sbjct: 215 HITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFE 274

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           +    ++  +W+S++     HGK  EA+ L+ +M+  G KPD +T VG+L AC   G++ 
Sbjct: 275 ELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVV 334

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +G E++ S+   ++I P  E   C++D+LGR G+L  A D IKTMP++P   +WG L+ A
Sbjct: 335 KGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGA 394

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
              HGN E+ ++A ++L +LEP NP N V +SN+YA++ +WD V  +R +MK   + K+ 
Sbjct: 395 CSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAA 454

Query: 497 GCSW-ISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           G S+ + +    H F+V DK+HP S  IY++L+++   M+
Sbjct: 455 GYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMK 494



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 142/344 (41%), Gaps = 82/344 (23%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R L+L    HSQ    G  S+ F  T LITAYA  G    ++ VF+ +  +DV ++N++I
Sbjct: 99  RPLRLL---HSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMI 155

Query: 94  NGYVKNHGHNEALELFSNMYYSNVS--------------------------------PDD 121
            GY +      A+ELF +M   NV+                                P+ 
Sbjct: 156 TGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNH 215

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T+ ++      + +L +G  + G + + GF  ++ + N+ + MY KCG       LF+E
Sbjct: 216 ITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEE 275

Query: 182 MP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           +  QRN+ SWN                                  +MI     +G  DEA
Sbjct: 276 LGNQRNLCSWN----------------------------------SMIGSLATHGKHDEA 301

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN--HDVSL---- 294
           L LF +M L++  +P+ V+ V +L  C     + GG  + G  + K +   H +S     
Sbjct: 302 LTLFAQM-LREGEKPDAVTFVGLLLAC-----VHGGMVVKGQELFKSMEEVHKISPKLEH 355

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
              +ID+  + G L  A  + +      DA+ W +++     HG
Sbjct: 356 YGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHG 399


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 178/476 (37%), Positives = 283/476 (59%), Gaps = 15/476 (3%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++  Y    +   ++ +F+ +  +D   +N++I+GY +N    EA  LF        SP 
Sbjct: 210 MMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE------SPV 263

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-VVDVILANSLMSMYVKCGKFSECLNLF 179
                  + +SG +++   GML     +  G    + +  N++++ YV+C +  +   LF
Sbjct: 264 RDVFTWTAMVSGYVQN---GMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELF 320

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           + MP +NV SWN  I+G+A +GD   + ++R  FD+M +R+  +W A+I GY Q+G  +E
Sbjct: 321 EAMPCQNVSSWNTMITGYAQNGD---IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 377

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           AL LF+EM+ +D    N+ +  S L TC+ +  L  GKQ+HG  ++  L     + NAL+
Sbjct: 378 ALHLFVEMK-RDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALL 436

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
            MY KCG++D A  VFE     K+ ++W+++++GY  HG G EA++L+  M   G  PD 
Sbjct: 437 VMYCKCGNIDDAYIVFEGIE-EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDD 495

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           +T+VGVLSAC  +GL+++G E + S+   Y I   ++   C++D+LGRAG+LD A + +K
Sbjct: 496 VTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMK 555

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            MP EP  + WGAL+ AS +HGN+E+ + A K + ++EP+N   YV LSNLYA+S RW  
Sbjct: 556 NMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGD 615

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           V  +R  M+DRG+KK PG SW+ +  K H F+V D  HP    IY  L++L L M+
Sbjct: 616 VGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMK 671



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 191/386 (49%), Gaps = 35/386 (9%)

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           ++L+F+ +  +DV  +N++++GY +N    EA E+F  M   N    +  LA   + +G 
Sbjct: 130 ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQ-NGR 188

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           I+D            K  +  ++I  N +M  YVK  +  +   +FD MP+R+  SWN  
Sbjct: 189 IEDAR-----RLFESKADW--ELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTM 241

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           ISG+A +G+   ++ ++R+F++   R+V+ WTAM++GYVQNG LDEA  +F  M  K+ +
Sbjct: 242 ISGYAQNGE---LLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV 298

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-----HDVSLCNALIDMYSKCGSL 308
             N +              ++G  Q       +EL       +VS  N +I  Y++ G +
Sbjct: 299 SWNAI--------------IAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDI 344

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
             AR  F D    +D+I+W++I++GY   G G EA+ L+ +M   G + +  T    LS 
Sbjct: 345 AQARNFF-DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 403

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
           C     +  G +++  V+    ++    +   ++ M  + G +D A  +I    +E    
Sbjct: 404 CAEIAALELGKQVHGRVVKA-GLESGCYVGNALLVMYCKCGNIDDA--YIVFEGIEEKEV 460

Query: 429 I-WGALVSASVMHGNSEMQDLAYKSL 453
           + W  +++    HG  +   + ++S+
Sbjct: 461 VSWNTMIAGYARHGFGKEALMLFESM 486



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 161/383 (42%), Gaps = 60/383 (15%)

Query: 2   ILSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           +L  AR  F  +  +N  S  A +  ++Q     ++ +L +    Q +S  +        
Sbjct: 281 MLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNT------- 333

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            +IT YA  G   Q++  F+ +  +D   + ++I GY ++    EAL LF  M       
Sbjct: 334 -MITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERL 392

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +  T  +      EI  L +G  +HG  +K G      + N+L+ MY KCG   +   +F
Sbjct: 393 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVF 452

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           + + ++ V SWN                                   MI GY ++G   E
Sbjct: 453 EGIEEKEVVSWNT----------------------------------MIAGYARHGFGKE 478

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL--SGGKQIHGFAIRKELNHDVSLCNA 297
           AL+LF  M+ K  I P+ V++V VL  CS   GL   G +  +       +  +      
Sbjct: 479 ALMLFESMK-KTGILPDDVTMVGVLSACSH-TGLVDKGTEYFYSMTQDYGITANSKHYTC 536

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHEAVLLYNKMVCLG 354
           +ID+  + G LD A+ + ++  F  DA TW +++    +HG    G +A  +  +M    
Sbjct: 537 MIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM---- 592

Query: 355 SKPD----IITIVGVLSACGRSG 373
            +PD     + +  + +A GR G
Sbjct: 593 -EPDNSGMYVLLSNLYAASGRWG 614



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 171/362 (47%), Gaps = 35/362 (9%)

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D+  +N  I  +++N   + AL LF++M      P   +++  + +SG + + +   L  
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSM------PRRSSISWNAMISGCLSN-DKFYLAR 100

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
            L  K+    D++  N ++S  V+         LFD+MP+R+V SWN  +SG+A +G   
Sbjct: 101 QLFEKMP-TRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNG--- 156

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
            V  ++ +FD+M  +N  +W  M+  YVQNG +++A  LF   + K   E     L+S  
Sbjct: 157 YVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF---ESKADWE-----LISWN 208

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
                 +  +      G   R     +VS  N +I  Y++ G L  A+R+FE+S   +D 
Sbjct: 209 CMMGGYVKRNRLVDARGIFDRMPERDEVSW-NTMISGYAQNGELLEAQRLFEESPV-RDV 266

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
            TW+++VSGY  +G   EA  +++ M    S      I G +  C R   +++  E++ +
Sbjct: 267 FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQ-CKR---MDQARELFEA 322

Query: 385 VINTYRIKPTTEICACVVDMLGRA--GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           +       P   + +    + G A  G + +A +F   MP   S S W A+++     G 
Sbjct: 323 M-------PCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS-WAAIIAGYAQSGY 374

Query: 443 SE 444
            E
Sbjct: 375 GE 376



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 106/234 (45%), Gaps = 4/234 (1%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           +T    L   A   +L+L KQ H +++  G  S  +V   L+  Y  CG    + +VF  
Sbjct: 395 STFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEG 454

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           I+ K+V  +N++I GY ++    EAL LF +M  + + PDD T+  +         ++ G
Sbjct: 455 IEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKG 514

Query: 141 M-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHA 198
               + ++   G   +      ++ +  + G+  +  NL   MP + +  +W   +    
Sbjct: 515 TEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASR 574

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
             G+  L  ++ ++  +M+  N   +  + N Y  +G   +  V  + ++++DR
Sbjct: 575 IHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGD--VGRMRLRMRDR 626


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 183/516 (35%), Positives = 292/516 (56%), Gaps = 36/516 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+TV   L  +A  + LK+        L +G     +V T LI+ Y+ CG    ++L+F 
Sbjct: 209 SSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFR 268

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I   D+  YN++I+G+  N G   +++LF  + +S       T+  +  L      L++
Sbjct: 269 RINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHL 328

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              IHG  +K G +++  ++ +  ++Y K       LN  D                   
Sbjct: 329 ACSIHGFCVKSGIILNPTVSTAFTAIYNK-------LNEID------------------- 362

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    +R +FD+   + V AW AMI+GY QNG  + A+ LF EM +K    PN V+
Sbjct: 363 --------LARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEM-MKTEFTPNAVT 413

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           + ++L  C+ L  LS GK +H     + L  ++ +  AL+DMY+KCG++  A ++F DS 
Sbjct: 414 ITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLF-DSM 472

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             K+ +TW++++ GYGLHG GHEA+ LYN+M+ LG  P  +T + VL AC  +GL+ EG 
Sbjct: 473 SEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGE 532

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           EI+++++N YRI+P  E  AC+VD+LGR+GQL++AL+FIK MPVEP P++WG L+ A ++
Sbjct: 533 EIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMI 592

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H ++++  LA + L +L+P +   YV LSN+Y+  R +   A +R ++K R L KSPGC+
Sbjct: 593 HKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCT 652

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            I ++G  H F   D++H  +  IY  L+ L   MR
Sbjct: 653 LIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMR 688



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 193/419 (46%), Gaps = 44/419 (10%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q+H+Q +  G+  +    TKL            ++ +F S+   D++L+N L+ G+  N 
Sbjct: 30  QTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLND 89

Query: 101 GHNEALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
             + ++ L++++   +N+SPD+FT A         K L   ML+H  SI  G+  +V + 
Sbjct: 90  SPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHL---MLLHAHSIIDGYGSNVFVG 146

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           ++L+ +Y K                                  FS VV +R+VFD M  R
Sbjct: 147 SALVDLYCK----------------------------------FSRVVYARKVFDGMPER 172

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           +   W  MING V+N   D+++ LF EM + D +  +  ++ +VLP  + L  L  G  I
Sbjct: 173 DTVLWNTMINGLVKNCCFDDSIQLFREM-VADGVRVDSSTVTAVLPAAAELQELKVGMGI 231

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
              A++        +   LI +YSKCG ++ AR +F   +   D I +++++SG+  +G 
Sbjct: 232 QCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRIN-RPDLIAYNAMISGFTANGG 290

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI-KPTTEIC 398
              +V L+ +++  G +    TIVG++      G ++    I+   + +  I  PT  + 
Sbjct: 291 TECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPT--VS 348

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
                +  +  ++D A       P E +   W A++S    +G++E     +K +++ E
Sbjct: 349 TAFTAIYNKLNEIDLARHLFDESP-EKTVVAWNAMISGYTQNGSTETAISLFKEMMKTE 406



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 134/328 (40%), Gaps = 38/328 (11%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L +    +S+T+   + + +    L L    H   +  G I NP VST     Y    + 
Sbjct: 302 LFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEI 361

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             ++ +F+    K V  +N++I+GY +N     A+ LF  M  +  +P+  T+ TI    
Sbjct: 362 DLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSAC 421

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
            ++  L+ G  +H L        ++ ++ +L+ MY KCG  SE   LFD M ++N  +WN
Sbjct: 422 AQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWN 481

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                                              MI GY  +G   EAL L+ EM L  
Sbjct: 482 T----------------------------------MIFGYGLHGYGHEALKLYNEM-LHL 506

Query: 252 RIEPNKVSLVSVLPTCS--SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
              P+ V+ +SVL  CS   L+G  G +  H    +  +   +     ++D+  + G L+
Sbjct: 507 GYNPSAVTFLSVLYACSHAGLVG-EGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLE 565

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLH 337
            A    +          W +++    +H
Sbjct: 566 KALEFIKKMPVEPGPAVWGTLLGACMIH 593


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  343 bits (881), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 180/520 (34%), Positives = 305/520 (58%), Gaps = 11/520 (2%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQP 71
           + S  YTS+     L   A   SL   KQ H++++ SL  I +P+V++ LI  YA CG  
Sbjct: 268 LDSTTYTSS-----LTACARLFSLGWGKQLHAKVIRSLPQI-DPYVASALIELYAKCGSF 321

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
            +++ VFNS+Q ++   +  LI G ++    ++++ELF+ M    ++ D F LAT+    
Sbjct: 322 KEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
               DL +G  +H L +K G    ++++NSL+S+Y KCG       +F  M +R++ SW 
Sbjct: 382 FNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWT 441

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
             I+ ++  G+   ++++R  FD M  RN   W AM+  Y+Q+G  ++ L ++  M  + 
Sbjct: 442 SMITAYSQIGN---IIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 498

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            + P+ V+ V++   C+ +     G QI G  ++  L  +VS+ NA I MYSKCG +  A
Sbjct: 499 DVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEA 558

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
           +++F D    KD ++W+++++GY  HG G +A   ++ M+  G+KPD I+ V VLS C  
Sbjct: 559 QKLF-DLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSH 617

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           SGL+ EG   ++ +   + I P  E  +C+VD+LGRAG L  A D I  MP++P+  +WG
Sbjct: 618 SGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWG 677

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
           AL+SA  +HGN E+ +LA K + +L+  +  +Y+ L+ +Y+ + + D  A++R +M+D+G
Sbjct: 678 ALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKG 737

Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           +KK+PG SW+ +  K H F   D +HP  ++I   LD+L+
Sbjct: 738 IKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELM 777



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 223/501 (44%), Gaps = 46/501 (9%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK-- 60
           L+ AR     + +    SA    FLQ +  H        S ++ L    I  P V T   
Sbjct: 20  LAGARALHGRLVTVGLASAV---FLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNI 76

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS-P 119
           ++  YA  G  + ++ +F+ +  +DV  +N+L++GY +     + LE F +M+ S  S P
Sbjct: 77  MMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLP 136

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           + FT   + K  G +    +   + GL  K  F  D  +  +L+ M+V+CG       LF
Sbjct: 137 NAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLF 196

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
            ++ +  +   N  ++G+A       +  +   F+ M  R+V +W  MI    Q+G + E
Sbjct: 197 SQIERPTIFCRNSMLAGYAK---LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVRE 253

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           AL L +EM  K  +  +  +  S L  C+ L  L  GKQ+H   IR     D  + +ALI
Sbjct: 254 ALGLVVEMHRKG-VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALI 312

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           ++Y+KCGS   A+RVF +S  ++++++W+ ++ G   +    ++V L+N+M       D 
Sbjct: 313 ELYAKCGSFKEAKRVF-NSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQ 371

Query: 360 ITIVGVLSAC--------GR--------SGLINEGLEIYNSVINTYRIKPTTEICACV-- 401
             +  ++S C        GR        SG  N  + + NS+I+ Y      +    V  
Sbjct: 372 FALATLISGCFNRMDLCLGRQLHSLCLKSGH-NRAIVVSNSLISLYAKCGDLQNAEFVFS 430

Query: 402 -------------VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
                        +    + G + +A +F   M    + + W A++ A + HG  E    
Sbjct: 431 SMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAIT-WNAMLGAYIQHGAEEDGLK 489

Query: 449 AYKSLIQLEPENPS--NYVSL 467
            Y +++  +   P    YV+L
Sbjct: 490 MYSAMLSQKDVTPDWVTYVTL 510



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 10/202 (4%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +L   L +C S   L+G + +HG  +   L   V L N L+  Y  CG+L  ARR+    
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
               + IT + +++GY   G   +A  L+++M     + D+ +   ++S   ++    +G
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRM----PRRDVASWNTLMSGYFQARRFLDG 121

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA---LDFIKTMPVEPSPSIWGALVS 435
           LE + S+  +    P      CV+   G  G  + A   L           P +  ALV 
Sbjct: 122 LETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVD 181

Query: 436 ASVMHGNSEMQDLAYKSLIQLE 457
             V  G     D A +   Q+E
Sbjct: 182 MFVRCG---YVDFASRLFSQIE 200


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  343 bits (881), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 198/552 (35%), Positives = 304/552 (55%), Gaps = 38/552 (6%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L+ S+ +TS           T R LK   Q H+  +  G I +P  + ++I   A   + 
Sbjct: 20  LILSKPFTSCK---------TPRDLK---QLHAIFIKTGQIQDPLTAAEVIKFCAFSSRD 67

Query: 72  TQ-SQLVFNSIQHKDVYLYNSLINGYVK---NHGHNEALELFSNMYYS-NVSPDDFTLAT 126
              ++ VF  +   + + +N+++    +    H  +EAL LFS M     V P+ FT  +
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE-----CLNLFD- 180
           + K       L  G  IHGL +K GF  D  + ++L+ MYV C    +     C N+ D 
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 181 ------EMPQR----NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
                 E+ +R    NV  WN+ I G    GD   +  ++ +FD+M  R+V +W  MI+G
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGD---IKSAKNLFDEMPPRSVVSWNVMISG 244

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           Y QNG   EA+ LF EMQ    I+PN V+LVSVLP  + +  L  GK IH +A + ++  
Sbjct: 245 YAQNGHFIEAINLFQEMQ-SSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEI 303

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           D  L +AL+DMYSKCGS+D A +VFE     ++AITWS+I+  + +HG+  +A++ ++ M
Sbjct: 304 DDVLGSALVDMYSKCGSIDKALQVFETLP-KRNAITWSAIIGAFAMHGRAEDAIIHFHLM 362

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G  P+ +  +G+LSAC  +GL+ EG   ++ ++    ++P  E   C+VD+LGRAG 
Sbjct: 363 GKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGH 422

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           L+ A + I+ MP+EP   IW AL+ A  MH N +M +   ++L++L P +  +YV+LSNL
Sbjct: 423 LEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNL 482

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YAS   W+AVA +R  MK   ++K PGCSWI IHG  H F V D +H  +  I  ML ++
Sbjct: 483 YASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEM 542

Query: 531 ILIMRGAAASPH 542
            + +R     P+
Sbjct: 543 SMKLRSNGYRPN 554


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 173/503 (34%), Positives = 291/503 (57%), Gaps = 6/503 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNP--FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL 92
           SL+  KQ H + ++LG + +    ++ KL+  Y   G P  +Q VFN IQ+ D+  +  L
Sbjct: 15  SLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCL 74

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           I+ Y+      +A  +FS++++S + PD F +       G  KDL+ G ++HG+  +   
Sbjct: 75  ISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFEL 134

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             D I+ N+L+ MY + G      ++F  M  ++V SW   ++G     D   +  +RR+
Sbjct: 135 GSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCND---IEAARRI 191

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
           FD+M  RN  +WTAMI GYVQ       L LF EM+ + +  P  +++V+VL  C+ +  
Sbjct: 192 FDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGA 251

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
              G  +HG+  +  L+ DV++ NAL+DMY+K G+L  A ++F++    +D  +W++++S
Sbjct: 252 FDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMP-KRDVFSWTTMIS 310

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           G  LHGKG  A+  ++ M   G  P+ +T++ VLSAC  +GL+ EG  ++  ++  + IK
Sbjct: 311 GLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIK 370

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           P  +   C+VD+LGRAG L  A + I+ MP++P   IW +L+SA ++HGN  + ++A K 
Sbjct: 371 PKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKM 430

Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           +I+LEP++   Y+ L N+Y S+ RW+   + R  M+DR +KK PGCSW+ ++G  H F  
Sbjct: 431 IIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVVHEFLA 490

Query: 513 ADKAHPCSVSIYEMLDDLILIMR 535
            D  H     +Y +L+ +   M+
Sbjct: 491 EDAVHCIRADVYTVLEAITEQMK 513


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 302/558 (54%), Gaps = 74/558 (13%)

Query: 30  SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
           SATH++    KQ H+++L LG   + F+ TKLI A +  G  T ++ VF+ +    ++ +
Sbjct: 30  SATHKAQ--LKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPW 87

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N++I GY +N+   +AL ++SNM  + VSPD FT   + K    +  L +G  +H    +
Sbjct: 88  NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147

Query: 150 IGFVVDVILANSLMSM---------------------------------YVKCGKFSECL 176
           +GF  DV + N L+++                                 Y + G+  E L
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207

Query: 177 NLFDEMPQRNVG-SWNVRISG----------------HASSGDFSL-------------- 205
            +F  M + +V   W   +S                 HAS     L              
Sbjct: 208 EIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267

Query: 206 -----VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                V  ++ +FD+MK  N+  W AMI+GY +NG   EA+ +F EM  KD + P+ +S+
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD-VRPDTISI 326

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            S +  C+ +  L   + ++ +  R +   DV + +ALIDM++KCGS++ AR VF D + 
Sbjct: 327 TSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVF-DRTL 385

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           ++D + WS+++ GYGLHG+  EA+ LY  M   G  P+ +T +G+L AC  SG++ EG  
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            +N ++  ++I P  +  ACV+D+LGRAG LD+A + IK MPV+P  ++WGAL+SA   H
Sbjct: 446 FFN-LMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
            + E+ + A + L  ++P N  +YV LSNLYA++R WD VAE+R  MK++GL K  GCSW
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564

Query: 501 ISIHGKTHCFSVADKAHP 518
           + + G+   F V DK+HP
Sbjct: 565 VEVRGRLEAFRVGDKSHP 582


>gi|242043810|ref|XP_002459776.1| hypothetical protein SORBIDRAFT_02g010240 [Sorghum bicolor]
 gi|241923153|gb|EER96297.1| hypothetical protein SORBIDRAFT_02g010240 [Sorghum bicolor]
          Length = 506

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 182/465 (39%), Positives = 284/465 (61%), Gaps = 45/465 (9%)

Query: 43  HSQILSLGHI-SNPFVSTKLITAYALCGQPTQ--SQLVFNSIQHKDVYLYNSLINGYVKN 99
           H+  L LG + ++P ++  L+  Y     P    ++ +F+ +  +    YN+LI+    +
Sbjct: 80  HALALRLGLLHADPVLANSLLRLYLRPPVPCPGLARRLFDEMPARTASSYNTLIS---HS 136

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV--DVI 157
           H  ++   +   M     +PD FT++ +  +    +    G  +H  +++ G     D  
Sbjct: 137 HSPDDVWGIVRRMVADECAPDRFTVSAVLPVCTSAR---WGRELHCYAVRDGMCREDDFH 193

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           +++ L+SMY + G                          H  S        +R VF++M+
Sbjct: 194 VSSGLVSMYCRVG--------------------------HPDS--------ARTVFNRME 219

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
           RRNV +WTAM+ GY++NG  ++A+  F  M L D I PN+++L++VL    +L GL+  K
Sbjct: 220 RRNVVSWTAMVGGYMENGMFEDAVDCFRAMWLVDAIPPNRIALITVLSAIEALSGLAEAK 279

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           Q+HGF +R  ++ +V L NALID Y+KCG+L  ARRVF+D+S+ KD I+W +++ GYG+H
Sbjct: 280 QVHGFVVRMMMHAEVPLNNALIDTYAKCGALHYARRVFDDTSWCKDVISWGAMILGYGIH 339

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G G EAV L+++M+  G KPD I  +GVLSAC RSGL+ +GL+ Y+S++N + + PT E+
Sbjct: 340 GMGVEAVALFDQMLSSGVKPDSIIGLGVLSACCRSGLVLKGLDTYSSMVNDHGVHPTEEM 399

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
           CAC+VD+LGR+G + RA DF+K+M VEP PS+WGAL+ ASV +GN E+QDLA +SL++LE
Sbjct: 400 CACMVDLLGRSGHVYRAFDFVKSMSVEPGPSVWGALLDASVKYGNKEIQDLASRSLLRLE 459

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
              PSN V++SNL ASS RW+ V ++R  +    LKK  GCSW++
Sbjct: 460 QGKPSNLVAVSNLNASSERWNIVEQVRDTINQGSLKKRTGCSWVN 504


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 178/476 (37%), Positives = 283/476 (59%), Gaps = 15/476 (3%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++  Y    +   ++ +F+ +  +D   +N++I+GY +N    EA  LF        SP 
Sbjct: 129 MMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE------SPV 182

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-VVDVILANSLMSMYVKCGKFSECLNLF 179
                  + +SG +++   GML     +  G    + +  N++++ YV+C +  +   LF
Sbjct: 183 RDVFTWTAMVSGYVQN---GMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELF 239

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           + MP +NV SWN  I+G+A +GD   + ++R  FD+M +R+  +W A+I GY Q+G  +E
Sbjct: 240 EAMPCQNVSSWNTMITGYAQNGD---IAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 296

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           AL LF+EM+ +D    N+ +  S L TC+ +  L  GKQ+HG  ++  L     + NAL+
Sbjct: 297 ALHLFVEMK-RDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALL 355

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
            MY KCG++D A  VFE     K+ ++W+++++GY  HG G EA++L+  M   G  PD 
Sbjct: 356 VMYCKCGNIDDAYIVFEGIE-EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDD 414

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           +T+VGVLSAC  +GL+++G E + S+   Y I   ++   C++D+LGRAG+LD A + +K
Sbjct: 415 VTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMK 474

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            MP EP  + WGAL+ AS +HGN+E+ + A K + ++EP+N   YV LSNLYA+S RW  
Sbjct: 475 NMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGD 534

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           V  +R  M+DRG+KK PG SW+ +  K H F+V D  HP    IY  L++L L M+
Sbjct: 535 VGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMK 590



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 190/381 (49%), Gaps = 25/381 (6%)

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           ++L+F+ +  +DV  +N++++GY +N    EA E+F  M   N    +  LA   + +G 
Sbjct: 49  ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQ-NGR 107

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           I+D            K  +  ++I  N +M  YVK  +  +   +FD MP+R+  SWN  
Sbjct: 108 IEDAR-----RLFESKADW--ELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTM 160

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           ISG+A +G+   ++ ++R+F++   R+V+ WTAM++GYVQNG LDEA  +F  M      
Sbjct: 161 ISGYAQNGE---LLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP----- 212

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           E N VS  +++        +   +++           +VS  N +I  Y++ G +  AR 
Sbjct: 213 EKNSVSWNAIIAGYVQCKRMDQAREL----FEAMPCQNVSSWNTMITGYAQNGDIAQARN 268

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
            F D    +D+I+W++I++GY   G G EA+ L+ +M   G + +  T    LS C    
Sbjct: 269 FF-DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIA 327

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGA 432
            +  G +++  V+    ++    +   ++ M  + G +D A  +I    +E    + W  
Sbjct: 328 ALELGKQVHGRVVKA-GLESGCYVGNALLVMYCKCGNIDDA--YIVFEGIEEKEVVSWNT 384

Query: 433 LVSASVMHGNSEMQDLAYKSL 453
           +++    HG  +   + ++S+
Sbjct: 385 MIAGYARHGFGKEALMLFESM 405



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 160/383 (41%), Gaps = 60/383 (15%)

Query: 2   ILSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           +L  AR  F  +  +N  S  A +  ++Q     ++ +L +    Q +S           
Sbjct: 200 MLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVS--------SWN 251

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            +IT YA  G   Q++  F+ +  +D   + ++I GY ++    EAL LF  M       
Sbjct: 252 TMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERL 311

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +  T  +      EI  L +G  +HG  +K G      + N+L+ MY KCG   +   +F
Sbjct: 312 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVF 371

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           + + ++ V SWN                                   MI GY ++G   E
Sbjct: 372 EGIEEKEVVSWNT----------------------------------MIAGYARHGFGKE 397

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL--SGGKQIHGFAIRKELNHDVSLCNA 297
           AL+LF  M+ K  I P+ V++V VL  CS   GL   G +  +       +  +      
Sbjct: 398 ALMLFESMK-KTGILPDDVTMVGVLSACSH-TGLVDKGTEYFYSMTQDYGITANSKHYTC 455

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHEAVLLYNKMVCLG 354
           +ID+  + G LD A+ + ++  F  DA TW +++    +HG    G +A  +  +M    
Sbjct: 456 MIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM---- 511

Query: 355 SKPD----IITIVGVLSACGRSG 373
            +PD     + +  + +A GR G
Sbjct: 512 -EPDNSGMYVLLSNLYAASGRWG 533



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 106/234 (45%), Gaps = 4/234 (1%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           +T    L   A   +L+L KQ H +++  G  S  +V   L+  Y  CG    + +VF  
Sbjct: 314 STFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEG 373

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           I+ K+V  +N++I GY ++    EAL LF +M  + + PDD T+  +         ++ G
Sbjct: 374 IEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKG 433

Query: 141 M-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHA 198
               + ++   G   +      ++ +  + G+  +  NL   MP + +  +W   +    
Sbjct: 434 TEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASR 493

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
             G+  L  ++ ++  +M+  N   +  + N Y  +G   +  V  + ++++DR
Sbjct: 494 IHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGD--VGRMRLRMRDR 545



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 35/207 (16%)

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
           +L  AR +F D    +D ++W++++SGY  +G   EA  ++++M C  S    I+  G+L
Sbjct: 45  NLRAARLLF-DQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS----ISWNGML 99

Query: 367 SACGRSGLINEGLEIY-----------NSVINTY--------------RIKPTTEIC-AC 400
           +A  ++G I +   ++           N ++  Y              R+    E+    
Sbjct: 100 AAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT 159

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           ++    + G+L  A    +  PV    + W A+VS  V +G   M D A +    +  +N
Sbjct: 160 MISGYAQNGELLEAQRLFEESPVRDVFT-WTAMVSGYVQNG---MLDEARRVFDGMPEKN 215

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMM 487
             ++ ++   Y   +R D   EL   M
Sbjct: 216 SVSWNAIIAGYVQCKRMDQARELFEAM 242


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/520 (34%), Positives = 305/520 (58%), Gaps = 11/520 (2%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQP 71
           + S  YTS+     L   A   SL   KQ H++++ SL  I +P+V++ LI  YA CG  
Sbjct: 268 LDSTTYTSS-----LTACARLFSLGWGKQLHAKVIRSLPQI-DPYVASALIELYAKCGSF 321

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
            +++ VFNS+Q ++   +  LI G ++    ++++ELF+ M    ++ D F LAT+    
Sbjct: 322 KEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
               DL +G  +H L +K G    ++++NSL+S+Y KCG       +F  M +R++ SW 
Sbjct: 382 FNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWT 441

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
             I+ ++  G+   ++++R  FD M  RN   W AM+  Y+Q+G  ++ L ++  M  + 
Sbjct: 442 SMITAYSQIGN---IIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 498

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            + P+ V+ V++   C+ +     G QI G  ++  L  +VS+ NA I MYSKCG +  A
Sbjct: 499 DVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEA 558

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
           +++F D    KD ++W+++++GY  HG G +A   ++ M+  G+KPD I+ V VLS C  
Sbjct: 559 QKLF-DLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSH 617

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           SGL+ EG   ++ +   + I P  E  +C+VD+LGRAG L  A D I  MP++P+  +WG
Sbjct: 618 SGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWG 677

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
           AL+SA  +HGN E+ +LA K + +L+  +  +Y+ L+ +Y+ + + D  A++R +M+D+G
Sbjct: 678 ALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKG 737

Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           +KK+PG SW+ +  K H F   D +HP  ++I   +D+L+
Sbjct: 738 IKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELM 777



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 224/501 (44%), Gaps = 46/501 (9%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK-- 60
           L+ AR     + +    SA    FLQ +  H  L     S ++ L    I  P V T   
Sbjct: 20  LAGARALHGRLVTVGLASAV---FLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNI 76

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS-P 119
           ++  YA  G  + ++ +F+ +  +DV  +N+L++GY +     + LE F +M+ S  S P
Sbjct: 77  MMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLP 136

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           + FT   + K  G +    +   + GL  K  F  D  +  +L+ M+V+CG       LF
Sbjct: 137 NAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLF 196

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
            ++ +  +   N  ++G+A       +  +   F+ M  R+V +W  MI    Q+G + E
Sbjct: 197 SQIERPTIFCRNSMLAGYAK---LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVRE 253

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           AL L +EM  K  +  +  +  S L  C+ L  L  GKQ+H   IR     D  + +ALI
Sbjct: 254 ALGLVVEMHRKG-VRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALI 312

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           ++Y+KCGS   A+RVF +S  ++++++W+ ++ G   +    ++V L+N+M       D 
Sbjct: 313 ELYAKCGSFKEAKRVF-NSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQ 371

Query: 360 ITIVGVLSAC--------GR--------SGLINEGLEIYNSVINTYRIKPTTEICACV-- 401
             +  ++S C        GR        SG  N  + + NS+I+ Y      +    V  
Sbjct: 372 FALATLISGCFNRMDLCLGRQLHSLCLKSGH-NRAIVVSNSLISLYAKCGDLQNAEFVFS 430

Query: 402 -------------VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
                        +    + G + +A +F   M    + + W A++ A + HG  E    
Sbjct: 431 SMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAIT-WNAMLGAYIQHGAEEDGLK 489

Query: 449 AYKSLIQLEPENPS--NYVSL 467
            Y +++  +   P    YV+L
Sbjct: 490 MYSAMLSQKDVTPDWVTYVTL 510



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 10/202 (4%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +L   L +C S   L+G + +HG  +   L   V L N L+  Y  CG+L  ARR+    
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
               + IT + +++GY   G   +A  L+++M     + D+ +   ++S   ++    +G
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRM----PRRDVASWNTLMSGYFQARRFLDG 121

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA---LDFIKTMPVEPSPSIWGALVS 435
           LE + S+  +    P      CV+   G  G  + A   L           P +  ALV 
Sbjct: 122 LETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVD 181

Query: 436 ASVMHGNSEMQDLAYKSLIQLE 457
             V  G     D A +   Q+E
Sbjct: 182 MFVRCG---YVDFASRLFSQIE 200


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 203/578 (35%), Positives = 307/578 (53%), Gaps = 50/578 (8%)

Query: 14  TSRNYTSATVQHFLQVSATHRS---LKLTKQSHSQILSLGHISNP---FVSTKLITAYAL 67
            SR++   + +  L++ A  R+   L   + +H+++L L H S+P     + KLI AYA 
Sbjct: 3   ASRSHLPTSGESLLRLLAACRAPAHLPSLRAAHARLLVLLHPSHPSAAHANVKLIQAYAA 62

Query: 68  CGQPTQSQLVFNSIQ-----HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS--PD 120
           C     +  V  S             +N LI     +  H +AL LF++M     +  PD
Sbjct: 63  CSALPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPD 122

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            +T     K     KDL +G+ IH    K+    +V +A+S +SMY +CG+  +   +FD
Sbjct: 123 HYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFD 182

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRS------------------------------- 209
            MP R+V SWN  I+G A  G F   +                                 
Sbjct: 183 GMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDD 242

Query: 210 ----RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
               RRVFD M+ + + +W AM+  Y  N    +A+ LF+ M+ KD +EP+ ++L +VLP
Sbjct: 243 IRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLME-KDEVEPDSITLATVLP 301

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C  L   S GK+IH    RK +  ++ L NAL+DMY+ CG L  AR +F+  S  +D I
Sbjct: 302 PCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMS-ARDVI 360

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W+SI+S YG HG G EAV L+ KM+  G +PD I  V VL+AC  +GL+ +G   ++S+
Sbjct: 361 SWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSM 420

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
            + Y I P  E   C+VD+LGRAG ++ A DFI TM +EP+  +WGAL+ A  +H N ++
Sbjct: 421 TSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDI 480

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
             +A  +L  L PE    YV LSN+YA + RW  V  +R++M ++G+KK PG S + +  
Sbjct: 481 GLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGD 540

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           + H F + D+ HP S  IY  LD+L+  +RG   +P +
Sbjct: 541 QVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEV 578


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 182/515 (35%), Positives = 298/515 (57%), Gaps = 31/515 (6%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N    T ++  Y    + + ++ +FN + +K+V  +N++I+GY +N   + A+ LF  M 
Sbjct: 114 NVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMP 173

Query: 114 YSNVSPDDFTLATISKLSGEIKD-------------LNVGMLIHGLSIKIGFV------- 153
             NV   +  ++ +++  G I++             ++   +I GLS K G +       
Sbjct: 174 ERNVVSWNTVMSMLAQ-CGRIEEARRLFDRMPERDVISWTAMIAGLS-KNGRIDEARLLF 231

Query: 154 -----VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
                 +V+  N++++ Y +  +  E L+LF+ MP+R++ SWN  I+G   +GD     R
Sbjct: 232 DRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLR---R 288

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           +R++F++M ++NV +WT MI G VQ G+ +EAL +F  M   +  +PN+ + VSVL  CS
Sbjct: 289 ARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACS 348

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAITW 327
           +L GL  G+Q+H    +        + +ALI+MYSKCG L  AR++F+D  +  +D ++W
Sbjct: 349 NLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSW 408

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           + I++ Y  HG G EA+  + +M   G KPD +T VG+LSAC  +GL+ EGL+ ++ ++ 
Sbjct: 409 NGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVK 468

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
              I    +  AC+VD+ GRAG+L  A  FI+ +  +PS  +WGAL++   +H N ++  
Sbjct: 469 DRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGK 528

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A K L+++EPEN   Y+ LSN+YAS+ +W   A +R  MKD+GLKK PGCSWI +  + 
Sbjct: 529 QAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRV 588

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           H F V DK+H  S  IY +L DL   M+ A   P+
Sbjct: 589 HVFVVGDKSHSQSKLIYSLLRDLHSKMKKAGYEPN 623



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 164/330 (49%), Gaps = 34/330 (10%)

Query: 152 FVVD--VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           F VD  V   N +++   K G+  E   LFDEM + +V +W   ISG+   G   ++  +
Sbjct: 46  FTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCG---MIEEA 102

Query: 210 RRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           RR+FD++  ++NV  WTAM+ GY+++  + +A  LF EM       PNK    +V+   +
Sbjct: 103 RRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEM-------PNK----NVVSWNT 151

Query: 269 SLIGLSGGKQIHG--FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
            + G +   +I    +   K    +V   N ++ M ++CG ++ ARR+F D    +D I+
Sbjct: 152 MIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLF-DRMPERDVIS 210

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+++++G   +G+  EA LL+++M     + ++++   +++   ++  ++E L+++  + 
Sbjct: 211 WTAMIAGLSKNGRIDEARLLFDRM----PERNVVSWNAMITGYAQNLRLDEALDLFERM- 265

Query: 387 NTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
                 P  ++ +   ++  L + G L RA      MP +   S W  +++  V  G SE
Sbjct: 266 ------PERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVIS-WTTMITGCVQEGESE 318

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
                +  ++      P+    +S L A S
Sbjct: 319 EALKIFSRMLSTNGAKPNQGTFVSVLGACS 348



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 116/277 (41%), Gaps = 31/277 (11%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYV 97
           +Q H  I    +  + FV + LI  Y+ CG+   ++ +F+      +D+  +N +I  Y 
Sbjct: 357 QQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYA 416

Query: 98  KNHGH-NEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
            +HG+  EA+  F  M  S   PDD T +  +S  S      + G++  GL      V D
Sbjct: 417 -HHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACS------HAGLVEEGLKYFDELVKD 469

Query: 156 -VILANS-----LMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVR 208
             IL        L+ +  + G+  E     + +  + +   W   ++G     +  +  +
Sbjct: 470 RSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQ 529

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           + +   +++  N   +  + N Y   G   EA  + L+M+ K          +   P CS
Sbjct: 530 AAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKG---------LKKQPGCS 580

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALI-DMYSK 304
               +  G ++H F +  + +    L  +L+ D++SK
Sbjct: 581 ---WIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSK 614


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 179/488 (36%), Positives = 291/488 (59%), Gaps = 6/488 (1%)

Query: 46  ILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA 105
           +LSLG  ++ FV    +   A+C    +++ +F+    +D+  +N+LI GYV+     EA
Sbjct: 146 VLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREA 205

Query: 106 LELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           LE+F  M     V+PD+ T+  +   S +++DL +G  +HG     G    V L N +M 
Sbjct: 206 LEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMD 265

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MY+KCG      ++F+ + ++ + SW   I G+A    F L+  +R+VFD+M  R+V+ W
Sbjct: 266 MYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQ---FGLMDDARKVFDEMPERDVFPW 322

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            A++ GYVQ     EAL LF +MQ +  +EP+ +++V++L  CS L  L  G  +H +  
Sbjct: 323 NALMTGYVQCKRGKEALRLFHDMQ-EAMVEPDDITMVNLLSACSQLGALEMGMWVHHYID 381

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R+ ++  V L   L+DMYSKCG+++ A RVF++    K+A+TW++++SG   HG    A+
Sbjct: 382 RRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIP-EKNALTWTAMISGLANHGHADVAI 440

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
             + +M+ LG +PD IT +GVLSAC  +GL+ EG E ++ +++ Y ++   +  +C+VD+
Sbjct: 441 KYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDL 500

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           LGRAG LD A   + TMP+EP   +WGAL  A  MHGN  + + A   L++L+P +   Y
Sbjct: 501 LGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIY 560

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           V L+N+YA +       ++R MM+  G++K PGCS I ++G  H F V DK+H    +IY
Sbjct: 561 VLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHTDIAAIY 620

Query: 525 EMLDDLIL 532
           + L ++ L
Sbjct: 621 DCLHEITL 628



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 170/381 (44%), Gaps = 67/381 (17%)

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           L L+ ++  S   PD  T   + K    +++ N G  + G  + +GF  DV + N+ M  
Sbjct: 106 LPLYCSLLRS-ARPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHF 164

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
              C   +E   LFD    R++ SWN  I                               
Sbjct: 165 LAVCSSMAEARKLFDGSHVRDLVSWNTLI------------------------------- 193

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
               GYV+ G   EAL +F  M     + P++V+++ V+   + L  L  G+++HG+   
Sbjct: 194 ---GGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVES 250

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFE----------------------------- 316
             +   V L N ++DMY KCG L+ A+ VFE                             
Sbjct: 251 HGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKV 310

Query: 317 -DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D    +D   W+++++GY    +G EA+ L++ M     +PD IT+V +LSAC + G +
Sbjct: 311 FDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGAL 370

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
             G+ +++  I+  R+  +  +   +VDM  + G +++A+   K +P E +   W A++S
Sbjct: 371 EMGMWVHH-YIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIP-EKNALTWTAMIS 428

Query: 436 ASVMHGNSEMQDLAYKSLIQL 456
               HG++++    ++ +I+L
Sbjct: 429 GLANHGHADVAIKYFQRMIEL 449



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 137/341 (40%), Gaps = 67/341 (19%)

Query: 30  SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK----- 84
           SA  R L+L ++ H  + S G      +   ++  Y  CG   +++ VF  I  K     
Sbjct: 232 SAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSW 291

Query: 85  --------------------------DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
                                     DV+ +N+L+ GYV+     EAL LF +M  + V 
Sbjct: 292 TTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVE 351

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           PDD T+  +     ++  L +GM +H    +    + V+L  +L+ MY KCG   + + +
Sbjct: 352 PDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRV 411

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F E+P++N  +W   ISG A+ G   + ++                              
Sbjct: 412 FKEIPEKNALTWTAMISGLANHGHADVAIK------------------------------ 441

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNA 297
                + +  ++  ++P++++ + VL  C     +  G++     + K  L   +   + 
Sbjct: 442 -----YFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSC 496

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           ++D+  + G LD A  +        DA+ W ++     +HG
Sbjct: 497 MVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHG 537


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 180/508 (35%), Positives = 286/508 (56%), Gaps = 12/508 (2%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A  +  +  +Q H  +    H  +  + + L+  YA C +P  ++ VF+++  ++V
Sbjct: 158 LSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNV 217

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NSLI  Y +N    EAL LF  M  +  SPD+ TL+++      +     G  +H  
Sbjct: 218 VSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAH 277

Query: 147 SIKIGFVVD-VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
            +K   + D ++L N+L+ MY KCG+  E   +FD MP R++ S    ++G+A S +   
Sbjct: 278 MVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSAN--- 334

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  ++ VF QM  +NV AW  +I  Y QNG+ +EA+ LF++++ +D I P   +  +VL 
Sbjct: 335 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLK-RDSIWPTHYTYGNVLN 393

Query: 266 TCSSLIGLSGGKQIH------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            C ++  L  G+Q H      GF        DV + N+L+DMY K GS+D   +VFE  +
Sbjct: 394 ACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMA 453

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D ++W++++ GY  +G+  +A+ L+ +M+C    PD +T++GVLSACG SGL++EG 
Sbjct: 454 -ARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGR 512

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             ++S+   + I P+ +   C+VD+LGRAG L  A + I  MP+EP   +W +L+ A  +
Sbjct: 513 RYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRL 572

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H N E+ +     L +L+P+N   YV LSN+YA   +W  V  +R  MKDRG+ K PGCS
Sbjct: 573 HKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCS 632

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEML 527
           WI I  K + F   DK HPC   I+  L
Sbjct: 633 WIEIGRKMNVFLARDKRHPCRNEIHNTL 660



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 212/490 (43%), Gaps = 88/490 (17%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN-HGHN-EALELF 109
           + N F    L++AYA  G+P +++ +F +I   D   YN+++    ++  GH  +AL   
Sbjct: 80  LRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFL 139

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
           + M+  +   + ++ A+        KD   G  +HGL  +     DV + ++L+ MY KC
Sbjct: 140 AAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKC 199

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
            +  +   +FD MP+RNV SWN                                  ++I 
Sbjct: 200 ERPEDARRVFDAMPERNVVSWN----------------------------------SLIT 225

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-KEL 288
            Y QNG + EAL+LF+EM +     P++V+L SV+  C+ L     G+Q+H   ++   L
Sbjct: 226 CYEQNGPVGEALMLFVEM-MAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRL 284

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVF------------------------EDSS----- 319
             D+ L NAL+DMY+KCG    AR +F                        ED+      
Sbjct: 285 RDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQ 344

Query: 320 -FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              K+ I W+ +++ Y  +G+  EA+ L+ ++      P   T   VL+ACG    +  G
Sbjct: 345 MVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLG 404

Query: 379 LEIYNSVINT---YRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            + +  V+     +   P +++     +VDM  + G +D      + M    + S W A+
Sbjct: 405 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVS-WNAM 463

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL--------SNLYASSRRWDAVAELRT 485
           +     +G ++     ++ ++    ENP +   +        S L    RR+       +
Sbjct: 464 IVGYAQNGRAKDALHLFERML-CSNENPDSVTMIGVLSACGHSGLVDEGRRY-----FHS 517

Query: 486 MMKDRGLKKS 495
           M +D G+  S
Sbjct: 518 MTEDHGITPS 527



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 156/322 (48%), Gaps = 14/322 (4%)

Query: 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
           H+   EL +++  S  SP    L +   LSG           H   +K     +  L N+
Sbjct: 7   HHHGQELVAHLRAS--SPLADLLRSAPNLSG-------ARAAHARILKSPVAGETFLLNT 57

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+S Y + G+  +   +FDE+P RN  S+N  +S +A  G       +R +F+ +   + 
Sbjct: 58  LVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPD---EARALFEAIPDPDQ 114

Query: 222 YAWTAMINGYVQNGDLDEALVL-FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
            ++ A++    ++G    A  L FL     D    N  S  S L  C++      G+Q+H
Sbjct: 115 CSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVH 174

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
           G   R     DV + +AL+DMY+KC   + ARRVF D+   ++ ++W+S+++ Y  +G  
Sbjct: 175 GLVARSPHADDVHIRSALVDMYAKCERPEDARRVF-DAMPERNVVSWNSLITCYEQNGPV 233

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            EA++L+ +M+  G  PD +T+  V+SAC       EG +++  ++   R++    +   
Sbjct: 234 GEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNA 293

Query: 401 VVDMLGRAGQLDRALDFIKTMP 422
           +VDM  + G+   A     +MP
Sbjct: 294 LVDMYAKCGRTWEARCIFDSMP 315


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 179/520 (34%), Positives = 305/520 (58%), Gaps = 11/520 (2%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQP 71
           + S  YTS+     L   A   SL   KQ H++++ SL  I +P+V++ LI  YA CG  
Sbjct: 258 LDSTTYTSS-----LTACARLFSLGWGKQLHAKVIRSLPQI-DPYVASALIELYAKCGSF 311

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
            +++ VFNS+Q ++   +  LI G ++    ++++ELF+ M    ++ D F LAT+    
Sbjct: 312 KEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 371

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
               DL +G  +H L +K G    ++++NSL+S+Y KCG       +F  M +R++ SW 
Sbjct: 372 FNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWT 431

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
             I+ ++  G+   ++++R  FD M  RN   W AM+  Y+Q+G  ++ L ++  M  + 
Sbjct: 432 SMITAYSQIGN---IIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 488

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            + P+ V+ V++   C+ +     G QI G  ++  L  +VS+ NA I MYSKCG +  A
Sbjct: 489 DVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEA 548

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
           +++F D    KD ++W+++++GY  HG G +A   ++ M+  G+KPD I+ V VLS C  
Sbjct: 549 QKLF-DLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSH 607

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           SGL+ EG   ++ +   + I P  E  +C+VD+LGRAG L  A D I  MP++P+  +WG
Sbjct: 608 SGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWG 667

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
           AL+SA  +HGN E+ +LA K + +L+  +  +Y+ L+ +Y+ + + D  A++R +M+D+G
Sbjct: 668 ALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKG 727

Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           +KK+PG SW+ +  K H F   D +HP  ++I   +D+L+
Sbjct: 728 IKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELM 767



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 220/483 (45%), Gaps = 51/483 (10%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ-LVFNSIQHKD 85
           L+   +  +L   +  H +++++G  S  F+   L+ AY  CG  + ++ L+   I+  +
Sbjct: 27  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 86

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE--------IKDL 137
           V  +N ++NGY K    ++A ELF  M   +V+  +  ++  S+ +G          ++L
Sbjct: 87  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCREL 146

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
              +L  GL  K  F  D  +  +L+ M+V+CG       LF ++ +  +   N  ++G+
Sbjct: 147 APQLL--GLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGY 204

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A       +  +   F+ M  R+V +W  MI    Q+G + EAL L +EM  K  +  + 
Sbjct: 205 AK---LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG-VRLDS 260

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            +  S L  C+ L  L  GKQ+H   IR     D  + +ALI++Y+KCGS   A+RVF +
Sbjct: 261 TTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVF-N 319

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC-------- 369
           S  ++++++W+ ++ G   +    ++V L+N+M       D   +  ++S C        
Sbjct: 320 SLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCL 379

Query: 370 GR--------SGLINEGLEIYNSVINTYRIKPTTEICACV---------------VDMLG 406
           GR        SG  N  + + NS+I+ Y      +    V               +    
Sbjct: 380 GRQLHSLCLKSGH-NRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYS 438

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS--NY 464
           + G + +A +F   M    + + W A++ A + HG  E     Y +++  +   P    Y
Sbjct: 439 QIGNIIKAREFFDGMATRNAIT-WNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTY 497

Query: 465 VSL 467
           V+L
Sbjct: 498 VTL 500



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 252 RIEPNKVS--LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
           R+ P+ V+  L   L +C S   L+G + +HG  +   L   V L N L+  Y  CG+L 
Sbjct: 13  RLLPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALS 72

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
            ARR+        + IT + +++GY   G   +A  L+++M
Sbjct: 73  DARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRM 113


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 182/508 (35%), Positives = 284/508 (55%), Gaps = 12/508 (2%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A  + L+  +Q H  +    H  +  + T L+  YA C +P  ++ VF+++  ++V
Sbjct: 158 LSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNV 217

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NSLI  Y +N    EAL LF  M  +   PD+ TL+++      +     G  +H  
Sbjct: 218 VSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAH 277

Query: 147 SIKIGFVVD-VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
            +K   + D ++L N+L+ MY KCG+  E   +FD MP R+V S    ++G+A S +   
Sbjct: 278 MVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSAN--- 334

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  ++ VF QM  +NV AW  +I  Y QNG+ +EA+ LF++++ +D I P   +  +VL 
Sbjct: 335 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLK-RDSIWPTHYTYGNVLN 393

Query: 266 TCSSLIGLSGGKQIH------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            C ++  L  G+Q H      GF        DV + N+L+DMY K GS+D   +VFE  +
Sbjct: 394 ACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMA 453

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D ++W++++ GY  +G+  +A+ L+ +M+C    PD +T++GVLSACG SGL++EG 
Sbjct: 454 -ARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGR 512

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             ++ +   + I P+ +   C+VD+LGRAG L  A + IK MP EP   +W +L+ A  +
Sbjct: 513 RHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRL 572

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H N E+ +     L +L+PEN   YV LSN+YA   +W  V  +R  MKDRG+ K PGCS
Sbjct: 573 HKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCS 632

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEML 527
           WI I  K + F   D  HPC   I+  L
Sbjct: 633 WIEIGSKMNVFLARDNRHPCRNEIHSTL 660



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 194/431 (45%), Gaps = 74/431 (17%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN-HGH-NEALELF 109
           + N F    L++AYA  G+P +++ +F +I   D   YN+++    ++  GH  +AL   
Sbjct: 80  LRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFL 139

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
           + M+  +   + ++ A+        KDL  G  +HGL  +     DV +  +L+ MY KC
Sbjct: 140 AAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKC 199

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
            +  +   +FD MP+RNV SWN                                  ++I 
Sbjct: 200 ERPVDARRVFDAMPERNVVSWN----------------------------------SLIT 225

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-L 288
            Y QNG + EALVLF+EM +     P++V+L SV+  C+ L     G+Q+H   ++++ L
Sbjct: 226 CYEQNGPVGEALVLFVEM-MATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRL 284

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVF------------------------EDSS----- 319
             D+ L NAL+DMY+KCG    AR +F                        ED+      
Sbjct: 285 RDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQ 344

Query: 320 -FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              K+ I W+ +++ Y  +G+  EA+ L+ ++      P   T   VL+ACG   ++  G
Sbjct: 345 MVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLG 404

Query: 379 LEIYNSVINT---YRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            + +  V+     +   P +++     +VDM  + G +D      + M    + S W A+
Sbjct: 405 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVS-WNAM 463

Query: 434 VSASVMHGNSE 444
           +     +G ++
Sbjct: 464 IVGYAQNGRAK 474



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 139/280 (49%), Gaps = 5/280 (1%)

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HG  +K     +  L N+L+S Y + G+  E   +FD +P RN  S+N  +S +A  G  
Sbjct: 40  HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL-FLEMQLKDRIEPNKVSLVS 262
                +R +F+ +   +  ++ A++    ++G       L FL     D    N  S  S
Sbjct: 100 D---EARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFAS 156

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L  C++   L  G+Q+HG   R     DV +  AL+DMY+KC     ARRVF D+   +
Sbjct: 157 ALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVF-DAMPER 215

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           + ++W+S+++ Y  +G   EA++L+ +M+  G  PD +T+  V+SAC       EG +++
Sbjct: 216 NVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVH 275

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
             ++   R++    +   +VDM  + G+   A     +MP
Sbjct: 276 AHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 15/146 (10%)

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L G +  HG  ++  +  +  L N L+  Y++ G L  ARRVF+     ++  ++++++S
Sbjct: 33  LPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPL-RNTFSYNALLS 91

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG--------LEIYNS 384
            Y   G+  EA  L+  +      PD  +   V++A  R G  + G        +   + 
Sbjct: 92  AYARLGRPDEARALFEAI----PDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDF 147

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQ 410
           V+N Y        CA   D+  R G+
Sbjct: 148 VLNAYSFASALSACAAEKDL--RTGE 171


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 182/514 (35%), Positives = 287/514 (55%), Gaps = 12/514 (2%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q HS I     +S+ ++ + L+  Y+ CG    +Q VF+ +  ++V  +NSLI  Y +N 
Sbjct: 173 QIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNG 232

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILA 159
              EAL++F  M  S V PD+ TLA++      +  + VG  +H   +K+  +  D+IL+
Sbjct: 233 PAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILS 292

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+ + MY KC +  E   +FD MP RNV +    +SG+A +        +R +F +M  R
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAAS---TKAARLMFTKMAER 349

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV +W A+I GY QNG+ +EAL LF  ++ ++ + P   +  ++L  C+ L  L  G Q 
Sbjct: 350 NVVSWNALIAGYTQNGENEEALSLFCLLK-RESVCPTHYTFANILKACADLADLHLGMQA 408

Query: 280 H------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           H      GF  +     D+ + N+LIDMY KCG ++    VF      +D ++W++++ G
Sbjct: 409 HVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR-KMMERDCVSWNAMIIG 467

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           +  +G G+EA+ L+ +M+  G KPD IT++GVLSACG +G + EG   ++S+   + + P
Sbjct: 468 FAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAP 527

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             +   C+VD+LGRAG L+ A   I+ MPV+P   IWG+L++A  +H N  +     + L
Sbjct: 528 LRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKL 587

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
            ++E  N   YV LSN+YA   +W     +R +M+  G+ K PGCSWI I G  H F V 
Sbjct: 588 FEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVK 647

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
           DK+HP    I+ +LD LI  MR        G ++
Sbjct: 648 DKSHPRKKQIHSLLDILIAEMRQKQDHAETGSLS 681



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 150/281 (53%), Gaps = 5/281 (1%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H   IK GF  +V + N L+  Y KCG   +   LFD+MPQRNV +WN  ++G    G 
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLG- 100

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              +  +  +F  M  R+   W +M++G+ Q+   +EAL  F  M  K+    N+ +  S
Sbjct: 101 --FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMH-KEGFVLNEYTFAS 157

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L  CS L  ++ G QIH    +     DV + +AL+DMYSKCG+++ A++VF D   ++
Sbjct: 158 GLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVF-DEMGDR 216

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           + ++W+S+++ Y  +G   EA+ ++  M+    +PD +T+  V+SAC     I  G E++
Sbjct: 217 NVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVH 276

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
             V+   +++    +    VDM  +  ++  A     +MP+
Sbjct: 277 ARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 189/400 (47%), Gaps = 78/400 (19%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+ ++  G  +  F+  +LI AYA CG     + +F+ +  ++V+ +NS++ G  K    
Sbjct: 43  HASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFL 102

Query: 103 NEALELFSNM--------------------------YYSNVSPDDFTLATISKLSG---- 132
           +EA  LF +M                          Y++ +  + F L   +  SG    
Sbjct: 103 DEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSAC 162

Query: 133 -EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
             + D+N G+ IH L  K   + DV + ++L+ MY KCG  ++   +FDEM  RNV SWN
Sbjct: 163 SGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWN 222

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                                             ++I  Y QNG   EAL +F ++ L+ 
Sbjct: 223 ----------------------------------SLITCYEQNGPAVEALKVF-QVMLES 247

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDC 310
            +EP++V+L SV+  C+SL  +  G+++H   ++  +L +D+ L NA +DMY+KC  +  
Sbjct: 248 WVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKE 307

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR +F DS   ++ I  +S+VSGY +      A L++ KM    ++ ++++   +++   
Sbjct: 308 ARFIF-DSMPIRNVIAETSMVSGYAMAASTKAARLMFTKM----AERNVVSWNALIAGYT 362

Query: 371 RSGLINEGLEIY-----NSVINT-YRIKPTTEICACVVDM 404
           ++G   E L ++      SV  T Y      + CA + D+
Sbjct: 363 QNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADL 402


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 177/512 (34%), Positives = 292/512 (57%), Gaps = 9/512 (1%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           + LK  K  H   +  G + + FV T L+  YA C    ++Q VF+ + H++V  +NSL 
Sbjct: 357 KDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLS 416

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           + YV      + L +F  M  + V PD  T+ +I     +++DL  G +IHG +++ G V
Sbjct: 417 SCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMV 476

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV + N+L+S+Y KC    E   +FD +P R V SWN  ++ + ++ ++    +   +F
Sbjct: 477 EDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYE---KGLYMF 533

Query: 214 DQMKRRNVYA----WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
            QM R  V A    W+ +I G V+N  ++EA+ +F +MQ     +P++ ++ S+L  CS 
Sbjct: 534 SQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMG-FKPDETTIYSILRACSL 592

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
              L  GK+IH +  R   + D++  NAL+DMY+KCG L  +R VF+     KD  +W++
Sbjct: 593 SECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPI-KDVFSWNT 651

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++   G+HG G EA+ L+ KM+    KPD  T   VLSAC  S L+ EG++I+NS+   +
Sbjct: 652 MIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDH 711

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            ++P  E   CVVD+  RAG L+ A  FI+ MP+EP+   W A ++   ++ N E+  ++
Sbjct: 712 LVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKIS 771

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            K L +++P   +NYV+L N+  +++ W   +++R +MK+RG+ K+PGCSW  +  + H 
Sbjct: 772 AKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHT 831

Query: 510 FSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           F   DK++  S  IY  LD+L   ++ A   P
Sbjct: 832 FVAGDKSNMESDKIYNFLDELFAKIKAAGYKP 863



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 190/371 (51%), Gaps = 43/371 (11%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   +  + LK  K+ H  ++  G + + FVS+  +  YA C    ++Q VF+ +
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLM 202

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            H+DV  +NSL + YV      + L +F  M    V PD  T++ I     +++DL  G 
Sbjct: 203 PHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGK 262

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IHG ++K G V +V ++N+L+++Y  C                                
Sbjct: 263 AIHGFALKHGMVENVFVSNALVNLYESC-------------------------------- 290

Query: 202 DFSLVVR-SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
              L VR ++ VFD M  RNV  W ++ + YV  G   + L +F EM L + ++P+ +++
Sbjct: 291 ---LCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGL-NGVKPDPMAM 346

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            S+LP CS L  L  GK IHGFA++  +  DV +C AL+++Y+ C  +  A+ VF D   
Sbjct: 347 SSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVF-DLMP 405

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG-----RSGLI 375
           +++ +TW+S+ S Y   G   + + ++ +MV  G KPD++T++ +L AC      +SG +
Sbjct: 406 HRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKV 465

Query: 376 NEGLEIYNSVI 386
             G  + + ++
Sbjct: 466 IHGFAVRHGMV 476



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 146/315 (46%), Gaps = 59/315 (18%)

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           NEA++++++     + PD      ++K     +D       H  + + G + DV + N+ 
Sbjct: 22  NEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAF 81

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           +  Y KC                                    V  +RRVFD +  R+V 
Sbjct: 82  IHAYGKC----------------------------------KCVEGARRVFDDLVARDVV 107

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W ++   YV  G   + L +F +M L ++++ N +++ S+LP CS L  L  GK+IHGF
Sbjct: 108 TWNSLSACYVNCGFPQQGLNVFRKMGL-NKVKANPLTVSSILPGCSDLQDLKSGKEIHGF 166

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            +R  +  DV + +A ++ Y+KC  +  A+ VF D   ++D +TW+S+ S Y   G   +
Sbjct: 167 VVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVF-DLMPHRDVVTWNSLSSCYVNCGFPQK 225

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACG----------------RSGLINEGLEIYNSVI 386
            + ++ +MV  G KPD +T+  +LSAC                 + G++ E + + N+++
Sbjct: 226 GLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMV-ENVFVSNALV 284

Query: 387 NTYRIKPTTEICACV 401
           N Y      E C CV
Sbjct: 285 NLY------ESCLCV 293



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 136/348 (39%), Gaps = 71/348 (20%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   +  + LK  K  H   +  G + + FV   L++ YA C    ++Q+VF+ I
Sbjct: 446 TMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLI 505

Query: 82  QHKDVYLYNSLINGY-----------------------------------VKNHGHNEAL 106
            H++V  +N ++  Y                                   VKN    EA+
Sbjct: 506 PHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAM 565

Query: 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
           E+F  M      PD+ T+ +I +     + L +G  IH    +     D+   N+L+ MY
Sbjct: 566 EIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMY 625

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
            KCG  S   N+FD MP ++V SWN  I                                
Sbjct: 626 AKCGGLSLSRNVFDMMPIKDVFSWNTMI-------------------------------- 653

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
             NG   NG   EAL LF +M L   ++P+  +   VL  CS  + +  G QI     R 
Sbjct: 654 FANGMHGNG--KEALSLFEKMLL-SMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRD 710

Query: 287 EL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
            L   +      ++D+YS+ G L+ A    +       AI W + ++G
Sbjct: 711 HLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAG 758



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
           + +G  +EA+ ++   + +  I+P+K   ++V   C++       KQ H  A R  +  D
Sbjct: 16  IPHGLPNEAIKIYTSSRARG-IKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSD 74

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           VS+ NA I  Y KC  ++ ARRVF+D    +D +TW+S+ + Y   G   + + ++ KM 
Sbjct: 75  VSIGNAFIHAYGKCKCVEGARRVFDD-LVARDVVTWNSLSACYVNCGFPQQGLNVFRKMG 133

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
               K + +T+  +L  C     +  G EI+  V+
Sbjct: 134 LNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVV 168


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 187/544 (34%), Positives = 295/544 (54%), Gaps = 37/544 (6%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           + S  N  A  T    T +     LQ     +++K  KQ H+Q+   G   +  ++TKL+
Sbjct: 58  IPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLV 117

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
             Y +C   + ++L+F+ I   +++L+N LI GY  N  +  A++L+  M+   + PD+F
Sbjct: 118 NLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNF 177

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T   + K    +  +  G  IH   ++ G+  DV +  +L+ MY KCG    C       
Sbjct: 178 TFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCG----C------- 226

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
               VGS                   +R VFD++  R+   W +M+  Y QNG  D  L 
Sbjct: 227 ----VGS-------------------AREVFDKILVRDAVLWNSMLAAYSQNGHPDACLS 263

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302
           L  EM L   + P + +LV+ +   +    L  G+++HG + R+E      +  AL+DMY
Sbjct: 264 LCSEMVLTG-LRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMY 322

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362
           +KCGS+  AR +FE     K  ++W+++++GY +HG   EA+ L+ +M  + +KPD IT 
Sbjct: 323 AKCGSVRVARNLFERLGV-KRVVSWNAMITGYAMHGHATEALDLFEEMNRV-AKPDHITF 380

Query: 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
           VGVLSAC   GL+ EG   + ++I  Y+I PT +   C+VD+LG +G+LD A + I  M 
Sbjct: 381 VGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMK 440

Query: 423 VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482
           V P   +WGAL+++  +H N E+ ++A + LI+LEP++  NYV LSN+YA + +W+ VA+
Sbjct: 441 VLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAK 500

Query: 483 LRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           LR +M DR LKKS  CSWI +  K H F   D +HP S  IY  L+ +  +M+ A  SP 
Sbjct: 501 LRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPS 560

Query: 543 LGKM 546
            G +
Sbjct: 561 TGSV 564


>gi|125558137|gb|EAZ03673.1| hypothetical protein OsI_25810 [Oryza sativa Indica Group]
          Length = 514

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 185/464 (39%), Positives = 280/464 (60%), Gaps = 45/464 (9%)

Query: 43  HSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101
           H+  L LG + ++P ++   +  Y     P  ++ +F+ +  +    YN+LI+    +  
Sbjct: 90  HAFSLRLGLLRADPVLANSFLLLYLRAASPGLARRLFDEMPARTASTYNTLIS---HSPP 146

Query: 102 HNEALELFSNMYYSNVSPDDFTLATI-SKLSGEIKDLNVGMLIHGLSIKIGF--VVDVIL 158
             +   +  +M      PD FT+++I      E++    G  +H  ++K G     D  +
Sbjct: 147 GVDVWPVVRHMVEDGCVPDRFTVSSILPACESELR----GRELHCFALKSGMCGAGDFHV 202

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            +SL+SMY + G+                        GHA           RRVFD M++
Sbjct: 203 GSSLVSMYFRVGQ-----------------------PGHA-----------RRVFDGMEQ 228

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           RNV +WTAM+ G+ ++G  ++A+  F  M +   + PN+++L+SVL    +L  L+ GKQ
Sbjct: 229 RNVVSWTAMVGGFTESGMFEDAVDAFRAMWVIGAVLPNRIALISVLSAVEALTDLAAGKQ 288

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HGFA+R  L+ +VSL NALI MY KCG L  AR++F+D  + KD I+W S++ GYGLHG
Sbjct: 289 VHGFAVRMGLSGEVSLNNALIVMYVKCGVLWYARQIFDDGRWCKDVISWCSMIQGYGLHG 348

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           KG EAV L+++M   G KPD IT +GVLSAC R+GL+ +GLEIYNS++  Y + PT E+ 
Sbjct: 349 KGAEAVALFDQMHISGVKPDSITGLGVLSACSRAGLVFKGLEIYNSLVKDYGVHPTEEMS 408

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
           AC+VD+LGR+G +++ALDFIK+M +EP PS+WGAL+ AS++H N E+QDL+ + L++LE 
Sbjct: 409 ACIVDLLGRSGMINQALDFIKSMSIEPGPSVWGALLDASIVHNNKEIQDLSCRYLLRLEE 468

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
            NPSN VS+SNL+A    W+ V  +R  +K   LKK PG SWI+
Sbjct: 469 GNPSNLVSVSNLHAFEGSWNIVEHVRAKIKQGALKKIPGFSWIN 512



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-KDVYLYNSLIN 94
           L   KQ H   + +G      ++  LI  Y  CG    ++ +F+  +  KDV  + S+I 
Sbjct: 283 LAAGKQVHGFAVRMGLSGEVSLNNALIVMYVKCGVLWYARQIFDDGRWCKDVISWCSMIQ 342

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           GY  +    EA+ LF  M+ S V PD  T L  +S  S        G++  GL I    V
Sbjct: 343 GYGLHGKGAEAVALFDQMHISGVKPDSITGLGVLSACS------RAGLVFKGLEIYNSLV 396

Query: 154 VD 155
            D
Sbjct: 397 KD 398


>gi|115471815|ref|NP_001059506.1| Os07g0436600 [Oryza sativa Japonica Group]
 gi|113611042|dbj|BAF21420.1| Os07g0436600 [Oryza sativa Japonica Group]
 gi|125600027|gb|EAZ39603.1| hypothetical protein OsJ_24038 [Oryza sativa Japonica Group]
          Length = 514

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 185/464 (39%), Positives = 280/464 (60%), Gaps = 45/464 (9%)

Query: 43  HSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101
           H+  L LG + ++P ++   +  Y     P  ++ +F+ +  +    YN+LI+    +  
Sbjct: 90  HAFSLRLGLLRADPVLANSFLLLYLRAASPGLARRLFDEMPARTASTYNTLIS---HSPP 146

Query: 102 HNEALELFSNMYYSNVSPDDFTLATI-SKLSGEIKDLNVGMLIHGLSIKIGF--VVDVIL 158
             +   +  +M      PD FT+++I      E++    G  +H  ++K G     D  +
Sbjct: 147 GVDVWPVVRHMVEDGCVPDRFTVSSILPACESELR----GRELHCFALKSGMCGAGDFHV 202

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            +SL+SMY + G+                        GHA           RRVFD M++
Sbjct: 203 GSSLVSMYFRVGQ-----------------------PGHA-----------RRVFDGMEQ 228

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           RNV +WTAM+ G+ ++G  ++A+  F  M +   + PN+++L+SVL    +L  L+ GKQ
Sbjct: 229 RNVVSWTAMVGGFTESGMFEDAVDAFRAMWVIGAVLPNRIALISVLSAVEALTDLAAGKQ 288

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HGFA+R  L+ +VSL NALI MY KCG L  AR++F+D  + KD I+W S++ GYGLHG
Sbjct: 289 VHGFAVRMGLSGEVSLNNALIVMYVKCGVLWYARQIFDDGRWCKDVISWCSMIQGYGLHG 348

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           KG EAV L+++M   G KPD IT +GVLSAC R+GL+ +GLEIYNS++  Y + PT E+ 
Sbjct: 349 KGAEAVALFDQMHISGVKPDSITGLGVLSACSRAGLVFKGLEIYNSLVKDYGVHPTEEMS 408

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
           AC+VD+LGR+G +++ALDFIK+M +EP PS+WGAL+ AS++H N E+QDL+ + L++LE 
Sbjct: 409 ACIVDLLGRSGMINQALDFIKSMSIEPGPSVWGALLDASIVHNNKEIQDLSCRYLLRLEE 468

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
            NPSN VS+SNL+A    W+ V  +R  +K   LKK PG SWI+
Sbjct: 469 GNPSNLVSVSNLHAFDGSWNIVEHVRAKIKQGALKKIPGFSWIN 512



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-KDVYLYNSLIN 94
           L   KQ H   + +G      ++  LI  Y  CG    ++ +F+  +  KDV  + S+I 
Sbjct: 283 LAAGKQVHGFAVRMGLSGEVSLNNALIVMYVKCGVLWYARQIFDDGRWCKDVISWCSMIQ 342

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           GY  +    EA+ LF  M+ S V PD  T L  +S  S        G++  GL I    V
Sbjct: 343 GYGLHGKGAEAVALFDQMHISGVKPDSITGLGVLSACS------RAGLVFKGLEIYNSLV 396

Query: 154 VD 155
            D
Sbjct: 397 KD 398


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 200/601 (33%), Positives = 312/601 (51%), Gaps = 69/601 (11%)

Query: 8   NTFAL---VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITA 64
           NTF +   +T ++      +HF+ +  + +++ L ++  +QI++ G   N +V+  ++T+
Sbjct: 49  NTFFIDDTLTQKHPRWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTS 108

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT- 123
           +    Q   ++ +F+      V L+N++  GY  N  + E + LF  M   +V P+ FT 
Sbjct: 109 WVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTF 168

Query: 124 ---LATISKLS-------------------------------------GEIKDLNVGML- 142
              L + +K+                                      G    L VGML 
Sbjct: 169 PLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLE 228

Query: 143 ---IHGLSIKIGFVV-----------------DVILANSLMSMYVKCGKFSECLNLFDEM 182
              +   S+  G+++                 DV+L N ++S Y++ G       LFD M
Sbjct: 229 RNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTM 288

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P R+  SWN  ++G+A++GD   V    ++F++M  RNV++W  +I GY  NG   E L 
Sbjct: 289 PYRDTMSWNTMLNGYANNGD---VEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLR 345

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302
            F  M +   + PN  +LV+VL  C+ L  L  GK +H +A        + + NALIDMY
Sbjct: 346 CFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMY 405

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362
           SKCG ++ A  VFE     KD ITW+S++ G   HG G +A+ L+++M   G KPD IT 
Sbjct: 406 SKCGLIENAMEVFESMDL-KDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITF 464

Query: 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
           +GVL +C   GL+ EG   +NS++N Y I P  E   C+VD+ GRAG LDRA++F+K MP
Sbjct: 465 IGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMP 524

Query: 423 VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482
           +E    IW AL+ A  ++ N ++ +LA + LI LEP+NP+NYV LSN+Y    RW  VA 
Sbjct: 525 MEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVAR 584

Query: 483 LRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           L+ +M+D G KK PGCS I ++     F   D+ H  S  IY +L  L+ ++R     P+
Sbjct: 585 LKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSFGYEPN 644

Query: 543 L 543
           +
Sbjct: 645 M 645


>gi|33147029|dbj|BAC80112.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 757

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 185/464 (39%), Positives = 280/464 (60%), Gaps = 45/464 (9%)

Query: 43  HSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101
           H+  L LG + ++P ++   +  Y     P  ++ +F+ +  +    YN+LI+    +  
Sbjct: 333 HAFSLRLGLLRADPVLANSFLLLYLRAASPGLARRLFDEMPARTASTYNTLIS---HSPP 389

Query: 102 HNEALELFSNMYYSNVSPDDFTLATI-SKLSGEIKDLNVGMLIHGLSIKIGF--VVDVIL 158
             +   +  +M      PD FT+++I      E++    G  +H  ++K G     D  +
Sbjct: 390 GVDVWPVVRHMVEDGCVPDRFTVSSILPACESELR----GRELHCFALKSGMCGAGDFHV 445

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            +SL+SMY + G+                        GHA           RRVFD M++
Sbjct: 446 GSSLVSMYFRVGQ-----------------------PGHA-----------RRVFDGMEQ 471

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           RNV +WTAM+ G+ ++G  ++A+  F  M +   + PN+++L+SVL    +L  L+ GKQ
Sbjct: 472 RNVVSWTAMVGGFTESGMFEDAVDAFRAMWVIGAVLPNRIALISVLSAVEALTDLAAGKQ 531

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HGFA+R  L+ +VSL NALI MY KCG L  AR++F+D  + KD I+W S++ GYGLHG
Sbjct: 532 VHGFAVRMGLSGEVSLNNALIVMYVKCGVLWYARQIFDDGRWCKDVISWCSMIQGYGLHG 591

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           KG EAV L+++M   G KPD IT +GVLSAC R+GL+ +GLEIYNS++  Y + PT E+ 
Sbjct: 592 KGAEAVALFDQMHISGVKPDSITGLGVLSACSRAGLVFKGLEIYNSLVKDYGVHPTEEMS 651

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
           AC+VD+LGR+G +++ALDFIK+M +EP PS+WGAL+ AS++H N E+QDL+ + L++LE 
Sbjct: 652 ACIVDLLGRSGMINQALDFIKSMSIEPGPSVWGALLDASIVHNNKEIQDLSCRYLLRLEE 711

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
            NPSN VS+SNL+A    W+ V  +R  +K   LKK PG SWI+
Sbjct: 712 GNPSNLVSVSNLHAFDGSWNIVEHVRAKIKQGALKKIPGFSWIN 755



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-KDVYLYNSLIN 94
           L   KQ H   + +G      ++  LI  Y  CG    ++ +F+  +  KDV  + S+I 
Sbjct: 526 LAAGKQVHGFAVRMGLSGEVSLNNALIVMYVKCGVLWYARQIFDDGRWCKDVISWCSMIQ 585

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           GY  +    EA+ LF  M+ S V PD  T L  +S  S        G++  GL I    V
Sbjct: 586 GYGLHGKGAEAVALFDQMHISGVKPDSITGLGVLSACS------RAGLVFKGLEIYNSLV 639

Query: 154 VD 155
            D
Sbjct: 640 KD 641


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 189/558 (33%), Positives = 301/558 (53%), Gaps = 44/558 (7%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           +  +V A   + K  KQ H      G   + FV   L   Y  CG+   ++ VF+ +  K
Sbjct: 121 NLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEK 180

Query: 85  DVYL-----------------------------------YNSLINGYVKNHGHNEALELF 109
           DV                                     +N +++G+ ++  H EA+ +F
Sbjct: 181 DVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMF 240

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
             M++    PD  T++++    G+ ++LN+G  IHG  IK G + D  + ++++ MY K 
Sbjct: 241 QKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKS 300

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWT 225
           G     + LFDE      G  N  I+G + +G   LV ++  +F   K +    NV +WT
Sbjct: 301 GHVYGIIKLFDEFEMMETGVCNAYITGLSRNG---LVDKALEMFGLFKEQKMELNVVSWT 357

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           ++I G  QNG   EAL LF EMQ+   ++PN+V++ S+LP C ++  L  G+  HGFA+R
Sbjct: 358 SIIAGCAQNGKDIEALELFREMQVAG-VKPNRVTIPSMLPACGNIAALGHGRSTHGFAVR 416

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             L  DV + +ALIDMY+KCG +  ++ VF +    K+ + W+S+++GY +HGK  E + 
Sbjct: 417 VHLLDDVHVGSALIDMYAKCGRIKMSQIVF-NMMPTKNLVCWNSLMNGYSMHGKAKEVMS 475

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           ++  ++    KPD I+   +LSACG+ GL +EG + +N +   Y IKP  E  +C+V++L
Sbjct: 476 IFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLL 535

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
           GRAG+L  A D IK +P EP   +WGAL+++  +  N ++ ++A + L  LEPENP  YV
Sbjct: 536 GRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYV 595

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYE 525
            +SN+YA+   W  V  +R  M+  GLKK+PGCSWI +  K +     DK+HP    I E
Sbjct: 596 LMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITE 655

Query: 526 MLDDLILIMRGAAASPHL 543
            +D++   MR +   P+L
Sbjct: 656 KMDEISEEMRKSGHRPNL 673



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 236/475 (49%), Gaps = 50/475 (10%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
           T Q+H++IL  G  ++ ++S KLI +Y+       + L+  SI    VY ++SLI    K
Sbjct: 34  TTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTK 93

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
               ++++ +FS M+   + PD   L  + K+  E+     G  IH ++   G  +D  +
Sbjct: 94  AKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFV 153

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
             SL  MY++CG+  +   +FD M +++V + +  + G+A  G    VV   R+  +M++
Sbjct: 154 QGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVV---RILSEMEK 210

Query: 219 R----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                N+ +W  +++G+ ++G   EA+++F +M       P++V++ SVLP+      L+
Sbjct: 211 SGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMH-HLGFCPDQVTVSSVLPSVGDSENLN 269

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS--------------------------- 307
            G+QIHG+ I++ L  D  + +A++DMY K G                            
Sbjct: 270 MGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLS 329

Query: 308 ----LDCARR---VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
               +D A     +F++     + ++W+SI++G   +GK  EA+ L+ +M   G KP+ +
Sbjct: 330 RNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRV 389

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           TI  +L ACG    +  G   +   +  + +     + + ++DM  + G++  +      
Sbjct: 390 TIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-DVHVGSALIDMYAKCGRIKMSQIVFNM 448

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI--QLEPENPSNYVSLSNLYAS 473
           MP + +   W +L++   MHG ++     ++SL+  +L+P+    ++S ++L ++
Sbjct: 449 MPTK-NLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPD----FISFTSLLSA 498



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 95/216 (43%), Gaps = 2/216 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L       +L   + +H   + +  + +  V + LI  YA CG+   SQ+VFN +
Sbjct: 390 TIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMM 449

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             K++  +NSL+NGY  +    E + +F ++  + + PD  +  ++    G++   + G 
Sbjct: 450 PTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGW 509

Query: 142 -LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHAS 199
              + +S + G    +   + ++++  + GK  E  +L  E+P + +   W   ++    
Sbjct: 510 KYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRL 569

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
             +  L   + +    ++  N   +  M N Y   G
Sbjct: 570 QNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKG 605


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 178/490 (36%), Positives = 288/490 (58%), Gaps = 17/490 (3%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N    T ++  Y    + + ++ +FN + +K+V  +N++I+GY +N   + A+ LF  M 
Sbjct: 129 NVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMP 188

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
             NV   +  ++ +++  G I++     L   +  +     DVI   ++++     G   
Sbjct: 189 ERNVVSWNTVMSMLAQ-CGRIEEAR--RLFDRMPER-----DVISWTAMIA-----GLLD 235

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
           E L+LF+ MP+R++ SWN  I+G   +GD     R+R++F++M ++NV +WT MI G VQ
Sbjct: 236 EALDLFERMPERDLPSWNTMITGLIQNGDLR---RARKLFNEMPKKNVISWTTMITGCVQ 292

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
            G+ +EAL +F  M   +  +PN+ + VSVL  CS+L GL  G+Q+H    +        
Sbjct: 293 EGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTF 352

Query: 294 LCNALIDMYSKCGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           + +ALI+MYSKCG L  AR++F+D  +  +D ++W+ I++ Y  HG G EA+  + +M  
Sbjct: 353 VVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRK 412

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G KPD +T VG+LSAC  +GL+ EGL+ ++ ++    I    +  AC+VD+ GRAG+L 
Sbjct: 413 SGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLK 472

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A  FI+ +  +PS  +WGAL++   +H N ++   A K L+++EPEN   Y+ LSN+YA
Sbjct: 473 EAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYA 532

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           S+ +W   A +R  MKD+GLKK PGCSWI +  + H F V DK+H  S  IY +L DL  
Sbjct: 533 STGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHS 592

Query: 533 IMRGAAASPH 542
            M+ A   P+
Sbjct: 593 KMKKAGYEPN 602



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 154/345 (44%), Gaps = 62/345 (17%)

Query: 152 FVVD--VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           F VD  V   N +++   K G+  E   LFDEM + +V +W   ISG+   G   ++  +
Sbjct: 61  FTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCG---MIEEA 117

Query: 210 RRVFD--------------------------------QMKRRNVYAWTAMINGYVQNGDL 237
           RR+FD                                +M  +NV +W  MI+GY QNG +
Sbjct: 118 RRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRI 177

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG-------------LSGGKQIHGF-- 282
           D A+ LF +M  ++ +  N V  +S+L  C  +               +S    I G   
Sbjct: 178 DSAMYLFEKMPERNVVSWNTV--MSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLD 235

Query: 283 ----AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
                  +    D+   N +I    + G L  AR++F +    K+ I+W+++++G    G
Sbjct: 236 EALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMP-KKNVISWTTMITGCVQEG 294

Query: 339 KGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           +  EA+ ++++M+   G+KP+  T V VL AC     + EG +++  +I+    + +T +
Sbjct: 295 ESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVH-QIISKTVYQDSTFV 353

Query: 398 CACVVDMLGRAGQLDRALD-FIKTMPVEPSPSIWGALVSASVMHG 441
            + +++M  + G+L  A   F   M  +     W  +++A   HG
Sbjct: 354 VSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHG 398



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 44/182 (24%)

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK- 349
           DV     +I  Y KCG ++ ARR+F+     K+ +TW+++V GY    K  +A  L+N+ 
Sbjct: 97  DVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEM 156

Query: 350 ------------------------MVCLGSKPD-----IITIVGVLSACGRSGLINEGLE 380
                                   M      P+       T++ +L+ CGR   I E   
Sbjct: 157 PNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGR---IEEARR 213

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           +++ +     I  T  I          AG LD ALD  + MP    PS W  +++  + +
Sbjct: 214 LFDRMPERDVISWTAMI----------AGLLDEALDLFERMPERDLPS-WNTMITGLIQN 262

Query: 441 GN 442
           G+
Sbjct: 263 GD 264



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 116/277 (41%), Gaps = 31/277 (11%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYV 97
           +Q H  I    +  + FV + LI  Y+ CG+   ++ +F+      +D+  +N +I  Y 
Sbjct: 336 QQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYA 395

Query: 98  KNHGH-NEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
            +HG+  EA+  F  M  S   PDD T +  +S  S      + G++  GL      V D
Sbjct: 396 -HHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACS------HAGLVEEGLKYFDELVKD 448

Query: 156 -VILANS-----LMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVR 208
             IL        L+ +  + G+  E     + +  + +   W   ++G     +  +  +
Sbjct: 449 RSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQ 508

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           + +   +++  N   +  + N Y   G   EA  + L+M+ K          +   P CS
Sbjct: 509 AAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKG---------LKKQPGCS 559

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALI-DMYSK 304
               +  G ++H F +  + +    L  +L+ D++SK
Sbjct: 560 ---WIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSK 593


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 180/508 (35%), Positives = 287/508 (56%), Gaps = 12/508 (2%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A+ ++ +  +Q H+ +    H S+ ++ T L+  YA C +P ++Q VF+++  +++
Sbjct: 154 LSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNI 213

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NSLI  Y +N   +EAL LF  M      PD+ TLA++      +     G  +H  
Sbjct: 214 VSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTR 273

Query: 147 SIKIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
            +K   F  D++L N+L+ MY KCG+  E   +FD M  R+V S    I+G+A S +   
Sbjct: 274 MVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSAN--- 330

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  ++ VF QM  +NV AW  +I  Y  N + +EAL LF+ ++ ++ + P   +  +VL 
Sbjct: 331 VGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLK-RESVWPTHYTYGNVLN 389

Query: 266 TCSSLIGLSGGKQIH------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            C++L  L  G+Q H      GF        DV + N+L+DMY K GS+    +VFE  +
Sbjct: 390 ACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMA 449

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D ++W++++ GY  +G+  +A+LL+ +M+C   +PD +T++GVLSACG SGL+ EG 
Sbjct: 450 -ARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGR 508

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             + S+   + I PT +   C++D+LGRAG L    + I+ MP+EP   +W +L+ A  +
Sbjct: 509 RYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRL 568

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H N +M + A   L +L+P+N   YV LSN+YA   +W  V  +R  MK RG+ K PGCS
Sbjct: 569 HKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCS 628

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEML 527
           WI I  K + F   D  HPC   I++ L
Sbjct: 629 WIEIGRKVNVFLARDNIHPCRNEIHDTL 656



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/483 (22%), Positives = 198/483 (40%), Gaps = 86/483 (17%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    L++A A  G+   +  +F +I   D   YN+++    ++    +AL   + M+
Sbjct: 80  NTFSYNALLSACARLGRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMH 139

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
             +   + ++ A+        K    G  +H L  K     DV +  +L+ MY KC +  
Sbjct: 140 ADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPE 199

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
           E   +FD MP+RN+ SWN                                  ++I  Y Q
Sbjct: 200 EAQKVFDAMPERNIVSWN----------------------------------SLITCYEQ 225

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDV 292
           NG +DEAL LF+ M +KD   P++V+L SV+  C+ L     G+Q+H   ++ +    D+
Sbjct: 226 NGPVDEALALFVRM-MKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDM 284

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSF------------------------------NK 322
            L NAL+DMY+KCG    A+ VF+  +                                K
Sbjct: 285 VLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEK 344

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           + + W+ +++ Y  + +  EA+ L+ ++      P   T   VL+AC     +  G + +
Sbjct: 345 NVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAH 404

Query: 383 NSVINT-YRIKPTTE----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
             V+   +R     E    +   +VDM  + G +       + M    + S W A++   
Sbjct: 405 VHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVS-WNAMIVGY 463

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSL--------SNLYASSRRWDAVAELRTMMKD 489
             +G ++   L ++ ++    E P +   +        S L    RR+      ++M +D
Sbjct: 464 AQNGRAKDALLLFERML-CSNERPDSVTMIGVLSACGHSGLVKEGRRY-----FQSMTED 517

Query: 490 RGL 492
            G+
Sbjct: 518 HGI 520



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 130/261 (49%), Gaps = 9/261 (3%)

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG--DFSLVVRS 209
           F  +  L N+L+S Y + G   +   +FD MP RN  S+N  +S  A  G  D +L +  
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALAL-- 103

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
              F  +   +  ++ A++    Q+G   +AL     M   D +  N  S  S L  C+S
Sbjct: 104 ---FGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFV-LNAYSFASALSACAS 159

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
                 G+Q+H    +     DV +  AL+DMY+KC   + A++VF D+   ++ ++W+S
Sbjct: 160 EKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVF-DAMPERNIVSWNS 218

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           +++ Y  +G   EA+ L+ +M+  G  PD +T+  V+SAC       EG +++  ++ + 
Sbjct: 219 LITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSD 278

Query: 390 RIKPTTEICACVVDMLGRAGQ 410
           R +    +   +VDM  + G+
Sbjct: 279 RFREDMVLNNALVDMYAKCGR 299


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 174/522 (33%), Positives = 310/522 (59%), Gaps = 7/522 (1%)

Query: 8   NTFALVTSRNY--TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           NTF  + ++ +   S T    L    +   L+     H++I+ +    + +    LI  Y
Sbjct: 232 NTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMY 291

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125
           A CG+   ++ VF+ +   +   + SLI G  +     EAL LF+ M    V+ D FTLA
Sbjct: 292 AKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLA 351

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           T+  +    KD+++G  +H  +I  G    V +AN+L++MY KCG   +  + F+ MP R
Sbjct: 352 TVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIR 411

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
           ++ SW   I+  + +GD   V ++R  FD+M  RNV +W +M+  Y+Q G  +E L +++
Sbjct: 412 DIISWTAMITAFSQAGD---VEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYI 468

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
           +M L++ ++ + ++  + +  C+ L  L  G QI   A +   + +VS+ N+++ MYS+C
Sbjct: 469 QM-LREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRC 527

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           G ++ A+++F  S   K+ ++W+++++GY  +G+G + + ++ KM+ +G+ PD I+ V V
Sbjct: 528 GQIEEAQKMF-SSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSV 586

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           LS C  SG ++EG   + S+   + I P +E   C+VD+LGRAGQL++A + I  MP +P
Sbjct: 587 LSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKP 646

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485
           + +IWGAL++A  +HGN+++ +LA K+L++L+ E P +Y  L+N+Y+ S +   V  +R 
Sbjct: 647 NAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRK 706

Query: 486 MMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           +M+D+G++K+PGCSWI +  + H F+V D  HP    ++ ML
Sbjct: 707 LMRDKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQIKDVHRML 748



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 233/487 (47%), Gaps = 33/487 (6%)

Query: 31  ATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYN 90
           A+ RS+ + ++ H+Q++ +G  S+ F+   L+  Y+ CG  + +  VF  I   +VY +N
Sbjct: 15  ASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWN 74

Query: 91  SLINGYVKNHGHNEALELFSNM--------------YYSNVSPDDFTLATISKLSGEIKD 136
           ++I+G+  +    EA +LF  M              Y+ N   +    ATI K SG +  
Sbjct: 75  TMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELE----ATI-KASGSLGY 129

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L + + +HG + K  F +D  +  S++ MY+KCG       +F   P  ++  WN  I G
Sbjct: 130 LKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYG 189

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           ++  G    V ++  +F +M  R+  +W  MI+   Q+G   E L  FLEM       PN
Sbjct: 190 YSKYGS---VKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEM-WNQGFRPN 245

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            ++  SVL  C+S+  L  G  +H   +R E   DV     LIDMY+KCG L+ AR+VF 
Sbjct: 246 SMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVF- 304

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D     +A++W+S++ G    G   EA++L+N+M  +    D  T+  VL  C     I+
Sbjct: 305 DGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDIS 364

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G +++   I T  +  +  +   +V M  + G + +A    + MP+    S W A+++A
Sbjct: 365 IGEQLHAHTI-TRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIIS-WTAMITA 422

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
               G+ E    A +   ++   N  ++ S+   Y     W+   ++   M   G+K   
Sbjct: 423 FSQAGDVEK---AREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKT-- 477

Query: 497 GCSWISI 503
              WI+ 
Sbjct: 478 --DWITF 482



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 112/486 (23%), Positives = 190/486 (39%), Gaps = 98/486 (20%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           + +  ++  ++ S +   LKL  Q H          +  V T ++  Y  CG    +Q V
Sbjct: 112 FHNGELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKV 171

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFS--------------------------- 110
           F    +  ++ +NS+I GY K     +ALELF+                           
Sbjct: 172 FCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETL 231

Query: 111 ----NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
                M+     P+  T A++      I DL  G  +H   +++   +DV     L+ MY
Sbjct: 232 NTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMY 291

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
            KCG+      +FD + + N  SW                                  T+
Sbjct: 292 AKCGRLESARQVFDGLTEHNAVSW----------------------------------TS 317

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           +I G  Q G  +EALVLF +M+ +  +  ++ +L +VL  C S   +S G+Q+H   I +
Sbjct: 318 LIGGVAQAGFQEEALVLFNQMR-EVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITR 376

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFE------------------------------ 316
            L+  V + NAL+ MY+KCG +  A   FE                              
Sbjct: 377 GLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYF 436

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D    ++ I+W+S+++ Y   G   E + +Y +M+  G K D IT    +SAC    ++ 
Sbjct: 437 DKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLI 496

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G +I               +   VV M  R GQ++ A     ++ ++   S W A+++ 
Sbjct: 497 LGNQILAQA-EKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVS-WNAMMAG 554

Query: 437 SVMHGN 442
              +G 
Sbjct: 555 YAQNGQ 560



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 154/348 (44%), Gaps = 62/348 (17%)

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           K    ++ + +   +H   I +G    + L N L++MY  CG  S+   +F  +   NV 
Sbjct: 12  KECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVY 71

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           SWN  ISG A SG       + ++F++M  R+  +W +M++GY  NG+L+          
Sbjct: 72  SWNTMISGFADSGQMR---EAEKLFEKMPERDSVSWNSMMSGYFHNGELE---------- 118

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
                        + +    SL  L    Q+HGFA + +   D  +  +++DMY KCG++
Sbjct: 119 -------------ATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAM 165

Query: 309 DCARRVF----EDSSF--------------------------NKDAITWSSIVSGYGLHG 338
           D A++VF      S F                           +D ++W++++S    HG
Sbjct: 166 DFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHG 225

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
            G E +  + +M   G +P+ +T   VLSAC     +  G  ++  ++   R++P  ++ 
Sbjct: 226 FGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIV---RMEPCLDVY 282

Query: 399 A-C-VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           A C ++DM  + G+L+ A      +  E +   W +L+      G  E
Sbjct: 283 AGCGLIDMYAKCGRLESARQVFDGL-TEHNAVSWTSLIGGVAQAGFQE 329


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 183/514 (35%), Positives = 288/514 (56%), Gaps = 5/514 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  + L+   + + +K  ++ H+ ++  G   + FVS  L+  Y  CG   + + VF+ +
Sbjct: 93  TFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEM 152

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           +   + L+  +I  YV      +ALELF  M    ++PD   ++T+    G + DL V  
Sbjct: 153 RQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAK 212

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H    K G  VD  ++++L+S Y +CG        F E P +N+  WN  I       
Sbjct: 213 AMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHN 272

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           +  L    +++F  M  R+V +W +MI G+ + G   EAL  F EM+    + PN ++L+
Sbjct: 273 NLEL---GKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSG-VSPNALTLL 328

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S L  C+S   L  G  IH +  + ++N D SL ++LIDMYSKCG +D A ++FE+S+  
Sbjct: 329 STLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEEST-R 387

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D  TW+SIV G  +HG+G +A+  ++KM     +PD +T+VGVLSAC  +GL+++G   
Sbjct: 388 RDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWY 447

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + S+   + + P  E   C+VD+LGR G L  A D I  MP+E +  IWGA +SA  +H 
Sbjct: 448 FQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHN 507

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ ++A + L+ L+P +P   V LSN+YA   +WD    LR  +K +GLKKSPGCS I
Sbjct: 508 NVELGEVAARRLLGLDPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSI 567

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            ++G  H F V D +HPC   I  M++ +  +MR
Sbjct: 568 EVNGSVHGFLVGDNSHPCYTEINSMVEKIEKLMR 601



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/481 (20%), Positives = 200/481 (41%), Gaps = 99/481 (20%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQIL------SLGHISNPFVSTKLITAYALCGQPTQS 74
           A +Q F Q+S T  S +L   ++   L      ++  + +P  +++L  A          
Sbjct: 3   ACMQRFPQLSHTRFSFRLHPLTNPNKLPRIHGNTIATVEDPSAASRLDCA---------- 52

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNH--GHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
                     +V+++N++I   V+N     +  L  +     + + P+  T   + K   
Sbjct: 53  ----------NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALV 102

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
             +++  G  +H   ++ GF     ++ +L+  YV CG   +   +FDE           
Sbjct: 103 SGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDE----------- 151

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                                  M++  +  WT +I  YV     ++AL LF  M+ +  
Sbjct: 152 -----------------------MRQPGLVLWTLIIRAYVCVTFPEKALELFRTMR-EVG 187

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           + P+ V++ +V+  C  L  L   K +H F  +  +  D  + + LI  Y +CGSLD A 
Sbjct: 188 LTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAY 247

Query: 313 RVFEDSSF------------------------------NKDAITWSSIVSGYGLHGKGHE 342
           R F+++                                ++D ++W+S++ G+   G+  E
Sbjct: 248 RFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQE 307

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+  +++M   G  P+ +T++  LSAC   G ++ G  I+ + ++   +     + + ++
Sbjct: 308 ALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIH-AYVDKNDMNRDGSLDSSLI 366

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI---QLEPE 459
           DM  + G +D+A+   +          W ++V    MHG  E + L Y S +   Q++P+
Sbjct: 367 DMYSKCGDIDKAVQIFEE-STRRDLFTWTSIVCGLAMHGRGE-KALHYFSKMKEAQVQPD 424

Query: 460 N 460
           +
Sbjct: 425 D 425


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/582 (33%), Positives = 304/582 (52%), Gaps = 66/582 (11%)

Query: 24  QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83
           +HF+ +  + +++ L ++  +QI++ G   N +V+  ++T++    Q   ++ +F+    
Sbjct: 26  EHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPD 85

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT----LATISKLS-------- 131
             V L+N++  GY  N  + E + LF  M   +V P+ FT    L + +K+         
Sbjct: 86  PKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEI 145

Query: 132 -----------------------------GEIKDLNVGML----IHGLSIKIGFVV---- 154
                                        G    L VGML    +   S+  G+++    
Sbjct: 146 HCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRV 205

Query: 155 -------------DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
                        DV+L N ++S Y++ G       LFD MP R+  SWN  ++G+A++G
Sbjct: 206 ALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNG 265

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D   V    ++F++M  RNV++W  +I GY  NG   E L  F  M +   + PN  +LV
Sbjct: 266 D---VEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLV 322

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           +VL  C+ L  L  GK +H +A        + + NALIDMYSKCG ++ A  VFE     
Sbjct: 323 TVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDL- 381

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD ITW+S++ G   HG G +A+ L+++M   G KPD IT +GVL +C   GL+ EG   
Sbjct: 382 KDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSY 441

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +NS++N Y I P  E   C+VD+ GRAG LDRA++F+K MP+E    IW AL+ A  ++ 
Sbjct: 442 FNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYK 501

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N ++ +LA + LI LEP+NP+NYV LSN+Y    RW  VA L+ +M+D G KK PGCS I
Sbjct: 502 NIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLI 561

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            ++     F   D+ H  S  IY +L  L+ ++R     P++
Sbjct: 562 EVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSFGYGPNM 603



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 48/107 (44%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT+   L   A   +L L K  H    ++G   + +V   LI  Y+ CG    +  VF S
Sbjct: 319 ATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFES 378

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           +  KD+  +NS+I G   +    +AL LF  M  +   PD  T   +
Sbjct: 379 MDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGV 425


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/541 (34%), Positives = 293/541 (54%), Gaps = 38/541 (7%)

Query: 3   LSSARNTFALVTSRNY--TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
              A   + L+ S  +   + T    L+  A    L+L  + H+ ++  G   + FV T 
Sbjct: 93  FDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTS 152

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L+  YA CG    +  VF+ I  K+V  + ++I+GY+      EA+++F  +   N++PD
Sbjct: 153 LVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPD 212

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            FT+  +     ++ DLN G  IH   +++G V +V +  SL+ MY KCG          
Sbjct: 213 SFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNME------- 265

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                                      ++R VFD M  +++ +W AMI GY  NG   EA
Sbjct: 266 ---------------------------KARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA 298

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           + LFL+MQ ++ ++P+  ++V VL  C+ L  L  G+ + G   R E  ++  L  ALID
Sbjct: 299 IDLFLQMQ-RENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALID 357

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           +Y+KCGS+  A  VF+     KD + W++I+SG  ++G    +  L+ ++  LG KPD  
Sbjct: 358 LYAKCGSMSRAWEVFKGMK-EKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGN 416

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T +G+L  C  +GL++EG   +NS+   + + P+ E   C+VD+LGRAG LD A   I+ 
Sbjct: 417 TFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRN 476

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP+E +  +WGAL+ A  +H ++++ +LA K LI+LEP N  NYV LSN+Y+++ +WD  
Sbjct: 477 MPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEA 536

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540
           A++R  M ++ ++K PGCSWI + G  H F V DK HP S  IY  LD+L   M+ A   
Sbjct: 537 AKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYV 596

Query: 541 P 541
           P
Sbjct: 597 P 597


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 179/518 (34%), Positives = 291/518 (56%), Gaps = 12/518 (2%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           ++ ++ K  +  +LS+G   N  V   ++  +  CG+   ++  F  I+ KDV+++N ++
Sbjct: 125 KNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMV 184

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +GY       +AL +F  M    V P+  T+A+       +  L  G  IHG  IK+  +
Sbjct: 185 SGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEEL 244

Query: 154 -VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN--VRISGHASSGD-------F 203
             D+++ NSL+  Y KC         F  + Q ++ SWN  + ++G    GD       F
Sbjct: 245 DSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFF 304

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
             +  +  VF ++  R+V  W ++I+   Q+G    AL L  EM L + +E N V++VS 
Sbjct: 305 QRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSN-VEVNTVTMVSA 363

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           LP CS L  L  GK+IH F IR  L+    + N+LIDMY +CGS+  +RR+F D    +D
Sbjct: 364 LPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF-DLMPQRD 422

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            ++W+ ++S YG+HG G +AV L+ +   +G KP+ IT   +LSAC  SGLI EG + + 
Sbjct: 423 LVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 482

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            +   Y + P  E  AC+VD+L RAGQ +  L+FI+ MP EP+ ++WG+L+ A  +H N 
Sbjct: 483 MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNP 542

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           ++ + A + L +LEP++  NYV ++N+Y+++ RW+  A++R +MK+RG+ K PGCSWI +
Sbjct: 543 DLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 602

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             K H F V D +HP    I   ++ L   ++     P
Sbjct: 603 KRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVP 640



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 110/458 (24%), Positives = 206/458 (44%), Gaps = 80/458 (17%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           LQ      +L+L  Q H+Q++  G     F+ ++L+  Y   G    ++ +F+ +  ++V
Sbjct: 17  LQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNV 76

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
           + + +++  Y     + E ++LF  M    V PD F    + K   E+K+  VG  ++  
Sbjct: 77  FSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDY 136

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            + IGF  +  +  S++ M++KCG+       F+E+  ++V  WN+ +SG+ S G+F   
Sbjct: 137 MLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK-- 194

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                                           +AL +F +M L+  ++PN +++ S +  
Sbjct: 195 --------------------------------KALNVFRKMVLEG-VKPNSITIASAVSA 221

Query: 267 CSSLIGLSGGKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDCARRVF------EDSS 319
           C++L  L  G++IHG+ I+ +EL+ D+ + N+L+D Y+KC S++ ARR F      +  S
Sbjct: 222 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 281

Query: 320 FN------------------------------------KDAITWSSIVSGYGLHGKGHEA 343
           +N                                    +D + W+SI+S     G+   A
Sbjct: 282 WNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNA 341

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + L  +M     + + +T+V  L AC +   + +G EI+  +I    +     I   ++D
Sbjct: 342 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRC-GLDTCNFILNSLID 400

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           M GR G + ++      MP     S W  ++S   MHG
Sbjct: 401 MYGRCGSIQKSRRIFDLMPQRDLVS-WNVMISVYGMHG 437



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 95/202 (47%), Gaps = 4/202 (1%)

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C  L  L  G Q+H   +   ++    L + L+++Y + G ++ ARR+F+  S  
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS-E 73

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           ++  +W++I+  Y   G   E + L+  MV  G +PD      V  AC        G ++
Sbjct: 74  RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 133

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           Y+ +++    +  + +   ++DM  + G++D A  F + +  +    +W  +VS     G
Sbjct: 134 YDYMLSI-GFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSGYTSKG 191

Query: 442 NSEMQDLAYKSLIQLEPENPSN 463
             +     ++ ++ LE   P++
Sbjct: 192 EFKKALNVFRKMV-LEGVKPNS 212


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 175/483 (36%), Positives = 292/483 (60%), Gaps = 6/483 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+Q++  GH  +PF+  +L+ + + C     +  +F    + +VYLY +LI+G+V +  +
Sbjct: 69  HAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNY 128

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EA++L+S M + ++ PD++ +A+I K  G    L  G  +H  ++K+GF  + ++   +
Sbjct: 129 LEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRI 188

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           M +Y KCG+  +   +F+EMP+  V S  V IS ++  G   LV  +  VF +++R++  
Sbjct: 189 MELYGKCGELGDARRVFEEMPEDVVAS-TVMISSYSDQG---LVEEAGAVFSRVRRKDTV 244

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            WTAMI+G+V+N + + AL  F  MQ  + + PN+ ++V VL  CS L  L  G+ +H +
Sbjct: 245 CWTAMIDGFVRNEETNRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGRWVHSY 303

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
             + E+  ++ + NALI+MYS+CGS+D A+ VF D   ++D IT+++++SG  ++GK  +
Sbjct: 304 MRKFEIELNLFVGNALINMYSRCGSIDEAQTVF-DEMKDRDVITYNTMISGLSMNGKSRQ 362

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ L+  MV    +P  +T VGVL+AC   GL++ G EI++S+   YR++P  E   C+V
Sbjct: 363 AIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMV 422

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGR G+L+ A D I+TM + P   + G L+SA  MH N E+ +   K L      +  
Sbjct: 423 DLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSG 482

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            YV LS++YASS +W   A++R  MK+ G++K PGCS I ++ + H F + D  HP    
Sbjct: 483 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKER 542

Query: 523 IYE 525
           IYE
Sbjct: 543 IYE 545



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 144/357 (40%), Gaps = 68/357 (19%)

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
           + +N  + IH   I+ G   D  +   L+    KC        +F      NV  +   I
Sbjct: 60  RHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALI 119

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
            G  SSG++                                   EA+ L+  M L + I 
Sbjct: 120 DGFVSSGNYL----------------------------------EAIQLYSRM-LHESIL 144

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+   + S+L  C S + L  G+++H  A++   + +  +   ++++Y KCG L  ARRV
Sbjct: 145 PDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRV 204

Query: 315 FED------------SSFN-----------------KDAITWSSIVSGYGLHGKGHEAVL 345
           FE+            SS++                 KD + W++++ G+  + + + A+ 
Sbjct: 205 FEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALE 264

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
            +  M     +P+  TIV VLSAC + G +  G  ++ S +  + I+    +   +++M 
Sbjct: 265 AFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVH-SYMRKFEIELNLFVGNALINMY 323

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI--QLEPEN 460
            R G +D A      M  +     +  ++S   M+G S      ++ ++  +L P N
Sbjct: 324 SRCGSIDEAQTVFDEMK-DRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTN 379



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L++ +  HS +       N FV   LI  Y+ CG   ++Q VF+ ++ +DV  YN++I+
Sbjct: 293 ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMIS 352

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           G   N    +A+ELF  M    + P + T   +
Sbjct: 353 GLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGV 385


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 176/483 (36%), Positives = 275/483 (56%), Gaps = 9/483 (1%)

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           KL  +YA  G+   S  +F   Q+  V+ + ++I+G+     H +AL  ++ M    V P
Sbjct: 14  KLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEP 73

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           + FT ++I KL      +  G  +H  ++K+GF  D+ +   L+ +Y + G       LF
Sbjct: 74  NAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 129

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D MP++++ S    ++ +A  G+      +R +FD M+ R+   W  MI+GY QNG  +E
Sbjct: 130 DTMPEKSLVSLTAMLTCYAKHGELD---AARVLFDGMEERDGVCWNVMIDGYTQNGMPNE 186

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           ALVLF  M LK + +PN+V+++SVL  C  L  L  G+ +H +     +  +V +  AL+
Sbjct: 187 ALVLFRRM-LKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALV 245

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           DMYSKCGSL+ AR VF D   +KD + W+S++ GY + G   EA+ L+  M  +G  P  
Sbjct: 246 DMYSKCGSLEDARLVF-DKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTN 304

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           IT +G+LSACG SG + EG +I+N + + Y I+P  E   C+V++LGRAG +++A + +K
Sbjct: 305 ITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVK 364

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            M +EP P +WG L+ A  +HG   + +   + L+     N   Y+ LSN+YA+   WD 
Sbjct: 365 NMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDG 424

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
           VA LRTMMKD G+KK PGCS I ++ K H F      HP    IY ML+++   ++    
Sbjct: 425 VARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGY 484

Query: 540 SPH 542
           +P 
Sbjct: 485 TPQ 487



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 44/286 (15%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T ++T YA  G+   ++++F+ ++ +D   +N +I+GY +N   NEAL LF  M  +   
Sbjct: 141 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 200

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           P++ T+ ++    G++  L  G  +H      G   +V +  +L+ MY KCG   +   +
Sbjct: 201 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 260

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           FD++  ++V +WN                                  +MI GY   G   
Sbjct: 261 FDKIDDKDVVAWN----------------------------------SMIVGYAMXGFSQ 286

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVS 293
           EAL LF  M  +  + P  ++ + +L  C     ++ G  I       + I  ++ H   
Sbjct: 287 EALQLFKSM-CRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH--- 342

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
               ++++  + G ++ A  + ++ +   D + W +++    LHGK
Sbjct: 343 -YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 387



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L       +L+  +  HS I + G   N  V T L+  Y+ CG    ++LVF+ I
Sbjct: 205 TVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKI 264

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
             KDV  +NS+I GY       EAL+LF +M    + P + T   I
Sbjct: 265 DDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGI 310


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 181/510 (35%), Positives = 283/510 (55%), Gaps = 51/510 (10%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT--QSQLVFNSIQHKDVYLYNSLIN 94
           K  KQ H+Q+L  G   +PF +++LITA AL   P+   +Q VF+ I H ++Y +N+LI 
Sbjct: 49  KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108

Query: 95  GYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            Y  +   +++L +F  M + +   PD FT   + K + E+++L  G   HG+ IK+   
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLG 168

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV + NSL+  Y KCG+                                       RVF
Sbjct: 169 SDVFILNSLIHFYAKCGELG----------------------------------LGYRVF 194

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
               RR+V +W +MI  +VQ G  +EAL LF EM+ ++ ++PN +++V VL  C+     
Sbjct: 195 VNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQN-VKPNGITMVGVLSACAKKSDF 253

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             G+ +H +  R  +   ++L NA++DMY+KCGS++ A+R+F D    KD ++W++++ G
Sbjct: 254 EFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLF-DKMPEKDIVSWTTMLVG 312

Query: 334 YG------------LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           Y             +HG G +A+ L++KM     KP+ +T   +L AC   GL+ EG   
Sbjct: 313 YAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTF 372

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +N +   Y + P  +  AC+VD+LGRAG L+ A++ I+ MP+ P+ S+WGAL+ A  +H 
Sbjct: 373 FNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHE 432

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N  + + A   LI+LEP N   YV LSN+YA + +WD V+ LR +M+D GLKK PGCS I
Sbjct: 433 NVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSI 492

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
            + G  H F V D +HP +  IY  LD+++
Sbjct: 493 EVDGIVHEFLVGDNSHPSAKKIYAKLDEIV 522



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 141/320 (44%), Gaps = 30/320 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    ++ ++    L   K  H  ++ +   S+ F+   LI  YA CG+      VF + 
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNX 197

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +DV  +NS+I  +V+     EALELF  M   NV P+  T+  +     +  D   G 
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H    +      + L+N+++ MY KCG   +   LFD+MP++++ SW   + G+A  G
Sbjct: 258 WVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           ++                          G   +G   +A+ LF +MQ +D+++PN V+  
Sbjct: 318 EYDAA----------------------QGLAMHGHGKDAIALFSKMQ-EDKVKPNAVTFT 354

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNH----DVSLCNALIDMYSKCGSLDCARRVFED 317
           ++L  CS +  +  G+    F  + EL +     V     ++D+  + G L+ A  + E 
Sbjct: 355 NILCACSHVGLVEEGRT---FFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEK 411

Query: 318 SSFNKDAITWSSIVSGYGLH 337
                 A  W +++    +H
Sbjct: 412 MPMAPAASVWGALLGACTIH 431


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/530 (34%), Positives = 303/530 (57%), Gaps = 9/530 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L   A   SL+   + HS I+  G  S+ FV   LI  Y++ G    ++ +F+  
Sbjct: 113 TFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDES 172

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D+  YN++I GY + +    AL LF  M  S + PD+FT   +  +   + + NVG 
Sbjct: 173 LVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGK 232

Query: 142 LIHGLSIKIGFVVD--VILANSLMSMYVKCGKFSECLNLFDEM-PQRNVGSWNVRISGHA 198
            IH    K    +D  ++L ++++ MY KCG  +    +F  M   ++  +W+  + G+A
Sbjct: 233 QIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYA 292

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
             G+ ++   +R++F+ M  R+V +WTAMI+GY Q G   EAL LF EM+    I+P++V
Sbjct: 293 RCGEINV---ARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALG-IKPDEV 348

Query: 259 SLVSVLPTCSSLIGLSGGKQI-HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           +LV+VL  C+ L     GK++ H +      N +  L  A++DMY+KCGS+D A  +F  
Sbjct: 349 TLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRR 408

Query: 318 SSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
              N K    ++S+++G   HG G  A+ ++ +++  G KPD +T VGVL ACG SGLI 
Sbjct: 409 VGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIE 468

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EG +++ S+ N Y IKP  E   C+VD+LGR G L+ A D ++ MP E +  IW AL+SA
Sbjct: 469 EGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSA 528

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
              HGN ++ ++A + L+++E ++ + YV LSN+ A + +W+   ++R +M+D G++K P
Sbjct: 529 CRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPP 588

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
           G S+I + G  H F  +DK+HP    I  ML D+ + ++ A   P+  ++
Sbjct: 589 GWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQV 638



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 216/467 (46%), Gaps = 75/467 (16%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT---QSQLVFNSIQHKDVYLYN 90
           +S K   Q H+Q +  G     F  ++LI+ ++L G       S+L+F+ I   +++++N
Sbjct: 20  KSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWN 79

Query: 91  SLINGYVKNHGHNEALELFSNMYYSNVSP-DDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           ++I GY ++    EA+ L+ +M    ++P ++FT   +      +  L  G  +H   IK
Sbjct: 80  TMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIK 139

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            GF  D+ + N+L+ +Y   G  +    LFDE   R++ S+N                  
Sbjct: 140 HGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTM---------------- 183

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
                             I GY +    + AL LF EMQ    I P++ + V++   CS 
Sbjct: 184 ------------------IKGYAEVNQPESALCLFGEMQ-NSGILPDEFTFVALFSVCSV 224

Query: 270 LIGLSGGKQIHGFAIR--KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS-------- 319
           L   + GKQIH    +  + ++ ++ L +A++DMY+KCG ++ A RVF            
Sbjct: 225 LNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAW 284

Query: 320 -------------------FN----KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
                              FN    +D I+W++++SGY   G+  EA+ L+ +M  LG K
Sbjct: 285 SSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIK 344

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD +T+V VLSAC R G  + G  +Y+  I        T + A V+DM  + G +D AL+
Sbjct: 345 PDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALE 404

Query: 417 FIKTMPVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPEN 460
             + +     +  ++ ++++    HG  E     ++ LI   L+P+ 
Sbjct: 405 IFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDE 451



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 138/286 (48%), Gaps = 5/286 (1%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           SR +F Q+   N++ W  MI GY ++ +  EA+VL++ M  K    PN  +   +L +C+
Sbjct: 63  SRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCA 122

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            L  L  G ++H   I+     D+ + NALI +YS  G+L+ AR +F D S  +D ++++
Sbjct: 123 RLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLF-DESLVRDLVSYN 181

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++ GY    +   A+ L+ +M   G  PD  T V + S C      N G +I+  V   
Sbjct: 182 TMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKN 241

Query: 389 YR-IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            R I     + + +VDM  + G ++ A     TM    S + W ++V      G     +
Sbjct: 242 LRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEI---N 298

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           +A K    +   +  ++ ++ + Y+ + +     EL   M+  G+K
Sbjct: 299 VARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIK 344



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 8/132 (6%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS---LDCARRVF 315
           S + +L +C S      G QIH   I   L+H +   + LI  +S  GS   LD +R +F
Sbjct: 11  SSLCLLESCKSF---KQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLF 67

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLSACGRSGL 374
                  +   W++++ GY       EA++LY  M+  G + P+  T   +L++C R   
Sbjct: 68  SQID-CPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSS 126

Query: 375 INEGLEIYNSVI 386
           +  G E+++ +I
Sbjct: 127 LEPGHEVHSHII 138


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 179/498 (35%), Positives = 282/498 (56%), Gaps = 14/498 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K++H+ ++      + F+ TK+I           +  +F  +   + YLYN++I     N
Sbjct: 5   KKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHN 64

Query: 100 HGHNEALELFSNMY--YSN-------VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
             ++  ++ +  M   Y N       + PD+FT   + K    +   N+G  +H    K 
Sbjct: 65  SMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKF 124

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G    +I  N+L+ MY KC    +  NLFDEM +R   SWN  ISGH   G      R+R
Sbjct: 125 GKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMR---RAR 181

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
            +FD+M  R + +WTA+I+GY + G   +AL +F EMQ+   IEP++ S++SVLP C+ L
Sbjct: 182 ALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAG-IEPDEASIISVLPACAKL 240

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  GK IH F  R  L     +CNALI+MY+KCG +D A ++F D    +D I+WS++
Sbjct: 241 GALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLF-DQMRGRDVISWSTM 299

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           + G   HGK  EA+ ++ +M     KP+ IT VG+LSAC  +G   EGL  ++++   + 
Sbjct: 300 IGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFH 359

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           I+P  E    +VD+LGRAG+L +ALD ++ MP++P   IWG+L+S+   H N E+  +A 
Sbjct: 360 IEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAM 419

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + L +LEP++  NYV LSN+YA   +WD V+ +R +++ + +KK+PGCS I ++     F
Sbjct: 420 EHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEF 479

Query: 511 SVADKAHPCSVSIYEMLD 528
              D + P S  I+ +L+
Sbjct: 480 VSGDDSKPYSKEIFWLLE 497



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            A++   L   A   +L+  K  H      G +    +   LI  Y  CG   Q+  +F+
Sbjct: 227 EASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFD 286

Query: 80  SIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            ++ +DV  ++++I G + NHG   EA+ +F  M  +N+ P+  T   +           
Sbjct: 287 QMRGRDVISWSTMIGG-LANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWE 345

Query: 139 VGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRIS 195
            G L++  ++K  F ++  + +  SL+ +  + G+ S+ L++ ++MP + +   W   +S
Sbjct: 346 EG-LMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLS 404

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
              +  +  + V +    ++++  +   +  + N Y   G  D+
Sbjct: 405 SCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDD 448


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 175/479 (36%), Positives = 280/479 (58%), Gaps = 7/479 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ---SQLVFNSIQHKDVYLYNS 91
           S+    Q+H+ IL  G I + F +++LI + +          +  +F+ I + + Y++N+
Sbjct: 19  SISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNT 78

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I  Y  +     AL +F  M +++V PD +T     K  G    +  G  IHG  +K G
Sbjct: 79  IIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTG 138

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              D+ + N+L+ +Y  CG   +  +L D M +R+V SWN  +S +A  G   L   SRR
Sbjct: 139 LGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELA--SRR 196

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VF +   +NV +W AMI GY   G   E LVLF +MQ    ++P+  +LVSVL  C+ + 
Sbjct: 197 VFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQ-HAGVKPDNCTLVSVLSACAHVG 255

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            LS G+ +H +  +  ++ D  +  AL+DMYSKCGS++ A  VF +S   KD  TW+SI+
Sbjct: 256 ALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVF-NSCLRKDISTWNSII 314

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           SG   HG G  A+ ++++M+  G KP+ +T V VLSAC R+GL++EG E++N +++ + I
Sbjct: 315 SGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGI 374

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           +PT E   C+VD+LGR G L+ A + ++ MP + +  +W +L+ A   HGN E+ +   +
Sbjct: 375 QPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQ 434

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
            L++L P+  S++V LSN+YAS  RW  V E+R  M+ +G++K PGCS I + G  + F
Sbjct: 435 KLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEF 493



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 5/227 (2%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           FV+T L+  Y+ CG   ++  VFNS   KD+  +NS+I+G   +     AL++FS M   
Sbjct: 277 FVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVE 336

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI-GFVVDVILANSLMSMYVKCGKFSE 174
              P++ T   +         L+ G  +  L + + G    +     ++ +  + G   E
Sbjct: 337 GFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEE 396

Query: 175 CLNLFDEMPQRNVG-SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
              L  +MPQ+     W   +    + G+  L  R  +   ++  +   ++  + N Y  
Sbjct: 397 AEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYAS 456

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI---GLSGGK 277
            G   + + +  +M+ +   +    S++ V  T    +   GL  GK
Sbjct: 457 MGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGEGLVSGK 503


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/527 (36%), Positives = 290/527 (55%), Gaps = 16/527 (3%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP--TQSQLVFNSIQH 83
           F Q+S   ++ +  KQ H+  +  G I +P  + +L+    L  Q     ++  F+ I H
Sbjct: 19  FPQISRC-KTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHH 77

Query: 84  KDVYLYNSLINGYVKNHGHN-------EALELFSNMYYSN-VSPDDFTLATISKLSGEIK 135
            + + +N++I     +   +       EAL  FS+M     V P+ FT   + K   ++ 
Sbjct: 78  PNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLA 137

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRI 194
            +  G  +HG  +K+G V D  + ++L+ +YV CG   +   LF +   + NV  WNV I
Sbjct: 138 RIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMI 197

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
            G+   GD      SR +FD M  ++V +W  MI+G  QNG   EA+ +F +MQL D + 
Sbjct: 198 DGYVRMGDLRA---SRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGD-VP 253

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           PN V+LVSVLP  S L  +  GK +H FA + E+  D  L +ALIDMYSKCGS+D A +V
Sbjct: 254 PNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQV 313

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           FE     K+ ITWS+I+ G  +HG+  +A+  + +M   G  P  +  +GVLSAC  +GL
Sbjct: 314 FEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGL 373

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           + EG  IY  ++N   + P  E   C+VD+LGRAG L+ A   I  MPV+P   I  AL+
Sbjct: 374 VEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALL 433

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
            A  MHGN EM +   K L+   P +  +YV+LSN++AS   W+ V ++R  MK+  ++K
Sbjct: 434 GACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRK 493

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            PGCSWI + G  H F V D +HP +  I+ ML+++   +R     P
Sbjct: 494 DPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRP 540


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 169/431 (39%), Positives = 264/431 (61%), Gaps = 5/431 (1%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    V P+ FTL+T+ K    I  L  G   H   IK+GF  DV++  +L+ MY +CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             +  ++FD+M +R+  +WN  I+GHA + D     ++ ++F +M  R+V +WTA+I GY
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMK---KALKLFYEMSERDVVSWTAVIAGY 117

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QNG  DE+L +F +M+ K  ++ ++  + SVL  C+ L  L  G+Q H + ++     D
Sbjct: 118 AQNGYGDESLNVFNQMR-KTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALD 176

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           + + +AL+DMY+K GS++ A +VF D    ++ ++W+SI++G   HG+G++AVLL+ +M+
Sbjct: 177 IVVGSALVDMYAKSGSMEDACQVF-DKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQML 235

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G KP+ I+ VGVLSAC  +GL+NEG   +N +   Y I P      C++D+LGRAG L
Sbjct: 236 QAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCL 295

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
           D A +FI  MPVEP  S+WGAL+ A  +HGN+E+     + L+ +E +    YV LSN+Y
Sbjct: 296 DEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIY 355

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           A++ +WD  A++R +MKDRG+ K PG SWI +    H F   + +HP    I+E L+ L 
Sbjct: 356 AAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLS 415

Query: 532 LIMRGAAASPH 542
             M+ A   P+
Sbjct: 416 RKMKAAGYVPN 426



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 155/358 (43%), Gaps = 70/358 (19%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V    +T +TV   ++  A+  SL+  KQ+H+ I+ +G  S+  V T L+  YA CG   
Sbjct: 6   VKPNQFTLSTV---VKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLE 62

Query: 73  QSQLVFN-------------------------------SIQHKDVYLYNSLINGYVKNHG 101
            +  VF+                                +  +DV  + ++I GY +N  
Sbjct: 63  DAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGY 122

Query: 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
            +E+L +F+ M  + +  D F + ++     ++  L +G   H   ++ GF +D+++ ++
Sbjct: 123 GDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSA 182

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+ MY K G   +   +FD+MPQRN  SWN                              
Sbjct: 183 LVDMYAKSGSMEDACQVFDKMPQRNEVSWN------------------------------ 212

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
               ++I G  Q+G  ++A++LF +M L+  I+PN++S V VL  CS    ++ G+    
Sbjct: 213 ----SIITGCAQHGRGNDAVLLFEQM-LQAGIKPNEISFVGVLSACSHTGLVNEGRGYFN 267

Query: 282 FAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
              +   +  DVS    +ID+  + G LD A           D   W +++    +HG
Sbjct: 268 LMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHG 325


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 171/475 (36%), Positives = 283/475 (59%), Gaps = 45/475 (9%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +IT YA  G  ++++ +F  +  +DV+ + ++++G+V+N   +EA  +F  M   N    
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNE--- 308

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
                                               +  N++++ YV+  +  +   LFD
Sbjct: 309 ------------------------------------VSWNAMIAGYVQSQQIEKARELFD 332

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           +MP RN  SWN  ++G+A  G+   + +++ +FD+M +R+  +W AMI+GY Q+G  +EA
Sbjct: 333 QMPSRNTSSWNTMVTGYAQCGN---IDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEA 389

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF++M+ +D    N+ +L   L +C+ +  L  GKQ+HG  ++          NAL+ 
Sbjct: 390 LHLFIKMK-RDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLA 448

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY KCGS++ A  VFED +  KD ++W+++++GY  HG G EA+ L+  M  +  KPD +
Sbjct: 449 MYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHGFGKEALALFESMK-MTIKPDDV 506

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+VGVLSAC  +GL+++G+E +NS+   Y I    +   C++D+LGRAG+LD AL+ +K+
Sbjct: 507 TLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKS 566

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP  P  + WGAL+ AS +HG++E+ + A + + ++EP+N   YV LSNLYA+S RW  V
Sbjct: 567 MPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREV 626

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            E+R+ M+D+G+KK PG SW+ I  KTH F+V D +HP +  IY  L++L L ++
Sbjct: 627 REMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELK 681



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 203/447 (45%), Gaps = 91/447 (20%)

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           + I+AY   GQ   +  VFN ++ +    YN++I+GY+ N+  + A ++F  M      P
Sbjct: 65  RKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM------P 118

Query: 120 DDFTLATISKLSGEIKDLNV-----------------------GMLIHGLSIKIGFVVDV 156
           D   ++    LSG +K+ N+                       G   +G   +   + D 
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 157 ILA------NSLMSMYVKCGKFSE-----------------CL--------------NLF 179
           +L       N L+S YV+ G+  +                 CL              +LF
Sbjct: 179 MLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLF 238

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D MP R+  SWN+ I+G+A +G   L+  +RR+F+++  R+V+AWTAM++G+VQNG LDE
Sbjct: 239 DRMPVRDKISWNIMITGYAQNG---LLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDE 295

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-----NHDVSL 294
           A  +F EM  K+ +  N +              ++G  Q       +EL     + + S 
Sbjct: 296 ATRIFEEMPEKNEVSWNAM--------------IAGYVQSQQIEKARELFDQMPSRNTSS 341

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            N ++  Y++CG++D A+ +F D    +D I+W++++SGY   G+  EA+ L+ KM   G
Sbjct: 342 WNTMVTGYAQCGNIDQAKILF-DEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG 400

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
              +   +   LS+C     +  G +++  ++     +        ++ M G+ G ++ A
Sbjct: 401 GILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIEEA 459

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHG 441
            D  + +  E     W  +++    HG
Sbjct: 460 FDVFEDI-TEKDIVSWNTMIAGYARHG 485



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 148/344 (43%), Gaps = 55/344 (15%)

Query: 2   ILSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           +L  A   F  +  +N  S  A +  ++Q     ++ +L  Q  S+        N     
Sbjct: 292 MLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR--------NTSSWN 343

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            ++T YA CG   Q++++F+ +  +D   + ++I+GY ++    EAL LF  M       
Sbjct: 344 TMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL 403

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +   LA       EI  L +G  +HG  +K GF    I  N+L++MY KCG   E  ++F
Sbjct: 404 NRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVF 463

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           +++ ++++ SWN                                   MI GY ++G   E
Sbjct: 464 EDITEKDIVSWNT----------------------------------MIAGYARHGFGKE 489

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSL 294
           AL LF  M++   I+P+ V+LV VL  CS    +  G +        + I     H    
Sbjct: 490 ALALFESMKMT--IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKH---- 543

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
              +ID+  + G LD A  + +   F  DA TW +++    +HG
Sbjct: 544 YTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHG 587



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 159/326 (48%), Gaps = 42/326 (12%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D++  N  +S Y++ G+    L++F+ M +R+  ++N  ISG+ S+  F     +R+VF+
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDC---ARKVFE 115

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  R++ +W  M++GYV+NG+L  A  LF +M  KD +  N +              LS
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAM--------------LS 161

Query: 275 GGKQIHGFAIRKELNHDVSLC------NALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           G  Q +GF        D  L       N L+  Y + G ++ ARR+F DS  + + ++W+
Sbjct: 162 GFAQ-NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF-DSKMDWEIVSWN 219

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
            ++ GY    +  +A  L+++M       D I+   +++   ++GL++E   ++  +   
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPV----RDKISWNIMITGYAQNGLLSEARRLFEEL--- 272

Query: 389 YRIKPTTEICACVVDMLG--RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
               P  ++ A    + G  + G LD A    + MP E +   W A+++  V    S+  
Sbjct: 273 ----PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYV---QSQQI 324

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYA 472
           + A +   Q+   N S++ ++   YA
Sbjct: 325 EKARELFDQMPSRNTSSWNTMVTGYA 350



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 3/218 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+L KQ H +++  G  +       L+  Y  CG   ++  VF  I  KD+  +N++I 
Sbjct: 420 ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIA 479

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFV 153
           GY ++    EAL LF +M  + + PDD TL  +         ++ GM   + +    G  
Sbjct: 480 GYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGIT 538

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRV 212
            +      ++ +  + G+  E LNL   MP   +  +W   +      GD  L  ++   
Sbjct: 539 ANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEK 598

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
             +M+  N   +  + N Y  +G   E   +  +M+ K
Sbjct: 599 VFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDK 636


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/523 (35%), Positives = 292/523 (55%), Gaps = 12/523 (2%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A    L +  Q H+ I    ++ + ++ + L+  Y+ CG    +Q  F+ +  +++
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNI 217

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NSLI  Y +N    +ALE+F  M  + V PD+ TLA++         +  G+ IH  
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHAR 277

Query: 147 SIKIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
            +K   +  D++L N+L+ MY KC + +E   +FD MP RNV S    + G+A +     
Sbjct: 278 VVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAAS--- 334

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  +R +F  M  +NV +W A+I GY QNG+ +EA+ LFL ++ ++ I P   +  ++L 
Sbjct: 335 VKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLK-RESIWPTHYTFGNLLN 393

Query: 266 TCSSLIGLSGGKQIH------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            C++L  L  G+Q H      GF  +     D+ + N+LIDMY KCG ++    VFE   
Sbjct: 394 ACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFE-RM 452

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D ++W++++ GY  +G G  A+ ++ KM+  G KPD +T++GVLSAC  +GL+ EG 
Sbjct: 453 VERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGR 512

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             ++S+     + P  +   C+VD+LGRAG LD A D I+TMP++P   +WG+L++A  +
Sbjct: 513 RYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKV 572

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           HGN E+     + L++++P N   YV LSN+YA   RW  V  +R  M+ RG+ K PGCS
Sbjct: 573 HGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCS 632

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           WI I  + H F V DK HP    I+ +L  L   M+ A   P 
Sbjct: 633 WIEIQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQMKWAGYVPE 675



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 149/281 (53%), Gaps = 5/281 (1%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           IH   IK  F  ++ + N L+  Y KCG F +   +FD MPQRN  S+N  +S     G 
Sbjct: 41  IHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGK 100

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                 +  VF  M   +  +W AM++G+ Q+   +EAL  F++M  +D +  N+ S  S
Sbjct: 101 LD---EAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFV-LNEYSFGS 156

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L  C+ L  L+ G QIH    +     DV + +AL+DMYSKCG + CA+R F D    +
Sbjct: 157 ALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAF-DGMAVR 215

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           + ++W+S+++ Y  +G   +A+ ++  M+  G +PD IT+  V+SAC     I EGL+I+
Sbjct: 216 NIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIH 275

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
             V+   + +    +   +VDM  +  +++ A      MP+
Sbjct: 276 ARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 203/470 (43%), Gaps = 103/470 (21%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY--------- 89
            ++ H++I+     S  F+  +L+ AY  CG    ++ VF+ +  ++ + Y         
Sbjct: 38  ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97

Query: 90  ----------------------NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
                                 N++++G+ ++    EAL  F +M+  +   ++++  + 
Sbjct: 98  FGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSA 157

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
                 + DLN+G+ IH L  K  +++DV + ++L+ MY KCG  +     FD M  RN+
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNI 217

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
            SWN                                  ++I  Y QNG   +AL +F+ M
Sbjct: 218 VSWN----------------------------------SLITCYEQNGPAGKALEVFV-M 242

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCG 306
            + + +EP++++L SV+  C+S   +  G QIH   ++++   +D+ L NAL+DMY+KC 
Sbjct: 243 MMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCR 302

Query: 307 SLDCARRVFE------------------------------DSSFNKDAITWSSIVSGYGL 336
            ++ AR VF+                               +   K+ ++W+++++GY  
Sbjct: 303 RVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQ 362

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRIKPTT 395
           +G+  EAV L+  +      P   T   +L+AC     +  G + +  ++ + +  +   
Sbjct: 363 NGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGE 422

Query: 396 E----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           E    +   ++DM  + G ++      + M VE     W A++     +G
Sbjct: 423 ESDIFVGNSLIDMYMKCGMVEDGCLVFERM-VERDVVSWNAMIVGYAQNG 471



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQIL------SLGHISNPFVSTKLITAYALCGQPT 72
           T  T  + L   A    LKL +Q+H+QIL        G  S+ FV   LI  Y  CG   
Sbjct: 384 THYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVE 443

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
              LVF  +  +DV  +N++I GY +N     ALE+F  M  S   PD  T+
Sbjct: 444 DGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTM 495


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 176/509 (34%), Positives = 285/509 (55%), Gaps = 4/509 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T     + ++  + L L    H  ++     S+ F+   LI  Y   G P  +  VF ++
Sbjct: 175 TFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNM 234

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KDV  +N++IN +      ++AL LF  M   +V P+  T+ ++     +  DL  G 
Sbjct: 235 PGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGR 294

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            I       GF   +IL N+++ MYVKCG  ++  +LF++M ++++ SW   + GHA  G
Sbjct: 295 WICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLG 354

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           ++     +  +FD M  +   AW A+I+ Y QNG    AL LF EMQL    +P++V+L+
Sbjct: 355 NYD---EAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLI 411

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
             L   + L  +  G  IH +  + ++N +  L  +L+DMY+KCG+L+ A  VF      
Sbjct: 412 CALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVE-R 470

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD   WS+++    ++G+G  A+ L++ M+    KP+ +T   +L AC  +GL+NEG ++
Sbjct: 471 KDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQL 530

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  +   Y I P  +   CVVD+ GRAG L++A  FI+ MP+ P+ ++WGAL+ A   HG
Sbjct: 531 FEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHG 590

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ +LAY++L++LEP N   +V LSN+YA +  W+ V+ LR +M+D  +KK P CS I
Sbjct: 591 NVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSI 650

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            ++G  H F V D +HP S  IY  LD++
Sbjct: 651 DVNGIVHEFLVGDNSHPFSQKIYSKLDEI 679



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 223/478 (46%), Gaps = 75/478 (15%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYAL--CGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ H+ +L      +P+ ++KL+TAYA+  C     ++ VFN I   ++Y +N+LI GY 
Sbjct: 89  KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYA 148

Query: 98  KNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            +    ++  +F +M +S +  P+ FT   + K +  +K L++G ++HG+ IK     D+
Sbjct: 149 SSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDL 208

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            + NSL++ Y   G       +F  MP ++V SWN                         
Sbjct: 209 FILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWN------------------------- 243

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
                    AMIN +   G  D+AL+LF EM++KD ++PN +++VSVL  C+  I L  G
Sbjct: 244 ---------AMINAFALGGLPDKALLLFQEMEMKD-VKPNVITMVSVLSACAKKIDLEFG 293

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS------- 329
           + I  +         + L NA++DMY KCG ++ A+ +F   S  KD ++W++       
Sbjct: 294 RWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMS-EKDIVSWTTMLDGHAK 352

Query: 330 ------------------------IVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVG 364
                                   ++S Y  +GK   A+ L+++M +   +KPD +T++ 
Sbjct: 353 LGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLIC 412

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
            L A  + G I+ G  I+   I  + I     +   ++DM  + G L++A++    +   
Sbjct: 413 ALCASAQLGAIDFGHWIH-VYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVE-R 470

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482
               +W A++ A  M+G  +     + S+  LE     N V+ +N+  +      V E
Sbjct: 471 KDVYVWSAMIGALAMYGQGKAALDLFSSM--LEAYIKPNAVTFTNILCACNHAGLVNE 526


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 181/511 (35%), Positives = 294/511 (57%), Gaps = 6/511 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  A   S    +  H+ ++  G   N  V+T L+TAYA  G    ++ + +  
Sbjct: 45  TFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSER 104

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE-IKDLNVG 140
           +     ++N+LI+G+ +     EA   F +M  +  +P   T  ++    G+   D+ +G
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLG 164

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
           M +HG  +  G + D+ + N+L+ MY +C        LFD M  R+V SW   +SG    
Sbjct: 165 MQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRL 224

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           G    V  +R +F +M  R+  +WTAMI+GYVQ     EAL +F EMQ  + +  ++ ++
Sbjct: 225 GR---VDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSN-VSADEFTM 280

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           VSV+  C+ L  L  G+ +  +  R+ +  D  + NALIDMYSKCGS++ A  VF+D   
Sbjct: 281 VSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMH- 339

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           ++D  TW++I+ G  ++G G EA+ ++++M+ +   PD +T +GVL+AC  +GL+++G E
Sbjct: 340 HRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGRE 399

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            + S+  TY I P      C++D+ GRAG++  ALD I  MP+ P+ +IWG L++A  +H
Sbjct: 400 FFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVH 459

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
           GNSE+ +L  + L+Q++PEN + Y  LSN+YA   RW+ V  LR  + ++G+KK PGCS 
Sbjct: 460 GNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSL 519

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           I ++G  H F   D++HP S  IY  L+ +I
Sbjct: 520 IEMNGIIHEFVAGDQSHPMSKEIYCKLESII 550


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 183/519 (35%), Positives = 293/519 (56%), Gaps = 7/519 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  A  R       + + +L LG  S+ FV        ++ G    ++ +F+  
Sbjct: 127 TFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRS 186

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN--VSPDDFTLATISKLSGEIKDLNV 139
             +D+  +N+LI GYV+     EALELF  M   +  V PD+ T+       G+++DL +
Sbjct: 187 PVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLEL 246

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG     G    V L N+LM MY+KCG      ++F+ +  R V SW   I G A 
Sbjct: 247 GRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAK 306

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
              F L+  +R+VFD+M  R+V+ W A++ GYVQ     EAL LF EMQ +  + P++++
Sbjct: 307 ---FGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQ-EASVVPDEIT 362

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +V++L  CS L  L  G  +H +  +  L   V+L  +LIDMY+KCG+++ A  +F++  
Sbjct: 363 MVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIP 422

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             K+A+TW++++ G   HG  +EA+  +  M+ LG KPD IT +GVLSAC  +GL+ EG 
Sbjct: 423 -EKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGR 481

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           E ++ +   Y ++   +  +C++D+LGRAG LD A   + TMP+EP   +WGA+  A  M
Sbjct: 482 EFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRM 541

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
            GN  + + A   L++++P +   YV L+N+YA +       ++R MM+  G++K PGCS
Sbjct: 542 QGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCS 601

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
            I ++G  H F V DK+H  S +IY+ L ++ L ++  A
Sbjct: 602 CIELNGVVHEFIVKDKSHMDSHAIYDCLHEITLQIKHTA 640



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 171/393 (43%), Gaps = 71/393 (18%)

Query: 99  NHGH---NEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            HGH      L L+  +  S  + PD  T   + K    +++   G       +++G   
Sbjct: 99  RHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDS 158

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           DV + N+        G   +   LFD  P R++ SWN  I                    
Sbjct: 159 DVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLI-------------------- 198

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGL 273
                          GYV+ G+  EAL LF  M  +D  + P++V++++ +  C  +  L
Sbjct: 199 --------------GGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDL 244

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE----------------- 316
             G+++HGF     ++  V L NAL+DMY KCGSL+ A+ VFE                 
Sbjct: 245 ELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGF 304

Query: 317 -------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
                        D    +D   W+++++GY    +  EA+ L+++M      PD IT+V
Sbjct: 305 AKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMV 364

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            +L+AC + G +  G+ ++   I  +R+  +  +   ++DM  + G +++A+   K +P 
Sbjct: 365 NLLTACSQLGALEMGMWVHR-YIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIP- 422

Query: 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           E +   W A++     HG++      ++++I+L
Sbjct: 423 EKNALTWTAMICGLANHGHANEAIEHFRTMIEL 455


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 187/550 (34%), Positives = 305/550 (55%), Gaps = 44/550 (8%)

Query: 31  ATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYN 90
           A+ R+L   +Q H+   + G +++  V++ L   Y  C +   ++ +F+ +  +DV +++
Sbjct: 115 ASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWS 174

Query: 91  SLINGYVK----------------------------------NHG-HNEALELFSNMYYS 115
           ++I GY +                                  N+G ++EA+ +F  M   
Sbjct: 175 AMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQ 234

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
              PD  T++ +    G ++D+ VG  +HG  IK G   D  + ++++ MY KCG   E 
Sbjct: 235 GFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEM 294

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWTAMINGY 231
             +FDE+ +  +GS N  ++G + +G   +V  +  VF++ K +    NV  WT++I   
Sbjct: 295 SRVFDEVEEMEIGSLNAFLTGLSRNG---MVDTALEVFNKFKDQKMELNVVTWTSIIASC 351

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QNG   EAL LF +MQ    +EPN V++ S++P C ++  L  GK+IH F++R+ +  D
Sbjct: 352 SQNGKDLEALELFRDMQAYG-VEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDD 410

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           V + +ALIDMY+KCG +  ARR F+  S   + ++W++++ GY +HGK  E + +++ M+
Sbjct: 411 VYVGSALIDMYAKCGRIQLARRCFDKMS-ALNLVSWNAVMKGYAMHGKAKETMEMFHMML 469

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G KPD++T   VLSAC ++GL  EG   YNS+   + I+P  E  AC+V +L R G+L
Sbjct: 470 QSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKL 529

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
           + A   IK MP EP   +WGAL+S+  +H N  + ++A + L  LEP NP NY+ LSN+Y
Sbjct: 530 EEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIY 589

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           AS   WD    +R +MK +GL+K+PG SWI +  K H     D++HP    I E LD L 
Sbjct: 590 ASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLN 649

Query: 532 LIMRGAAASP 541
           + M+ +   P
Sbjct: 650 MQMKKSGYLP 659



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 226/468 (48%), Gaps = 47/468 (10%)

Query: 29  VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC---GQPTQSQLVFNSIQHKD 85
           +S++  SL   +Q+H+ IL L   S+  ++T L++ YA       P  S  + + + H  
Sbjct: 9   LSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPT 68

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           ++ ++SLI+ + ++H     L  FS+++   + PD F L +  K    ++ L+ G  +H 
Sbjct: 69  LFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHA 128

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
            +   GF+ D I+A+SL  MY+KC +  +   LFD MP R+V  W+  I+G++  G   L
Sbjct: 129 FAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLG---L 185

Query: 206 VVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           V  ++ +F +M+      N+ +W  M+ G+  NG  DEA+ +F  M L     P+  ++ 
Sbjct: 186 VEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMF-RMMLVQGFWPDGSTVS 244

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---- 317
            VLP    L  +  G Q+HG+ I++ L  D  + +A++DMY KCG +    RVF++    
Sbjct: 245 CVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEM 304

Query: 318 ----------------------SSFNK--------DAITWSSIVSGYGLHGKGHEAVLLY 347
                                   FNK        + +TW+SI++    +GK  EA+ L+
Sbjct: 305 EIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELF 364

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
             M   G +P+ +TI  ++ ACG    +  G EI+   +    I     + + ++DM  +
Sbjct: 365 RDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRR-GIFDDVYVGSALIDMYAK 423

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            G++  A      M      S W A++    MHG ++     +  ++Q
Sbjct: 424 CGRIQLARRCFDKMSALNLVS-WNAVMKGYAMHGKAKETMEMFHMMLQ 470


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 186/543 (34%), Positives = 313/543 (57%), Gaps = 38/543 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV + L   A +++L + ++ HS ++ LG  S   V+T L+  YA CG P  +++VF+ +
Sbjct: 144 TVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRM 203

Query: 82  QHKDVYLYNSLINGYVKN------------------------------HGHN-EALELFS 110
             K++  +N+LI+ Y+++                               G+N EAL +FS
Sbjct: 204 TVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFS 263

Query: 111 NMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
            M    ++ PD+FTLA+I      ++ LN+G  IH   ++        + N+L+SMY K 
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKS 323

Query: 170 G--KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           G  + +  +   +     N+ ++   + G+   G+   V  +R +F++++ R+V AWTAM
Sbjct: 324 GGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGN---VKPAREIFNKLRDRDVVAWTAM 380

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I GYVQNG  ++AL LF  + + +  EPN  +L ++L   SSL  L  GKQIH  AI+  
Sbjct: 381 IVGYVQNGLWNDALELF-RLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAG 439

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
            +   S+ NALI MY+K G+++ A+RVF+  +  K+ ++W+S++     HG G EA+ L+
Sbjct: 440 ESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLF 499

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            +M+ +G KPD IT VGVLSAC   GL+ +G + YN +   + I+PT    AC++D+ GR
Sbjct: 500 ERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGR 559

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           AG L  A  FI++MP+EP    WG+L+++  +H N+++  +A + L+ ++P N   Y++L
Sbjct: 560 AGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLAL 619

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           +N+Y++  +W+  A+ R +MKDRG++K  G SWI I  + H F V D  HP    IY+++
Sbjct: 620 ANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLM 679

Query: 528 DDL 530
            ++
Sbjct: 680 AEI 682



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 218/486 (44%), Gaps = 67/486 (13%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           +S    H LQ S   +     +  H QI+  G     ++   L+T YA  G    +  VF
Sbjct: 9   SSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF 68

Query: 79  NSIQHKDVYLYNSLINGYVKNH-------------------------GHNE------ALE 107
           + +  K  + +N+LI+GY K                           G+N+      A+ 
Sbjct: 69  DEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           +F+ M    V P  FT++ +       + L++G  IH   +K+G    V +A SL++MY 
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYA 188

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           KCG       +FD M  +N+ +WN  IS +  SG F L       F++M  R++ +W +M
Sbjct: 189 KCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQ---FEKMPDRDIVSWNSM 245

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I+GY Q G   EAL +F +M  +  ++P+  +L S+L  C++L  L+ GKQIH + +R E
Sbjct: 246 ISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAE 305

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSS---------------------------- 319
                ++ NALI MY+K G ++ AR + E +                             
Sbjct: 306 TETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREI 365

Query: 320 FNK----DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
           FNK    D + W++++ GY  +G  ++A+ L+  MV  G +P+  T+  +LS      ++
Sbjct: 366 FNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTIL 425

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
             G +I+ S I       T  +   ++ M  + G ++ A         +     W +++ 
Sbjct: 426 EHGKQIHASAIKAGE-SSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIM 484

Query: 436 ASVMHG 441
           A   HG
Sbjct: 485 ALAQHG 490



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 2/166 (1%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L VS++   L+  KQ H+  +  G  S P V+  LI  YA  G    ++ VF+
Sbjct: 409 SYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD 468

Query: 80  SIQ-HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
                K++  + S+I    ++    EA+ LF  M    + PD  T   +      +  + 
Sbjct: 469 LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVE 528

Query: 139 VGMLIHGLSIKIGFVVDVILANSLM-SMYVKCGKFSECLNLFDEMP 183
            G   + +  ++  +   +   + M  +Y + G   E     + MP
Sbjct: 529 QGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMP 574


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  337 bits (865), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 170/475 (35%), Positives = 282/475 (59%), Gaps = 45/475 (9%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +IT YA  G  ++++ +F  +  +DV+ + ++++G+V+N   +EA  +F  M   N    
Sbjct: 252 MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNE--- 308

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
                                               +  N++++ YV+  +  +   LFD
Sbjct: 309 ------------------------------------VSWNAMIAGYVQSQQIEKARELFD 332

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           +MP RN  SWN  ++G+A  G+   + +++ +FD+M +R+  +W AMI+GY Q+G  +EA
Sbjct: 333 QMPSRNTSSWNTMVTGYAQCGN---IDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEA 389

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF++M+ +D    N+ +L   L +C+ +  L  GKQ+HG  ++          NAL+ 
Sbjct: 390 LHLFIKMK-RDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLA 448

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY KCGS++ A  VFED +  KD ++W+++++GY  HG G EA+ L+  M  +  KPD +
Sbjct: 449 MYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHGFGKEALALFESMK-MTIKPDDV 506

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+VGVLSAC  +G +++G+E +NS+   Y I    +   C++D+LGRAG+LD AL+ +K+
Sbjct: 507 TLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKS 566

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP  P  + WGAL+ AS +HG++E+ + A + + ++EP+N   YV LSNLYA+S RW  V
Sbjct: 567 MPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREV 626

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            E+R+ M+D+G+KK PG SW+ I  KTH F+V D +HP +  IY  L++L L ++
Sbjct: 627 REMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELK 681



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 203/447 (45%), Gaps = 91/447 (20%)

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           + I+AY   GQ   +  VFN ++ +    YN++I+GY+ N+  + A ++F  M      P
Sbjct: 65  RKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM------P 118

Query: 120 DDFTLATISKLSGEIKDLNV-----------------------GMLIHGLSIKIGFVVDV 156
           D   ++    LSG +K+ N+                       G   +G   +   + D 
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 157 ILA------NSLMSMYVKCGKFSE-----------------CL--------------NLF 179
           +L       N L+S YV+ G+  +                 CL              +LF
Sbjct: 179 MLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLF 238

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D MP R+  SWN+ I+G+A +G   L+  +RR+F+++  R+V+AWTAM++G+VQNG LDE
Sbjct: 239 DRMPVRDKISWNIMITGYAQNG---LLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDE 295

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-----NHDVSL 294
           A  +F EM  K+ +  N +              ++G  Q       +EL     + + S 
Sbjct: 296 ATRIFEEMPEKNEVSWNAM--------------IAGYVQSQQIEKARELFDQMPSRNTSS 341

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            N ++  Y++CG++D A+ +F D    +D I+W++++SGY   G+  EA+ L+ KM   G
Sbjct: 342 WNTMVTGYAQCGNIDQAKILF-DEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG 400

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
              +   +   LS+C     +  G +++  ++     +        ++ M G+ G ++ A
Sbjct: 401 GILNRSALACALSSCAEIAALELGKQLHGRLVKA-GFQTGYIAGNALLAMYGKCGSIEEA 459

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHG 441
            D  + +  E     W  +++    HG
Sbjct: 460 FDVFEDI-TEKDIVSWNTMIAGYARHG 485



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 148/344 (43%), Gaps = 55/344 (15%)

Query: 2   ILSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           +L  A   F  +  +N  S  A +  ++Q     ++ +L  Q  S+        N     
Sbjct: 292 MLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR--------NTSSWN 343

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            ++T YA CG   Q++++F+ +  +D   + ++I+GY ++    EAL LF  M       
Sbjct: 344 TMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGIL 403

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +   LA       EI  L +G  +HG  +K GF    I  N+L++MY KCG   E  ++F
Sbjct: 404 NRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVF 463

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           +++ ++++ SWN                                   MI GY ++G   E
Sbjct: 464 EDITEKDIVSWNT----------------------------------MIAGYARHGFGKE 489

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSL 294
           AL LF  M++   I+P+ V+LV VL  CS    +  G +        + I     H    
Sbjct: 490 ALALFESMKMT--IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKH---- 543

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
              +ID+  + G LD A  + +   F  DA TW +++    +HG
Sbjct: 544 YTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHG 587



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 159/326 (48%), Gaps = 42/326 (12%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D++  N  +S Y++ G+    L++F+ M +R+  ++N  ISG+ S+  F     +R+VF+
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDC---ARKVFE 115

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  R++ +W  M++GYV+NG+L  A  LF +M  KD +  N +              LS
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAM--------------LS 161

Query: 275 GGKQIHGFAIRKELNHDVSLC------NALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           G  Q +GF        D  L       N L+  Y + G ++ ARR+F DS  + + ++W+
Sbjct: 162 GFAQ-NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLF-DSKMDWEIVSWN 219

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
            ++ GY    +  +A  L+++M       D I+   +++   ++GL++E   ++  +   
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPV----RDKISWNIMITGYAQNGLLSEARRLFEEL--- 272

Query: 389 YRIKPTTEICACVVDMLG--RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
               P  ++ A    + G  + G LD A    + MP E +   W A+++  V    S+  
Sbjct: 273 ----PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYV---QSQQI 324

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYA 472
           + A +   Q+   N S++ ++   YA
Sbjct: 325 EKARELFDQMPSRNTSSWNTMVTGYA 350



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 3/218 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+L KQ H +++  G  +       L+  Y  CG   ++  VF  I  KD+  +N++I 
Sbjct: 420 ALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIA 479

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFV 153
           GY ++    EAL LF +M  + + PDD TL  +         ++ GM   + +    G  
Sbjct: 480 GYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGIT 538

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRV 212
            +      ++ +  + G+  E LNL   MP   +  +W   +      GD  L  ++   
Sbjct: 539 ANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEK 598

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
             +M+  N   +  + N Y  +G   E   +  +M+ K
Sbjct: 599 VFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDK 636


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 184/520 (35%), Positives = 281/520 (54%), Gaps = 35/520 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A    LKL K  H   +     S+    T L++ YA CG  T +   FN +
Sbjct: 432 TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D+  +NSLINGY +      A+++F  +  S ++PD  T+  +      + DL+ G 
Sbjct: 492 SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IHGL +K+GF  D  + N+L+ MY KCG       LF++                    
Sbjct: 552 CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKT------------------- 592

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           DF+              ++   W  +I  Y+QNG   EA+  F +M+L++   PN V+ V
Sbjct: 593 DFT--------------KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLEN-FHPNSVTFV 637

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVLP  + L     G   H   I+     +  + N+LIDMY+KCG LD + ++F +   +
Sbjct: 638 SVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD-H 696

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD ++W++++SGY +HG G  A+ L++ M     + D ++ V VLSAC  +GL+ EG +I
Sbjct: 697 KDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKI 756

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++S+ + Y IKP  E  AC+VD+LGRAG  D  L FIK MPVEP   +WGAL+ +  MH 
Sbjct: 757 FHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHS 816

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N ++ ++A   L++LEP NP+++V LS++YA S RW    + R+ M D GLKK+PGCSW+
Sbjct: 817 NVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWV 876

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            +  K H F V DK+HP   S++ + + L+  M      P
Sbjct: 877 ELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVP 916



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 205/420 (48%), Gaps = 42/420 (10%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           VS  LI  Y+ CG    ++ VF+ +  +D   + +++ GY  N    E LELF  M   N
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           V  +  +  +    + E  DL  G  IHG +++     D+++A  LM MY KCG+     
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGE----- 379

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
                                          +++++F  ++ R++ AW+A+I   VQ G 
Sbjct: 380 -----------------------------TEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
            +EAL LF EMQ   +++PN+V+L+S+LP C+ L  L  GK IH F ++ +++ D+S   
Sbjct: 411 PEEALSLFQEMQ-NQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGT 469

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           AL+ MY+KCG    A   F   S ++D +TW+S+++GY   G  + A+ ++ K+      
Sbjct: 470 ALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN 528

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD  T+VGV+ AC     +++G  I+  ++     +    +   ++DM  + G L  A  
Sbjct: 529 PDAGTMVGVVPACALLNDLDQGTCIHGLIVK-LGFESDCHVKNALIDMYAKCGSLPSAEF 587

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLSNLYASS 474
                        W  +++A + +G+++    A  S  Q+  EN  P++   +S L A++
Sbjct: 588 LFNKTDFTKDEVTWNVIIAAYMQNGHAKE---AISSFHQMRLENFHPNSVTFVSVLPAAA 644



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 226/525 (43%), Gaps = 75/525 (14%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           +++A + F  ++S  YT+    H+ ++ ++ + L    Q H+QI+  G   +  + T LI
Sbjct: 14  IATAASEFPSLSSSTYTNYL--HYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI-THLI 70

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
             Y+L  +   ++ VF+S  +    L+NS+I  Y ++  +NEALE++  M    + PD +
Sbjct: 71  NLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKY 130

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS--------- 173
           T   + K      +L  G+  HG   + G   DV +   L+ MY K G            
Sbjct: 131 TFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM 190

Query: 174 ----------------------ECLNLFDEMPQRNVGSWNVR------------------ 193
                                 E ++ F  M    V   +V                   
Sbjct: 191 PKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCR 250

Query: 194 -ISGHASSGDFSLVVR---------------SRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
            I G+    DFS  V                +RRVFDQM  ++  +W  M+ GY  NG  
Sbjct: 251 SIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCF 310

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
            E L LF +M+L + +  NKVS VS     +  I L  GK+IHG A+++ ++ D+ +   
Sbjct: 311 VEVLELFDKMKLGN-VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATP 369

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           L+ MY+KCG  + A+++F      +D + WS+I++     G   EA+ L+ +M     KP
Sbjct: 370 LMVMYAKCGETEKAKQLFWGLQ-GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKP 428

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           + +T++ +L AC    L+  G  I+   +    +         +V M  + G    AL  
Sbjct: 429 NRVTLMSILPACADLSLLKLGKSIHCFTVKA-DMDSDLSTGTALVSMYAKCGFFTAALTT 487

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENP 461
              M      + W +L++     G+     D+ YK  ++L   NP
Sbjct: 488 FNRMSSRDIVT-WNSLINGYAQIGDPYNAIDMFYK--LRLSAINP 529



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 6/194 (3%)

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           QIH   I     H  S+ + LI++YS     D AR VF DS+ N   I W+S++  Y   
Sbjct: 50  QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVF-DSTPNPSRILWNSMIRAYTRS 107

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
            + +EA+ +Y  MV  G +PD  T   VL AC  +  + EG+  ++  I+   ++    I
Sbjct: 108 KQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV-WFHGEIDRRGLERDVFI 166

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            A +VDM  + G L RA +    MP     + W A++ A +       + + +   +QL 
Sbjct: 167 GAGLVDMYSKMGDLKRAREVFDKMPKRDVVA-WNAMI-AGLSQSEDPCEAVDFFRSMQLV 224

Query: 458 PENPSNYVSLSNLY 471
              PS+ VSL NL+
Sbjct: 225 GVEPSS-VSLLNLF 237


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  337 bits (864), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 182/542 (33%), Positives = 298/542 (54%), Gaps = 44/542 (8%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYLY 89
           SL+   Q H  +L  GH  + +VS  L+  YA    P  S       VF+SI + +V+++
Sbjct: 45  SLQYLTQLHGLVLRSGHFQDHYVSGALLKCYA---NPHFSNFDFALKVFSSIPNPNVFIW 101

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N +I G ++N+   +A+  +  M   +  P+ FT  T+ K     + +  G  IHG  +K
Sbjct: 102 NIVIKGCLENNKLFKAIYFYGRMVI-DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVK 160

Query: 150 IGF------------------------------VVDVILANSLMSMYVKCGKFSECLNLF 179
            G                                 DV+  N+++  Y+KCG       LF
Sbjct: 161 HGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLF 220

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
            +MP +N+GSWNV I+G A  G+      +R++FD+M  R+  +W++M++GY+  G   E
Sbjct: 221 AQMPVKNIGSWNVMINGLAKGGNLG---DARKLFDEMSERDEISWSSMVDGYISAGRYKE 277

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           AL +F +MQ ++   P +  L SVL  CS++  +  G+ +H +  R  +  D  L  AL+
Sbjct: 278 ALEIFQQMQ-REETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL 336

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           DMY+KCG LD    VFE+    ++  TW++++ G  +HG+  +A+ L++K+     KP+ 
Sbjct: 337 DMYAKCGRLDMGWEVFEEMK-EREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNG 395

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           IT+VGVL+AC  +G +++GL I+ ++   Y + P  E   C+VD+LGR+G    A D I 
Sbjct: 396 ITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLIN 455

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
           +MP++P+ ++WGAL+ A  +HGN ++ +   K L++LEP+N   YV LSN+YA   R+D 
Sbjct: 456 SMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDD 515

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
           V+++R +MKDRG+K  PG S + ++G  H F + D +HP    IY  L  +   ++ A  
Sbjct: 516 VSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH 575

Query: 540 SP 541
           SP
Sbjct: 576 SP 577


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/543 (34%), Positives = 313/543 (57%), Gaps = 38/543 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV + L   A +++L + ++ HS ++ LG  S   V+T L+  YA CG P  +++VF+ +
Sbjct: 144 TVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRM 203

Query: 82  QHKDVYLYNSLINGYVKN------------------------------HGHN-EALELFS 110
             K++  +N+LI+ Y+++                               G+N EAL +FS
Sbjct: 204 TVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFS 263

Query: 111 NMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
            M    ++ PD+FTLA+I      ++ LN+G  IH   ++        + N+L+SMY K 
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKS 323

Query: 170 G--KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           G  + +  +   +     N+ ++   + G+   G+   V  +R +F++++ R+V AWTAM
Sbjct: 324 GGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGN---VKPAREIFNKLRDRDVVAWTAM 380

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I GYVQNG  ++AL LF  + + +  EPN  +L ++L   SSL  L  GKQIH  AI+  
Sbjct: 381 IVGYVQNGLWNDALELF-RLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAG 439

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
            +   S+ NALI MY+K G+++ A+RVF+  +  K+ ++W+S++     HG G EA+ L+
Sbjct: 440 ESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLF 499

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            +M+ +G KPD IT VGVLSAC   GL+ +G + YN +   + I+PT    AC++D+ GR
Sbjct: 500 ERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGR 559

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           AG L  A  FI++MP+EP    WG+L+++  +H N+++  +A + L+ ++P N   Y++L
Sbjct: 560 AGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLAL 619

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           +N+Y++  +W+  A+ R +MKDRG++K  G SWI I  + H F V D  HP    IY+++
Sbjct: 620 ANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLM 679

Query: 528 DDL 530
            ++
Sbjct: 680 AEI 682



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 219/486 (45%), Gaps = 67/486 (13%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           +S    H LQ S   +     +  H QI+  G     ++   L+T YA  G    +  VF
Sbjct: 9   SSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF 68

Query: 79  NSIQHKDVYLYNSLINGYVKNH-------------------------GHNE------ALE 107
           + +  K  + +N+LI+GY K                           G+N+      A+ 
Sbjct: 69  DEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           +F+ M    V P  FT++ +       + L++G  IH   +K+G    V +A SL++MY 
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYA 188

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           KCG       +FD M  +N+ +WN  IS +  SG F L       F++M  R++ +W +M
Sbjct: 189 KCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQ---FEKMPDRDIVSWNSM 245

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I+GY Q G   EALV+F +M  +  ++P+  +L S+L  C++L  L+ GKQIH + +R E
Sbjct: 246 ISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAE 305

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSS---------------------------- 319
                ++ NALI MY+K G ++ AR + E +                             
Sbjct: 306 TETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREI 365

Query: 320 FNK----DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
           FNK    D + W++++ GY  +G  ++A+ L+  MV  G +P+  T+  +LS      ++
Sbjct: 366 FNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTIL 425

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
             G +I+ S I       T  +   ++ M  + G ++ A         +     W +++ 
Sbjct: 426 EHGKQIHASAIKAGE-SSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIM 484

Query: 436 ASVMHG 441
           A   HG
Sbjct: 485 ALAQHG 490



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 2/166 (1%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L VS++   L+  KQ H+  +  G  S P V+  LI  YA  G    ++ VF+
Sbjct: 409 SYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD 468

Query: 80  SIQ-HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
                K++  + S+I    ++    EA+ LF  M    + PD  T   +      +  + 
Sbjct: 469 LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVE 528

Query: 139 VGMLIHGLSIKIGFVVDVILANSLM-SMYVKCGKFSECLNLFDEMP 183
            G   + +  ++  +   +   + M  +Y + G   E     + MP
Sbjct: 529 QGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMP 574


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/507 (34%), Positives = 293/507 (57%), Gaps = 8/507 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK---DVYLYNSLINGYVKN 99
           H+ ++  G   N  V++ L+  YA  G    ++ + ++   +      ++N+LI+G+ ++
Sbjct: 42  HAHVVKFGMELNAHVASSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRS 101

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
                +   F +M  + V P   T  T+    G+ K + +GM +H   +  G + D+ + 
Sbjct: 102 RQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVG 161

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+L+ MY +C +      LF+ M  RN  SW   ISG    G    V ++R +FD M  R
Sbjct: 162 NALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQ---VDQARTLFDCMPER 218

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           +  +WTAMI+GYVQ G   EAL +F EMQ   ++  ++ ++VSV+  C+ L  L  G+  
Sbjct: 219 DTVSWTAMIDGYVQAGQFREALEMFREMQFS-KVRADEFTMVSVVTACAQLGALETGEWA 277

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
             +  R  +  D  + NAL+DMYSKCGS+  A  VF++  + +D  TW++++ G  ++G 
Sbjct: 278 RIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEM-YIRDKFTWTAVILGLAVNGH 336

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           G EA+ ++ +M+ +   PD +T +GVL+AC  +GL+++G + + S+  +Y I P      
Sbjct: 337 GEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFG 396

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C++D+LGRAG+L  AL+ I  MP+ P+ +IWG L++A  +HGNSE+  LA + L++L+ E
Sbjct: 397 CLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTE 456

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           N   Y+ LSNLYA S RW+ V  LR ++ ++G+KK PGCS I ++G  H F   D++HP 
Sbjct: 457 NGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPM 516

Query: 520 SVSIYEMLDDLILIMRGAAASPHLGKM 546
           S  IY  LD ++  ++ A   P L ++
Sbjct: 517 SKEIYSKLDKVLTDLKDAGYVPDLTEI 543



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 164/397 (41%), Gaps = 72/397 (18%)

Query: 106 LELFSNMYYSNVSPDDFTLATISK-LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           L ++  M      PD +T   + K ++   +   VG  +H   +K G  ++  +A+SL+ 
Sbjct: 3   LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVL 62

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGS---WNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           MY   G  +    L D  P R   +   WN  ISGH  S  F L   S            
Sbjct: 63  MYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCS------------ 110

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
                                 F++M ++  + P  V+ ++VL  C     +  G Q+H 
Sbjct: 111 ----------------------FVDM-VRTGVVPTPVTYITVLSACGKDKYIWLGMQVHK 147

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------------------------- 316
             +   +  D+ + NALIDMY++C  +D A  +FE                         
Sbjct: 148 CVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQ 207

Query: 317 -----DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
                D    +D ++W++++ GY   G+  EA+ ++ +M     + D  T+V V++AC +
Sbjct: 208 ARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQ 267

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
            G +  G E     ++ + IK  T +   +VDM  + G + +AL   K M +    + W 
Sbjct: 268 LGALETG-EWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFT-WT 325

Query: 432 ALVSASVMHGNSEMQ-DLAYKSLIQLEPENPSNYVSL 467
           A++    ++G+ E   ++ Y+ L   E  +   ++ +
Sbjct: 326 AVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGV 362


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/508 (36%), Positives = 280/508 (55%), Gaps = 36/508 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L + +   +  +  G +++ FV + LI  YA CG    ++LVF++ +   V ++N+++ 
Sbjct: 135 ALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVA 194

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            Y+KN    E +E+F  M    V+ D+ TL ++    G I D  +G  + G   + G   
Sbjct: 195 AYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLAR 254

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +  L  +LM MY KCG+                                    ++RR+FD
Sbjct: 255 NPKLVTALMDMYAKCGEIG----------------------------------KARRLFD 280

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            M+ R+V AW+AMI+GY Q     EAL LF EMQL  R+EPN V++VSVL  C+ L  L 
Sbjct: 281 GMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLA-RVEPNDVTMVSVLSACAVLGALE 339

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK +H +  RK L+    L  AL+D Y+KCG +D A   FE     K++ TW++++ G 
Sbjct: 340 TGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPV-KNSWTWTALIKGM 398

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G+G EA+ L++ M   G +P  +T +GVL AC  S L+ EG   ++S+   Y IKP 
Sbjct: 399 ATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPR 458

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+VD+LGRAG +D A  FI+TMP+EP+  IW AL+S+  +H N  + + A K +I
Sbjct: 459 VEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQII 518

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
            L P +  +YV LSN+YAS+ +W   A +R  MKDRG++K+PGCS I + G    F   D
Sbjct: 519 SLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAED 578

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASPH 542
             HP    IY+ ++++I  ++ A   P+
Sbjct: 579 SDHPELREIYQKVEEMIGRIKVAGYVPN 606



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A   +L+  K  HS +          + T L+  YA CG    +   F S+
Sbjct: 324 TMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESM 383

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
             K+ + + +LI G   N    EALELFS+M  + + P D T 
Sbjct: 384 PVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTF 426


>gi|414884401|tpg|DAA60415.1| TPA: hypothetical protein ZEAMMB73_385428 [Zea mays]
          Length = 504

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/465 (38%), Positives = 279/465 (60%), Gaps = 47/465 (10%)

Query: 43  HSQILSLGHI-SNPFVSTKLITAYALCGQPTQ--SQLVFNSIQHKDVYLYNSLINGYVKN 99
           H+  L LG + ++P ++  L+  Y     P Q  ++ +F  +  +    YN+LI+     
Sbjct: 80  HALALRLGLLHADPVLANSLLRLYICPPVPCQGLARRLFEEMPARTASSYNTLIS----- 134

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD--VI 157
           H H++   L   M     +PD FT++ +  +    +    G  +H  +++     D    
Sbjct: 135 HSHDDVWGLVRRMVADGCAPDRFTMSAVLPVCTSAR---WGRELHCYAVRDWMCGDDDFH 191

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           +++ L+SMY + G                          H  S        +R VF++M 
Sbjct: 192 VSSGLVSMYCRVG--------------------------HPDS--------ARTVFNRMA 217

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
           RRNV  WTAM+ GY++NG  D+A+  F  M L D I PN+++L++VL    +L  L+ GK
Sbjct: 218 RRNVVCWTAMVGGYIENGMFDDAVDCFRAMWLIDAIPPNRITLITVLSAIEALSSLAEGK 277

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           Q+HGFA+R  ++ ++SL NALID Y+KCG+L  ARR+F+D+S+ KD I+W +++ GYG+H
Sbjct: 278 QVHGFAVRMMMHAEMSLNNALIDTYAKCGALHYARRIFDDTSWCKDVISWGAMILGYGIH 337

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G G EAV L+++M+  G KPD I  +GVLSAC  +GL+ +GL  Y+S++N + + PT E+
Sbjct: 338 GMGVEAVALFDQMLSSGVKPDSIIGLGVLSACCHAGLVLKGLNTYSSMVNDHGVHPTEEM 397

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
           CAC+VD+LGR+G +  ALDF+K+M VEP  S+WGAL+ ASV + N E+QDLA +SL++LE
Sbjct: 398 CACMVDLLGRSGNVYHALDFVKSMSVEPGSSVWGALLDASVKYDNKEIQDLASRSLLRLE 457

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
              PSN V++SNL ASS RW+ V ++R  +    LKK  GCSW++
Sbjct: 458 QGKPSNLVAVSNLNASSERWNIVKQVRDTINQGSLKKKTGCSWVN 502


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 177/505 (35%), Positives = 293/505 (58%), Gaps = 7/505 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI--QHKDVYLYNSLINGYV 97
           +Q H+QI+      +    T++    A       +Q +F  +  Q  + +++NS +    
Sbjct: 45  RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALA 104

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           +     +A+ LF  +   +V PD FT +++ +    + DL+ G ++HG+  K+GF  ++ 
Sbjct: 105 EGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLY 164

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           L N ++ +Y  CG+  E   LF++MPQR+V +WN+ I+     GD      +  +F +M 
Sbjct: 165 LQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHE---GAYDLFSRMP 221

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            RNV +WT+MI GYVQ G   EA+ LF +M+ +  ++ N+V++V+VL  C+ L  L  G 
Sbjct: 222 ERNVRSWTSMIAGYVQCGKAKEAIHLFAKME-EAGVKCNEVTVVAVLAACADLGALDLGM 280

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +IH ++ R     +V + N LIDMY KCG L+ A +VFE+    +  ++WS+++ G  +H
Sbjct: 281 RIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMH 339

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G+  EA+ L++ M  +G +P+ +T +G+L AC   GLI+EG   + S+   Y I P  E 
Sbjct: 340 GRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEH 399

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             C+VD+L RAG L  A +FI  MP++P+  +WGAL+ A  +H N EM + A K L++L+
Sbjct: 400 YGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELD 459

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P N   YV LSN+YA + RW+  A +R  MKDR +KK+PG S I++ G  H F   +++H
Sbjct: 460 PLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESH 519

Query: 518 PCSVSIYEMLDDLILIMRGAAASPH 542
           P +  I++  ++L+  MR     P+
Sbjct: 520 PDTEQIFQRWEELLEEMRLKGYVPN 544



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 45/105 (42%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
             TV   L   A   +L L  + H      G   N  +S  LI  Y  CG   ++  VF 
Sbjct: 260 EVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFE 319

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
            ++ + V  ++++I G   +    EAL LFS+M    + P+  T 
Sbjct: 320 EMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTF 364


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 199/612 (32%), Positives = 321/612 (52%), Gaps = 81/612 (13%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           +S+A  +F     + Y   T    LQ SA H++L   K+ HS +L  G +++P   T LI
Sbjct: 24  ISTAIQSF----QQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLI 79

Query: 63  TAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
             Y+ C Q   +  +F+   H+ +V+ +N++I+G++ N    E  E +  M    V PD 
Sbjct: 80  NMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDK 139

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
           FT     K   ++ ++     IHGL  K G  +DV + ++L++ Y+K G        F+E
Sbjct: 140 FTFPCAIKACLDVLEIKK---IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEE 196

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRS-RRVFDQMKRRNVYAWTAMINGYVQNGDL--- 237
           +P R+V  WN  ++G+A  G F +V+ + RR+ D+    + +  T +++ +   GDL   
Sbjct: 197 LPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNG 256

Query: 238 --------------------------------DEALVLFLEMQLKD-------------- 251
                                           ++AL +F  M+ KD              
Sbjct: 257 RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQC 316

Query: 252 ----------------RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH----- 290
                            I+P+ V++ +VLP CS L  L  G++IHG+ I   L       
Sbjct: 317 GDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDI 376

Query: 291 -DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            DV L NA+IDMY+KCGS+  A  VFE  S NKD  +W+ ++ GYG+HG G+EA+ ++++
Sbjct: 377 DDVLLKNAVIDMYAKCGSMRDAHLVFERMS-NKDVASWNIMIMGYGMHGYGNEALEMFSR 435

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M  +  KPD +T VGVLSAC  +G +++G      + + Y + PT E   CV+DMLGRAG
Sbjct: 436 MCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAG 495

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
           QLD A +   TMP+E +P +W AL++A  +H ++ + ++A + + +LEPE+  +YV +SN
Sbjct: 496 QLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSN 555

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
           +Y +  R++ V E+R  M+ + ++K+PGCSWI +    H F  AD+AHP + SIY  L+ 
Sbjct: 556 VYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAHSIYAGLNS 615

Query: 530 LILIMRGAAASP 541
           L   +R     P
Sbjct: 616 LTARLREHGYVP 627


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 175/475 (36%), Positives = 276/475 (58%), Gaps = 44/475 (9%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +I+ YA  G  +Q++ +FN    +DV+ + ++++GYV+N   +EA + F  M      P 
Sbjct: 238 MISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM------P- 290

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
                                           V + I  N++++ YV+  K      LF+
Sbjct: 291 --------------------------------VKNEISYNAMLAGYVQYKKMVIAGELFE 318

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            MP RN+ SWN  I+G+  +G    + ++R++FD M +R+  +W A+I+GY QNG  +EA
Sbjct: 319 AMPCRNISSWNTMITGYGQNGG---IAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEA 375

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L +F+EM+ +D    N+ +    L TC+ +  L  GKQ+HG  ++        + NAL+ 
Sbjct: 376 LNMFVEMK-RDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLG 434

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY KCGS D A  VFE     KD ++W+++++GY  HG G +A++L+  M   G KPD I
Sbjct: 435 MYFKCGSTDEANDVFEGIE-EKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEI 493

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+VGVLSAC  SGLI+ G E + S+   Y +KPT++   C++D+LGRAG+L+ A + ++ 
Sbjct: 494 TMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRN 553

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP +P  + WGAL+ AS +HGN+E+ + A + + ++EP+N   YV LSNLYA+S RW  V
Sbjct: 554 MPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDV 613

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            ++R+ M++ G++K  G SW+ +  K H FSV D  HP    IY  L++L L MR
Sbjct: 614 GKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMR 668



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 193/399 (48%), Gaps = 35/399 (8%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSP 119
           ++T Y    +  ++  +F+ +  KDV  +N++++GY +N   +EA E+F+ M + N +S 
Sbjct: 114 MLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISW 173

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +    A +   +G +K+     L    S       ++I  N LM  YVK     +   LF
Sbjct: 174 NGLLAAYVH--NGRLKEAR--RLFESQS-----NWELISWNCLMGGYVKRNMLGDARQLF 224

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D MP R+V SWN  ISG+A  GD S   +++R+F++   R+V+ WTAM++GYVQNG +DE
Sbjct: 225 DRMPVRDVISWNTMISGYAQVGDLS---QAKRLFNESPIRDVFTWTAMVSGYVQNGMVDE 281

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH-----DVSL 294
           A   F EM +K+ I  N +              L+G  Q     I  EL       ++S 
Sbjct: 282 ARKYFDEMPVKNEISYNAM--------------LAGYVQYKKMVIAGELFEAMPCRNISS 327

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            N +I  Y + G +  AR++F D    +D ++W++I+SGY  +G   EA+ ++ +M   G
Sbjct: 328 WNTMITGYGQNGGIAQARKLF-DMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDG 386

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
              +  T    LS C     +  G +++  V+     +    +   ++ M  + G  D A
Sbjct: 387 ESSNRSTFSCALSTCADIAALELGKQVHGQVVKA-GFETGCFVGNALLGMYFKCGSTDEA 445

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
            D  + +  E     W  +++    HG      + ++S+
Sbjct: 446 NDVFEGIE-EKDVVSWNTMIAGYARHGFGRQALVLFESM 483



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 183/420 (43%), Gaps = 78/420 (18%)

Query: 33  HRSLKLTKQSHSQILSLGHISNPFVST--KLITAYALCGQPTQSQLVFNSIQHKDVYLYN 90
           +RS + +  S+S   S     +P + T  K I+++   G    +  VFNS+  +    YN
Sbjct: 24  YRSKRRSTNSYSP--SSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYN 81

Query: 91  SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           ++I+GY++N   + A +LF  M      P+                              
Sbjct: 82  AMISGYLRNAKFSLARDLFDKM------PER----------------------------- 106

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
               D+   N +++ YV+  +  E   LFD MP+++V SWN  +SG+A +G    V  +R
Sbjct: 107 ----DLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNG---FVDEAR 159

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
            VF++M  RN  +W  ++  YV NG L EA  LF      + I  N             L
Sbjct: 160 EVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWN------------CL 207

Query: 271 IGLSGGKQIHGFAIRKELN----HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           +G    + + G A R+  +     DV   N +I  Y++ G L  A+R+F +S   +D  T
Sbjct: 208 MGGYVKRNMLGDA-RQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPI-RDVFT 265

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+++VSGY  +G   EA   +++M       + I+   +L+   +   +    E++ ++ 
Sbjct: 266 WTAMVSGYVQNGMVDEARKYFDEMPV----KNEISYNAMLAGYVQYKKMVIAGELFEAM- 320

Query: 387 NTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
                 P   I +   ++   G+ G + +A      MP     S W A++S    +G+ E
Sbjct: 321 ------PCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVS-WAAIISGYAQNGHYE 373



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A   +L+L KQ H Q++  G  +  FV   L+  Y  CG   ++  VF  I+ KDV
Sbjct: 398 LSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDV 457

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL-ATISKLSGEIKDLNVGMLIHG 145
             +N++I GY ++    +AL LF +M  + V PD+ T+   +S  S      + G++  G
Sbjct: 458 VSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACS------HSGLIDRG 511

Query: 146 LSIKIGFVVDVILANS------LMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHA 198
                    D  +  +      ++ +  + G+  E  NL   MP      SW   +    
Sbjct: 512 TEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASR 571

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
             G+  L  ++  +  +M+ +N   +  + N Y  +G
Sbjct: 572 IHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASG 608


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/501 (36%), Positives = 277/501 (55%), Gaps = 36/501 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
             TV + L        L+  K+ H   +  G   +  V+   + AYA CG    ++ VF 
Sbjct: 236 EVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFY 295

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           S++ K V  +N+LI G  +N    +AL L+  M YS + PD FT+ ++   S  +K L  
Sbjct: 296 SMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRY 355

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG  ++ G  +D  +  SL+S+Y+ CG+ S                          
Sbjct: 356 GKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSS------------------------- 390

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    +R +FD M+ ++  +W AMI+GY QNG  ++AL+LF ++ + D  +P+ ++
Sbjct: 391 ---------ARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKL-VSDGFQPSDIA 440

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +VSVL  CS    L  GK+ H +A++  L  DV +  + IDMY+K G +  +R VF D  
Sbjct: 441 VVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVF-DGL 499

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            NKD  +W++I++ YG+HG G E++ L+ +M  +G  PD  T +G+L+ C  +GL+ EGL
Sbjct: 500 KNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGL 559

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           + +N + N + I+P  E  ACV+DMLGRAG+LD AL  +  MP +P   +W +L+S    
Sbjct: 560 KYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRN 619

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
            G  E+  +  + L++LEP+N  NYVSLSNLYA S RWD V  +R M+KD GL+K  GCS
Sbjct: 620 FGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCS 679

Query: 500 WISIHGKTHCFSVADKAHPCS 520
           WI + GK H F   D   P S
Sbjct: 680 WIELGGKVHSFVAGDNLLPQS 700



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 224/480 (46%), Gaps = 43/480 (8%)

Query: 2   ILSSARNTFA-LVTSRNYTSATVQHFLQVSATHRSLK--LTKQSHSQILSLGHISNPFVS 58
           + S A + F  L+T   + +        + A   SL   L +  H  ++ +G + + FV 
Sbjct: 10  LYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVG 69

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY--YSN 116
             LI  Y   G    +  VF+ +  +++  +NS+I+G+ +N    +  ++   M      
Sbjct: 70  NALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEG 129

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           + PD  TL T+  +     D+ +G+ IHGL++K+G   DV + NSL+ MY KCG  +E  
Sbjct: 130 LLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTE-- 187

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
                                           ++ +FD+  R+N  +W  MI G    G 
Sbjct: 188 --------------------------------AQMLFDKNNRKNAVSWNTMIGGLCTKGY 215

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
           + EA  LF EMQ+++ IE N+V+++++LP C  +  L   K++HG++IR    +D  + N
Sbjct: 216 IFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVAN 275

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
             +  Y+KCG L CA RVF  S   K   +W++++ G   +G   +A+ LY +M   G  
Sbjct: 276 GFVAAYAKCGMLICAERVFY-SMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLV 334

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD  TI  +L A      +  G E++  V+  + ++  + I   ++ +    G+   A  
Sbjct: 335 PDWFTIGSLLLASAHLKSLRYGKEVHGFVLR-HGLEIDSFIGISLLSLYIHCGESSSARL 393

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
               M  E S   W A++S    +G  E   + ++ L+  +   PS+   +S L A S++
Sbjct: 394 LFDGME-EKSSVSWNAMISGYSQNGLPEDALILFRKLVS-DGFQPSDIAVVSVLGACSQQ 451


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/503 (35%), Positives = 290/503 (57%), Gaps = 5/503 (0%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H L +     +LK   Q+H  +LS G   +  + ++ I A +  G    S  +F      
Sbjct: 43  HLLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRP 102

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D+YLYN++I          EA+ L++ +  S++  D ++L  + K    +  ++VG  IH
Sbjct: 103 DIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIH 162

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
             +I  G V D+ +  +L+ MY  CG  SE   LFD +  R+V  WN  ++G+A  GD  
Sbjct: 163 CQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGD-- 220

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
            V  +R +F++M  RNV +WTA+I GY Q    +EA+ +F  MQL++ +EP+++++++ L
Sbjct: 221 -VDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEE-VEPDEIAMLAAL 278

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             C+ L  L  G+ IH +  +  L+  V L NALIDMY+KCG ++ A  VF++   +K  
Sbjct: 279 SACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNME-HKSV 337

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           ITW+S++ G  LHG G EA+ +++ M     KP+ IT V +LSAC   GL+  G   +  
Sbjct: 338 ITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKC 397

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +   Y IKP  +   C++D+LGRAG L  A + ++ MP E +  IWG+L++A+ +HG++E
Sbjct: 398 MGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAE 457

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           +   A + LI++EP N  NY  LSN+YA+  +W+    +R +M+D G+KK PG S I ++
Sbjct: 458 LGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVN 517

Query: 505 GKTHCFSVADKAHPCSVSIYEML 527
            + H F   DK HP S  I+E+L
Sbjct: 518 NRVHEFVAGDKLHPQSERIFEVL 540


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/508 (35%), Positives = 292/508 (57%), Gaps = 5/508 (0%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H L +     +LK   Q+H  +LS G   +  + ++ I A +  G    S  +F      
Sbjct: 43  HLLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRP 102

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D+YLYN++I          EA+ L++ +  S++  D ++L  + K    +  ++VG  IH
Sbjct: 103 DIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIH 162

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
             +I  G V D+ +  +L+ MY  CG  SE   LFD +  R+V  WN  ++G+A  GD  
Sbjct: 163 CQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGD-- 220

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
            V  +R +F++M  RNV +WTA+I GY Q    +EA+ +F  MQL++ +EP+++++++ L
Sbjct: 221 -VDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEE-VEPDEIAMLAAL 278

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             C+ L  L  G+ IH +  +  L+  V L NALIDMY+KCG ++ A  VF++   +K  
Sbjct: 279 SACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNME-HKSV 337

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           ITW+S++ G  LHG G EA+ +++ M     KP+ IT V +LSAC   GL+  G   +  
Sbjct: 338 ITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKC 397

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +   Y IKP  +   C++D+LGRAG L  A + ++ MP E +  IWG+L++A+ +HG++E
Sbjct: 398 MGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAE 457

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           +   A + LI++EP N  NY  LSN+YA+  +W+    +R +M+D G+KK PG S I ++
Sbjct: 458 LGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVN 517

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLIL 532
            + H F   DK HP S  I+E+L  J L
Sbjct: 518 NRVHEFVAGDKLHPQSERIFEVLCKJNL 545


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/505 (35%), Positives = 293/505 (58%), Gaps = 7/505 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI--QHKDVYLYNSLINGYV 97
           +Q H+QI+      +    T++    A       +Q +F  +  Q  + +++NS +    
Sbjct: 45  RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALA 104

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           +     +A+ LF  +   +V PD FT +++ +    + DL+ G ++HG+  K+GF  ++ 
Sbjct: 105 EGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLY 164

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           L N ++ +Y  CG+  E   LF++MPQR+V +WN+ I+     GD      +  +F +M 
Sbjct: 165 LQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHE---GAYDLFSRMP 221

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            RNV +WT+MI GYVQ G   EA+ LF +M+ +  ++ N+V++V+VL  C+ L  L  G 
Sbjct: 222 ERNVRSWTSMIAGYVQCGKAKEAIHLFAKME-EAGVKCNEVTVVAVLAACADLGALDLGM 280

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +IH ++ R     +V + N LIDMY KCG L+ A +VFE+    +  ++WS+++ G  +H
Sbjct: 281 RIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMH 339

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G+  EA+ L++ M  +G +P+ +T +G+L AC   GLI+EG   + S+   Y I P  E 
Sbjct: 340 GRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEH 399

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             C+VD+L RAG L  A +FI  MP++P+  +WGAL+ A  +H N EM + A K L++L+
Sbjct: 400 YGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELD 459

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P N   YV LSN+YA + RW+  A +R  MKDR +KK+PG S I++ G  H F   +++H
Sbjct: 460 PLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESH 519

Query: 518 PCSVSIYEMLDDLILIMRGAAASPH 542
           P +  I++  ++L+  MR     P+
Sbjct: 520 PDTEQIFQRWEELLEEMRLKGYVPN 544



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 45/105 (42%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
             TV   L   A   +L L  + H      G   N  +S  LI  Y  CG   ++  VF 
Sbjct: 260 EVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFE 319

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
            ++ + V  ++++I G   +    EAL LFS+M    + P+  T 
Sbjct: 320 EMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTF 364


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 199/612 (32%), Positives = 321/612 (52%), Gaps = 81/612 (13%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           +S+A  +F     + Y   T    LQ SA H++L   K+ HS +L  G +++P   T LI
Sbjct: 24  ISTAIQSF----QQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLI 79

Query: 63  TAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
             Y+ C Q   +  +F+   H+ +V+ +N++I+G++ N    E  E +  M    V PD 
Sbjct: 80  NMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDK 139

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
           FT     K   ++ ++     IHGL  K G  +DV + ++L++ Y+K G        F+E
Sbjct: 140 FTFPCAIKACLDVLEIKK---IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEE 196

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRS-RRVFDQMKRRNVYAWTAMINGYVQNGDL--- 237
           +P R+V  WN  ++G+A  G F +V+ + RR+ D+    + +  T +++ +   GDL   
Sbjct: 197 LPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNG 256

Query: 238 --------------------------------DEALVLFLEMQLKD-------------- 251
                                           ++AL +F  M+ KD              
Sbjct: 257 RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQC 316

Query: 252 ----------------RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH----- 290
                            I+P+ V++ +VLP CS L  L  G++IHG+ I   L       
Sbjct: 317 GDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDI 376

Query: 291 -DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            DV L NA+IDMY+KCGS+  A  VFE  S NKD  +W+ ++ GYG+HG G+EA+ ++++
Sbjct: 377 DDVLLKNAVIDMYAKCGSMRDAHLVFERMS-NKDVASWNIMIMGYGMHGYGNEALEMFSR 435

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M  +  KPD +T VGVLSAC  +G +++G      + + Y + PT E   CV+DMLGRAG
Sbjct: 436 MCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAG 495

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
           QLD A +   TMP+E +P +W AL++A  +H ++ + ++A + + +LEPE+  +YV +SN
Sbjct: 496 QLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSN 555

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
           +Y +  R++ V E+R  M+ + ++K+PGCSWI +    H F  AD+AHP + SIY  L+ 
Sbjct: 556 VYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAHSIYAGLNS 615

Query: 530 LILIMRGAAASP 541
           L   +R     P
Sbjct: 616 LTARLREHGYVP 627


>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 511

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 171/492 (34%), Positives = 282/492 (57%), Gaps = 8/492 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H+  L  G       +  L+    L      ++ +F+  ++  ++LYN LI  Y  +
Sbjct: 5   KQLHAHCLRTGVDE----TKDLLQRLLLIPNLVYARKLFDLHRNPCIFLYNKLIQSYSVH 60

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
           H  +E++ L++ + +  + P+  T   I   S          L+H    + GF  D    
Sbjct: 61  HQPHESIVLYNLLSFDGIRPNHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCC 120

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
            +L++ Y K G       +FDEM  R+V  WN  I+G+   GD    +    +FD M  +
Sbjct: 121 TALITAYAKLGALCCARRVFDEMSNRDVPVWNAMITGYQRRGDMKAAME---LFDSMPNK 177

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV +WT +I+G+ QNG+  EAL +FL M+    ++PN ++LVSVLP C++L  L  G+++
Sbjct: 178 NVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHITLVSVLPACANLGELEIGRRL 237

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
            G+A       ++ + NA ++MYSKCG +D A+R+F++    ++ I+W+S++     HGK
Sbjct: 238 EGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEIGNQRNLISWNSMIGSLATHGK 297

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+ LY +M+  G +PD +T VG+L AC   G++ +G E+  S+   ++I P  E   
Sbjct: 298 HDEALELYAQMLQEGERPDAVTFVGLLLACVHGGMVLKGKELLKSMEEVHKISPKLEHYG 357

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C++D+LGR G+L  A D IKTMP++P   +WG L+ A   HGN E+ ++A ++L++LEP 
Sbjct: 358 CMIDLLGRVGKLQEACDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALMKLEPT 417

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG-KTHCFSVADKAHP 518
           NP N V +SN+YA++ +WD V  +R +MK   + K+ G S+    G + H F+V DK+HP
Sbjct: 418 NPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEAGVEVHKFTVEDKSHP 477

Query: 519 CSVSIYEMLDDL 530
            S  IY++LD++
Sbjct: 478 RSYEIYQVLDEI 489



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 142/344 (41%), Gaps = 82/344 (23%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R L+L    HSQ    G  S+ F  T LITAYA  G    ++ VF+ + ++DV ++N++I
Sbjct: 99  RPLRLL---HSQFFRSGFESDSFCCTALITAYAKLGALCCARRVFDEMSNRDVPVWNAMI 155

Query: 94  NGYVKNHGHNEALELFSNMYYSNVS--------------------------------PDD 121
            GY +      A+ELF +M   NV+                                P+ 
Sbjct: 156 TGYQRRGDMKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNH 215

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            TL ++      + +L +G  + G + + GF  ++ + N+ + MY KCG       LFDE
Sbjct: 216 ITLVSVLPACANLGELEIGRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDE 275

Query: 182 MP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           +  QRN+ SWN                                  +MI     +G  DEA
Sbjct: 276 IGNQRNLISWN----------------------------------SMIGSLATHGKHDEA 301

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN--HDVSL---- 294
           L L+ +M L++   P+ V+ V +L  C     + GG  + G  + K +   H +S     
Sbjct: 302 LELYAQM-LQEGERPDAVTFVGLLLAC-----VHGGMVLKGKELLKSMEEVHKISPKLEH 355

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
              +ID+  + G L  A  + +      DA+ W +++     HG
Sbjct: 356 YGCMIDLLGRVGKLQEACDLIKTMPMKPDAVVWGTLLGACSFHG 399


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/537 (35%), Positives = 292/537 (54%), Gaps = 38/537 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN-- 79
           T+ + L   A  R L+  K+ HS I+ LG   N  VS  L+  YA CG P  +++VF+  
Sbjct: 148 TLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRM 207

Query: 80  -----------------------------SIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
                                         +  +D+  +NS+I+GY +      AL++FS
Sbjct: 208 VVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFS 267

Query: 111 NMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
            M   S +SPD FTLA++      ++ L +G  IH   +  GF +  I+ N+L+SMY +C
Sbjct: 268 KMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRC 327

Query: 170 GKFSECLNLFDEMPQRN--VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           G       L ++   ++  +  +   + G+   GD +    ++ +FD +K R+V AWTAM
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN---EAKNIFDSLKDRDVVAWTAM 384

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I GY Q+G   EA+ LF  M + +   PN  +L ++L   SSL  L  GKQIHG A++  
Sbjct: 385 IVGYEQHGLYGEAINLFRSM-VGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSG 443

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
             + VS+ NALI MY+K GS+  A R F+     +D ++W+S++     HG   EA+ L+
Sbjct: 444 EIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELF 503

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
             M+  G +PD IT VGV SAC  +GL+N+G + ++ + +  +I PT    AC+VD+ GR
Sbjct: 504 ETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGR 563

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           AG L  A +FI+ MP+EP    WG+L+SA  ++ N ++  +A + L+ LEPEN   Y +L
Sbjct: 564 AGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSAL 623

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           +NLY++  +W+  A++R  MKD  +KK  G SWI +  K H F V D  HP    IY
Sbjct: 624 ANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIY 680



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 198/428 (46%), Gaps = 42/428 (9%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           +   F    +++AYA  G    S   F+ +  +D   + ++I GY     +++A+ +   
Sbjct: 77  LRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGE 136

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    + P  FTL  +       + L  G  +H   +K+G   +V ++NSL++MY KCG 
Sbjct: 137 MMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                 +FD M  +++ SWN  I+ H   G   L +     F+QM  R++  W +MI+GY
Sbjct: 197 PMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQ---FEQMAERDIVTWNSMISGY 253

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            Q G    AL +F +M     + P++ +L SVL  C++L  L  G+QIH   +    +  
Sbjct: 254 NQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDIS 313

Query: 292 VSLCNALIDMYSKCGSLDCARRVFE--------------------------------DSS 319
             + NALI MYS+CG ++ ARR+ E                                DS 
Sbjct: 314 GIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSL 373

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            ++D + W++++ GY  HG   EA+ L+  MV    +P+  T+  +LS       +  G 
Sbjct: 374 KDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGK 433

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQL---DRALDFIKTMPVEPSPSIWGALVSA 436
           +I+ S + +  I   + +   ++ M  +AG +    RA D I+    E     W +++ A
Sbjct: 434 QIHGSAVKSGEIYSVS-VSNALITMYAKAGSITSASRAFDLIR---CERDTVSWTSMIIA 489

Query: 437 SVMHGNSE 444
              HG++E
Sbjct: 490 LAQHGHAE 497



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 157/309 (50%), Gaps = 36/309 (11%)

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           L+H   IK G V  V L N+LM++Y K G       LFDEMP R   SWN  +S +A  G
Sbjct: 35  LVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRG 94

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D      S   FD++ +R+  +WT MI GY   G   +A+ +  EM +++ IEP++ +L 
Sbjct: 95  DMD---SSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEM-MREGIEPSQFTLT 150

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---- 317
           +VL + ++   L  GK++H F ++  L  +VS+ N+L++MY+KCG    A+ VF+     
Sbjct: 151 NVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVK 210

Query: 318 --SSFN------------------------KDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
             SS+N                        +D +TW+S++SGY   G    A+ +++KM+
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKML 270

Query: 352 CLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
                 PD  T+  VLSAC     +  G +I++ ++ T     +  +   ++ M  R G 
Sbjct: 271 RDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTT-GFDISGIVLNALISMYSRCGG 329

Query: 411 LDRALDFIK 419
           ++ A   I+
Sbjct: 330 VETARRLIE 338



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 5/225 (2%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L V+++  SL   KQ H   +  G I +  VS  LIT YA  G  T +   F+
Sbjct: 413 SYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFD 472

Query: 80  SIQ-HKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
            I+  +D   + S+I   +  HGH  EALELF  M    + PD  T   +         +
Sbjct: 473 LIRCERDTVSWTSMIIA-LAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLV 531

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLM-SMYVKCGKFSECLNLFDEMP-QRNVGSWNVRIS 195
           N G     +   +  ++  +   + M  ++ + G   E     ++MP + +V +W   +S
Sbjct: 532 NQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLS 591

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                 +  L   +      ++  N  A++A+ N Y   G  +EA
Sbjct: 592 ACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEA 636


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/542 (33%), Positives = 299/542 (55%), Gaps = 44/542 (8%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYLY 89
           SL+   Q H+ +L  GH  + +VS  L+  YA    P  S       VF+SI + +V+++
Sbjct: 45  SLQYLTQLHALVLRSGHFQDHYVSGALLKCYA---NPHFSNFDFALKVFSSIPNPNVFIW 101

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N +I G ++N+   +A+  +  M   +  P+ FT  T+ K     + +  G  IHG  +K
Sbjct: 102 NIVIKGCLENNKLFKAIYFYGRMVI-DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVK 160

Query: 150 IGF------------------------------VVDVILANSLMSMYVKCGKFSECLNLF 179
            G                                 DV+  N+++  Y+KCG       LF
Sbjct: 161 HGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLF 220

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
            +MP +N+GSWNV I+G A  G+      +R++FD+M  R+  +W++M++GY+  G   E
Sbjct: 221 AQMPVKNIGSWNVMINGLAKGGNLG---DARKLFDEMSERDEISWSSMVDGYISAGRYKE 277

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           AL +F +MQ ++   P +  L SVL  CS++  +  G+ +H +  R  +  D  L  AL+
Sbjct: 278 ALEIFQQMQ-REETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL 336

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           DMY+KCG LD    VFE+    ++  TW++++ G  +HG+  +A+ L++K+     KP+ 
Sbjct: 337 DMYAKCGRLDMGWEVFEEMK-EREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNG 395

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           IT+VGVL+AC  +G +++GL I+ ++   Y + P  E   C+VD+LGR+G    A D I 
Sbjct: 396 ITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLIN 455

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
           +MP++P+ ++WGAL+ A  +HGN ++ +   K L++LEP+N   YV LSN+YA   R+D 
Sbjct: 456 SMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDD 515

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
           V+++R +MK+RG+K  PG S + ++G  H F + D +HP    IY  L  +   ++ A  
Sbjct: 516 VSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGH 575

Query: 540 SP 541
           SP
Sbjct: 576 SP 577


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 171/506 (33%), Positives = 290/506 (57%), Gaps = 11/506 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCG---QPTQSQLVFNSIQHKDVYLYNSLINGY 96
           KQ H+ +L     ++P  S  L    ++C      + ++L+F  +   +V  +N+ +  +
Sbjct: 32  KQLHAHLLK---TNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSF 88

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            +     +A+ LF  +   ++SPD +T + + K    + D+  G ++HG   K+G   ++
Sbjct: 89  AEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            L N ++ +Y  CG+      +FD+MPQR+V +WN+ I+     GD      + ++F +M
Sbjct: 149 FLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAE---GAYKLFAEM 205

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
             RNV +WT+MI GY Q G   EA+ LFLEM+    + PN+V++V+VL  C+ +  L  G
Sbjct: 206 PERNVRSWTSMIGGYAQCGKSKEAIDLFLEME-DAGLLPNEVTVVAVLVACADMGNLVLG 264

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           ++IH F+ R     ++ +CN LIDMY KCG L+ A R+F D+   +  ++WS++++G   
Sbjct: 265 RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIF-DNMEERTVVSWSAMIAGLAA 323

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG+  +A+ L+NKM+  G KP+ +T +G+L AC   G++ +G + + S+   Y I P  E
Sbjct: 324 HGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIE 383

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
              C+VD+  RAG L  A +FI  MP+ P+  +WGAL+    +H N ++ + A + L +L
Sbjct: 384 HYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKL 443

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           +P N   YV LSN+YA + RW+ VA +R +M+DRG+KK+PG S I + G  + F   D  
Sbjct: 444 DPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDT 503

Query: 517 HPCSVSIYEMLDDLILIMRGAAASPH 542
           HP +  I++  + L+  M+     P+
Sbjct: 504 HPQTEEIFQTWEKLLQRMKLKGYVPN 529



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 4/233 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A   +L L ++ H      G+  N  V   LI  Y  CG    +  +F+++
Sbjct: 247 TVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNM 306

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + + V  ++++I G   +    +AL LF+ M  + V P+  T   I      +  +  G 
Sbjct: 307 EERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGR 366

Query: 142 -LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG-SWNVRISGHAS 199
                ++   G V  +     ++ ++ + G   E       MP    G  W   + G   
Sbjct: 367 KYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKV 426

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
             +  L   + R   ++   N   +  + N Y + G  ++  V  +   ++DR
Sbjct: 427 HKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWED--VARVRKLMRDR 477


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/503 (36%), Positives = 296/503 (58%), Gaps = 9/503 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN----SIQHKDVYLYNSLINGYVK 98
           H+ ++  G  SN   ++ LI  YA  G    ++ V      +       ++N+LI+G+ +
Sbjct: 79  HAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNR 138

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
           +     +   F +M  ++      T  ++    G+ KDL +GM +H   ++ G + D  +
Sbjct: 139 SGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRV 198

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            N+L+ MY +CG       LF+ M  R++ SW   ISG   SG    V R+R +FD M  
Sbjct: 199 ENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQ---VDRARDLFDHMPE 255

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           R+  AWTAMI+GYVQ G   +AL  F  MQ+  ++  ++ ++VSV+  C+ L  L  G+ 
Sbjct: 256 RDTIAWTAMIDGYVQVGRFRDALETFRYMQIC-KVRADEFTMVSVVTACAQLGALETGEW 314

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
              +  R  +  DV + NALIDMYSKCGS++ A  VF+D   N+D  TW++I+ G  ++G
Sbjct: 315 ARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMH-NRDKFTWTAIILGLAVNG 373

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           +G EA+ ++ +M+     PD +T VGVL+AC  +GL+++G E + S+   Y I PT    
Sbjct: 374 RGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHY 433

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C++D+LGRAG+L  ALD I  MP++P+ +IWG L+++  ++GNSE+ +LA + L++L+P
Sbjct: 434 GCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDP 493

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
           +N + Y+ LSN+YA S RW  V  +R ++ ++G+KK PGCS I ++G  H F  AD++HP
Sbjct: 494 DNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHP 553

Query: 519 CSVSIYEMLDDLILIMRGAAASP 541
            +  IY  L++++  +R A   P
Sbjct: 554 MNKEIYSKLENVLTDLRNAGYVP 576



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 152/382 (39%), Gaps = 71/382 (18%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC---------- 68
           T+ T    L      + L L  Q H ++L  G + +  V   L+  YA C          
Sbjct: 160 TAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLF 219

Query: 69  ---------------------GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
                                GQ  +++ +F+ +  +D   + ++I+GYV+     +ALE
Sbjct: 220 EGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALE 279

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
            F  M    V  D+FT+ ++     ++  L  G        ++G  +DV + N+L+ MY 
Sbjct: 280 TFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYS 339

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           KCG     L++F +M  R                                  + + WTA+
Sbjct: 340 KCGSIERALDVFKDMHNR----------------------------------DKFTWTAI 365

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I G   NG  +EA+ +F  M L+    P++V+ V VL  C+    +  G++    ++ + 
Sbjct: 366 ILGLAVNGRGEEAIDMFYRM-LRALQTPDEVTFVGVLTACTHAGLVDKGREFF-LSMTEA 423

Query: 288 LNHDVSLCN--ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
            N   ++ +   LID+  + G L  A    +      ++  W ++++   ++G      L
Sbjct: 424 YNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGEL 483

Query: 346 LYNKMVCLGSKPDIITIVGVLS 367
              +++ L   PD  T   +LS
Sbjct: 484 AAERLLEL--DPDNSTAYILLS 503



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 103/440 (23%), Positives = 169/440 (38%), Gaps = 89/440 (20%)

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK-- 129
           ++++ + + I H+     +S ++G    HG  EA+  +  M      PD +T  ++ K  
Sbjct: 6   SRARSLLDGIPHRRGRAASSSVSG----HGAEEAVAGYVRMLAGGARPDAYTFPSLLKAA 61

Query: 130 ---LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY--------VKCGKFSECLNL 178
                  +   +VG  IH   +K G   +   A+SL+ MY         +    + CL  
Sbjct: 62  AAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLAT 121

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
               P      WN  ISGH  SG F L   S   F  M R +  A               
Sbjct: 122 GGGAPV----MWNALISGHNRSGRFELSCCS---FVDMVRASAMA--------------- 159

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
                              V+ VSVL  C     L  G Q+H   +   +  D  + NAL
Sbjct: 160 -----------------TAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENAL 202

Query: 299 IDMYSKCGSLDCARRVFE------------------------------DSSFNKDAITWS 328
           +DMY++CG +D A  +FE                              D    +D I W+
Sbjct: 203 VDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWT 262

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++ GY   G+  +A+  +  M     + D  T+V V++AC + G +  G E     +  
Sbjct: 263 AMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETG-EWARIYMGR 321

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ-D 447
             IK    +   ++DM  + G ++RALD  K M        W A++    ++G  E   D
Sbjct: 322 LGIKMDVFVGNALIDMYSKCGSIERALDVFKDMH-NRDKFTWTAIILGLAVNGRGEEAID 380

Query: 448 LAYKSLIQLEPENPSNYVSL 467
           + Y+ L  L+  +   +V +
Sbjct: 381 MFYRMLRALQTPDEVTFVGV 400


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 185/521 (35%), Positives = 310/521 (59%), Gaps = 20/521 (3%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC------GQPTQ----SQ 75
            LQ  ++   LK+    H  +L    IS+ FV+++L+ A ALC       +PT     + 
Sbjct: 18  LLQSCSSFSDLKII---HGFLLRTHLISDVFVASRLL-ALALCVDDSTFHKPTNLLGYAY 73

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
            +F+ IQ+ +++++N LI  +      ++A   ++ M  S + PD+ T   + K S E++
Sbjct: 74  GIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEME 133

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
            + VG   H   ++ GF  DV + NSL+ MY  CG  +    +F +MP R+V SW   ++
Sbjct: 134 CVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVA 193

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
           G+   G   +V  +R +FD+M  RN++ W+ MINGY +N   ++A+ LF E+  ++ +  
Sbjct: 194 GYCKCG---MVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF-ELMKREGVVA 249

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N+  +VSV+ +C+ L  L  G++ H + ++  +  ++ L  AL+DMY +CG ++ A RVF
Sbjct: 250 NETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVF 309

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
           E+   +KD+++WSSI+ G  +HG  H+A+  +++MV LG  P  IT+  VLSAC   GL+
Sbjct: 310 EELP-DKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLV 368

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           ++GLEIY ++   Y I+P  E   C+VDMLGRAG+L  A +FI  MPV+P+  I GAL+ 
Sbjct: 369 DKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLG 428

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
           A  ++ N+E+ +     LI+++PE+   YV LSN+YA + +W+ +  LR +MK++ +KK 
Sbjct: 429 ACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKP 488

Query: 496 PGCSWISIHGKTHCFSVA-DKAHPCSVSIYEMLDDLILIMR 535
           PG S I I GK + FS+  D+ HP    I  + ++++  +R
Sbjct: 489 PGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIR 529



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 122/270 (45%), Gaps = 40/270 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVS----------------------- 58
           T    ++ S     + + +Q+HSQI+  G  ++ +V                        
Sbjct: 121 TFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQM 180

Query: 59  --------TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
                   T ++  Y  CG    ++ +F+ + H++++ ++ +INGY KN+   +A++LF 
Sbjct: 181 PFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFE 240

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M    V  ++  + ++      +  L  G   H   +K    V++IL  +L+ MY +CG
Sbjct: 241 LMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCG 300

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-----RNVYAWT 225
           +  + + +F+E+P ++  SW+  I G A  G      ++   F QM R     R++   T
Sbjct: 301 EIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAH---KAIHYFSQMVRLGFSPRDI-TLT 356

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
           A+++     G +D+ L ++  M+    IEP
Sbjct: 357 AVLSACSHGGLVDKGLEIYENMKRDYGIEP 386


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 177/500 (35%), Positives = 289/500 (57%), Gaps = 16/500 (3%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A+ R L L   +H+  LSL   S  +++T+++      G+   +  VF+ ++  ++
Sbjct: 20  LRACASFRDL-LRVHAHAVRLSLSQSS--YLATQIVHLCNAHGRVAHATRVFSQVREPNL 76

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSP-------DDFTLATISKLSGEIKDLNV 139
           +L+N++I  Y +NH H +A+ ++  M      P       D FT   + K  G +  L++
Sbjct: 77  HLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDL 136

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG  ++ G   + I+ NSL+ MY + G       +FD M +R+V SWN  IS HA 
Sbjct: 137 GKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHAR 196

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
            G      ++R VF+ M  + V +WTA+++GY   GD   A+  F  MQ++   EP+ VS
Sbjct: 197 LGQMR---KARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEG-FEPDDVS 252

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +V+VLP C+ L  L  G+ I+ +  R ++  +  +CNAL++MY+KCG +D A ++F   +
Sbjct: 253 IVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMA 312

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEG 378
             KD I+WS++V G   HG+  EAV L+ +M   G+ KP+ IT VG+LSAC  +GL++EG
Sbjct: 313 -EKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEG 371

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           L+ ++ + + Y I+P  E   C+VD+L R+GQ+ R LD I  MP+     IWG++++A  
Sbjct: 372 LDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACR 431

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
            HG+ +   LA + L+ LEPE+  N V L+N+YA++RRW  VA  R  ++ R ++K+PGC
Sbjct: 432 SHGDVDTAVLAAERLVALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRSRSMRKTPGC 491

Query: 499 SWISIHGKTHCFSVADKAHP 518
           S I +      F   +   P
Sbjct: 492 SLIEVDNVVQEFVAGEDLKP 511



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 153/403 (37%), Gaps = 76/403 (18%)

Query: 7   RNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYA 66
           R  F  ++       T    L+      +L L KQ H  ++  G  SN  V   LI  Y 
Sbjct: 105 RRPFPWISCTGGDRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYT 164

Query: 67  LCGQPTQSQLVFNSIQHKDVYLYNS-------------------------------LING 95
             G    ++ VF+ +Q +DV  +N+                               L++G
Sbjct: 165 RAGDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSG 224

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y      + A+E F  M      PDD ++  +     ++  L +G  I+    +   + +
Sbjct: 225 YTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRE 284

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             + N+L+ MY KCG   + L LF+ M +++V SW+  + G A+                
Sbjct: 285 TYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAA---------------- 328

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                             +G   EA+ LF EM+ +  ++PN ++ V +L  CS    L  
Sbjct: 329 ------------------HGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDE 370

Query: 276 G-----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
           G     +    + I   + H       ++D+  + G +     +  D     DA  W S+
Sbjct: 371 GLDYFDRMNDVYGIEPGVEH----YGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSV 426

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKP--DIITIVGVLSACGR 371
           ++    HG    AVL   ++V L  +   +++ +  V +A  R
Sbjct: 427 LNACRSHGDVDTAVLAAERLVALEPEDVGNLVMLANVYAAARR 469


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 187/532 (35%), Positives = 293/532 (55%), Gaps = 16/532 (3%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           S    +A   H LQ  +    L+   Q H Q+L  G I +   ++KL+   A C  P   
Sbjct: 13  SSESNAAQTLHLLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLL---AFCASPNSG 66

Query: 75  QL-----VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK 129
            L     VF+ I   + +++N++I GY  +    EAL L+ +M Y +V  + +T   + K
Sbjct: 67  SLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLK 126

Query: 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189
               +  L     IH   IK+GF  ++   NSL+++Y K G       LFD++ QR+  S
Sbjct: 127 ACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVS 186

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
           WN  I G+   G+  +   +  +F+ M  RN+ +WT+MI+G V  G   EAL LF  MQ 
Sbjct: 187 WNSMIDGYTKCGEIEM---AYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQT 243

Query: 250 KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
              I+ + V+LVS L  C+ L  L  GK IH +  + E+  D  L   LIDMY+KCG L+
Sbjct: 244 AG-IKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLE 302

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            A  VF      K    W++++SGY +HG+G EA+  + KM   G +P+ +T  G+L+AC
Sbjct: 303 EAIEVFRKME-EKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
             +GL++E   ++ S+   +  KP+ E   C+VD+LGRAG L  A + I+ MPV+P+ +I
Sbjct: 362 SHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAI 421

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489
           WGAL++A  +HGN E+     K LIQ++P +   Y+ L++++A++  W+  A +R  MK+
Sbjct: 422 WGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKE 481

Query: 490 RGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           +G+ K PGCS IS++G  H F   D++HP    I  ML+ ++  +R     P
Sbjct: 482 QGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKP 533


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 189/582 (32%), Positives = 309/582 (53%), Gaps = 69/582 (11%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   ++   LKL K+ H+Q++ +G +S+  + T L++ Y   G    ++ VF+ +  +DV
Sbjct: 169 LDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDV 228

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N +I GY K+    +A +LF  M      P+  +  +I       + L  G  +H  
Sbjct: 229 STFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQ 288

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA-------- 198
            +  G V DV +A +L+ MY+ CG       +FD+M  R+V SW V I G+A        
Sbjct: 289 CMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDA 348

Query: 199 ---------------------------SSGDFSL-------VVRS--------------- 209
                                      SS D SL       VVR+               
Sbjct: 349 FGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHM 408

Query: 210 ----------RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                     R+VFD M RR+V +W+AMI  YV+NG  +EA   F  M+ ++ +EP+ V+
Sbjct: 409 YAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMK-RNNVEPDVVT 467

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            +++L  C  L  L  G +I+  AI+ +L   + + NALI+M  K GS++ AR +FE+  
Sbjct: 468 YINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENM- 526

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D +TW+ ++ GY LHG   EA+ L+++M+    +P+ +T VGVLSAC R+G + EG 
Sbjct: 527 VQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGR 586

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             ++ +++   I PT E+  C+VD+LGRAG+LD A   I  MP++P+ SIW  L++A  +
Sbjct: 587 RFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRI 646

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           +GN ++ + A +  +  EP + + YV LS++YA++  W+ VA++R +M+ RG++K  GC+
Sbjct: 647 YGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCT 706

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           WI + GK H F V D++HP +  IY  L  L+  ++     P
Sbjct: 707 WIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIP 748



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 138/529 (26%), Positives = 237/529 (44%), Gaps = 74/529 (13%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           S +  S T     Q     R   L KQ    I+  G   N +    LI  +++CG   ++
Sbjct: 56  SNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEA 115

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI 134
           +  F+S+++K V  +N++I GY +     EA  LF  M    + P   T   +       
Sbjct: 116 RQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSP 175

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
             L +G   H   IK+GFV D  +  +L+SMYVK G       +FD + +R+V ++NV I
Sbjct: 176 AGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMI 235

Query: 195 SGHASSGD----FSLVVRSRR------------VFDQMKRRNVYAW-------------- 224
            G+A SGD    F L  R ++            + D        AW              
Sbjct: 236 GGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLV 295

Query: 225 ------TAMINGYV-------------------------------QNGDLDEALVLFLEM 247
                 TA+I  Y+                               +N ++++A  LF  M
Sbjct: 296 DDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATM 355

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
           Q ++ I+P++++ + ++  C+S   LS  ++IH   +R     D+ +  AL+ MY+KCG+
Sbjct: 356 Q-EEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGA 414

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           +  AR+VF D+   +D ++WS+++  Y  +G G EA   ++ M     +PD++T + +L+
Sbjct: 415 IKDARQVF-DAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLN 473

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           ACG  G ++ G+EIY   I    +     +   +++M  + G ++RA    + M V+   
Sbjct: 474 ACGHLGALDLGMEIYTQAIKADLVSHIP-VGNALINMNVKHGSIERARYIFENM-VQRDV 531

Query: 428 SIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
             W  ++    +HGN+ E  DL  + L +    N   +V +  L A SR
Sbjct: 532 VTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGV--LSACSR 578



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 156/337 (46%), Gaps = 38/337 (11%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  H +   A+   L L ++ HSQ++  G  ++  V T L+  YA CG    ++ VF+++
Sbjct: 366 TYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAM 425

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +DV  ++++I  YV+N    EA E F  M  +NV PD  T   +    G +  L++GM
Sbjct: 426 SRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGM 485

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            I+  +IK   V  + + N+L++M VK G       +F+ M QR+V +WNV         
Sbjct: 486 EIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNV--------- 536

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                    MI GY  +G+  EAL LF  M LK+R  PN V+ V
Sbjct: 537 -------------------------MIGGYSLHGNAREALDLFDRM-LKERFRPNSVTFV 570

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            VL  CS    +  G++   + +  + +   + L   ++D+  + G LD A  +      
Sbjct: 571 GVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPL 630

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
             ++  WS++++   ++G    A     +  CL S+P
Sbjct: 631 KPNSSIWSTLLAACRIYGNLDVAERAAER--CLMSEP 665


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 273/504 (54%), Gaps = 7/504 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ HSQI+ LG  ++     ++I   A+   G    +  VF+ I H D Y+YN++  GY+
Sbjct: 37  KQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYL 96

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           +       + ++S M + +VSP+ FT   + +       +  G  IH   +K GF  D  
Sbjct: 97  RWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGF 156

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
             N+L+ MYV      +   +FD MPQR+V SW   I+G++  G    V ++R VF+ M 
Sbjct: 157 SLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWG---FVDKAREVFELMP 213

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            RN  +W AMI  YVQ+  L EA  LF  M+L++ +  +K    S+L  C+ L  L  GK
Sbjct: 214 ERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVV-LDKFVAASMLSACTGLGALEQGK 272

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            IHG+  +  +  D  L   +IDMY KCG L+ A  VF +    K   +W+ ++ G  +H
Sbjct: 273 WIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELP-QKGISSWNCMIGGLAMH 331

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           GKG  A+ L+ +M      PD IT V VLSAC  SGL+ EG   +  +     +KP  E 
Sbjct: 332 GKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEH 391

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             C+VD+LGRAG L+ A   I  MPV P   + GALV A  +HGN+E+ +   K +I+LE
Sbjct: 392 FGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELE 451

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P N   YV L+NLYAS+ RW+ VA++R +M DRG+KK+PG S I        F    +AH
Sbjct: 452 PHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAH 511

Query: 518 PCSVSIYEMLDDLILIMRGAAASP 541
           P +  IY  LD+++  +R     P
Sbjct: 512 PQAKEIYAKLDEILETIRSIGYVP 535



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  K  H  I   G   +  ++T +I  Y  CG   ++  VFN +  K +  +N +I 
Sbjct: 267 ALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIG 326

Query: 95  GYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATI 127
           G +  HG  E A+ELF  M    V+PD  T   +
Sbjct: 327 G-LAMHGKGEAAIELFKEMEREMVAPDGITFVNV 359


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 189/526 (35%), Positives = 285/526 (54%), Gaps = 42/526 (7%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           +YTS      LQ     RSL   +Q H ++L  G   +  ++TKL+  YA CG    ++ 
Sbjct: 64  HYTSV-----LQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F+ +  ++V+L+N LI  Y ++  H  A++L+  M    V PD+FT     K    + D
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLD 178

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L  G  +H   +   +  D+ +   L+ MY KCG    C++                   
Sbjct: 179 LETGREVHERVLGTHWGEDMFVCAGLVDMYAKCG----CVD------------------- 215

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                       +R VFD+++ R+   W +MI  Y QNG   EAL L  +M   + + P 
Sbjct: 216 -----------DARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMA-ANGVGPT 263

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
             +LVS +   +    L  G+++HGF  R+  +    L  +L+DMY+K G +  AR +FE
Sbjct: 264 IATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFE 323

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLI 375
                ++ ++W++++ GYG+HG   EA+ L+NKM V     PD IT VGVLSAC   G++
Sbjct: 324 -QLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMV 382

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            E  E +  +++ Y IKPT +   C+VD+LG AG+ + A D IK MP++P   IWGAL++
Sbjct: 383 KEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLN 442

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
              +H N E+ +LA + LI+LEPE+  NYV LSN+YA S +W+  A +R +M +RGLKK 
Sbjct: 443 GCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKI 502

Query: 496 PGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            GCSWI + GKTH F V D +HP S  IYE L+ L  +M  A   P
Sbjct: 503 IGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMP 548


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 177/478 (37%), Positives = 273/478 (57%), Gaps = 44/478 (9%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +IT YA  G+  +++ +F+     DV+ + ++++GY++N    EA ELF  M   N    
Sbjct: 251 IITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNE--- 307

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
                                               +  N++++ YV+  +      LFD
Sbjct: 308 ------------------------------------VSWNAMLAGYVQGERVEMAKELFD 331

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            MP RNV +WN  I+G+A  G  S    ++ +FD+M +R+  +W AMI GY Q+G   EA
Sbjct: 332 VMPCRNVSTWNTMITGYAQCGKIS---EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEA 388

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF+ M+ ++    N+ S  S L TC+ ++ L  GKQ+HG  ++        + NAL+ 
Sbjct: 389 LRLFVLME-REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 447

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY KCGS++ A  +F++ +  KD ++W+++++GY  HG G EA+  +  M   G KPD  
Sbjct: 448 MYCKCGSIEEANDLFKEMA-GKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDA 506

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+V VLSAC  +GL+++G + ++++   Y ++P ++  AC+VD+LGRAG L+ A + +K 
Sbjct: 507 TMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKN 566

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP EP  +IWG L+ AS +HGN+E+ + A   +  +EPEN   YV LSNLYASS RW  V
Sbjct: 567 MPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDV 626

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
            +LR  M+D+G+KK PG SWI I  KTH FSV D+ HP    I+  L+DL L M+ A 
Sbjct: 627 GKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAG 684



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 197/432 (45%), Gaps = 38/432 (8%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +I+ Y   G+   ++++F+ +  +D+  +N +I GYV+N    +A ELF  M   +V   
Sbjct: 96  MISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSW 155

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
           +  L+  ++ +G + D     +   +  K     + +  N+L+S YV+  K  E   LF 
Sbjct: 156 NTILSGYAQ-NGCVDDAR--RVFDRMPEK-----NDVSWNALLSAYVQNSKLEEACVLFG 207

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                 + SWN  + G         +V +R+ FD MK R+V +W  +I GY QNG++DEA
Sbjct: 208 SRENWALVSWNCLLGGFVKK---KKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEA 264

Query: 241 LVLFLEMQLKD--------------RIEPNKVSLVSVLPTCSSL---IGLSGGKQIHGFA 283
             LF E  + D              R+      L   +P  + +     L+G  Q     
Sbjct: 265 RQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVE 324

Query: 284 IRKELN-----HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           + KEL       +VS  N +I  Y++CG +  A+ +F D    +D ++W+++++GY   G
Sbjct: 325 MAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF-DKMPKRDPVSWAAMIAGYSQSG 383

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
             +EA+ L+  M   G + +  +    LS C     +  G +++  ++     +    + 
Sbjct: 384 HSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GYETGCFVG 442

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--L 456
             ++ M  + G ++ A D  K M  +   S W  +++    HG  E     ++S+ +  L
Sbjct: 443 NALLLMYCKCGSIEEANDLFKEMAGKDIVS-WNTMIAGYSRHGFGEEALRFFESMKREGL 501

Query: 457 EPENPSNYVSLS 468
           +P++ +    LS
Sbjct: 502 KPDDATMVAVLS 513



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 202/435 (46%), Gaps = 66/435 (15%)

Query: 23  VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ 82
           +  F  +S  H SL   K+ ++   S    ++ F S+K  T   +  Q +Q++ +  S  
Sbjct: 3   IYKFGALSRRHTSLNGLKRRYNNANS----ASNFHSSKSSTQTQI--QKSQTKPLPKS-G 55

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNM-YYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             D+  +N  I+ Y++    +EAL +F  M  +S+VS +      +     E+      M
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFEL----ARM 111

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           L   +  +     D++  N ++  YV+     +   LF+ MP+R+V SWN  +SG+A +G
Sbjct: 112 LFDEMPER-----DLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNG 166

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
               V  +RRVFD+M  +N  +W A+++ YVQN  L+EA VLF   +          +LV
Sbjct: 167 ---CVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRE--------NWALV 215

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNH-----------DVSLCNALIDMYSKCGSLDC 310
           S     + L+G        GF  +K++             DV   N +I  Y++ G +D 
Sbjct: 216 S----WNCLLG--------GFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDE 263

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR++F++S  + D  TW+++VSGY  +    EA  L+++M     + + ++   +L+   
Sbjct: 264 ARQLFDESPVH-DVFTWTAMVSGYIQNRMVEEARELFDRM----PERNEVSWNAMLAGYV 318

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA--GQLDRALDFIKTMPVEPSPS 428
           +   +    E+++       + P   +      + G A  G++  A +    MP +  P 
Sbjct: 319 QGERVEMAKELFD-------VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPV 370

Query: 429 IWGALVSASVMHGNS 443
            W A+++     G+S
Sbjct: 371 SWAAMIAGYSQSGHS 385



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 2/218 (0%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+L KQ H +++  G+ +  FV   L+  Y  CG   ++  +F  +  KD+  +N++I 
Sbjct: 419 ALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIA 478

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG-MLIHGLSIKIGFV 153
           GY ++    EAL  F +M    + PDD T+  +         ++ G    H ++   G  
Sbjct: 479 GYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVR 538

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRV 212
            +      ++ +  + G   E  NL   MP + +   W   +      G+  L   +   
Sbjct: 539 PNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADK 598

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
              M+  N   +  + N Y  +G   +   L + M+ K
Sbjct: 599 IFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 636



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 130/320 (40%), Gaps = 46/320 (14%)

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV--------------SLVSVLP 265
           ++  W   I+ Y++ G   EAL +F  M     +  N +               L   +P
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP 117

Query: 266 T---CSSLIGLSGGKQIHGFAIRKEL-----NHDVSLCNALIDMYSKCGSLDCARRVFED 317
                S  + + G  +       +EL       DV   N ++  Y++ G +D ARRVF D
Sbjct: 118 ERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVF-D 176

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD--IITIVGVLSACGRSGLI 375
               K+ ++W++++S Y  + K  EA +L+      GS+ +  +++   +L    +   I
Sbjct: 177 RMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSRENWALVSWNCLLGGFVKKKKI 230

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            E  + ++S+     +   T     ++    + G++D A       PV    + W A+VS
Sbjct: 231 VEARQFFDSMKVRDVVSWNT-----IITGYAQNGEIDEARQLFDESPVHDVFT-WTAMVS 284

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
             +    + M + A +   ++   N  ++ ++   Y    R +   EL  +M  R +   
Sbjct: 285 GYI---QNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVS-- 339

Query: 496 PGCSWIS-IHGKTHCFSVAD 514
              +W + I G   C  +++
Sbjct: 340 ---TWNTMITGYAQCGKISE 356


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 181/514 (35%), Positives = 290/514 (56%), Gaps = 12/514 (2%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L +  Q H  I    +  + ++ + L+  Y+ C     +Q  F+ +  +++  +NSLI  
Sbjct: 167 LSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITC 226

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK-IGFVV 154
           Y +N    +ALE+F  M    + PD+ TLA+++     +  +  G+ IH   +K   +  
Sbjct: 227 YEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRN 286

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D++L N+L+ MY KC + +E   +FD MP R+V S    +SG+A +   S V  +R +F 
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKA---SSVKAARLMFS 343

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            M  RNV +W A+I GY QNG+ +EA+ LFL ++ ++ I P   +  ++L  C++L  L 
Sbjct: 344 NMMERNVVSWNALIAGYTQNGENEEAVRLFLLLK-RESIWPTHYTFGNLLNACANLADLK 402

Query: 275 GGKQIH------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            G+Q H      GF  +   + D+ + N+LIDMY KCG ++  R VFE     +D ++W+
Sbjct: 403 LGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFE-RMLERDNVSWN 461

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++ GY  +G G EA+ ++ +M+  G +PD +T++GVLSAC  +GL+ EG   + S+   
Sbjct: 462 AMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIE 521

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           + + P  +   C+VD+LGRAG LD A + I+TMP+EP   +WG+L++A  +HGN  +   
Sbjct: 522 HGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKY 581

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
             + L++++P N   YV LSN+YA   RW  V  +R  M+  G+ K PGCSWISI    H
Sbjct: 582 VAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLH 641

Query: 509 CFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
            F V DK HP    IY +L  L   M+     P 
Sbjct: 642 VFMVKDKRHPHKKDIYLILKILTEQMKRVGYVPE 675



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 150/282 (53%), Gaps = 5/282 (1%)

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           L+H   IK  F  ++ + N L+ +Y KCG   +   +FD M QRN  SWN  +       
Sbjct: 40  LVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTK-- 97

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
            F  +  +  +F  M  R+  +W AM++G+ Q    +EAL   ++M  +D +  N+ S  
Sbjct: 98  -FGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFV-LNEYSFG 155

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S L  C+ L+ LS G QIHG   +   + DV + +AL+DMYSKC  +  A+R F+D    
Sbjct: 156 SALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDV- 214

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           ++ ++W+S+++ Y  +G   +A+ ++ +M+  G +PD IT+  V SAC     I EGL+I
Sbjct: 215 RNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQI 274

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
           +  V+   + +    +   +VDM  +  +++ A      MP+
Sbjct: 275 HARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 196/429 (45%), Gaps = 83/429 (19%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+     L      +S+   +  H++I+     S  F+  +L+  Y  CG    ++ VF+
Sbjct: 19  SSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFD 78

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNM--------------------------Y 113
            +Q ++ + +N+++    K    +EAL LF  M                          +
Sbjct: 79  HMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRF 138

Query: 114 YSNVSPDDFTL------ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
             ++  +DF L      + +S  +G + DL++G+ IHGL  K  + +DV + ++L+ MY 
Sbjct: 139 VVDMHSEDFVLNEYSFGSALSACAG-LMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           KC   +     FD+M  RN+ SWN                                  ++
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWN----------------------------------SL 223

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I  Y QNG   +AL +F+ M +   IEP++++L SV   C+SL  +  G QIH   ++ +
Sbjct: 224 ITCYEQNGPAGKALEVFVRM-MNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHD 282

Query: 288 -LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
              +D+ L NAL+DMY+KC  ++ AR VF+     +D ++ +S+VSGY        A L+
Sbjct: 283 KYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL-RDVVSETSMVSGYAKASSVKAARLM 341

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-------TEICA 399
           ++ M+    + ++++   +++   ++G   E + ++  ++    I PT          CA
Sbjct: 342 FSNMM----ERNVVSWNALIAGYTQNGENEEAVRLF-LLLKRESIWPTHYTFGNLLNACA 396

Query: 400 CVVDM-LGR 407
            + D+ LGR
Sbjct: 397 NLADLKLGR 405



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 7/172 (4%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQIL------SLGHISNPFVSTKLITAYALCGQPT 72
           T  T  + L   A    LKL +Q+H+ IL        G  S+ FV   LI  Y  CG   
Sbjct: 384 THYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVE 443

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
             +LVF  +  +D   +N++I GY +N    EALE+F  M  S   PD  T+  +     
Sbjct: 444 DGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACS 503

Query: 133 EIKDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
               +  G      ++I+ G V        ++ +  + G   E  NL   MP
Sbjct: 504 HAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMP 555


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 179/543 (32%), Positives = 299/543 (55%), Gaps = 36/543 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVF 78
           S T+ + LQ  A  +SLKL K  H  +   G    N F++  LI  Y+ CG    +  VF
Sbjct: 50  SKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVF 109

Query: 79  NSIQHKDVYLYNSLINGYVK------------------------------NHGH-NEALE 107
           + +  +++Y +N +++GY K                                G  N+AL 
Sbjct: 110 DEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALR 169

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
            +  +    +  ++++ A +  +  ++K+L +    HG  +  GF+ ++++++S++  Y 
Sbjct: 170 FYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYA 229

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           KC +  +   LFDEM  R+V +W   +SG+A  GD   V  +R +FD M  +N  AWT++
Sbjct: 230 KCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGD---VEAARELFDLMPEKNPVAWTSL 286

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I GY ++    +AL LF +M +   I P++ +  S L   +S+  L+ GKQIHG+ IR  
Sbjct: 287 IAGYARHDLGHKALELFTKM-MALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTN 345

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
           +  +  + ++LIDMYSKCG L+  R VF+      D + W++I+S    HG+G EA+ ++
Sbjct: 346 IRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMF 405

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
           + MV LG KPD IT++ +L+AC  SGL+ EGL +Y S+ + + + P  E  AC++D+LGR
Sbjct: 406 DDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGR 465

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           AG  D  ++ ++ MP +P+  IW AL+    MHGN E      + +I+L+P++ + YV L
Sbjct: 466 AGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLL 525

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           S+++A+  RW+ V  +R +M +R ++K    SWI I  K H F+ +D+ HP    IY  L
Sbjct: 526 SSIHAAVGRWELVENVRQLMNERHVRKDRAISWIEIENKVHSFTASDRLHPLKEVIYLAL 585

Query: 528 DDL 530
             L
Sbjct: 586 KQL 588



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 172/409 (42%), Gaps = 84/409 (20%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           Y   +    L +    + L+L+KQ+H Q+L  G +SN  +S+ ++ AYA C +   ++ +
Sbjct: 181 YNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRL 240

Query: 78  FNSIQHKDVYLYNSLINGYVK--------------------------------NHGHNEA 105
           F+ +  +DV  + ++++GY +                                + GH +A
Sbjct: 241 FDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGH-KA 299

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           LELF+ M   N+ PD FT ++    S  I  LN G  IHG  I+     + I+ +SL+ M
Sbjct: 300 LELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDM 359

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM-KRRNVYAW 224
           Y KCG    CL +                               R VFD M  + +V  W
Sbjct: 360 YSKCG----CLEV------------------------------GRLVFDLMGDKWDVVLW 385

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI----- 279
             +I+   Q+G   EA+ +F +M ++  ++P++++L+ +L  CS    +  G ++     
Sbjct: 386 NTIISSLAQHGRGQEAIQMFDDM-VRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESIT 444

Query: 280 --HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
             HG       N +   C  LID+  + G  D      E      +   W++++    +H
Sbjct: 445 SCHGVIP----NQEHYAC--LIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMH 498

Query: 338 GKGHEAVLLYNKMVCLG--SKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           G       +  K++ L   S    + +  + +A GR  L+    ++ N 
Sbjct: 499 GNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNE 547


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 182/514 (35%), Positives = 286/514 (55%), Gaps = 5/514 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  + L+   + + +K  ++ H+ ++  G   + FVS  L+  Y  CG   + + VF+ +
Sbjct: 93  TFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEM 152

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           +   + L+  +I  YV      +ALELF  M    ++PD   ++T+    G + DL V  
Sbjct: 153 RQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAK 212

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H    K G  VD  ++++L+S Y +CG        F E P +N+  WN  I       
Sbjct: 213 AMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHN 272

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           +  L    +++F  M  R+V +W +MI G+ + G   EAL  F EM+    + PN ++L+
Sbjct: 273 NLEL---GKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSG-VSPNALTLL 328

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S L  C+S   L  G  IH +  + ++N D SL ++LIDMYSKCG +D A ++FE+S+  
Sbjct: 329 STLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEEST-R 387

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D  TW+SIV G  +HG+G +A+  ++KM     +PD +T+VGVLSAC  +GL+++G   
Sbjct: 388 RDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWY 447

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + S+   + + P  E    +VD+LGR G L  A D I  MP+E +  IWGA +SA  +H 
Sbjct: 448 FQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHN 507

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ ++A + L+ L P +P   V LSN+YA   +WD    LR  +K +GLKKSPGCS I
Sbjct: 508 NVELGEVAARRLLGLXPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSI 567

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            ++G  H F V D +HPC   I  M++ +  +MR
Sbjct: 568 EVNGSVHGFLVGDNSHPCYTEINSMVEKIEKLMR 601



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/481 (20%), Positives = 200/481 (41%), Gaps = 99/481 (20%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQIL------SLGHISNPFVSTKLITAYALCGQPTQS 74
           A +Q F Q+S T  S +L   ++   L      ++  + +P  +++L  A          
Sbjct: 3   ACMQRFPQLSHTRFSFRLHPLTNPNKLPRIHGNTIATVEDPSAASRLDCA---------- 52

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNH--GHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
                     +V+++N++I   V+N     +  L  +     + + P+  T   + K   
Sbjct: 53  ----------NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALV 102

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
             +++  G  +H   ++ GF     ++ +L+  YV CG   +   +FDE           
Sbjct: 103 SGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDE----------- 151

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                                  M++  +  WT +I  YV     ++AL LF  M+ +  
Sbjct: 152 -----------------------MRQPGLVLWTLIIRAYVCVTFPEKALELFRTMR-EVG 187

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           + P+ V++ +V+  C  L  L   K +H F  +  +  D  + + LI  Y +CGSLD A 
Sbjct: 188 LTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAY 247

Query: 313 RVFEDSSF------------------------------NKDAITWSSIVSGYGLHGKGHE 342
           R F+++                                ++D ++W+S++ G+   G+  E
Sbjct: 248 RFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQE 307

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+  +++M   G  P+ +T++  LSAC   G ++ G  I+ + ++   +     + + ++
Sbjct: 308 ALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIH-AYVDKNDMNRDGSLDSSLI 366

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI---QLEPE 459
           DM  + G +D+A+   +          W ++V    MHG  E + L Y S +   Q++P+
Sbjct: 367 DMYSKCGDIDKAVQIFEE-STRRDLFTWTSIVCGLAMHGRGE-KALHYFSKMKEAQVQPD 424

Query: 460 N 460
           +
Sbjct: 425 D 425


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 174/493 (35%), Positives = 295/493 (59%), Gaps = 7/493 (1%)

Query: 50  GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELF 109
           G  SN FV    I  ++LC     ++ VF+     +V  +N +++GY +     ++  LF
Sbjct: 137 GFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLF 196

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILANSLMSMYVK 168
             M    VSP+  TL  +     ++KDL  G  I+   I  G V  ++IL N L+ M+  
Sbjct: 197 IEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKY-INGGIVERNLILENVLIDMFAA 255

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG+  E  ++FD M  R+V SW   ++G A+ G   L   +R+ FDQ+  R+  +WTAMI
Sbjct: 256 CGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDL---ARKYFDQIPERDYVSWTAMI 312

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288
           +GY++     EAL LF EMQ+ + ++P++ ++VS+L  C+ L  L  G+ +  +  +  +
Sbjct: 313 DGYLRMNRFIEALALFREMQMSN-VKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSI 371

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
            +D  + NALIDMY KCG++  A++VF++   +KD  TW++++ G  ++G G EA+ +++
Sbjct: 372 KNDTFVGNALIDMYFKCGNVGKAKKVFKEMH-HKDKFTWTAMIVGLAINGHGEEALAMFS 430

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
            M+     PD IT +GVL AC  +G++ +G   + S+   + IKP      C+VD+LGRA
Sbjct: 431 NMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRA 490

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468
           G+L+ A + I  MPV+P+  +WG+L+ A  +H N ++ ++A K +++LEPEN + YV L 
Sbjct: 491 GRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLC 550

Query: 469 NLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
           N+YA+ +RW+ + ++R +M +RG+KK+PGCS + ++G  + F   D++HP S  IY  L+
Sbjct: 551 NIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLE 610

Query: 529 DLILIMRGAAASP 541
           +++  +  A  SP
Sbjct: 611 NMMQDLIKAGYSP 623



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 205/459 (44%), Gaps = 79/459 (17%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC-----GQPTQSQLVFNSIQHKDVYL 88
           +S+   KQ HS  + +G  S+P    ++I   A C     G+   ++ VF++I    +++
Sbjct: 18  KSMYQLKQIHSHTIKMGLSSDPLFQKRVI---AFCCAHESGKMIYARQVFDAIPQPTLFI 74

Query: 89  YNSLINGYVK-NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
           +N++I GY + NH  N  + ++  M  SN+ PD FT   + K       L  G ++   +
Sbjct: 75  WNTMIKGYSRINHPQN-GVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHA 133

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           +K GF  ++ +  + + M+  C        +FD      V +WN+ +SG+     F    
Sbjct: 134 VKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFK--- 190

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
           +S+ +F +M++R V                                 PN V+LV +L  C
Sbjct: 191 KSKMLFIEMEKRGV--------------------------------SPNSVTLVLMLSAC 218

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           S L  L GGK I+ +     +  ++ L N LIDM++ CG +D A+ VF D+  N+D I+W
Sbjct: 219 SKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVF-DNMKNRDVISW 277

Query: 328 SSIVSGYGLHGK------------------------GH-------EAVLLYNKMVCLGSK 356
           +SIV+G+   G+                        G+       EA+ L+ +M     K
Sbjct: 278 TSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVK 337

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD  T+V +L+AC   G +  G E   + I+   IK  T +   ++DM  + G + +A  
Sbjct: 338 PDEFTMVSILTACAHLGALELG-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKK 396

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
             K M        W A++    ++G+ E     + ++I+
Sbjct: 397 VFKEMH-HKDKFTWTAMIVGLAINGHGEEALAMFSNMIE 434



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 137/282 (48%), Gaps = 8/282 (2%)

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           ++ +R+VFD + +  ++ W  MI GY +       + ++L M L   I+P++ +   +L 
Sbjct: 57  MIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLM-LASNIKPDRFTFPFLLK 115

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
             +  + L  GK +   A++   + ++ +  A I M+S C  +D AR+VF D     + +
Sbjct: 116 GFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVF-DMGDAWEVV 174

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           TW+ ++SGY    +  ++ +L+ +M   G  P+ +T+V +LSAC +   +  G  IY   
Sbjct: 175 TWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIY-KY 233

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           IN   ++    +   ++DM    G++D A      M      S W ++V+      N   
Sbjct: 234 INGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVIS-WTSIVTG---FANIGQ 289

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRW-DAVAELRTM 486
            DLA K   Q+   +  ++ ++ + Y    R+ +A+A  R M
Sbjct: 290 IDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREM 331


>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
 gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
          Length = 551

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 276/469 (58%), Gaps = 13/469 (2%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H  ++ L    + +++T+++       + T +  VF  ++  +++L+N++I  Y +NH H
Sbjct: 34  HGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQH 93

Query: 103 NEALELFSNMYYSNVSPDD-------FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
            +A+ ++  M     SP D       FT   + K  G    L +G  +H   ++ G    
Sbjct: 94  RDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSS 153

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
            I+ NSL+ MY + G  +    +FDEM +R+V SWN+ IS HA  G      ++  +F+ 
Sbjct: 154 AIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMR---KATALFNS 210

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  + +  WTAM++GY   GD   A+  F  MQ +   EP+ VS+V+VLP C+ L  L  
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEG-FEPDDVSIVAVLPACAQLGALEL 269

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+ I+ +  R  +     +CNAL++MY+KCG +D A ++F D   +KD I+WS+++ G  
Sbjct: 270 GRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLF-DGMADKDVISWSTVIGGLA 328

Query: 336 LHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            HG+ HEAV L+ +M   G  +P++IT VG+LSAC  +GL++EGL  ++ + + Y ++P 
Sbjct: 329 AHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPG 388

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   CVVD+LGR+GQ+ RALD ++ MPV     +WG+L+SA   HG+ +   LA + L+
Sbjct: 389 VEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV 448

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           +LEP++  N V L+N+YA++RRW  VA  R  ++ R ++K+PGCS I +
Sbjct: 449 ELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEV 497



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 159/390 (40%), Gaps = 80/390 (20%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK--------------------- 60
           T    L+      +L+L KQ H+ ++  G  S+  V                        
Sbjct: 121 TYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEM 180

Query: 61  ----------LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
                     LI+A+A  GQ  ++  +FNS+  K +  + ++++GY     +  A++ F 
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
           +M      PDD ++  +     ++  L +G  I+    + G +    + N+LM MY KCG
Sbjct: 241 SMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCG 300

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
              + L LFD M  ++V SW                                  + +I G
Sbjct: 301 CIDQALQLFDGMADKDVISW----------------------------------STVIGG 326

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS--SLI--GLSGGKQIHG-FAIR 285
              +G   EA+ LF EM+ + ++ PN ++ V +L  CS   L+  GLS   +++  + + 
Sbjct: 327 LAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVE 386

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             + H       ++D+  + G +  A  +  D     DA  W S++S    HG    AVL
Sbjct: 387 PGVEH----YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVL 442

Query: 346 LYNKMVCLGSKPD----IITIVGVLSACGR 371
              ++V L  +PD    ++ +  V +A  R
Sbjct: 443 AAERLVEL--EPDDVGNLVMLANVYAAARR 470


>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
          Length = 551

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 276/469 (58%), Gaps = 13/469 (2%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H  ++ L    + +++T+++       + T +  VF  ++  +++L+N++I  Y +NH H
Sbjct: 34  HGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQH 93

Query: 103 NEALELFSNMYYSNVSPDD-------FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
            +A+ ++  M     SP D       FT   + K  G    L +G  +H   ++ G    
Sbjct: 94  RDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSS 153

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
            I+ NSL+ MY + G  +    +FDEM +R+V SWN+ IS HA  G      ++  +F+ 
Sbjct: 154 AIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMR---KATALFNS 210

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  + +  WTAM++GY   GD   A+  F  MQ +   EP+ VS+V+VLP C+ L  L  
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEG-FEPDDVSIVAVLPACAQLGALEL 269

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+ I+ +  R  +     +CNAL++MY+KCG +D A ++F D   +KD I+WS+++ G  
Sbjct: 270 GRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLF-DGMADKDVISWSTVIGGLA 328

Query: 336 LHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            HG+ HEAV L+ +M   G  +P++IT VG+LSAC  +GL++EGL  ++ + + Y ++P 
Sbjct: 329 AHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPG 388

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   CVVD+LGR+GQ+ RALD ++ MPV     +WG+L+SA   HG+ +   LA + L+
Sbjct: 389 VEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV 448

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           +LEP++  N V L+N+YA++RRW  VA  R  ++ R ++K+PGCS I +
Sbjct: 449 ELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEV 497



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 159/390 (40%), Gaps = 80/390 (20%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK--------------------- 60
           T    L+      +L+L KQ H+ ++  G  S+  V                        
Sbjct: 121 TYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEM 180

Query: 61  ----------LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
                     LI+A+A  GQ  ++  +FNS+  K +  + ++++GY     +  A++ F 
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
           +M      PDD ++  +     ++  L +G  I+    + G +    + N+LM MY KCG
Sbjct: 241 SMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCG 300

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
              + L LFD M  ++V SW                                  + +I G
Sbjct: 301 CIDQALQLFDGMADKDVISW----------------------------------STVIGG 326

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS--SLI--GLSGGKQIHG-FAIR 285
              +G   EA+ LF EM+ + ++ PN ++ V +L  CS   L+  GLS   +++  + + 
Sbjct: 327 LAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVE 386

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             + H       ++D+  + G +  A  +  D     DA  W S++S    HG    AVL
Sbjct: 387 PGVEH----YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVL 442

Query: 346 LYNKMVCLGSKPD----IITIVGVLSACGR 371
              ++V L  +PD    ++ +  V +A  R
Sbjct: 443 AAERLVEL--EPDDVGNLVMLANVYAAARR 470


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 175/513 (34%), Positives = 297/513 (57%), Gaps = 8/513 (1%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           FL+   T   LK+    H+ ++    I + F ++ LI+          +  VF  IQ+ +
Sbjct: 21  FLESCTTLSHLKII---HAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPN 77

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           +++YNS I G+  +   +++   +     + + PD+ T   + K   +   L++G+  HG
Sbjct: 78  LFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHG 137

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             I+ GF  DV + NSL++MY   G       +F  +   +V SW   ++G+  SGD   
Sbjct: 138 QIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGD--- 194

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  +R++FD+M  +N+  W+ MI+GY +N   D+A+ L+  +Q  + +  N+  +VSV+ 
Sbjct: 195 VTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQ-SEGVHANETVMVSVIA 253

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
           +C+ L  L  G++ H + +R ++  ++ L  AL+DMY++CGS+D A  VF D    +DA+
Sbjct: 254 SCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVF-DQLPGRDAL 312

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W+++++G+ +HG   +A+  +++M   G  P  IT   VLSAC   GL+  GLE++ S+
Sbjct: 313 SWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESM 372

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
              YRI+P  E   C+VD+LGRAG+L  A  F+  MP++P+  IWGAL+ A  +H NSE+
Sbjct: 373 KRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEI 432

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            + A K+LI+L+PE+   YV LSN+YA + +W+ V  +R MMK+RG+ K PG +   + G
Sbjct: 433 AERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDG 492

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
           K H F++ DK HP    I  M ++++  +R A 
Sbjct: 493 KVHKFTIGDKTHPEIQQIERMWEEILGKIRLAG 525


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 184/515 (35%), Positives = 284/515 (55%), Gaps = 12/515 (2%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           + LKL  Q H  I    +  + F+ + LI  Y+ CG    ++ VF+ ++ K+V  +N LI
Sbjct: 170 KDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLI 229

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG-F 152
             Y +N    EALE F  M      PD+ TLA++      +     G+ IH   +K   F
Sbjct: 230 TCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKF 289

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             D+IL N+L+ MY KCG+ +E   +FD MP RN  S    +SG+A S     V  +R +
Sbjct: 290 RNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSAS---VKAARSM 346

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
           F  +K++++ +W A+I GY QNG+ +EAL LF  M  ++ + P   +  ++L   ++L  
Sbjct: 347 FATIKQKDIVSWNALIAGYTQNGENEEALGLF-RMLKRESVCPTHYTFGNLLNASANLAD 405

Query: 273 LSGGKQIH------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           L  G+Q H      GF  +     D+ + N+LIDMY KCGS++   RVFE+    KD ++
Sbjct: 406 LELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENM-VEKDHVS 464

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++ GY  +G G EA+ L+ KM+  G KPD +T++G L AC  +GL+ EG   + S+ 
Sbjct: 465 WNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMT 524

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             + + P  +   C+VD+LGRAG L+ A D I++MP +P   +W +L+SA  +H N  + 
Sbjct: 525 KEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLG 584

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
               + + +++P +   YV L+N+Y+   RW     +R +M+ RG+ K PGCSWI I   
Sbjct: 585 KYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSN 644

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            H F V DK HP    IY +L  L   MR A   P
Sbjct: 645 VHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYVP 679



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 173/346 (50%), Gaps = 13/346 (3%)

Query: 113 YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
           ++++ SP     A +  L  +++       +HG  I+  F  +V + N L+ +Y KCG  
Sbjct: 20  FFTDSSP----FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYL 75

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                +FD M +RNV S+N  IS     G    V  S  +F  M  ++  +W +MI G+ 
Sbjct: 76  DYARKVFDRMSERNVFSFNSIISTLMRWG---FVDESAWLFSLMPEKDQCSWNSMIAGFA 132

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           Q+   +EAL  F+ M  +D    N  S  S L  CS L  L  G QIHG   + + + DV
Sbjct: 133 QHDRFEEALDWFVRMH-RDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDV 191

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            + + LID YSKCG + CARRVF D    K+ ++W+ +++ Y  +G   EA+  + +M  
Sbjct: 192 FMGSGLIDFYSKCGLVGCARRVF-DGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTE 250

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
           LG KPD +T+  V+SAC       EG++I+  V+ + + +    +   +VDM  + G+++
Sbjct: 251 LGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVN 310

Query: 413 RALDFIKTMPVEPSPS----IWGALVSASVMHGNSEMQDLAYKSLI 454
            A      MPV  + S    + G   SASV    S    +  K ++
Sbjct: 311 EARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIV 356



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 126/544 (23%), Positives = 222/544 (40%), Gaps = 109/544 (20%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+     L +    RS +  +  H +++        F+  +LI  Y  CG    ++ VF+
Sbjct: 24  SSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFD 83

Query: 80  SIQHKDVYLYNSLIN-------------------------------GYVKNHGHNEALEL 108
            +  ++V+ +NS+I+                               G+ ++    EAL+ 
Sbjct: 84  RMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDW 143

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           F  M+  +   +D++  +       +KDL +G  IHGL  K  + +DV + + L+  Y K
Sbjct: 144 FVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSK 203

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG       +FD M ++NV SWN                                   +I
Sbjct: 204 CGLVGCARRVFDGMEEKNVVSWN----------------------------------CLI 229

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE- 287
             Y QNG   EAL  F  M  +   +P++V+L SV+  C++L     G QIH   ++ + 
Sbjct: 230 TCYEQNGPAIEALEAFGRMT-ELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDK 288

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFE--------------------------DSSF- 320
             +D+ L NAL+DMY+KCG ++ AR VF+                           S F 
Sbjct: 289 FRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFA 348

Query: 321 ---NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               KD ++W+++++GY  +G+  EA+ L+  +      P   T   +L+A      +  
Sbjct: 349 TIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLEL 408

Query: 378 GLEIYNSVI-NTYRIK----PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           G + ++ V+ + +R +    P   +   ++DM  + G ++  L   + M VE     W  
Sbjct: 409 GRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENM-VEKDHVSWNT 467

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR----TMMK 488
           ++     +G   M+ L     +    E P +   +  L A S     V E R    +M K
Sbjct: 468 MIIGYAQNGYG-MEALELFQKMLESGEKPDHVTMIGTLCACSHA-GLVEEGRRYFFSMTK 525

Query: 489 DRGL 492
           + GL
Sbjct: 526 EHGL 529


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 183/512 (35%), Positives = 279/512 (54%), Gaps = 43/512 (8%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  ++ H  ++  G  +NPFV+T LI  YA  G    +  VF  +  ++V  + ++IN
Sbjct: 66  ALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMIN 125

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY+       A  LF      +++P+                                  
Sbjct: 126 GYITCCDLVTARRLF------DLAPER--------------------------------- 146

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D++L N+++S Y++         LFD+MP ++V SWN  ++G+AS+GD   V+   R+F+
Sbjct: 147 DIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGD---VMACERLFE 203

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  RNV++W A+I GY +NG   E L  F  M +   + PN  +LV+VL  C+ L  L 
Sbjct: 204 EMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALD 263

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK +H +A       +V + NAL+DMY+KCG ++ A  VF+ S  NKD I+W++I+ G 
Sbjct: 264 LGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFK-SMDNKDLISWNTIIGGL 322

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            +HG G +A+ L++ M   G  PD IT +G+L AC   GL+ +G   + S+ + Y I P 
Sbjct: 323 AVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPR 382

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+VD+LGRAG L  A+DFI+ MP+E    IW AL+ A  ++ N E+ +LA + LI
Sbjct: 383 IEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLI 442

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           + EP+NP+NYV LSN+Y    RW  VA L+  M+D G KK PGCS I ++     F   D
Sbjct: 443 EFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLIEVNDYLVEFYSLD 502

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
           + HP    IY  L  L  ++R +   P L ++
Sbjct: 503 ERHPEKEQIYGTLRTLTKLLRSSGYVPGLMEL 534



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 144/359 (40%), Gaps = 59/359 (16%)

Query: 3   LSSARNTFALVTSRNYT--SATVQHFLQVSATHRSLKL-TKQSHSQILSLGHISNPFVST 59
           L +AR  F L   R+    +  +  +++     R+ +L  K  +  ++S   + N     
Sbjct: 133 LVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLN----- 187

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVS 118
                YA  G     + +F  +  ++V+ +N+LI GY +N   +E L  F  M     V 
Sbjct: 188 ----GYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVV 243

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           P+D TL  +      +  L++G  +H  +   G+  +V + N+LM MY KCG     L++
Sbjct: 244 PNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDV 303

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F  M  +++ SWN  I G A  G  +                                  
Sbjct: 304 FKSMDNKDLISWNTIIGGLAVHGHGA---------------------------------- 329

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC--- 295
           +AL LF  M++     P+ ++ + +L  C+ +     G    GF+  K +  D S+    
Sbjct: 330 DALNLFSHMKIAGE-NPDGITFIGILCACTHM-----GLVEDGFSYFKSMTDDYSIVPRI 383

Query: 296 ---NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
                ++D+  + G L  A           DA+ W++++    ++     A L   K++
Sbjct: 384 EHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLI 442



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 2/126 (1%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           + +VFDQ+   N   W AM  GY QN    + +VLF +M+  D + PN  +   +L +C 
Sbjct: 4   AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLD-VMPNCFTFPVILKSCV 62

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            +  L  G+++H F I+     +  +   LIDMY+  G++  A RVF +    ++ I W+
Sbjct: 63  KINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGE-MIERNVIAWT 121

Query: 329 SIVSGY 334
           ++++GY
Sbjct: 122 AMINGY 127


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 173/452 (38%), Positives = 261/452 (57%), Gaps = 10/452 (2%)

Query: 87  YLYNSLINGYVKNHGH-----NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           +L+N+LI  +V+         +  + +F  M +  V PD  T   + +       L++G 
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGR 84

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   ++ G  +D  +  SL+SMY  CG       +FDE+PQ ++ SWN  I+ +  +G
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAG 144

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL--KDRIEPNKVS 259
              LV  +R +F  M  RNV +W+ MINGYV+ G   EAL LF EMQ+   + + PN+ +
Sbjct: 145 ---LVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFT 201

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +  VL  C  L  L  GK  H +  +  +  DV L  ALIDMY+KCGS++ A  VF +  
Sbjct: 202 MSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLG 261

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            NKD + WS+++SG  +HG   E V L++KM+  G +P+ +T + V  AC   GL++EG 
Sbjct: 262 PNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGK 321

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           +    +   Y I PT +   C+VD+ GRAG++  A + +K+MP+EP   +WGAL+S S M
Sbjct: 322 DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRM 381

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           HG+ E  +LA K LI+LEP N   YV LSN+YA   RW+ V  +R +M+  G+KK PGCS
Sbjct: 382 HGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCS 441

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
            I + G  H F V D +HP +  I+ ML++++
Sbjct: 442 LIEVGGVLHEFFVGDDSHPETRQIHMMLEEIL 473



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 153/373 (41%), Gaps = 81/373 (21%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    LQ  A+   L L +  H+QIL  G   +PFV T LI+ Y+ CG    ++ VF+ I
Sbjct: 66  TFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEI 125

Query: 82  QHKDVYLYNS-------------------------------LINGYVKNHGHNEALELFS 110
              D+  +NS                               +INGYV+   + EAL LF 
Sbjct: 126 PQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFR 185

Query: 111 NMYY---SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
            M     ++V P++FT++ +    G +  L  G   H    K G  VDV+L  +L+ MY 
Sbjct: 186 EMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYA 245

Query: 168 KCGKFSECLNLFDEM-PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
           KCG   +   +F  + P ++V +W                                  +A
Sbjct: 246 KCGSVEKATWVFSNLGPNKDVMAW----------------------------------SA 271

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           MI+G   +G  +E + LF +M +   + PN V+ ++V   C     + GG    G    +
Sbjct: 272 MISGLAMHGLAEECVGLFSKM-INQGVRPNAVTFLAVFCAC-----VHGGLVSEGKDYLR 325

Query: 287 ELNHDVSLC------NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
            +  D S+         ++D+Y + G +  A  V +      D + W +++SG  +HG  
Sbjct: 326 RMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDI 385

Query: 341 HEAVLLYNKMVCL 353
               L   K++ L
Sbjct: 386 ETCELALKKLIEL 398



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 23/249 (9%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI-QHKDVYLYNSLI 93
           +L+  K +H+ I   G   +  + T LI  YA CG   ++  VF+++  +KDV  ++++I
Sbjct: 214 ALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMI 273

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI------SKLSGEIKDLNVGMLIHGLS 147
           +G   +    E + LFS M    V P+  T   +        L  E KD      +  ++
Sbjct: 274 SGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKD-----YLRRMT 328

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLV 206
                +  +     ++ +Y + G+  E  N+   MP + +V  W   +SG    GD    
Sbjct: 329 EDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETC 388

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             + +   +++  N  A+  + N Y + G  ++         ++D +E   +  V   P 
Sbjct: 389 ELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDV------RHVRDLMETMGIKKV---PG 439

Query: 267 CSSLIGLSG 275
           C SLI + G
Sbjct: 440 C-SLIEVGG 447


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 178/502 (35%), Positives = 287/502 (57%), Gaps = 36/502 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H     LG  S+ ++   L+  Y+ CG    ++ VF+ + +K V  + ++I  Y + 
Sbjct: 157 KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 216

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
              +EA++LF  M  ++V P++ TL  +       +DL     +H    + G     +L 
Sbjct: 217 DLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLT 276

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           ++LM +Y KCG    C  L                              +R +F++M  +
Sbjct: 277 SALMDVYCKCG----CYPL------------------------------ARDLFNKMPEK 302

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N++ W  MING+V++ D +EAL LF EMQL   ++ +KV++ S+L  C+ L  L  GK +
Sbjct: 303 NLFCWNIMINGHVEDSDYEEALSLFNEMQLSG-VKGDKVTMASLLIACTHLGALELGKWL 361

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H +  ++++  DV+L  AL+DMY+KCGS++ A RVF++    KD +TW++++ G  + G+
Sbjct: 362 HVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIVGLAMCGQ 420

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           G +A+ L+++M     KPD IT VGVL+AC  +GL+NEG+  +NS+ N Y I+P+ E   
Sbjct: 421 GLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG 480

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VDMLGRAG++  A D I+ MP+ P   +   L+SA  +HGN  + + A + LI+L+P+
Sbjct: 481 CMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPK 540

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           N   YV LSN+Y+S + W+A  ++R +M +R +KK PGCS I + G  H F   D +HP 
Sbjct: 541 NGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQ 600

Query: 520 SVSIYEMLDDLILIMRGAAASP 541
           S  IYE LDD++  ++ A   P
Sbjct: 601 SSEIYETLDDMMRRLKSAGYVP 622



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 205/463 (44%), Gaps = 51/463 (11%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYAL--CGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ H+Q+L      +PF ++K++   AL   G    ++LVFN I +   +  NS+I GY 
Sbjct: 57  KQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYT 116

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
             +   +A+  +  M    + PD FT  ++ K  G + +   G  +H  S K+GF  D  
Sbjct: 117 NKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAY 173

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + N+LM+MY  CG       +FD+M  ++V S                            
Sbjct: 174 IQNTLMNMYSNCGCLVSARKVFDKMVNKSVVS---------------------------- 205

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
                 W  MI  Y Q     EA+ LF  M++   ++PN+++LV+VL  C+    L   K
Sbjct: 206 ------WATMIGAYAQWDLPHEAIKLFRRMEIAS-VKPNEITLVNVLTACARSRDLETAK 258

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           Q+H +     +     L +AL+D+Y KCG    AR +F      K+   W+ +++G+   
Sbjct: 259 QVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMP-EKNLFCWNIMINGHVED 317

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG--LEIYNSVINTYRIKPTT 395
               EA+ L+N+M   G K D +T+  +L AC   G +  G  L +Y   I   +I+   
Sbjct: 318 SDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVY---IEKEKIEVDV 374

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            +   +VDM  + G ++ A+   + MP E     W AL+    M G   ++ L     +Q
Sbjct: 375 ALGTALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIVGLAMCGQG-LKALELFHEMQ 432

Query: 456 LEPENPSNYVSLSNLYASSRRW---DAVAELRTMMKDRGLKKS 495
           +    P     +  L A S      + +A   +M    G++ S
Sbjct: 433 MSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPS 475



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 143/322 (44%), Gaps = 44/322 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L   A  R L+  KQ H  I   G   +  +++ L+  Y  CG    ++ +FN +
Sbjct: 240 TLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKM 299

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             K+++ +N +ING+V++  + EAL LF+ M  S V  D  T+A++      +  L +G 
Sbjct: 300 PEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGK 359

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H    K    VDV L  +L+ MY KCG     + +F EMP+++V +W           
Sbjct: 360 WLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTW----------- 408

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  TA+I G    G   +AL LF EMQ+ + ++P+ ++ V
Sbjct: 409 -----------------------TALIVGLAMCGQGLKALELFHEMQMSE-VKPDAITFV 444

Query: 262 SVLPTCSSLIGLSGG-----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            VL  CS    ++ G        + + I+  + H       ++DM  + G +  A  + +
Sbjct: 445 GVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHY----GCMVDMLGRAGRIAEAEDLIQ 500

Query: 317 DSSFNKDAITWSSIVSGYGLHG 338
           +     D      ++S   +HG
Sbjct: 501 NMPMAPDYFVLVGLLSACRIHG 522


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 176/485 (36%), Positives = 281/485 (57%), Gaps = 6/485 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K+ H+ I+  G   + F+ TK++      G    +  +FN + + +V+LYNS+I  Y  N
Sbjct: 27  KKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86

Query: 100 HGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
             + + + ++  +    +  PD FT   + K    +    +G  +HG   K G    V+ 
Sbjct: 87  SLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVT 146

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            N+L+ MY+K     +   +FDEM +R+V SWN  +SG+A  G      +++ +F  M  
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMK---KAKGLFHLMID 203

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           + + +WTAMI+GY   G   EA+  F EMQL   IEP+++SL+SVLP+C+ L  L  GK 
Sbjct: 204 KTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG-IEPDEISLISVLPSCAHLGSLELGKW 262

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           IH +A R+ L     +CNALI+MYSKCG L  A ++FE +   KD I+WS+++SGY  HG
Sbjct: 263 IHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTK-GKDVISWSTMISGYAYHG 321

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
             H A   + +M     KP+ IT +G+LSAC   GL  +GL+ ++ +   Y+I+P  E  
Sbjct: 322 NAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHY 381

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C++D+L RAG+L+RA++  KTMPV+P   IWG+L+S+    GN ++  +A   L+++EP
Sbjct: 382 GCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEP 441

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
           ++  NYV L+N+YA   +W+ V+ LR +++   +KK+PGCS I ++     F   D + P
Sbjct: 442 DDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVNNIVQEFVAGDNSKP 501

Query: 519 CSVSI 523
               I
Sbjct: 502 FWTEI 506



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 138/344 (40%), Gaps = 69/344 (20%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T     +  A+  S  L KQ H  +   G   +      LI  Y        +  VF+ +
Sbjct: 111 TFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEM 170

Query: 82  QHKDVYLYNSLINGYV------KNHG-------------------------HNEALELFS 110
             +DV  +NSL++GY       K  G                         + EA++ F 
Sbjct: 171 SERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFR 230

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M  + + PD+ +L ++      +  L +G  IH  + + G +    + N+L+ MY KCG
Sbjct: 231 EMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCG 290

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
             S+ + LF++   ++V SW+  ISG+A  G+      + R F+                
Sbjct: 291 MLSQAIQLFEQTKGKDVISWSTMISGYAYHGN------AHRAFET--------------- 329

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL--SGGKQIHGFAIRKEL 288
                        F+EMQ + +++PN ++ + +L  CS  +GL   G K         ++
Sbjct: 330 -------------FIEMQ-RAKVKPNGITFLGLLSACSH-VGLWQQGLKYFDMMRQDYQI 374

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
              +     LID+ ++ G L+ A  + +      D+  W S++S
Sbjct: 375 EPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLS 418



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 14/181 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SL+L K  H      G +    V   LI  Y+ CG  +Q+  +F   + KDV  ++++I+
Sbjct: 256 SLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMIS 315

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLS----IK 149
           GY  +   + A E F  M  + V P+  T L  +S  S      +VG+   GL     ++
Sbjct: 316 GYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACS------HVGLWQQGLKYFDMMR 369

Query: 150 IGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLV 206
             + ++  + +   L+ +  + GK    + +   MP + +   W   +S   + G+  + 
Sbjct: 370 QDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVA 429

Query: 207 V 207
           +
Sbjct: 430 L 430


>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
          Length = 551

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 276/469 (58%), Gaps = 13/469 (2%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H  ++ L    + +++T+++       + T +  VF  ++  +++L+N++I  Y +NH H
Sbjct: 34  HGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQH 93

Query: 103 NEALELFSNMYYSNVSPDD-------FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
            +A+ ++  M     SP D       FT   + K  G    L +G  +H   ++ G    
Sbjct: 94  RDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSS 153

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
            I+ NSL+ MY + G  +    +FDEM +R+V SWN+ IS HA  G      ++  +F+ 
Sbjct: 154 AIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMR---KATALFNS 210

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  + +  WTAM++GY   GD   A+  F  MQ +   EP+ VS+V+VLP C+ L  L  
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEG-FEPDDVSIVAVLPACAQLGTLEL 269

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+ I+ +  R  +     +CNAL++MY+KCG +D A ++F D   +KD I+WS+++ G  
Sbjct: 270 GRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLF-DGMADKDVISWSTVIGGLA 328

Query: 336 LHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            HG+ HEAV L+ +M   G  +P++IT VG+LSAC  +GL++EGL  ++ + + Y ++P 
Sbjct: 329 AHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPG 388

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   CVVD+LGR+GQ+ RALD ++ MPV     +WG+L+SA   HG+ +   LA + L+
Sbjct: 389 VEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV 448

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           +LEP++  N V L+N+YA++RRW  VA  R  ++ R ++K+PGCS I +
Sbjct: 449 ELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEV 497



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 159/390 (40%), Gaps = 80/390 (20%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK--------------------- 60
           T    L+      +L+L KQ H+ ++  G  S+  V                        
Sbjct: 121 TYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEM 180

Query: 61  ----------LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
                     LI+A+A  GQ  ++  +FNS+  K +  + ++++GY     +  A++ F 
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
           +M      PDD ++  +     ++  L +G  I+    + G +    + N+LM MY KCG
Sbjct: 241 SMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCG 300

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
              + L LFD M  ++V SW                                  + +I G
Sbjct: 301 CIDQALQLFDGMADKDVISW----------------------------------STVIGG 326

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS--SLI--GLSGGKQIHG-FAIR 285
              +G   EA+ LF EM+ + ++ PN ++ V +L  CS   L+  GLS   +++  + + 
Sbjct: 327 LAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVE 386

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             + H       ++D+  + G +  A  +  D     DA  W S++S    HG    AVL
Sbjct: 387 PGVEH----YGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVL 442

Query: 346 LYNKMVCLGSKPD----IITIVGVLSACGR 371
              ++V L  +PD    ++ +  V +A  R
Sbjct: 443 AAERLVEL--EPDDVGNLVMLANVYAAARR 470


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 170/456 (37%), Positives = 269/456 (58%), Gaps = 7/456 (1%)

Query: 86  VYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           ++LYN LI  Y  +  H ++   L+S M   +  P+  T   +      +   ++G ++H
Sbjct: 47  LFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLH 106

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
              IK GF  D+  A +L+ MY K G       LFD+MP R V +WN  ++GHA  GD  
Sbjct: 107 THFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMD 166

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           + +    +F  M  RNV +WT MI+GY ++    EAL LFL M+ +  + PN V+L S+ 
Sbjct: 167 VALE---LFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIF 223

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
           P  ++L  L  G+++  +A +     ++ + NA+++MY+KCG +D A +VF +    ++ 
Sbjct: 224 PAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNL 283

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
            +W+S++ G  +HG+  + + LY++M+  G+ PD +T VG+L AC   G++ +G  I+ S
Sbjct: 284 CSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKS 343

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +  ++ I P  E   C+VD+LGRAGQL  A + I+ MP++P   IWGAL+ A   H N E
Sbjct: 344 MTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVE 403

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           + ++A +SL  LEP NP NYV LSN+YAS+ +WD VA+LR +MK   + KS G S+I   
Sbjct: 404 LAEIAAESLFALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEG 463

Query: 505 GKTHCFSVADKAHPCSVSIYEMLD---DLILIMRGA 537
           G+ H F V D++HP S  I+ +LD   ++I + R A
Sbjct: 464 GQLHKFIVEDRSHPESNEIFALLDGVYEMIKLNRSA 499



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 121/284 (42%), Gaps = 46/284 (16%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSP 119
           ++  +A  G    +  +F  +  ++V  + ++I+GY ++  + EAL LF  M     + P
Sbjct: 155 MMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMP 214

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +  TLA+I      +  L +G  +   + K GF  ++ ++N+++ MY KCGK      +F
Sbjct: 215 NAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVF 274

Query: 180 DEMPQ-RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           +E+   RN+ SWN  I G A  G+     ++ +++DQM                      
Sbjct: 275 NEIGSLRNLCSWNSMIMGLAVHGE---CCKTLKLYDQM---------------------- 309

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH-----GFAIRKELNHDVS 293
                     L +   P+ V+ V +L  C+    +  G+ I       F I  +L H   
Sbjct: 310 ----------LGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEH--- 356

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
               ++D+  + G L  A  V +      D++ W +++     H
Sbjct: 357 -YGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFH 399



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 107/267 (40%), Gaps = 36/267 (13%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           + +V     +  ++ +  +I  Y  +              L     PN+ +   +   C+
Sbjct: 35  AHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACT 94

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED------SSFN- 321
           SL   S G+ +H   I+     D+    AL+DMY+K G+L+ AR++F+        ++N 
Sbjct: 95  SLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNA 154

Query: 322 -----------------------KDAITWSSIVSGYGLHGKGHEAVLLYNKMVC-LGSKP 357
                                  ++ ++W++++SGY    K  EA+ L+ +M    G  P
Sbjct: 155 MMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMP 214

Query: 358 DIITIVGVLSACGRSGLINEG--LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
           + +T+  +  A    G +  G  +E Y      ++      +   V++M  + G++D A 
Sbjct: 215 NAVTLASIFPAFANLGALEIGQRVEAYARKNGFFK---NLYVSNAVLEMYAKCGKIDVAW 271

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGN 442
                +    +   W +++    +HG 
Sbjct: 272 KVFNEIGSLRNLCSWNSMIMGLAVHGE 298



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 98/218 (44%), Gaps = 12/218 (5%)

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           KQIHG+ +R  ++    L   L+++     +L  A +V   S        ++ ++  Y  
Sbjct: 5   KQIHGYTLRNGIDQTKILIEKLLEI----PNLHYAHKVLHHSP-KPTLFLYNKLIQAYSS 59

Query: 337 HGK-GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           H +  H+   LY++M+     P+  T   + SAC      + G  ++   I +   +P  
Sbjct: 60  HPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKS-GFEPDL 118

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
                ++DM  + G L+ A      MPV   P+ W A+++     G+    D+A +    
Sbjct: 119 FAATALLDMYTKVGTLELARKLFDQMPVRGVPT-WNAMMAGHARFGD---MDVALELFRL 174

Query: 456 LEPENPSNYVSLSNLYASSRRW-DAVAELRTMMKDRGL 492
           +   N  ++ ++ + Y+ S+++ +A+     M +++G+
Sbjct: 175 MPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGM 212


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 182/485 (37%), Positives = 283/485 (58%), Gaps = 6/485 (1%)

Query: 46  ILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA 105
           +  +G      V   LI  YA  G    ++ VF+    KDV  + ++I+GY  +    EA
Sbjct: 283 VWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEA 342

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           +E+F  M  S+V P++ TL  +     ++ +L +G  +H    +      + L N+L+ M
Sbjct: 343 MEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDM 402

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           YVKC    +   LFD M  ++V SW   ++G+A  GD      +RR FDQ  R+N   W+
Sbjct: 403 YVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLE---SARRFFDQTPRKNAVCWS 459

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-FAI 284
           AMI GY QN    E+L LF EM ++  + P + +LVSVL  C  L  L+ G  IH  F +
Sbjct: 460 AMIAGYSQNNKPKESLKLFHEM-MERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVV 518

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
            K +   V+L NA++DMY+KCGS+D A  VF      ++ I+W+++++GY  +G+  +A+
Sbjct: 519 GKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMP-ERNLISWNTMIAGYAANGRAKQAI 577

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            ++++M  +G +P+ IT V +L+AC   GLI+EG E ++++   Y IKP     AC+VD+
Sbjct: 578 NVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDL 637

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           LGR G L+ A   I  MP++P  + WGAL++A  MHGN E+  L+  +L++L+PE+   Y
Sbjct: 638 LGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIY 697

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           V L+N  A+ R+W  V  +R++MKD+G+KK PG S I I G    F VAD++HP S  IY
Sbjct: 698 VLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESHPQSEEIY 757

Query: 525 EMLDD 529
           ++  D
Sbjct: 758 KLECD 762



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/468 (24%), Positives = 213/468 (45%), Gaps = 73/468 (15%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNSL 92
           +++  KQ  +++   G I++ F  +++I   AL   G    +  +FN ++  + +++N++
Sbjct: 169 TMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTM 228

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           I GY        A   F  M+   V  D  +     K   + + +  G  ++ +  K+GF
Sbjct: 229 IRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGF 288

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             ++++ N L+  Y + G       +FDE   ++V +W                      
Sbjct: 289 DCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTW---------------------- 326

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
                       T MI+GY  +   +EA+ +F E+ L   +EPN+V+L++V+  CS +  
Sbjct: 327 ------------TTMIDGYAAHDCSEEAMEVF-ELMLLSHVEPNEVTLIAVVSACSDMGN 373

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDM------------------------------- 301
           L  GK++H     K +   +SL NAL+DM                               
Sbjct: 374 LEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNG 433

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y+KCG L+ ARR F D +  K+A+ WS++++GY  + K  E++ L+++M+  G  P   T
Sbjct: 434 YAKCGDLESARRFF-DQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHT 492

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
           +V VLSACG+   +N G  I+   +    I  +  +   +VDM  + G +D A +   TM
Sbjct: 493 LVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTM 552

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSL--IQLEPENPSNYVSL 467
           P E +   W  +++    +G ++     +  +  +  EP N + +VSL
Sbjct: 553 P-ERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNIT-FVSL 598


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 189/502 (37%), Positives = 287/502 (57%), Gaps = 32/502 (6%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           + +V   L+  YA  G+    + VF  +  +DV  +N LI+GYVK   + +A+++F  M 
Sbjct: 166 DTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQ 225

Query: 114 Y-SNVSPDDFTLATISKLSGEIKDLNVGMLIH-------GLSIKIGFVVDVILANSLMSM 165
             S++ P++ T+ +       +K L +G  IH       G +IKIG        N+L+ M
Sbjct: 226 QQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIG--------NALVDM 277

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y KCG  S    +F++MP + V  W   +SG+ + G       +R +F++   R+V  WT
Sbjct: 278 YCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLD---EARELFERSPVRDVVLWT 334

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           AMINGYVQ    D+A+ LF EMQ+K R+ P++ +LV++L  C+ L  L  GK IHG+   
Sbjct: 335 AMINGYVQFNRFDDAVALFREMQIK-RVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDE 393

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
            ++  D  +  ALI+MY+KCG ++ +  +F      KD  +W+SI+ G  ++GK  +A+ 
Sbjct: 394 NKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLK-EKDTASWTSIICGLAMNGKTSKALE 452

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           L+ +MV  G KPD IT +GVLSAC   GL+ EG + + S+   Y+I+P  E   C++D+L
Sbjct: 453 LFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLL 512

Query: 406 GRAGQLDRALDFIKTMP---VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           GRAGQLD A + I+  P    E    ++GAL+SA   HGN EM +   K L+ +E  + S
Sbjct: 513 GRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSS 572

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            +  L+N+YAS+ RW+ V ++R  MKD G+KK PGCS + ++G  H F V D +HP    
Sbjct: 573 VHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMRE 632

Query: 523 IYEMLDDLILIMRGAAASPHLG 544
           IY MLD +        A P LG
Sbjct: 633 IYSMLDSI--------AKPLLG 646



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 218/479 (45%), Gaps = 78/479 (16%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L TS ++T  +    L+     +S++  KQ  +QIL  G   +     K +     C  P
Sbjct: 24  LSTSSHFTKKSCIFLLK---NCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVC---CTDP 77

Query: 72  TQSQL-----VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
           +   L     +FN I    +++YN +I  + KN    +A+ LF  +    +SPD+FT   
Sbjct: 78  SIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPF 137

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           + K  G + ++  G  ++G  +K G   D  + NSLM MY + G+      +F+EMPQR+
Sbjct: 138 VFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRD 197

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           V SWNV ISG+         V+ RR                          ++A+ +F  
Sbjct: 198 VVSWNVLISGY---------VKCRR-------------------------YEDAVDVFRR 223

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           MQ +  + PN+ ++VS L  C +L  L  GK+IH + +R++L   + + NAL+DMY KCG
Sbjct: 224 MQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY-VREQLGFTIKIGNALVDMYCKCG 282

Query: 307 SLDCARRVFEDSSFN------------------------------KDAITWSSIVSGYGL 336
            L  AR +F D                                  +D + W+++++GY  
Sbjct: 283 HLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQ 342

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
             +  +AV L+ +M      PD  T+V +L+ C + G + +G  I+   I+  +I     
Sbjct: 343 FNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIH-GYIDENKIMIDAV 401

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           +   +++M  + G ++++L+    +  E   + W +++    M+G +      +  ++Q
Sbjct: 402 VGTALIEMYAKCGFIEKSLEIFNGLK-EKDTASWTSIICGLAMNGKTSKALELFAEMVQ 459


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 195/599 (32%), Positives = 309/599 (51%), Gaps = 75/599 (12%)

Query: 13   VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
            +T  +YT + +   L+  AT   +   K+ H  +  LG  S   V   LI  Y   G+  
Sbjct: 549  ITGNSYTFSCI---LKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVD 605

Query: 73   QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
             +  +F+ +  +DV  +NS+I+G V N   + ALE F  M    V  D  TL        
Sbjct: 606  SAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACA 665

Query: 133  EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
             +  L++G  +HG  +K  F  +V+  N+L+ MY KCG  ++ +  F++M Q+ V SW  
Sbjct: 666  NVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTS 725

Query: 193  RISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWT----------------------- 225
             I+ +   G +   +   R+F +M+ +    +VY+ T                       
Sbjct: 726  LIAAYVREGLYDDAI---RLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR 782

Query: 226  ------------AMINGYVQNGDLDEALVLFLEMQLKDRI-------------------- 253
                        A+++ Y + G ++EA ++F ++ +KD +                    
Sbjct: 783  KNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALK 842

Query: 254  ---------EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
                      P+ +++  +LP C SL  L  G+ IHG  +R   + ++ + NALIDMY K
Sbjct: 843  LFAEMQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVK 902

Query: 305  CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
            CGSL  AR +F D    KD ITW+ ++SG G+HG G+EA+  + KM   G KPD IT   
Sbjct: 903  CGSLVHARLLF-DMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTS 961

Query: 365  VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
            +L AC  SGL+NEG   +NS+I+   ++P  E  AC+VD+L R G L +A + I+TMP++
Sbjct: 962  ILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIK 1021

Query: 425  PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484
            P  +IWGAL+    +H + E+ +   + + +LEP+N   YV L+N+YA + +W+ V +LR
Sbjct: 1022 PDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLR 1081

Query: 485  TMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
              +  RGLKKSPGCSWI + GK   F  AD AHP + SI+ +L++L + M+    SP +
Sbjct: 1082 ERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKM 1140



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 211/445 (47%), Gaps = 42/445 (9%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI-QHKD 85
           LQ+ A H+ L+  K  HS I S G      +  KL+  Y  CG   + + +F+ I     
Sbjct: 458 LQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNK 517

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           V+L+N +++ Y K   + E++ LF  M    ++ + +T + I K    +  +     IHG
Sbjct: 518 VFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHG 577

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
              K+GF     + NSL++ Y K G+      LFDE+  R+V SWN              
Sbjct: 578 CVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWN-------------- 623

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                               +MI+G V NG    AL  F++M L  R+  +  +LV+ + 
Sbjct: 624 --------------------SMISGCVMNGFSHSALEFFVQM-LILRVGVDLATLVNSVA 662

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C+++  LS G+ +HG  ++   + +V   N L+DMYSKCG+L+ A + FE     K  +
Sbjct: 663 ACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMG-QKTVV 721

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W+S+++ Y   G   +A+ L+ +M   G  PD+ ++  VL AC     +++G +++N  
Sbjct: 722 SWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHN-Y 780

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           I    +     +   ++DM  + G ++ A      +PV+   S W  ++     +  + +
Sbjct: 781 IRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVS-WNTMIGG---YSKNSL 836

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNL 470
            + A K   +++ E+  + ++++ L
Sbjct: 837 PNEALKLFAEMQKESRPDGITMACL 861



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 161/353 (45%), Gaps = 44/353 (12%)

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           ++I +L  E K L  G ++H +    G  ++ +L   L+ MYV CG   E          
Sbjct: 455 SSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALRE---------- 504

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN-VYAWTAMINGYVQNGDLDEALVL 243
                                    RR+FD +   N V+ W  M++ Y + GD  E++ L
Sbjct: 505 ------------------------GRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYL 540

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           F +MQ K  I  N  +   +L   ++L  +   K+IHG   +       ++ N+LI  Y 
Sbjct: 541 FKKMQ-KLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYF 599

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           K G +D A ++F D   ++D ++W+S++SG  ++G  H A+  + +M+ L    D+ T+V
Sbjct: 600 KSGEVDSAHKLF-DELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLV 658

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
             ++AC   G ++ G  ++   +     +        ++DM  + G L+ A+   + M  
Sbjct: 659 NSVAACANVGSLSLGRALHGQGVKACFSREVM-FNNTLLDMYSKCGNLNDAIQAFEKMGQ 717

Query: 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYVSLSNLYASS 474
           +   S W +L++A V  G   + D A +   ++E +  +P  Y   S L+A +
Sbjct: 718 KTVVS-WTSLIAAYVREG---LYDDAIRLFYEMESKGVSPDVYSMTSVLHACA 766



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 27/227 (11%)

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I  + + GDL  A+ L L M  K  ++ N  S  S+L  C+    L  GK +H       
Sbjct: 425 ICKFCEVGDLRNAVEL-LRMSQKSELDLNAYS--SILQLCAEHKCLQEGKMVHSVISSNG 481

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
           +  +  L   L+ MY  CG+L   RR+F+    +     W+ ++S Y   G   E++ L+
Sbjct: 482 IPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLF 541

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINE-----------GLEIYNSVINTYRIKPTTE 396
            KM  LG   +  T   +L      G + E           G   YN+V+N+        
Sbjct: 542 KKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNS-------- 593

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
               ++    ++G++D A      +      S W +++S  VM+G S
Sbjct: 594 ----LIATYFKSGEVDSAHKLFDELGDRDVVS-WNSMISGCVMNGFS 635


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 183/520 (35%), Positives = 279/520 (53%), Gaps = 35/520 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A    LKL K  H   +     S+    T L++ YA CG  T +   FN +
Sbjct: 432 TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D+  +NSLINGY +      A+++F  +  S ++PD  T+  +      + DL+ G 
Sbjct: 492 SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IHGL +K+GF  D  + N+L+ MY KCG       LF++                    
Sbjct: 552 CIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKT------------------- 592

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           DF+              ++   W  +I  Y+QNG   EA+  F +M+L++   PN V+ V
Sbjct: 593 DFT--------------KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLEN-FHPNSVTFV 637

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVLP  + L     G   H   I+     +  + N+LIDMY+KCG L  + ++F +   +
Sbjct: 638 SVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMD-H 696

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD ++W++++SGY +HG G  A+ L++ M     + D ++ V VLSAC   GL+ EG +I
Sbjct: 697 KDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKI 756

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++S+ + Y IKP  E  AC+VD+LGRAG  D  L FIK MPVEP   +WGAL+ +  MH 
Sbjct: 757 FHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHS 816

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N ++ ++A   L++LEP NP+++V LS++YA S RW    + R+ M D GLKK+PGCSW+
Sbjct: 817 NVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWV 876

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            +  K H F V DK+HP   S++ + + L+  M      P
Sbjct: 877 ELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVP 916



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 205/420 (48%), Gaps = 42/420 (10%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           VS  LI  Y+ CG    ++ VF+ +  +D   + +++ GY  N    E LELF  M   N
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           V  +  +  +    + E  DL  G  IHG +++     D+++A  LM MY KCG+     
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGE----- 379

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
                                          +++++F  ++ R++ AW+A+I   VQ G 
Sbjct: 380 -----------------------------TEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
            +EAL LF EMQ   +++PN+V+L+S+LP C+ L  L  GK IH F ++ +++ D+S   
Sbjct: 411 PEEALSLFQEMQ-NQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGT 469

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           AL+ MY+KCG    A   F   S ++D +TW+S+++GY   G  + A+ ++ K+      
Sbjct: 470 ALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN 528

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD  T+VGV+ AC     +++G  I+  ++     +    +   ++DM  + G L  A  
Sbjct: 529 PDAGTMVGVVPACALLNDLDQGTCIHGLIVK-LGFESDCHVKNALIDMYAKCGSLPSAEF 587

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLSNLYASS 474
                        W  +++A + +G+++    A  S  Q+  EN  P++   +S L A++
Sbjct: 588 LFNKTDFTKDEVTWNVIIAAYMQNGHAKE---AISSFHQMRLENFHPNSVTFVSVLPAAA 644



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 132/525 (25%), Positives = 225/525 (42%), Gaps = 75/525 (14%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           +++  + F  ++S  YT+    H+ ++ ++ + L    Q H+QI+  G   +  + T LI
Sbjct: 14  IATXASEFPSLSSSTYTNYL--HYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI-THLI 70

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
             Y+L  +   ++ VF+S  +    L+NS+I  Y ++  +NEALE++  M    + PD +
Sbjct: 71  NLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKY 130

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS--------- 173
           T   + K      +L  G+  HG   + G   DV +   L+ MY K G            
Sbjct: 131 TFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM 190

Query: 174 ----------------------ECLNLFDEMPQRNVGSWNVR------------------ 193
                                 E ++ F  M    V   +V                   
Sbjct: 191 PKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCR 250

Query: 194 -ISGHASSGDFSLVVR---------------SRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
            I G+    DFS  V                +RRVFDQM  ++  +W  M+ GY  NG  
Sbjct: 251 SIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCF 310

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
            E L LF +M+L + +  NKVS VS     +  I L  GK+IHG A+++ ++ D+ +   
Sbjct: 311 VEVLELFDKMKLGN-VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATP 369

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           L+ MY+KCG  + A+++F      +D + WS+I++     G   EA+ L+ +M     KP
Sbjct: 370 LMVMYAKCGETEKAKQLFWGLQ-GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKP 428

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           + +T++ +L AC    L+  G  I+   +    +         +V M  + G    AL  
Sbjct: 429 NRVTLMSILPACADLSLLKLGKSIHCFTVKA-DMDSDLSTGTALVSMYAKCGFFTAALTT 487

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENP 461
              M      + W +L++     G+     D+ YK  ++L   NP
Sbjct: 488 FNRMSSRDIVT-WNSLINGYAQIGDPYNAIDMFYK--LRLSAINP 529



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 6/194 (3%)

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           QIH   I     H  S+ + LI++YS     D AR VF DS+ N   I W+S++  Y   
Sbjct: 50  QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVF-DSTPNPSRILWNSMIRAYTRS 107

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
            + +EA+ +Y  MV  G +PD  T   VL AC  +  + EG+  ++  I+   ++    I
Sbjct: 108 KQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGV-WFHGEIDRRGLERDVFI 166

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            A +VDM  + G L RA +    MP     + W A++ A +       + + +   +QL 
Sbjct: 167 GAGLVDMYSKMGDLKRAREVFDKMPKRDVVA-WNAMI-AGLSQSEDPCEAVDFFRSMQLV 224

Query: 458 PENPSNYVSLSNLY 471
              PS+ VSL NL+
Sbjct: 225 GVEPSS-VSLLNLF 237


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 282/541 (52%), Gaps = 40/541 (7%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           HF+ +     S    +Q H Q+      S+  V T+ I++ +       +  +F   + K
Sbjct: 44  HFIDLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELK 103

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           + YL+N+LI G  +N     ++  F  M    +SPD  T   + K +  + +  VG  +H
Sbjct: 104 NSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALH 163

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE----------------------- 181
              +K G   D  +  SL+ MYVK  +    L +FDE                       
Sbjct: 164 CGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRM 223

Query: 182 ------------MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
                       MP+++ GSWN  I+G    GD     R++ +F +M  +NV +WT M+N
Sbjct: 224 GDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMG---RAKELFVKMPEKNVVSWTTMVN 280

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           G+ QNGD ++AL  F  M L++   PN  ++VS L  C+ +  L  G +IH +       
Sbjct: 281 GFSQNGDPEKALETFFCM-LEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFK 339

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            ++ +  AL+DMY+KCG+++ A +VF ++   K  + WS ++ G+ +HG   +A+  +  
Sbjct: 340 LNLVIGTALVDMYAKCGNIEHAEKVFHETK-EKGLLIWSVMIWGWAIHGHFRKALQYFEW 398

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M   G+KPD +  + VL+AC  SG +NEGL+ ++++   Y I+P+ +    VVDMLGRAG
Sbjct: 399 MKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAG 458

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
           +LD AL FI+ MP+ P   +WGAL  A   H N EM +LA K L+QLEP++P +YV LSN
Sbjct: 459 RLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSN 518

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
            YAS  RWD    +R  M+D G  K PG S+I +  K H F   D  H  +V IY  LD+
Sbjct: 519 AYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDE 578

Query: 530 L 530
           +
Sbjct: 579 I 579


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 170/493 (34%), Positives = 287/493 (58%), Gaps = 19/493 (3%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           I N      +I AY       ++  +F  +  K+   + ++INGYV+    +EA +L + 
Sbjct: 261 IRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQ 320

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDL---NVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           M Y NV+      A  + +SG +++    +   + + +SI+     DV+  N++++ Y +
Sbjct: 321 MPYRNVA------AQTAMISGYVQNKRMDDARQIFNQISIR-----DVVCWNTMIAGYSQ 369

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG+  E L+LF +M ++++ SWN  ++ +A  G     ++   +F++MK +N+ +W ++I
Sbjct: 370 CGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIK---IFEEMKEKNIVSWNSLI 426

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288
           +G  QNG   +AL  F+ M  + + +P++ +    L +C+ L  L  GKQ+H   ++   
Sbjct: 427 SGLTQNGSYLDALKSFMLMGHEGQ-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGY 485

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
             D+ + NALI MY+KCGS+  A  +F+D   + D ++W+S+++ Y L+G G EA+ L++
Sbjct: 486 ATDLFVSNALITMYAKCGSISSAELLFKDID-HFDVVSWNSLIAAYALNGNGREALKLFH 544

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
           KM   G  PD +T VG+LSAC   GLI++GL+++  ++  Y I+P  E  AC+VD+LGRA
Sbjct: 545 KMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRA 604

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468
           G+L+ A   ++ M +  +  IWGAL+ A  +HGN E+   A + L++ EP   SNYV LS
Sbjct: 605 GRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLS 664

Query: 469 NLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
           N+ A + RWD VA +R +MK++G +K PG SWI +  + H F   D AHP +V +  +L 
Sbjct: 665 NMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVELCHILR 724

Query: 529 DLILIMRGAAASP 541
            L   MR  A  P
Sbjct: 725 SLTAHMRNTAKCP 737



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 218/467 (46%), Gaps = 51/467 (10%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           +  AR  F  + +R+  S T    L ++   R+ +L K  +   L L +  NP     ++
Sbjct: 93  VEEARQLFDKMPTRDLYSWT----LMITCYTRNGELAKARNLFNL-LPYKWNPVCCNAMV 147

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
             YA   Q  +++ +F+++  KD+  +NS++ GY +N      L+ F  M   +V   + 
Sbjct: 148 AGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNL 207

Query: 123 TLATISKLSGEIKDLNVGM----------LIHGLSIKIGF-----------------VVD 155
            +        E+ DLN              +  +++  GF                 + +
Sbjct: 208 MVDGFV----EVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRN 263

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V+  N++++ YV+     E ++LF EMP++N  SW   I+G+   G       +R++ +Q
Sbjct: 264 VVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLD---EARQLLNQ 320

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  RNV A TAMI+GYVQN  +D+A  +F ++ ++D +  N  ++++    C  +     
Sbjct: 321 MPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWN--TMIAGYSQCGRM----- 373

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
            + +H F  ++ +  D+   N ++  Y++ G +D A ++FE+    K+ ++W+S++SG  
Sbjct: 374 DEALHLF--KQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMK-EKNIVSWNSLISGLT 430

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            +G   +A+  +  M   G KPD  T    LS+C     +  G +++  V+ +       
Sbjct: 431 QNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKS-GYATDL 489

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            +   ++ M  + G +  A    K +      S W +L++A  ++GN
Sbjct: 490 FVSNALITMYAKCGSISSAELLFKDIDHFDVVS-WNSLIAAYALNGN 535



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 188/387 (48%), Gaps = 38/387 (9%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           +S AR  F  +  RN  S  + +  +L       + +L  +  ++ L        +  T 
Sbjct: 62  ISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDL--------YSWTL 113

Query: 61  LITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           +IT Y   G+  +++ +FN + +K +    N+++ GY KN   +EA  LF  M      P
Sbjct: 114 MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAM------P 167

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILANSLMSMYVKCGKFSECLNL 178
               ++  S L+G  ++   G +  GL         DV+  N ++  +V+ G  +     
Sbjct: 168 AKDLVSWNSMLTGYTRN---GEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEF 224

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F+++P  N  SW   + G A    F  +  +RR+FDQM  RNV AW AMI  YVQN  +D
Sbjct: 225 FEKIPNPNTVSWVTMLCGFAR---FGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVD 281

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           EA+ LF+EM      E N +S  +V+     +  L   +Q+    + +    +V+   A+
Sbjct: 282 EAISLFMEMP-----EKNSISWTTVINGYVRMGKLDEARQL----LNQMPYRNVAAQTAM 332

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           I  Y +   +D AR++F   S  +D + W+++++GY   G+  EA+ L+ +MV    K D
Sbjct: 333 ISGYVQNKRMDDARQIFNQISI-RDVVCWNTMIAGYSQCGRMDEALHLFKQMV----KKD 387

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSV 385
           I++   ++++  + G ++  ++I+  +
Sbjct: 388 IVSWNTMVASYAQVGQMDAAIKIFEEM 414



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 155/338 (45%), Gaps = 56/338 (16%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           + +  NS++S + K G+ S+   LFD MPQRN+ SWN  I+ +  +     V  +R++FD
Sbjct: 45  NTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHN---DRVEEARQLFD 101

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  R++Y+WT MI  Y +NG+L +A  LF        + P K +     P C       
Sbjct: 102 KMPTRDLYSWTLMITCYTRNGELAKARNLF-------NLLPYKWN-----PVC------- 142

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
                               CNA++  Y+K    D ARR+F D+   KD ++W+S+++GY
Sbjct: 143 --------------------CNAMVAGYAKNRQFDEARRLF-DAMPAKDLVSWNSMLTGY 181

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G+    +  + +M    ++ D+++   ++      G +N   E +  + N   +   
Sbjct: 182 TRNGEMRLGLQFFEEM----AERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWV 237

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
           T +C        R G++  A      MP+  +   W A+++A V + +    D A    +
Sbjct: 238 TMLCG-----FARFGKIAEARRLFDQMPIR-NVVAWNAMIAAYVQNCHV---DEAISLFM 288

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
           ++  +N  ++ ++ N Y    + D   +L   M  R +
Sbjct: 289 EMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNV 326



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L++ KQ H  ++  G+ ++ FVS  LIT YA CG  + ++L+F  I H DV  +NSLI 
Sbjct: 469 ALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIA 528

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            Y  N    EAL+LF  M    V+PD+ T   I      +  ++ G+ +    ++  + +
Sbjct: 529 AYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQ-AYNI 587

Query: 155 DVILAN--SLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNV-----RISGHASSGDFS 204
           + +  +   ++ +  + G+  E   L   M    N G W       RI G+     F+
Sbjct: 588 EPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFA 645


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 306/572 (53%), Gaps = 75/572 (13%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYAL--CGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ H+Q+L  G   +PF ++K++   +L   G    ++LVF+ I +   Y  NS+I G  
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
             + H EAL  +  M    + PD +T  ++ K     ++ + G  IH  S K+GF  D  
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFK---SCRNSSEGKQIHCHSTKLGFASDTY 121

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQ---------------------------RNVGSW 190
             N+LM+MY  CG       +FD+M                             R + S 
Sbjct: 122 AQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSE 181

Query: 191 NVR---------ISGHASSGDFSLVVR--------------------------------S 209
           NV+         ++  A + D ++V R                                +
Sbjct: 182 NVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLA 241

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           R +FD+ + +N+++W  MING+V++ + +EAL+LF EMQ K  I+ +KV++ S+L  C+ 
Sbjct: 242 RDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKG-IKGDKVTMASLLLACTH 300

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  L  GK +H +  ++ ++ DV+L  AL+DMY+KCGS++ A +VF +    KD +TW++
Sbjct: 301 LGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMP-EKDVMTWTA 359

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++ G  + G+   A+  +++M   G KPD IT VGVL+AC  +G ++EG+  +NS+ +TY
Sbjct: 360 LILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTY 419

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I+PT E    +VD+LGRAG++  A + IK+MP+ P   + G L+ A  +HGN E  + A
Sbjct: 420 GIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERA 479

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            K L++++P +   YV LSN+Y SS++W+     R +M +RG++K PGCS I +HG  H 
Sbjct: 480 AKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHE 539

Query: 510 FSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           F   D +H  S  I EML+D+I  ++ A   P
Sbjct: 540 FVKGDSSHRQSSEINEMLEDMISKLKNAGYVP 571



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 135/322 (41%), Gaps = 44/322 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L   A  R L + K+ H  I   G   +  ++T L+  Y  CG    ++ +F+  
Sbjct: 189 TLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKA 248

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           Q K+++ +N +ING+V++  + EAL LF  M    +  D  T+A++      +  L +G 
Sbjct: 249 QEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGK 308

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H    K    VDV L  +L+ MY KCG     + +F EMP+++V +W           
Sbjct: 309 WLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTW----------- 357

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  TA+I G    G  + AL  F EM +K  ++P+ ++ V
Sbjct: 358 -----------------------TALILGLAMCGQAENALQYFDEMHIKG-VKPDAITFV 393

Query: 262 SVLPTCSSLIGLSGG-----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            VL  CS    +  G          + I+  + H       L+D+  + G +  A  + +
Sbjct: 394 GVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEH----YGGLVDILGRAGRIAEAEELIK 449

Query: 317 DSSFNKDAITWSSIVSGYGLHG 338
                 D      ++    +HG
Sbjct: 450 SMPMAPDQFVLGGLLGACRIHG 471


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 305/563 (54%), Gaps = 44/563 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S  + +  +V A   + K+ KQ H      G   + FV   +   Y  CG+   ++ VF+
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 80  SIQHKDVYL-----------------------------------YNSLINGYVKNHGHNE 104
            +  KDV                                     +N +++G+ ++  H E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           A+ +F  +++    PD  T++++    G+ + LN+G LIHG  IK G + D  + ++++ 
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----N 220
           MY K G     ++LF++      G  N  I+G + +G   LV ++  +F+  K +    N
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG---LVDKALEMFELFKEQTMELN 352

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
           V +WT++I G  QNG   EAL LF EMQ+   ++PN V++ S+LP C ++  L  G+  H
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAG-VKPNHVTIPSMLPACGNIAALGHGRSTH 411

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
           GFA+R  L  +V + +ALIDMY+KCG ++ ++ VF +    K+ + W+S+++G+ +HGK 
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVF-NMMPTKNLVCWNSLMNGFSMHGKA 470

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            E + ++  ++    KPD I+   +LSACG+ GL +EG + +  +   Y IKP  E  +C
Sbjct: 471 KEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSC 530

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +V++LGRAG+L  A D IK MP EP   +WGAL+++  +  N ++ ++A + L  LEPEN
Sbjct: 531 MVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN 590

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
           P  YV LSN+YA+   W  V  +R  M+  GLKK+PGCSWI +  + +     DK+HP  
Sbjct: 591 PGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQI 650

Query: 521 VSIYEMLDDLILIMRGAAASPHL 543
             I E +D++   MR +   P+L
Sbjct: 651 DQITEKMDEISKEMRKSGHRPNL 673



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/499 (24%), Positives = 243/499 (48%), Gaps = 54/499 (10%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
           T Q+H++IL  G  ++ ++S KLI +Y+       + LV  SI    +Y ++SLI    K
Sbjct: 34  TTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTK 93

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
                +++ +FS M+   + PD   L  + K+  E+    VG  IH +S   G  +D  +
Sbjct: 94  AKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFV 153

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK- 217
             S+  MY++CG+  +   +FD M  ++V + +  +  +A  G    VV   R+  +M+ 
Sbjct: 154 QGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVV---RILSEMES 210

Query: 218 ---RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                N+ +W  +++G+ ++G   EA+V+F ++       P++V++ SVLP+      L+
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIH-HLGFCPDQVTVSSVLPSVGDSEMLN 269

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS--------------------------- 307
            G+ IHG+ I++ L  D  + +A+IDMY K G                            
Sbjct: 270 MGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLS 329

Query: 308 ----LDCARRVFE---DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
               +D A  +FE   + +   + ++W+SI++G   +GK  EA+ L+ +M   G KP+ +
Sbjct: 330 RNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHV 389

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           TI  +L ACG    +  G   +   +  + +     + + ++DM  + G+++ +      
Sbjct: 390 TIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLSQIVFNM 448

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI--QLEPENPSNYVSLSNLYASSRRWD 478
           MP + +   W +L++   MHG ++     ++SL+  +L+P    +++S ++L ++  +  
Sbjct: 449 MPTK-NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKP----DFISFTSLLSACGQVG 503

Query: 479 AVAE----LRTMMKDRGLK 493
              E     + M ++ G+K
Sbjct: 504 LTDEGWKYFKMMSEEYGIK 522


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 305/563 (54%), Gaps = 44/563 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S  + +  +V A   + K+ KQ H      G   + FV   +   Y  CG+   ++ VF+
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 80  SIQHKDVYL-----------------------------------YNSLINGYVKNHGHNE 104
            +  KDV                                     +N +++G+ ++  H E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           A+ +F  +++    PD  T++++    G+ + LN+G LIHG  IK G + D  + ++++ 
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----N 220
           MY K G     ++LF++      G  N  I+G + +G   LV ++  +F+  K +    N
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG---LVDKALEMFELFKEQTMELN 352

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
           V +WT++I G  QNG   EAL LF EMQ+   ++PN V++ S+LP C ++  L  G+  H
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAG-VKPNHVTIPSMLPACGNIAALGHGRSTH 411

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
           GFA+R  L  +V + +ALIDMY+KCG ++ ++ VF +    K+ + W+S+++G+ +HGK 
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVF-NMMPTKNLVCWNSLMNGFSMHGKA 470

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            E + ++  ++    KPD I+   +LSACG+ GL +EG + +  +   Y IKP  E  +C
Sbjct: 471 KEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSC 530

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +V++LGRAG+L  A D IK MP EP   +WGAL+++  +  N ++ ++A + L  LEPEN
Sbjct: 531 MVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN 590

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
           P  YV LSN+YA+   W  V  +R  M+  GLKK+PGCSWI +  + +     DK+HP  
Sbjct: 591 PGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQI 650

Query: 521 VSIYEMLDDLILIMRGAAASPHL 543
             I E +D++   MR +   P+L
Sbjct: 651 DQITEKMDEISKEMRKSGHRPNL 673



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/499 (24%), Positives = 243/499 (48%), Gaps = 54/499 (10%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
           T Q+H++IL  G  ++ ++S KLI +Y+       + LV  SI    +Y ++SLI    K
Sbjct: 34  TTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTK 93

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
                +++ +FS M+   + PD   L  + K+  E+    VG  IH +S   G  +D  +
Sbjct: 94  AKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFV 153

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK- 217
             S+  MY++CG+  +   +FD M  ++V + +  +  +A  G    VV   R+  +M+ 
Sbjct: 154 QGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVV---RILSEMES 210

Query: 218 ---RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                N+ +W  +++G+ ++G   EA+V+F ++       P++V++ SVLP+      L+
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIH-HLGFCPDQVTVSSVLPSVGDSEMLN 269

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS--------------------------- 307
            G+ IHG+ I++ L  D  + +A+IDMY K G                            
Sbjct: 270 MGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLS 329

Query: 308 ----LDCARRVFE---DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
               +D A  +FE   + +   + ++W+SI++G   +GK  EA+ L+ +M   G KP+ +
Sbjct: 330 RNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHV 389

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           TI  +L ACG    +  G   +   +  + +     + + ++DM  + G+++ +      
Sbjct: 390 TIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLSQIVFNM 448

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI--QLEPENPSNYVSLSNLYASSRRWD 478
           MP + +   W +L++   MHG ++     ++SL+  +L+P+    ++S ++L ++  +  
Sbjct: 449 MPTK-NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD----FISFTSLLSACGQVG 503

Query: 479 AVAE----LRTMMKDRGLK 493
              E     + M ++ G+K
Sbjct: 504 LTDEGWKYFKMMSEEYGIK 522


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 181/515 (35%), Positives = 295/515 (57%), Gaps = 23/515 (4%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT--QSQLVFNSIQHKDVYLYNS 91
           ++++  KQ H+Q++    I +P  + +L+   A+        ++ +F S+   + + YN+
Sbjct: 22  KTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNT 81

Query: 92  LINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           LI    +++   +AL +F  M    +V P+ FT  ++ K  G  + L  G  +HGL++K 
Sbjct: 82  LIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKF 141

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLF------------DEMPQRNVGS---WNVRIS 195
           G   D  + ++++ MY+ CG   +   LF             +  +R  G    WNV I 
Sbjct: 142 GLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMID 201

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
           G+   G+  +   +R +FD+M +R+V +W  MI GY Q+G   EA+ +F EMQ+ + + P
Sbjct: 202 GYVRIGELEV---ARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAE-VPP 257

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N V+LVSVLP  S L  L  GK +H +A+R  +  D  L +ALIDMY+KCGS++ A +VF
Sbjct: 258 NYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVF 317

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
           E     ++ +TWS+I++G  +HG+  + +  +  M   G  P  +T +G+LSAC  +GL+
Sbjct: 318 EGLP-KRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLV 376

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           NEG   ++ ++    ++P  E   C+VD+LGRAG L+ + + I  MP++P   IW AL+ 
Sbjct: 377 NEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLG 436

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
           A  MHGN EM     + L++L P +  +YV+LSN+YAS   W+ VA++R MMK+  ++K 
Sbjct: 437 ACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKD 496

Query: 496 PGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           PGCSWI + G  H F V D +HP S  I+ ML ++
Sbjct: 497 PGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEM 531


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 187/512 (36%), Positives = 290/512 (56%), Gaps = 12/512 (2%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+     R ++  ++    I+  G   + +V   LI  Y        ++ +F+ +
Sbjct: 199 TYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEM 258

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVG 140
             +D   +N +I+GYV+     +A+  F  M    N  PD+ T+ +       +K+L +G
Sbjct: 259 TTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELG 318

Query: 141 MLIHGLSIK-IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
             IH    K +GF   +   N+L+ MY KCG  +   N+FDEM  +NV  W   ISG+ +
Sbjct: 319 DEIHNYVRKELGFTTRI--DNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYIN 376

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
            GD      +R +FD+   R+V  WTAMINGYVQ    D+A+ LF EMQ++ +I+P+K +
Sbjct: 377 CGDLR---EARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQ-KIKPDKFT 432

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +V++L  C+ L  L  GK IHG+     +  DV +  ALI+MYSKCG +D +  +F +  
Sbjct: 433 VVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELE 492

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            +KD  +W+SI+ G  ++GK  EA+ L+++M  +G+KPD IT +GVLSAC   GL+ EG 
Sbjct: 493 -DKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGR 551

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP---SIWGALVSA 436
             +NS+   +RI+P  E   CV+D+LGRAG LD A + I+ +P+E       ++GAL+SA
Sbjct: 552 RFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSA 611

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N +M +   K L  +E  + S +  L+N+YAS  RW+   ++R  MK+ G+KK P
Sbjct: 612 CRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMP 671

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
           GCS I + G  H F V D +HP  + I  ML+
Sbjct: 672 GCSLIEVDGIVHEFLVGDPSHPEMIEICSMLN 703



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 204/443 (46%), Gaps = 71/443 (16%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLIT--AYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           +S+   KQ  SQI  +G   +     KL+   A +  G    ++ +FN +Q   +++YN 
Sbjct: 108 KSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNV 167

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           ++  Y K     + L LF  +    + PD FT   + K  G ++D+  G  + G  +K G
Sbjct: 168 MVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTG 227

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
             +D  + NSL+ MY +         LFDEM  R+  SWNV ISG+         VR RR
Sbjct: 228 MDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGY---------VRCRR 278

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                                     ++A+  F EMQ +   +P++ ++VS L  C++L 
Sbjct: 279 -------------------------FEDAINTFREMQQEGNEKPDEATVVSTLSACTALK 313

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  G +IH + +RKEL     + NAL+DMY+KCG L+ AR +F++ S  K+ I W+S++
Sbjct: 314 NLELGDEIHNY-VRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSM-KNVICWTSMI 371

Query: 332 SGYGLHGKGHE-------------------------------AVLLYNKMVCLGSKPDII 360
           SGY   G   E                               AV L+ +M     KPD  
Sbjct: 372 SGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKF 431

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+V +L+ C + G + +G  I+   ++  RI     +   +++M  + G +D++L+    
Sbjct: 432 TVVTLLTGCAQLGALEQGKWIH-GYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYE 490

Query: 421 MPVEPSPSIWGALVSASVMHGNS 443
           +  + + S W +++    M+G +
Sbjct: 491 LEDKDTAS-WTSIICGLAMNGKT 512



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 151/281 (53%), Gaps = 12/281 (4%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           + ++F+ ++  +++ +  M+  Y + G L + L+LF +++ +D + P+  +   VL    
Sbjct: 150 AEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLR-EDGLWPDGFTYPFVLKAIG 208

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            L  +  G+++ GF ++  ++ D  + N+LIDMY +  +++ A+++F++ +  +D+++W+
Sbjct: 209 CLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMT-TRDSVSWN 267

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
            ++SGY    +  +A+  + +M   G+ KPD  T+V  LSAC     +  G EI+N V  
Sbjct: 268 VMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYV-- 325

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQ 446
              +  TT I   ++DM  + G L+ A +    M ++ +   W +++S  +  G+  E +
Sbjct: 326 RKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMK-NVICWTSMISGYINCGDLREAR 384

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRW-DAVAELRTM 486
           DL  KS ++    +   + ++ N Y     + DAVA  R M
Sbjct: 385 DLFDKSPVR----DVVLWTAMINGYVQFHHFDDAVALFREM 421


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 185/522 (35%), Positives = 280/522 (53%), Gaps = 37/522 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L    +  + +  K+ H   + +G +S+  V +  +  Y  CG    +QL+F+
Sbjct: 335 STTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFD 394

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  ++V  +N++I G  +     EAL LF  M      PD  T   I   +   + L  
Sbjct: 395 KLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEW 454

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              +H  +I  G +VD+ + N+L+ MY KCG                             
Sbjct: 455 VKEVHSYAIDAG-LVDLRVGNALVHMYAKCGN---------------------------- 485

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                  + +++VFD M  RNV  WT MI+G  Q+G   EA  LFL+M L++ I P+  +
Sbjct: 486 ------TMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQM-LREGIVPDATT 538

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            VS+L  C+S   L   K++H  A+   L  D+ + NAL+ MY+KCGS+D ARRVF+D  
Sbjct: 539 YVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM- 597

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D  +W+ ++ G   HG+G +A+ L+ KM   G KP+  + V VLSAC  +GL++EG 
Sbjct: 598 LERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGR 657

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             + S+   Y I+PT E   C+VD+LGRAGQL+ A  FI  MP+EP  + WGAL+ A V 
Sbjct: 658 RQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVT 717

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           +GN EM + A K  ++L+P++ S YV LSN+YA++  W+    +R+MM+ RG++K PG S
Sbjct: 718 YGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRS 777

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           WI +  + H F V D +HP S  IY  L DLI  ++     P
Sbjct: 778 WIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVP 819



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 204/441 (46%), Gaps = 42/441 (9%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  K+ H      G IS+  V   LI  YA CG    ++LVF+ +  +DV  +N++I 
Sbjct: 249 ALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIG 308

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G  +N   +EA  +F  M      PD  T  ++               +H  ++++G V 
Sbjct: 309 GLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVS 368

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+ + ++ + MY++CG   +                                  ++ +FD
Sbjct: 369 DLRVGSAFVHMYIRCGSIDD----------------------------------AQLIFD 394

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           ++  RNV  W AMI G  Q     EAL LFL+M+ ++   P+  + V++L        L 
Sbjct: 395 KLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMR-REGFFPDATTFVNILSANVGEEALE 453

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
             K++H +AI   L  D+ + NAL+ MY+KCG+   A++VF+D    ++  TW+ ++SG 
Sbjct: 454 WVKEVHSYAIDAGLV-DLRVGNALVHMYAKCGNTMYAKQVFDD-MVERNVTTWTVMISGL 511

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG GHEA  L+ +M+  G  PD  T V +LSAC  +G +    E+++  +N   +   
Sbjct: 512 AQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSD- 570

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSL 453
             +   +V M  + G +D A      M +E     W  ++     HG   +  DL  K  
Sbjct: 571 LRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQHGRGLDALDLFVK-- 627

Query: 454 IQLEPENPSNYVSLSNLYASS 474
           ++LE   P+ Y  ++ L A S
Sbjct: 628 MKLEGFKPNGYSFVAVLSACS 648



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 181/404 (44%), Gaps = 40/404 (9%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SLK  K+ H+ I+  G  S+  V T L+  Y  CG    +QL+F+ +  ++V  +  +I 
Sbjct: 45  SLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIG 104

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G        EA   F  M      P+ +T  +I   +     L     +H  ++  G  +
Sbjct: 105 GLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL 164

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+ + N+L+ MY K G   +                                  +R VFD
Sbjct: 165 DLRVGNALVHMYAKSGSIDD----------------------------------ARVVFD 190

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL--PTCSSLIG 272
            M  R++++WT MI G  Q+G   EA  LFL+M+ +    PN  + +S+L     +S   
Sbjct: 191 GMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQME-RGGCLPNLTTYLSILNASAITSTGA 249

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L   K++H  A +     D+ + NALI MY+KCGS+D AR VF D   ++D I+W++++ 
Sbjct: 250 LEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVF-DGMCDRDVISWNAMIG 308

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           G   +G GHEA  ++ KM   G  PD  T + +L+    +G      E++   +    + 
Sbjct: 309 GLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVS 368

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
               + +  V M  R G +D A      + V  + + W A++  
Sbjct: 369 D-LRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGG 410



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 194/445 (43%), Gaps = 79/445 (17%)

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I GY +     +A++++S M      P++ T  +I K       L  G  IH   I+ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F  DV +  +L++MYVKCG   +                                  ++ 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDD----------------------------------AQL 86

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +FD+M  RNV +WT MI G    G   EA   FL+MQ +  I PN  + VS+L   +S  
Sbjct: 87  IFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI-PNSYTYVSILNANASAG 145

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L   K++H  A+   L  D+ + NAL+ MY+K GS+D AR VF D    +D  +W+ ++
Sbjct: 146 ALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVF-DGMVERDIFSWTVMI 204

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA------------------CGRSG 373
            G   HG+G EA  L+ +M   G  P++ T + +L+A                   G++G
Sbjct: 205 GGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAG 264

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            I++ L + N++I+ Y    + +    V D     G  DR  D I           W A+
Sbjct: 265 FISD-LRVGNALIHMYAKCGSIDDARLVFD-----GMCDR--DVIS----------WNAM 306

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPE----NPSNYVSLSNLYASSRRWDAVAELRTMMKD 489
           +     +G       A+   ++++ E    + + Y+SL N + S+  W+ V E+     +
Sbjct: 307 IGGLAQNGCGHE---AFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVE 363

Query: 490 RGLKKSPGCSWISIHGKTHCFSVAD 514
            GL          +H    C S+ D
Sbjct: 364 VGLVSDLRVGSAFVHMYIRCGSIDD 388


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 187/512 (36%), Positives = 290/512 (56%), Gaps = 12/512 (2%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+     R ++  ++    I+  G   + +V   LI  Y        ++ +F+ +
Sbjct: 245 TYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEM 304

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVG 140
             +D   +N +I+GYV+     +A+  F  M    N  PD+ T+ +       +K+L +G
Sbjct: 305 TTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELG 364

Query: 141 MLIHGLSIK-IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
             IH    K +GF   +   N+L+ MY KCG  +   N+FDEM  +NV  W   ISG+ +
Sbjct: 365 DEIHNYVRKELGFTTRI--DNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYIN 422

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
            GD      +R +FD+   R+V  WTAMINGYVQ    D+A+ LF EMQ++ R++P+K +
Sbjct: 423 CGDLR---EARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQ-RVKPDKFT 478

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +V++L  C+ L  L  GK IHG+     +  DV +  ALI+MYSKCG +D +  +F +  
Sbjct: 479 VVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELE 538

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            +KD  +W+SI+ G  ++GK  EA+ L+++M  +G+KPD IT +GVLSAC   GL+ EG 
Sbjct: 539 -DKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGR 597

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP---SIWGALVSA 436
             +NS+   +RI+P  E   CV+D+LGRAG LD A + I+ +P+E       ++GAL+SA
Sbjct: 598 RFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSA 657

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N +M +   K L  +E  + S +  L+N+YAS  RW+   ++R  MK+ G+KK P
Sbjct: 658 CRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMP 717

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
           GCS I + G  H F V D +HP  + I  ML+
Sbjct: 718 GCSLIEVDGIVHEFLVGDPSHPEMMEICSMLN 749



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 204/443 (46%), Gaps = 71/443 (16%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLIT--AYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           +S+   KQ  SQI  +G   +     KL+   A +  G    ++ +FN +Q   +++YN 
Sbjct: 154 KSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNV 213

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           ++  Y K     + L LF  +    + PD FT   + K  G ++D+  G  + G  +K G
Sbjct: 214 MVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTG 273

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
             +D  + NSL+ MY +         LFDEM  R+  SWNV ISG+         VR RR
Sbjct: 274 MDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGY---------VRCRR 324

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                                     ++A+  F EMQ +   +P++ ++VS L  C++L 
Sbjct: 325 -------------------------FEDAINTFREMQQEGNEKPDEATVVSTLSACTALK 359

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  G +IH + +RKEL     + NAL+DMY+KCG L+ AR +F++ S  K+ I W+S++
Sbjct: 360 NLELGDEIHNY-VRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSM-KNVICWTSMI 417

Query: 332 SGYGLHGKGHE-------------------------------AVLLYNKMVCLGSKPDII 360
           SGY   G   E                               AV L+ +M     KPD  
Sbjct: 418 SGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKF 477

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+V +L+ C + G + +G  I+   ++  RI     +   +++M  + G +D++L+    
Sbjct: 478 TVVTLLTGCAQLGALEQGKWIH-GYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYE 536

Query: 421 MPVEPSPSIWGALVSASVMHGNS 443
           +  + + S W +++    M+G +
Sbjct: 537 LEDKDTAS-WTSIICGLAMNGKT 558



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 152/285 (53%), Gaps = 12/285 (4%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           + ++F+ ++  +++ +  M+  Y + G L + L+LF +++ +D + P+  +   VL    
Sbjct: 196 AEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLR-EDGLWPDGFTYPFVLKAIG 254

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            L  +  G+++ GF ++  ++ D  + N+LIDMY +  +++ A+++F++ +  +D+++W+
Sbjct: 255 CLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMT-TRDSVSWN 313

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
            ++SGY    +  +A+  + +M   G+ KPD  T+V  LSAC     +  G EI+N V  
Sbjct: 314 VMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYV-- 371

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQ 446
              +  TT I   ++DM  + G L+ A +    M ++ +   W +++S  +  G+  E +
Sbjct: 372 RKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMK-NVICWTSMISGYINCGDLREAR 430

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRW-DAVAELRTMMKDR 490
           DL  KS ++    +   + ++ N Y     + DAVA  R M   R
Sbjct: 431 DLFDKSPVR----DVVLWTAMINGYVQFHHFDDAVALFREMQIQR 471


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/508 (35%), Positives = 280/508 (55%), Gaps = 36/508 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L + +   +  +  G +++ FV + LI  YA C     +QL+F++++   V ++N++I 
Sbjct: 134 TLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIIT 193

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            Y+KN    E +E+F  M    V+ D+ TL ++    G I D  +G  +     + G V 
Sbjct: 194 AYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVR 253

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +  L  +L+ MY KCG+                                    ++RR+FD
Sbjct: 254 NRNLMTALIDMYAKCGELG----------------------------------KARRLFD 279

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            M+ R+V AW+AMI+GY Q     EAL LF EMQL + +EPN V++VSVL  C+ L  L 
Sbjct: 280 GMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAE-VEPNDVTMVSVLSACAVLGALE 338

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK +H +  RK L+  + L  AL+D Y+KCG +D A   FE     K++ TW++++ G 
Sbjct: 339 TGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPV-KNSWTWTALIKGM 397

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G+G EA+ L++ M     +P  +T +GVL AC  S L+ EG   ++S+   Y IKP 
Sbjct: 398 ATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPR 457

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   CVVD+LGRAG +D A  FI+TMP+EP+  IW AL+S+  +H N E+ + A K ++
Sbjct: 458 AEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIV 517

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
            L P +  +Y+ LSN+YAS  +W   A +R  MKDRG++K+PGCS I + G    F   D
Sbjct: 518 SLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAED 577

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASPH 542
             HP    IY+ ++++I  ++ A   P+
Sbjct: 578 SDHPQLKEIYQKVEEMIDRIKMAGYIPN 605



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 47/103 (45%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A   +L+  K  HS I          + T L+  YA CG    +   F S+
Sbjct: 323 TMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESM 382

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
             K+ + + +LI G   N    EALELFS+M  +++ P D T 
Sbjct: 383 PVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTF 425


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 188/525 (35%), Positives = 283/525 (53%), Gaps = 40/525 (7%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNM 112
           + FV++ L+ AY   G    ++ V + + H+ V  +++LI  +  +HG  E A  L   M
Sbjct: 54  DAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHA-SHGDAEGAWGLLERM 112

Query: 113 YYSNVSPD------------------DFTLATIS-----------------KLSGEIKDL 137
               V P+                  D  LA +                     G++ D+
Sbjct: 113 RSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDV 172

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            VG  +HG  +K G  +D  +A +L+ MY KCG+  E + +FDE    +V S N  ++G 
Sbjct: 173 AVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGL 232

Query: 198 ASSGDFSLVVRSRRVF-DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           + +   S  +R  R F  +    NV +WT+++   VQNG   EA+ LF EMQ  + IEPN
Sbjct: 233 SRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQ-SEGIEPN 291

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            V++  VLP  +++  L  G+  H F++RK  +HD+ + +AL+DMY+KCG +  AR +FE
Sbjct: 292 SVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFE 351

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
              + ++ ++W++++ GY +HG+   AV L+  M     KPD++T   VL AC ++G   
Sbjct: 352 AMPY-RNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTE 410

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EG   +N + + + I P  E  AC+V +LGRAG+LD A D I  MP EP   IWG+L+ +
Sbjct: 411 EGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGS 470

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +HGN  + ++A ++L QLEPEN  NYV LSN+YAS + WD V  LR MMK  GLKK  
Sbjct: 471 CRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEK 530

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           GCSWI I  K H     D +HP   +I E L  L + MR    +P
Sbjct: 531 GCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAP 575



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 163/350 (46%), Gaps = 47/350 (13%)

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD----FSLV 206
           G   D  +A+SL+  Y++ G  ++  ++ D MP R V  W+  I+ HAS GD    + L+
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
            R R   D ++  NV  W  +++G  ++G   +A++  + M  +  + P+   +   L  
Sbjct: 110 ERMRS--DGVE-PNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFL-PDATGVSCALSA 165

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
              +  ++ G+Q+HG+ ++     D  +  ALIDMY KCG  D   RVF++SS + D  +
Sbjct: 166 VGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESS-HMDVAS 224

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
            +++V+G   + +  EA+ L+ + V  G + ++++   +++ C ++G   E ++++   +
Sbjct: 225 CNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFRE-M 283

Query: 387 NTYRIKPTTEICACV-----------------------------------VDMLGRAGQL 411
            +  I+P +    CV                                   VDM  + G++
Sbjct: 284 QSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRV 343

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
             A    + MP     S W A++    MHG +E     ++S+ Q   E P
Sbjct: 344 RDARMIFEAMPYRNVVS-WNAMIGGYAMHGEAENAVRLFRSM-QSSKEKP 391



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 132/339 (38%), Gaps = 71/339 (20%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           + + +Q H  ++  G   +  V+T LI  Y  CG+  +   VF+   H DV   N+L+ G
Sbjct: 172 VAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAG 231

Query: 96  YVKN----------------------------------HGHN-EALELFSNMYYSNVSPD 120
             +N                                  +G + EA++LF  M    + P+
Sbjct: 232 LSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPN 291

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
             T+  +      I  L  G   H  S++ GF  D+ + ++L+ MY KCG+  +   +F+
Sbjct: 292 SVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFE 351

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR-NVYAWTAMINGYVQNGDLDE 239
            MP RNV SWN  I G+A  G+    VR  R     K + ++  +T ++    Q G  +E
Sbjct: 352 AMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEE 411

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
               F EMQ K  I P                      ++  +A              ++
Sbjct: 412 GRSYFNEMQHKHGISP----------------------RMEHYA-------------CMV 436

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
            +  + G LD A  +     F  D   W S++    +HG
Sbjct: 437 TLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHG 475



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 13/171 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   + +H   L  G   + +V + L+  YA CG+   ++++F 
Sbjct: 292 SVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFE 351

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI---SKLSGEIKD 136
           ++ +++V  +N++I GY  +     A+ LF +M  S   PD  T   +      +G  ++
Sbjct: 352 AMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEE 411

Query: 137 ----LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
                N     HG+S ++           ++++  + GK  +  ++ ++MP
Sbjct: 412 GRSYFNEMQHKHGISPRMEHYA------CMVTLLGRAGKLDDAYDIINQMP 456


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 185/547 (33%), Positives = 305/547 (55%), Gaps = 48/547 (8%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNP----FVSTKLITAYALCGQ-----PTQSQL 76
           FL    T +S+K  KQ H+ I+    + +P     +ST+L    ALC Q     P  +  
Sbjct: 40  FLSTLQTCKSIKGLKQIHASIIKT--MPSPDAQLTISTRL---SALCAQSLPIDPRYALS 94

Query: 77  VFNSIQHKDVYLYNSLINGY-VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
           +   ++  ++ LYN++I G    N+   E L ++  M    + PD++T+  + K   E +
Sbjct: 95  LLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESR 154

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
            +  G  +HG +IK+G   DV ++N+LM MY  C        +FD  PQR++ SW   I 
Sbjct: 155 AVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQ 214

Query: 196 GH-----ASSGDFSLVVR--------------------------SRRVFDQMKRRNVYAW 224
           G+     A  G    ++R                          +R+VF +M  +NV +W
Sbjct: 215 GYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSW 274

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            +MI+G  Q G   E+L +F +MQ +  ++P+ V+LV+VL +C++L  L  GK +H +  
Sbjct: 275 NSMISGLAQKGQFKESLYMFRKMQ-RLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLD 333

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R ++  D  + NAL+DMY+KCGS+D A  VF+  +  KD  ++++++ G  +HG+G +A+
Sbjct: 334 RNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMN-RKDVYSYTAMIVGLAMHGQGGKAL 392

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+++M  +G +PD +T VGVL+AC   GL+ EG + +  +   Y ++P  E   C+VD+
Sbjct: 393 DLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDL 452

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           LGRAG ++ A +FI+ MP+EP   + GAL+ A  +HG  E+ +   K + ++EP     Y
Sbjct: 453 LGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAY 512

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           V +SN+Y+S+ RW    +LR  MK+R L+K+PGCS I + G  H F   DK+HP    IY
Sbjct: 513 VLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIY 572

Query: 525 EMLDDLI 531
           ++LD+++
Sbjct: 573 KLLDEIM 579


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 185/500 (37%), Positives = 278/500 (55%), Gaps = 37/500 (7%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H QI+  G  S+ FV   L+  YA CG    +++VF+ + H+ +  + S+I+GY +N   
Sbjct: 177 HGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKA 236

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EAL +FS M  + V PD   L +I +   ++ DL  G  IHG  IK+G   +  L  SL
Sbjct: 237 VEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISL 296

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
            + Y KCG                                  LV  ++  FDQMK  NV 
Sbjct: 297 TAFYAKCG----------------------------------LVTVAKSFFDQMKTTNVI 322

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W AMI+GY +NG  +EA+ LF  M +   I+P+ V++ S +   + +  L   + +  +
Sbjct: 323 MWNAMISGYAKNGHAEEAVNLFHYM-ISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDY 381

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
             +     D+ +  +LIDMY+KCGS++ ARRVF+ +S +KD + WS+++ GYGLHG+G E
Sbjct: 382 VSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNS-DKDVVMWSAMIMGYGLHGQGWE 440

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ LY+ M   G  P+ +T +G+L+AC  SGL+ EG E+++  +  + I P  E  +CVV
Sbjct: 441 AINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFH-CMKDFEIVPRNEHYSCVV 499

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGRAG L  A  FI  +P+EP  S+WGAL+SA  ++    + + A   L  L+P N  
Sbjct: 500 DLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTG 559

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
           +YV LSNLYASS  WD VA +R +M+++GL K  G S I I+GK   F V DK+HP +  
Sbjct: 560 HYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKE 619

Query: 523 IYEMLDDLILIMRGAAASPH 542
           I++ L  L   ++     P+
Sbjct: 620 IFDELQRLERRLKEVGFVPY 639



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 200/413 (48%), Gaps = 40/413 (9%)

Query: 30  SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
           ++TH+  +   Q H++++  G   N F+ TKL+   +  GQ   ++ +F+   + DV+++
Sbjct: 65  NSTHK--RHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMW 122

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N++I  Y +N+ + + +E++  M ++ V PD FT   + K   E+ D  +  +IHG  IK
Sbjct: 123 NAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIK 182

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            GF  DV + N L+++Y KCG       +FD +  R + SW   ISG+A +G     V +
Sbjct: 183 YGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGK---AVEA 239

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
            R+F QM+                NG                 ++P+ ++LVS+L   + 
Sbjct: 240 LRMFSQMR---------------NNG-----------------VKPDWIALVSILRAYTD 267

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           +  L  G+ IHGF I+  L  + +L  +L   Y+KCG +  A+  F D     + I W++
Sbjct: 268 VDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFF-DQMKTTNVIMWNA 326

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++SGY  +G   EAV L++ M+    KPD +T+   + A  + G + E  +  +  ++  
Sbjct: 327 MISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSL-ELAQWMDDYVSKS 385

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
                  +   ++DM  + G ++ A         +    +W A++    +HG 
Sbjct: 386 NYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNS-DKDVVMWSAMIMGYGLHGQ 437



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 122/245 (49%), Gaps = 4/245 (1%)

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
           S +   +  +R++FD+    +V+ W A+I  Y +N    + + ++  M+    + P+  +
Sbjct: 98  SSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTG-VHPDGFT 156

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
              VL  C+ L+       IHG  I+     DV + N L+ +Y+KCG +  A+ VF D  
Sbjct: 157 FPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVF-DGL 215

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
           +++  ++W+SI+SGY  +GK  EA+ ++++M   G KPD I +V +L A      + +G 
Sbjct: 216 YHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGR 275

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            I+  VI    ++    +   +     + G +  A  F   M    +  +W A++S    
Sbjct: 276 SIHGFVIKM-GLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKT-TNVIMWNAMISGYAK 333

Query: 440 HGNSE 444
           +G++E
Sbjct: 334 NGHAE 338



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 4   SSARNTFALVTSRNYT--SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
             A N F  + SRN    S TV+  +  SA   SL+L +     +    + S+ FV+T L
Sbjct: 338 EEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSL 397

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           I  YA CG    ++ VF+    KDV +++++I GY  +    EA+ L+  M  + V P+D
Sbjct: 398 IDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPND 457

Query: 122 FT---LATISKLSGEIKD 136
            T   L T    SG +K+
Sbjct: 458 VTFIGLLTACNHSGLVKE 475


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 176/505 (34%), Positives = 280/505 (55%), Gaps = 38/505 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +  H  ++  G   +  VS  LIT YA CG+   ++ VF+ I  KD+  +NS+I+GY K 
Sbjct: 147 RMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKM 206

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               EA+ LF  M  +   P++ +L ++    GE+ DL +G  +    ++    ++  + 
Sbjct: 207 RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMG 266

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           ++L+ MY KCG                                   +V +RR+FD MK++
Sbjct: 267 SALIHMYGKCGD----------------------------------LVSARRIFDSMKKK 292

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           +   W AMI GY QNG  +EA+ LF +M++     P++++L+ +L  C+S+  L  GKQ+
Sbjct: 293 DKVTWNAMITGYAQNGMSEEAIKLFQDMRMSS-TAPDQITLIGILSACASIGALDLGKQV 351

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
             +A  +    DV +  AL+DMY+KCGSLD A RVF     NK+ ++W++++S    HG+
Sbjct: 352 EIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMP-NKNEVSWNAMISALAFHGQ 410

Query: 340 GHEAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
             EA+ L+  M+  G    P+ IT VGVLSAC  +GL++EG  +++ + +++ + P  E 
Sbjct: 411 AQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEH 470

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            +C+VD+  RAG L+ A DF+ TMP +P   I GAL+ A     N ++ +   K L++LE
Sbjct: 471 YSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELE 530

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P N  NYV  S LYA+ RRWD  A +R +MK +G+ K+PGCSWI I+ + H F   D  H
Sbjct: 531 PSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLH 590

Query: 518 PCSVSIYEMLDDLILIMRGAAASPH 542
              + I+++LD LI  +R     P+
Sbjct: 591 QEWIEIHQILDLLIDDLRREGYIPN 615



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 3/167 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A+  +L L KQ        G   + +V T L+  YA CG    +  VF  +
Sbjct: 331 TLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGM 390

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS--NVSPDDFTLATISKLSGEIKDLNV 139
            +K+   +N++I+    +    EAL LF +M      VSP+D T   +         ++ 
Sbjct: 391 PNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDE 450

Query: 140 G-MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           G  L H +S   G V  +   + ++ ++ + G   E  +    MP++
Sbjct: 451 GRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEK 497


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 192/556 (34%), Positives = 291/556 (52%), Gaps = 46/556 (8%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L   A  + L L KQ H  I     ISNP V   L+  Y  CG    +  +F 
Sbjct: 297 AQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFL 356

Query: 80  SIQHKDVYL-----------------------------------YNSLINGYVKNHGHNE 104
               K+V                                     +NS+I+GYV+N   +E
Sbjct: 357 KFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDE 416

Query: 105 ALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163
           A  +F NM     + PD FTL ++     +   L  G  IH  +I  G   D  +  +L+
Sbjct: 417 AFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALV 476

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK----RR 219
            MY KC   +     FDE+ +++V +WN  ISG+  S     + R + + ++MK      
Sbjct: 477 EMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQ---IERIQYLLEKMKGDGYHP 533

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N+Y W +++ G V+N  LD  + LF EMQ+  ++ P+  ++  +LP CS L  L  GKQ 
Sbjct: 534 NIYTWNSILAGLVENRQLDLTMQLFSEMQIS-KLRPDIYTVGIILPACSRLATLERGKQA 592

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H  +I+   + DV +  AL+DMY+KCGSL  A+  ++  S N + ++ +++++   +HG 
Sbjct: 593 HAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRIS-NPNLVSHNAMLTACAMHGH 651

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           G E + L+  M+ LG  PD +T + VLS+C   G +  G E ++ ++  Y +KPT +   
Sbjct: 652 GEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFD-LMGYYNVKPTLKHYT 710

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            +VD+L R+GQL  A + IK MPVE    +WGAL+   V HGN E+ ++A + LI+LEP 
Sbjct: 711 SMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELGEIAAERLIELEPN 770

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           N  NYV L+NL+A +RRW  +A +R MMKDRG+ KSPGCSWI    + H F   D++H  
Sbjct: 771 NSGNYVLLANLHAYARRWTDLARVRGMMKDRGMHKSPGCSWIEDKNEIHSFLACDRSHKR 830

Query: 520 SVSIYEMLDDLILIMR 535
           +  IY  LD L L M+
Sbjct: 831 AEEIYATLDYLALHMK 846



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 230/471 (48%), Gaps = 51/471 (10%)

Query: 7   RNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYA 66
           R+ F+L+ ++   ++    +  V  + +  KL KQ H+  +  G  ++ F+ TKL+  YA
Sbjct: 49  RSNFSLLDNKPLNTSK---YASVLDSCKCPKLGKQVHAHTIKTGFDADGFIDTKLLQMYA 105

Query: 67  LCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
            CG    +  +F ++  ++++ + ++++ Y+ +    EA  LF  + +  V  D F    
Sbjct: 106 RCGLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPL 165

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           + K    +  + +G  +HGL IK  F +++ ++N+L+ MY KCG   +   +  +MP+R+
Sbjct: 166 VFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERD 225

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-----RNVYAWTAMINGYVQNGDLDEAL 241
             +WN  I+  A++G   +V  +    ++MK       NV +W+A+I G+ QNG  +EA+
Sbjct: 226 SVTWNSVITACAANG---MVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAI 282

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            +   MQ++  + PN  +L  VLP C+ L  L  GKQ+HG+  R +   +  + NAL+D+
Sbjct: 283 EMLFRMQVEGLV-PNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDV 341

Query: 302 YSKCGSLDCARRVFEDSS----------------------------------FNKDAITW 327
           Y +CG +  A ++F   S                                    +  I+W
Sbjct: 342 YRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISW 401

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           +SI+SGY  +    EA  ++  M+   G +PD  T+  VL+AC  +  + +G EI+   I
Sbjct: 402 NSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAI 461

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRA-LDFIKTMPVEPSPSIWGALVSA 436
               ++  T +   +V+M  +   L  A + F + M  E     W AL+S 
Sbjct: 462 -VKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVM--EKDVPTWNALISG 509


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 186/532 (34%), Positives = 292/532 (54%), Gaps = 16/532 (3%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           S    +A   H LQ  +    L+   Q H Q+L  G I +   ++KL+   A C  P   
Sbjct: 13  SSESNAAQTLHLLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLL---AFCASPNSG 66

Query: 75  QL-----VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK 129
            L     VF+ I   + +++N++I GY  +    EAL L+ +M Y +V  + +T   + K
Sbjct: 67  SLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLK 126

Query: 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189
               +        IH   IK+GF  ++   NSL+++Y K G       LFD++ QR+  S
Sbjct: 127 ACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVS 186

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
           WN  I G+   G+  +   +  +F+ M  RN+ +WT+MI+G V  G   EAL LF  MQ 
Sbjct: 187 WNSMIDGYTKCGEIEM---AYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQT 243

Query: 250 KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
              I+ + V+LVS L  C+ L  L  GK IH +  + E+  D  L   LIDMY+KCG L+
Sbjct: 244 AG-IKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLE 302

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            A  VF      K    W++++SGY +HG+G EA+  + KM   G +P+ +T  G+L+AC
Sbjct: 303 EAIEVFRKME-EKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
             +GL++E   ++ S+   +  KP+ E   C+VD+LGRAG L  A + I+ MPV+P+ +I
Sbjct: 362 SHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAI 421

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489
           WGAL++A  +HGN E+     K LIQ++P +   Y+ L++++A++  W+  A +R  MK+
Sbjct: 422 WGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKE 481

Query: 490 RGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           +G+ K PGCS IS++G  H F   D++HP    I  ML+ ++  +R     P
Sbjct: 482 QGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKP 533


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 187/557 (33%), Positives = 303/557 (54%), Gaps = 50/557 (8%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           + +T     +  A   +L+L  Q H   L     ++  + T  +  Y  C   + +Q +F
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           NS+ + ++  YN++I GY ++   ++ L L           D+ +L+   +    IK   
Sbjct: 334 NSLPNHNLQSYNAIIVGYARS---DKGLGL-----------DEVSLSGAFRACAVIKGDL 379

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G+ +HGLS+K     ++ +AN+++ MY KCG   E   +F+EM  R+  SWN  I+ H 
Sbjct: 380 EGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHE 439

Query: 199 SSGD----FSLVVRSR------------------------------RVFDQMKRRNVYAW 224
            +G+     SL + +R                              ++ D++  + V +W
Sbjct: 440 QNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSW 499

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            A+I+G+      +EA   F +M L+  ++P+  +  ++L TC++L+ +  GKQIH   I
Sbjct: 500 NAIISGFSLQKQSEEAQKTFSKM-LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQII 558

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           +KEL  D  + + L+DMYSKCG++   + +FE +  N+D +TW+++V GY  HG G EA+
Sbjct: 559 KKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP-NRDFVTWNAMVCGYAQHGLGEEAL 617

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            ++  M     KP+  T + VL ACG  GL+ +GL  ++S+++ Y + P  E  +CVVD+
Sbjct: 618 KIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDI 677

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           +GR+GQ+ +AL+ I+ MP E    IW  L+S   +HGN E+ + A  S++QLEPE+ + Y
Sbjct: 678 MGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAY 737

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           V LSN+YA++  W+ V +LR MM+  GLKK PGCSWI I  + H F V DKAHP S  IY
Sbjct: 738 VLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIY 797

Query: 525 EMLDDLILIMRGAAASP 541
           E LD L   M+     P
Sbjct: 798 ENLDVLTDEMKWVGYMP 814



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 204/456 (44%), Gaps = 87/456 (19%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC-----------GQ 70
           T  H  Q  +  ++L   KQ+H++++        FV+  LI  Y  C           G 
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 71  PTQ--------------------SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           P +                    +Q +F+++  +DV  +NSLI+GY+ N  H + +++F 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M       D  T A + K    ++D   G+ IHGL++K+GF  DV+  ++L+ MY KC 
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
           K    +  F  MP++N  SW                                  +A+I G
Sbjct: 224 KLDCSIQFFHSMPEKNWVSW----------------------------------SAIIAG 249

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
            VQN DL   L LF EMQ K  +  ++ +  SV  +C+ L  L  G Q+HG A++ +   
Sbjct: 250 CVQNDDLRGGLELFKEMQ-KAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGT 308

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           DV +  A +DMY KC +L  A+++F +S  N +  ++++I+ GY    KG          
Sbjct: 309 DVVIGTATLDMYMKCNNLSDAQKLF-NSLPNHNLQSYNAIIVGYARSDKG---------- 357

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRA 408
             LG   D +++ G   AC       EGL+++   + +      + IC    ++DM G+ 
Sbjct: 358 --LG--LDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSL---CQSNICVANAILDMYGKC 410

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           G L  A    + M    + S W A+++A   +GN E
Sbjct: 411 GALVEACLVFEEMVSRDAVS-WNAIIAAHEQNGNEE 445



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 205/456 (44%), Gaps = 33/456 (7%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H   + +G   +    + L+  YA C +   S   F+S+  K+   ++++I G V+N 
Sbjct: 195 QIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQND 254

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
                LELF  M  + V     T A++ +    +  L +G  +HG ++K  F  DV++  
Sbjct: 255 DLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGT 314

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS-------------------- 200
           + + MY+KC   S+   LF+ +P  N+ S+N  I G+A S                    
Sbjct: 315 ATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAV 374

Query: 201 --GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
             GD   +         + + N+    A+++ Y + G L EA ++F EM  +D +  N +
Sbjct: 375 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAI 434

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
            + +     +    LS    IH   I+  L  D  +  ALIDMYSKCG ++ A ++  D 
Sbjct: 435 -IAAHEQNGNEEKTLS--LFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKL-HDR 490

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              +  ++W++I+SG+ L  +  EA   ++KM+ +G  PD  T   +L  C     +  G
Sbjct: 491 LAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG 550

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI--WGALVSA 436
            +I+  +I    ++    I + +VDM  + G +    DF       P+     W A+V  
Sbjct: 551 KQIHAQIIKK-ELQSDAYISSTLVDMYSKCGNMQ---DFQLIFEKAPNRDFVTWNAMVCG 606

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
              HG  E + L     +QLE   P++   L+ L A
Sbjct: 607 YAQHGLGE-EALKIFEYMQLENVKPNHATFLAVLRA 641



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 5/233 (2%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V   N+T AT+   L   A   +++L KQ H+QI+     S+ ++S+ L+  Y+ CG   
Sbjct: 527 VDPDNFTYATI---LDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQ 583

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
             QL+F    ++D   +N+++ GY ++    EAL++F  M   NV P+  T   + +  G
Sbjct: 584 DFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACG 643

Query: 133 EIKDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSW 190
            +  +  G+   H +    G    +   + ++ +  + G+ S+ L L + MP + +   W
Sbjct: 644 HMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIW 703

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
              +S     G+  +  ++     Q++  +  A+  + N Y   G  +E   L
Sbjct: 704 RTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKL 756



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 36/218 (16%)

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           K +   +   CS    L  GKQ H   I  E    V + N LI MY KC  L+ A +VF+
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFD 101

Query: 317 ------------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVL- 345
                                         D+   +D ++W+S++SGY LH   H  V+ 
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGY-LHNGDHRKVID 160

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT-YRIKPTTEICACVVDM 404
           ++ +M  +G+  D  T   VL +C        G++I+   +   +     T   + ++DM
Sbjct: 161 VFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTG--SALLDM 218

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
             +  +LD ++ F  +MP E +   W A+++  V + +
Sbjct: 219 YAKCKKLDCSIQFFHSMP-EKNWVSWSAIIAGCVQNDD 255


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 188/541 (34%), Positives = 295/541 (54%), Gaps = 42/541 (7%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
             K  H+ ++  G + + F+ST+L+  YA  G  + S+  F+ I  KDVY +NS+I+ YV
Sbjct: 34  FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93

Query: 98  KNHGHNEALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            N   +EA+  F  +   S + PD +T   + K  G + D   G  IH  + K+GF  +V
Sbjct: 94  HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNV 150

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD-------------- 202
            +A SL+ MY + G      +LFD+MP R++GSWN  ISG   +G+              
Sbjct: 151 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 210

Query: 203 ----------------------FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                                   L+  + +VF+ +  ++V +W  +I GY QNG   EA
Sbjct: 211 GIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEA 270

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           + ++  M+    I PN+ + VS+LP  + +  L  G +IHG  I+  L+ DV +   LID
Sbjct: 271 IEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLID 330

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           +Y KCG L  A  +F      + ++TW++I+S +G+HG   + + L+ +M+  G KPD +
Sbjct: 331 VYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV 389

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T V +LSAC  SG + EG   +  ++  Y IKP+ +   C+VD+LGRAG L+ A DFIK 
Sbjct: 390 TFVSLLSACSHSGFVEEGKWCFR-LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKD 448

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP++P  SIWGAL+ A  +HGN E+   A   L +++ +N   YV LSN+YA+  +W+ V
Sbjct: 449 MPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGV 508

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540
            ++R++ ++RGLKK+PG S I ++ K   F   +++HP    IYE L  L   M+     
Sbjct: 509 DKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYI 568

Query: 541 P 541
           P
Sbjct: 569 P 569



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 147/340 (43%), Gaps = 46/340 (13%)

Query: 6   ARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
           AR+ F  +  R+  S  A +   +Q     ++L +  +   + + +  ++   +    + 
Sbjct: 169 ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVD 228

Query: 64  AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY-SNVSPDDF 122
            YA  G    +  VF  I  KDV  +N+LI GY +N   +EA+E++  M     + P+  
Sbjct: 229 MYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQG 288

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T  +I      +  L  GM IHG  IK    +DV +A  L+ +Y KCG+  + ++LF ++
Sbjct: 289 TWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQV 348

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           PQ +  +WN  IS H                                    +G  ++ L 
Sbjct: 349 PQESSVTWNAIISCHGI----------------------------------HGHAEKTLK 374

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ----IHGFAIRKELNHDVSLCNAL 298
           LF EM L + ++P+ V+ VS+L  CS    +  GK     +  + I+  L H       +
Sbjct: 375 LFGEM-LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKH----YGCM 429

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +D+  + G L+ A    +D     DA  W +++    +HG
Sbjct: 430 VDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHG 469


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 171/503 (33%), Positives = 288/503 (57%), Gaps = 15/503 (2%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQ-------SQLVFNSIQHKDVYLYNSLING 95
           H+ ++    I + F +++LI   A C  P+        +  +F+ IQ+ +++++N++I G
Sbjct: 37  HAYMIRTHIICDVFAASRLI---AFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRG 93

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           +  +   ++A   +       + PD+ T   + K   ++  +++G   HG  IK GF  D
Sbjct: 94  HSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKD 153

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V + NSL+ MY   G       +F  M   +V SW   I G    GD   V  +R++FDQ
Sbjct: 154 VYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGD---VESARKLFDQ 210

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  +N+  W+ MI+GY QN   D+A+ LF  +Q +  +  N+  +VSV+ +C+ L  L  
Sbjct: 211 MPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQG-VRANETVMVSVISSCAHLGALEL 269

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G++ H + ++  +  ++ L  AL+DMY++CGS+D A  VFED    +D ++W+++++G  
Sbjct: 270 GERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLP-ERDTLSWTALIAGLA 328

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           +HG    ++  +  MV  G  P  IT   VLSAC   GL+  G +I+ S+   +R++P  
Sbjct: 329 MHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRL 388

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           E   C+VD+LGRAG+L+ A  F+  MPV+P+  +WGAL+ A  +H N+E+ +   K LIQ
Sbjct: 389 EHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQ 448

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           L P++   YV LSN+YA+++ W+ V E+R MMK +GLKK PG S I + G+ H F++ D 
Sbjct: 449 LLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDS 508

Query: 516 AHPCSVSIYEMLDDLILIMRGAA 538
           +HP    I  M +++++ +R A 
Sbjct: 509 SHPEMDKIERMWEEILMRIRAAG 531



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/339 (19%), Positives = 132/339 (38%), Gaps = 77/339 (22%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS---- 91
           + +  Q+H  I+  G   + +V   L+  YA  G    + L+F  + + DV  + S    
Sbjct: 135 ISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRG 194

Query: 92  ---------------------------LINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
                                      +I+GY +N+  ++A+ELF  +    V  ++  +
Sbjct: 195 FNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVM 254

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
            ++      +  L +G   H   +K G  +++IL  +L+ MY +CG   + + +F+++P+
Sbjct: 255 VSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPE 314

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           R+  SW                                  TA+I G   +G  + +L  F
Sbjct: 315 RDTLSW----------------------------------TALIAGLAMHGYSERSLKYF 340

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD------VSLCNAL 298
             M ++  + P  ++  +VL  CS      GG    GF I + +  D      +     +
Sbjct: 341 ATM-VEAGLTPRDITFTAVLSACS-----HGGLVERGFQIFESMKRDHRVEPRLEHYGCM 394

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +D+  + G L+ A R         +A  W +++    +H
Sbjct: 395 VDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIH 433


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 177/520 (34%), Positives = 291/520 (55%), Gaps = 9/520 (1%)

Query: 23  VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ 82
           V+ F  +    +S+    Q H+ +L  G   NP ++ KL  +YA  G+   S  VFN+  
Sbjct: 47  VERFASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFD 106

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
             +V+ ++++I+ +V++   + A   +S M    V P+ FT +++ K       L  G +
Sbjct: 107 EPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC----SLESGKV 162

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H  +IK+G   D+ +   L+ +Y + G       LFD+MP+R++ S    ++ ++  G+
Sbjct: 163 LHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGE 222

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                ++R +F+ MK R+V  W  MI GY Q+G  +E+L LF  M +   I PN+V++++
Sbjct: 223 LD---KARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAI-PNEVTVLA 278

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL  C  L  L  G+ IH +   K +  +V +  ALIDMYSKCGSL+ AR VF D   +K
Sbjct: 279 VLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVF-DRIRDK 337

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D + W+S++ GY +HG    A+ L+ +M   G KP  IT +G+LSACG  GL+ EG   +
Sbjct: 338 DVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFF 397

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
             + + Y I+P  E   C+V++LGRAG L+ A   +K M +   P +WG L+    +H N
Sbjct: 398 RLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVN 457

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
            ++ +   K L+  +  N   YV LSN+YA++  W+ VA++RT+MK+ G++K  GCS I 
Sbjct: 458 IKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIE 517

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           +  K H F   ++ HP S  IY ML+++   ++    +P 
Sbjct: 518 VDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQ 557


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 174/496 (35%), Positives = 289/496 (58%), Gaps = 7/496 (1%)

Query: 45  QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
            +  LG  ++ FV    +  +++ G    ++ +F+    +DV  +N+LI GYV++    E
Sbjct: 146 HVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPRE 205

Query: 105 ALELFSNMYYSN--VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           ALELF  +      V PD+ T+        ++ DL +G  +H      G    V L N++
Sbjct: 206 ALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAV 265

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           M MYVKCG      ++F+ +  + V SW   I GHA  G   ++  +R +FD+M  R+V+
Sbjct: 266 MDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLG---MMEDARMLFDEMPERDVF 322

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W A++ GYVQN    EA+ LF EMQ + +++PN++++V++L  CS L  L  G  +H +
Sbjct: 323 PWNALMAGYVQNKQGKEAIALFHEMQ-ESKVDPNEITMVNLLSACSQLGALEMGMWVHHY 381

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
             R +L   V+L  +L+DMY+KCG++  A  +F++   +K+A+TW++++ G   HG   E
Sbjct: 382 IDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIP-DKNALTWTAMICGLANHGHADE 440

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+  + +M+ LG +PD IT +GVLSAC  +GL+ EG + ++ +   Y ++   +  +C++
Sbjct: 441 AIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMI 500

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGRAG LD A   + TMP++P   +WGAL  A  MHGN  + + A   L++L+P +  
Sbjct: 501 DLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSG 560

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            YV L+N+YA +       ++R MM+  G++K PGCS I ++G  H F V DK+H  +++
Sbjct: 561 IYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTIA 620

Query: 523 IYEMLDDLILIMRGAA 538
           IY+ L  + L M+  A
Sbjct: 621 IYDCLHGITLQMKHTA 636



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 168/373 (45%), Gaps = 67/373 (17%)

Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
           S+  PD  T   + K    ++    G  + G   K+GF  DV + N+ +  +   G    
Sbjct: 115 SSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVL 174

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
              LFDE P R+V SWN                                   +I GYV++
Sbjct: 175 ARRLFDESPARDVVSWNT----------------------------------LIGGYVRS 200

Query: 235 GDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           G   EAL LF  +    + + P++V+++  +  C+ +  L  GK++H F   K +   V 
Sbjct: 201 GLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVR 260

Query: 294 LCNALIDMYSKCGSLDCARRVFE------------------------------DSSFNKD 323
           L NA++DMY KCGSL+ A+ VFE                              D    +D
Sbjct: 261 LMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERD 320

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
              W+++++GY  + +G EA+ L+++M      P+ IT+V +LSAC + G +  G+ +++
Sbjct: 321 VFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHH 380

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
             I+ +++  +  +   +VDM  + G + +A+   K +P + +   W A++     HG++
Sbjct: 381 -YIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIP-DKNALTWTAMICGLANHGHA 438

Query: 444 EMQDLAYKSLIQL 456
           +     ++ +I L
Sbjct: 439 DEAIEYFQRMIDL 451



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 91/176 (51%), Gaps = 4/176 (2%)

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L L+  +       P+ ++   +L  C+ L     G  + G   +   + DV + NA + 
Sbjct: 105 LPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVH 164

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS--KPD 358
            +S  GS+  ARR+F++S   +D ++W++++ GY   G   EA+ L+ ++V  G   +PD
Sbjct: 165 FWSVSGSMVLARRLFDESP-ARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPD 223

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
            +T++G +S C + G +  G  ++   +++  ++ T  +   V+DM  + G L+ A
Sbjct: 224 EVTMIGAVSGCAQMGDLELGKRLHE-FVDSKGVRCTVRLMNAVMDMYVKCGSLELA 278


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 176/504 (34%), Positives = 296/504 (58%), Gaps = 21/504 (4%)

Query: 12  LVTSRNY-TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
           L T R++ T++++   L+   T  +L+   Q H++I+  G   + F+ ++ +T       
Sbjct: 64  LPTLRSFDTTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSN 120

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
            + +  VFN +      L+N+ I GY +N+  +  + LF  M  S+  PD FT  ++ K 
Sbjct: 121 FSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKA 180

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
             ++  +  G+  HG +++ G   DV +  SL+ +Y KCG+      +FDEM +RNV SW
Sbjct: 181 CSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSW 240

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
              I+G+AS   FS +V +R++FD+M  +N  +W A+I+GYV+ GDL  A  +F EM  +
Sbjct: 241 TAMIAGYAS---FSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHR 297

Query: 251 DR------------IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-HDVSLCNA 297
           +R            ++P++  +VS++  CS +  L   K +  +  +  ++ H   +  A
Sbjct: 298 NRDVVAWSALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAA 357

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           LIDM +KCGS+D A ++FE+    +D I++ S++ G  +HG G +AV L+++M+  G  P
Sbjct: 358 LIDMNAKCGSMDRATKLFEEMP-KRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTP 416

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           D +    +L+AC R+GL++EG   + S+   Y I P+ +  AC+VD+LGRAG+L  A + 
Sbjct: 417 DDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYEL 476

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
           +K+MPVEP    WGAL+ A  +H + E+ ++    L +LEP+N  NYV LSN+YA++ +W
Sbjct: 477 LKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQW 536

Query: 478 DAVAELRTMMKDRGLKKSPGCSWI 501
             V+ LR  M++RG++K PGCSWI
Sbjct: 537 LDVSLLRNKMRERGIRKIPGCSWI 560


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 188/496 (37%), Positives = 283/496 (57%), Gaps = 5/496 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H   + LG  S  FV   LI  Y +CG    ++ +F+ I  K +  +NS+I GY      
Sbjct: 111 HGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNW 170

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EA  LF  M    + PD FT   +  +  + +DL++G  +H      G  +D+I+ N+L
Sbjct: 171 KEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNAL 230

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + MY KCG       +FD   ++NV SW   IS +A  G   +   +R++FDQM  +NV 
Sbjct: 231 VDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEV---ARQIFDQMPGKNVV 287

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +W +MI+ Y++ G   EAL LF +M+   R+ P++ +LVS+L  CS L  L  GK+IH +
Sbjct: 288 SWNSMISCYLREGQYREALDLFNKMR-NSRVVPDEATLVSILAACSQLGDLVMGKKIHNY 346

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            +  +  + V+L N+LIDMY+KCG +  A  +F +    K+ ++W+ I+    LHG G E
Sbjct: 347 ILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMP-GKNLVSWNVIIGALALHGCGLE 405

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ L+ +M   G+ PD IT+ G+LSAC  SGL++ GL  ++ +   YR+    E  AC+V
Sbjct: 406 AIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMV 465

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGR G L  A++ I  MP++P   +WGAL+ A  +HGN E+     K L++LEP +  
Sbjct: 466 DLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGG 525

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            YV +SN+Y  ++RW+ V ++R +M DRG+KK    S I I G  + F V DK H  S S
Sbjct: 526 LYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSS 585

Query: 523 IYEMLDDLILIMRGAA 538
           IY MLD L   +R A 
Sbjct: 586 IYAMLDQLTDHLRSAG 601



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 207/441 (46%), Gaps = 74/441 (16%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL--CGQPTQSQLVFNSIQHKDVYLYNS 91
           R LKL    H+QI+  G  +      KLI+  A+   G    +Q +F+ I   + ++YNS
Sbjct: 2   RGLKLL---HAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNS 58

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           LI GY  +    +A+ LF  M  S +SP++FTL  + K  G        +L+HGL+IK+G
Sbjct: 59  LIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLG 118

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
               V + N+L+++YV CG       LFD++  + + SWN                    
Sbjct: 119 IGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWN-------------------- 158

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                         +MI GY   G+  EA +LF +M+ +  +EP+  + V++L  CS   
Sbjct: 159 --------------SMIGGYAHMGNWKEAFLLFRKMR-EWGMEPDGFTFVNLLSVCSQSR 203

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  G+ +H       +  D+ + NAL+DMY+KCG+L  A+ +F D +  K+ ++W+S++
Sbjct: 204 DLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIF-DRTQEKNVVSWTSMI 262

Query: 332 SGYGLH-------------------------------GKGHEAVLLYNKMVCLGSKPDII 360
           S Y  H                               G+  EA+ L+NKM      PD  
Sbjct: 263 SAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEA 322

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+V +L+AC + G +  G +I+N +++       T +   ++DM  + G +  ALD    
Sbjct: 323 TLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVT-LYNSLIDMYAKCGPVVTALDIFLE 381

Query: 421 MPVEPSPSIWGALVSASVMHG 441
           MP +   S W  ++ A  +HG
Sbjct: 382 MPGKNLVS-WNVIIGALALHG 401



 Score = 38.5 bits (88), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            AT+   L   +    L + K+ H+ ILS        +   LI  YA CG    +  +F 
Sbjct: 321 EATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFL 380

Query: 80  SIQHKDVYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTLATI 127
            +  K++  +N +I G +  HG   EA++LF  M      PD+ TL  +
Sbjct: 381 EMPGKNLVSWNVII-GALALHGCGLEAIKLFEEMQADGTLPDEITLTGL 428


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 182/540 (33%), Positives = 293/540 (54%), Gaps = 62/540 (11%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ--HKDVYLYNSLINGYV 97
           ++ H+Q+L  G   NP  + +L++AYAL      S+ VF++I+  H D +L N+++  Y 
Sbjct: 369 RELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYA 428

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML-----IHGLSIKIGF 152
                 +AL  FS M       D FT + +      IK L+   +     +H   +K+G 
Sbjct: 429 LGGAPRDALAAFSAMPRR----DSFTYSFL------IKALSAAGVAPVRAVHSHVVKLGS 478

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
           V D  + N+L+  Y K G FS+   +FDEMP+R+V SWN  ++     G+ +    +R++
Sbjct: 479 VEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELA---GARKL 535

Query: 213 FDQMKR-------------------------------RNVYAWTAMINGYVQNGDLDEAL 241
           FD+M                                 RNV +W+ M++GY + GDL+ A 
Sbjct: 536 FDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMAR 595

Query: 242 VLFLEMQLKD-----------RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           V+F +M  K+            +E +  ++VS+L  C+    LS GK+IH +  ++ L  
Sbjct: 596 VIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR 655

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
              +CNALIDM+ KCG ++ A  VF+  +  KD+++W+SI+ G+ +HG G +A+ L+ +M
Sbjct: 656 STHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQM 715

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G  PD +T++ VLSAC   G ++EG   ++++   Y I P  E   C++D+LGR G 
Sbjct: 716 KQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGL 775

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           +  A+D IK+MP EP+  IWG+L+SA  +H N E  ++A   L +L+P N  NY  LSN+
Sbjct: 776 IKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNI 835

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YA + +W  +A+ R  MK  G +K+ G SW+ ++   H F+V D+ H  S  I EM+D L
Sbjct: 836 YAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRL 895



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 4/166 (2%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           A V   L   A   SL L K+ H  +       +  V   LI  +  CG   ++  VF++
Sbjct: 623 AAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDT 682

Query: 81  -IQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
               KD   +NS+I G+   HGH ++ALELF+ M     +PD  T+  +      +  ++
Sbjct: 683 ETVQKDSVSWNSIIGGFAM-HGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVD 741

Query: 139 VG-MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
            G      +    G +  +     ++ +  + G   E ++L   MP
Sbjct: 742 EGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMP 787


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 171/475 (36%), Positives = 271/475 (57%), Gaps = 44/475 (9%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +I+ YA  G  +Q++ +F+    +DV+ + ++++GYV+N   +EA   F  M   N    
Sbjct: 241 MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE--- 297

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
                                               +  N++++ YV+  K      LF+
Sbjct: 298 ------------------------------------VSYNAMIAGYVQTKKMDIARELFE 321

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            MP RN+ SWN  I+G+   GD   + ++R+ FD M +R+  +W A+I GY Q+G  +EA
Sbjct: 322 SMPCRNISSWNTMITGYGQIGD---IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L +F+E++ +D    N+ +    L TC+ +  L  GKQIHG A++        + NAL+ 
Sbjct: 379 LNMFVEIK-QDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLA 437

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY KCGS+D A   FE     KD ++W+++++GY  HG G +A+ ++  M   G KPD I
Sbjct: 438 MYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEI 496

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+VGVLSAC  +GL++ G E + S+   Y + PT++   C++D+LGRAG+L+ A D I+ 
Sbjct: 497 TMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRN 556

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP +P  + WGAL+ AS +HGN+E+ + A + + ++EP+N   YV LSNLYA+S RW   
Sbjct: 557 MPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDA 616

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            ++R+ M+D G++K PG SW+ +  K H FSV D +HP    IY  L++L L MR
Sbjct: 617 DKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMR 671



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 189/399 (47%), Gaps = 35/399 (8%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSP 119
           ++T Y    +   ++ +F+ +  KDV  +NSL++GY +N   +EA E+F NM   N +S 
Sbjct: 117 MLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISW 176

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +    A +   +G I++    +L    S       D+I  N LM  +V+  K  +   LF
Sbjct: 177 NGLLAAYVH--NGRIEE--ACLLFESKSD-----WDLISWNCLMGGFVRKKKLGDARWLF 227

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D+MP R+  SWN  ISG+A  G  S   ++RR+FD+   R+V+ WTAM++GYVQNG LDE
Sbjct: 228 DKMPVRDAISWNTMISGYAQGGGLS---QARRLFDESPTRDVFTWTAMVSGYVQNGMLDE 284

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH-----DVSL 294
           A   F EM  K+ +  N +              ++G  Q     I +EL       ++S 
Sbjct: 285 AKTFFDEMPEKNEVSYNAM--------------IAGYVQTKKMDIARELFESMPCRNISS 330

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            N +I  Y + G +  AR+ F D    +D ++W++I++GY   G   EA+ ++ ++   G
Sbjct: 331 WNTMITGYGQIGDIAQARKFF-DMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
              +  T    LS C     +  G +I+   +          +   ++ M  + G +D A
Sbjct: 390 ESLNRATFGCALSTCADIAALELGKQIHGQAVKM-GYGTGCFVGNALLAMYFKCGSIDEA 448

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
            D  + +  E     W  +++    HG        ++S+
Sbjct: 449 NDTFEGIE-EKDVVSWNTMLAGYARHGFGRQALTVFESM 486



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 152/312 (48%), Gaps = 46/312 (14%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS---GDFSLVVRSRRVFDQM 216
           N+++S Y++  KF+   NLFD+MP+R++ SWNV ++G+  +   GD      +RR+FD M
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGD------ARRLFDLM 137

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV-----------LP 265
             ++V +W ++++GY QNG +DEA  +F  M  K+ I  N +    V             
Sbjct: 138 PEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197

Query: 266 TCSSLIGLSGGKQIHGFAIRKELN-----------HDVSLCNALIDMYSKCGSLDCARRV 314
           + S    +S    + GF  +K+L             D    N +I  Y++ G L  ARR+
Sbjct: 198 SKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRL 257

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F D S  +D  TW+++VSGY  +G   EA   +++M     + + ++   +++   ++  
Sbjct: 258 F-DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKK 312

Query: 375 INEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           ++   E++ S+       P   I +   ++   G+ G + +A  F   MP     S W A
Sbjct: 313 MDIARELFESM-------PCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVS-WAA 364

Query: 433 LVSASVMHGNSE 444
           +++     G+ E
Sbjct: 365 IIAGYAQSGHYE 376



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 2/217 (0%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT    L   A   +L+L KQ H Q + +G+ +  FV   L+  Y  CG   ++   F  
Sbjct: 395 ATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEG 454

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           I+ KDV  +N+++ GY ++    +AL +F +M  + V PD+ T+  +         L+ G
Sbjct: 455 IEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRG 514

Query: 141 M-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHA 198
               + ++   G +        ++ +  + G+  E  +L   MP Q    SW   +    
Sbjct: 515 TEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASR 574

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
             G+  L  ++  +  +M+ +N   +  + N Y  +G
Sbjct: 575 IHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASG 611



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 38/142 (26%)

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           +GL++ G E +  +   Y + PT++   C++D+LGR  +L+                  G
Sbjct: 777 TGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE-----------------G 819

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
           AL+ AS +HGN+E+ + A +   ++ P+N                        + M+D G
Sbjct: 820 ALLGASRIHGNTELGEKAAQMFFKMGPQNSG---------------------ISKMRDVG 858

Query: 492 LKKSPGCSWISIHGKTHCFSVA 513
           ++K PG SW  +  K H FSV 
Sbjct: 859 VQKVPGYSWFEVQNKIHTFSVG 880


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 179/510 (35%), Positives = 285/510 (55%), Gaps = 39/510 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ---SQLVFNSIQHKDVYLYNS 91
           S+    Q+H+ IL  G I + F +++LI + +          +  +F+ I + + Y++N+
Sbjct: 19  SISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNT 78

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I  Y  +     AL +F  M +++V PD +T     K  G    +  G  IHG  +K G
Sbjct: 79  IIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTG 138

Query: 152 FVVDVILANSLMSMYVKCG-------------------------KFSE------CLNLFD 180
              D+ + N+L+ +Y  CG                          ++E        +LFD
Sbjct: 139 LGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFD 198

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           EM +RNV SWN  ISG+   G   L+  +RRVF +   +NV +W AMI GY   G   E 
Sbjct: 199 EMTERNVESWNFMISGYVGVG---LLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEV 255

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           LVLF +MQ    ++P+  +LVSVL  C+ +  LS G+ +H +  +  ++ D  +  AL+D
Sbjct: 256 LVLFEDMQ-HAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVD 314

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MYSKCGS++ A  VF +S   KD  TW+SI+SG   HG G  A+ ++++M+  G KP+ +
Sbjct: 315 MYSKCGSIEKALEVF-NSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEV 373

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T V VLSAC R+GL++EG E++N +++ + I+PT E   C+VD+LGR G L+ A + ++ 
Sbjct: 374 TFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQK 433

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP + +  +W +L+ A   HGN E+ +   + L++L P+  S++V LSN+YAS  RW  V
Sbjct: 434 MPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDV 493

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
            E+R  M+ +G++K PGCS I + G  + F
Sbjct: 494 MEVRQKMRAQGVRKDPGCSMIEVDGTVYEF 523



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 5/227 (2%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           FV+T L+  Y+ CG   ++  VFNS   KD+  +NS+I+G   +     AL++FS M   
Sbjct: 307 FVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVE 366

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI-GFVVDVILANSLMSMYVKCGKFSE 174
              P++ T   +         L+ G  +  L + + G    +     ++ +  + G   E
Sbjct: 367 GFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEE 426

Query: 175 CLNLFDEMPQRNVG-SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
              L  +MPQ+     W   +    + G+  L  R  +   ++  +   ++  + N Y  
Sbjct: 427 AEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYAS 486

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI---GLSGGK 277
            G   + + +  +M+ +   +    S++ V  T    +   GL  GK
Sbjct: 487 MGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGEGLVSGK 533


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 188/524 (35%), Positives = 291/524 (55%), Gaps = 47/524 (8%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+T+   L   A   SL+  K+ H   +  G + +  V T ++  Y  C     ++ +F+
Sbjct: 220 SSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFD 279

Query: 80  SIQ-HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF------TLATISKLSG 132
            +   K+   +++++  YV      EALELF  +    +  DD       TLAT+ ++  
Sbjct: 280 MMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLL---MLKDDVIVLSAVTLATVIRVCA 336

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            + DL+ G  +H  +IK GFV+D+++ N+L+SMY KCG                      
Sbjct: 337 NLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCG---------------------- 374

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                       ++  + R F++M  R+  ++TA+I+GYVQNG+ +E L +FLEMQL   
Sbjct: 375 ------------IINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSG- 421

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           I P K +L SVLP C+ L GL  G   H +AI      D  +CNALIDMY+KCG +D AR
Sbjct: 422 INPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTAR 481

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           +VF D    +  ++W++++  YG+HG G EA+LL++ M   G KPD +T + ++SAC  S
Sbjct: 482 KVF-DRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHS 540

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           GL+ EG   +N++   + I P  E  AC+VD+L RAG       FI+ MP+EP   +WGA
Sbjct: 541 GLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGA 600

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
           L+SA  ++ N E+ +   K + +L PE+  N+V LSN+Y++  RWD  A++R   K++G 
Sbjct: 601 LLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGF 660

Query: 493 KKSPGCSWISIHGKTHCF-SVADKAHPCSVSIYEMLDDLILIMR 535
           +KSPGCSWI I G  H F     ++HP    I   LD+L++ M+
Sbjct: 661 EKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMK 704



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 130/478 (27%), Positives = 225/478 (47%), Gaps = 66/478 (13%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISN------PFVSTKLITAYALC 68
           S  Y +  ++  +Q  +  R  KL  Q   + L   H +N      PF   KL+  Y  C
Sbjct: 8   SLEYCTVLLESCIQSKSLFRG-KLIHQHLLKCLHRTHETNLTNFDVPF--EKLVDLYIAC 64

Query: 69  GQPTQSQLVFNSIQH--KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
            +   ++ VF+ + H  K+V L+N LI  Y  N  + EA++L+  M    ++P+ FT   
Sbjct: 65  SELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPF 124

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           + K    +K+ + G  IH    ++    +V ++ +L+  Y KCG    CL+         
Sbjct: 125 VLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCG----CLD--------- 171

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY-VQNGDLDEALVLFL 245
                                 ++ VFD+M +R+V AW +MI+G+ +  G  DE   L +
Sbjct: 172 ---------------------DAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLV 210

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
           +MQ  + + PN  ++V VLP  + +  L  GK+IHGF +R+    DV +   ++D+Y KC
Sbjct: 211 QMQ--NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKC 268

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII----- 360
             +D ARR+F+     K+ +TWS++V  Y +     EA+ L+ +++ L  K D+I     
Sbjct: 269 QCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLML--KDDVIVLSAV 326

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKP----TTEICACVVDMLGRAGQLDRALD 416
           T+  V+  C     ++ G     + ++ Y IK        +   ++ M  + G ++ A+ 
Sbjct: 327 TLATVIRVCANLTDLSTG-----TCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMR 381

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           F   M +  + S + A++S  V +GNSE + L     +QL   NP      S L A +
Sbjct: 382 FFNEMDLRDAVS-FTAIISGYVQNGNSE-EGLRMFLEMQLSGINPEKATLASVLPACA 437



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 44/320 (13%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           ++ T+   ++V A    L      H   +  G + +  V   L++ YA CG    +   F
Sbjct: 324 SAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFF 383

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           N +  +D   + ++I+GYV+N    E L +F  M  S ++P+  TLA++      +  L+
Sbjct: 384 NEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLH 443

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G   H  +I  GF  D ++ N+L+ MY KCGK      +FD M +R + SWN       
Sbjct: 444 YGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWN------- 496

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                       MI  Y  +G   EAL+LF  MQ  + ++P+ V
Sbjct: 497 ---------------------------TMIIAYGIHGIGLEALLLFDNMQ-SEGLKPDDV 528

Query: 259 SLVSVLPTCSSLIGLSGGK-----QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           + + ++  CS    ++ GK         F I   + H       ++D+ S+ G       
Sbjct: 529 TFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYA----CMVDLLSRAGLFKEVHS 584

Query: 314 VFEDSSFNKDAITWSSIVSG 333
             E      D   W +++S 
Sbjct: 585 FIEKMPLEPDVRVWGALLSA 604



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 118/282 (41%), Gaps = 19/282 (6%)

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-KELNHDVSLCN------ALI 299
           MQL+ R+     +++  L +C     L  GK IH   ++     H+ +L N       L+
Sbjct: 1   MQLRTRLSLEYCTVL--LESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLV 58

Query: 300 DMYSKCGSLDCARRVFEDSSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           D+Y  C  L  AR VF+      K+ + W+ ++  Y  +G   EA+ LY KM+  G  P+
Sbjct: 59  DLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPN 118

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
             T   VL AC      +EG EI+   I   R++    +   +VD   + G LD A +  
Sbjct: 119 RFTFPFVLKACSALKEASEGREIHCD-IKRLRLESNVYVSTALVDFYAKCGCLDDAKEVF 177

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE---NPSNYVSLSNLYASSR 475
             M      + W +++S   +H  S   D   + L+Q++ +   N S  V +    A   
Sbjct: 178 DKMHKRDVVA-WNSMISGFSLHEGS--YDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVN 234

Query: 476 RWDAVAELRTMMKDRGLKKS--PGCSWISIHGKTHCFSVADK 515
                 E+      RG       G   + ++GK  C   A +
Sbjct: 235 SLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARR 276



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 2/182 (1%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           N   AT+   L   A    L     SH   +  G  ++  +   LI  YA CG+   ++ 
Sbjct: 423 NPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARK 482

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIK 135
           VF+ +  + +  +N++I  Y  +    EAL LF NM    + PDD T +  IS  S    
Sbjct: 483 VFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGL 542

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRI 194
                   + ++   G +  +     ++ +  + G F E  +  ++MP + +V  W   +
Sbjct: 543 VAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALL 602

Query: 195 SG 196
           S 
Sbjct: 603 SA 604


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 178/506 (35%), Positives = 282/506 (55%), Gaps = 20/506 (3%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           +++  +    +L LG  S+ FVS  +I     CG    ++ +F+    +D+  +NS+ING
Sbjct: 95  IRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMING 154

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           YV+     EAL  +  M    + PD+ T+  +     +++DL++G   H    + G  + 
Sbjct: 155 YVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLT 214

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V LAN+LM MY+KCG       LFD M  + + SW   +                  FD+
Sbjct: 215 VPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTML------------------FDE 256

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  ++V  W AMI GYV      EAL LF EMQ  + I P++V++VS L  CS L  L  
Sbjct: 257 MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGALDV 315

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G  IH +  + EL+ +V+L  ALIDMY+KCG +  A +VF++    ++++TW++I+SG  
Sbjct: 316 GIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELP-GRNSLTWTAIISGLA 374

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           LHG  H A+  +++M+     PD +T +G+LSAC   GL+ EG + ++ + + + + P  
Sbjct: 375 LHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKL 434

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           +  +C+VD+LGRAG L+ A + IK+MP+E    +WGAL  A  +HGN  M + A   L+Q
Sbjct: 435 KHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQ 494

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           ++P +   YV L+N+Y  +  W    + R +M+ RG++K+PGCS I ++G  + F V DK
Sbjct: 495 MDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDK 554

Query: 516 AHPCSVSIYEMLDDLILIMRGAAASP 541
           +HP S  IYE L  L   +     +P
Sbjct: 555 SHPQSEQIYECLIQLTRQLELVECTP 580



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 204/416 (49%), Gaps = 63/416 (15%)

Query: 50  GHISNPFVSTKLITAYALCGQPTQSQL------VFNSIQHKDVYLYNSLINGYVKNHGHN 103
           G I + F S++LI   A C       L      +FN+ ++ + + +N  I G++ +    
Sbjct: 5   GLIEDGFASSRLI---AFCAISEWRDLDYCTNILFNT-RNPNTFSWNVAIRGFLDSENPR 60

Query: 104 EALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           EA+ L+  +   +   PD++T   + K    +  + +G  I G  + +GF  D+ ++N++
Sbjct: 61  EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 120

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + + V CG       +FD+   R++ SWN  I                            
Sbjct: 121 IHLLVSCGDLDGARKMFDKSCVRDLVSWNSMI---------------------------- 152

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
                 NGYV+ G   EAL  + EM+++  I+P++V+++ V+ +C+ L  L  G++ H +
Sbjct: 153 ------NGYVRRGWAYEALNFYREMKVEG-IKPDEVTMIGVVSSCAQLEDLDLGRESHCY 205

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE---------------DSSFNKDAITW 327
                L   V L NAL+DMY KCG+L+ AR++F+               D   +KD + W
Sbjct: 206 IEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPW 265

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++++ GY    +G EA+ L+N+M  +   PD +T+V  LSAC + G ++ G+ I++  I 
Sbjct: 266 NAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHH-YIE 324

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            + +     +   ++DM  + G++ +A+   + +P   S + W A++S   +HGN+
Sbjct: 325 KHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLT-WTAIISGLALHGNA 379



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 133/274 (48%), Gaps = 18/274 (6%)

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           +  N ++W   I G++ + +  EA+VL+  +   D  +P+  +   +   C+ L  +  G
Sbjct: 39  RNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMG 98

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
            +I G  +    + D+ + NA+I +   CG LD AR++F D S  +D ++W+S+++GY  
Sbjct: 99  SEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF-DKSCVRDLVSWNSMINGYVR 157

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
            G  +EA+  Y +M   G KPD +T++GV+S+C +   ++ G E +   I    +K T  
Sbjct: 158 RGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESH-CYIEENGLKLTVP 216

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVE-------------PSPSI--WGALVSASVMHG 441
           +   ++DM  + G L+ A     +M  +             P   +  W A++   V H 
Sbjct: 217 LANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYV-HA 275

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
           N   + LA  + +Q    NP     +S L A S+
Sbjct: 276 NRGKEALALFNEMQAMNINPDEVTMVSCLSACSQ 309


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 171/475 (36%), Positives = 271/475 (57%), Gaps = 44/475 (9%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +I+ YA  G  +Q++ +F+    +DV+ + ++++GYV+N   +EA   F  M   N    
Sbjct: 241 MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE--- 297

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
                                               +  N++++ YV+  K      LF+
Sbjct: 298 ------------------------------------VSYNAMIAGYVQTKKMDIARELFE 321

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            MP RN+ SWN  I+G+   GD   + ++R+ FD M +R+  +W A+I GY Q+G  +EA
Sbjct: 322 SMPCRNISSWNTMITGYGQIGD---IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L +F+E++ +D    N+ +    L TC+ +  L  GKQIHG A++        + NAL+ 
Sbjct: 379 LNMFVEIK-QDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLA 437

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY KCGS+D A   FE     KD ++W+++++GY  HG G +A+ ++  M   G KPD I
Sbjct: 438 MYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEI 496

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+VGVLSAC  +GL++ G E + S+   Y + PT++   C++D+LGRAG+L+ A D I+ 
Sbjct: 497 TMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRN 556

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP +P  + WGAL+ AS +HGN+E+ + A + + ++EP+N   YV LSNLYA+S RW   
Sbjct: 557 MPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDA 616

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            ++R+ M+D G++K PG SW+ +  K H FSV D +HP    IY  L++L L MR
Sbjct: 617 DKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMR 671



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 185/387 (47%), Gaps = 35/387 (9%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSP 119
           ++T Y    +   ++ +F+ +  KDV  +NSL++GY +N   +EA E+F NM   N +S 
Sbjct: 117 MLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISW 176

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +    A +   +G I++    +L    S       D+I  N LM  +V+  K  +   LF
Sbjct: 177 NGLLAAYVH--NGRIEE--ACLLFESKSD-----WDLISWNCLMGGFVRKKKLGDARWLF 227

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D+MP R+  SWN  ISG+A  G  S   ++RR+FD+   R+V+ WTAM++GYVQNG LDE
Sbjct: 228 DKMPVRDAISWNTMISGYAQGGGLS---QARRLFDESPTRDVFTWTAMVSGYVQNGMLDE 284

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH-----DVSL 294
           A   F EM  K+ +  N +              ++G  Q     I +EL       ++S 
Sbjct: 285 AKTFFDEMPEKNEVSYNAM--------------IAGYVQTKKMDIARELFESMPCRNISS 330

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            N +I  Y + G +  AR+ F D    +D ++W++I++GY   G   EA+ ++ ++   G
Sbjct: 331 WNTMITGYGQIGDIAQARKFF-DMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
              +  T    LS C     +  G +I+   +          +   ++ M  + G +D A
Sbjct: 390 ESLNRATFGCALSTCADIAALELGKQIHGQAVKM-GYGTGCFVGNALLAMYFKCGSIDEA 448

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHG 441
            D  + +  E     W  +++    HG
Sbjct: 449 NDTFEGIE-EKDVVSWNTMLAGYARHG 474



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 152/312 (48%), Gaps = 46/312 (14%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS---GDFSLVVRSRRVFDQM 216
           N+++S Y++  KF+   NLFD+MP+R++ SWNV ++G+  +   GD      +RR+FD M
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGD------ARRLFDLM 137

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV-----------LP 265
             ++V +W ++++GY QNG +DEA  +F  M  K+ I  N +    V             
Sbjct: 138 PEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197

Query: 266 TCSSLIGLSGGKQIHGFAIRKELN-----------HDVSLCNALIDMYSKCGSLDCARRV 314
           + S    +S    + GF  +K+L             D    N +I  Y++ G L  ARR+
Sbjct: 198 SKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRL 257

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F D S  +D  TW+++VSGY  +G   EA   +++M     + + ++   +++   ++  
Sbjct: 258 F-DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKK 312

Query: 375 INEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           ++   E++ S+       P   I +   ++   G+ G + +A  F   MP     S W A
Sbjct: 313 MDIARELFESM-------PCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVS-WAA 364

Query: 433 LVSASVMHGNSE 444
           +++     G+ E
Sbjct: 365 IIAGYAQSGHYE 376



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 2/217 (0%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT    L   A   +L+L KQ H Q + +G+ +  FV   L+  Y  CG   ++   F  
Sbjct: 395 ATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEG 454

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           I+ KDV  +N+++ GY ++    +AL +F +M  + V PD+ T+  +         L+ G
Sbjct: 455 IEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRG 514

Query: 141 M-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHA 198
               + ++   G +        ++ +  + G+  E  +L   MP Q    SW   +    
Sbjct: 515 TEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASR 574

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
             G+  L  ++  +  +M+ +N   +  + N Y  +G
Sbjct: 575 IHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASG 611


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 173/507 (34%), Positives = 303/507 (59%), Gaps = 14/507 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT----QSQLVFNSIQHKDVYLYN 90
           S+K  ++ H+Q++  G   +   +++++   A C  P      + LVF  I++ +++++N
Sbjct: 8   SMKDLQKIHAQLIKTGLAKDTIAASRVL---AFCTSPAGDINYAYLVFTQIRNPNLFVWN 64

Query: 91  SLINGYVKNHGHNEALELFSNMYYSN--VSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           ++I G+ ++   + A+ LF +M +++    P   T  ++ K   ++   + G  +HG  I
Sbjct: 65  TIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVI 124

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K+G   D  + N++++MYV CG   E   +FD     +V +WN  I G A  G+   + +
Sbjct: 125 KLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGE---IDK 181

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           SRR+FD+M  RN  +W +MI+GYV+ G   EA+ LF  MQ ++ I+P++ ++VS+L  C+
Sbjct: 182 SRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQ-EEGIKPSEFTMVSLLNACA 240

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            L  L  G+ IH + ++     +  +  A+IDMYSKCGS+D A +VF+ S+  K    W+
Sbjct: 241 CLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFK-SAPKKGLSCWN 299

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           S++ G  + G+G+EAV L++K+     KPD ++ +GVL+AC  +G+++   + +  +  T
Sbjct: 300 SLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSET 359

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           Y+I+P+ +  +C+VD+LGRAG L+ A + IK+MPV P   IWG+L+S+   +GN EM   
Sbjct: 360 YKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQ 419

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
           A K + +L+P   S+++ LSN+YA+   ++   E R  +K++ + K PGCS I ++G+ H
Sbjct: 420 AAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVH 479

Query: 509 CFSVADKAHPCSVSIYEMLDDLILIMR 535
            F    + HP S  IY  LDDL L ++
Sbjct: 480 EFVAGGRLHPRSKDIYHALDDLGLTLK 506



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 6/246 (2%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A   +L+  +  H  I+      N  V T +I  Y+ CG   ++  VF S 
Sbjct: 231 TMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSA 290

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA---TISKLSGEIKDLN 138
             K +  +NSLI G   +   NEA+ LFS +  SN+ PD  +     T    +G +    
Sbjct: 291 PKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAK 350

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGH 197
              L+   + KI     +   + ++ +  + G   E   L   MP   +   W   +S  
Sbjct: 351 DYFLLMSETYKIE--PSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSC 408

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
              G+  +  ++ +  +++      ++  + N Y  +   +EA+   L ++ K   +   
Sbjct: 409 REYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPG 468

Query: 258 VSLVSV 263
            SL+ V
Sbjct: 469 CSLIEV 474


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 179/525 (34%), Positives = 291/525 (55%), Gaps = 14/525 (2%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           F+ +    +++   K  H+ ++      + F+ TK++           + L+F  ++  +
Sbjct: 17  FVPILQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPN 76

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYY-------SNVSPDDFTLATISKLSGEIKDLN 138
            YLYN++I  +  N  +  A+  +  M         + + PD FT   + K    +   N
Sbjct: 77  GYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYN 136

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  +H    K G   ++ + N+L+ MY KC    +   +FD M +R+  SWN  ISGH 
Sbjct: 137 LGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHV 196

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
             G      ++  +FD M  R + +WTAMI+GY + G   +AL +F +MQ+   +EP+++
Sbjct: 197 GVGQMR---KAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVG-VEPDEI 252

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           S++SVLP C+ L  L  GK IH +  R  L    S+CNAL++MYSKCG +  A ++F+  
Sbjct: 253 SIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQM 312

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
           S   D I+WS+++ G   HGK  EA+ L+ +M     +P+ IT +G+LSAC  +G  NEG
Sbjct: 313 S-KGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEG 371

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           L  ++S+   Y I+P  E   C+VD+LGRAG+L +ALD I+ MP++P   IWG+L+S+  
Sbjct: 372 LAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCR 431

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
            H N ++  +A + L +LEP++  NYV LSN+YA   +WD V+ +R ++K + +KK+PG 
Sbjct: 432 THSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGS 491

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           S I I+     F   D + P S  I+ +L+  +L        PHL
Sbjct: 492 SLIDINNVVQEFVSWDDSKPFSRDIFWLLE--LLTSHQDTTDPHL 534


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 175/478 (36%), Positives = 272/478 (56%), Gaps = 44/478 (9%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +IT YA  G+  +++ +F+    +DV+ + ++++GY++N    EA ELF  M   N    
Sbjct: 256 IITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNE--- 312

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
                                               +  N++++ YV+  +      LFD
Sbjct: 313 ------------------------------------VSWNAMLAGYVQGERMEMAKELFD 336

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            MP RNV +WN  I+G+A  G  S    ++ +FD+M +R+  +W AMI GY Q+G   EA
Sbjct: 337 VMPCRNVSTWNTMITGYAQCGKIS---EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEA 393

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF++M+ ++    N+ S  S L TC+ ++ L  GKQ+HG  ++        + NAL+ 
Sbjct: 394 LRLFVQME-REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY KCGS++ A  +F++ +  KD ++W+++++GY  HG G  A+  +  M   G KPD  
Sbjct: 453 MYCKCGSIEEANDLFKEMA-GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDA 511

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+V VLSAC  +GL+++G + + ++   Y + P ++  AC+VD+LGRAG L+ A + +K 
Sbjct: 512 TMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKN 571

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP EP  +IWG L+ AS +HGN+E+ + A   +  +EPEN   YV LSNLYASS RW  V
Sbjct: 572 MPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDV 631

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
            +LR  M+D+G+KK PG SWI I  KTH FSV D+ HP    I+  L++L L M+ A 
Sbjct: 632 GKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAG 689



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 203/445 (45%), Gaps = 64/445 (14%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM-------- 112
           +I+ Y   G+   ++ +F+ +  +D+  +N +I GYV+N    +A ELF  M        
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSW 160

Query: 113 ------YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG-----------LSIKIGFVVD 155
                 Y  N   DD    ++     E  D++   L+             +  K      
Sbjct: 161 NTMLSGYAQNGCVDD--ARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           ++  N L+  +VK  K  E    FD M  R+V SWN  I+G+A SG    +  +R++FD+
Sbjct: 219 LVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGK---IDEARQLFDE 275

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
              ++V+ WTAM++GY+QN  ++EA  LF +M      E N+VS  ++         L+G
Sbjct: 276 SPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP-----ERNEVSWNAM---------LAG 321

Query: 276 GKQIHGFAIRKELN-----HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             Q     + KEL       +VS  N +I  Y++CG +  A+ +F D    +D ++W+++
Sbjct: 322 YVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF-DKMPKRDPVSWAAM 380

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++GY   G   EA+ L+ +M   G + +  +    LS C     +  G +++  +     
Sbjct: 381 IAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL----- 435

Query: 391 IKPTTEICACVVD-----MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           +K   E   C V      M  + G ++ A D  K M  +   S W  +++    HG  E+
Sbjct: 436 VKGGYET-GCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS-WNTMIAGYSRHGFGEV 493

Query: 446 QDLAYKSLIQ--LEPENPSNYVSLS 468
               ++S+ +  L+P++ +    LS
Sbjct: 494 ALRFFESMKREGLKPDDATMVAVLS 518



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 154/324 (47%), Gaps = 43/324 (13%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N ++S Y++ G+F     LFDEMP+R++ SWNV I G+  + +     ++R +F+ M  R
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLG---KARELFEIMPER 155

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV-----------SLVSVLPTCS 268
           +V +W  M++GY QNG +D+A  +F  M  K+ +  N +               +  +  
Sbjct: 156 DVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRE 215

Query: 269 SLIGLSGGKQIHGFAIRKELNH-----------DVSLCNALIDMYSKCGSLDCARRVFED 317
           +   +S    + GF  +K++             DV   N +I  Y++ G +D AR++F++
Sbjct: 216 NWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE 275

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
           S   +D  TW+++VSGY  +    EA  L++KM     + + ++   +L+   +   +  
Sbjct: 276 SPV-QDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYVQGERMEM 330

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRA--GQLDRALDFIKTMPVEPSPSIWGALVS 435
             E+++       + P   +      + G A  G++  A +    MP +  P  W A+++
Sbjct: 331 AKELFD-------VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIA 382

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPE 459
                G+S     A +  +Q+E E
Sbjct: 383 GYSQSGHSFE---ALRLFVQMERE 403



 Score = 45.8 bits (107), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 129/320 (40%), Gaps = 46/320 (14%)

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV--------------SLVSVLP 265
           ++  W   I+ Y++ G  +EAL +F  M     +  N +               L   +P
Sbjct: 63  DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP 122

Query: 266 T---CSSLIGLSG-------GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
                S  + + G       GK    F I  E   DV   N ++  Y++ G +D AR VF
Sbjct: 123 ERDLVSWNVMIKGYVRNRNLGKARELFEIMPE--RDVCSWNTMLSGYAQNGCVDDARSVF 180

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D    K+ ++W++++S Y  + K  EA +L+           +++   +L    +   I
Sbjct: 181 -DRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSR----ENWALVSWNCLLGGFVKKKKI 235

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            E  + ++S+     +   T     ++    ++G++D A       PV+   + W A+VS
Sbjct: 236 VEARQFFDSMNVRDVVSWNT-----IITGYAQSGKIDEARQLFDESPVQDVFT-WTAMVS 289

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
             +    + M + A +   ++   N  ++ ++   Y    R +   EL  +M  R +   
Sbjct: 290 GYI---QNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVS-- 344

Query: 496 PGCSWIS-IHGKTHCFSVAD 514
              +W + I G   C  +++
Sbjct: 345 ---TWNTMITGYAQCGKISE 361


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 182/507 (35%), Positives = 284/507 (56%), Gaps = 31/507 (6%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L +  Q H+ +    + ++ ++ + LI  Y+ CG    ++ VF+ +  +++  +NSLI  
Sbjct: 163 LNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITC 222

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG-FVV 154
           Y +N   +EALE+F  M  S + PD+ TLA++      +  L  G+ IH   +K   F  
Sbjct: 223 YEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRD 282

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D++L N+L+ MY KC K +E   +FD M  RNV S    +SG+A +     V  +R +F 
Sbjct: 283 DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAAS---VKAARFMFS 339

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M +RNV +W A+I GY QNG+ +EAL LF  ++ +           S+ PT  +   L 
Sbjct: 340 KMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRE-----------SIWPTHYTFGNL- 387

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
                        L  D+ + N+LIDMY KCGS++   RVFE     +D ++W++I+ GY
Sbjct: 388 -------------LKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-ERDCVSWNAIIVGY 433

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G G EA+ ++ KM+  G KPD +T++GVL AC  +GL+ EG   + S +  + + P 
Sbjct: 434 AQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFS-MEEHGLIPL 492

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            +   C+VD+LGRAG L+ A + I+ MPV P   +WG+L++A  +HGN EM   A + L+
Sbjct: 493 KDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLL 552

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +++P N   YV LSN+YA   RW  V  +R +M+ +G+ K PGCSWI +  + H F V D
Sbjct: 553 EIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKD 612

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASP 541
           K+HP    IY +L  L   M+     P
Sbjct: 613 KSHPHRKQIYSVLKMLTEQMKRVGYIP 639



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 154/282 (54%), Gaps = 5/282 (1%)

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           L+H   +   F +++ + N L+ +Y KC    +   LFD MPQRN  +WN  IS    SG
Sbjct: 36  LVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSG 95

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
               +  + R+F  M   +  +W +M++G+ Q+   +E+L  F++M  +D +  N+ S  
Sbjct: 96  ---FLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFL-LNEYSFG 151

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S L  C+ L+ L+ G Q+H    +   + DV + +ALIDMYSKCGS+ CA  VF      
Sbjct: 152 SALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVF-SGMIE 210

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           ++ +TW+S+++ Y  +G   EA+ ++ +M+  G +PD +T+  V+SAC     + EGL+I
Sbjct: 211 RNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQI 270

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
           +  V+ T + +    +   +VDM  +  +++ A      M +
Sbjct: 271 HARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 168/342 (49%), Gaps = 42/342 (12%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    LI+     G   ++  +F S+   D   +NS+++G+ ++    E+LE F  M+
Sbjct: 80  NTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMH 139

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
             +   ++++  +       + DLN+G  +H L  K  +  DV + ++L+ MY KCG  +
Sbjct: 140 REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
               +F  M +RN+ +WN                                  ++I  Y Q
Sbjct: 200 CAEEVFSGMIERNLVTWN----------------------------------SLITCYEQ 225

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-KELNHDV 292
           NG   EAL +F+ M +   +EP++V+L SV+  C+SL  L  G QIH   ++  +   D+
Sbjct: 226 NGPASEALEVFVRM-MDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDL 284

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            L NAL+DMY+KC  ++ ARRVF+  S  ++ ++ +S+VSGY        A  +++KM  
Sbjct: 285 VLGNALVDMYAKCSKVNEARRVFDRMSI-RNVVSETSMVSGYARAASVKAARFMFSKM-- 341

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             ++ ++++   +++   ++G   E L ++  ++    I PT
Sbjct: 342 --TQRNVVSWNALIAGYTQNGENEEALRLFR-LLKRESIWPT 380



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 11/162 (6%)

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
           ++D   PN      +L +C       G + +H   +  + + ++ + N LID+Y KC  L
Sbjct: 7   VRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCL 66

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
           D AR++F D    ++  TW+S++S     G   EA  L+  M     +PD  +   ++S 
Sbjct: 67  DDARKLF-DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSM----PEPDQCSWNSMVSG 121

Query: 369 CGRSGLINEGLEIY------NSVINTYRIKPTTEICACVVDM 404
             +     E LE +      + ++N Y        CA ++D+
Sbjct: 122 FAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDL 163


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 170/483 (35%), Positives = 291/483 (60%), Gaps = 6/483 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+Q++  GH  +PF+  +L+ + + C     +  +F    + +VYLY +LI+G+V +  +
Sbjct: 69  HAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNY 128

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            +A++L+S M + ++ PD++ +A+I K  G    L  G  +H  ++K+G   + ++   +
Sbjct: 129 FDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRI 188

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           M +Y KCG+  +   +F+EMP+  V S  V IS ++  G   LV  +  VF +++R++  
Sbjct: 189 MELYGKCGELGDARRVFEEMPEDVVAS-TVMISSYSDQG---LVEEAGAVFSRVRRKDTV 244

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            WTAMI+G+V+N +++ AL  F  MQ  + + PN+ ++V VL  CS L  L  G+ +H +
Sbjct: 245 CWTAMIDGFVRNEEMNRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGRWVHSY 303

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
             + E+  ++ + NALI+MYS+CGS+D A+ VF D   ++D IT+++++SG  ++GK  +
Sbjct: 304 MRKFEIELNLFVGNALINMYSRCGSIDEAQTVF-DEMKDRDVITYNTMISGLSMNGKSRQ 362

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ L+  M+    +P  +T VGVL+AC   GL++ G +I++S+   Y ++P  E   C+V
Sbjct: 363 AIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMV 422

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGR G+L+ A D I+TM + P   + G L+SA  MH N E+ +   K L      +  
Sbjct: 423 DLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSG 482

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            YV LS++YASS +W   A++R  MK+ G++K PGCS I ++ + H F + D  HP    
Sbjct: 483 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKER 542

Query: 523 IYE 525
           IYE
Sbjct: 543 IYE 545



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 146/357 (40%), Gaps = 68/357 (19%)

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
           K +N  + IH   I+ G   D  +   L+    KC        +F      NV  +   I
Sbjct: 60  KHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALI 119

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
            G  SSG++         FD                         A+ L+  M L D I 
Sbjct: 120 DGFVSSGNY---------FD-------------------------AIQLYSRM-LHDSIL 144

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+   + S+L  C S + L  G+++H  A++  L+ +  +   ++++Y KCG L  ARRV
Sbjct: 145 PDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRV 204

Query: 315 FED------------SSFN-----------------KDAITWSSIVSGYGLHGKGHEAVL 345
           FE+            SS++                 KD + W++++ G+  + + + A+ 
Sbjct: 205 FEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALE 264

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
            +  M     +P+  TIV VLSAC + G +  G  ++ S +  + I+    +   +++M 
Sbjct: 265 AFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVH-SYMRKFEIELNLFVGNALINMY 323

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI--QLEPEN 460
            R G +D A      M  +     +  ++S   M+G S      ++ +I  +L P N
Sbjct: 324 SRCGSIDEAQTVFDEMK-DRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTN 379



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 1/149 (0%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L++ +  HS +       N FV   LI  Y+ CG   ++Q VF+ ++ +DV  YN++I+
Sbjct: 293 ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMIS 352

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI-HGLSIKIGFV 153
           G   N    +A+ELF  M    + P + T   +         ++ G  I H ++   G  
Sbjct: 353 GLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVE 412

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEM 182
             +     ++ +  + G+  E  +L   M
Sbjct: 413 PQIEHYGCMVDLLGRVGRLEEAYDLIRTM 441


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 195/568 (34%), Positives = 301/568 (52%), Gaps = 70/568 (12%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           +++A + F  ++S  YT+    H+ ++ ++ + L    Q H+QI+  G   +  + T LI
Sbjct: 34  IATAASEFPSLSSSTYTNYL--HYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSI-THLI 90

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
             Y+L  +   ++ VF+S  +    L+NS+I  Y ++  +NEALE    MYY  V     
Sbjct: 91  NLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALE----MYYCMVE---- 142

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
                                     K G   DV +   L+ MY K G       +FD+M
Sbjct: 143 --------------------------KGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM 176

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P+R+V +WN  I+G + S D  +   +RRVFDQM  ++  +W  M+ GY  NG   E L 
Sbjct: 177 PKRDVVAWNAMIAGLSQSEDPYV---ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 233

Query: 243 LFLEMQLKD--------------------------RIE---PNKVSLVSVLPTCSSLIGL 273
           LF +M+L +                          R+E   PN V+ VSVLP  + L   
Sbjct: 234 LFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAF 293

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             G   H   I+     +  + N+LIDMY+KCG LD + ++F +   +KD ++W++++SG
Sbjct: 294 REGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD-HKDTVSWNAMLSG 352

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y +HG G  A+ L++ M     + D ++ V VLSAC  +GL+ EG +I++S+ + Y IKP
Sbjct: 353 YAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKP 412

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             E  AC+VD+LGRAG  D  L FIK MPVEP   +WGAL+ +  MH N ++ ++A   L
Sbjct: 413 DLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHL 472

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           ++LEP NP+++V LS++YA S RW    + R+ M D GLKK+PGCSW+ +  K H F V 
Sbjct: 473 VKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVG 532

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASP 541
           DK+HP   S++ + + L+  M      P
Sbjct: 533 DKSHPQLESMHLLWNTLLEKMEKIGYVP 560


>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g08510-like [Glycine max]
          Length = 474

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 175/456 (38%), Positives = 264/456 (57%), Gaps = 7/456 (1%)

Query: 86  VYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           ++LYN LI  Y  +  H +    L+S +      P+  T   +      +   ++G ++H
Sbjct: 11  LFLYNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLSSSSLGQMLH 70

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
              IK GF  D+  A +L+ MY K G       LFDEMP R V  WN  ++G A  GD  
Sbjct: 71  THFIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDMD 130

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
             +    +F  M  RNV  WT MI+GY  N   D+AL LFL M+ +  I PN V+LVS+L
Sbjct: 131 GALE---LFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSIL 187

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
           P C++L  L  G+++  +A +     +    NA+++MY KCG +D A RVF +    ++ 
Sbjct: 188 PACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNL 247

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
            +W+S+V G  +HG+  +A+ LY++M+  G+ PD +T VG+L AC + G++ +G  I+ S
Sbjct: 248 CSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIFKS 307

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
              ++ I P  E   C+VD+LGRAGQL  A + I++M ++P   IWGAL+ A   HGN E
Sbjct: 308 KTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGACSFHGNVE 367

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           + ++A +SL  LEP NP NYV LSN+YAS+ +WD VA+LR +MK   + KS G S+I   
Sbjct: 368 LAEIAAESLFVLEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEG 427

Query: 505 GKTHCFSVADKAHPCSVSIYEMLD---DLILIMRGA 537
            + H F V D++HP S  I+ +LD   +++ + R A
Sbjct: 428 AQLHKFIVKDRSHPKSNEIFALLDGVYEMVKLTRSA 463



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 1/109 (0%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L   A   +L++ ++  +     G   N + S  ++  Y  CG+   +  VFN
Sbjct: 180 AVTLVSILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFN 239

Query: 80  SIQH-KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            I   +++  +NS++ G   +    +ALEL+  M     SPDD T   +
Sbjct: 240 EIGSLRNLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGL 288


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/579 (32%), Positives = 300/579 (51%), Gaps = 76/579 (13%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A    +K  K+ H  +L LG  SN  V   LI AY   G    +  +F+ +   DV
Sbjct: 202 LKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDV 261

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NS+ING V N      LE+F  M    V  D  TL ++      I +L++G  +HG 
Sbjct: 262 VSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGF 321

Query: 147 SIKIGFVVDVILANSLMSMYVKCGK-------------------------------FSEC 175
            +K  F  +V+ +N+L+ MY KCG                                +S+ 
Sbjct: 322 GVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDA 381

Query: 176 LNLFDEMPQ--------------------------RNVGSW-------------NVRISG 196
           + LFDEM                            R+V S+             N  I+ 
Sbjct: 382 IGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINM 441

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +A  G    V  +R VF ++  +++ +W  MI GY QN   +EAL LFL+MQ   + +P+
Sbjct: 442 YAKCGS---VEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ--KQFKPD 496

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            +++  VLP C+ L  L  G++IHG  +R+    D+ +  AL+DMY+KCG L  A+ +F 
Sbjct: 497 DITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLF- 555

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D    KD I+W+ +++GYG+HG G+EA+  +N+M   G +PD  +   +L+AC  SGL+N
Sbjct: 556 DMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLN 615

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EG + +NS+ N   ++P  E  ACVVD+L R G L +A  FI++MP++P  +IWG L+S 
Sbjct: 616 EGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 675

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H + ++ +   + + +LEP+N   YV L+N+YA + +W+ V +LR  M+ RG K++P
Sbjct: 676 CRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNP 735

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           GCSWI + GK + F   +  HP +  I  +L  L + M+
Sbjct: 736 GCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQ 774



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 212/433 (48%), Gaps = 41/433 (9%)

Query: 7   RNTFALVT-SRNYTSATVQH--FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
           RN   L+T S++Y      +   LQ+ A  +SL+  K+ HS I+S G   +  +  KL+ 
Sbjct: 78  RNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVF 137

Query: 64  AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
            Y  CG   Q + +F+ I +  V+L+N L++ Y K     E++ LF  M    V  + +T
Sbjct: 138 MYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYT 197

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
              + K    +  +     +HG  +K+GF  +  + NSL++ Y K G      NLFDE+ 
Sbjct: 198 FTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS 257

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
           + +V SWN                                  +MING V NG     L +
Sbjct: 258 EPDVVSWN----------------------------------SMINGCVVNGFSGNGLEI 283

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           F++M +   +E +  +LVSVL  C+++  LS G+ +HGF ++   + +V   N L+DMYS
Sbjct: 284 FIQMLILG-VEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYS 342

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           KCG+L+ A  VF     +   ++W+SI++ Y   G   +A+ L+++M   G +PDI T+ 
Sbjct: 343 KCGNLNGATEVFVKMG-DTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVT 401

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            ++ AC  S  +++G ++++ VI    +     +   +++M  + G ++ A      +PV
Sbjct: 402 SIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV 460

Query: 424 EPSPSIWGALVSA 436
           +   S W  ++  
Sbjct: 461 KDIVS-WNTMIGG 472



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 150/318 (47%), Gaps = 39/318 (12%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   +   A   SL   +  HS ++  G  SN  V+  LI  YA CG   +++LVF+ I
Sbjct: 399 TVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKI 458

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD+  +N++I GY +N   NEALELF +M      PDD T+A +      +  L+ G 
Sbjct: 459 PVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGR 517

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IHG  ++ G+  D+ +A +L+ MY KCG       LFD +P++++ SW           
Sbjct: 518 EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISW----------- 566

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  T MI GY  +G  +EA+  F EM++   IEP++ S  
Sbjct: 567 -----------------------TVMIAGYGMHGFGNEAISTFNEMRIAG-IEPDESSFS 602

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN--ALIDMYSKCGSLDCARRVFEDSS 319
           ++L  CS    L+ G +    ++R E   +  L +   ++D+ ++ G+L  A +  E   
Sbjct: 603 AILNACSHSGLLNEGWKFFN-SMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMP 661

Query: 320 FNKDAITWSSIVSGYGLH 337
              D   W  ++SG  +H
Sbjct: 662 IKPDTTIWGVLLSGCRIH 679



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 179/407 (43%), Gaps = 57/407 (14%)

Query: 52  ISNPFVSTKLITAYA--------LCGQPTQSQLV---------FNSIQHKDVYLYNSLIN 94
           IS+P+ + K  + YA           QP ++ L+         F +  H      N+ IN
Sbjct: 10  ISSPYHTHKTTSNYAKKSHNRFIFFKQPRRTCLLHSTVCVSPSFTNTTHSVTQNQNAKIN 69

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            + +      A+EL +      +  + +   ++ +L  E K L  G  +H + I  G  V
Sbjct: 70  KFCEMGDLRNAIELLTKSKSYELGLNSY--CSVLQLCAEKKSLEDGKRVHSVIISNGISV 127

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D  L   L+ MYV CG                                   +V+ R++FD
Sbjct: 128 DEALGAKLVFMYVNCGD----------------------------------LVQGRKIFD 153

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           ++    V+ W  +++ Y + G+  E++ LF +MQ K  +  N  +   VL   ++L  + 
Sbjct: 154 KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQ-KLGVVGNCYTFTCVLKCFAALGKVK 212

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
             K++HG+ ++     + ++ N+LI  Y K G ++ A  +F++ S   D ++W+S+++G 
Sbjct: 213 ECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGC 271

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            ++G     + ++ +M+ LG + D+ T+V VL AC   G ++ G  ++   +        
Sbjct: 272 VVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKAC-FSEE 330

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
                 ++DM  + G L+ A +    M  + +   W ++++A V  G
Sbjct: 331 VVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSIIAAYVREG 376



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 6/218 (2%)

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           A IN + + GDL  A+ L  + +     E    S  SVL  C+    L  GK++H   I 
Sbjct: 66  AKINKFCEMGDLRNAIELLTKSK---SYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             ++ D +L   L+ MY  CG L   R++F D   N     W+ ++S Y   G   E+V 
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIF-DKIMNDKVFLWNLLMSEYAKIGNFRESVS 181

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           L+ KM  LG   +  T   VL      G + E   ++  V+        T +   ++   
Sbjct: 182 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLK-LGFGSNTAVVNSLIAAY 240

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            + G ++ A +    +  EP    W ++++  V++G S
Sbjct: 241 FKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNGFS 277


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 175/505 (34%), Positives = 279/505 (55%), Gaps = 38/505 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +  H  ++  G   +  VS  LIT YA CG+   ++ VF+ I  KD+  +NS+I+GY K 
Sbjct: 147 RMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKM 206

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               EA+ LF  M  +   P++ +L ++    GE+ DL +G  +    ++    ++  + 
Sbjct: 207 RHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMG 266

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           ++L+ MY KCG                                   +V +RR+FD MK++
Sbjct: 267 SALIHMYGKCGD----------------------------------LVSARRIFDSMKKK 292

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           +   W AMI GY QNG  +EA+ LF +M++     P++++L+ +L  C+S+  L  GKQ+
Sbjct: 293 DKVTWNAMITGYAQNGMSEEAIKLFQDMRMSS-TAPDQITLIGILSACASIGALDLGKQV 351

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
             +A  +    DV +  AL+DMY+KCGSLD A RVF      K+ ++W++++S    HG+
Sbjct: 352 EIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMP-KKNEVSWNAMISALAFHGQ 410

Query: 340 GHEAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
             EA+ L+  M+  G    P+ IT VGVLSAC  +GL++EG  +++ + +++ + P  E 
Sbjct: 411 AQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEH 470

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            +C+VD+  RAG L+ A DF+ TMP +P   I GAL+ A     N ++ +   K L++LE
Sbjct: 471 YSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELE 530

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P N  NYV  S LYA+ RRWD  A +R +MK +G+ K+PGCSWI I+ + H F   D  H
Sbjct: 531 PSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLH 590

Query: 518 PCSVSIYEMLDDLILIMRGAAASPH 542
              + I+++LD LI  +R     P+
Sbjct: 591 QEWIEIHQILDLLIDDLRREGYIPN 615



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A+  +L L KQ        G   + +V T L+  YA CG    +  VF  +
Sbjct: 331 TLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGM 390

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS--NVSPDDFTLATISKLSGEIKDLNV 139
             K+   +N++I+    +    EAL LF +M      VSP+D T   +         ++ 
Sbjct: 391 PKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDE 450

Query: 140 G-MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           G  L H +S   G V  +   + ++ ++ + G   E  +    MP++
Sbjct: 451 GRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEK 497


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 162/430 (37%), Positives = 268/430 (62%), Gaps = 5/430 (1%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M   +V PD FT + + K   ++ D+  G  IHGL  K+GF  ++ L N ++++Y  CG+
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             + + LF++MPQR+  +WN+ I+  A  GD      +   F +M  +NV +WT+MI+G+
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDID---GAYGFFLRMPNKNVRSWTSMISGF 117

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
           VQ G  +EA+ LF++++  + + PN+V++VSVL  C+ L  L  G+ +H ++ +     +
Sbjct: 118 VQCGKPNEAIDLFMKLE-DEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRN 176

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           V +CN LIDMY KCG L+ ARRVF +    +  ++WS++++G  +HG+  EA+ L+++M+
Sbjct: 177 VHVCNTLIDMYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAEEALCLFSEMI 235

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
            LG KP+ +T +G+L AC   GLI+EG   + S+   Y + P  E   CVVD+  RAG L
Sbjct: 236 KLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLL 295

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
           + A +FI +MP++P+  +WGAL+    +H N ++ + A K L +L+P N   YV +SN+Y
Sbjct: 296 EEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIY 355

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           A + RW+  A +R +MKDRG+KK+ G S I+++G  H F   D+ HP +  I ++ D L+
Sbjct: 356 AEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLL 415

Query: 532 LIMRGAAASP 541
           + M+    +P
Sbjct: 416 VKMKRRGYAP 425



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 75/334 (22%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYN--------- 90
           K  H     LG  SN F+   ++  Y LCG+   + L+F  +  +D   +N         
Sbjct: 30  KTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAKR 89

Query: 91  ----------------------SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
                                 S+I+G+V+    NEA++LF  +    V P++ T+ ++ 
Sbjct: 90  GDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVL 149

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
               ++ DL++G ++H  S K GF  +V + N+L+ MYVKCG       +F EM +R V 
Sbjct: 150 AACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVV 209

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           SW                                  +AMI G   +G  +EAL LF EM 
Sbjct: 210 SW----------------------------------SAMIAGLAMHGQAEEALCLFSEM- 234

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYS 303
           +K  ++PN V+ + +L  CS +  +  G++        + +  ++ H       ++D++S
Sbjct: 235 IKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEH----YGCVVDLFS 290

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           + G L+ A           + + W +++ G  +H
Sbjct: 291 RAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVH 324



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 2/179 (1%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
             TV   L   A    L L +  H      G   N  V   LI  Y  CG    ++ VF 
Sbjct: 142 EVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFY 201

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            ++ + V  ++++I G   +    EAL LFS M    V P+  T   +      +  ++ 
Sbjct: 202 EMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDE 261

Query: 140 G-MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG-SWNVRISG 196
           G      ++   G +  +     ++ ++ + G   E       MP +  G  W   + G
Sbjct: 262 GRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGG 320


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 185/534 (34%), Positives = 289/534 (54%), Gaps = 42/534 (7%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
            T   YTS      LQ     ++L   KQ H+Q   LG   N  ++TKL+  YA+     
Sbjct: 45  TTHYGYTS-----LLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLL 99

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            ++ +F+ I  ++++L+N LI GY  N  H+ A+ L+  M    + PD+FTL  + K   
Sbjct: 100 NARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACS 159

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +  +  G  IH   IK G+  D+ +  +L+ MY KCG                      
Sbjct: 160 ALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCG---------------------- 197

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                        V+ + RVFD++  R+   W +M+  Y QNG  DE++ L  EM   + 
Sbjct: 198 ------------CVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMA-ANG 244

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           + P + +LV+V+ + + +  L  G++IHGF  R     +  +  ALIDMY+KCGS+  A 
Sbjct: 245 VRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVAL 304

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
            +FE     K  ++W++I++GY +HG    A+ L++KM     +PD IT VGVL+AC R 
Sbjct: 305 ALFERLR-EKRVVSWNAIITGYAMHGLAVGALDLFDKMR-KEDRPDHITFVGVLAACSRG 362

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
            L++EG  +YN ++  Y I PT +   C++D+LG  GQLD A D I+ M V+P   +WGA
Sbjct: 363 RLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGA 422

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
           L+++  +HGN E+ +LA + LI+LEP++  NYV L+N+YA S +W+ V +LR +M D+ +
Sbjct: 423 LLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRI 482

Query: 493 KKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
           KK+  CSWI +  K + F   D +H  S +IY  L  L  +M  A  +P  G +
Sbjct: 483 KKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSV 536


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 188/506 (37%), Positives = 280/506 (55%), Gaps = 37/506 (7%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           + KQ H Q    G  SN FV   L++ YA  GQ + +++VF+ +  + V  + S+I+GYV
Sbjct: 118 IGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYV 177

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           +N    EAL +F  M   NV PD   L ++      ++DL  G  IHGL  K+G   +  
Sbjct: 178 QNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPD 237

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           +  SL +MY K G                                  LV  +R  F++M+
Sbjct: 238 IVISLTTMYAKRG----------------------------------LVEVARFFFNRME 263

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
           + N+  W AMI+GY  NG  +EA+ LF EM  K+ I  + +++ S +   + +  L   +
Sbjct: 264 KPNLILWNAMISGYANNGYGEEAIKLFREMITKN-IRVDSITMRSAVLASAQVGSLELAR 322

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            + G+  + E   D  +   LIDMY+KCGS+  AR VF D   +KD + WS ++ GYGLH
Sbjct: 323 WLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVF-DRVADKDVVLWSVMIMGYGLH 381

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G G EA+ LYN+M   G  P+  T +G+L+AC  SGL+ EG E+++ ++  + I+P  + 
Sbjct: 382 GHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH-LMPDHGIEPHHQH 440

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            +CVVD+LGRAG L++A DFI +MP++P  S+WGAL+SA  +H    + ++A + L  L+
Sbjct: 441 YSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILD 500

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P N  +YV LSNLYAS+  W  VA +R MM  +GL K  G S I I+G    F V D++H
Sbjct: 501 PYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSH 560

Query: 518 PCSVSIYEMLDDLILIMRGAAASPHL 543
           P S  I+E LD L   ++ A   PH+
Sbjct: 561 PKSKEIFEELDRLEKRLKAAGYVPHM 586



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 202/459 (44%), Gaps = 39/459 (8%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LK   Q + Q++  G     F+  K I A    G    +   F  +   D+ L+N++I G
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 74

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y + +  +  + ++ +M  S V P+ FT   + K  G      +G  IHG + K GF  +
Sbjct: 75  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 134

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V + NSL+SMY K G+ S    +FD++  R V SW   ISG+  +GD    + +  VF +
Sbjct: 135 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD---PMEALNVFKE 191

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M++ NV                                +P+ ++LVSV+   +++  L  
Sbjct: 192 MRQCNV--------------------------------KPDWIALVSVMTAYTNVEDLGQ 219

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK IHG   +  L  +  +  +L  MY+K G ++ AR  F       + I W++++SGY 
Sbjct: 220 GKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISGYA 278

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            +G G EA+ L+ +M+    + D IT+   + A  + G + E     +  I+    +  T
Sbjct: 279 NNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSL-ELARWLDGYISKSEYRDDT 337

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            +   ++DM  + G +  A      +  +    +W  ++    +HG+ +     Y  + Q
Sbjct: 338 FVNTGLIDMYAKCGSIYLARCVFDRV-ADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQ 396

Query: 456 LEP-ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
                N   ++ L     +S       EL  +M D G++
Sbjct: 397 AGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIE 435



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 5/121 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T++  +  SA   SL+L +     I    +  + FV+T LI  YA CG    ++ VF+
Sbjct: 302 SITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFD 361

Query: 80  SIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFT---LATISKLSGEIK 135
            +  KDV L++ +I GY   HGH  EA+ L++ M  + V P+D T   L T  K SG +K
Sbjct: 362 RVADKDVVLWSVMIMGY-GLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVK 420

Query: 136 D 136
           +
Sbjct: 421 E 421


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 179/519 (34%), Positives = 292/519 (56%), Gaps = 36/519 (6%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+V +  ++L   +Q H+ I+  G  S+ FV   LI  YA CG+   ++ VF+ +  ++V
Sbjct: 131 LKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNV 190

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NS+  GY K+    E ++LF  M   ++  D+ TL ++    G + DL +G  I+  
Sbjct: 191 RTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRY 250

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
             + G   +  L  SL+ MY KCG+                                  V
Sbjct: 251 VEEKGLKGNPTLITSLVDMYAKCGQ----------------------------------V 276

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             +RR+FDQM RR+V AW+AMI+GY Q     EAL LF EMQ K  I+PN++++VS+L +
Sbjct: 277 DTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQ-KANIDPNEITMVSILSS 335

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+ L  L  GK +H F  +K +   V+L  AL+D Y+KCGS++ +  VF      K+ ++
Sbjct: 336 CAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPV-KNVLS 394

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+ ++ G   +G+G +A+  +  M+    +P+ +T +GVLSAC  +GL++EG +++ S+ 
Sbjct: 395 WTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMS 454

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             + I+P  E   C+VD+LGRAG ++ A  FIK MP++P+  IW  L+++  +H N E+ 
Sbjct: 455 RDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIG 514

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
           + + K LI LEP +  +Y+ LSN+YAS  RW+   ++R  MK++G+KK+PGCS I + G 
Sbjct: 515 EESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGV 574

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGK 545
            H F   D  H  S  IY  ++D++  ++ A   P+  +
Sbjct: 575 IHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAE 613


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 188/506 (37%), Positives = 280/506 (55%), Gaps = 37/506 (7%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           + KQ H Q    G  SN FV   L++ YA  GQ + +++VF+ +  + V  + S+I+GYV
Sbjct: 103 IGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYV 162

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           +N    EAL +F  M   NV PD   L ++      ++DL  G  IHGL  K+G   +  
Sbjct: 163 QNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPD 222

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           +  SL +MY K G                                  LV  +R  F++M+
Sbjct: 223 IVISLTTMYAKRG----------------------------------LVEVARFFFNRME 248

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
           + N+  W AMI+GY  NG  +EA+ LF EM  K+ I  + +++ S +   + +  L   +
Sbjct: 249 KPNLILWNAMISGYANNGYGEEAIKLFREMITKN-IRVDSITMRSAVLASAQVGSLELAR 307

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            + G+  + E   D  +   LIDMY+KCGS+  AR VF D   +KD + WS ++ GYGLH
Sbjct: 308 WLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVF-DRVADKDVVLWSVMIMGYGLH 366

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G G EA+ LYN+M   G  P+  T +G+L+AC  SGL+ EG E+++ ++  + I+P  + 
Sbjct: 367 GHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH-LMPDHGIEPHHQH 425

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            +CVVD+LGRAG L++A DFI +MP++P  S+WGAL+SA  +H    + ++A + L  L+
Sbjct: 426 YSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILD 485

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P N  +YV LSNLYAS+  W  VA +R MM  +GL K  G S I I+G    F V D++H
Sbjct: 486 PYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSH 545

Query: 518 PCSVSIYEMLDDLILIMRGAAASPHL 543
           P S  I+E LD L   ++ A   PH+
Sbjct: 546 PKSKEIFEELDRLEKRLKAAGYVPHM 571



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 201/458 (43%), Gaps = 39/458 (8%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           K   Q + Q++  G     F+  K I A    G    +   F  +   D+ L+N++I GY
Sbjct: 1   KHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGY 60

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            + +  +  + ++ +M  S V P+ FT   + K  G      +G  IHG + K GF  +V
Sbjct: 61  TQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNV 120

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            + NSL+SMY K G+ S    +FD++  R V SW   ISG+  +GD    + +  VF +M
Sbjct: 121 FVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD---PMEALNVFKEM 177

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           ++ NV                                +P+ ++LVSV+   +++  L  G
Sbjct: 178 RQCNV--------------------------------KPDWIALVSVMTAYTNVEDLGQG 205

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K IHG   +  L  +  +  +L  MY+K G ++ AR  F       + I W++++SGY  
Sbjct: 206 KSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMISGYAN 264

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           +G G EA+ L+ +M+    + D IT+   + A  + G + E     +  I+    +  T 
Sbjct: 265 NGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSL-ELARWLDGYISKSEYRDDTF 323

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           +   ++DM  + G +  A      +  +    +W  ++    +HG+ +     Y  + Q 
Sbjct: 324 VNTGLIDMYAKCGSIYLARCVFDRV-ADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQA 382

Query: 457 EP-ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
               N   ++ L     +S       EL  +M D G++
Sbjct: 383 GVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIE 420



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 5/121 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T++  +  SA   SL+L +     I    +  + FV+T LI  YA CG    ++ VF+
Sbjct: 287 SITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFD 346

Query: 80  SIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFT---LATISKLSGEIK 135
            +  KDV L++ +I GY   HGH  EA+ L++ M  + V P+D T   L T  K SG +K
Sbjct: 347 RVADKDVVLWSVMIMGY-GLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVK 405

Query: 136 D 136
           +
Sbjct: 406 E 406


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 180/502 (35%), Positives = 286/502 (56%), Gaps = 6/502 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           S +L K+ H  IL  G  S+ FV   LIT Y  C +   ++ VF+ +  +D+  +N++I 
Sbjct: 154 SPELAKEVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIG 213

Query: 95  GYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           GY +   ++E   L+  M   S V+P+  T  ++ +  G+  DL  GM +H    + G  
Sbjct: 214 GYSQRRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIE 273

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
           +DV L+N++++MY KCG+      +F+ M +++  ++   ISG+    D+ LV  +  VF
Sbjct: 274 IDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYM---DYGLVDDAMGVF 330

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
             ++   +  W A+I+G VQN   +    L  +MQ    + PN V+L S+LP+ S    L
Sbjct: 331 RGVENPGLNMWNAVISGMVQNKQFEGVFDLVRQMQ-GSGLSPNAVTLASILPSFSYFSNL 389

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
            GGK++HG+AIR+    +V +  ++ID Y K G +  AR VF D S ++  I W+SI+S 
Sbjct: 390 RGGKEVHGYAIRRGYEQNVYVSTSIIDAYGKLGCICGARWVF-DLSQSRSLIIWTSIISA 448

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y  HG    A+ LY +M+  G +PD +T+  VL+AC  SGL++E   I+NS+ + Y I+P
Sbjct: 449 YAAHGDAGLALGLYAQMLDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPSKYGIQP 508

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             E  AC+V +L RAG+L  A+ FI  MP+EPS  +WG L+  + + G+ E+   A   L
Sbjct: 509 LVEHYACMVGVLSRAGKLSEAVQFISEMPIEPSAKVWGPLLHGASVFGDVEIGKFACDHL 568

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
            ++EPEN  NY+ ++NLYA + +W+   E+R  MK  GL+K  G SWI   G    F   
Sbjct: 569 FEIEPENTGNYIIMANLYAHAGKWEQAGEVRERMKVIGLQKIRGSSWIETSGGLLSFIAK 628

Query: 514 DKAHPCSVSIYEMLDDLILIMR 535
           D ++  S  IY +L+ L+ +MR
Sbjct: 629 DVSNGRSDEIYALLEGLLGLMR 650



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 210/452 (46%), Gaps = 72/452 (15%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           LQ  + HR L+  KQ H++++ L    + F+++KLI  Y+       ++ VF++  H++ 
Sbjct: 41  LQHCSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYSKSNHAHFARKVFDTTPHRNT 100

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYS---NVSPDDFTLATISK-LSGEIKDLNVGML 142
           + +N+++ GY  N     AL LF +  +S   N SPD+FT++ + K L+       +   
Sbjct: 101 FTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALASSFCSPELAKE 160

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H L ++ G   D+ + N+L++ Y +C +     ++FD M +R++ +WN  I G++    
Sbjct: 161 VHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYS---- 216

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                  RR++D+ KR                        L+LEM     + PN V+ VS
Sbjct: 217 ------QRRLYDECKR------------------------LYLEMLNVSAVAPNVVTAVS 246

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           V+  C   + L+ G ++H F     +  DVSL NA++ MY+KCG LD AR +FE     K
Sbjct: 247 VMQACGQSMDLAFGMELHRFVKESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMR-EK 305

Query: 323 DAITWSSIVSGYGLHG------------------------------KGHEAVL-LYNKMV 351
           D +T+ +I+SGY  +G                              K  E V  L  +M 
Sbjct: 306 DEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVRQMQ 365

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G  P+ +T+  +L +      +  G E++   I     +    +   ++D  G+ G +
Sbjct: 366 GSGLSPNAVTLASILPSFSYFSNLRGGKEVHGYAIRR-GYEQNVYVSTSIIDAYGKLGCI 424

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
             A  ++  +    S  IW +++SA   HG++
Sbjct: 425 CGA-RWVFDLSQSRSLIIWTSIISAYAAHGDA 455



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 249 LKDRIEPNKVSLV---SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
           L+ R+ P  V      S L  CS    L  GKQ+H   I   +  D  L + LI  YSK 
Sbjct: 23  LRRRLSPPGVDFAAYGSALQHCSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYSKS 82

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM---VCLGSKPDIITI 362
                AR+VF D++ +++  TW++++ GY  +     A+ L+          + PD  TI
Sbjct: 83  NHAHFARKVF-DTTPHRNTFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTI 141

Query: 363 VGVLSACGRS 372
             VL A   S
Sbjct: 142 SCVLKALASS 151


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 173/491 (35%), Positives = 283/491 (57%), Gaps = 37/491 (7%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q ++ I+  G   + FV   L++A+A CG    S+ +F     KDV  + +LING ++N 
Sbjct: 124 QFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNG 183

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILA 159
              EALE F  M  S V  D+ T+ ++   +  ++D+  G  +HG  ++ G V+ DV + 
Sbjct: 184 RAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVG 243

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           ++L+ MY KCG   + +                                  +VF++M  R
Sbjct: 244 SALVDMYSKCGYCDDAV----------------------------------KVFNEMPTR 269

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N+ +W A+I GYVQ     EAL +F EM ++  IEPN+ ++ S L  C+ L  L  G+ +
Sbjct: 270 NLVSWGALIAGYVQCNRYKEALKVFQEMIIEG-IEPNQSTVTSALTACAQLGSLDQGRWL 328

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H +  R +L  +  L  AL+DMYSKCG +D A  VFE     KD   W+++++G  + G 
Sbjct: 329 HEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLP-AKDVYPWTAMINGLAMRGD 387

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
              ++ L+++M+    +P+ +T +GVLSAC   GL++EGLE++  +I  YR++P  +   
Sbjct: 388 ALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYG 447

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VD+LGRAG+L+ A+ FI++MP+EP+P +WGAL S  ++H   E+ +     LI+L+P 
Sbjct: 448 CMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPH 507

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           +   Y+ L+NLY+  ++W+A A +R +MK +G+ KSPGCSWI ++G  H F   DK+H  
Sbjct: 508 HSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNGVIHEFIAFDKSHTE 567

Query: 520 SVSIYEMLDDL 530
           S+++Y ML+ +
Sbjct: 568 SINVYMMLESV 578



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 142/309 (45%), Gaps = 15/309 (4%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +FD++    ++ W  +I G+  +      LV +  ++    I P++ +   +L   S L 
Sbjct: 60  LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVI-PDRHTFPLLLKAFSKLR 118

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
                 Q +   ++  L+ D  + N+L+  ++ CG +DC+RR+F +++  KD ++W++++
Sbjct: 119 N-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETA-KKDVVSWTALI 176

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           +G   +G+  EA+  + +M   G + D +TIV VL A      +  G  ++   + + R+
Sbjct: 177 NGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRV 236

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
                + + +VDM  + G  D A+     MP     S WGAL++  V     +     ++
Sbjct: 237 IWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVS-WGALIAGYVQCNRYKEALKVFQ 295

Query: 452 SLIQLEPENPSNYVSLSNLYASSR-------RWDAVAELRTMMKDRGLKKSPGCSWISIH 504
            +I +E   P+     S L A ++       RW      R+ +   GL    G + + ++
Sbjct: 296 EMI-IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKL---GLNSKLGTALVDMY 351

Query: 505 GKTHCFSVA 513
            K  C   A
Sbjct: 352 SKCGCVDEA 360


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 181/489 (37%), Positives = 279/489 (57%), Gaps = 5/489 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+Q + LG   +  V   ++TAY  C     ++ VF+ I  + +  +NS+I GY K    
Sbjct: 160 HAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFC 219

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           +EA+ LF  M    V  D FTL ++   S +  +L++G  +H   +  G  +D I+ N+L
Sbjct: 220 DEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNAL 279

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + MY KCG      ++FD+M  ++V SW   ++ +A+ G   LV  + ++F+ M  +NV 
Sbjct: 280 IDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQG---LVENAVQIFNHMPVKNVV 336

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +W ++I   VQ G   EA+ LF  M +   + P+  +LVS+L  CS+   L+ GKQ H +
Sbjct: 337 SWNSIICCLVQEGQYTEAVELFHRMCISG-VMPDDATLVSILSCCSNTGDLALGKQAHCY 395

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
                +   V+LCN+LIDMY+KCG+L  A  +F      K+ ++W+ I+    LHG G E
Sbjct: 396 ICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMP-EKNVVSWNVIIGALALHGFGEE 454

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ ++  M   G  PD IT  G+LSAC  SGL++ G   ++ +I+T+RI P  E  AC+V
Sbjct: 455 AIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMV 514

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGR G L  A+  I+ MPV+P   +WGAL+ A  ++GN E+     K L++L   N  
Sbjct: 515 DLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSG 574

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            YV LSN+Y+ S+RWD + ++R +M D G+KK    S+I I G  + F V DK H  S  
Sbjct: 575 LYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEIDGCCYQFMVDDKRHCASTG 634

Query: 523 IYEMLDDLI 531
           IY +LD L+
Sbjct: 635 IYSILDQLM 643



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 210/469 (44%), Gaps = 72/469 (15%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ 75
           ++ T  T+ H L   ++ + LKL    H+QI+  G  +      KL++     G    + 
Sbjct: 35  KSPTHQTLHHLLDQCSSMKRLKLV---HAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAH 91

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
           L+F+ I   + ++YN LI GY  ++   ++L LF  M  +   P+ FT   + K      
Sbjct: 92  LLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKP 151

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
                +++H  +IK+G      + N++++ YV C        +FD++  R + SWN    
Sbjct: 152 FYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWN---- 207

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                                         +MI GY + G  DEA++LF EM L+  +E 
Sbjct: 208 ------------------------------SMIAGYSKMGFCDEAILLFQEM-LQLGVEA 236

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           +  +LVS+L   S    L  G+ +H + +   +  D  + NALIDMY+KCG L  A+ VF
Sbjct: 237 DVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVF 296

Query: 316 EDSSFNKDAITWSSIVSGY---GL----------------------------HGKGHEAV 344
            D   +KD ++W+S+V+ Y   GL                             G+  EAV
Sbjct: 297 -DQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAV 355

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+++M   G  PD  T+V +LS C  +G +  G + +  + +   I  +  +C  ++DM
Sbjct: 356 ELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNI-ITVSVTLCNSLIDM 414

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             + G L  A+D    MP E +   W  ++ A  +HG  E     +KS+
Sbjct: 415 YAKCGALQTAIDIFFGMP-EKNVVSWNVIIGALALHGFGEEAIEMFKSM 462



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 144/369 (39%), Gaps = 75/369 (20%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L  S+ H +L L +  H  I+  G   +  V+  LI  YA CG    ++ VF+ +
Sbjct: 240 TLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQM 299

Query: 82  QHKDVYLYNSLINGY-------------------------------VKNHGHNEALELFS 110
             KDV  + S++N Y                               V+   + EA+ELF 
Sbjct: 300 LDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFH 359

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M  S V PDD TL +I        DL +G   H         V V L NSL+ MY KCG
Sbjct: 360 RMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCG 419

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
                +++F  MP++NV SWNV                                  +I  
Sbjct: 420 ALQTAIDIFFGMPEKNVVSWNV----------------------------------IIGA 445

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK-----QIHGFAIR 285
              +G  +EA+ +F  MQ    + P++++   +L  CS    +  G+      I  F I 
Sbjct: 446 LALHGFGEEAIEMFKSMQ-ASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRIS 504

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             + H       ++D+  + G L  A  + +      D + W +++    ++G    A  
Sbjct: 505 PGVEHYA----CMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQ 560

Query: 346 LYNKMVCLG 354
           +  +++ LG
Sbjct: 561 IMKQLLELG 569


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/541 (34%), Positives = 294/541 (54%), Gaps = 42/541 (7%)

Query: 35   SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
            S KL +  H  ++ +G   N  V  +L+  Y   G+   ++ VF  +  +    +N++++
Sbjct: 988  SRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVS 1047

Query: 95   GYVKN---HG--------------------------------HNEALELFSNMYYSNVSP 119
            GY  N   HG                                H E +ELF  M    +  
Sbjct: 1048 GYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGA 1107

Query: 120  DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
                LA +  +S ++   + G +IHG  +K GF   + + NSL+ +Y K G  +    LF
Sbjct: 1108 TAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILF 1167

Query: 180  DEMPQRNVGSWNVRISGHASSG----DFSLVVRSRRVFD-QMKRRNVYAWTAMINGYVQN 234
             E+  +N+ SWN  IS +A  G     F++ ++  +  +  M R NV +W+A+I G+   
Sbjct: 1168 LEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASK 1227

Query: 235  GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
            G  +EAL LF  MQL  +++ N V++ SVL  C+ L  L  G++IHG  +R  ++ ++ +
Sbjct: 1228 GQGEEALELFRRMQLA-KVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILV 1286

Query: 295  CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
             N LI+MY+K GS      VFE    NKD I+W+++V+GYG+HG G  A+  +++M+  G
Sbjct: 1287 GNGLINMYTKSGSFKEGNLVFEKIE-NKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDG 1345

Query: 355  SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
             +PD +T V VLSAC  +GL+ EG E+++ +I  +R++P  E  AC+VD+LGRAG L  A
Sbjct: 1346 FEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEA 1405

Query: 415  LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
               +K+MPVEP+  +WGAL+++  MH N+E+ +     +  L  E   +Y+ LSN+YA+S
Sbjct: 1406 SKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAAS 1465

Query: 475  RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
             RW+  A++R   K +GLKK+PG SWI +  K + FS  +  H     +Y +L DL L M
Sbjct: 1466 GRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQM 1525

Query: 535  R 535
             
Sbjct: 1526 E 1526



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 224/488 (45%), Gaps = 57/488 (11%)

Query: 28   QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF--NSIQ-HK 84
            Q S +H    L++Q HSQI+  G   + F++ ++++ YA  G  + +Q VF  + I+   
Sbjct: 881  QCSKSH----LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFS 936

Query: 85   DVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
            ++ L+NS++   V  HG+  EALE++  M    VS D FT   + +    +    +   +
Sbjct: 937  NLLLWNSILRANVA-HGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSV 995

Query: 144  HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
            HG  +++GF  ++ + N LM MY K G+  +   +F+ M  R+  SWN  +SG+A + D 
Sbjct: 996  HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDC 1055

Query: 204  SLVVRSRRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                   R+        N+  WT++++ + + G   E + LF  M+++  I     +L  
Sbjct: 1056 HGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRG-IGATAEALAV 1114

Query: 263  VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------ 316
            VL     L     GK IHG+ ++    + + + N+LI +Y K G+++ AR +F       
Sbjct: 1115 VLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKN 1174

Query: 317  -----------------DSSF---------------NKDAITWSSIVSGYGLHGKGHEAV 344
                             D +F                 + ++WS+++ G+   G+G EA+
Sbjct: 1175 IVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEAL 1234

Query: 345  LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
             L+ +M     K + +TI  VLS C     ++ G EI+  V+ +  +     +   +++M
Sbjct: 1235 ELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL-MDGNILVGNGLINM 1293

Query: 405  LGRAGQLDRA-LDFIKTMPVEPSPSI-WGALVSASVMHGNSEMQDLAYKSLIQ--LEPEN 460
              ++G      L F K   +E    I W  +V+   +HG  E     +  +I+   EP+ 
Sbjct: 1294 YTKSGSFKEGNLVFEK---IENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 1350

Query: 461  PSNYVSLS 468
             +    LS
Sbjct: 1351 VTFVAVLS 1358



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 20   SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            S T+   L V A   +L L ++ H  ++      N  V   LI  Y   G   +  LVF 
Sbjct: 1249 SVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFE 1308

Query: 80   SIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATI 127
             I++KD+  +N+++ GY   HG  E A+  F  M      PD  T   +
Sbjct: 1309 KIENKDLISWNTMVAGY-GIHGLGENAIRTFDQMIKDGFEPDGVTFVAV 1356


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 186/557 (33%), Positives = 299/557 (53%), Gaps = 42/557 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           ++  A   S KL +  H  ++ +G   N  V  +L+  Y   G+   ++ VF  +  +  
Sbjct: 142 IRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSC 201

Query: 87  YLYNSLINGYVKN---HG--------------------------------HNEALELFSN 111
             +N++++GY  N   HG                                H E +ELF  
Sbjct: 202 VSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGR 261

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    +      LA +  +S ++   + G +IHG  +K GF   + + NSL+ +Y K G 
Sbjct: 262 MRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGN 321

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSG----DFSLVVRSRRVFD-QMKRRNVYAWTA 226
            +    LF E+  +N+ SWN  IS +A  G     F++ ++  +  +  M R NV +W+A
Sbjct: 322 VNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSA 381

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           +I G+   G  +EAL LF  MQL  +++ N V++ SVL  C+ L  L  G++IHG  +R 
Sbjct: 382 VIGGFASKGQGEEALELFRRMQLA-KVKANSVTIASVLSVCAELAALHLGREIHGHVVRS 440

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
            ++ ++ + N LI+MY+K GS      VFE    NKD I+W+++V+GYG+HG G  A+  
Sbjct: 441 LMDGNILVGNGLINMYTKSGSFKEGNLVFEKIE-NKDLISWNTMVAGYGIHGLGENAIRT 499

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           +++M+  G +PD +T V VLSAC  +GL+ EG E+++ +I  +R++P  E  AC+VD+LG
Sbjct: 500 FDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLG 559

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466
           RAG L  A   +K+MPVEP+  +WGAL+++  MH N+E+ +     +  L  E   +Y+ 
Sbjct: 560 RAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYML 619

Query: 467 LSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEM 526
           LSN+YA+S RW+  A++R   K +GLKK+PG SWI +  K + FS  +  H     +Y +
Sbjct: 620 LSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRI 679

Query: 527 LDDLILIMRGAAASPHL 543
           L DL L M      P +
Sbjct: 680 LKDLGLQMEVEGYIPDI 696



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 224/488 (45%), Gaps = 57/488 (11%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF--NSIQ-HK 84
           Q S +H    L++Q HSQI+  G   + F++ ++++ YA  G  + +Q VF  + I+   
Sbjct: 43  QCSKSH----LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFS 98

Query: 85  DVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           ++ L+NS++   V  HG+  EALE++  M    VS D FT   + +    +    +   +
Sbjct: 99  NLLLWNSILRANVA-HGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSV 157

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HG  +++GF  ++ + N LM MY K G+  +   +F+ M  R+  SWN  +SG+A + D 
Sbjct: 158 HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDC 217

Query: 204 SLVVRSRRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                  R+        N+  WT++++ + + G   E + LF  M+++  I     +L  
Sbjct: 218 HGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRG-IGATAEALAV 276

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------ 316
           VL     L     GK IHG+ ++    + + + N+LI +Y K G+++ AR +F       
Sbjct: 277 VLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKN 336

Query: 317 -----------------DSSF---------------NKDAITWSSIVSGYGLHGKGHEAV 344
                            D +F                 + ++WS+++ G+   G+G EA+
Sbjct: 337 IVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEAL 396

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+ +M     K + +TI  VLS C     ++ G EI+  V+ +  +     +   +++M
Sbjct: 397 ELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL-MDGNILVGNGLINM 455

Query: 405 LGRAGQLDRA-LDFIKTMPVEPSPSI-WGALVSASVMHGNSEMQDLAYKSLIQ--LEPEN 460
             ++G      L F K   +E    I W  +V+   +HG  E     +  +I+   EP+ 
Sbjct: 456 YTKSGSFKEGNLVFEK---IENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 512

Query: 461 PSNYVSLS 468
            +    LS
Sbjct: 513 VTFVAVLS 520



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L V A   +L L ++ H  ++      N  V   LI  Y   G   +  LVF 
Sbjct: 411 SVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFE 470

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATI 127
            I++KD+  +N+++ GY   HG  E A+  F  M      PD  T   +
Sbjct: 471 KIENKDLISWNTMVAGY-GIHGLGENAIRTFDQMIKDGFEPDGVTFVAV 518


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 178/519 (34%), Positives = 282/519 (54%), Gaps = 37/519 (7%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            LQ     ++++  KQ H++I  +G   NP ++TKL+  Y +C   T + L+F+ I  ++
Sbjct: 7   LLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRN 66

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           ++L+N +I GY  N  +  A+ L+  M    + PD FT   + K    +  +  G  IH 
Sbjct: 67  LFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHK 126

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             I+ G   DV +  +L+ MY KCG                                   
Sbjct: 127 DVIRSGLESDVFVGAALIDMYAKCG----------------------------------C 152

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  +R+VFD++  R+V  W +M+  Y QNG  DE+L L   M   + ++P + + V  + 
Sbjct: 153 VESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAF-NGLKPTEGTFVISIA 211

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
             +    L  GK++HG++ R     +  +  AL+DMY+K GS++ AR +FE     K  +
Sbjct: 212 ASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLE-EKRVV 270

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W+++++GY +HG  +EA+ L+ +M      PD IT VGVL+AC   GL+NEG   + S+
Sbjct: 271 SWNAMITGYAMHGHANEALDLFKEMKG-KVLPDHITFVGVLAACSHGGLLNEGKMHFRSM 329

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           I+ + I PT +   C++D+LG  G+L+ A   I  M VEP   +WGAL+ +  +HGN EM
Sbjct: 330 ISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEM 389

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            +LA + L++LEP++  NYV LSN+YA + +WD VA LR +M ++GLKKS  CSWI +  
Sbjct: 390 GELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGN 449

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
           K H F   D +HP S +IY  L     +M+ A  +P +G
Sbjct: 450 KVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVG 488



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 148/342 (43%), Gaps = 47/342 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  +   +++  K+ H  ++  G  S+ FV   LI  YA CG    ++ VF+ I
Sbjct: 104 TFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKI 163

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +DV  +NS++  Y +N   +E+L L   M ++ + P + T       S +   L  G 
Sbjct: 164 DERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGK 223

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HG S + GF  +  +  +LM MY K G  +   +LF+ + ++ V SWN  I+      
Sbjct: 224 ELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMIT------ 277

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                       GY  +G  +EAL LF EM  K ++ P+ ++ V
Sbjct: 278 ----------------------------GYAMHGHANEALDLFKEM--KGKVLPDHITFV 307

Query: 262 SVLPTCSSLIGLSGGK-----QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            VL  CS    L+ GK      I  F I   + H       +ID+   CG L+ A ++  
Sbjct: 308 GVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQH----YTCMIDLLGHCGRLEEAYKLIM 363

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           +     DA  W +++    +HG      L   K+V L  +PD
Sbjct: 364 EMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVEL--EPD 403



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 4/213 (1%)

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L +C     +  GKQ+H    +  ++ +  L   L+++Y  C SL  A  +F+  S  
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS-K 64

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           ++   W+ ++ GY  +G    A+ LY +M   G  PD  T   VL AC     + EG +I
Sbjct: 65  RNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKI 124

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  VI +  ++    + A ++DM  + G ++ A      +  E     W ++++    +G
Sbjct: 125 HKDVIRS-GLESDVFVGAALIDMYAKCGCVESARQVFDKID-ERDVVCWNSMLATYSQNG 182

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
             + + LA   ++      P+    + ++ AS+
Sbjct: 183 QPD-ESLALCRVMAFNGLKPTEGTFVISIAASA 214



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 12/196 (6%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T    +  SA +  L   K+ H      G  SN  V T L+  YA  G    ++ +F
Sbjct: 202 TEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLF 261

Query: 79  NSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
             ++ K V  +N++I GY   HGH NEAL+LF  M    V PD  T   +         L
Sbjct: 262 ELLEEKRVVSWNAMITGYAM-HGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLL 319

Query: 138 NVGMLIHGLSIKIGFVV--DVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNV-- 192
           N G + H  S+   F +   V     ++ +   CG+  E   L  EM  + + G W    
Sbjct: 320 NEGKM-HFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALL 378

Query: 193 ---RISGHASSGDFSL 205
              +I G+   G+ +L
Sbjct: 379 HSCKIHGNVEMGELAL 394


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 179/485 (36%), Positives = 270/485 (55%), Gaps = 14/485 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS------QLVFNSIQHKDVYLYNSLI 93
           KQ H+++L  G I + +  TK ++    C   T S      Q+VF+     D +L+N +I
Sbjct: 60  KQIHARMLKTGLIQDSYAITKFLSC---CISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 116

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            G+  +     +L L+  M   +   + +T  ++ K    +  L     IH    K+G+ 
Sbjct: 117 RGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYE 176

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV   NSL++ Y   G F     LFD +P+ +  SWN  I G+A +G   + +    +F
Sbjct: 177 NDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALT---LF 233

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
            +M  +N  +WT MI+GYVQ G   EAL LF EMQ  D +EP+ VSL + L  C+ L  L
Sbjct: 234 RKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSD-VEPDNVSLANALSACAQLGAL 292

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GK IH +  +  +  D  L   LIDMY+KCG +  A  VF++    K    W++++SG
Sbjct: 293 EQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQ-RKSVQAWTALISG 351

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y  HG G EA+  + +M  +G KP++IT   VL+AC  +GL+ EG  I+ ++   Y +KP
Sbjct: 352 YAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKP 411

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
           T E   CVVD+L RAG LD A  FI+ MP++P+  IWGAL+ A  +H N E+ +   + L
Sbjct: 412 TIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEIL 471

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           I ++P +   YV  +N++A  ++WD  AE R +MK++G+ K PGCS IS+ G TH F   
Sbjct: 472 IAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAG 531

Query: 514 DKAHP 518
           D++HP
Sbjct: 532 DRSHP 536



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 150/359 (41%), Gaps = 69/359 (19%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L  S  + + T    L+  +   +L+ T Q H+QI  LG+ ++ +    LI +YA  G  
Sbjct: 136 LCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNF 195

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHG------------------------------ 101
             + L+F+ I   D   +NS+I GY K                                 
Sbjct: 196 KLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAG 255

Query: 102 -HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
            H EAL+LF  M  S+V PD+ +LA       ++  L  G  IH    K    +D +L  
Sbjct: 256 MHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGC 315

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
            L+ MY KCG   E L +F  + +++V +W   IS                         
Sbjct: 316 VLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALIS------------------------- 350

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
                    GY  +G   EA+  F+EMQ K  I+PN ++  +VL  CS    +  GK I 
Sbjct: 351 ---------GYAYHGHGREAISKFMEMQ-KMGIKPNVITFTTVLTACSYTGLVEEGKLIF 400

Query: 281 GFAIRKELNHDVSL--CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            + + ++ N   ++     ++D+ S+ G LD A+R  ++     +A+ W +++    +H
Sbjct: 401 -YNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH 458


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 186/557 (33%), Positives = 299/557 (53%), Gaps = 42/557 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           ++  A   S KL +  H  ++ +G   N  V  +L+  Y   G+   ++ VF  +  +  
Sbjct: 142 IRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSC 201

Query: 87  YLYNSLINGYVKN---HG--------------------------------HNEALELFSN 111
             +N++++GY  N   HG                                H E +ELF  
Sbjct: 202 VSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGR 261

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    +      LA +  +S ++   + G +IHG  +K GF   + + NSL+ +Y K G 
Sbjct: 262 MRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGN 321

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSG----DFSLVVRSRRVFD-QMKRRNVYAWTA 226
            +    LF E+  +N+ SWN  IS +A  G     F++ ++  +  +  M R NV +W+A
Sbjct: 322 VNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSA 381

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           +I G+   G  +EAL LF  MQL  +++ N V++ SVL  C+ L  L  G++IHG  +R 
Sbjct: 382 VIGGFASKGQGEEALELFRRMQLA-KVKANSVTIASVLSVCAELAALHLGREIHGHVVRS 440

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
            ++ ++ + N LI+MY+K GS      VFE    NKD I+W+++V+GYG+HG G  A+  
Sbjct: 441 LMDGNILVGNGLINMYTKSGSFKEGNLVFEKIE-NKDLISWNTMVAGYGIHGLGENAIRT 499

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           +++M+  G +PD +T V VLSAC  +GL+ EG E+++ +I  +R++P  E  AC+VD+LG
Sbjct: 500 FDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLG 559

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466
           RAG L  A   +K+MPVEP+  +WGAL+++  MH N+E+ +     +  L  E   +Y+ 
Sbjct: 560 RAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYML 619

Query: 467 LSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEM 526
           LSN+YA+S RW+  A++R   K +GLKK+PG SWI +  K + FS  +  H     +Y +
Sbjct: 620 LSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRI 679

Query: 527 LDDLILIMRGAAASPHL 543
           L DL L M      P +
Sbjct: 680 LKDLGLQMEVEGYIPDI 696



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 224/488 (45%), Gaps = 57/488 (11%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF--NSIQ-HK 84
           Q S +H    L++Q HSQI+  G   + F++ ++++ YA  G  + +Q VF  + I+   
Sbjct: 43  QCSKSH----LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFS 98

Query: 85  DVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           ++ L+NS++   V  HG+  EALE++  M    VS D FT   + +    +    +   +
Sbjct: 99  NLLLWNSILRANVA-HGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSV 157

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HG  +++GF  ++ + N LM MY K G+  +   +F+ M  R+  SWN  +SG+A + D 
Sbjct: 158 HGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDC 217

Query: 204 SLVVRSRRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                  R+        N+  WT++++ + + G   E + LF  M+++  I     +L  
Sbjct: 218 HGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRG-IGATAEALAV 276

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------ 316
           VL     L     GK IHG+ ++    + + + N+LI +Y K G+++ AR +F       
Sbjct: 277 VLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKN 336

Query: 317 -----------------DSSF---------------NKDAITWSSIVSGYGLHGKGHEAV 344
                            D +F                 + ++WS+++ G+   G+G EA+
Sbjct: 337 IVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEAL 396

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+ +M     K + +TI  VLS C     ++ G EI+  V+ +  +     +   +++M
Sbjct: 397 ELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSL-MDGNILVGNGLINM 455

Query: 405 LGRAGQLDRA-LDFIKTMPVEPSPSI-WGALVSASVMHGNSEMQDLAYKSLIQ--LEPEN 460
             ++G      L F K   +E    I W  +V+   +HG  E     +  +I+   EP+ 
Sbjct: 456 YTKSGSFKEGNLVFEK---IENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 512

Query: 461 PSNYVSLS 468
            +    LS
Sbjct: 513 VTFVAVLS 520



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L V A   +L L ++ H  ++      N  V   LI  Y   G   +  LVF 
Sbjct: 411 SVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFE 470

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATI 127
            I++KD+  +N+++ GY   HG  E A+  F  M      PD  T   +
Sbjct: 471 KIENKDLISWNTMVAGY-GIHGLGENAIRTFDQMIKDGFEPDGVTFVAV 518


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 296/559 (52%), Gaps = 38/559 (6%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ-------- 70
           T  T+ + L   A  ++  + ++ HS ++ LG  S   V+  ++  Y  CG         
Sbjct: 163 TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 222

Query: 71  ---PTQS--------------------QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
              P +S                    + +F S+  + +  +N++I GY +N    +AL+
Sbjct: 223 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALK 282

Query: 108 LFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
           LFS M + S+++PD+FT+ ++      + ++ +G  +H   ++     +  + N+L+S Y
Sbjct: 283 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTY 342

Query: 167 VKCGKFSECLNLFDEMPQR--NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
            K G       + D+  +   NV S+   + G+   GD      +R +F  M  R+V AW
Sbjct: 343 AKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME---SAREMFGVMNNRDVVAW 399

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           TAMI GY QNG  DEA+ LF  M +    EPN  +L +VL  C+SL  L  GKQIH  AI
Sbjct: 400 TAMIVGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAI 458

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R  L    S+ NA+I MY++ GS   ARR+F+   + K+ ITW+S++     HG+G EAV
Sbjct: 459 RSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAV 518

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+ +M+  G +PD IT VGVLSAC  +G +NEG   Y+ + N ++I P     AC+VD+
Sbjct: 519 GLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDL 578

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           L RAG    A +FI+ MPVEP    WG+L+SA  +H N+E+ +LA + L+ ++P N   Y
Sbjct: 579 LARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAY 638

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
            +++N+Y++  RW   A +    K++ ++K  G SW  I  K H F   D  HP   ++Y
Sbjct: 639 SAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVY 698

Query: 525 EMLDDLILIMRGAAASPHL 543
            M   +   ++GA   P L
Sbjct: 699 AMAARMWEEIKGAGFVPDL 717



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 211/440 (47%), Gaps = 38/440 (8%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    L++ +A  G+   ++ VF  +  +D   +  ++ G  +     EA++   +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
               +P  FTL  +       +   VG  +H   +K+G    V +ANS+++MY KCG   
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
               +F+ MP R+V SWN  +S +   G   L   +  +F+ M  R++ +W AMI GY Q
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHLGRMDL---AESLFESMPDRSIVSWNAMIAGYNQ 273

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           NG   +AL LF  M  +  + P++ ++ SVL  C++L  +  GKQ+H + +R E+ ++  
Sbjct: 274 NGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQ 333

Query: 294 LCNALIDMYSKCGSLDCARRVFEDS--------SF------------------------N 321
           + NALI  Y+K GS++ ARR+ + S        SF                        N
Sbjct: 334 VTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNN 393

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D + W++++ GY  +G+  EA+ L+  M+  G +P+  T+  VLS C     ++ G +I
Sbjct: 394 RDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQI 453

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +   I +  ++ ++ +   ++ M  R+G    A      +        W +++ A   HG
Sbjct: 454 HCRAIRSL-LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 442 NSEMQDLAYKSLIQ--LEPE 459
             E     ++ +++  +EP+
Sbjct: 513 QGEEAVGLFEEMLRAGVEPD 532



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 168/344 (48%), Gaps = 43/344 (12%)

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVK----CGKFSECLNLFDEMP--QRNVGSWNV 192
            G  IH  ++K G +    L N+L+S Y +     G   +   LFDE+P  +RNV +WN 
Sbjct: 44  AGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNS 103

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            +S  A SG  +    +R VF +M  R+  +WT M+ G  + G   EA+   L+M   D 
Sbjct: 104 LLSMFAKSGRLA---DARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT-ADG 159

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
             P + +L +VL +C+     + G+++H F ++  L   V + N++++MY KCG  + A 
Sbjct: 160 FTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETAT 219

Query: 313 RVFED------SSFN------------------------KDAITWSSIVSGYGLHGKGHE 342
            VFE       SS+N                        +  ++W+++++GY  +G   +
Sbjct: 220 TVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAK 279

Query: 343 AVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           A+ L+++M+   S  PD  TI  VLSAC   G +  G +++  ++ T  +   +++   +
Sbjct: 280 ALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT-EMAYNSQVTNAL 338

Query: 402 VDMLGRAGQLDRALDFI-KTMPVEPSPSIWGALVSASVMHGNSE 444
           +    ++G ++ A   + ++M  + +   + AL+   V  G+ E
Sbjct: 339 ISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 38/227 (16%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK----CGSLDCARRVFED- 317
           +L  C +      G+ IH  A++  L     LCN L+  Y +     G L  ARR+F++ 
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 318 --------------SSFNK-----------------DAITWSSIVSGYGLHGKGHEAVLL 346
                         S F K                 DA++W+ +V G    G+  EA+  
Sbjct: 92  PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
              M   G  P   T+  VLS+C  +     G ++++ V+    +     +   V++M G
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVK-LGLGSCVPVANSVLNMYG 210

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
           + G  + A    + MPV  S S W A+VS +   G  ++ +  ++S+
Sbjct: 211 KCGDSETATTVFERMPVR-SVSSWNAMVSLNTHLGRMDLAESLFESM 256


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 296/559 (52%), Gaps = 38/559 (6%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ-------- 70
           T  T+ + L   A  ++  + ++ HS ++ LG  S   V+  ++  Y  CG         
Sbjct: 57  TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 116

Query: 71  ---PTQS--------------------QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
              P +S                    + +F S+  + +  +N++I GY +N    +AL+
Sbjct: 117 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALK 176

Query: 108 LFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
           LFS M + S+++PD+FT+ ++      + ++ +G  +H   ++     +  + N+L+S Y
Sbjct: 177 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTY 236

Query: 167 VKCGKFSECLNLFDEMPQR--NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
            K G       + D+  +   NV S+   + G+   GD      +R +F  M  R+V AW
Sbjct: 237 AKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME---SAREMFGVMNNRDVVAW 293

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           TAMI GY QNG  DEA+ LF  M +    EPN  +L +VL  C+SL  L  GKQIH  AI
Sbjct: 294 TAMIVGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAI 352

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R  L    S+ NA+I MY++ GS   ARR+F+   + K+ ITW+S++     HG+G EAV
Sbjct: 353 RSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAV 412

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+ +M+  G +PD IT VGVLSAC  +G +NEG   Y+ + N ++I P     AC+VD+
Sbjct: 413 GLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDL 472

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           L RAG    A +FI+ MPVEP    WG+L+SA  +H N+E+ +LA + L+ ++P N   Y
Sbjct: 473 LARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAY 532

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
            +++N+Y++  RW   A +    K++ ++K  G SW  I  K H F   D  HP   ++Y
Sbjct: 533 SAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVY 592

Query: 525 EMLDDLILIMRGAAASPHL 543
            M   +   ++GA   P L
Sbjct: 593 AMAARMWEEIKGAGFVPDL 611



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 206/429 (48%), Gaps = 38/429 (8%)

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           +A  G+   ++ VF  +  +D   +  ++ G  +     EA++   +M     +P  FTL
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
             +       +   VG  +H   +K+G    V +ANS+++MY KCG       +F+ MP 
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           R+V SWN  +S +   G   L   +  +F+ M  R++ +W AMI GY QNG   +AL LF
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDL---AESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 178

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
             M  +  + P++ ++ SVL  C++L  +  GKQ+H + +R E+ ++  + NALI  Y+K
Sbjct: 179 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 238

Query: 305 CGSLDCARRVFEDS--------SF------------------------NKDAITWSSIVS 332
            GS++ ARR+ + S        SF                        N+D + W++++ 
Sbjct: 239 SGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 298

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           GY  +G+  EA+ L+  M+  G +P+  T+  VLS C     ++ G +I+   I +  ++
Sbjct: 299 GYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL-LE 357

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
            ++ +   ++ M  R+G    A      +        W +++ A   HG  E     ++ 
Sbjct: 358 QSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEE 417

Query: 453 LIQ--LEPE 459
           +++  +EP+
Sbjct: 418 MLRAGVEPD 426


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 284/545 (52%), Gaps = 67/545 (12%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYA---------- 66
           N    T    L + +  R + L +Q + QIL  G  S+ FV + L+  Y           
Sbjct: 135 NLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKR 194

Query: 67  ---------------------LCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA 105
                                 CG   +SQ +F  ++ +D   +  +I G ++N    EA
Sbjct: 195 YFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREA 254

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           L++F  M  +  + D FT  ++    G +  L  G  IH   I+     +V + ++L+ M
Sbjct: 255 LDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDM 314

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y KC        +F  MPQ+                                  NV +WT
Sbjct: 315 YSKCRSIKSAETVFKRMPQK----------------------------------NVISWT 340

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           AM+ GY QNG  +EA+ +F EMQ ++ +EP+  +L SV+ +C++L  L  G Q H  A+ 
Sbjct: 341 AMLVGYGQNGFSEEAVKIFFEMQ-RNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALV 399

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             L   +++ NALI +Y KCGS + + R+F + +  +D ++W+++++GY   GK +E + 
Sbjct: 400 SGLISFITVSNALITLYGKCGSTENSHRLFTEMNI-RDEVSWTALLAGYAQFGKANETIG 458

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           L+ +M+  G KPD +T +GVLSAC R+GL+ +GL+ + S+I  + I P  + C C++D+L
Sbjct: 459 LFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLL 518

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
           GRAG+L+ A +FI  MP  P    W  L+S+  +HG+ E+   A  SLI LEP+NP++YV
Sbjct: 519 GRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYV 578

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYE 525
            LS+LYAS  +WD VA+LR  M+D+ ++K PG SWI   GK H FS  D++ P    IY 
Sbjct: 579 LLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYA 638

Query: 526 MLDDL 530
            L+ L
Sbjct: 639 ELEKL 643



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 228/447 (51%), Gaps = 12/447 (2%)

Query: 51  HISNP--FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALEL 108
           HI  P  F    +++ Y+  G  +Q Q +FN +  +D   +N  I+GY      ++A+ +
Sbjct: 65  HIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRV 124

Query: 109 FSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           +  M   + ++ +  T +T+  L  + + +++G  I+G  +K GF  DV + + L+ MY 
Sbjct: 125 YKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYT 184

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           K G   +    FDEMP+RNV   N  I+G    G   ++  S+R+F  +K R+  +WT M
Sbjct: 185 KLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCG---MIEESQRLFCGLKERDSISWTIM 241

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I G +QNG   EAL +F EM+L      ++ +  SVL  C SL+ L  GKQIH + IR +
Sbjct: 242 ITGLMQNGLEREALDMFREMRLAG-FAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTD 300

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
              +V + +AL+DMYSKC S+  A  VF+     K+ I+W++++ GYG +G   EAV ++
Sbjct: 301 HKDNVFVGSALVDMYSKCRSIKSAETVFKRMP-QKNVISWTAMLVGYGQNGFSEEAVKIF 359

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            +M   G +PD  T+  V+S+C     + EG + +   + +  I   T +   ++ + G+
Sbjct: 360 FEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFIT-VSNALITLYGK 418

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPENPSNYV 465
            G  + +      M +    S W AL++     G +      ++ ++   L+P+  +   
Sbjct: 419 CGSTENSHRLFTEMNIRDEVS-WTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIG 477

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGL 492
            LS    +      +    +M+K+ G+
Sbjct: 478 VLSACSRAGLVEKGLQYFESMIKEHGI 504



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 169/351 (48%), Gaps = 37/351 (10%)

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           A++ KL  E ++      +H L +K     +  L+N+L++ Y K G  +   ++FD +PQ
Sbjct: 9   ASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQ 68

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
            N+ SWN  +S ++  G   L+ + +++F+ M  R+  +W   I+GY   G   +A+ ++
Sbjct: 69  PNLFSWNTILSVYSKLG---LLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVY 125

Query: 245 LEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
            ++ LKD  +  N+++  ++L  CS    +  G+QI+G  ++     DV + + L+DMY+
Sbjct: 126 -KLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYT 184

Query: 304 KCGSLDCARRVFEDSSF------------------------------NKDAITWSSIVSG 333
           K G +  A+R F++                                  +D+I+W+ +++G
Sbjct: 185 KLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITG 244

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
              +G   EA+ ++ +M   G   D  T   VL+ACG    + EG +I+  VI T   K 
Sbjct: 245 LMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDH-KD 303

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
              + + +VDM  +   +  A    K MP +   S W A++     +G SE
Sbjct: 304 NVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVIS-WTAMLVGYGQNGFSE 353


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 296/559 (52%), Gaps = 38/559 (6%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ-------- 70
           T  T+ + L   A  ++  + ++ HS ++ LG  S   V+  ++  Y  CG         
Sbjct: 163 TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVF 222

Query: 71  ---PTQS--------------------QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
              P +S                    + +F S+  + +  +N++I GY +N    +AL+
Sbjct: 223 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALK 282

Query: 108 LFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
           LFS M + S+++PD+FT+ ++      + ++ +G  +H   ++     +  + N+L+S Y
Sbjct: 283 LFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTY 342

Query: 167 VKCGKFSECLNLFDEMPQR--NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
            K G       + D+  +   NV S+   + G+   GD      +R +F  M  R+V AW
Sbjct: 343 AKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME---SAREMFGVMNNRDVVAW 399

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           TAMI GY QNG  DEA+ LF  M +    EPN  +L +VL  C+SL  L  GKQIH  AI
Sbjct: 400 TAMIVGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAI 458

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R  L    S+ NA+I MY++ GS   ARR+F+   + K+ ITW+S++     HG+G EAV
Sbjct: 459 RSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAV 518

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+ +M+  G +PD IT VGVLSAC  +G +NEG   Y+ + N ++I P     AC+VD+
Sbjct: 519 GLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDL 578

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           L RAG    A +FI+ MPVEP    WG+L+SA  +H N+E+ +LA + L+ ++P N   Y
Sbjct: 579 LARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAY 638

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
            +++N+Y++  RW   A +    K++ ++K  G SW  I  K H F   D  HP   ++Y
Sbjct: 639 SAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVY 698

Query: 525 EMLDDLILIMRGAAASPHL 543
            M   +   ++GA   P L
Sbjct: 699 AMAARMWEEIKGAGFVPDL 717



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 211/440 (47%), Gaps = 38/440 (8%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    L++ +A  G+   ++ VF  +  +D   +  ++ G  +     EA++   +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
               +P  FTL  +       +   VG  +H   +K+G    V +ANS+++MY KCG   
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
               +F+ MP R+V SWN  +S +   G   L   +  +F+ M  R++ +W AMI GY Q
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHLGRMDL---AESLFESMPGRSIVSWNAMIAGYNQ 273

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           NG   +AL LF  M  +  + P++ ++ SVL  C++L  +  GKQ+H + +R E+ ++  
Sbjct: 274 NGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQ 333

Query: 294 LCNALIDMYSKCGSLDCARRVFEDS--------SF------------------------N 321
           + NALI  Y+K GS++ ARR+ + S        SF                        N
Sbjct: 334 VTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNN 393

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D + W++++ GY  +G+  EA+ L+  M+  G +P+  T+  VLS C     ++ G +I
Sbjct: 394 RDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQI 453

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +   I +  ++ ++ +   ++ M  R+G    A      +        W +++ A   HG
Sbjct: 454 HCRAIRSL-LERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 442 NSEMQDLAYKSLIQ--LEPE 459
             E     ++ +++  +EP+
Sbjct: 513 QGEEAVGLFEEMLRAGVEPD 532



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 168/344 (48%), Gaps = 43/344 (12%)

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVK----CGKFSECLNLFDEMP--QRNVGSWNV 192
            G  IH  ++K G +    L N+L+S Y +     G   +   LFDE+P  +RNV +WN 
Sbjct: 44  AGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNS 103

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            +S  A SG  +    +R VF +M  R+  +WT M+ G  + G   EA+   L+M   D 
Sbjct: 104 LLSMFAKSGRLA---DARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT-ADG 159

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
             P + +L +VL +C+     + G+++H F ++  L   V + N++++MY KCG  + A 
Sbjct: 160 FTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETAS 219

Query: 313 RVFED------SSFN------------------------KDAITWSSIVSGYGLHGKGHE 342
            VFE       SS+N                        +  ++W+++++GY  +G   +
Sbjct: 220 TVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAK 279

Query: 343 AVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           A+ L+++M+   S  PD  TI  VLSAC   G +  G +++  ++ T  +   +++   +
Sbjct: 280 ALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRT-EMAYNSQVTNAL 338

Query: 402 VDMLGRAGQLDRALDFI-KTMPVEPSPSIWGALVSASVMHGNSE 444
           +    ++G ++ A   + ++M  + +   + AL+   V  G+ E
Sbjct: 339 ISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 38/227 (16%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK----CGSLDCARRVFED- 317
           +L  C +      G+ IH  A++  L     LCN L+  Y +     G L  ARR+F++ 
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 318 --------------SSFNK-----------------DAITWSSIVSGYGLHGKGHEAVLL 346
                         S F K                 DA++W+ +V G    G+  EA+  
Sbjct: 92  PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
              M   G  P   T+  VLS+C  +     G ++++ V+    +     +   V++M G
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVK-LGLGSCVPVANSVLNMYG 210

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
           + G  + A    + MPV  S S W A+VS +   G  ++ +  ++S+
Sbjct: 211 KCGDAETASTVFERMPVR-SVSSWNAMVSLNTHLGRMDLAESLFESM 256


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 286/506 (56%), Gaps = 42/506 (8%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H  I+  G  SN +V + L+  YA CG    ++ +  +++  DV  +NSL+ G+V++
Sbjct: 285 EQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRH 344

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISK--LSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
               EAL LF NM+  N+  DD+T  ++    + G I   +V    HGL IK GF    +
Sbjct: 345 GLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSV----HGLIIKTGFENYKL 400

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           ++N+L+ MY K G   +C                                 +  VF++M 
Sbjct: 401 VSNALVDMYAKTGDM-DC---------------------------------AYTVFEKML 426

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            ++V +WT+++ GY QN   +E+L +F +M++   + P++  + S+L  C+ L  L  GK
Sbjct: 427 EKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTG-VNPDQFIVASILSACAELTLLEFGK 485

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           Q+H   I+  L    S+ N+L+ MY+KCG LD A  +F      KD ITW++I+ GY  +
Sbjct: 486 QVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQV-KDVITWTAIIVGYAQN 544

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           GKG  ++  Y+ MV  G++PD IT +G+L AC  +GL++EG + +  +   Y IKP  E 
Sbjct: 545 GKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEH 604

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            AC++D+ GR+G+LD A   +  M V+P  ++W +L+SA  +H N E+ + A  +L +LE
Sbjct: 605 YACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELE 664

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P N   YV LSN+Y++SR+W+ VA++R +MK +G+ K PGCSW+ I+ + + F   D+ H
Sbjct: 665 PMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGH 724

Query: 518 PCSVSIYEMLDDLILIMRGAAASPHL 543
           P    IY  +D++IL ++ A   P +
Sbjct: 725 PREAEIYTKIDEIILRIKEAGYVPDM 750



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 204/469 (43%), Gaps = 73/469 (15%)

Query: 30  SATHRSLKLTKQSHSQILSLGHISNP------------FVSTKLITAYALCGQPTQSQLV 77
           +A++ S+  T Q  +Q+   G +++             +    +I++Y   G+  +++ +
Sbjct: 59  AASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEAREL 118

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F+    K    ++S+I+GY K     EA +LF +M         FTL ++ ++   +  +
Sbjct: 119 FDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLI 178

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD--EMPQRNVGSWNVRIS 195
             G +IHG  +K GF  +V +   L+ MY KC   SE   LF   E  ++N   W   ++
Sbjct: 179 QTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVT 238

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
           G                                  Y QNGD  +A+  F  M  +  +E 
Sbjct: 239 G----------------------------------YAQNGDGYKAVEFFRYMHAQG-VEC 263

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N+ +  ++L  CSS++    G+Q+HGF ++     +V + +AL+DMY+KCG L  A+ + 
Sbjct: 264 NQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNML 323

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC------ 369
           E    + D ++W+S++ G+  HG   EA+ L+  M     K D  T   VL+ C      
Sbjct: 324 ETME-DDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSIN 382

Query: 370 --GRSGL-INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
                GL I  G E Y  V N             +VDM  + G +D A    + M +E  
Sbjct: 383 PKSVHGLIIKTGFENYKLVSNA------------LVDMYAKTGDMDCAYTVFEKM-LEKD 429

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
              W +LV+      NS  + L     +++   NP  ++  S L A + 
Sbjct: 430 VISWTSLVTGYA-QNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAE 477



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 47/112 (41%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           VT  N     V   L   A    L+  KQ H   +  G   +  V   L+  YA CG   
Sbjct: 458 VTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLD 517

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
            +  +F S+Q KDV  + ++I GY +N     +L+ +  M  S   PD  T 
Sbjct: 518 DADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITF 569


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 187/541 (34%), Positives = 306/541 (56%), Gaps = 15/541 (2%)

Query: 8   NTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
           + FALV+     S  +   L +      LK  +    ++   G ++    S+ LI+ +A 
Sbjct: 97  HCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVT----SSALISRFAR 152

Query: 68  CGQPTQSQLVFNSIQHKDVYL----YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
            G+  +++ +F   +   V L    +N +I+G+ ++  + +A+ +F NM+   + PD  +
Sbjct: 153 KGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTS 212

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           ++++    G++    +G+ IH   IK G   D  + ++L+ MY KC   SE   +F+EM 
Sbjct: 213 VSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMD 272

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR--NVYAWTAMINGYVQNGDLDEAL 241
           + +VG+ N  ++G + +G   LV  +  VF Q K    NV +WT+MI    QNG   EAL
Sbjct: 273 EVDVGACNALVTGLSRNG---LVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEAL 329

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            LF EMQ++  ++PN V++  +LP C ++  L  GK  H F++R  + +DV + +ALIDM
Sbjct: 330 ELFREMQIEG-VKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDM 388

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y+KCG +  +R  F D   N++ ++W+S+++GY +HGK  EA+ ++  M   G KPD ++
Sbjct: 389 YAKCGRMLASRLCF-DMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVS 447

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
              VLSAC + GL  EG   ++S+   + ++   E  +C+V +LGR+G+L+ A   IK M
Sbjct: 448 FTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQM 507

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
           P EP   +WGAL+S+  +H   ++ ++A K + +LEP NP NY+ LSN+YAS   W  V 
Sbjct: 508 PFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVD 567

Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            +R MM+ RGLKK+PG SWI I  K H     D +HP    I E L  L + M+ +   P
Sbjct: 568 MVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVP 627

Query: 542 H 542
           H
Sbjct: 628 H 628



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 179/387 (46%), Gaps = 55/387 (14%)

Query: 99  NH-GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           NH GH   + +FS M    + PD   L T+ K    +  L  G  +H  ++  G  +D +
Sbjct: 53  NHFGH--VIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSV 110

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + +SL+ MYV+     +  N+FD++PQ  V + +  IS  A  G    V  ++ +F Q +
Sbjct: 111 VLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGR---VKETKELFYQTR 167

Query: 218 ----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                 N+ +W  MI+G+ ++G   +A+++F  M L+  ++P+  S+ SVLP    L   
Sbjct: 168 DLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEG-LKPDGTSVSSVLPAVGDLDMP 226

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKC---------------------------- 305
             G QIH + I++ L  D  + +ALIDMY KC                            
Sbjct: 227 LMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGL 286

Query: 306 ---GSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
              G +D A  VF+     + + ++W+S+++    +GK  EA+ L+ +M   G KP+ +T
Sbjct: 287 SRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVT 346

Query: 362 IVGVLSACGRSGLINEG-----LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           I  +L ACG    +  G       + N + N   +       + ++DM  + G++  +  
Sbjct: 347 IPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVG------SALIDMYAKCGRMLASRL 400

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNS 443
               MP     S W +L++   MHG +
Sbjct: 401 CFDMMPNRNLVS-WNSLMAGYAMHGKT 426


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 174/497 (35%), Positives = 280/497 (56%), Gaps = 42/497 (8%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K+ H  +   G   + F+ + L+  Y   G    +Q+ F  +  +DV L+N+++NGY + 
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
                 LE F  M   +V P  FT+     +   + DLN G +IHG ++K+G+   V ++
Sbjct: 216 GQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           NSL+ MY KC    + L                                   +F+ M+ +
Sbjct: 276 NSLIDMYGKCKCIEDAL----------------------------------EIFEMMREK 301

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           ++++W ++++ + Q GD D  L L L+  L   I+P+ V++ +VLP CS L  L  G++I
Sbjct: 302 DIFSWNSIVSVHEQCGDHDGTLRL-LDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREI 360

Query: 280 HGFAIRKELNHD------VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           HG+ I   L  D      V L NA+IDMY+KCGS+  A  VFE  S NKD  +W+ ++ G
Sbjct: 361 HGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMS-NKDVASWNIMIMG 419

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG+HG G+EA+ ++++M  +  KPD +T VGVLSAC  +G +++G      + + Y + P
Sbjct: 420 YGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAP 479

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
           T E   CV+DMLGRAGQLD A +   TMP+E +P +W AL++A  +H ++ + ++A + +
Sbjct: 480 TIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRV 539

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
            +LEPE+  +YV +SN+Y +  R++ V E+R  M+ + ++K+PGCSWI +    H F  A
Sbjct: 540 FELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSA 599

Query: 514 DKAHPCSVSIYEMLDDL 530
           D+AHP + SIY  L+ L
Sbjct: 600 DRAHPEAXSIYAGLNSL 616



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 152/349 (43%), Gaps = 54/349 (15%)

Query: 1   MILSSAR--NTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVS 58
           M+L + R  N  ++V SR     TV   L V A    L   +  H   + +G+ S   VS
Sbjct: 220 MVLETFRRMNDESVVPSR----FTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 275

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
             LI  Y  C     +  +F  ++ KD++ +NS+++ + +   H+  L L   M  + + 
Sbjct: 276 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQ 335

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF------VVDVILANSLMSMYVKCGKF 172
           PD  T+ T+      +  L  G  IHG  I  G       + DV+L N+++ MY KCG  
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            +   +F+ M  ++V SWN+                                  MI GY 
Sbjct: 396 RDAHLVFERMSNKDVASWNI----------------------------------MIMGYG 421

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
            +G  +EAL +F  M  + +++P++V+ V VL  CS    +S G+    F ++ +  +DV
Sbjct: 422 MHGYGNEALEMFSRM-CEVQLKPDEVTFVGVLSACSHAGFVSQGRN---FLVQMKSKYDV 477

Query: 293 SLC----NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +        +IDM  + G LD A  +        + + W ++++   LH
Sbjct: 478 APTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLH 526


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 179/478 (37%), Positives = 278/478 (58%), Gaps = 13/478 (2%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L++  + H +I+  G  SN FV   L+  YA  G    ++ +F+ +  +DV  +N++I G
Sbjct: 179 LEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAG 238

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           YV+N    +AL+LF  +   +V   +  +A  ++  G+++  N   L   +  +     +
Sbjct: 239 YVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQ-CGDVE--NAVELFEKMPEQ-----N 290

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           ++  N++++ YV+ G   E   LF  MP+RNV SWN  ISG A +G    V  + ++F  
Sbjct: 291 LVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQ---VEEALKLFKT 347

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M   NV +W AMI GY QNG  + AL LF +MQ+ D ++PN  +   VLP C++L  L  
Sbjct: 348 MPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVD-MKPNTETFAIVLPACAALAVLEQ 406

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G + H   IR     DV + N L+ MY+KCGS++ AR+VF D    +D+ + S+++ GY 
Sbjct: 407 GNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVF-DRMRQQDSASLSAMIVGYA 465

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           ++G   E++ L+ +M   G KPD +T VGVLSAC  +GL++EG + ++ +   Y I P  
Sbjct: 466 INGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAM 525

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           E   C++D+LGRAG  D A D I  MP++P   +WG+L+SA   H N ++ +   + LI 
Sbjct: 526 EHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIA 585

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           L P+NP+ YV LSN+YA++ RWD +  +R  MKDR +KK  GCSWI I  + H F V 
Sbjct: 586 LNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLVG 643



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 203/420 (48%), Gaps = 18/420 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVF 78
           S+T    LQ     +SL   K  H+ ++       +  +  KL++ Y   G   +++ VF
Sbjct: 64  SSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVF 123

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  K+V  + ++I  Y ++    EAL  F  M    + P+ FT A+I        DL 
Sbjct: 124 DEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPAC---TDLE 180

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           V    H   +K GF  +V + N L+ MY K G       LFD+MPQR+V SWN  I+G+ 
Sbjct: 181 VLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYV 240

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
            +G   L+  + ++F ++ +R+V  W  M+ GY Q GD++ A+ LF +M      E N V
Sbjct: 241 QNG---LIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMP-----EQNLV 292

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           S  +++     +   S  +    F I  E N  V   NA+I  +++ G ++ A ++F+  
Sbjct: 293 SWNTMI--AGYVQNGSVKEAFKLFQIMPERN--VISWNAVISGFAQNGQVEEALKLFKTM 348

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
               + ++W+++++GY  +G+   A+ L+ +M  +  KP+  T   VL AC    ++ +G
Sbjct: 349 P-ECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQG 407

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
            E +  VI +   +    +   +V M  + G ++ A      M  + S S+   +V  ++
Sbjct: 408 NEAHEVVIRS-GFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAI 466



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 169/382 (44%), Gaps = 71/382 (18%)

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           + L+    K     EAL +  +M  + + P   T  ++ +     K L    L+H   I+
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92

Query: 150 IGF-VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
             F   D+ L N L+S+YVK G   E   +FDEMP +NV SW                  
Sbjct: 93  TQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSW------------------ 134

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
                           TAMI  Y ++    EAL  F EMQ    I+PN  +  S+LP C+
Sbjct: 135 ----------------TAMIAAYARHEHGQEALGFFYEMQ-DVGIQPNHFTFASILPACT 177

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            L  L    + H   ++     +V + N L+DMY+K G ++ AR +F D    +D ++W+
Sbjct: 178 DLEVLG---EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELF-DKMPQRDVVSWN 233

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY------ 382
           ++++GY  +G   +A+ L+ ++     K D+IT   +++   + G +   +E++      
Sbjct: 234 AMIAGYVQNGLIEDALKLFQEI----PKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQ 289

Query: 383 -----NSVINTY-------------RIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMP 422
                N++I  Y             +I P   + +   V+    + GQ++ AL   KTMP
Sbjct: 290 NLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMP 349

Query: 423 VEPSPSIWGALVSASVMHGNSE 444
            E +   W A+++    +G +E
Sbjct: 350 -ECNVVSWNAMIAGYSQNGQAE 370


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 189/546 (34%), Positives = 294/546 (53%), Gaps = 38/546 (6%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T  + L   A  ++L + K+ HS ++ LG      V+  L+  YA CG    +++VF
Sbjct: 144 TQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVF 203

Query: 79  NSIQHKD-------------------------------VYLYNSLINGYVKNHGHNEALE 107
           + ++ KD                               +  +NS+I GY        ALE
Sbjct: 204 DRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALE 263

Query: 108 LFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
            FS M  S+ + PD FTL ++       + L +G  IH   ++    +   + N+L+SMY
Sbjct: 264 TFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMY 323

Query: 167 VKCGKFSECLNLFD--EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
            K G       + +    P  NV ++   + G+   GD      +R +FD +K R+V AW
Sbjct: 324 AKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDID---PARAIFDSLKHRDVVAW 380

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           TAMI GY QNG + +ALVLF  + +++  +PN  +L +VL   SSL  L  GKQ+H  AI
Sbjct: 381 TAMIVGYAQNGLISDALVLF-RLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAI 439

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R E    VS+ NALI MYS+ GS+  AR++F      +D +TW+S++     HG G+EA+
Sbjct: 440 RLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAI 499

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+ KM+ +  KPD IT VGVLSAC   GL+ +G   +N + N + I+PT+   AC++D+
Sbjct: 500 ELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDL 559

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           LGRAG L+ A +FI+ MP+EP    WG+L+S+  +H   ++  +A + L+ ++P N   Y
Sbjct: 560 LGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAY 619

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           ++L+N  ++  +W+  A++R  MKD+ +KK  G SW+ I  K H F V D  HP   +IY
Sbjct: 620 LALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIY 679

Query: 525 EMLDDL 530
            M+  +
Sbjct: 680 CMISKI 685



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 203/443 (45%), Gaps = 38/443 (8%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           +   F    +++A+A  G    ++ VF+ I   D   + ++I GY        A+  F  
Sbjct: 76  LKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLR 135

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M  S +SP  FT   +       + L+VG  +H   +K+G    V +ANSL++MY KCG 
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGD 195

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                 +FD M  ++  +WN  IS H     F L +    +FDQM   ++ +W ++I GY
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLAL---ALFDQMTDPDIVSWNSIITGY 252

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
              G    AL  F  M     ++P+K +L SVL  C++   L  GKQIH   +R +++  
Sbjct: 253 CHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIA 312

Query: 292 VSLCNALIDMYSKCGSLDCARRVFE--------------------------------DSS 319
            ++ NALI MY+K G+++ A R+ E                                DS 
Sbjct: 313 GAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSL 372

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            ++D + W++++ GY  +G   +A++L+  M+  G KP+  T+  VLS       ++ G 
Sbjct: 373 KHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGK 432

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           +++   I    +  +  +   ++ M  R+G +  A      +        W +++ +   
Sbjct: 433 QLHAVAIRLEEVS-SVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQ 491

Query: 440 HG-NSEMQDLAYKSL-IQLEPEN 460
           HG  +E  +L  K L I L+P++
Sbjct: 492 HGLGNEAIELFEKMLRINLKPDH 514



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 188/412 (45%), Gaps = 70/412 (16%)

Query: 118 SPDDFTLATISKLSGEIK--DLNVGMLIHGLSIKIGF-VVDVILANSLMSMYVKCGKFSE 174
           +P   + A +  L   IK  D  +G  IH   IK G   + V L N+L+++YVK G  S+
Sbjct: 7   NPPSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSD 66

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
              LFDEMP +   SWN  +S HA +G+      +RRVFD++ + +  +WT MI GY   
Sbjct: 67  AHRLFDEMPLKTTFSWNTILSAHAKAGNLD---SARRVFDEIPQPDSVSWTTMIVGYNHL 123

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G    A+  FL M +   I P + +  +VL +C++   L  GK++H F ++   +  V +
Sbjct: 124 GLFKSAVHAFLRM-VSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPV 182

Query: 295 CNALIDMYSKCGSLDCARRVFE------------------------------DSSFNKDA 324
            N+L++MY+KCG    A+ VF+                              D   + D 
Sbjct: 183 ANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDI 242

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIY- 382
           ++W+SI++GY   G    A+  ++ M+   S KPD  T+  VLSAC     +  G +I+ 
Sbjct: 243 VSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHA 302

Query: 383 --------------NSVINTYRIKPTTEICACVVDMLGRAG----QLDRALD-FIKTMPV 423
                         N++I+ Y      E+   +V++ G            LD + K   +
Sbjct: 303 HIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDI 362

Query: 424 EPSPSI-----------WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           +P+ +I           W A++     +G      + ++ +I+  P+ P+NY
Sbjct: 363 DPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPK-PNNY 413


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 169/502 (33%), Positives = 286/502 (56%), Gaps = 1/502 (0%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           ++ H++I++ G  S+  V+T LI  Y  CG   +++ VF+ ++ +D+  +N +I  YV+N
Sbjct: 227 RKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQN 286

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
              +EALEL+  +          T  +I      +K L  G L+H   ++ G   +V +A
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
            +L++MY KCG   E   +F+ M  R+  +W+  I  +AS+G      ++R+VFD++  R
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR 406

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           +   W AMI  YVQNG    A+ +F EM     ++P+ V+ ++VL  C+SL  LS  K +
Sbjct: 407 DTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKAL 466

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H      EL  +V + N LI+MY++CGSL+ A R+F  ++  K  ++W+++V+ +  +G+
Sbjct: 467 HAQISESELESNVVVTNTLINMYARCGSLEEAERLFA-AAKEKTVVSWTAMVAAFSQYGR 525

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+ L+ +M   G KPD +T   +L  C   G + +G   +  +   + + PT +  A
Sbjct: 526 YAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFA 585

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            +VD+LGR+G+L  A + +++MP EP P  W   ++A  +HG  E+ + A + + +L+P 
Sbjct: 586 AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPS 645

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           + + Y+++SN+YA+   W+ VA +R  M++RGLKK PG S+I + GK H FS   K HP 
Sbjct: 646 STAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPR 705

Query: 520 SVSIYEMLDDLILIMRGAAASP 541
           +  I E L  L  +MR A   P
Sbjct: 706 TDEICEELTRLHGLMRAAGYVP 727



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 225/482 (46%), Gaps = 77/482 (15%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           F+ V     SL   ++ H+++   G  S   ++  L+T YA  G    ++ +F S+Q +D
Sbjct: 113 FVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRD 172

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
              +N++I  + ++   + AL +F  M   ++ P+  T   +       + L  G  IH 
Sbjct: 173 ETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             +  GF  D+++A +L++MY KCG   E   +FD+M +R++ SWNV             
Sbjct: 232 EIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNV------------- 278

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                                MI  YVQNGD  EAL L+ ++ ++   +  K + VS+L 
Sbjct: 279 ---------------------MIGCYVQNGDFHEALELYQKLDMEG-FKRTKATFVSILG 316

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            CSS+  L+ G+ +H   + + L+ +V++  AL++MY+KCGSL+ AR+VF ++  N+DA+
Sbjct: 317 ACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVF-NAMKNRDAV 375

Query: 326 TWSSIVSGYGLHGKGHEA--------------VLLYNKMV-------------------- 351
            WS+++  Y  +G G +A               + +N M+                    
Sbjct: 376 AWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMT 435

Query: 352 -CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G KPD +T + VL AC   G ++E ++  ++ I+   ++    +   +++M  R G 
Sbjct: 436 GAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQDLAYKSLIQLEPENPSNYVSLSN 469
           L+ A         E +   W A+V+A   +G  +E  DL  +  + LE   P +    S 
Sbjct: 495 LEEAERLFAAAK-EKTVVSWTAMVAAFSQYGRYAEALDLFQE--MDLEGVKPDDVTYTSI 551

Query: 470 LY 471
           L+
Sbjct: 552 LF 553



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 146/363 (40%), Gaps = 83/363 (22%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T AT    L   ++ ++L   +  HS IL  G  S   V+T L+  YA CG   +++ VF
Sbjct: 307 TKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVF 366

Query: 79  NSIQHKDVY----------------------------------LYNSLINGYVKNHGHNE 104
           N+++++D                                     +N++I  YV+N     
Sbjct: 367 NAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVA 426

Query: 105 ALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163
           A+++F  M   + + PD  T   + +    +  L+    +H    +     +V++ N+L+
Sbjct: 427 AMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLI 486

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
           +MY +CG   E   LF    ++ V S                                  
Sbjct: 487 NMYARCGSLEEAERLFAAAKEKTVVS---------------------------------- 512

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG------- 276
           WTAM+  + Q G   EAL LF EM L+  ++P+ V+  S+L  C+    L  G       
Sbjct: 513 WTAMVAAFSQYGRYAEALDLFQEMDLEG-VKPDDVTYTSILFVCTHGGSLEQGWRYFTDM 571

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
            ++HG A     +H      A++D+  + G L  A+ + E   F  D + W + ++   +
Sbjct: 572 AELHGLA--PTADHFA----AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRI 625

Query: 337 HGK 339
           HGK
Sbjct: 626 HGK 628



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 7/218 (3%)

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           DR +P+ V+ ++VL +CSS   ++ G+ +H          D  + NALI MY KC SL  
Sbjct: 2   DR-QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 311 ARRVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
           AR VFE   +  ++ ++W+++++ Y  +G   EA++LY +M   G   D +T V VL AC
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
                + +G EI+N V  +  +     +   +V M  R G +  A    +++      S 
Sbjct: 121 SS---LAQGREIHNRVFYS-GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS- 175

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           W A++ A    G+       +K +      N + Y+++
Sbjct: 176 WNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINV 213


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 191/579 (32%), Positives = 300/579 (51%), Gaps = 76/579 (13%)

Query: 27   LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
            L+  A    +K  K+ H  +L LG  SN  V   LI AY   G    +  +F+ +   DV
Sbjct: 477  LKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDV 536

Query: 87   YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
              +NS+ING V N      LE+F  M    V  D  TL ++      I +L++G  +HG 
Sbjct: 537  VSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGF 596

Query: 147  SIKIGFVVDVILANSLMSMYVKCGK-------------------------------FSEC 175
             +K  F  +V+ +N+L+ MY KCG                                +S+ 
Sbjct: 597  GVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDA 656

Query: 176  LNLFDEMPQ--------------------------RNVGSW-------------NVRISG 196
            + LFDEM                            R+V S+             N  I+ 
Sbjct: 657  IGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINM 716

Query: 197  HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
            +A  G    V  +R VF ++  +++ +W  MI GY QN   +EAL LFL+MQ   + +P+
Sbjct: 717  YAKCGS---VEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ--KQFKPD 771

Query: 257  KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
             +++  VLP C+ L  L  G++IHG  +R+    D+ +  AL+DMY+KCG L  A+ +F 
Sbjct: 772  DITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLF- 830

Query: 317  DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
            D    KD I+W+ +++GYG+HG G+EA+  +N+M   G +PD  +   +L+AC  SGL+N
Sbjct: 831  DMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLN 890

Query: 377  EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            EG + +NS+ N   ++P  E  ACVVD+L R G L +A  FI++MP++P  +IWG L+S 
Sbjct: 891  EGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950

Query: 437  SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
              +H + ++ +   + + +LEP+N   YV L+N+YA + +W+ V +LR  M+ RG K++P
Sbjct: 951  CRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNP 1010

Query: 497  GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            GCSWI + GK + F   +  HP +  I  +L  L + M+
Sbjct: 1011 GCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQ 1049



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 210/433 (48%), Gaps = 41/433 (9%)

Query: 7   RNTFALVT-SRNYTSATVQH--FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
           RN   L+T S++Y      +   LQ+ A  +SL+  K+ HS I+S G   +  +  KL+ 
Sbjct: 353 RNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVF 412

Query: 64  AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
            Y  CG   Q + +F+ I +  V+L+N L++ Y K     E++ LF  M    V  + +T
Sbjct: 413 MYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYT 472

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
              + K    +  +     +HG  +K+GF  +  + NSL++ Y K G      NLFDE+ 
Sbjct: 473 FTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS 532

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
           + +V SWN                                  +MING V NG     L +
Sbjct: 533 EPDVVSWN----------------------------------SMINGCVVNGFSGNGLEI 558

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           F++M +   +E +  +LVSVL   +++  LS G+ +HGF ++   + +V   N L+DMYS
Sbjct: 559 FIQMLILG-VEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYS 617

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           KCG+L+ A  VF     +   ++W+S ++ Y   G   +A+ L+++M   G +PDI T+ 
Sbjct: 618 KCGNLNGATEVFVKMG-DTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVT 676

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            ++ AC  S  +++G ++++ VI    +     +   +++M  + G ++ A      +PV
Sbjct: 677 SIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV 735

Query: 424 EPSPSIWGALVSA 436
           +   S W  ++  
Sbjct: 736 KDIVS-WNTMIGG 747



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 39/318 (12%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   +   A   SL   +  HS ++  G  SN  V+  LI  YA CG   +++LVF+ I
Sbjct: 674 TVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKI 733

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD+  +N++I GY +N   NEALELF +M      PDD T+A +      +  L+ G 
Sbjct: 734 PVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGR 792

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IHG  ++ G+  D+ +A +L+ MY KCG       LFD +P++++ SW           
Sbjct: 793 EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISW----------- 841

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  T MI GY  +G  +EA+  F EM++   IEP++ S  
Sbjct: 842 -----------------------TVMIAGYGMHGFGNEAISTFNEMRIAG-IEPDESSFS 877

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN--ALIDMYSKCGSLDCARRVFEDSS 319
            +L  CS    L+ G +    ++R E   +  L +   ++D+ ++ G+L  A +  E   
Sbjct: 878 VILNACSHSGLLNEGWKFFN-SMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMP 936

Query: 320 FNKDAITWSSIVSGYGLH 337
              D   W  ++SG  +H
Sbjct: 937 IKPDTTIWGVLLSGCRIH 954



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/441 (21%), Positives = 194/441 (43%), Gaps = 55/441 (12%)

Query: 2   ILSSARNTFALVTSRNYTSATVQHFLQVSATHRSL-KLTKQSHSQILSLGHISNPFVSTK 60
           + +S+  TF  ++S + T  T   +     TH++    TK+SH++ +       P  +  
Sbjct: 265 VENSSMFTFTTLSSVSKTIPTSSPY----HTHKTTSNYTKKSHNRFI---FFKQPRRTCL 317

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L +   +C  P+     F +  H      N+ IN + +      A+EL +      +  +
Sbjct: 318 LHST--VCVSPS-----FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLN 370

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            +   ++ +L  E K L  G  +H + I  G  +D  L   L+ MYV CG          
Sbjct: 371 SY--CSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGD--------- 419

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                                    +V+ R++FD++    V+ W  +++ Y + G+  E+
Sbjct: 420 -------------------------LVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRES 454

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           + LF +MQ K  +  N  +   VL   ++L  +   K++HG+ ++     + ++ N+LI 
Sbjct: 455 VSLFKKMQ-KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIA 513

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
            Y K G ++ A  +F++ S   D ++W+S+++G  ++G     + ++ +M+ LG + D+ 
Sbjct: 514 AYFKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLT 572

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+V VL A    G ++ G  ++   +              ++DM  + G L+ A +    
Sbjct: 573 TLVSVLVAWANIGNLSLGRALHGFGVKAC-FSEEVVFSNTLLDMYSKCGNLNGATEVFVK 631

Query: 421 MPVEPSPSIWGALVSASVMHG 441
           M  + +   W + ++A V  G
Sbjct: 632 MG-DTTIVSWTSTIAAYVREG 651



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 6/218 (2%)

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           A IN + + GDL  A+ L  + +     E    S  SVL  C+    L  GK++H   I 
Sbjct: 341 AKINKFCEMGDLRNAIELLTKSK---SYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             ++ D +L   L+ MY  CG L   R++F D   N     W+ ++S Y   G   E+V 
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIF-DKIMNDKVFLWNLLMSEYAKIGNFRESVS 456

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           L+ KM  LG   +  T   VL      G + E   ++  V+        T +   ++   
Sbjct: 457 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLK-LGFGSNTAVVNSLIAAY 515

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            + G ++ A +    +  EP    W ++++  V++G S
Sbjct: 516 FKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNGFS 552


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 189/554 (34%), Positives = 287/554 (51%), Gaps = 68/554 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L+  A   + +  KQ H  +L LG  S+PFV T LI  YA  G+   ++LVF+
Sbjct: 132 SYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFS 191

Query: 80  -------------------------------SIQHKDVYLYNSLINGYVKNHGHNEALEL 108
                                           I  +D   +N++I GY ++    EAL  
Sbjct: 192 KSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAF 251

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           F  M  +NV+P++ T+ T+     +   L +G  +       G   ++ L N+L+ MY K
Sbjct: 252 FQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSK 311

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG                                     ++R +F+ +  +++ +W  MI
Sbjct: 312 CGDLD----------------------------------KARDLFEGICEKDIISWNVMI 337

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288
            GY       EAL LF +MQ +  +EPN V+ VS+LP C+ L  L  GK IH +  +K L
Sbjct: 338 GGYSHMNSYKEALALFRKMQ-QSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFL 396

Query: 289 N-HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
              + SL  +LIDMY+KCG+++ A++VF      K   +W++++SG  +HG  + A+ L+
Sbjct: 397 GLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK-PKSLGSWNAMISGLAMHGHANMALELF 455

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            +M   G +PD IT VGVLSAC  +GL+  G + ++S++  Y I P  +   C++D+LGR
Sbjct: 456 RQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGR 515

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           AG  D A   +K M ++P  +IWG+L+ A  +HGN E+ + A K L +LEPENP  YV L
Sbjct: 516 AGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLL 575

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           SN+YA++ RWD VA +RT + D+G+KK PGCS I +    H F V DK H  S  IY+ML
Sbjct: 576 SNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKML 635

Query: 528 DDLILIMRGAAASP 541
           D++  ++  A   P
Sbjct: 636 DEIDQLLEKAGHVP 649



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 215/421 (51%), Gaps = 8/421 (1%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHK 84
           L + +T +S +  KQ HSQI+  G  +  F  +KLI   A+   G  + + L+F SI+  
Sbjct: 36  LTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQP 95

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           + +++N++I G   +     A++ +  M    V P+ +T   + K   ++     G  IH
Sbjct: 96  NQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIH 155

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
           G  +K+G   D  +  SL++MY + G+      +F +   R+  S+   I+G+   G   
Sbjct: 156 GHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG--- 212

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
            +  +RR+F+++  R+  +W AMI GY Q+G  +EAL  F EM+ +  + PN+ ++V+VL
Sbjct: 213 CLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMK-RANVAPNESTMVTVL 271

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             C+    L  G  +  +     L  ++ L NALIDMYSKCG LD AR +FE     KD 
Sbjct: 272 SACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGIC-EKDI 330

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           I+W+ ++ GY       EA+ L+ KM     +P+ +T V +L AC   G ++ G  I+  
Sbjct: 331 ISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY 390

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +   +     T +   ++DM  + G ++ A      M  + S   W A++S   MHG++ 
Sbjct: 391 IDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPK-SLGSWNAMISGLAMHGHAN 449

Query: 445 M 445
           M
Sbjct: 450 M 450


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 193/549 (35%), Positives = 298/549 (54%), Gaps = 43/549 (7%)

Query: 36  LKLTKQSHSQILSL----GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           L+  + +H+++L L     H ++  V  KLI AYA C     ++ V ++   +    +N 
Sbjct: 31  LRSLRAAHARLLFLLRLPSHPASAAVRVKLIQAYAACAALPAARAVLDASPDRTTVFFNV 90

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVS--PDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           L+ G      H +AL LF++M     +  PD +T     K       L +G  IH  + +
Sbjct: 91  LLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQIHSSTAR 150

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           +G   +V +A+S +SMY +CG+  +   +F+EM  R+V SWN  ISG A +G F   +  
Sbjct: 151 LGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDV 210

Query: 210 RR-----------------------------------VFDQMKRRNVYAWTAMINGYVQN 234
            R                                   VFD+M+ + + +W AM+  Y  N
Sbjct: 211 FRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNN 270

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
               EA+ LF+ MQ KD IEP+ V+L +VLP+C  +  LS GK+IH    R+ +   + L
Sbjct: 271 EMHVEAVELFMRMQ-KDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLL 329

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            NAL+DMY+ CG L  AR VF DS   +D ++W+SI+S YG HG G EA+ L+ KM   G
Sbjct: 330 ENALMDMYANCGCLKEARDVF-DSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQG 388

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
            +PD I  V +L+AC  +GL++ G   + S+ + + I P  E  AC+VD+LGRAG +  A
Sbjct: 389 LEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREA 448

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            DFI  MP++P+  +WGAL+ A  +H N ++  LA  SL++L P+    YV LSN+YA +
Sbjct: 449 YDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARA 508

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
            RW  V+ +R++M+ +G+KK PG S   +  + H F + D +HP S  IY+ L +L+  +
Sbjct: 509 GRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRI 568

Query: 535 RGAAASPHL 543
           R    +P +
Sbjct: 569 REMGYNPEV 577



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 160/372 (43%), Gaps = 49/372 (13%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A    L L +Q HS    LG   N FV+   I+ YA CG+P  +  +F  +Q++DV
Sbjct: 129 LKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDV 188

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNV-SPDDFTLATISKLSGEIKDLNVGMLIHG 145
             +N++I+G+        A+++F  +       PD  T+A+I    G+ +  ++ +L  G
Sbjct: 189 VSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALL-KG 247

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG-HASSGDFS 204
           +  ++ F   +I  N+++++Y       E + LF  M +  +    V ++    S G+ S
Sbjct: 248 VFDEMRF-KGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVS 306

Query: 205 L---------VVRSRR--------------------------VFDQMKRRNVYAWTAMIN 229
                     V++ RR                          VFD M  R+V +WT++I+
Sbjct: 307 ALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIIS 366

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAI 284
            Y ++G   EA+ LF +M     +EP+ ++ V++L  CS    L  GK         F I
Sbjct: 367 AYGRHGHGREAIDLFEKM-CGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHI 425

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
             +L H       ++D+  + G +  A           +   W +++    +H      +
Sbjct: 426 APKLEHYA----CMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGL 481

Query: 345 LLYNKMVCLGSK 356
           L  + ++ L  K
Sbjct: 482 LAADSLLRLAPK 493


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 182/517 (35%), Positives = 283/517 (54%), Gaps = 31/517 (5%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           ++  + I+A +   +   + L +  ++  +V++YN++I G+V+++   +ALEL+  M  +
Sbjct: 15  YLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRA 74

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
           NVSP  +T  ++ K  G +  L     +HG   + GF   V +  SL+  Y   G+  E 
Sbjct: 75  NVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEES 134

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLV----------------------VRSRRV- 212
           + +FDEMP+R+V +W   +SG    GD S                         R R V 
Sbjct: 135 VRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVD 194

Query: 213 -----FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
                F+QM  R++ +WT MIN Y QN    EAL +F EM  K  I P++V++ +V+  C
Sbjct: 195 VAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMA-KHGISPDEVTMATVISAC 253

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           + L  L  GK+IH + ++   N DV + +ALIDMY+KCGSLD +  +F      K+   W
Sbjct: 254 AHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLR-EKNLFCW 312

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +S++ G  +HG   EA+ +++KM     KP+ +T V VLSAC  +GLI EG + + S+  
Sbjct: 313 NSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTR 372

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            + I P  E   C+VD+L +AG L+ AL  I+TM +EP+  IWGAL+S   +H N E+  
Sbjct: 373 DHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQ 432

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL-KKSPGCSWISIHGK 506
           +A   L+ LEP N   Y  L N+ A   RW   A++R  MK++G+ K+ PG SWI +  +
Sbjct: 433 VAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQ 492

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            H F+ +DK+H  S  IY +L +L   M+ A   P L
Sbjct: 493 VHQFAASDKSHAASDEIYSLLAELDGQMKLAGYVPEL 529


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 175/516 (33%), Positives = 291/516 (56%), Gaps = 11/516 (2%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           QVS T    +L K+ H  +L  G   + FV   L+  Y  C     ++LVF+ +  +DV 
Sbjct: 136 QVSWT----QLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVV 191

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            ++++I    +N   + ALEL   M +  V P +  + ++  L  +  ++ +G  +H   
Sbjct: 192 SWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYV 251

Query: 148 IKI--GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
           I+      + V    +L+ MY KCG       LF+ + Q+ V SW   I+G   S     
Sbjct: 252 IRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLE- 310

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
              +R +FD  + R+V  WTAM++ Y Q   +D+A  LF +M+    + P KV++VS+L 
Sbjct: 311 --EARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG-VRPTKVTIVSLLS 367

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C+    L  GK +H +  ++ +  D  L  AL+DMY+KCG ++ A R+F ++  ++D  
Sbjct: 368 LCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEA-ISRDIC 426

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
            W++I++G+ +HG G EA+ ++ +M   G KP+ IT +G+L AC  +GL+ EG +++  +
Sbjct: 427 MWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKM 486

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           ++T+ + P  E   C+VD+LGRAG LD A + IK+MP++P+  +WGALV+A  +H N ++
Sbjct: 487 VHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQL 546

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            +LA   L+++EPEN    V +SN+YA++ RW   A +R  MK  G+KK PG S I ++G
Sbjct: 547 GELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNG 606

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             H F + D++HP    I EML ++   +  A   P
Sbjct: 607 TVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVP 642



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 173/389 (44%), Gaps = 71/389 (18%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +N +I  Y K +    AL +++ +   +   D+F   ++ K  G++    +G  IHG  +
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K G   DV + N+LM MY +C        +FD+M +R+V SW                  
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSW------------------ 193

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
                           + MI    +N + D AL L  EM    ++ P++V++VS++   +
Sbjct: 194 ----------------STMIRSLSRNKEFDMALELIREMNFM-QVRPSEVAMVSMVNLFA 236

Query: 269 SLIGLSGGKQIHGFAIRKELNHD--VSLCNALIDMYSKCGSLDCARRVFE---------- 316
               +  GK +H + IR   N    V    AL+DMY+KCG L  AR++F           
Sbjct: 237 DTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSW 296

Query: 317 --------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
                               DS+ N+D + W++++S Y       +A  L+++M   G +
Sbjct: 297 TAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 356

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           P  +TIV +LS C  +G ++ G  ++ S I+  R++    +   +VDM  + G ++ A  
Sbjct: 357 PTKVTIVSLLSLCAVAGALDLGKWVH-SYIDKERVEVDCILNTALVDMYAKCGDINAAGR 415

Query: 417 -FIKTMPVEPSPSIWGALVSASVMHGNSE 444
            FI+   +     +W A+++   MHG  E
Sbjct: 416 LFIEA--ISRDICMWNAIITGFAMHGYGE 442


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 280/508 (55%), Gaps = 12/508 (2%)

Query: 27   LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
            L   A  +  +   Q H+ +    H  + ++ + L+  YA C  P +++ VF ++  +++
Sbjct: 899  LSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNI 958

Query: 87   YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
              +NSLI  Y +N    EAL LF +M  +   PD+ TLA++      +     G  +H  
Sbjct: 959  VSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHAR 1018

Query: 147  SIKIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             +K   F  D++L+N+L+ MY KCG+      +FD M  R+V S    I+G+A S +   
Sbjct: 1019 VVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSAN--- 1075

Query: 206  VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
            V  ++ VF QM  +NV AW  +I  Y QNG+ +EAL LF+ ++ ++ + P   +  +VL 
Sbjct: 1076 VEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLK-RESVWPTHYTYGNVLN 1134

Query: 266  TCSSLIGLSGGKQIH------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
             C ++  L  G+Q H      GF        DV + N+L+DMY K GS+D   +VFE  +
Sbjct: 1135 ACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMA 1194

Query: 320  FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
              +D ++W++++ G+  +G+  +A+ L+ +M+C    PD +T++GVLSACG SGL+ EG 
Sbjct: 1195 -ARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGR 1253

Query: 380  EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
              + S+   + I P+ +   C++D+LGRAG L    + IK M +EP   +W +L+ +  +
Sbjct: 1254 RYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRL 1313

Query: 440  HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
            H N EM + A   L +L+P N   YV LSN+YA   +W  V  +R+ MK RG+ K PGCS
Sbjct: 1314 HKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCS 1373

Query: 500  WISIHGKTHCFSVADKAHPCSVSIYEML 527
            WI I  K   F   D  HPC   I+ +L
Sbjct: 1374 WIEIGRKVSVFLARDNGHPCKNEIHAIL 1401



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 205/421 (48%), Gaps = 36/421 (8%)

Query: 46  ILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA 105
           + +L  + +  +ST +++  A CG+   ++ VF  ++ +++  +N+++ GY+++     A
Sbjct: 309 LFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGA 368

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           L LF  M       D  TL ++      I D+  G  +H  +IK GF    IL N+L+ M
Sbjct: 369 LLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRM 428

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y KCG    CL   + +                             +F+    R+ Y+W 
Sbjct: 429 YSKCG----CLRSAERL----------------------------LLFEMGSERDSYSWN 456

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           ++I+GY ++   + AL    +MQ    + PN+ +  S L  C+++  L  G QIH + IR
Sbjct: 457 SLISGYERHSMSEAALYALTKMQ--SEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIR 514

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
           K    D  L + LIDMY KC   D + R+FE +  ++D I W+S++ G    GKG   + 
Sbjct: 515 KGYEIDDILRSVLIDMYCKCRQFDYSIRIFE-ARPSRDVILWNSMIFGCAYSGKGEYGLD 573

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           L+++M   G K D +T +G L +C   G +  G   Y +++    I P  E   C++++L
Sbjct: 574 LFDEMQKQGIKADSVTFLGALVSCISEGHVRLG-RSYFTLMMDESIIPRIEHYECMIELL 632

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
           G+ G +    DF++ MP EP+ ++W  +      +GN ++ + A K +    P  P  +V
Sbjct: 633 GKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNPLTPVQFV 692

Query: 466 S 466
           +
Sbjct: 693 A 693



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 207/429 (48%), Gaps = 16/429 (3%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT+   L   A    L   +Q H  I      SN  + T L+  Y  C     ++  F+ 
Sbjct: 152 ATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDD 211

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           I   +   +N ++  Y      + A+++F  M  + V P  +T++       +   L  G
Sbjct: 212 ILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEG 271

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             IH   ++ G+   V + +S++ MY KCG      +LF+  P +++      +SG AS 
Sbjct: 272 RCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASC 331

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           G    +  ++RVF+ MK RN+ +W AM+ GY+++ DL  AL+LF +M+ + R E + ++L
Sbjct: 332 GR---IADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETR-EFDAITL 387

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR--VFEDS 318
            SVL  C+ ++ +  G+++H FAI+        L NAL+ MYSKCG L  A R  +FE  
Sbjct: 388 GSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMG 447

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
           S  +D+ +W+S++SGY  H     A+    KM      P+  T    L+AC    L+ +G
Sbjct: 448 S-ERDSYSWNSLISGYERHSMSEAALYALTKMQS-EVTPNQSTFSSALAACANIFLLKQG 505

Query: 379 LEIYNSVINT-YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI--WGALVS 435
           ++I+  +I   Y I       + ++DM  +  Q D +   I+     PS  +  W +++ 
Sbjct: 506 MQIHAYMIRKGYEIDDILR--SVLIDMYCKCRQFDYS---IRIFEARPSRDVILWNSMIF 560

Query: 436 ASVMHGNSE 444
                G  E
Sbjct: 561 GCAYSGKGE 569



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/486 (24%), Positives = 209/486 (43%), Gaps = 86/486 (17%)

Query: 54   NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
            N F    L++A+A  G+P  ++ +F++I   D   YN++I    ++    +AL   + M+
Sbjct: 825  NTFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMH 884

Query: 114  YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
              +   + ++ A+        KD   G+ +H L  K     DV + ++L+ MY KC    
Sbjct: 885  ADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPE 944

Query: 174  ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
            E   +F+ MP+RN+ SWN                                  ++I  Y Q
Sbjct: 945  EARRVFEAMPERNIVSWN----------------------------------SLITCYEQ 970

Query: 234  NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDV 292
            NG + EALVLF+ M +K    P++V+L SV+  C+ L     G+Q+H   ++ +    D+
Sbjct: 971  NGPVGEALVLFVSM-MKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDM 1029

Query: 293  SLCNALIDMYSKCGSLDCARRVF------------------------EDSSF------NK 322
             L NAL+DMY+KCG    AR VF                        ED+         K
Sbjct: 1030 VLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEK 1089

Query: 323  DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
            + I W+ +++ Y  +G+  EA+ L+ ++      P   T   VL+ACG    +  G + +
Sbjct: 1090 NVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAH 1149

Query: 383  NSVINT---YRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
              V+     +   P +++     +VDM  + G +D      + M    + S W A++   
Sbjct: 1150 VHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVS-WNAMIVGH 1208

Query: 438  VMHGNSEMQDLAYKSLIQLEPENPSNYVSL--------SNLYASSRRWDAVAELRTMMKD 489
              +G ++     ++ ++    E+P +   +        S L    RR+      R+M +D
Sbjct: 1209 AQNGRAKDALHLFERML-CSKESPDSVTMIGVLSACGHSGLVEEGRRY-----FRSMTED 1262

Query: 490  RGLKKS 495
             G+  S
Sbjct: 1263 HGIIPS 1268



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 134/263 (50%), Gaps = 5/263 (1%)

Query: 148  IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
            +K  FV +  L N+L+S Y + G+  +   +FDE+P  N  S+N  +S HA  G      
Sbjct: 787  LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGR---PA 843

Query: 208  RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
             +R +F  +   +  ++ A+I    Q+    +AL LFL     D    N  S  S L  C
Sbjct: 844  DARALFHAIPDPDQCSYNAVIAALAQHSRGADAL-LFLAAMHADDFVLNAYSFASALSAC 902

Query: 268  SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
            ++      G Q+H    +     DV + +AL+DMY+KC   + ARRVFE +   ++ ++W
Sbjct: 903  AAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFE-AMPERNIVSW 961

Query: 328  SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
            +S+++ Y  +G   EA++L+  M+  G  PD +T+  V+SAC       EG +++  V+ 
Sbjct: 962  NSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVK 1021

Query: 388  TYRIKPTTEICACVVDMLGRAGQ 410
            + R +    +   +VDM  + G+
Sbjct: 1022 SDRFREDMVLSNALVDMYAKCGR 1044



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 189/453 (41%), Gaps = 78/453 (17%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           F+  + I + A CG    ++ +F+ +  +D   +N++I    +    +EAL LFSNM   
Sbjct: 86  FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
            + P D T+A++     E  DL     +HG   K  F  +VIL  +L+ +Y  C   ++ 
Sbjct: 146 GIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADA 205

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
              FD++ + N  SWNV                                  ++  Y   G
Sbjct: 206 RRAFDDILEPNAISWNV----------------------------------IVRRYHLAG 231

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
             D A+ +F  M L   + P   ++   +  C     L  G+ IH F +R    H V + 
Sbjct: 232 MGDMAVDMFFRM-LSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVR 290

Query: 296 NALIDMYSKCGSLDC-------------------------------ARRVFEDSSFNKDA 324
           ++++DMY+KCG++D                                A+RVFE     ++ 
Sbjct: 291 SSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMK-ERNL 349

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           ++W+++++GY        A+LL+ +M     + D IT+  VLSAC     I +G E++  
Sbjct: 350 VSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAF 409

Query: 385 VINT-YRIKPTTEICACVVDMLGRAGQL---DRALDFIKTMPVEPSPSIWGALVSASVMH 440
            I   +   P  +    +V M  + G L   +R L F   M  E     W +L+S    H
Sbjct: 410 AIKCGFFSSPILK--NALVRMYSKCGCLRSAERLLLF--EMGSERDSYSWNSLISGYERH 465

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
             SE    A  +L +++ E   N  + S+  A+
Sbjct: 466 SMSEA---ALYALTKMQSEVTPNQSTFSSALAA 495



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 10/213 (4%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCG--QPT 72
           +R + + T+   L        +   ++ H+  +  G  S+P +   L+  Y+ CG  +  
Sbjct: 379 TREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSA 438

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
           +  L+F     +D Y +NSLI+GY ++     AL   + M  S V+P+  T ++      
Sbjct: 439 ERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACA 497

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            I  L  GM IH   I+ G+ +D IL + L+ MY KC +F   + +F+  P R+V  WN 
Sbjct: 498 NIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNS 557

Query: 193 RISGHASS--GDFSLVVRSRRVFDQMKRRNVYA 223
            I G A S  G++ L      +FD+M+++ + A
Sbjct: 558 MIFGCAYSGKGEYGL-----DLFDEMQKQGIKA 585



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 40/89 (44%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LK   Q H+ ++  G+  +  + + LI  Y  C Q   S  +F +   +DV L+NS+I G
Sbjct: 502 LKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFG 561

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTL 124
              +      L+LF  M    +  D  T 
Sbjct: 562 CAYSGKGEYGLDLFDEMQKQGIKADSVTF 590


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 283/483 (58%), Gaps = 5/483 (1%)

Query: 45  QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
            +L  G   + FV    IT    CG+ + +  VFN  + +D+  +NS+I G VK     E
Sbjct: 183 HVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIE 242

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           A++++  M    V P++ T+  +     +++DLN+G   H    + G    + L N+LM 
Sbjct: 243 AIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMD 302

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MYVKCG+      LFD M Q+ + SW   + G+A    F  +  +R +  ++  ++V  W
Sbjct: 303 MYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYAR---FGFLDVAREILYKIPEKSVVPW 359

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            A+I+G VQ     EAL LF EMQ++  IEP+KV++V+ L  CS L  L  G  IH +  
Sbjct: 360 NAIISGCVQAKQGKEALALFHEMQIRT-IEPDKVTMVNCLSACSQLGALDVGIWIHHYIE 418

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R +L+ DV+L  AL+DMY+KCG++  A +VFE+    ++ +TW++++ G  LHG   +A+
Sbjct: 419 RHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP-QRNCLTWTAVICGLALHGNAQDAL 477

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
             ++KM+ +G  PD IT +GVLSAC   GL+ EG + ++ + + + + P  +  +C+VD+
Sbjct: 478 SYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDL 537

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           LGRAG L+ A + +K MP+    ++ GAL  A  ++GN ++ +     L++++P++  NY
Sbjct: 538 LGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNY 597

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           V L+++Y+ ++ W      R +M D+G++K+PGCS + I+G  H F V D +HP S  IY
Sbjct: 598 VLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQSEWIY 657

Query: 525 EML 527
           E L
Sbjct: 658 ECL 660



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 209/448 (46%), Gaps = 78/448 (17%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYL 88
           +SL   KQ  +Q++S G I N F +++L+   A C      +L     +   I+  +V+ 
Sbjct: 68  KSLVQLKQIQAQMVSTGLIENGFAASRLV---AFCALSESKELDYCTRILYRIKELNVFS 124

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
           +N+ I GYV++        L+  M     + PD+ T   + K         +G+ + G  
Sbjct: 125 WNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHV 184

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           +K GF  D+ + N+ ++M + CG+ S   ++F++   R++ +WN  I+            
Sbjct: 185 LKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMIT------------ 232

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
                                 G V+ G   EA+ ++ EM+  +++ PN+++++ ++ +C
Sbjct: 233 ----------------------GCVKRGLAIEAIKIYKEME-AEKVRPNEITMIGMISSC 269

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           S +  L+ GK+ H +     L   + L NAL+DMY KCG L  AR +F D+   K  ++W
Sbjct: 270 SQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLF-DNMAQKTLVSW 328

Query: 328 SSIVSGYGLHG-------------------------------KGHEAVLLYNKMVCLGSK 356
           +++V GY   G                               +G EA+ L+++M     +
Sbjct: 329 TTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIE 388

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD +T+V  LSAC + G ++ G+ I++  I  +++     +   +VDM  + G + RAL 
Sbjct: 389 PDKVTMVNCLSACSQLGALDVGIWIHH-YIERHKLSIDVALGTALVDMYAKCGNIARALQ 447

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSE 444
             + +P + +   W A++    +HGN++
Sbjct: 448 VFEEIP-QRNCLTWTAVICGLALHGNAQ 474


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 178/516 (34%), Positives = 289/516 (56%), Gaps = 36/516 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S TV   L   A  + +K+        L LG   + +V T LI+ ++ C     ++L+F 
Sbjct: 204 STTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFG 263

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I+  D+  YN+LI+G+  N     A++ F  +  S       T+  +  +S     L++
Sbjct: 264 MIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHL 323

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              I G  +K G ++   ++ +L ++Y +       LN  D                   
Sbjct: 324 ACCIQGFCVKSGTILQPSVSTALTTIYSR-------LNEID------------------- 357

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    +R++FD+   + V AW AMI+GY Q+G  + A+ LF EM +     PN V+
Sbjct: 358 --------LARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEM-MTTEFTPNPVT 408

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           + S+L  C+ L  LS GK +H     K L  ++ +  ALIDMY+KCG++  A ++F+ +S
Sbjct: 409 ITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTS 468

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             K+ +TW++++ GYGLHG G EA+ L+N+M+ LG +P  +T + VL AC  +GL+ EG 
Sbjct: 469 -EKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGD 527

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           EI+++++N YRI+P  E  AC+VD+LGRAGQL++AL+FI+ MPVEP P++WG L+ A ++
Sbjct: 528 EIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMI 587

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H ++ +  +A + L +L+P N   YV LSN+Y+  R +   A +R  +K R L K+PGC+
Sbjct: 588 HKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCT 647

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            I ++G  H F   D++H  + SIY  L++L   MR
Sbjct: 648 LIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMR 683



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 204/432 (47%), Gaps = 39/432 (9%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+  +  G  SN FV++ L+  Y    +   ++ VF+ +  +D  L+N++I G V+N  +
Sbjct: 126 HAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCY 185

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           ++++++F +M    V  D  T+AT+     E++++ VGM I  L++K+GF  D  +   L
Sbjct: 186 DDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGL 245

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           +S++ KC        LF  + + ++ S+N  ISG + +G+    V+             Y
Sbjct: 246 ISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVK-------------Y 292

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
               +++G                     R+  +  ++V ++P  S    L     I GF
Sbjct: 293 FRELLVSG--------------------QRVSSS--TMVGLIPVSSPFGHLHLACCIQGF 330

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            ++       S+  AL  +YS+   +D AR++F++SS  K    W++++SGY   G    
Sbjct: 331 CVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESS-EKTVAAWNAMISGYAQSGLTEM 389

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ L+ +M+     P+ +TI  +LSAC + G ++ G  ++  +I +  ++    +   ++
Sbjct: 390 AISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQ-LIKSKNLEQNIYVSTALI 448

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           DM  + G +  A      +  E +   W  ++    +HG  +     +  ++ L  + PS
Sbjct: 449 DMYAKCGNISEASQLFD-LTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQ-PS 506

Query: 463 NYVSLSNLYASS 474
           +   LS LYA S
Sbjct: 507 SVTFLSVLYACS 518



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 136/327 (41%), Gaps = 36/327 (11%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           LV+ +  +S+T+   + VS+    L L        +  G I  P VST L T Y+   + 
Sbjct: 297 LVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEI 356

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             ++ +F+    K V  +N++I+GY ++     A+ LF  M  +  +P+  T+ +I    
Sbjct: 357 DLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSAC 416

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
            ++  L+ G  +H L        ++ ++ +L+ MY KCG  SE   LFD   ++N  +WN
Sbjct: 417 AQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWN 476

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                                              MI GY  +G  DEAL LF EM L  
Sbjct: 477 T----------------------------------MIFGYGLHGYGDEALKLFNEM-LHL 501

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQI-HGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             +P+ V+ +SVL  CS    +  G +I H    +  +         ++D+  + G L+ 
Sbjct: 502 GFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEK 561

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLH 337
           A               W +++    +H
Sbjct: 562 ALEFIRKMPVEPGPAVWGTLLGACMIH 588


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 174/497 (35%), Positives = 279/497 (56%), Gaps = 42/497 (8%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K+ H  +   G   + F+ + L+  Y   G    +Q+ F  +  +DV L+N+++NGY + 
Sbjct: 76  KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 135

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
                 LE F  M   +V P  FT+  I  +   + DLN G +IHG ++K+G+   V ++
Sbjct: 136 GQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 195

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           NSL+ MY KC    + L                                   +F+ M+ +
Sbjct: 196 NSLIDMYGKCKCIEDAL----------------------------------EIFEMMREK 221

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           ++++W ++ + + Q GD D  L L L+  L   I+P+ V++ +VLP CS L  L  G++I
Sbjct: 222 DIFSWNSIXSVHEQCGDHDGTLRL-LDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREI 280

Query: 280 HGFAIRKELNHD------VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           HG+ I   L  D      V L NA+IDMY+KCGS+  A  VFE    NKD  +W+ ++ G
Sbjct: 281 HGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMX-NKDVASWNIMIMG 339

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG+HG G+EA+ ++++M  +  KPD +T VGVLSAC  +G +++G      + + Y + P
Sbjct: 340 YGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAP 399

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
           T E   CV+DMLGRAGQLD A +   TMP+E +P +W AL++A  +H ++ + ++A + +
Sbjct: 400 TIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRV 459

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
            +LEPE+  +YV +SN+Y +  R++ V E+R  M+ + ++K+PGCSWI +    H F  A
Sbjct: 460 FELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSA 519

Query: 514 DKAHPCSVSIYEMLDDL 530
           D+AHP + SIY  L+ L
Sbjct: 520 DRAHPEAYSIYAGLNSL 536



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 150/352 (42%), Gaps = 60/352 (17%)

Query: 1   MILSSAR--NTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVS 58
           M+L + R  N  ++V SR     TV   L V A    L   +  H   + +G+ S   VS
Sbjct: 140 MVLETFRRMNDESVVPSR----FTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVS 195

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
             LI  Y  C     +  +F  ++ KD++ +NS+ + + +   H+  L L   M  + + 
Sbjct: 196 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQ 255

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF------VVDVILANSLMSMYVKCGKF 172
           PD  T+ T+      +  L  G  IHG  I  G       + DV+L N+++ MY KCG  
Sbjct: 256 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 315

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            +   +F+ M  ++V SWN+                                  MI GY 
Sbjct: 316 RDAHLVFERMXNKDVASWNI----------------------------------MIMGYG 341

Query: 233 QNGDLDEALVLF---LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
            +G  +EAL +F    E+QLK    P++V+ V VL  CS    +S G+    F  + +  
Sbjct: 342 MHGYGNEALEMFSRMCEVQLK----PDEVTFVGVLSACSHAGFVSQGRN---FLAQMKSK 394

Query: 290 HDVSLC----NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +DV+        +IDM  + G LD A  +        + + W ++++   LH
Sbjct: 395 YDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLH 446



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MYSKC  ++ A  +F D +   +   +++I+SG+  +G   E    Y KM   G  PD  
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 361 TIVGVLSACGRSGLINEGLEI--YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
           T    + AC       + LEI   + ++  + ++    I + +V+   + G ++ A    
Sbjct: 61  TFPCAIKAC------LDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAF 114

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEM 445
           + +P+     +W A+V+     G  EM
Sbjct: 115 EELPIR-DVVLWNAMVNGYAQIGQFEM 140


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 175/500 (35%), Positives = 280/500 (56%), Gaps = 36/500 (7%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           T  +L   K  H+Q ++ G + +  V+T LI  Y  CG    ++ VF++++ +DV  +  
Sbjct: 271 TPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTV 330

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I GY +N    +A  LF+ M    + PD  T   I        +LN    IH      G
Sbjct: 331 MIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAG 390

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F  D++++ +L+ MY KCG   +                                  +R+
Sbjct: 391 FGTDLLVSTALVHMYAKCGAIKD----------------------------------ARQ 416

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VFD M RR+V +W+AMI  YV+NG   EA   F  M+ +  IEP+ V+ +++L  C  L 
Sbjct: 417 VFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMK-RSNIEPDGVTYINLLNACGHLG 475

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  G +I+  AI+ +L   V L NALI M +K GS++ AR +F D+   +D ITW++++
Sbjct: 476 ALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIF-DTMVRRDVITWNAMI 534

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            GY LHG   EA+ L+++M+    +P+ +T VGVLSAC R+G ++EG   +  ++    I
Sbjct: 535 GGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGI 594

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
            PT ++  C+VD+LGRAG+LD A   IK+MPV+P+ SIW +L+ A  +HGN ++ + A +
Sbjct: 595 VPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAE 654

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
             + ++P + + YV LS++YA++  W+ VA++R +M+ RG++K  GC+WI + GK H F 
Sbjct: 655 RCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFV 714

Query: 512 VADKAHPCSVSIYEMLDDLI 531
           V D++HP    IY  L  L+
Sbjct: 715 VEDRSHPLVGEIYAELARLM 734



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 208/452 (46%), Gaps = 41/452 (9%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T     Q     R   L KQ    I+  G   N +    LI  Y++CG  T+++ +F+
Sbjct: 57  SRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFD 116

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           S+++K V  +N+LI GY +     EA  LF  M    + P   T  ++         LN 
Sbjct: 117 SVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNW 176

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +H   +  GFV D  +  +L+SMYVK G   +   +FD +  R+V ++NV + G+A 
Sbjct: 177 GKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAK 236

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
           SGD+                                  ++A  LF  MQ +  ++PNK+S
Sbjct: 237 SGDW----------------------------------EKAFELFYRMQ-QVGLKPNKIS 261

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            +S+L  C +   L+ GK +H   +   L  D+ +  +LI MY+ CGS++ ARRVF++  
Sbjct: 262 FLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMK 321

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D ++W+ ++ GY  +G   +A  L+  M   G +PD IT + +++AC  S  +N   
Sbjct: 322 V-RDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAR 380

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           EI++ V +         +   +V M  + G +  A      MP     S W A++ A V 
Sbjct: 381 EIHSQV-DIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVS-WSAMIGAYVE 438

Query: 440 --HGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
             +G    +         +EP+  + Y++L N
Sbjct: 439 NGYGTEAFETFHLMKRSNIEPDGVT-YINLLN 469



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 145/318 (45%), Gaps = 36/318 (11%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  H +   A   +L   ++ HSQ+   G  ++  VST L+  YA CG    ++ VF+++
Sbjct: 362 TYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAM 421

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +DV  ++++I  YV+N    EA E F  M  SN+ PD  T   +    G +  L+VGM
Sbjct: 422 PRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGM 481

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            I+  +IK   V  V L N+L+ M  K G       +FD M +R+V +WN          
Sbjct: 482 EIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWN---------- 531

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   AMI GY  +G+  EAL LF  M LK+R  PN V+ V
Sbjct: 532 ------------------------AMIGGYSLHGNAREALYLFDRM-LKERFRPNSVTFV 566

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            VL  CS    +  G++   + +  + +   V L   ++D+  + G LD A  + +    
Sbjct: 567 GVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPV 626

Query: 321 NKDAITWSSIVSGYGLHG 338
              +  WSS++    +HG
Sbjct: 627 KPTSSIWSSLLVACRIHG 644


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 170/492 (34%), Positives = 270/492 (54%), Gaps = 36/492 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L+  +  H  I+ LG   + +    L+  Y+        + VF  +  KDV  YN++I G
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAG 180

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y ++  + +AL +   M  S++ PD FTL+++  +  E  D+  G  IHG  I+ G   D
Sbjct: 181 YAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSD 240

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V + +SL+ MY K  +  +                                  S RVF  
Sbjct: 241 VYIGSSLVDMYAKSARIED----------------------------------SERVFSH 266

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           + RR+  +W +++ GYVQNG  +EAL LF +M +  ++ P  V+  SV+P C+ L  L  
Sbjct: 267 LYRRDSISWNSLVAGYVQNGRYNEALRLFRQM-VSAKVRPGAVAFSSVIPACAHLATLHL 325

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GKQ+HG+ +R     ++ + +AL+DMYSKCG++  AR++F+  + + D ++W++I+ G+ 
Sbjct: 326 GKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLH-DEVSWTAIIMGHA 384

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           LHG GHEAV L+ +M   G KP+ +  V VL+AC   GL++E    +NS+   Y +    
Sbjct: 385 LHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQEL 444

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           E  A V D+LGRAG+L+ A DFI  M VEP+ S+W  L+S+  +H N E+ +   + +  
Sbjct: 445 EHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFT 504

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           ++ EN   YV + N+YAS+ RW  +A+LR  ++ +GL+K P CSWI +  KTH F   D+
Sbjct: 505 IDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDR 564

Query: 516 AHPCSVSIYEML 527
           +HP    I E L
Sbjct: 565 SHPSMDRINEFL 576



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 4/230 (1%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VF  ++   V AW ++I  +        AL  F+EM+   R  P+     SVL +C+ ++
Sbjct: 61  VFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRC-PDHNVFPSVLKSCTMMM 119

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  G+ +HGF +R  ++ D+   NAL++MYSK   +D  R+VFE     KD +++++++
Sbjct: 120 DLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMP-RKDVVSYNTVI 178

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           +GY   G   +A+ +  +M     KPD  T+  VL        + +G EI+  VI    I
Sbjct: 179 AGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRK-GI 237

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
                I + +VDM  ++ +++ +      +    S S W +LV+  V +G
Sbjct: 238 DSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSIS-WNSLVAGYVQNG 286


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 288/492 (58%), Gaps = 8/492 (1%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           SN FV    I  ++LCG    ++ +F+     +V  +N +++GY +   + E+  LF  M
Sbjct: 169 SNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEM 228

Query: 113 YY--SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILANSLMSMYVKC 169
                 VSP+  TL  +     ++KDL  G  I+   IK G V  ++IL N+L+ M+  C
Sbjct: 229 EKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASC 288

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           G+      +FDEM  R+V SW   ++G A++    L   +R+ FDQM  R+  +WTAMI+
Sbjct: 289 GEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDL---ARKYFDQMPERDYVSWTAMID 345

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           GY++     E L LF +MQ+ + ++P++ ++VS+L  C+ L  L  G+    +  + ++ 
Sbjct: 346 GYLRMNRFKEVLTLFRDMQMSN-VKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIK 404

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
           +D  + NALIDMY KCG+++ A+++F +    KD  TW++++ G   +G G EA+ +++ 
Sbjct: 405 NDTFIGNALIDMYFKCGNVEKAKKIFNEMQ-KKDKFTWTAMIVGLANNGHGEEALTMFSY 463

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M+     PD IT +GV+ AC   GL+ +G   ++++   + IKP      C+VD+LGRAG
Sbjct: 464 MLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAG 523

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
            L  AL+ I  MPV+P+  +WG+L+ A  +H N ++ ++A   +++LEPEN + YV L N
Sbjct: 524 HLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCN 583

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
           +YA+ ++W  +  +R MM +RG+KK PGCS + ++G  + F   DK+HP S  IY  L++
Sbjct: 584 IYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLEN 643

Query: 530 LILIMRGAAASP 541
           +   +  A  SP
Sbjct: 644 MKQDLSNAGYSP 655



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 195/444 (43%), Gaps = 81/444 (18%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALC-----GQPTQSQLVFNSIQHKDVYLYNSLING 95
           Q HSQ +  G  SN    TK+I     C     G    ++ VF+ I    V+++N++I G
Sbjct: 53  QIHSQTIKTGLSSNHLFLTKVII---FCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKG 109

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD--LNVGMLIHGLSIKIGFV 153
           Y + +     + L+  M   N+ PD FT   +  L G  KD  L  G ++   ++  GF+
Sbjct: 110 YSRINCSESGVSLYKLMLVHNIKPDGFTFPFL--LKGFTKDMALKYGKVLLNHAVIHGFL 167

Query: 154 -VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             ++ +    + ++  CG  +    +FD      V +WNV +SG                
Sbjct: 168 DSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSG---------------- 211

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK-DRIEPNKVSLVSVLPTCSSLI 271
           +++ KR                   +E+  LF+EM+ K + + PN V+LV +L  CS L 
Sbjct: 212 YNRFKR------------------YEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLK 253

Query: 272 GLSGGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFE-------------- 316
            L GGK I+   I++ +   ++ L NALIDM++ CG +D AR VF+              
Sbjct: 254 DLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIV 313

Query: 317 ----------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
                           D    +D ++W++++ GY    +  E + L+  M     KPD  
Sbjct: 314 TGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEF 373

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+V +L+AC   G +  G E   + I+  +IK  T I   ++DM  + G +++A      
Sbjct: 374 TMVSILTACAHLGALELG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNE 432

Query: 421 MPVEPSPSIWGALVSASVMHGNSE 444
           M  +     W A++     +G+ E
Sbjct: 433 MQ-KKDKFTWTAMIVGLANNGHGE 455


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 181/536 (33%), Positives = 288/536 (53%), Gaps = 40/536 (7%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQ---SQLVFNSIQHKDVYLYNSLINGYV 97
           Q H+ I+      N FV  KL+     C        ++ VF+ I   D +++N++I  Y+
Sbjct: 21  QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYL 80

Query: 98  KNHGHNEALELFSNMYYSNVSP-DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            +    E++ LF  M +    P D ++L+ + +  G +KD   G  +H   +KIG   D+
Sbjct: 81  NSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDL 140

Query: 157 ILANSLMSMY-------------------------------VKCGKFSECLNLFDEMPQR 185
            +  +L+ MY                               V+ G+ +   +LFD MP+R
Sbjct: 141 FVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPER 200

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
           ++ SWN  I GHAS GD   V  ++++FD+   R++ +W++MI  Y +    +EAL LF 
Sbjct: 201 DLVSWNTMIHGHASLGD---VGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFH 257

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
           EMQL + + P+KV++VSVL  C  +  L  GK IH    R  +  D+ L  +L+DMY+KC
Sbjct: 258 EMQLAN-VLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKC 316

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           G +D + RVF   + N+D   WS+++ G   HG G  A+  ++KM+    KP+ +T +GV
Sbjct: 317 GDIDNSLRVFNGMN-NRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGV 375

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           LSAC   GL++EG   + S+   Y + P  E   CVVD+LGRAG+L  A++ IK+MP  P
Sbjct: 376 LSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAP 435

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485
              +W AL+ A  ++ N E+ + A  +L++LEP    NYV LSN+Y+ ++ WD V  +R 
Sbjct: 436 DAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRR 495

Query: 486 MMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           MMK+  ++K PG S I +    H F   D++HP S  I  ML ++   ++    +P
Sbjct: 496 MMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAP 551



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 152/402 (37%), Gaps = 101/402 (25%)

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL---NLFDEMPQRNVGSWNVR 193
           LN  + IH L IK     +  +   L+     C   ++ L   ++FDE+P  +   WN  
Sbjct: 16  LNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWN-- 73

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                                            MI  Y+ + +  E++ LF +M+ ++ I
Sbjct: 74  --------------------------------TMIRAYLNSQNPQESMSLFFQMRHQECI 101

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
             +  SL  V+  C  L     G+++H   ++  L  D+ +  ALI+MY+K G ++ AR 
Sbjct: 102 PIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARN 161

Query: 314 VFE------------------------------DSSFNKDAITW---------------- 327
           + +                              D    +D ++W                
Sbjct: 162 ILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTA 221

Query: 328 ---------------SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
                          SS+++ Y    + +EA+ L+++M      PD +T+V VLSACG  
Sbjct: 222 KKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDV 281

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           G +  G  I+   I   RI+   ++   +VDM  + G +D +L     M      + W A
Sbjct: 282 GALGMGKMIH-ECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFA-WSA 339

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           ++     HG  E+    +  +I  E   P++   +  L A S
Sbjct: 340 MIMGLANHGFGELALDHFSKMIS-EDIKPNDVTFIGVLSACS 380


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 170/496 (34%), Positives = 287/496 (57%), Gaps = 14/496 (2%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H+ +L  G   +P ++ KL  +YA  G    S  +F+   + +V+L+  +IN +    
Sbjct: 41  QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
             + AL  +S M    + P+ FTL+++ K       L+    +H  +IK G    + ++ 
Sbjct: 101 LFHHALSYYSQMLTHPIQPNAFTLSSLLKAC----TLHPARAVHSHAIKFGLSSHLYVST 156

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
            L+  Y + G  +    LFD MP+R++ S+   ++ +A  G   ++  +R +F+ M  ++
Sbjct: 157 GLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHG---MLPEARVLFEGMGMKD 213

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKD------RIEPNKVSLVSVLPTCSSLIGLS 274
           V  W  MI+GY Q+G  +EALV F +M +        ++ PN++++V+VL +C  +  L 
Sbjct: 214 VVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALE 273

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK +H +     +  +V +  AL+DMY KCGSL+ AR+VF D    KD + W+S++ GY
Sbjct: 274 CGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVF-DVMEGKDVVAWNSMIMGY 332

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           G+HG   EA+ L+++M C+G KP  IT V VL+AC  +GL+++G E+++S+ + Y ++P 
Sbjct: 333 GIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPK 392

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+V++LGRAG++  A D +++M VEP P +WG L+ A  +H N  + +   + L+
Sbjct: 393 VEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILV 452

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
                +   YV LSN+YA++R W  VA++R+MMK  G++K PGCS I +  + H F   D
Sbjct: 453 SNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGD 512

Query: 515 KAHPCSVSIYEMLDDL 530
           + HP S  IY ML+ +
Sbjct: 513 RRHPRSKDIYSMLEKM 528


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 177/485 (36%), Positives = 270/485 (55%), Gaps = 14/485 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS------QLVFNSIQHKDVYLYNSLI 93
           KQ H+++L  G + + +  TK ++    C   T S      Q+VF+     D +L+N +I
Sbjct: 31  KQIHARMLKTGLMQDSYAITKFLS---FCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 87

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            G+  +     +L L+  M  S+   + +T  ++ K    +        IH    K+G+ 
Sbjct: 88  RGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYE 147

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV   NSL++ Y   G F     LFD +P+ +  SWN  I G+  +G   + +    +F
Sbjct: 148 NDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALT---LF 204

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
            +M  +N  +WT MI+GYVQ     EAL LF EMQ  D +EP+ VSL + L  C+ L  L
Sbjct: 205 RKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD-VEPDNVSLANALSACAQLGAL 263

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GK IH +  +  +  D  L   LIDMY+KCG ++ A  VF++    K    W++++SG
Sbjct: 264 EQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK-KKSVQAWTALISG 322

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y  HG G EA+  + +M  +G KP++IT   VL+AC  +GL+ EG  I+ S+   Y +KP
Sbjct: 323 YAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKP 382

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
           T E   C+VD+LGRAG LD A  FI+ MP++P+  IWGAL+ A  +H N E+ +   + L
Sbjct: 383 TIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEIL 442

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           I ++P +   YV  +N++A  ++WD  AE R +MK++G+ K PGCS IS+ G TH F   
Sbjct: 443 IAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAG 502

Query: 514 DKAHP 518
           D++HP
Sbjct: 503 DRSHP 507



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 69/359 (19%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L +S  + + T    L+  +   + + T Q H+QI  LG+ ++ +    LI +YA+ G  
Sbjct: 107 LCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNF 166

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHG------------------------------ 101
             + L+F+ I   D   +NS+I GYVK                                 
Sbjct: 167 KLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQAD 226

Query: 102 -HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
            + EAL+LF  M  S+V PD+ +LA       ++  L  G  IH    K    +D +L  
Sbjct: 227 MNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGC 286

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
            L+ MY KCG+  E L +F  + +++V +W   IS                         
Sbjct: 287 VLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALIS------------------------- 321

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
                    GY  +G   EA+  F+EMQ K  I+PN ++  +VL  CS    +  GK I 
Sbjct: 322 ---------GYAYHGHGREAISKFMEMQ-KMGIKPNVITFTAVLTACSYTGLVEEGKLIF 371

Query: 281 GFAIRKELNHDVSLCN--ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            +++ ++ N   ++ +   ++D+  + G LD A+R  ++     +A+ W +++    +H
Sbjct: 372 -YSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH 429


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 288/560 (51%), Gaps = 83/560 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           ++ + L   A+ ++L   K+ HS  +  G  ++ FV   LI  YA CG    +  VFN +
Sbjct: 261 SIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVM 320

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV------------------------ 117
           + KDV  +N+++ GY ++     A ELF NM   N+                        
Sbjct: 321 EFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEAL 380

Query: 118 -----------SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV------------V 154
                       P+  T+ ++      +  L+ GM IH  S+K   +             
Sbjct: 381 DAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+++ N+L+ MY KC  F    ++FD +P+R                             
Sbjct: 441 DLMVYNALIDMYSKCRSFKAARSIFDSIPRR----------------------------- 471

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGL 273
               RNV  WT MI GY Q GD ++AL +F EM  K   + PN  ++  +L  C+ L  L
Sbjct: 472 ---ERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAAL 528

Query: 274 SGGKQIHGFAIRK-ELNHDVS-LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
             GKQIH +  R  E    V  + N LIDMYSKCG +D AR VF DS   ++ ++W+S++
Sbjct: 529 RMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVF-DSMPKRNEVSWTSMM 587

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           SGYG+HG+G EA+ +++KM   G  PD I+ + +L AC  SG++++GL  ++ +   Y +
Sbjct: 588 SGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDV 647

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
             + E  ACV+D+L R G+LD+A   I+ MP+EPS  IW AL+SA  +H N E+ + A  
Sbjct: 648 VASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALN 707

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            L+ ++ EN  +Y  +SN+YA++RRW  VA +R +MK  G+KK PGCSW+     T  F 
Sbjct: 708 KLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFF 767

Query: 512 VADKAHPCSVSIYEMLDDLI 531
           V D++HP S  IY +L+ LI
Sbjct: 768 VGDRSHPLSPEIYSLLERLI 787



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 139/452 (30%), Positives = 225/452 (49%), Gaps = 34/452 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L+      S    +  H  I   G  SN FV   L+  Y+ CG    + LVF+ I
Sbjct: 151 TLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEI 210

Query: 82  QHK---DVYLYNSLINGYVKNHGHNEALELFSNMYY------SNVSPDDFTLATISKLSG 132
             K   DV  +NS++  +VK      ALELFS M        +N   D  ++  I     
Sbjct: 211 TRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACA 270

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +K L     IH  +I+ G   D  + N+L+  Y KCG  ++ + +F+ M  ++V SWN 
Sbjct: 271 SLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNA 330

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRN----VYAWTAMINGYVQNGDLDEALVLFLEMQ 248
            ++G+  SG+F        +F+ M++ N    V  W+A+I GY Q G   EAL  F +M 
Sbjct: 331 MVTGYTQSGNFGAAF---ELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMI 387

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL------------NHDVSLCN 296
           L D  EPN V+++S+L  C+SL  LS G +IH ++++K L              D+ + N
Sbjct: 388 L-DGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYN 446

Query: 297 ALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC--L 353
           ALIDMYSKC S   AR +F+      ++ +TW+ ++ GY  +G  ++A+ ++++M+    
Sbjct: 447 ALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPY 506

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA-CVVDMLGRAGQLD 412
              P+  TI  +L AC     +  G +I+  V   +  +P+    A C++DM  + G +D
Sbjct: 507 AVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVD 566

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            A +   +MP     S W +++S   MHG  +
Sbjct: 567 TARNVFDSMPKRNEVS-WTSMMSGYGMHGRGK 597



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 182/417 (43%), Gaps = 90/417 (21%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLG--------------------HISNPFVSTKLITA 64
           HF  +    RS+   +Q H +I++ G                    ++S   + T ++ +
Sbjct: 33  HFASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVAS 92

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y  CG    +  V   +       +N L+  ++K    + A+ +   M  +   PD FTL
Sbjct: 93  YLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTL 152

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
               K  GE+     G  +HGL    GF  +V + N+L++MY +CG   +   +FDE+ +
Sbjct: 153 PYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITR 212

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           + +                                +V +W +++  +V+  +   AL LF
Sbjct: 213 KGID-------------------------------DVISWNSIVAAHVKGSNPRTALELF 241

Query: 245 LEMQL-----KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
            EM +           + +S+V++LP C+SL  L   K+IH +AIR     D  +CNALI
Sbjct: 242 SEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALI 301

Query: 300 DMYSKCGSLDCARRVFEDSSFNK----------------------------------DAI 325
           D Y+KCGS++ A +VF    F                                    D I
Sbjct: 302 DTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVI 361

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           TWS++++GY   G   EA+  + +M+  GS+P+ +TI+ +LSAC   G +++G+EI+
Sbjct: 362 TWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIH 418



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 11/227 (4%)

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           W  ++  +++ G LD A+ +   M L+   +P+  +L   L  C  L     G+ +HG  
Sbjct: 117 WNLLVREHIKEGHLDRAIGVSCRM-LRAGTKPDHFTLPYALKACGELPSYCCGRALHGLI 175

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN--KDAITWSSIVSGYGLHGKGH 341
                  +V +CNAL+ MYS+CGSL+ A  VF++ +     D I+W+SIV+ +       
Sbjct: 176 CCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPR 235

Query: 342 EAVLLYNKMVCL------GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            A+ L+++M  +        + DII+IV +L AC     + +  EI++  I         
Sbjct: 236 TALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAF 295

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            +C  ++D   + G ++ A+     M  +   S W A+V+     GN
Sbjct: 296 -VCNALIDTYAKCGSMNDAVKVFNVMEFKDVVS-WNAMVTGYTQSGN 340



 Score = 38.9 bits (89), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 10/201 (4%)

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           SL   ++  Y  CG+   A  V E  +    A+ W+ +V  +   G    A+ +  +M+ 
Sbjct: 84  SLGTGVVASYLACGATKDALSVLERVT-PSPAVWWNLLVREHIKEGHLDRAIGVSCRMLR 142

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G+KPD  T+   L ACG       G  ++  +I     +    +C  +V M  R G L+
Sbjct: 143 AGTKPDHFTLPYALKACGELPSYCCGRALHG-LICCNGFESNVFVCNALVAMYSRCGSLE 201

Query: 413 RA---LDFIKTMPVEPSPSIWGALVSASVMHGN--SEMQDLAYKSLIQLEP--ENPSNYV 465
            A    D I    ++   S W ++V+A V   N  + ++  +  S+I  E      S+ +
Sbjct: 202 DASLVFDEITRKGIDDVIS-WNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDII 260

Query: 466 SLSNLYASSRRWDAVAELRTM 486
           S+ N+  +     A+ +++ +
Sbjct: 261 SIVNILPACASLKALPQIKEI 281


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 291/560 (51%), Gaps = 83/560 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           ++ + L   A+ ++L  TK+ HS  +  G  ++ FV   LI  YA CG    +  VFN +
Sbjct: 261 SIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVM 320

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV------------------------ 117
           + KDV  +N+++ GY ++     A ELF NM   N+                        
Sbjct: 321 EFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEAL 380

Query: 118 -----------SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV------------V 154
                       P+  T+ ++      +  L+ GM  H  S+K   +             
Sbjct: 381 DTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+++ N+L+ MY KC  F     +F+ +P+R                             
Sbjct: 441 DLVVHNALIDMYSKCRSFKAARTIFNSIPRR----------------------------- 471

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGL 273
               RNV  WT MI GY Q GD ++AL LF EM  K   + PN  ++  +L  C+ L  L
Sbjct: 472 ---ERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSL 528

Query: 274 SGGKQIHGFAIRK-ELNHDVS-LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
             GKQIH +  R  E    V  + N LIDMYSKCG +D AR VF DS   ++ ++W+S++
Sbjct: 529 RMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVF-DSMPKRNEVSWTSMM 587

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           SGYG+HG+G EA+ +++KM   G  PD I+ + +L AC  SG++++GL+ ++ + + Y +
Sbjct: 588 SGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGV 647

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
             + +  ACV+D+L R+G+LD+A   I+ MP+EPS +IW AL+SA  +H N E+ + A  
Sbjct: 648 IASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALN 707

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            L+ ++ EN  +Y  +SN+YA++RRW  VA +R +MK  G+KK PGCSW+     T  F 
Sbjct: 708 KLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFF 767

Query: 512 VADKAHPCSVSIYEMLDDLI 531
           V D++HP S  IY +L+ LI
Sbjct: 768 VGDRSHPLSPEIYSLLERLI 787



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/452 (30%), Positives = 218/452 (48%), Gaps = 34/452 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L+      S +     H  I   G  SN FV   L+  Y+  G    + LVF+ I
Sbjct: 151 TLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEI 210

Query: 82  QHK---DVYLYNSLINGYVKNHGHNEALELFSNMYY------SNVSPDDFTLATISKLSG 132
             K   DV  +NS++  +VK      AL+LFS M        +N   D  ++  I     
Sbjct: 211 TRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACA 270

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +K L     IH  +I+ G   D  + N+L+  Y KCG   + +N+F+ M  ++V SWN 
Sbjct: 271 SLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNA 330

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRN----VYAWTAMINGYVQNGDLDEALVLFLEMQ 248
            ++G+  SG F        +F  M++ N    V  W+A+I GY Q G   EAL  F +M 
Sbjct: 331 MVTGYTQSGKFGAAF---ELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMI 387

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL------------NHDVSLCN 296
           L    EPN V+++S+L  C+SL  LS G + H ++++K L              D+ + N
Sbjct: 388 LYGS-EPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHN 446

Query: 297 ALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC--L 353
           ALIDMYSKC S   AR +F       ++ +TW+ ++ GY  +G  ++A+ L+++M+    
Sbjct: 447 ALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPY 506

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA-CVVDMLGRAGQLD 412
              P+  TI  +L AC     +  G +I+  V   +  + +    A C++DM  + G +D
Sbjct: 507 AVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVD 566

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            A +   +MP     S W +++S   MHG  +
Sbjct: 567 TARNVFDSMPKRNEVS-WTSMMSGYGMHGRGK 597



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 181/417 (43%), Gaps = 90/417 (21%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNP---------------FVSTK-----LITA 64
           HF  +    RS+   +Q H +I++ G +S P               +VS K     ++ +
Sbjct: 33  HFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVAS 92

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y  CG  + +  V   +       +N L+  +++    + A+ +   M  +   PD FTL
Sbjct: 93  YLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTL 152

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
               K  GE+     G   HGL    GF  +V + N+L++MY + G   +   +FDE+ +
Sbjct: 153 PYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITR 212

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           + +                                +V +W +++  +V+  +   AL LF
Sbjct: 213 KGID-------------------------------DVISWNSIVAAHVKGSNPRTALDLF 241

Query: 245 LEM-----QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
            EM     +       + +S+V++LP C+SL  L   K+IH +AIR     D  +CNALI
Sbjct: 242 SEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALI 301

Query: 300 DMYSKCGSLDCARRVFEDSSFNK----------------------------------DAI 325
           D Y+KCGS+  A  VF    F                                    D I
Sbjct: 302 DTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVI 361

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           TWS++++GY   G G EA+  + +M+  GS+P+ +TI+ +LSAC   G +++G+E +
Sbjct: 362 TWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETH 418



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 11/227 (4%)

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           W  ++  +++ G LD A+ +   M L+   +P+  +L   L  C  L     G   HG  
Sbjct: 117 WNLLVRAHIEEGRLDRAIGVSCRM-LRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLI 175

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN--KDAITWSSIVSGYGLHGKGH 341
                  +V +CNAL+ MYS+ GSL+ A  VF++ +     D I+W+SIV+ +       
Sbjct: 176 CCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPR 235

Query: 342 EAVLLYNKMVCL------GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            A+ L+++M  +        + DII+IV +L AC     + +  EI++  I         
Sbjct: 236 TALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAF 295

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            +C  ++D   + G +  A++    M  +   S W A+V+     G 
Sbjct: 296 -VCNALIDTYAKCGSMKDAVNVFNVMEFKDVVS-WNAMVTGYTQSGK 340



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 96/239 (40%), Gaps = 18/239 (7%)

Query: 6   ARNTFALVTSRNYTSA----TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNP--FVST 59
           A   F+ + S+ Y  A    T+   L   A   SL++ KQ H+ +       +   FV+ 
Sbjct: 494 ALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVAN 553

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            LI  Y+ CG    ++ VF+S+  ++   + S+++GY  +    EAL++F  M  +   P
Sbjct: 554 CLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVP 613

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSI------KIGFVVDVILANSLMSMYVKCGKFS 173
           DD +   +          + GM+  GL          G +        ++ +  + G+  
Sbjct: 614 DDISFLVLLYACS-----HSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLD 668

Query: 174 ECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
           +      EMP + +   W   +S      +  L   +      MK  N  ++T + N Y
Sbjct: 669 KAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIY 727



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 16/179 (8%)

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           SL   ++  Y  CG+   A  V E       A+ W+ +V  +   G+   A+ +  +M+ 
Sbjct: 84  SLGTGVVASYLACGATSDALSVLE-RVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLR 142

Query: 353 LGSKPDIITIVGVLSACG-----RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            G+KPD  T+   L ACG     RSG    GL   N        +    +C  +V M  R
Sbjct: 143 AGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNG------FESNVFVCNALVAMYSR 196

Query: 408 AGQLDRA---LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           +G L+ A    D I    ++   S W ++V+A V   N       +  +  +  E  +N
Sbjct: 197 SGSLEDASLVFDEITRKGIDDVIS-WNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATN 254


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 180/527 (34%), Positives = 289/527 (54%), Gaps = 39/527 (7%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           N+T A V   L+     ++    K  H  +L   +  + +V   L+  Y  CG    +  
Sbjct: 147 NFTFAGV---LKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWR 203

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
            F  +   DV  ++ +I+ + ++    +ALE+F  M  + V P+ FT +++ + S +I+ 
Sbjct: 204 AFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIES 263

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L++   IHG ++K G   DV ++N+LM+ Y KCG   + + LF+ +  R           
Sbjct: 264 LDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDR----------- 312

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                  N  +W  +I  YVQ GD + AL LF  M L+ +++  
Sbjct: 313 -----------------------NDVSWNTIIVSYVQLGDGERALSLFSNM-LRYQVQAT 348

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           +V+  S+L  C++L  L  G Q+H    +     DV++ NALIDMY+KCGS+  AR +F+
Sbjct: 349 EVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFD 408

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
                +D ++W++I+ GY +HG G EA+ ++N M     KPD +T VGVLSAC  +G ++
Sbjct: 409 MLDL-RDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLD 467

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EG + + S+   Y I+P  E   C+V ++GR+G LD+A+ FI+ +P EPS  IW AL+ A
Sbjct: 468 EGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGA 527

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
            V+H + E+  ++ + +++LEP + +++V LSN+YA +RRW  VA +R  MK +G+KK P
Sbjct: 528 CVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEP 587

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           G SWI   G  HCF+VAD +H     I  ML+ L +  R A  SP L
Sbjct: 588 GLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQL 634



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/435 (22%), Positives = 184/435 (42%), Gaps = 75/435 (17%)

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
           +VF+ +  ++   + +LI+GY +++   EA ELF+ ++      + F   T+ KL   ++
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
              +G ++HG  +K+G+  +  +  +L+  Y   G  S    +FDE+  +++ SW   I+
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 196 GHASSGDFSLVVRSRRVFDQMK-------------------------------------- 217
            +A +  FS    +   F QM+                                      
Sbjct: 121 SYAENDCFS---EALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTN 177

Query: 218 -RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE---------------------- 254
             R++Y    ++  Y + GD D+A   F +M   D I                       
Sbjct: 178 YERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFC 237

Query: 255 --------PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
                   PN+ +  SVL   + +  L   K IHG A++  L+ DV + NAL+  Y+KCG
Sbjct: 238 QMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCG 297

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
            ++ +  +FE  S +++ ++W++I+  Y   G G  A+ L++ M+    +   +T   +L
Sbjct: 298 CIEQSMELFEALS-DRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSIL 356

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
            AC     +  GL+++     T   +    +   ++DM  + G +  A      + +   
Sbjct: 357 RACATLAALELGLQVHCLTAKTIYGQDVA-VGNALIDMYAKCGSIKDARFMFDMLDLRDK 415

Query: 427 PSIWGALVSASVMHG 441
            S W A++    MHG
Sbjct: 416 VS-WNAIICGYSMHG 429



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 152/331 (45%), Gaps = 45/331 (13%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
           A V    +T ++V   LQ SA   SL L+K  H   L  G  ++ FVS  L+  YA CG 
Sbjct: 242 AFVIPNQFTFSSV---LQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGC 298

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
             QS  +F ++  ++   +N++I  YV+      AL LFSNM    V   + T ++I + 
Sbjct: 299 IEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRA 358

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
              +  L +G+ +H L+ K  +  DV + N+L+ MY KCG   +   +FD +  R+  SW
Sbjct: 359 CATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSW 418

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           N  I G++  G   L V + ++F+ MK                                +
Sbjct: 419 NAIICGYSMHG---LGVEAIKMFNLMK--------------------------------E 443

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC----NALIDMYSKCG 306
            + +P++++ V VL  CS+   L  GKQ   F   K+ ++ +  C      ++ +  + G
Sbjct: 444 TKCKPDELTFVGVLSACSNTGRLDEGKQY--FTSMKQ-DYGIEPCMEHYTCMVWLMGRSG 500

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +LD A +  ED  F    + W +++    +H
Sbjct: 501 NLDQAVKFIEDIPFEPSVMIWRALLGACVIH 531


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/495 (35%), Positives = 274/495 (55%), Gaps = 36/495 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L++ ++ H +I   G    P V T L+  YA CG  +++Q++F+ +  K+V  +  LI G
Sbjct: 213 LQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAG 272

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y +    + ALEL   M  + V+P+  T  +I +       L  G  +H   I+ G+  +
Sbjct: 273 YAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGRE 332

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + + N+L++MY KCG   E   LF ++P                                
Sbjct: 333 IWVVNALITMYCKCGGLKEARKLFGDLPH------------------------------- 361

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
              R+V  WTAM+ GY Q G  DEA+ LF  MQ +  I+P+K++  S L +CSS   L  
Sbjct: 362 ---RDVVTWTAMVTGYAQLGFHDEAIDLFRRMQ-QQGIKPDKMTFTSALTSCSSPAFLQE 417

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK IH   +    + DV L +AL+ MY+KCGS+D AR VF   S  ++ + W+++++G  
Sbjct: 418 GKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMS-ERNVVAWTAMITGCA 476

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            HG+  EA+  + +M   G KPD +T   VLSAC   GL+ EG + + S+   Y IKP  
Sbjct: 477 QHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMV 536

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           E  +C VD+LGRAG L+ A + I TMP +P PS+WGAL+SA  +H + E  + A +++++
Sbjct: 537 EHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLK 596

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           L+P++   YV+LSN+YA++ R++   ++R +M+ R + K PG SWI + GK H F V DK
Sbjct: 597 LDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDK 656

Query: 516 AHPCSVSIYEMLDDL 530
           +HP +  IY  L  L
Sbjct: 657 SHPEAKEIYAELGKL 671



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 139/318 (43%), Gaps = 38/318 (11%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    LQ   T  +L+  K+ H  I+  G+    +V   LIT Y  CG   +++ +F  +
Sbjct: 300 TYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDL 359

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            H+DV  + +++ GY +   H+EA++LF  M    + PD  T  +          L  G 
Sbjct: 360 PHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGK 419

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH   +  G+ +DV L ++L+SMY KCG   +   +F++M +RNV +W   I+G A   
Sbjct: 420 SIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCA--- 476

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                          Q+G   EAL  F +M+ K  I+P+KV+  
Sbjct: 477 -------------------------------QHGRCREALEYFEQMK-KQGIKPDKVTFT 504

Query: 262 SVLPTCSSLIGL--SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           SVL  C+  +GL   G K      +   +   V   +  +D+  + G L+ A  V     
Sbjct: 505 SVLSACTH-VGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMP 563

Query: 320 FNKDAITWSSIVSGYGLH 337
           F      W +++S   +H
Sbjct: 564 FQPGPSVWGALLSACRIH 581



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 85/198 (42%), Gaps = 14/198 (7%)

Query: 317 DSSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
           ++ F K D +  S  VS     G+  EA+ + N M+  G++       G+L  C R   +
Sbjct: 53  NAGFRKVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSL 112

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD---RALDFIKTMPVEPSPSIWGA 432
            +G E++ +++ +  I+P   +   ++ M  + G L    R  D I+   +      W A
Sbjct: 113 EQGREVHAAILKS-GIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVS----WTA 167

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSN--YVSLSNLYASSRRWDAVAELRTMMKDR 490
           ++ A V  GN  ++       ++L    P    +VSL N + +        ++   +   
Sbjct: 168 MIEAFVA-GNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKA 226

Query: 491 GLKKSP--GCSWISIHGK 506
           GL+  P  G S + ++ K
Sbjct: 227 GLELEPRVGTSLVGMYAK 244


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 184/525 (35%), Positives = 295/525 (56%), Gaps = 43/525 (8%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYAL---CGQPTQSQLVFNSIQ-HKDVYLYNSLINGY 96
           Q H+ ++    I   +   +L+ ++A     G    +Q +F+++   ++ ++Y ++I  Y
Sbjct: 49  QLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAY 108

Query: 97  VKNHGHNEALELFSNMYYSN--VSPDDFTLATI----SKLSG--EIKDLNVGML------ 142
                  EA   +S M      V P+DFT   +    SK +G  E K  +  M+      
Sbjct: 109 ANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEF 168

Query: 143 ----------IHGLSIKIGFVV----------DVILANSLMSMYVKCGKFSECLNLFDEM 182
                      +G   ++G VV          DV+  N L++ YVK G   E   LFDEM
Sbjct: 169 GVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEM 228

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P+R+V SW + + G+A +G  S    +  +FD+M +RN+ +W+A+I GY+Q G   +AL 
Sbjct: 229 PERDVVSWTIMLVGYADAGFLS---EASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALE 285

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302
           LF EMQ+  +++ ++V + ++L  C+ L  L  G+ +H +  +  +  D  L  ALIDMY
Sbjct: 286 LFKEMQVA-KVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMY 344

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362
           SKCG +D A +VF+++  +K    WSS++ G  +H  G +A+ L+ KM+  G +P  IT 
Sbjct: 345 SKCGRIDMAWKVFQETG-DKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITY 403

Query: 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
           + +L+AC  SGL++ GL+I+N ++   + KP  +   C+VD+LGRAG L  A   ++TMP
Sbjct: 404 INILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMP 463

Query: 423 VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482
           V+  P+IW AL+SA  +H N E+ +   + LI++EP+N  NYV  SN+YA+  RWD   +
Sbjct: 464 VKADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGK 523

Query: 483 LRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           LR  MK RG++K+PGCS I ++G  H F   D +HP S  IYE+L
Sbjct: 524 LRREMKVRGMQKNPGCSSIELNGAVHEFVSRDHSHPQSQVIYELL 568


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/503 (35%), Positives = 282/503 (56%), Gaps = 37/503 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K  H +IL  G   + F    L+  Y        +  +F+ +  ++   + +LI GY ++
Sbjct: 58  KGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAES 117

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               EA+ELF  ++   V P+ FT A++ +    ++ LN+G  IH   IKIG   DV ++
Sbjct: 118 VRFLEAIELFVRLH-REVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVS 176

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+LM +Y KCG+    + LF E P RN               D +               
Sbjct: 177 NALMDVYAKCGRMENSMELFAESPHRN---------------DVT--------------- 206

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
               W  +I G+VQ GD ++AL LFL M L+ R++  +V+  S L  C+SL  L  G QI
Sbjct: 207 ----WNTVIVGHVQLGDGEKALRLFLNM-LEYRVQATEVTYSSALRACASLAALEPGLQI 261

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H   ++   + D+ + NALIDMY+KCGS+  AR VF D    +D ++W++++SGY +HG 
Sbjct: 262 HSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVF-DLMNKQDEVSWNAMISGYSMHGL 320

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           G EA+ +++KM     KPD +T VGVLSAC  +GL+++G   + S+I  + I+P  E   
Sbjct: 321 GREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYT 380

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+V +LGR G LD+A+  I  +P +PS  +W AL+ A V+H + E+  ++ + ++++EP+
Sbjct: 381 CMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQ 440

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           + + +V LSN+YA+++RWD VA +R  MK +G+KK PG SWI   G  H F+V D +HP 
Sbjct: 441 DKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPE 500

Query: 520 SVSIYEMLDDLILIMRGAAASPH 542
              I  ML+ L +  + A   P+
Sbjct: 501 VRVINGMLEWLHMKTKKAGYIPN 523



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 151/329 (45%), Gaps = 45/329 (13%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V    +T A+V   LQ  AT   L L  Q H  ++ +G  S+ FVS  L+  YA CG+  
Sbjct: 134 VLPNQFTFASV---LQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRME 190

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            S  +F    H++   +N++I G+V+     +AL LF NM    V   + T ++  +   
Sbjct: 191 NSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 250

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +  L  G+ IH L++K  F  D+++ N+L+ MY KCG   +   +FD M +++  SWN 
Sbjct: 251 SLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNA 310

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            ISG++  G   L   + R+FD+M+                                +  
Sbjct: 311 MISGYSMHG---LGREALRIFDKMQ--------------------------------ETE 335

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC----NALIDMYSKCGSL 308
           ++P+K++ V VL  C++   L  G+      I+   +H +  C      ++ +  + G L
Sbjct: 336 VKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQ---DHGIEPCIEHYTCMVWLLGRGGHL 392

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           D A ++ ++  F    + W +++    +H
Sbjct: 393 DKAVKLIDEIPFQPSVMVWRALLGACVIH 421


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 173/496 (34%), Positives = 288/496 (58%), Gaps = 5/496 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L   K+ H  ++  G  SN +V   L+  Y+LCG    ++ VF+    +DV+ +N +I+
Sbjct: 150 ALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMIS 209

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY +   + E++EL   M  + VSP   TL  +     ++KD ++   +H    +     
Sbjct: 210 GYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP 269

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
            + L N+L++ Y  CG+    + +F  M  R+V SW   + G+   G+  L   +R  FD
Sbjct: 270 SLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKL---ARTYFD 326

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           QM  R+  +WT MI+GY++ G  +E+L +F EMQ    I P++ ++VSVL  C+ L  L 
Sbjct: 327 QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLE 385

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+ I  +  + ++ +DV + NALIDMY KCG  + A++VF D    +D  TW+++V G 
Sbjct: 386 IGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKFTWTAMVVGL 444

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G+G EA+ ++ +M  +  +PD IT +GVLSAC  SG++++  + +  + + +RI+P+
Sbjct: 445 ANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPS 504

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
                C+VDMLGRAG +  A + ++ MP+ P+  +WGAL+ AS +H +  M +LA K ++
Sbjct: 505 LVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKIL 564

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEP+N + Y  L N+YA  +RW  + E+R  + D  +KK+PG S I ++G  H F   D
Sbjct: 565 ELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGD 624

Query: 515 KAHPCSVSIYEMLDDL 530
           K+H  S  IY  L++L
Sbjct: 625 KSHLQSEEIYMKLEEL 640



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 199/469 (42%), Gaps = 84/469 (17%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYA--LCGQPTQSQLVFNSIQ 82
            F+ +    ++    KQ HSQ ++ G   NP    KL   +   L G  + +  +F  I 
Sbjct: 36  RFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIP 95

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD---LNV 139
             DV ++N++I G+ K     E + L+ NM    V+PD  T   +  L+G  +D   L  
Sbjct: 96  EPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFL--LNGLKRDGGALAC 153

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +H   +K G   ++ + N+L+ MY  CG       +FD   + +V SWN+       
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNL------- 206

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                      MI+GY +  + +E++ L +EM+ ++ + P  V+
Sbjct: 207 ---------------------------MISGYNRMKEYEESIELLVEME-RNLVSPTSVT 238

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           L+ VL  CS +      K++H +    +    + L NAL++ Y+ CG +D A R+F  S 
Sbjct: 239 LLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR-SM 297

Query: 320 FNKDAITWSSIVSGYGLHGK-------------------------------GHEAVLLYN 348
             +D I+W+SIV GY   G                                 +E++ ++ 
Sbjct: 298 KARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFR 357

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
           +M   G  PD  T+V VL+AC   G +  G E   + I+  +IK    +   ++DM  + 
Sbjct: 358 EMQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKC 416

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS--------EMQDLA 449
           G  ++A      M  +     W A+V     +G          +MQD++
Sbjct: 417 GCSEKAQKVFHDMD-QRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMS 464


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 168/502 (33%), Positives = 286/502 (56%), Gaps = 1/502 (0%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           ++ H++I++ G  ++  V+T LI  Y  CG   +++ VF+ ++ +D+  +N +I  YV N
Sbjct: 227 RKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLN 286

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
              +EALEL+  +          T  +I      +K L  G L+H   ++ G   +V +A
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
            +L++MY KCG   E   +F+ M  R+  +W+  I  +AS+G      ++R+VFD++  R
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR 406

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           +  +W AMI  YVQNG    A+ +F EM     ++P+ V+ ++VL  C+SL  LS  K +
Sbjct: 407 DTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKAL 466

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H      EL  +V + N LI+MY++CGSL+ A R+F  ++  K  ++W+++V+ +  +G+
Sbjct: 467 HAQISESELESNVVVTNTLINMYARCGSLEEAERLFA-AAKEKTVVSWTAMVAAFSQYGR 525

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+ L+ +M   G KPD +T   +L  C   G + +G   +  +   + + PT +  A
Sbjct: 526 YAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFA 585

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            +VD+LGR+G+L  A + +++MP EP P  W   ++A  +HG  E+ + A + + +L+P 
Sbjct: 586 AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPS 645

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           + + Y+++SN+YA+   W+ VA +R  M++RGLKK PG S+I + GK H FS   K HP 
Sbjct: 646 STAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPR 705

Query: 520 SVSIYEMLDDLILIMRGAAASP 541
           +  I E L  L  +MR A   P
Sbjct: 706 TDEICEELTRLHGLMRAAGYVP 727



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 224/482 (46%), Gaps = 77/482 (15%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           F+ V     SL   ++ H+++   G  S   ++  L+T YA  G    ++ +F S+Q +D
Sbjct: 113 FVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRD 172

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
              +N++I  + ++   + AL +F  M   +V P+  T   +       + L  G  IH 
Sbjct: 173 ETSWNAVILAHSQSGDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHA 231

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             +  GF  D+++A +L++MY KCG   E   +FD+M +R++ SWNV             
Sbjct: 232 EIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNV------------- 278

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                                MI  YV NGD  EAL L+ ++ ++   +  K + VS+L 
Sbjct: 279 ---------------------MIGCYVLNGDFHEALELYQKLDMEG-FKRTKATFVSILG 316

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            CSS+  L+ G+ +H   + + L+ +V++  AL++MY+KCGSL+ AR+VF ++  N+DA+
Sbjct: 317 ACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVF-NAMKNRDAV 375

Query: 326 TWSSIVSGYGLHGKGHEA--------------VLLYNKMV-------------------- 351
            WS+++  Y  +G G +A               + +N M+                    
Sbjct: 376 AWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMT 435

Query: 352 -CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G KPD +T + VL AC   G ++E ++  ++ I+   ++    +   +++M  R G 
Sbjct: 436 GAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQDLAYKSLIQLEPENPSNYVSLSN 469
           L+ A         E +   W A+V+A   +G  +E  DL  +  + LE   P +    S 
Sbjct: 495 LEEAERLFAAAK-EKTVVSWTAMVAAFSQYGRYAEALDLFQE--MDLEGVKPDDVTYTSI 551

Query: 470 LY 471
           L+
Sbjct: 552 LF 553



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 145/359 (40%), Gaps = 75/359 (20%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T AT    L   ++ ++L   +  HS IL  G  S   V+T L+  YA CG   +++ VF
Sbjct: 307 TKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVF 366

Query: 79  NSIQHKDVYL----------------------------------YNSLINGYVKNHGHNE 104
           N+++++D                                     +N++I  YV+N     
Sbjct: 367 NAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVA 426

Query: 105 ALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163
           A+++F  M   + + PD  T   + +    +  L+    +H    +     +V++ N+L+
Sbjct: 427 AMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLI 486

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
           +MY +CG   E   LF    ++ V S                                  
Sbjct: 487 NMYARCGSLEEAERLFAAAKEKTVVS---------------------------------- 512

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           WTAM+  + Q G   EAL LF EM L+  ++P+ V+  S+L  C+    L  G +   F 
Sbjct: 513 WTAMVAAFSQYGRYAEALDLFQEMDLEG-VKPDDVTYTSILFVCTHGGSLEQGWRY--FT 569

Query: 284 IRKELNHDVSLCN---ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
              EL+      +   A++D+  + G L  A+ + E   F  D + W + ++   +HGK
Sbjct: 570 DMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGK 628



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           DR +P+ V+ ++VL +CSS   +  G+ +H          D  + NALI MY KC SL  
Sbjct: 2   DR-QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 311 ARRVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
           AR VFE   +  ++ ++W+++++ Y  +G   EA++LY +M   G   D +T V VL AC
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
                + +G EI+N V  +  +     +   +V M  R G +  A    +++      S 
Sbjct: 121 SS---LAQGREIHNRVFYS-GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS- 175

Query: 430 WGALVSASVMHGN 442
           W A++ A    G+
Sbjct: 176 WNAVILAHSQSGD 188


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 185/571 (32%), Positives = 285/571 (49%), Gaps = 67/571 (11%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L    Q H+Q+L      + FV+ KLI A++LC     +  VFN + H +V+LYNS+I 
Sbjct: 33  NLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIR 92

Query: 95  GYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            +  N  H       F  M  + + PD+FT   + K       L +  +IH    K GF 
Sbjct: 93  AHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFY 152

Query: 154 VDVILANSLMSMY---------------------------------VKCGKFSECLNLFD 180
            D+ + NSL+  Y                                 V+CG+      LFD
Sbjct: 153 GDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFD 212

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           EMP+R++ SWN  + G+A +G+     R+  +F++M +RN+ +W+ M+ GY + GD+D A
Sbjct: 213 EMPERDMVSWNTMLDGYAKAGEMD---RAFELFERMPQRNIVSWSTMVCGYSKGGDMDMA 269

Query: 241 LVLFLEMQLKDRI------------------------------EPNKVSLVSVLPTCSSL 270
            VLF     K+ +                               P+   L+S+L  C+  
Sbjct: 270 RVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAES 329

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  GK+IH    R        + NA IDMY+KCG LD A  VF      KD ++W+S+
Sbjct: 330 GMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSM 389

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           + G+ +HG G +A+ L+++MV  G +PD  T VG+L AC  +GL+NEG + + S+   Y 
Sbjct: 390 IQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYG 449

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           I P  E   C++D+LGR G L  A   +++MP+EP+  I G L++A  MH + +      
Sbjct: 450 IVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVC 509

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + L ++EP +P NY  LSN+YA +  W  VA +R  M + G +K  G S I +  + H F
Sbjct: 510 EQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEVHEF 569

Query: 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           +V D++HP S  IY+M+D L+  +R     P
Sbjct: 570 TVFDQSHPKSDDIYKMIDRLVQDLRQVGYVP 600


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/519 (35%), Positives = 272/519 (52%), Gaps = 37/519 (7%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            LQ      SL+  +Q H ++L  G   +  +STKL+  YA CGQ   ++ +F+ +  ++
Sbjct: 68  ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRN 127

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           V+L+N LI  Y +      A+ L+  M    V PD+FT   + K    + DL  G  +H 
Sbjct: 128 VFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQ 187

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
                 +  DV +   ++ MY KCG    C++                            
Sbjct: 188 RVSGTRWGQDVFVCAGVVDMYAKCG----CVD---------------------------- 215

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
              +R VFD +  R+   W +MI  Y QNG   EAL L  +M   + I P   +LVS + 
Sbjct: 216 --DARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMA-ANGIGPTIATLVSAVS 272

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
             +    L  G+++HGF  R+       L  +L+DMY+K G +  AR +FE     ++ +
Sbjct: 273 AAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFE-QLMKRELV 331

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNS 384
           +W++++ GYG+HG   EA+ L+NKM       PD IT VGVLSAC   G++ E  E +  
Sbjct: 332 SWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYL 391

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           ++N Y IKPT +   CV+D+LG  G+ + A D IK M +EP   IWGAL++   +H N E
Sbjct: 392 MVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVE 451

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           + +LA + LI+LEPE+  NYV LSN+YA S +W+  A +R +M +RGLKK   CSWI + 
Sbjct: 452 LGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELK 511

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           GKTH F V D +HP S  IY  L+ L  +M  A   P +
Sbjct: 512 GKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDI 550



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 4/188 (2%)

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L +C +   L  G+Q+HG  +   L  D  L   L+D+Y+ CG +  ARR+F D    
Sbjct: 67  SILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLF-DGMPK 125

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           ++   W+ ++  Y   G    AV LY  MV  G +PD  T   VL AC     +  G E+
Sbjct: 126 RNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREV 185

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  V  T R      +CA VVDM  + G +D A      + V  +  +W ++++A   +G
Sbjct: 186 HQRVSGT-RWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDA-VVWNSMIAAYGQNG 243

Query: 442 NSEMQDLA 449
              M+ LA
Sbjct: 244 RP-MEALA 250


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/496 (34%), Positives = 288/496 (58%), Gaps = 5/496 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L   K+ H  ++  G  SN +V   L+  Y+LCG    ++ VF+    +DV+ +N +I+
Sbjct: 150 ALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMIS 209

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY +   + E++EL   M  + VSP   TL  +     ++KD ++   +H    +     
Sbjct: 210 GYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP 269

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
            + L N+L++ Y  CG+    + +F  M  R+V SW   + G+   G+  L   +R  FD
Sbjct: 270 SLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKL---ARTYFD 326

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           QM  R+  +WT MI+GY++ G  +E+L +F EMQ    I P++ ++VSVL  C+ L  L 
Sbjct: 327 QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLE 385

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+ I  +  + ++ +DV + NALIDMY KCG  + A++VF D    +D  TW+++V G 
Sbjct: 386 IGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKFTWTAMVVGL 444

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G+G EA+ ++ +M  +  +PD IT +GVLSAC  SG++++  + +  + + +RI+P+
Sbjct: 445 ANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPS 504

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
                C+VDMLGRAG +  A + ++ MP+ P+  +WGAL+ AS +H +  M +LA K ++
Sbjct: 505 LVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKIL 564

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEP+N + Y  L N+YA  +RW  + E+R  + D  +KK+PG S I ++G  H F   D
Sbjct: 565 ELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGD 624

Query: 515 KAHPCSVSIYEMLDDL 530
           K+H  S  IY  L++L
Sbjct: 625 KSHLQSEEIYMKLEEL 640



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 199/469 (42%), Gaps = 84/469 (17%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYA--LCGQPTQSQLVFNSIQ 82
            F+ +    ++    KQ HSQ ++ G   NP    KL   +   L G  + +  +F  I 
Sbjct: 36  RFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIP 95

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD---LNV 139
             DV ++N++I G+ K     E + L+ NM    V+PD  T   +  L+G  +D   L  
Sbjct: 96  EPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFL--LNGLKRDGGALAC 153

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +H   +K G   ++ + N+L+ MY  CG       +FD   + +V SWN+       
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNL------- 206

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                      MI+GY +  + +E++ L +EM+ ++ + P  V+
Sbjct: 207 ---------------------------MISGYNRMKEYEESIELLVEME-RNLVSPTSVT 238

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           L+ VL  CS +      K++H +    +    + L NAL++ Y+ CG +D A R+F  S 
Sbjct: 239 LLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR-SM 297

Query: 320 FNKDAITWSSIVSGYGLHGK-------------------------------GHEAVLLYN 348
             +D I+W+SIV GY   G                                 +E++ ++ 
Sbjct: 298 KARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFR 357

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
           +M   G  PD  T+V VL+AC   G +  G E   + I+  +IK    +   ++DM  + 
Sbjct: 358 EMQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKC 416

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS--------EMQDLA 449
           G  ++A      M  +     W A+V     +G          +MQD++
Sbjct: 417 GCSEKAQKVFHDMD-QRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMS 464


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 194/543 (35%), Positives = 299/543 (55%), Gaps = 38/543 (6%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+ + L   A    L + ++ HS ++  G  S   V+  L+  YA  G P  +++VF
Sbjct: 144 TQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVF 203

Query: 79  NSIQ-------------------------------HKDVYLYNSLINGYVKNHGHNEALE 107
           + ++                                +DV  +N++I+GY ++    EAL+
Sbjct: 204 DRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALD 263

Query: 108 LFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
           +FS M   S+  PD FTLA+       +++L +G  IH   I+  F     + N+L+SMY
Sbjct: 264 IFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMY 323

Query: 167 VKCGKFSECLNLFDE--MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
            K G       + ++  +   +V ++   + G+   GD +    +RR+FD ++ R+V AW
Sbjct: 324 SKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDIN---PARRIFDSLRVRDVVAW 380

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           TAMI GYVQNG   +A+ LF  M +K+  +PN  +L ++L   SSL  L  G+QIH  A 
Sbjct: 381 TAMIVGYVQNGFNQDAMELFRSM-IKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASAT 439

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R      VS+ NALI MY+K GS++ AR VF    + +D ITW+S++     HG G EA+
Sbjct: 440 RSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEAL 499

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+ +M+  G KPD IT VGVLSAC   GL+ +G   YN + N ++I PT    AC++D+
Sbjct: 500 TLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDL 559

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
            GRAG L  A  FI+ MP+EP    WG+L+++  +H N E+ ++A + L+ +EPEN   Y
Sbjct: 560 FGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAY 619

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
            +L+N+Y++  +W+  A +R  MKD+G+KK  G SW+ I  K H F V D  HP   +IY
Sbjct: 620 SALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIY 679

Query: 525 EML 527
           EM+
Sbjct: 680 EMM 682



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 197/416 (47%), Gaps = 36/416 (8%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +++ YA  G+  ++  VF  +   D   + ++I GY +      A+ +F  M   +V P 
Sbjct: 85  ILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPT 144

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            FTL  +      ++ L +G  +H   +K G    + +ANSL++MY K G       +FD
Sbjct: 145 QFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFD 204

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            M  ++  SWN  IS H  SG   LV  ++  F+QM  R+V +W AMI+GY Q+G   EA
Sbjct: 205 RMKLKSTSSWNTMISSHMQSG---LVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREA 261

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L +F +M +    +P+K +L S L  C++L  L  GKQIH   IR E +   ++ NALI 
Sbjct: 262 LDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALIS 321

Query: 301 MYSKCGSLDCARRVFEDSSFN--------------------------------KDAITWS 328
           MYSK G ++ A+++ E S  +                                +D + W+
Sbjct: 322 MYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWT 381

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++ GY  +G   +A+ L+  M+  G KP+  T+  +LS       ++ G +I+ S   +
Sbjct: 382 AMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRS 441

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
                +  +   ++ M  ++G ++ A      +  +     W +++ A   HG  E
Sbjct: 442 GN-ASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGE 496



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 203/413 (49%), Gaps = 76/413 (18%)

Query: 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
           SP D   + + + S + KD   G  IH   IK G  + V L N+LM+ Y K G   +   
Sbjct: 11  SPSDPYTSFLQR-SLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHR 69

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           +FDEMP ++V SWN+ +SG+A  G       + RVF++M   +  +WTAMI GY Q G  
Sbjct: 70  VFDEMPVKSVFSWNIILSGYAKGGRLE---EAHRVFEEMPEPDSVSWTAMIVGYNQMGQF 126

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
           + A+ +F EM + D + P + +L +VL +C+++  L  G+++H F ++  L+  +S+ N+
Sbjct: 127 ENAIGMFREM-VSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANS 185

Query: 298 LIDMYSKCGSLDCARRVFE------DSSFN------------------------KDAITW 327
           L++MY+K G    A+ VF+       SS+N                        +D ++W
Sbjct: 186 LLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSW 245

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGVLSACGRSGLINEGLEIY---- 382
           ++++SGY  HG   EA+ +++KM+    SKPD  T+   LSAC     +  G +I+    
Sbjct: 246 NAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHII 305

Query: 383 -----------NSVINTYRIKPTTEICACVV--------DMLGRAGQLDRALDFIKTMPV 423
                      N++I+ Y      EI   ++        D++     LD    ++K   +
Sbjct: 306 RTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLD---GYVKLGDI 362

Query: 424 EPSPSI-----------WGALVSASVMHG-NSEMQDLAYKSLIQLEPENPSNY 464
            P+  I           W A++   V +G N +  +L ++S+I+  P+ P+NY
Sbjct: 363 NPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMEL-FRSMIKEGPK-PNNY 413


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/494 (35%), Positives = 285/494 (57%), Gaps = 8/494 (1%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
            +  H+ ++ LG   N  V++ L+ AY   G    ++ +           +N+LI+G+ +
Sbjct: 42  ARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECDTP--VAWNALISGHNR 99

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE-IKDLNVGMLIHGLSIKIGFVVDVI 157
                E+   F +M  +  +P   T  ++    G+  +D+ +GM +HG  +  G + D+ 
Sbjct: 100 GGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLR 159

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + N+L+ MY +C        +FD M  R+V SW   +SG A  G    V  +R +FD+M 
Sbjct: 160 VENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQ---VDEARDLFDRMP 216

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            R+  +WTAMI+GYV      EAL +F EMQ  + +  ++ ++VSV+  C+ L  L  G+
Sbjct: 217 ERDTVSWTAMIDGYVWAARFREALEMFREMQYSN-VSADEFTMVSVITACAQLGALEMGE 275

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            +  +  R+ +  D  + NALIDMYSKCGS++ A  VF+    ++D  TW++I+ G  ++
Sbjct: 276 WVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFK-GMHHRDKFTWTAIILGLAVN 334

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G   EA+ ++++M+ +   PD +T +GVL+AC  +GL+++G E + S+I  Y I P    
Sbjct: 335 GYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVH 394

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             C++D+LGRAG++  ALD I  MP+ P+ +IWG L++A  +HGNSE+ +L  + L++L+
Sbjct: 395 YGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELD 454

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           PEN   Y+ LSN+YA   RW+ V  LR  + ++G+KK PGCS I + G  H F   D++H
Sbjct: 455 PENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSH 514

Query: 518 PCSVSIYEMLDDLI 531
           P S  IY  L+ +I
Sbjct: 515 PMSKEIYSKLESII 528



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/376 (20%), Positives = 149/376 (39%), Gaps = 77/376 (20%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R + L  Q H +++  G + +  V   L+  YA C     +  VF+ +Q + V  + SL+
Sbjct: 137 RDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLL 196

Query: 94  NGYVKNHGHNEALELFS-------------------------------NMYYSNVSPDDF 122
           +G  +    +EA +LF                                 M YSNVS D+F
Sbjct: 197 SGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEF 256

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T+ ++     ++  L +G  +     + G  +D  + N+L+ MY KCG     L++F  M
Sbjct: 257 TMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGM 316

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
             R                                  + + WTA+I G   NG  +EA+ 
Sbjct: 317 HHR----------------------------------DKFTWTAIILGLAVNGYEEEAIE 342

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSLCNA 297
           +F  M ++    P++V+ + VL  C+    +  G++     I  + I   + H       
Sbjct: 343 MFHRM-IRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVH----YGC 397

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           +ID+  + G +  A    +      ++  W ++++   +HG      L+  +++ L  + 
Sbjct: 398 IIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPEN 457

Query: 358 DIITIV--GVLSACGR 371
            ++ I+   + + C R
Sbjct: 458 SMVYILLSNIYAKCNR 473


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/517 (35%), Positives = 284/517 (54%), Gaps = 37/517 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+T+   L      ++L   K  H   +     +   V T L+  YA C     ++ +F+
Sbjct: 210 SSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFD 269

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLN 138
            +  ++   ++++I GYV +    EALELF  M   + + P   TL ++ +   ++ DL+
Sbjct: 270 VMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLS 329

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  +H   IK+G V+D++L N+L+SMY KCG   + +                      
Sbjct: 330 RGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAI---------------------- 367

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                       R FD+M  ++  +++A+++G VQNG+   AL +F  MQL   I+P+  
Sbjct: 368 ------------RFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG-IDPDLT 414

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +++ VLP CS L  L  G   HG+ I +    D  +CNALIDMYSKCG +  AR VF   
Sbjct: 415 TMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
               D ++W++++ GYG+HG G EA+ L++ ++ LG KPD IT + +LS+C  SGL+ EG
Sbjct: 475 D-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEG 533

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
              ++++   + I P  E C C+VD+LGRAG +D A  FI+ MP EP   IW AL+SA  
Sbjct: 534 RLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACR 593

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           +H N E+ +   K +  L PE+  N+V LSN+Y+++ RWD  A +R   KD GLKK PGC
Sbjct: 594 IHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGC 653

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           SWI I+G  H F   D++H     I   L++L++ M+
Sbjct: 654 SWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMK 690



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 213/451 (47%), Gaps = 40/451 (8%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H L+     +SL   K+ H   L     ++  V  KL   Y  C Q   ++ +F+ I + 
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
            V L+N +I  Y  N   + A++L+ +M +  V P+ +T   + K    +  +  G+ IH
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
             +   G   DV +  +L+  Y KCG                                  
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCG---------------------------------- 158

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           ++V ++R+F  M  R+V AW AMI G    G  D+A+ L ++MQ ++ I PN  ++V VL
Sbjct: 159 ILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQ-EEGICPNSSTIVGVL 217

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
           PT      L  GK +HG+ +R+  ++ V +   L+DMY+KC  L  AR++F D    ++ 
Sbjct: 218 PTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIF-DVMGVRNE 276

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYN 383
           ++WS+++ GY       EA+ L+++M+   +  P  +T+  VL AC +   ++ G +++ 
Sbjct: 277 VSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHC 336

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            +I    +     +   ++ M  + G +D A+ F   M  + S S + A+VS  V +GN+
Sbjct: 337 YIIKLGSVLDIL-LGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVS-FSAIVSGCVQNGNA 394

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            +  L+   ++QL   +P     L  L A S
Sbjct: 395 AVA-LSIFRMMQLSGIDPDLTTMLGVLPACS 424



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 154/361 (42%), Gaps = 48/361 (13%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+   L+  A    L   ++ H  I+ LG + +  +   L++ YA CG    +   F
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFF 370

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  KD   ++++++G V+N     AL +F  M  S + PD  T+  +      +  L 
Sbjct: 371 DEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQ 430

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G   HG  I  GF  D ++ N+L+ MY KCGK S    +F+ M + ++ SWN       
Sbjct: 431 HGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWN------- 483

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                      AMI GY  +G   EAL LF ++ L   ++P+ +
Sbjct: 484 ---------------------------AMIIGYGIHGLGMEALGLFHDL-LALGLKPDDI 515

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL------CNALIDMYSKCGSLDCAR 312
           + + +L +CS       G  + G      ++ D S+      C  ++D+  + G +D A 
Sbjct: 516 TFICLLSSCS-----HSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAH 570

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG--SKPDIITIVGVLSACG 370
               +  F  D   WS+++S   +H        +  K+  LG  S  + + +  + SA G
Sbjct: 571 HFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 630

Query: 371 R 371
           R
Sbjct: 631 R 631



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 102/213 (47%), Gaps = 9/213 (4%)

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           M L+  ++ N + L   L  C     L+  K+IH   ++   N D S+ + L  +Y  C 
Sbjct: 1   MPLRFEVKNNYLHL---LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCN 57

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
            +  ARR+F++   N   I W+ I+  Y  +G    A+ LY+ M+ LG +P+  T   VL
Sbjct: 58  QVVLARRLFDEIP-NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVL 116

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
            AC     I +G+EI++     + ++    +C  +VD   + G L  A     +M     
Sbjct: 117 KACSGLLAIEDGVEIHSHA-KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            + W A+++   ++G   + D A + ++Q++ E
Sbjct: 176 VA-WNAMIAGCSLYG---LCDDAVQLIMQMQEE 204


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 176/482 (36%), Positives = 274/482 (56%), Gaps = 13/482 (2%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++ AY   G+   +  +F+ +  +D   +N L+   V++   ++A +LF  M   NV   
Sbjct: 135 MLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAW 194

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
              +A I++ SG + +     L  G+  +     +V+  N+++S Y +  +  E  +LF 
Sbjct: 195 TTMVAGIAR-SGSVDEARA--LFDGMPER-----NVVSWNAMISGYARNHRIDEAHDLFM 246

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           +MP R++ SWN+ I+G     D     R++ +FD+M RRNV  WT M+NGY+Q+   + A
Sbjct: 247 KMPTRDIASWNIMITGFIQDRDLE---RAQDLFDKMPRRNVITWTTMMNGYLQSMQSETA 303

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L +F  M L + I PN+V+ +  +  CS+L GLS G+Q+H    +     D  + + L++
Sbjct: 304 LQIFNGM-LVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMN 362

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           +Y+KCG +  AR+VF D S  KD I+W+ +++ Y  HG G EA+ LY KM   G KP+ +
Sbjct: 363 LYAKCGEIRLARKVF-DLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDV 421

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T VG+LSAC  SGL++EGL I+  ++    I    E   C++D+  RAG+L  A   I  
Sbjct: 422 TYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHF 481

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           + VEPS ++W AL+     HGN  + DLA ++L++ EP N   Y  L N+YAS+ +W   
Sbjct: 482 LKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEA 541

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540
           A++R+ M DRGLKK PGCSWI +  K H F   DK+H  S  I  +L D+  IMR A   
Sbjct: 542 AKIRSEMNDRGLKKQPGCSWIEVENKVHVFVSRDKSHSESDLINSLLQDIHDIMRMACTV 601

Query: 541 PH 542
           P 
Sbjct: 602 PR 603



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/443 (21%), Positives = 187/443 (42%), Gaps = 99/443 (22%)

Query: 50  GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELF 109
           GH+ +P    + +   A  G+ + ++ +F+    +DV  + +L+  Y +    ++A  LF
Sbjct: 33  GHVQDP---NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALF 89

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
                    PD                                  +V+   +L+S Y + 
Sbjct: 90  DR-------PDARR-------------------------------NVVTWTALLSGYARA 111

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGD----------------------FSLVV 207
           G+  E   LF  MP+RNV SWN  +  + S+G                        + +V
Sbjct: 112 GRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAALV 171

Query: 208 RS------RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           RS      R++FD+M  RNV AWT M+ G  ++G +DEA  LF  M  ++ +  N +   
Sbjct: 172 RSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAM--- 228

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKEL-----NHDVSLCNALIDMYSKCGSLDCARRVFE 316
                      +SG  + H      +L       D++  N +I  + +   L+ A+ +F 
Sbjct: 229 -----------ISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLF- 276

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D    ++ ITW+++++GY    +   A+ ++N M+  G +P+ +T +G + AC     ++
Sbjct: 277 DKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLS 336

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EG +++  +  T   +  T I + ++++  + G++ R    +  +  E     W  +++A
Sbjct: 337 EGQQVHQMICKT-SFQFDTFIESTLMNLYAKCGEI-RLARKVFDLSKEKDVISWNGMIAA 394

Query: 437 SVMHG--------NSEMQDLAYK 451
              HG          +MQ+  YK
Sbjct: 395 YAHHGVGVEAIHLYEKMQEKGYK 417



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 111/270 (41%), Gaps = 30/270 (11%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H  I       + F+ + L+  YA CG+   ++ VF+  + KDV  +N +I  Y  +
Sbjct: 339 QQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHH 398

Query: 100 HGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
               EA+ L+  M      P+D T +  +S  S      + G++  GL I    V D  +
Sbjct: 399 GVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACS------HSGLVDEGLRIFEYMVKDRSI 452

Query: 159 A------NSLMSMYVKCGKFSECLNLFDEM---PQRNVGSWNVRISGHASSGDFSLVVRS 209
           A        L+ +  + G+  +   L   +   P   V  WN  + G  S G+ S+   +
Sbjct: 453 AVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTV--WNALLGGCNSHGNESIGDLA 510

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
            R   + +  N   +T + N Y   G   EA  +  EM   DR    +       P CS 
Sbjct: 511 ARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMN--DRGLKKQ-------PGCS- 560

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
              +    ++H F  R + + +  L N+L+
Sbjct: 561 --WIEVENKVHVFVSRDKSHSESDLINSLL 588



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 97/207 (46%), Gaps = 19/207 (9%)

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
           + DV    AL+  Y++ G L  AR +F+     ++ +TW++++SGY   G+  EA  L+ 
Sbjct: 63  DRDVVSWTALVAAYARQGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFQ 122

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLG 406
           +M     + ++++   +L A   +G + +   +++ +       P  +  +   ++  L 
Sbjct: 123 RM----PERNVVSWNTMLEAYTSAGRVRDAWTLFDGM-------PVRDAGSWNILLAALV 171

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE-NPSNYV 465
           R+G +D+A      MP E +   W  +V+     G+ +      ++L    PE N  ++ 
Sbjct: 172 RSGNMDKARKLFDRMP-ERNVMAWTTMVAGIARSGSVD----EARALFDGMPERNVVSWN 226

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGL 492
           ++ + YA + R D   +L   M  R +
Sbjct: 227 AMISGYARNHRIDEAHDLFMKMPTRDI 253


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/489 (35%), Positives = 272/489 (55%), Gaps = 36/489 (7%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           SN  V+  ++  Y  CG   ++ LVF  +  +D   +N++I  + +N    + L LF  M
Sbjct: 409 SNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWM 468

Query: 113 YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
             S + PD+FT  ++ K     + LN GM IH   IK    +D  +  +L+ MY KCG  
Sbjct: 469 LQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCG-- 526

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                                           ++ ++ ++ D++  + V +W A+I+G+ 
Sbjct: 527 --------------------------------MMEKAEKLHDRLAEQTVVSWNAIISGFS 554

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
                +EA   F +M L+  ++P+  +  ++L TC++L+ +  GKQIH   I+KEL  D 
Sbjct: 555 LQKQSEEAQKTFSKM-LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDA 613

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            + + L+DMYSKCG++   + +FE +  N+D +TW+++V GY  HG G EA+ ++  M  
Sbjct: 614 YISSTLVDMYSKCGNMQDFQLIFEKAP-NRDFVTWNAMVCGYAQHGLGEEALKIFEYMQL 672

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
              KP+  T + VL ACG  GL+ +GL  ++S+++ Y + P  E  +CVVD++GR+GQ+ 
Sbjct: 673 ENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVS 732

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
           +AL+ I+ MP E    IW  L+S   +HGN E+ + A  S++QLEPE+ + YV LSN+YA
Sbjct: 733 KALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYA 792

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           ++  W+ V +LR MM+  GLKK PGCSWI I  + H F V DKAHP S  IYE LD L  
Sbjct: 793 NAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTD 852

Query: 533 IMRGAAASP 541
            M+     P
Sbjct: 853 EMKWVGYMP 861



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 212/456 (46%), Gaps = 43/456 (9%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           + +T     +  A   +L+L  Q H   L     ++  + T  +  Y  C   + +Q +F
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           NS+ + ++  YN++I GY ++    EAL +F  +  S +  D+ +L+   +    IK   
Sbjct: 334 NSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDL 393

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G+ +HGLS+K     ++ +AN+++ MY KCG   E   +F+EM  R+  SWN  I+ H 
Sbjct: 394 EGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHE 453

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                             QNG+ ++ L LF+ M L+  +EP++ 
Sbjct: 454 ----------------------------------QNGNEEKTLSLFVWM-LQSGMEPDEF 478

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +  SVL  C+    L+ G +IH   I+  L  D  +  ALIDMYSKCG ++ A ++  D 
Sbjct: 479 TYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKL-HDR 537

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              +  ++W++I+SG+ L  +  EA   ++KM+ +G  PD  T   +L  C     +  G
Sbjct: 538 LAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG 597

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI--WGALVSA 436
            +I+  +I    ++    I + +VDM  + G +    DF       P+     W A+V  
Sbjct: 598 KQIHAQIIKK-ELQSDAYISSTLVDMYSKCGNMQ---DFQLIFEKAPNRDFVTWNAMVCG 653

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
              HG  E + L     +QLE   P++   L+ L A
Sbjct: 654 YAQHGLGE-EALKIFEYMQLENVKPNHATFLAVLRA 688



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 142/533 (26%), Positives = 242/533 (45%), Gaps = 78/533 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC-----------GQ 70
           T  H  Q  +  ++L   KQ+H++++        FV+  LI  Y  C           G 
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 71  PTQ--------------------SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           P +                    +Q +F+++  +DV  +NSLI+GY+ N  H + +++F 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M       D  T A + K    ++D   G+ IHGL++K+GF  DV+  ++L+ MY KC 
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
           K    +  F  MP++N  SW                                  +A+I G
Sbjct: 224 KLDCSIQFFHSMPEKNWVSW----------------------------------SAIIAG 249

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
            VQN DL   L LF EMQ K  +  ++ +  SV  +C+ L  L  G Q+HG A++ +   
Sbjct: 250 CVQNDDLRGGLELFKEMQ-KAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGT 308

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           DV +  A +DMY KC +L  A+++F +S  N +  ++++I+ GY    KG EA+ ++  +
Sbjct: 309 DVVIGTATLDMYMKCNNLSDAQKLF-NSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLL 367

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRA 408
              G   D +++ G   AC       EGL+++   + +      + IC    ++DM G+ 
Sbjct: 368 QKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSL---CQSNICVANAILDMYGKC 424

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPENPSNYVS 466
           G L  A    + M    + S W A+++A   +GN E     +  ++Q  +EP+  + Y S
Sbjct: 425 GALVEACLVFEEMVSRDAVS-WNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFT-YGS 482

Query: 467 LSNLYASSRRWDAVAELRT-MMKDR-GLKKSPGCSWISIHGKTHCFSVADKAH 517
           +    A  +  +   E+   ++K R GL    G + I ++ K      A+K H
Sbjct: 483 VLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLH 535



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 5/233 (2%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V   N+T AT+   L   A   +++L KQ H+QI+     S+ ++S+ L+  Y+ CG   
Sbjct: 574 VDPDNFTYATI---LDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQ 630

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
             QL+F    ++D   +N+++ GY ++    EAL++F  M   NV P+  T   + +  G
Sbjct: 631 DFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACG 690

Query: 133 EIKDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSW 190
            +  +  G+   H +    G    +   + ++ +  + G+ S+ L L + MP + +   W
Sbjct: 691 HMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIW 750

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
              +S     G+  +  ++     Q++  +  A+  + N Y   G  +E   L
Sbjct: 751 RTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKL 803



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 36/218 (16%)

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           K +   +   CS    L  GKQ H   I  E    V + N LI MY KC  L+ A +VF+
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFD 101

Query: 317 ------------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVL- 345
                                         D+   +D ++W+S++SGY LH   H  V+ 
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGY-LHNGDHRKVID 160

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT-YRIKPTTEICACVVDM 404
           ++ +M  +G+  D  T   VL +C        G++I+   +   +     T   + ++DM
Sbjct: 161 VFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTG--SALLDM 218

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
             +  +LD ++ F  +MP E +   W A+++  V + +
Sbjct: 219 YAKCKKLDCSIQFFHSMP-EKNWVSWSAIIAGCVQNDD 255


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 177/511 (34%), Positives = 290/511 (56%), Gaps = 11/511 (2%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS--QLVFNSIQHKDVYLYNSLINGY 96
            KQ H+ I   G     FV  KL+        P     +LVF  +++ + +L+ +LI GY
Sbjct: 55  VKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGY 114

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG-FVVD 155
                  E++ L+++M    + P  FT   + K      D+N+G  +H  +I IG F  D
Sbjct: 115 ALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSD 174

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + + N+L+ MYVKCG       +FDEM  R+V SW   I  +A  G+      +  +FD 
Sbjct: 175 LYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNME---AASELFDG 231

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           +  +++ AWTAM+ GY QN    EAL +F  MQ    ++ ++V+LV V+  C+ L     
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAG-VKTDEVTLVGVISACAQLGAAKY 290

Query: 276 GKQIHGFAIRKEL--NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
              +   A +       +V + +ALIDMY+KCGS++ A +VFE     ++  ++SS++ G
Sbjct: 291 ANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERME-ERNVYSYSSMIVG 349

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           + +HG    A+ L+++M+    KP+ +T +GVL+AC  +G++ +G +++  +   + + P
Sbjct: 350 FAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAP 409

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
           + +  AC+VD+LGRAG+L+ AL+ +K MP+ P   +WGAL+ A  +HGN +M  +A   L
Sbjct: 410 SEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHL 469

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS-IHGKTHCFSV 512
            +LEP    NY+ LSN+YAS+ RWD V+++R +M+ +GLKK+PGCSW+    G  H F  
Sbjct: 470 FELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFA 529

Query: 513 ADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            D +HP S  I + L+DL+  ++     P+L
Sbjct: 530 GDMSHPKSREIKQALEDLLDRLKYLGYQPNL 560


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/529 (34%), Positives = 294/529 (55%), Gaps = 38/529 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           LQ+ A  +S++  ++ HS I S     +  + +KL+  Y  CG   + + +F+ + ++ V
Sbjct: 108 LQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKV 167

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
           +L+N L+NGY K     E+L LF  M    +      + +  KL  E+ D          
Sbjct: 168 FLWNLLMNGYAKIGNFRESLSLFKRMRELGIR----RVESARKLFDELGDR--------- 214

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS------------WNVRI 194
                   DVI  NS++S YV  G   + L+LF++M    + +             N  +
Sbjct: 215 --------DVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLL 266

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
             ++ SG+ +  ++   VF+ M  R+V +WT+MI GY + G  D ++ LF EM+ K+ + 
Sbjct: 267 DMYSKSGNLNSAIQ---VFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEME-KEDLF 322

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           PN +++  +LP C+SL  L  G++IHG  +R   + D  + NAL+DMY KCG+L  AR +
Sbjct: 323 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLL 382

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F D    KD ++W+ +++GYG+HG G EA+  +N+M   G +PD ++ + +L AC  SGL
Sbjct: 383 F-DMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGL 441

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++EG   +N + N   I+P +E  AC+VD+L RAG L +A  FIK MP+EP  +IWGAL+
Sbjct: 442 LDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALL 501

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
               ++ + ++ +   + + +LEPEN   YV L+N+YA + +W+ V +LR  +  RGL+K
Sbjct: 502 CGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRK 561

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           +PGCSWI I GK H F   D +HP +  I  +L      M+     P +
Sbjct: 562 NPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKM 610



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 124/442 (28%), Positives = 203/442 (45%), Gaps = 67/442 (15%)

Query: 55  PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY 114
           P VS+ L   Y  C     S L   +I  K +  YN  I  + +      A+EL      
Sbjct: 41  PLVSSNL---YHSCATIGTSVLPSETIDCK-ITDYNIEICRFCELGNLRRAMELI----- 91

Query: 115 SNVSPD-DFTLAT---ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            N SP  D  L T   + +L  ++K +  G  IH +       VD +L + L+ MYV CG
Sbjct: 92  -NQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCG 150

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDF----SLVVR-----------SRRVFDQ 215
              E   +FD++    V  WN+ ++G+A  G+F    SL  R           +R++FD+
Sbjct: 151 DLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDE 210

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           +  R+V +W +MI+GYV NG  ++ L LF +M L   I  +  ++VSV            
Sbjct: 211 LGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLG-INTDLATMVSV------------ 257

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
                          +++L N L+DMYSK G+L+ A +VFE     +  ++W+S+++GY 
Sbjct: 258 ---------------ELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAGYA 301

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRIKPT 394
             G    +V L+++M      P+ IT+  +L AC     +  G EI+  ++ N + +   
Sbjct: 302 REGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLD-- 359

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
             +   +VDM  + G L  A      +P E     W  +++   MHG       A+  + 
Sbjct: 360 RHVANALVDMYLKCGALGLARLLFDMIP-EKDLVSWTVMIAGYGMHGYGSEAIAAFNEMR 418

Query: 455 Q--LEPENPSNYVSLSNLYASS 474
              +EP+  S ++S+  LYA S
Sbjct: 419 NSGIEPDEVS-FISI--LYACS 437



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A+  +L+  ++ H  IL  G   +  V+  L+  Y  CG    ++L+F+
Sbjct: 325 SITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFD 384

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            I  KD+  +  +I GY  +   +EA+  F+ M  S + PD+ +  +I
Sbjct: 385 MIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISI 432


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 180/547 (32%), Positives = 291/547 (53%), Gaps = 42/547 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ------------ 82
           +L L +  H+     G   +PFV++ L+ AY   G    ++ +F+ +             
Sbjct: 32  TLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSAL 91

Query: 83  --------------------------HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
                                       +V  +N L++G  ++    +A+   + M+   
Sbjct: 92  VAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEG 151

Query: 117 V-SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
           +  PD   ++      G++  ++VG  +HG ++K G   D  +  +L+ MY KCG+ +E 
Sbjct: 152 LLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEV 211

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF-DQMKRRNVYAWTAMINGYVQN 234
           + +FDE    +V S N  I+G + +      +R  + F D+    NV +WT+++   VQN
Sbjct: 212 VRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQN 271

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G   EA+  F EMQ +   EPN V++  VLP  +++  L  G+  H FA+RK   HDV +
Sbjct: 272 GKDLEAVEFFREMQAQG-TEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYV 330

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            +AL+DMY+KCG +  AR +F D+  +++ ++W++++ GY ++G+   AV +++ M+   
Sbjct: 331 SSALVDMYAKCGRVKDARIIF-DTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCK 389

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
            KPD++T   +L+AC ++GL  EG   +  + N Y + P  E  AC+V +LGRAG+LD A
Sbjct: 390 QKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEA 449

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            D I  MP EP   IWG+L+ +  +HGN ++ ++A + L  LEPEN  NYV LSN+YAS 
Sbjct: 450 YDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASK 509

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
           + WD V  +R MMKD GLKK  GCSWI I  K H     D +HP   +I E ++ L + M
Sbjct: 510 KMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQM 569

Query: 535 RGAAASP 541
           R     P
Sbjct: 570 RKLGFVP 576



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 187/429 (43%), Gaps = 53/429 (12%)

Query: 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
           H+ +L  F  + + +  PD   L T  K       L +   +H ++   G   D  +A+S
Sbjct: 3   HSSSLHHF--LRHVSFPPDPHLLPTAFK---SCPTLPLARALHAVAEVSGLARDPFVASS 57

Query: 162 LMSMYVKCGKFSECLNLFDEM--PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           L+  Y++ G       LFD M  PQR V  W+  ++ HA+ GD      + R+ ++M+R 
Sbjct: 58  LLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAE---GAWRLLEEMRRD 114

Query: 220 -----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                NV  W  +++G  ++G   +A+V    M  +  + P+   +   L     +  +S
Sbjct: 115 GGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVS 174

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS--------------- 319
            G+Q+HG+A++     D  +  ALIDMY KCG      RVF++SS               
Sbjct: 175 VGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLS 234

Query: 320 -----------FNK--------DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
                      F +        + ++W+SIV+    +GK  EAV  + +M   G++P+ +
Sbjct: 235 RNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSV 294

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           TI  VL A      +  G   +   +    +     + + +VDM  + G++  A     T
Sbjct: 295 TIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVY-VSSALVDMYAKCGRVKDARIIFDT 353

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           M V  +   W A++    M+G +      + S+++ + + P + V+ + L A+  +    
Sbjct: 354 M-VSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCK-QKP-DMVTFTCLLAACTQAGLT 410

Query: 481 AELRTMMKD 489
            E R   K+
Sbjct: 411 EEGRHYFKE 419



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 53/108 (49%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   + +H   L  G + + +VS+ L+  YA CG+   ++++F+
Sbjct: 293 SVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFD 352

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           ++  ++V  +N++I GY        A+ +F +M      PD  T   +
Sbjct: 353 TMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCL 400


>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
          Length = 545

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 180/506 (35%), Positives = 280/506 (55%), Gaps = 9/506 (1%)

Query: 24  QHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNSIQ 82
            H L    T R L+   + H+Q L+ G H +   +S K+  +YA  G+P  +  +F+ I 
Sbjct: 24  HHLLTQCKTIRELQ---RIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIP 80

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
           H D+  + SL++ ++K   H +A+ +FS+   S   PD F        SG + D  +G +
Sbjct: 81  HPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSV 140

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +HGL  + G   ++++ N+L+ MY +CGKF     +FD M  ++  +W   + G+     
Sbjct: 141 VHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVG 200

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V  +   F QM  ++  +WTA+I G+VQ+    +AL LF +M L+    PN +++V 
Sbjct: 201 ---VDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGH-RPNHITIVG 256

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL  C+ +  L  G+ IHG+  +     ++ + NAL+DMY+K GS+  A  VFE+    K
Sbjct: 257 VLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQM-K 315

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           DA TW++++S + + G G +AV L+  M+  G  P+ +T V VLSAC  +GLI EG E++
Sbjct: 316 DAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELF 375

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           + +   Y I P  E   C+VD+LGR G L+ A   I  M VEP   IW +L+SA + HGN
Sbjct: 376 DKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGN 435

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
             + ++A K +I+ EP +   YV L N+YA S RW    ++R  M  R + K PGCSWI 
Sbjct: 436 DRLAEIAGKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIE 495

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLD 528
           + G  H F V DK+H     IY  L+
Sbjct: 496 VDGVVHEFLVEDKSHDARREIYVTLE 521


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 173/522 (33%), Positives = 279/522 (53%), Gaps = 67/522 (12%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI---- 93
           L KQ H QIL LG  +N FV + L+  YA       ++  F+ +  K+V +YN++I    
Sbjct: 158 LGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLL 217

Query: 94  ---------------------------NGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
                                       G+ +N   +EALE+F  M +  ++ D +T  +
Sbjct: 218 RCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGS 277

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           I    G +  L  G  IH   I+  +  +V + ++L+ MY KC        +F  M  +N
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKN 337

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           + SW   I G+                                   QNG  +EA+ +F E
Sbjct: 338 IISWTALIVGYG----------------------------------QNGCSEEAVRVFSE 363

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           MQ +D I+P+  +L SV+ +C++L  L  G Q H  A+   L H +++ NAL+ +Y KCG
Sbjct: 364 MQ-RDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCG 422

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
           S++ A R+F++ SF+ D ++W+++VSGY   G+  E + L+ KM+  G KPD +T +GVL
Sbjct: 423 SIEDAHRLFDEMSFH-DQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVL 481

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           SAC R+G + +G   ++S+   + I P  +   C++D+  R+G+L  A +FIK MP+ P 
Sbjct: 482 SACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPD 541

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486
              WG L+SA  + G+ E+   A ++L++++P+NP++YV L +++A+  +W+ VA+LR  
Sbjct: 542 AIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRG 601

Query: 487 MKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
           M+DR +KK PGCSWI    K H FS  D++HPCS  IYE L+
Sbjct: 602 MRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLE 643



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 218/443 (49%), Gaps = 11/443 (2%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    L++  A     +  + +F S+  +D+  YN++I G+     H +A+ ++  + 
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130

Query: 114 Y--SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
              S+V P   T++T+   +  + D  +G   H   +++GF  +  + + L+ MY K   
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSL 190

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             +    FDE+  +NV  +N  I+G        +V  +RR+F+ M  R+   WT M+ G+
Sbjct: 191 VGDAKRAFDEVDSKNVVMYNTMITGLLRC---KMVEEARRLFEVMTDRDSITWTTMVTGF 247

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QNG   EAL +F  M+ +  I  ++ +  S+L  C +L  L  GKQIH + IR   + +
Sbjct: 248 TQNGLESEALEIFRRMRFQG-IAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDN 306

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           V + +AL+DMYSKC S+  A  VF   +  K+ I+W++++ GYG +G   EAV ++++M 
Sbjct: 307 VFVGSALVDMYSKCRSIKLAETVFRRMT-CKNIISWTALIVGYGQNGCSEEAVRVFSEMQ 365

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G  PD  T+  V+S+C     + EG + +   + +  +   T +   +V + G+ G +
Sbjct: 366 RDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYIT-VSNALVTLYGKCGSI 424

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQ-LEPENPSNYVSLSN 469
           + A      M      S W ALVS     G + E  DL  K L + ++P+  +    LS 
Sbjct: 425 EDAHRLFDEMSFHDQVS-WTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSA 483

Query: 470 LYASSRRWDAVAELRTMMKDRGL 492
              +       +   +M KD G+
Sbjct: 484 CSRAGFVEKGRSYFHSMQKDHGI 506



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 150/336 (44%), Gaps = 45/336 (13%)

Query: 7   RNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYA 66
           R  F  +    YT  ++   L       +L+  KQ H+ I+   +  N FV + L+  Y+
Sbjct: 262 RMRFQGIAIDQYTFGSI---LTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYS 318

Query: 67  LCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
            C     ++ VF  +  K++  + +LI GY +N    EA+ +FS M    + PDD+TL +
Sbjct: 319 KCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGS 378

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +      +  L  G   H L++  G +  + ++N+L+++Y KCG   +   LFDEM   +
Sbjct: 379 VISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHD 438

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
             SW                                  TA+++GY Q G   E + LF +
Sbjct: 439 QVSW----------------------------------TALVSGYAQFGRAKETIDLFEK 464

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN----HDVSLCNALIDMY 302
           M L   ++P+ V+ + VL  CS    +  G+  +  +++K+       D   C  +ID+Y
Sbjct: 465 M-LAKGVKPDGVTFIGVLSACSRAGFVEKGRS-YFHSMQKDHGIVPIDDHYTC--MIDLY 520

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           S+ G L  A    +    + DAI W +++S   L G
Sbjct: 521 SRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRG 556



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 162/340 (47%), Gaps = 39/340 (11%)

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           L N L++ Y K G+ +    +FD MP  N+ ++N  +S  A +    L+     +F  M 
Sbjct: 43  LLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHA---RLLSDMEALFASMT 99

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLE-MQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           +R++ ++ A+I G+   G   +A+ ++L  +Q    + P+++++ +++   S+L   + G
Sbjct: 100 QRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALG 159

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSK-------------------------------C 305
           KQ H   +R     +  + + L+DMY+K                               C
Sbjct: 160 KQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRC 219

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
             ++ ARR+FE  + ++D+ITW+++V+G+  +G   EA+ ++ +M   G   D  T   +
Sbjct: 220 KMVEEARRLFEVMT-DRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSI 278

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L+ACG    + +G +I+  +I T R      + + +VDM  +   +  A    + M  + 
Sbjct: 279 LTACGALSALEQGKQIHAYIIRT-RYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKN 337

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
             S W AL+     +G SE + +   S +Q +  +P +Y 
Sbjct: 338 IIS-WTALIVGYGQNGCSE-EAVRVFSEMQRDGIDPDDYT 375



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 84/220 (38%), Gaps = 4/220 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SL+   Q H   L  G +    VS  L+T Y  CG    +  +F+ +   D   + +L++
Sbjct: 388 SLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVS 447

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFV 153
           GY +     E ++LF  M    V PD  T   +         +  G    H +    G V
Sbjct: 448 GYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIV 507

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVRSRRV 212
                   ++ +Y + GK  E      +MP   +   W   +S     GD  +   +   
Sbjct: 508 PIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAEN 567

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
             ++  +N  ++  + + +   G  +E  V  L   ++DR
Sbjct: 568 LLEIDPQNPASYVLLCSMHAAKGQWNE--VAQLRRGMRDR 605


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 172/488 (35%), Positives = 280/488 (57%), Gaps = 37/488 (7%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q ++ I+  G   + FV   L++A+A CG    S+ +F     KDV  + +LING ++N 
Sbjct: 124 QFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNG 183

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILA 159
              EALE F  M  S V  D+ T+ ++   +  ++D+  G  +HG  ++ G V+ DV + 
Sbjct: 184 RAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVG 243

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           ++L+ MY KCG   + +                                  +VF++M  R
Sbjct: 244 SALVDMYSKCGYCDDAV----------------------------------KVFNEMPTR 269

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N+ +W A+I GYVQ     EAL +F EM ++  IEPN+ ++ S L  C+ L  L  G+ +
Sbjct: 270 NLVSWGALIAGYVQCNRYKEALKVFQEMIIEG-IEPNQSTVTSALTACAQLGSLDQGRWL 328

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H +  R +L  +  L  AL+DMYSKCG +D A  VFE     KD   W+++++G  + G 
Sbjct: 329 HEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLP-AKDVYPWTAMINGLAMRGD 387

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
              ++ L+++M+    +P+ +T +GVLSAC   GL++EGLE++  +I  YR++P  +   
Sbjct: 388 ALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYG 447

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VD+LGRAG+L+ A+ FI++MP+EP+P +WGAL S  ++H   E+ +     LI+L+P 
Sbjct: 448 CMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPH 507

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           +   Y+ L+NLY+  ++W+A A +R +MK +G+ KSP CSWI ++G  H F   DK+H  
Sbjct: 508 HSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNGVIHEFIAFDKSHIE 567

Query: 520 SVSIYEML 527
           S+++Y ML
Sbjct: 568 SINVYMML 575



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 141/309 (45%), Gaps = 15/309 (4%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +FD++    ++ W  ++  +  +      LV +  ++    + P++ +   +L   S L 
Sbjct: 60  LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLR-NHGVIPDRHTFPLLLKAFSKLR 118

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
                 Q +   ++  L+ D  + N+L+  ++ CG +DC+RR+F +++  KD ++W++++
Sbjct: 119 N-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETA-KKDVVSWTALI 176

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           +G   +G+  EA+  + +M   G + D +T+V VL A      +  G  ++   + + R+
Sbjct: 177 NGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRV 236

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
                + + +VDM  + G  D A+     MP     S WGAL++  V     +     ++
Sbjct: 237 IWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVS-WGALIAGYVQCNRYKEALKVFQ 295

Query: 452 SLIQLEPENPSNYVSLSNLYASSR-------RWDAVAELRTMMKDRGLKKSPGCSWISIH 504
            +I +E   P+     S L A ++       RW      R+ +   GL    G + + ++
Sbjct: 296 EMI-IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKL---GLNSKLGTALVDMY 351

Query: 505 GKTHCFSVA 513
            K  C   A
Sbjct: 352 SKCGCVDEA 360


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/509 (35%), Positives = 276/509 (54%), Gaps = 36/509 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  + L    +  +L+  KQ H+QI+   H S+  VST L   Y  CG    ++ VF  +
Sbjct: 248 TYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECL 307

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            ++DV  +N++I G V +    EA  +F  M    V+PD  T   I         L  G 
Sbjct: 308 PNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGK 367

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH  ++K G V DV   N+L++MY K G   +                           
Sbjct: 368 EIHARAVKDGLVSDVRFGNALINMYSKAGSMKD--------------------------- 400

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  +R+VFD+M +R+V +WTA++ GY   G + E+   F +M L+  +E NK++ +
Sbjct: 401 -------ARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKM-LQQGVEANKITYM 452

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
            VL  CS+ + L  GK+IH   ++  +  D+++ NAL+ MY KCGS++ A RV E  S  
Sbjct: 453 CVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMS-T 511

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D +TW++++ G   +G+G EA+  +  M     +P+  T V V+SAC    L+ EG   
Sbjct: 512 RDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQ 571

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + S+   Y I PT +  AC+VD+L RAG L  A D I TMP +PS ++WGAL++A   HG
Sbjct: 572 FASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHG 631

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ + A +  ++LEP+N   YVSLS +YA++  W  VA+LR +MK+RG+KK PG SWI
Sbjct: 632 NVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWI 691

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            + G+ H F   D++HP +  IY  L+ L
Sbjct: 692 EVAGEVHSFVAGDQSHPRTEEIYSELEAL 720



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 191/430 (44%), Gaps = 38/430 (8%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            LQ     + L + KQ H  IL  G   N ++   L+  Y  CG   +++ +F+   +K 
Sbjct: 50  LLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKS 109

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           V  +N +I+GY       EA  LF+ M    + PD FT  +I         LN G  +H 
Sbjct: 110 VVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHV 169

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             ++ G   +  + N+L+SMY KCG   +   +FD M  R+  SW               
Sbjct: 170 RVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSW--------------- 214

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                              T +   Y ++G   E+L  +  M L++ + P++++ ++VL 
Sbjct: 215 -------------------TTLTGAYAESGYAQESLKTYHAM-LQEGVRPSRITYMNVLS 254

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C SL  L  GKQIH   +  E + DV +  AL  MY KCG++  AR VFE    N+D I
Sbjct: 255 ACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFE-CLPNRDVI 313

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
            W++++ G    G+  EA  ++++M+     PD +T + +LSAC R G +  G EI+   
Sbjct: 314 AWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARA 373

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           +    +         +++M  +AG +  A      MP     S W ALV      G    
Sbjct: 374 VKDGLVS-DVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVS-WTALVGGYADCGQVVE 431

Query: 446 QDLAYKSLIQ 455
               +K ++Q
Sbjct: 432 SFSTFKKMLQ 441



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 164/341 (48%), Gaps = 39/341 (11%)

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
           KDL VG  +H   ++ G   +V + N+L+ +YV CG  +E                    
Sbjct: 58  KDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNE-------------------- 97

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
                         +RR+FD+   ++V +W  MI+GY   G   EA  LF  MQ ++ +E
Sbjct: 98  --------------ARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQ-QEGLE 142

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+K + VS+L  CSS   L+ G+++H   +   L ++ ++ NALI MY+KCGS+  ARRV
Sbjct: 143 PDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRV 202

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F D+  ++D ++W+++   Y   G   E++  Y+ M+  G +P  IT + VLSACG    
Sbjct: 203 F-DAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAA 261

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           + +G +I+  ++ +        +   +  M  + G +  A +  + +P     + W  ++
Sbjct: 262 LEKGKQIHAQIVESEH-HSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIA-WNTMI 319

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
              V  G  E     +  +++ E   P     L+ L A +R
Sbjct: 320 GGLVDSGQLEEAHGMFHRMLK-ECVAPDRVTYLAILSACAR 359



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 4/212 (1%)

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           V +L +C     L+ GKQ+H   +R  +  +V + N L+ +Y  CGS++ ARR+F+  S 
Sbjct: 48  VKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFS- 106

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           NK  ++W+ ++SGY   G G EA  L+  M   G +PD  T V +LSAC     +N G E
Sbjct: 107 NKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGRE 166

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           ++  V+        T +   ++ M  + G +  A      M      S W  L  A    
Sbjct: 167 VHVRVMEAGLANNAT-VGNALISMYAKCGSVRDARRVFDAMASRDEVS-WTTLTGAYAES 224

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
           G ++     Y +++Q E   PS    ++ L A
Sbjct: 225 GYAQESLKTYHAMLQ-EGVRPSRITYMNVLSA 255


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 173/489 (35%), Positives = 272/489 (55%), Gaps = 36/489 (7%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           SN  V+  ++  Y  CG   ++ LVF  +  +D   +N++I  + +N    + L LF  M
Sbjct: 346 SNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWM 405

Query: 113 YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
             S + PD+FT  ++ K     + LN GM IH   IK    +D  +  +L+ MY KCG  
Sbjct: 406 LQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCG-- 463

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                                           ++ ++ ++ D++  + V +W A+I+G+ 
Sbjct: 464 --------------------------------MMEKAEKLHDRLAEQTVVSWNAIISGFS 491

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
                +EA   F +M L+  ++P+  +  ++L TC++L+ +  GKQIH   I+KEL  D 
Sbjct: 492 LQKQSEEAQKTFSKM-LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDA 550

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            + + L+DMYSKCG++   + +FE +  N+D +TW+++V GY  HG G EA+ ++  M  
Sbjct: 551 YISSTLVDMYSKCGNMQDFQLIFEKAP-NRDFVTWNAMVCGYAQHGLGEEALKIFEYMQL 609

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
              KP+  T + VL ACG  GL+ +GL  ++S+++ Y + P  E  +CVVD++GR+GQ+ 
Sbjct: 610 ENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVS 669

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
           +AL+ I+ MP E    IW  L+S   +HGN E+ + A  S++QLEPE+ + YV LSN+YA
Sbjct: 670 KALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYA 729

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           ++  W+ V +LR MM+  GLKK PGCSWI I  + H F V DKAHP S  IYE LD L  
Sbjct: 730 NAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTD 789

Query: 533 IMRGAAASP 541
            M+     P
Sbjct: 790 EMKWVGYMP 798



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 232/478 (48%), Gaps = 45/478 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  H  Q  +  ++L   KQ+H++++        FV+  LI  Y  C     +  VF+ +
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN---VSPDDF------------TLAT 126
             +D   +N+++ GY        A +LF  M  +    V   DF            T A 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAV 163

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC----GKFSECLNLFDEM 182
           + K    ++D   G+ IHGL++K+GF  DV+  ++L+ MY KC          L LF EM
Sbjct: 164 VLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEM 223

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVR------------------SRRVFDQMKRRNVYAW 224
            +  VG+  +++ GHA   DF   V                   S ++F+ +   N+ ++
Sbjct: 224 QKAGVGA--LQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSY 281

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            A+I GY ++    EAL +F  +Q K  +  ++VSL      C+ + G   G Q+HG ++
Sbjct: 282 NAIIVGYARSDKGIEALGMFRLLQ-KSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSM 340

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           +     ++ + NA++DMY KCG+L  A  VFE+   ++DA++W++I++ +  +G   + +
Sbjct: 341 KSLCQSNICVANAILDMYGKCGALVEACLVFEE-MVSRDAVSWNAIIAAHEQNGNEEKTL 399

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+  M+  G +PD  T   VL AC     +N G+EI+N +I + R+   + +   ++DM
Sbjct: 400 SLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKS-RMGLDSFVGIALIDM 458

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL--EPEN 460
             + G +++A + +     E +   W A++S   +   SE     +  ++++  +P+N
Sbjct: 459 YSKCGMMEKA-EKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 515



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 202/435 (46%), Gaps = 44/435 (10%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQ-SQLVFNSIQHKDVYLYNSLINGYVKN 99
           Q H   L     ++  + T  +  Y  C   +  S  +FNS+ + ++  YN++I GY ++
Sbjct: 232 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARS 291

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               EAL +F  +  S +  D+ +L+   +    IK    G+ +HGLS+K     ++ +A
Sbjct: 292 DKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVA 351

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+++ MY KCG   E   +F+EM  R+  SWN  I+ H                      
Sbjct: 352 NAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHE--------------------- 390

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
                        QNG+ ++ L LF+ M L+  +EP++ +  SVL  C+    L+ G +I
Sbjct: 391 -------------QNGNEEKTLSLFVWM-LQSGMEPDEFTYGSVLKACAGWQALNCGMEI 436

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H   I+  +  D  +  ALIDMYSKCG ++ A ++  D    +  ++W++I+SG+ L  +
Sbjct: 437 HNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKL-HDRLAEQTVVSWNAIISGFSLQKQ 495

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA   ++KM+ +G  PD  T   +L  C     +  G +I+  +I    ++    I +
Sbjct: 496 SEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKK-ELQSDAYISS 554

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSI--WGALVSASVMHGNSEMQDLAYKSLIQLE 457
            +VDM  + G +    DF       P+     W A+V     HG  E + L     +QLE
Sbjct: 555 TLVDMYSKCGNMQ---DFQLIFEKAPNRDFVTWNAMVCGYAQHGLGE-EALKIFEYMQLE 610

Query: 458 PENPSNYVSLSNLYA 472
              P++   L+ L A
Sbjct: 611 NVKPNHATFLAVLRA 625



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 38/314 (12%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A  ++L    + H++I+      + FV   LI  Y+ CG   +++ + + +  + V
Sbjct: 421 LKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTV 480

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N++I+G+       EA + FS M    V PD+FT ATI      +  + +G  IH  
Sbjct: 481 VSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQ 540

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            IK     D  ++++L+ MY KCG   +   +F++ P R+  +WN  + G+A        
Sbjct: 541 IIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYA-------- 592

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                                     Q+G  +EAL +F  MQL++ ++PN  + ++VL  
Sbjct: 593 --------------------------QHGLGEEALKIFEYMQLEN-VKPNHATFLAVLRA 625

Query: 267 CSSLIGL--SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
           C  + GL   G    H       L+  +   + ++D+  + G +  A  + E   F  DA
Sbjct: 626 CGHM-GLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADA 684

Query: 325 ITWSSIVSGYGLHG 338
           + W +++S   +HG
Sbjct: 685 VIWRTLLSXCKIHG 698



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 183/469 (39%), Gaps = 114/469 (24%)

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T + I +   + K L  G   H   I   F   V + N L+ MY+KC             
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLG--------- 94

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
                               F+      +VFD M +R+  +W AM+ GY   GD+  A  
Sbjct: 95  --------------------FAF-----KVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQK 129

Query: 243 LFLEM--------QLKD----RIEP--NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288
           LF  M        +L D    R+    ++ +   VL +CSSL    GG QIHG A++   
Sbjct: 130 LFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGF 189

Query: 289 NHDVSLCNALIDMYS--------------------------------------------- 303
           + DV   +AL+DMY+                                             
Sbjct: 190 DCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIG 249

Query: 304 --------KCGSL-DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
                   KC +L DC+ ++F +S  N +  ++++I+ GY    KG EA+ ++  +   G
Sbjct: 250 TATLDMYMKCNNLSDCSNQLF-NSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSG 308

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLD 412
              D +++ G   AC       EGL+++   + +      + IC    ++DM G+ G L 
Sbjct: 309 LGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSL---CQSNICVANAILDMYGKCGALV 365

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPENPSNYVSLSNL 470
            A    + M    + S W A+++A   +GN E     +  ++Q  +EP+  + Y S+   
Sbjct: 366 EACLVFEEMVSRDAVS-WNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFT-YGSVLKA 423

Query: 471 YASSRRWDAVAEL--RTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
            A  +  +   E+  R +    GL    G + I ++ K      A+K H
Sbjct: 424 CAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLH 472



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 5/233 (2%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V   N+T AT+   L   A   +++L KQ H+QI+     S+ ++S+ L+  Y+ CG   
Sbjct: 511 VDPDNFTYATI---LDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQ 567

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
             QL+F    ++D   +N+++ GY ++    EAL++F  M   NV P+  T   + +  G
Sbjct: 568 DFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACG 627

Query: 133 EIKDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSW 190
            +  +  G+   H +    G    +   + ++ +  + G+ S+ L L + MP + +   W
Sbjct: 628 HMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIW 687

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
              +S     G+  +  ++     Q++  +  A+  + N Y   G  +E   L
Sbjct: 688 RTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKL 740



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           K +   +   CS    L  GKQ H   I  E    V + N LI MY KC  L  A +VF 
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVF- 100

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           D    +D ++W++++ GY   G    A  L++ M
Sbjct: 101 DGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAM 134


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 191/574 (33%), Positives = 296/574 (51%), Gaps = 69/574 (12%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  K  HS IL+ GH S+  V T L+  YA CG     + VF  + ++D+  +N++I 
Sbjct: 360 ALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 419

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G  +     EA E++  M    + P+  T   +         L+ G  IH   +K GF+ 
Sbjct: 420 GLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMF 479

Query: 155 DVILANSLMSMYVKCGKF-------------------------------SECLNLFDEMP 183
           D+ + N+L+SMY +CG                                 +E L +F +M 
Sbjct: 480 DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQ 539

Query: 184 QRNVG-------------------SWNVRI------SGHASSGD--------FSL---VV 207
           Q  +                     W  RI      +G A+           +S+   V 
Sbjct: 540 QAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVK 599

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            +R+VFD+M +R++ A+ AMI GY  +    EAL LF  +Q ++ ++P+KV+ +++L  C
Sbjct: 600 DARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ-EEGLKPDKVTYINMLNAC 658

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           ++   L   K+IH   ++     D SL NAL+  Y+KCGS   A  VF D    ++ I+W
Sbjct: 659 ANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVF-DKMMKRNVISW 717

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++I+ G   HG+G + + L+ +M   G KPDI+T V +LSAC  +GL+ EG   + S+  
Sbjct: 718 NAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSR 777

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            + I PT E   C+VD+LGRAGQLD     IKTMP + +  IWGAL+ A  +HGN  + +
Sbjct: 778 DFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAE 837

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A +S ++L+P+N + YV+LS++YA++  WD+ A+LR +M+ RG+ K PG SWI +  K 
Sbjct: 838 RAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKL 897

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           H F   D++HP S  IY  LD L   M+     P
Sbjct: 898 HYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVP 931



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/494 (24%), Positives = 215/494 (43%), Gaps = 77/494 (15%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT    L    +  +L+  ++ H + +    + +  V+  ++  YA CG   +++ VF+ 
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDK 304

Query: 81  IQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           ++ K V  +  +I GY  + GH+E A E+F  M    V P+  T   +         L  
Sbjct: 305 METKSVVSWTIIIGGYA-DCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +H   +  G   D+ +  +L+ MY KCG + +C  +F+++  R++ +WN  I G A 
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 200 SGDFSLVVRSRRVFDQMKRR---------------------------------------N 220
            G++     +  ++ QM+R                                        +
Sbjct: 424 GGNWE---EASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFD 480

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI--------------------------- 253
           +    A+I+ Y + G + +A +LF +M  KD I                           
Sbjct: 481 ISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQ 540

Query: 254 ---EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
              +PN+V+  S+L  CSS   L  G++IH   I   L  D  + N L++MYS CGS+  
Sbjct: 541 AGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKD 600

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR+VF D    +D + +++++ GY  H  G EA+ L++++   G KPD +T + +L+AC 
Sbjct: 601 ARQVF-DRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 659

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
            SG +    EI++ V+    +  T+ +   +V    + G    AL     M      S W
Sbjct: 660 NSGSLEWAKEIHSLVLKDGYLSDTS-LGNALVSTYAKCGSFSDALLVFDKMMKRNVIS-W 717

Query: 431 GALVSASVMHGNSE 444
            A++     HG  +
Sbjct: 718 NAIIGGCAQHGRGQ 731



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 133/558 (23%), Positives = 235/558 (42%), Gaps = 88/558 (15%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNS 91
           + L   ++ H  I+    + + +    LI  Y  CG   +++ V+N + H  + V+ +N+
Sbjct: 155 KDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNA 214

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD---LNVGMLIHGLSI 148
           ++ GYV+     EAL+L   M    ++      AT  +L    K    L  G  IH  ++
Sbjct: 215 MVVGYVQYGYIEEALKLLREMQQHGLA---LGRATTMRLLSSCKSPSALECGREIHVEAM 271

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K   + DV +AN +++MY KCG   E   +FD+M  ++V SW + I G+A  G   +   
Sbjct: 272 KARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAF- 330

Query: 209 SRRVFDQMKRRNV-------------------YAW--------------------TAMIN 229
              +F +M++  V                     W                    TA++ 
Sbjct: 331 --EIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVK 388

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIE------------------------------PNKVS 259
            Y + G   +   +F ++  +D I                               PNK++
Sbjct: 389 MYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKIT 448

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            V +L  C +   L  G++IH   ++     D+S+ NALI MY++CGS+  AR +F +  
Sbjct: 449 YVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLF-NKM 507

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             KD I+W++++ G    G G EA+ ++  M   G KP+ +T   +L+AC     ++ G 
Sbjct: 508 VRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGR 567

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            I+  VI    +     +   +V+M    G +  A      M  +     + A++     
Sbjct: 568 RIHQQVIEA-GLATDAHVANTLVNMYSMCGSVKDARQVFDRM-TQRDIVAYNAMIGGYAA 625

Query: 440 HGNSEMQDLAYKSLIQLEPENPSN--YVSLSNLYASSRRWDAVAELRTM-MKDRGLKK-S 495
           H N   + L     +Q E   P    Y+++ N  A+S   +   E+ ++ +KD  L   S
Sbjct: 626 H-NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTS 684

Query: 496 PGCSWISIHGKTHCFSVA 513
            G + +S + K   FS A
Sbjct: 685 LGNALVSTYAKCGSFSDA 702



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 144/322 (44%), Gaps = 44/322 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L   ++  +L   ++ H Q++  G  ++  V+  L+  Y++CG    ++ VF+ +
Sbjct: 549 TYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRM 608

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D+  YN++I GY  ++   EAL+LF  +    + PD  T   +         L    
Sbjct: 609 TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAK 668

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH L +K G++ D  L N+L+S Y KCG FS+ L +FD+M +RNV SWN          
Sbjct: 669 EIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWN---------- 718

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   A+I G  Q+G   + L LF  M+++  I+P+ V+ V
Sbjct: 719 ------------------------AIIGGCAQHGRGQDVLQLFERMKMEG-IKPDIVTFV 753

Query: 262 SVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           S+L  CS    L  G++        F I   + H       ++D+  + G LD    + +
Sbjct: 754 SLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEH----YGCMVDLLGRAGQLDEVEALIK 809

Query: 317 DSSFNKDAITWSSIVSGYGLHG 338
              F  +   W +++    +HG
Sbjct: 810 TMPFQANTRIWGALLGACRIHG 831



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 155/341 (45%), Gaps = 43/341 (12%)

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
           E+KDL  G  +H   I+   V+D    N+L++MY++CG   E                  
Sbjct: 153 EVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEE------------------ 194

Query: 193 RISGHASSGDFSLVVRSRRVFDQMK--RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
                           +R+V++++    R V++W AM+ GYVQ G ++EAL L  EMQ +
Sbjct: 195 ----------------ARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQ-Q 237

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             +   + + + +L +C S   L  G++IH  A++  L  DV++ N +++MY+KCGS+  
Sbjct: 238 HGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHE 297

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR VF D    K  ++W+ I+ GY   G    A  ++ KM   G  P+ IT + VL+A  
Sbjct: 298 AREVF-DKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFS 356

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
               +  G  +++ ++N    +    +   +V M  + G         + + V      W
Sbjct: 357 GPAALKWGKTVHSHILNAGH-ESDLAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAW 414

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSN--YVSLSN 469
             ++      GN E     Y  + Q E   P+   YV L N
Sbjct: 415 NTMIGGLAEGGNWEEASEIYHQM-QREGMMPNKITYVILLN 454



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 10/222 (4%)

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N    + +L  C  +  L  G+++H   I+     D    NALI+MY +CGS++ AR+V+
Sbjct: 140 NSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVW 199

Query: 316 EDSSFNKDAI-TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
              +  +  + +W+++V GY  +G   EA+ L  +M   G      T + +LS+C     
Sbjct: 200 NKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSA 259

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +  G EI+   +   R+     +  C+++M  + G +  A +    M  +   S W  ++
Sbjct: 260 LECGREIHVEAMKA-RLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVS-WTIII 317

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPE----NPSNYVSLSNLYA 472
                 G+SE   +A++   +++ E    N   Y+++ N ++
Sbjct: 318 GGYADCGHSE---IAFEIFQKMQQEGVVPNRITYINVLNAFS 356


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 178/510 (34%), Positives = 277/510 (54%), Gaps = 43/510 (8%)

Query: 37  KLTKQSHSQILSLGHISNP---FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           +L + +H+QI+    + NP   F+   L+  Y+   +P  +QL+ +   ++ V  + +LI
Sbjct: 23  RLGRAAHAQIIKT--LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALI 80

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            G V+N     AL  FSNM   ++ P+DFT     K SG ++   VG  +H L++K G +
Sbjct: 81  AGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQI 140

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV +  S   MY K G                                  L   +R++F
Sbjct: 141 SDVFVGCSAFDMYSKAG----------------------------------LTEEARKMF 166

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D+M  RN+  W A ++  V  G  D+AL  F+E + K+ IEP    + SVL  C+ L  L
Sbjct: 167 DEMPERNIATWNAYLSNSVLEGRYDDALTAFIEAR-KEGIEPTDFMVSSVLSACAGLSVL 225

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GK +H  A++  +  ++ + +AL+DMY KCGS++ A R F++    ++ +TW++++ G
Sbjct: 226 EVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNAMIGG 284

Query: 334 YGLHGKGHEAVLLYNKMVCLGSK--PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           Y   G+   AV L+++M C   +  P+ +T V VLSAC R+G +N G+EI+ S+   Y I
Sbjct: 285 YAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGI 344

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           +P  E  ACVVD+LGRAG +++A  FIK MP+ P+ S+WGAL+ AS M G SE+  +A  
Sbjct: 345 EPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAAD 404

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
           +L +L+P +  N+V LSN++A++ RW+    +R  MKD G+KK  GCSWI+     H F 
Sbjct: 405 NLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQ 464

Query: 512 VADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             D +H  +  I  ML  L   M  A   P
Sbjct: 465 AKDTSHERNSEIQAMLAKLRGEMEAAGYIP 494



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 159/340 (46%), Gaps = 18/340 (5%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
            + S + RS  + KQ H+  +  G IS+ FV       Y+  G   +++ +F+ +  +++
Sbjct: 115 FKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNI 174

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N+ ++  V    +++AL  F       + P DF ++++      +  L VG  +H L
Sbjct: 175 ATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTL 234

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           ++K   V ++ + ++L+ MY KCG   +    FDEMP+RN+ +WN  I G+A  G   + 
Sbjct: 235 AVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMA 294

Query: 207 VRSRRVFDQMK------RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           V    +FD+M         N   +  +++   + G ++  + +F  M+ +  IEP     
Sbjct: 295 V---TLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHY 351

Query: 261 VSVLPTCSSLIGLSGG-KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
             V+     L+G +G  +Q + F  +  +   VS+  AL+      G  +   +V  D+ 
Sbjct: 352 ACVV----DLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELG-KVAADNL 406

Query: 320 FNKDAITWSSIV---SGYGLHGKGHEAVLLYNKMVCLGSK 356
           F  D +   + V   + +   G+  EA L+  +M  +G K
Sbjct: 407 FELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIK 446



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 2/127 (1%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T   V   L   A    L++ K  H+  +    + N FV + L+  Y  CG    ++  F
Sbjct: 208 TDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAF 267

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN--VSPDDFTLATISKLSGEIKD 136
           + +  +++  +N++I GY      + A+ LF  M   +  V+P+  T   +         
Sbjct: 268 DEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGS 327

Query: 137 LNVGMLI 143
           +NVGM I
Sbjct: 328 VNVGMEI 334


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 173/511 (33%), Positives = 290/511 (56%), Gaps = 37/511 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  A  R+++  ++ H Q + +G  S+ +VS  L+  YA+C     ++ VF++ 
Sbjct: 127 TIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTS 186

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D+  + ++I GYVK     E + LF  M   N+  D  TL  +      + DL +G 
Sbjct: 187 PQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGR 246

Query: 142 LIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
            +H   I+   V +DV + N+L+ MY+KCG                              
Sbjct: 247 KLHRYIIRNSNVNLDVFVGNALVDMYLKCG-----------------------------D 277

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
            +F+     R+VF +M  +NV +W +MI+G  Q G   E+L +F +MQ +  ++P+ V+L
Sbjct: 278 ANFA-----RKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQ-RLGVKPDDVTL 331

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           V+VL +C++L  L  GK +H +  R ++  D  + NAL+DMY+KCGS+D A  VF+  + 
Sbjct: 332 VAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMN- 390

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            KD  ++++++ G  +HG+G +A+ L+++M  +G +PD +T VGVL+AC   GL+ EG +
Sbjct: 391 RKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRK 450

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            +  +   Y ++P  E   C+VD+LGRAG ++ A +FI+ MP+EP   + GAL+ A  +H
Sbjct: 451 YFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIH 510

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
           G  E+ +   K + ++EP     YV +SN+Y+S+ RW    +LR  MK+R L+K+PGCS 
Sbjct: 511 GKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSS 570

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           I + G  H F   DK+HP    IY++LD+++
Sbjct: 571 IELDGVIHEFQKGDKSHPKIKEIYKLLDEIM 601



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 215 QMKRRNVYAWTAMINGY-VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           Q++  N+  + A+I G    N D  E LV++ +M L   I P+  ++  VL  C+    +
Sbjct: 83  QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQM-LSKGIVPDNYTIPFVLKACAESRAV 141

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             G+++HG AI+  L  DV + N L+ MY+ C  +  AR+VF D+S  +D ++W++++ G
Sbjct: 142 REGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVF-DTSPQRDLVSWTTMIQG 200

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y   G   E V L+ +M     + D +T+V VLS+C R G +  G +++  +I    +  
Sbjct: 201 YVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNL 260

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
              +   +VDM  + G  + A    + MPV+   S W +++S     G 
Sbjct: 261 DVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVS-WNSMISGLAQKGQ 308



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 19/143 (13%)

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+K+S +S L TC S+ GL   KQIH   I+   + D  L      + ++  +L CA+ +
Sbjct: 20  PHKLSFLSTLQTCKSIKGL---KQIHASIIKTMPSPDAQLT-----ISTRLSAL-CAQSL 70

Query: 315 FEDSSFNKDAIT---------WSSIVSGYGL-HGKGHEAVLLYNKMVCLGSKPDIITIVG 364
             D  +    +          +++I+ G    +    E +++Y +M+  G  PD  TI  
Sbjct: 71  PIDPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPF 130

Query: 365 VLSACGRSGLINEGLEIYNSVIN 387
           VL AC  S  + EG E++   I 
Sbjct: 131 VLKACAESRAVREGEEVHGQAIK 153


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/517 (35%), Positives = 283/517 (54%), Gaps = 37/517 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+T+   L      ++L   K  H   +     +   V T L+  YA C     ++ +F+
Sbjct: 210 SSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFD 269

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLN 138
            +  ++   ++++I GYV +    EALELF  M   + + P   TL ++ +   ++ DL+
Sbjct: 270 VMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLS 329

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  +H   IK+G V+D++L N+L+SMY KCG   + +                      
Sbjct: 330 RGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAI---------------------- 367

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                       R FD M  ++  +++A+++G VQNG+   AL +F  MQL   I+P+  
Sbjct: 368 ------------RFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG-IDPDLT 414

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +++ VLP CS L  L  G   HG+ I +    D  +CNALIDMYSKCG +  AR VF   
Sbjct: 415 TMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM 474

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
               D ++W++++ GYG+HG G EA+ L++ ++ LG KPD IT + +LS+C  SGL+ EG
Sbjct: 475 D-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEG 533

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
              ++++   + I P  E C C+VD+LGRAG +D A  FI+ MP EP   IW AL+SA  
Sbjct: 534 RLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACR 593

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           +H N E+ +   K +  L PE+  N+V LSN+Y+++ RWD  A +R   KD GLKK PGC
Sbjct: 594 IHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGC 653

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           SWI I+G  H F   D++H     I   L++L++ M+
Sbjct: 654 SWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMK 690



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 213/451 (47%), Gaps = 40/451 (8%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H L+     +SL   K+ H   L     ++  V  KL   Y  C Q   ++ +F+ I + 
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
            V L+N +I  Y  N   + A++L+ +M +  V P+ +T   + K    +  +  G+ IH
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
             +   G   DV +  +L+  Y KCG                                  
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCG---------------------------------- 158

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           ++V ++R+F  M  R+V AW AMI G    G  D+A+ L ++MQ ++ I PN  ++V VL
Sbjct: 159 ILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQ-EEGICPNSSTIVGVL 217

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
           PT      L  GK +HG+ +R+  ++ V +   L+DMY+KC  L  AR++F D    ++ 
Sbjct: 218 PTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIF-DVMGVRNE 276

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYN 383
           ++WS+++ GY       EA+ L+++M+   +  P  +T+  VL AC +   ++ G +++ 
Sbjct: 277 VSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHC 336

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            +I    +     +   ++ M  + G +D A+ F   M  + S S + A+VS  V +GN+
Sbjct: 337 YIIKLGXVLDIL-LGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVS-FSAIVSGCVQNGNA 394

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            +  L+   ++QL   +P     L  L A S
Sbjct: 395 AVA-LSIFRMMQLSGIDPDLTTMLGVLPACS 424



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 154/361 (42%), Gaps = 48/361 (13%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+   L+  A    L   ++ H  I+ LG + +  +   L++ YA CG    +   F
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFF 370

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  KD   ++++++G V+N     AL +F  M  S + PD  T+  +      +  L 
Sbjct: 371 DXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQ 430

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G   HG  I  GF  D ++ N+L+ MY KCGK S    +F+ M + ++ SWN       
Sbjct: 431 HGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWN------- 483

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                      AMI GY  +G   EAL LF ++ L   ++P+ +
Sbjct: 484 ---------------------------AMIIGYGIHGLGMEALGLFHDL-LALGLKPDDI 515

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL------CNALIDMYSKCGSLDCAR 312
           + + +L +CS       G  + G      ++ D S+      C  ++D+  + G +D A 
Sbjct: 516 TFICLLSSCS-----HSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAH 570

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG--SKPDIITIVGVLSACG 370
               +  F  D   WS+++S   +H        +  K+  LG  S  + + +  + SA G
Sbjct: 571 HFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAG 630

Query: 371 R 371
           R
Sbjct: 631 R 631



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 102/213 (47%), Gaps = 9/213 (4%)

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           M L+  ++ N + L   L  C     L+  K+IH   ++   N D S+ + L  +Y  C 
Sbjct: 1   MPLRXEVKNNYLHL---LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCN 57

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
            +  ARR+F++   N   I W+ I+  Y  +G    A+ LY+ M+ LG +P+  T   VL
Sbjct: 58  QVVLARRLFDEIP-NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVL 116

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
            AC     I +G+EI++     + ++    +C  +VD   + G L  A     +M     
Sbjct: 117 KACSGLLAIEDGVEIHSHA-KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            + W A+++   ++G   + D A + ++Q++ E
Sbjct: 176 VA-WNAMIAGCSLYG---LCDDAVQLIMQMQEE 204


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 174/505 (34%), Positives = 290/505 (57%), Gaps = 31/505 (6%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           I +    T +++ Y    +  +++ +F  +  K+V  +N++I+GY KN   ++A+E+F  
Sbjct: 35  IKDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFER 94

Query: 112 MYYSNVSPDDFTLATISKLSGEIKD------------------LNVGMLIHGLSIKIGFV 153
           M+  N+   +  +A + +  G +++                  + +G+   G   +   V
Sbjct: 95  MHERNMVSWNAVIAALVQ-CGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKV 153

Query: 154 VD------VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
            D      V+  N++++ Y K  +  E  +LF+ MP+RN+ SWN  I+G   +G+ +   
Sbjct: 154 FDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAW-- 211

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            +R+VF++M  +NV +WT MI GYVQ G+ + AL +F+EM       PN+ + V+VL  C
Sbjct: 212 -ARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGAC 270

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVS-LCNALIDMYSKCGSLDCARRVFEDSSFN-KDAI 325
           S + GL  G+Q+H   I K +  D + + +AL++MYSKCG L  AR++F+D   + +D +
Sbjct: 271 SDMAGLGEGQQVH-LLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLV 329

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
            W+ +++ Y  HG G EA+ L+  M  LG KP+ ++ V +LSAC  +GL++EGL  ++ +
Sbjct: 330 LWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDEL 389

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
                I+   +  AC+VD+ GRAG+L  A DFIK +  + S SIWG L++    HG+ E+
Sbjct: 390 GRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGDLEI 449

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
             LA K L + +PEN   Y+ LSN+YAS R+W   + +R  MK++GLKK PGCSWI +  
Sbjct: 450 GQLAAKELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCSWIEVGN 509

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDL 530
           + H F   DK+H  S  IY ++ D+
Sbjct: 510 RVHVFLARDKSHYQSNLIYSLVHDI 534



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 192/429 (44%), Gaps = 73/429 (17%)

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-KDVYLYNSLINGYVKNHGHNEALELF 109
           H  +    T +I+ Y  CG    ++ +F+ +   KDV  + ++++GYV+     EA  LF
Sbjct: 2   HERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLF 61

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
             M   NV                                       +  N+++  Y K 
Sbjct: 62  EVMPVKNV---------------------------------------VSWNTMIDGYGKN 82

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
            +  + + +F+ M +RN+ SWN  I+     G    V  +RR FD+M +R+V +WT M+ 
Sbjct: 83  REVDKAIEVFERMHERNMVSWNAVIAALVQCGR---VEEARRRFDEMPKRDVISWTTMVM 139

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL- 288
           G  ++G +DEA  +F  M      E N VS  +++   +  + L        F + + + 
Sbjct: 140 GLARSGRVDEARKVFDRMP-----ERNVVSWNAMVTGYAKNMRLD-----EAFDLFERMP 189

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
             ++S  N +I  + + G L  AR+VF +    K+ ++W+++++GY   G+   A+ ++ 
Sbjct: 190 ERNLSSWNTMITGFIQNGELAWARKVFNEMP-EKNVVSWTTMITGYVQEGESESALKVFV 248

Query: 349 KMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
           +M+   G++P+  T V VL AC     + EG +++  +I+    +  T + + +++M  +
Sbjct: 249 EMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVH-LLISKSVYQDRTFVASALLNMYSK 307

Query: 408 AGQLDRALDFIKTMPV-EPSPSIWGALVSASVMHG--------NSEMQDLAYKSLIQLEP 458
            G+L  A      + + +    +W  +++A   HG          +MQ L +K       
Sbjct: 308 CGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKP------ 361

Query: 459 ENPSNYVSL 467
            N  +YV L
Sbjct: 362 -NDVSYVEL 369



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 13/204 (6%)

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
             DV    A+I  Y KCG +  ARR+F+     KD +TW++++SGY    +  EA  L+ 
Sbjct: 3   ERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFE 62

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
            M       ++++   ++   G++  +++ +E++  +     +     I A V     + 
Sbjct: 63  VMPV----KNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALV-----QC 113

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468
           G+++ A      MP     S W  +V      G     D A K   ++   N  ++ ++ 
Sbjct: 114 GRVEEARRRFDEMPKRDVIS-WTTMVMGLARSGRV---DEARKVFDRMPERNVVSWNAMV 169

Query: 469 NLYASSRRWDAVAELRTMMKDRGL 492
             YA + R D   +L   M +R L
Sbjct: 170 TGYAKNMRLDEAFDLFERMPERNL 193



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 117/270 (43%), Gaps = 28/270 (10%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYV 97
           +Q H  I    +    FV++ L+  Y+ CG+ + ++ +F+   I  +D+ L+N +I  Y 
Sbjct: 280 QQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYA 339

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSI--KIGFVV 154
            +    EA+ELF +M      P+D + +  +S  S      + G++  GL+   ++G   
Sbjct: 340 HHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACS------HAGLVDEGLNYFDELGRDN 393

Query: 155 DVILANS----LMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISGHASSGDFSLVVRS 209
            + L       L+ +  + G+  E  +   ++  +   S W   ++G  + GD  +   +
Sbjct: 394 SIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGDLEIGQLA 453

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
            +  ++    N   +  + N Y       EA  + L+M+ K          +   P CS 
Sbjct: 454 AKELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKG---------LKKQPGCS- 503

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
              +  G ++H F  R + ++  +L  +L+
Sbjct: 504 --WIEVGNRVHVFLARDKSHYQSNLIYSLV 531


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 174/497 (35%), Positives = 281/497 (56%), Gaps = 9/497 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK- 98
           KQ H+  L  G     F+  KL+    L   P    L F+ I    VYLYN  I  +   
Sbjct: 5   KQIHAYSLRNGLDHTKFLIEKLLQ---LPDLPYACTL-FDQIPKPSVYLYNKFIQTFSSI 60

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
            H H   L L+  M     SP+ ++   +      + ++  G ++H    K GF  D+  
Sbjct: 61  GHPHRCWL-LYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFA 119

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
             +L+ MY K G       LFDEMP R++ +WN  I+G+A SG     +    +F++M  
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALE---LFNKMPV 176

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           RNV +WTA+I+GY QNG   +AL +F+ ++ +   +PN+VS+ SVLP CS L  L  GK+
Sbjct: 177 RNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKR 236

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           I  +A       +  + NA+++++++CG+++ A++VF++    ++  +W++++ G  +HG
Sbjct: 237 IEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHG 296

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           +  +A+ LY++M+    +PD +T VG+L AC   G++ EG +++ S+ + +++ P  E  
Sbjct: 297 RCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHY 356

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C+VD+LGRAG+L  A + I+ MP+ P   IWG L+ A   HGN E+ ++A +SL +LEP
Sbjct: 357 GCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEP 416

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
            NP NYV LSN+YA +  W  VA LR MMK   + K  G S+I +    H F V D++H 
Sbjct: 417 WNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRSHL 476

Query: 519 CSVSIYEMLDDLILIMR 535
            S  IY +L  +  I++
Sbjct: 477 KSGEIYALLHKIYDIIK 493



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLI 93
           +L + K+  +   + G   N +VS  ++  +A CG   ++Q VF+ I  K ++  +N++I
Sbjct: 230 ALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMI 289

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL----SIK 149
            G   +    +AL+L+  M    + PDD T   +      +   + GM+  G     S++
Sbjct: 290 MGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLL-----LACTHGGMVAEGRQLFESME 344

Query: 150 IGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMP 183
             F V   L +   L+ +  + G+  E  NL   MP
Sbjct: 345 SKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMP 380


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 196/588 (33%), Positives = 302/588 (51%), Gaps = 77/588 (13%)

Query: 13  VTSRNYTSATVQHFLQ--VSATHR--SLKLTKQSHSQILSLGHISNPFVSTKLITAYALC 68
           V  RN T  + +  L+  +S  HR  SL   KQ H+Q+L        FV  KLI A++LC
Sbjct: 3   VPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLC 62

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
            Q T +  VFN IQ  DV LYN+LI  +V+N     A  +F  M  S V  D+FT   + 
Sbjct: 63  RQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLL 122

Query: 129 KL-SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG----------------- 170
           K  SG++  + V  +IH    K+GF +D+ + NSL+  Y KCG                 
Sbjct: 123 KACSGKVW-VRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAER 181

Query: 171 ----------------KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
                           +  E   LFDEMP+R+  SWN  + G+  +G+ +       +F+
Sbjct: 182 DTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFE---LFE 238

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI--------------------- 253
           +M  RNV +W+ M+ GY + GD+D A +LF +M +K+ +                     
Sbjct: 239 KMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINL 298

Query: 254 ---------EPNKVSLVSVLPTC--SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302
                    + +  +++S+L  C  S L+GL  GK++H    R        + NALIDMY
Sbjct: 299 YNQMEEAGLKFDDGTVISILSACAVSGLLGL--GKRVHASIERTRFKCSTPVSNALIDMY 356

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362
           +KCGSL+ A  +F      KD ++W++I+ G  +HG G +A+ L+++M   G  PD +T 
Sbjct: 357 AKCGSLENALSIFH-GMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTF 415

Query: 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
           VGVL AC  +G ++EGL  ++++   Y + P  E   C+VD+LGR G+L  A   + +MP
Sbjct: 416 VGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMP 475

Query: 423 VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482
           +EP+  IWG L+ A  MH  + + +  +  L++ E  +  N   LSN+YA++  WD  A 
Sbjct: 476 LEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFAN 535

Query: 483 LRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           +R  MK   ++K  G S I +  + H F+V D++HP S  IY+ +D L
Sbjct: 536 IRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTIDGL 583


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 306/558 (54%), Gaps = 40/558 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLV 77
           T  T+ + L   A   S  + K+ HS ++ LG H   P V+  L+  YA  G    +++V
Sbjct: 106 TQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVP-VANSLLNMYAKTGDLKMAKVV 164

Query: 78  FNSIQ-------------------------------HKDVYLYNSLINGYVKNHGHNEAL 106
           F+ ++                                +D+  +NS+I G  ++   NEAL
Sbjct: 165 FDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEAL 224

Query: 107 ELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           + FS++   +++ PD F+LA+       ++ L+ G  IHG  ++  F     + N+L+SM
Sbjct: 225 QFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISM 284

Query: 166 YVKCGKFSECLNLFDE--MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
           Y K G       + ++  +   +V ++   ++G+   GD   +  +R++F+ +K  +V A
Sbjct: 285 YAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGD---ITPARQIFNSLKDPDVVA 341

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           WTAMI GYVQNG  ++A+ +F  M + +   PN  +L ++L   SS+  L+ GKQIH  A
Sbjct: 342 WTAMIVGYVQNGLNNDAIEVFKTM-VSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASA 400

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           IR       S+ NAL  MY+K GS++ AR+VF     N+D ++W+S++     HG G EA
Sbjct: 401 IRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEA 460

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + L+ +M+ LG KPD IT VGVLSAC   GL+ +G   ++ + N ++I PT    AC+VD
Sbjct: 461 IELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVD 520

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           + GRAG L  A  F++ MP+EP    WG+L+S+  ++ N ++  +A + L+ +EP N   
Sbjct: 521 LFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGA 580

Query: 464 YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSI 523
           Y +L+N+Y+S  +WD  A++R +MK RG+KK  G SW+ I  KTH F V D  HP    I
Sbjct: 581 YSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEI 640

Query: 524 YEMLDDLILIMRGAAASP 541
           Y+M+D +   ++    +P
Sbjct: 641 YKMMDKIWKEIKKMGFAP 658



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 205/438 (46%), Gaps = 38/438 (8%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           +   F    +++ YA  G+  ++  VF+ I  +D   + ++I GY +     +A+++F +
Sbjct: 38  VKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVD 97

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    V P  FTL  +           +G  +H   +K+G    V +ANSL++MY K G 
Sbjct: 98  MVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGD 157

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                 +FD M  RN  SWN  IS H + G   L +     F+ +  R++ +W +MI G 
Sbjct: 158 LKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQ---FELLSERDIVSWNSMIAGC 214

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            Q+G  +EAL  F  +     ++P++ SL S L  C++L  LS GKQIHG+ +R   +  
Sbjct: 215 NQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDAS 274

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSS----------------------------FNK- 322
            ++ NALI MY+K G ++ ARR+ E S                             FN  
Sbjct: 275 GAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSL 334

Query: 323 ---DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
              D + W++++ GY  +G  ++A+ ++  MV  G +P+  T+  +LSA      +N G 
Sbjct: 335 KDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGK 394

Query: 380 EIYNSVINTYR-IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           +I+ S I +   + P+  +   +  M  +AG ++ A      +        W +++ A  
Sbjct: 395 QIHASAIRSGEALSPS--VGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALA 452

Query: 439 MHGNSEMQDLAYKSLIQL 456
            HG  E     ++ ++ L
Sbjct: 453 QHGLGEEAIELFEQMLTL 470



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 169/304 (55%), Gaps = 18/304 (5%)

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           +K+G    V L N+LM++Y K G   +  +LF+EMP +   SWN  +SG+A  G      
Sbjct: 2   VKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLE--- 58

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
           ++ +VFD +  R+  +WT +I GY Q G  ++A+ +F++M +KD++ P + +L +VL +C
Sbjct: 59  KAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDM-VKDKVLPTQFTLTNVLASC 117

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           ++      GK++H F ++  L+  V + N+L++MY+K G L  A+ VF+     ++  +W
Sbjct: 118 AATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKL-RNTSSW 176

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++++S +   G+   A+  +     L S+ DI++   +++ C + G  NE L+ ++S++ 
Sbjct: 177 NAMISLHMNCGRVDLALAQFE----LLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILK 232

Query: 388 TYRIKP-----TTEICACV-VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
              +KP      + + AC  ++ L    Q+   +  ++TM  + S ++  AL+S     G
Sbjct: 233 DTSLKPDRFSLASALSACANLEKLSFGKQIHGYI--VRTM-FDASGAVGNALISMYAKSG 289

Query: 442 NSEM 445
             E+
Sbjct: 290 GVEI 293


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 175/487 (35%), Positives = 273/487 (56%), Gaps = 13/487 (2%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
            ++ K  H ++L +G  S+ ++   LI  Y       +++ VF  +  +DV  +NSLI+G
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190

Query: 96  YVKNHGHNEALE-------LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           Y  N   NEALE       LF  M  +   PD  T+ +I +  G + DL  G  +H   I
Sbjct: 191 YNANGYWNEALEIYYQSIKLFMEMV-NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMI 249

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
             G+  D   +N L++MY KCG       +F  M  ++  SWN  I+ +  +G       
Sbjct: 250 TSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMG---D 306

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           S +VF+ MK R++  W  +I   V + D +  L +   M+  + + P+  +++S+LP CS
Sbjct: 307 SLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR-TEGVTPDMATMLSILPVCS 365

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            L     GK+IHG   +  L  DV + N LI+MYSKCGSL  + +VF+     KD +TW+
Sbjct: 366 LLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK-TKDVVTWT 424

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++S  G++G+G +AV  + +M   G  PD +  V ++ AC  SGL+ EGL  ++ +   
Sbjct: 425 ALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKD 484

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           Y+I+P  E  ACVVD+L R+  LD+A DFI +MP++P  SIWGAL+SA  M G++E+ + 
Sbjct: 485 YKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAER 544

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
             + +I+L P++   YV +SN+YA+  +WD V  +R  +K RGLKK PGCSW+ I  K +
Sbjct: 545 VSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVY 604

Query: 509 CFSVADK 515
            F    K
Sbjct: 605 VFGTGTK 611



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 207/462 (44%), Gaps = 67/462 (14%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           SR    +++   L  +AT   L    + HS I++LG   +   S KLI  YA    PT S
Sbjct: 11  SRQTLFSSISRALASAATTTQLH---KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSS 67

Query: 75  QLVFN-SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
             VF  +    +VYL+NS+I     N   +EAL L+S      + PD +T  ++      
Sbjct: 68  FSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAG 127

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           + D  +   IH   + +GF  D+ + N+L+ MY +     +   +F+EMP R+V SWN  
Sbjct: 128 LLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSL 187

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           ISG+ ++G                      W   +  Y Q      ++ LF+EM   ++ 
Sbjct: 188 ISGYNANG---------------------YWNEALEIYYQ------SIKLFMEMV--NQF 218

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           +P+ +++ S+L  C  L  L  GK +H + I      D +  N LI+MY+KCG+L  ++ 
Sbjct: 219 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 278

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM-------------VCL------- 353
           VF      KD+++W+S+++ Y  +GK  +++ ++  M              C+       
Sbjct: 279 VFSGMKC-KDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNL 337

Query: 354 -----------GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
                      G  PD+ T++ +L  C       +G EI+  +     ++    +   ++
Sbjct: 338 GLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL-GLESDVPVGNVLI 396

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +M  + G L  +    K M  +   + W AL+SA  M+G  +
Sbjct: 397 EMYSKCGSLRNSFQVFKLMKTKDVVT-WTALISACGMYGEGK 437



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 46/107 (42%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT+   L V +   + +  K+ H  I  LG  S+  V   LI  Y+ CG    S  VF  
Sbjct: 355 ATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKL 414

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           ++ KDV  + +LI+         +A+  F  M  + + PD      I
Sbjct: 415 MKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAI 461


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 175/496 (35%), Positives = 285/496 (57%), Gaps = 7/496 (1%)

Query: 45  QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
            +  LG  ++ FV    +  +++ G    ++ +F+    +DV  +N+LI GYV++    E
Sbjct: 146 HVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPRE 205

Query: 105 ALELFSNMYYSN--VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           ALELF  +      V PD+ T+        ++ DL +G  +H      G    V L N++
Sbjct: 206 ALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAV 265

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           M MYVKCG      ++F+ +  R   SW   I GHA  G   ++  +R +FD+M  R+V+
Sbjct: 266 MDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLG---MMEDARMLFDEMPERDVF 322

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W A++ GYVQN    EA+ LF EMQ K +++PN++++V++L  CS L  L  G  +H +
Sbjct: 323 PWNALMAGYVQNKQGKEAIALFHEMQ-KSKVDPNEITMVNLLSACSQLGALEMGMWVHHY 381

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
             R +L+  V+L  +L+DMY+KCG++  A  VF +    ++A+TW+S++ G   HG   E
Sbjct: 382 IDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPV-QNALTWTSMICGLANHGHADE 440

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+  + +M+ LG +PD IT +GVLSAC  +GL+  G + ++ +   Y ++   +  +C++
Sbjct: 441 AIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMI 500

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGRAG LD A   +  MP++P   +WGAL  A  MHGN  + + A   L++L+P +  
Sbjct: 501 DLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSG 560

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            YV L+N+YA +       ++R MM+  G++K PGCS I ++G  H F V DK+H  + +
Sbjct: 561 IYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTNA 620

Query: 523 IYEMLDDLILIMRGAA 538
           IY+ L ++ L MR  A
Sbjct: 621 IYDCLHEITLQMRHIA 636



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/480 (23%), Positives = 212/480 (44%), Gaps = 87/480 (18%)

Query: 26  FLQVSATHR-SLKLTKQSHSQILSLG----HISNPFVSTKLITAYALCGQPTQSQLVFNS 80
            L   A H  S ++  + H+  L  G    H ++PF+  +L+ A+A    P   + + ++
Sbjct: 10  LLHAGAVHPPSFRVLLKLHAHHLVSGLLSSHSTSPFID-RLVAAFAH-SDPASPRPLLHA 67

Query: 81  IQ--------HKDVYLYNSLINGY-VKNHGH---NEALELFSNMYYS-NVSPDDFTLATI 127
           +             + YN+      +  H H      L L+  + +S +  PD  T   +
Sbjct: 68  LAILASLPSPPDSAFPYNAAFRALSLCPHQHLVDRHCLPLYRALLHSGSARPDHLTFPFL 127

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
            K    ++  + G  + G   K+GF  DV + N+ M  +   G  +    LFDE P R+V
Sbjct: 128 IKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDV 187

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
            SWN                                   +I GYV++G   EAL LF  +
Sbjct: 188 VSWNT----------------------------------LIGGYVRSGLPREALELFWRL 213

Query: 248 -QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
            +  + + P++V+++  +  C+ +  L  GK++H F   K +   V L NA++DMY KCG
Sbjct: 214 AEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCG 273

Query: 307 SLDCARRVFE------------------------------DSSFNKDAITWSSIVSGYGL 336
           SL+ A  VFE                              D    +D   W+++++GY  
Sbjct: 274 SLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQ 333

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           + +G EA+ L+++M      P+ IT+V +LSAC + G +  G+ +++  I+ +++  +  
Sbjct: 334 NKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHH-YIDRHKLHLSVA 392

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           +   +VDM  + G + +A+     +PV+ + + W +++     HG+++     ++ +I L
Sbjct: 393 LGTSLVDMYAKCGNIKKAICVFNEIPVQNALT-WTSMICGLANHGHADEAIEYFQRMIDL 451


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 181/517 (35%), Positives = 282/517 (54%), Gaps = 37/517 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+T+   L       +L   K  H+  +      N  + T L+  YA C     ++ +FN
Sbjct: 210 SSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFN 269

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLN 138
           ++  K+   ++++I GYV +   ++AL L+ +M     ++P   TLAT+ +   ++ DL 
Sbjct: 270 TVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLK 329

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  +H   IK G  +D  + NSL+SMY KCG     +   DEM  ++  S+        
Sbjct: 330 RGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSY-------- 381

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                     +A+I+G VQNG  ++AL++F +MQ    I P   
Sbjct: 382 --------------------------SAIISGCVQNGYAEKALLIFRQMQ-SSGIAPYLE 414

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +++++LP CS L  L  G   HG+ + +   +D S+CNA+IDMYSKCG +  +R +F D 
Sbjct: 415 TMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIF-DR 473

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
             N+D I+W++++ GYG+HG   EA+ L+ ++  LG KPD +T++ VLSAC  SGL+ EG
Sbjct: 474 MQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEG 533

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
              ++S+   + IKP      C+VD+L RAG LD A  FI+ MP  P+  IWGAL++A  
Sbjct: 534 KYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACR 593

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
            H N EM +   K +  L PE   N+V +SN+Y+S  RWD  A +R++ +  G KKSPGC
Sbjct: 594 THKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGC 653

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           SW+ I G  H F    ++HP S SI + L +L++ M+
Sbjct: 654 SWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMK 690



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 200/422 (47%), Gaps = 44/422 (10%)

Query: 40  KQSHSQILSLGHISNPF-------VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL 92
           +Q H QI S     +P         +T+L   +    +   ++ VF+ I    V L+N +
Sbjct: 19  RQRHRQIRSFSPHPHPHRVSDSDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMM 78

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           I  Y  +    +++ L+ +M    V+P +FT   + K    ++ L +G LIH  +  +G 
Sbjct: 79  IRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGL 138

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
            +D+ ++ +L+ MY KCG   +   LF+ +  ++                          
Sbjct: 139 SMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQD-------------------------- 172

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
                 R++ AW AMI  +  +    + +    +MQ +  + PN  +LVS+LPT      
Sbjct: 173 ------RDIVAWNAMIAAFSFHALHAQTIHSVAQMQ-QAGVTPNSSTLVSILPTIGQANA 225

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  GK IH + IR     +V L  AL+DMY+KC  L  AR++F ++   K+ + WS+++ 
Sbjct: 226 LHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIF-NTVNKKNDVCWSAMIG 284

Query: 333 GYGLHGKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           GY LH    +A+ LY+ M+C+ G  P   T+  +L AC +   +  G +++  +I +  +
Sbjct: 285 GYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKS-GM 343

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
              T +   ++ M  + G +D A+ F+  M  + + S + A++S  V +G +E   L ++
Sbjct: 344 DLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVS-YSAIISGCVQNGYAEKALLIFR 402

Query: 452 SL 453
            +
Sbjct: 403 QM 404



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 156/362 (43%), Gaps = 46/362 (12%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           N T AT+   L+  A    LK  K+ H  ++  G   +  V   LI+ YA CG    +  
Sbjct: 309 NPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVG 368

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
             + +  KD   Y+++I+G V+N    +AL +F  M  S ++P   T+  +      +  
Sbjct: 369 FLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAA 428

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L  G   HG ++  GF  D  + N+++ MY KCGK +    +FD M  R++ SWN     
Sbjct: 429 LQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNT---- 484

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                         MI GY  +G   EAL LF E+Q    ++P+
Sbjct: 485 ------------------------------MIIGYGIHGLCVEALSLFQELQALG-LKPD 513

Query: 257 KVSLVSVLPTCSSLIGLSGGK-----QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            V+L++VL  CS    ++ GK         F I+  + H +     ++D+ ++ G+LD A
Sbjct: 514 DVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYI----CMVDLLARAGNLDEA 569

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK--PDIITIVGVLSAC 369
               +   F  +   W ++++    H        +  K+  LG +   + + +  + S+ 
Sbjct: 570 YTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSV 629

Query: 370 GR 371
           GR
Sbjct: 630 GR 631



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 145/315 (46%), Gaps = 11/315 (3%)

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           H S  +  L   +R VFDQ+ + +V  W  MI  Y  +G   +++ L+L M L+  + P 
Sbjct: 51  HISRNEIQL---ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHM-LQLGVTPT 106

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
             +   +L  CSSL  L  G+ IH  A    L+ D+ +  AL+ MY+KCG L  A+ +F 
Sbjct: 107 NFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFN 166

Query: 317 DSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
             S  ++D + W+++++ +  H    + +    +M   G  P+  T+V +L   G++  +
Sbjct: 167 SISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANAL 226

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           ++G  I+   I  +       +   ++DM  +   L  A     T+  + +   W A++ 
Sbjct: 227 HQGKAIHAYYIRNFFFDNVV-LQTALLDMYAKCHLLFYARKIFNTVN-KKNDVCWSAMIG 284

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV--AELRTMMKDRG-- 491
             V+H +       Y  ++ +   NP+     + L A ++  D     +L   M   G  
Sbjct: 285 GYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMD 344

Query: 492 LKKSPGCSWISIHGK 506
           L  + G S IS++ K
Sbjct: 345 LDTTVGNSLISMYAK 359


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 186/571 (32%), Positives = 284/571 (49%), Gaps = 67/571 (11%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L    Q H+Q+L      + FV+ KLI A++LC     +  VFN + H +V+LYNS+I 
Sbjct: 33  NLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIR 92

Query: 95  GYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            +  N  H       F  M  + + PD+FT   + K       L +  +IH    KIGF 
Sbjct: 93  AHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFY 152

Query: 154 VDVILANSLMSMY---------------------------------VKCGKFSECLNLFD 180
            D+ + NSL+  Y                                 V+CG+      LFD
Sbjct: 153 GDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFD 212

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           EMP R++ SWN  + G+A +G+         +F++M  RN+ +W+ M+ GY + GD+D A
Sbjct: 213 EMPDRDMVSWNTMLDGYAKAGEMDTAFE---LFERMPWRNIVSWSTMVCGYSKGGDMDMA 269

Query: 241 LVLFLEMQLKDRI------------------------------EPNKVSLVSVLPTCSSL 270
            +LF    +K+ +                               P+   L+S+L  C+  
Sbjct: 270 RMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAES 329

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  GK+IH    R        + NA IDMY+KCG LD A  VF      KD ++W+S+
Sbjct: 330 GMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSM 389

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           + G+ +HG G +A+ L++ MV  G +PD  T VG+L AC  +GL+NEG + + S+   Y 
Sbjct: 390 IQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYG 449

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           I P  E   C++D+LGR G L  A   +++MP+EP+  I G L++A  MH + ++     
Sbjct: 450 IVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVC 509

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + L +LEP +P NY  LSN+YA +  W  VA +R  MK+ G +K  G S I +  + H F
Sbjct: 510 EQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEF 569

Query: 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           +V D++HP S  IY+M+D L+  +R     P
Sbjct: 570 TVFDQSHPKSDDIYQMIDRLVQDLRQVGYVP 600


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 183/517 (35%), Positives = 292/517 (56%), Gaps = 24/517 (4%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLI--TAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           +S++  KQ H+ ++  G   +  ++T+++  +A +       +  VF+ +  ++ + +N+
Sbjct: 26  KSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNT 85

Query: 92  LINGYVKNHG-HNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           +I    +    H +AL +F  M   + V P+ FT  ++ K    +  L  G  +HGL +K
Sbjct: 86  VIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLK 145

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLF---------------DEMPQR-NVGSWNVR 193
            G V D  +  +L+ MYV CG   +   LF               DE  +  NV   NV 
Sbjct: 146 FGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVM 205

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           + G+A  G+      +R +FD+M +R+V +W  MI+GY QNG   EA+ +F  M     +
Sbjct: 206 VDGYARVGNLKA---ARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDV 262

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
            PN+V+LVSVLP  S L  L  GK +H +A + ++  D  L +AL+DMY+KCGS++ A +
Sbjct: 263 LPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQ 322

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VFE    N + ITW++++ G  +HGK ++     ++M   G  P  +T + +LSAC  +G
Sbjct: 323 VFERLPQN-NVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAG 381

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
           L++EG   +N ++N+  +KP  E   C+VD+LGRAG L+ A + I  MP++P   IW AL
Sbjct: 382 LVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKAL 441

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           + AS MH N ++   A + L+Q+ P +   YV+LSN+YASS  WD VA +R MMKD  ++
Sbjct: 442 LGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIR 501

Query: 494 KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           K PGCSWI I G  H F V D +H  +  I+ ML+++
Sbjct: 502 KDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEI 538



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/380 (20%), Positives = 146/380 (38%), Gaps = 95/380 (25%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
           A V    +T  +V   L+  A    L   KQ H  +L  G + + FV T L+  Y +CG 
Sbjct: 111 ATVEPNQFTFPSV---LKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGS 167

Query: 71  PTQSQL-----------------------------------------------VFNSIQH 83
              + +                                               +F+ +  
Sbjct: 168 MEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQ 227

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGML 142
           + V  +N +I+GY +N  + EA+E+F  M    +V P+  TL ++      +  L +G  
Sbjct: 228 RSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKW 287

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H  + K    +D +L ++L+ MY KCG   + + +F+ +PQ NV +WN  I G A  G 
Sbjct: 288 VHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHG- 346

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                ++  +F+ + R                               K  I P+ V+ ++
Sbjct: 347 -----KANDIFNYLSRME-----------------------------KCGISPSDVTYIA 372

Query: 263 VLPTCSSLIGLSGGK-----QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           +L  CS    +  G+      ++   ++ ++ H       ++D+  + G L+ A  +  +
Sbjct: 373 ILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEH----YGCMVDLLGRAGYLEEAEELILN 428

Query: 318 SSFNKDAITWSSIVSGYGLH 337
                D + W +++    +H
Sbjct: 429 MPMKPDDVIWKALLGASKMH 448


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 185/527 (35%), Positives = 300/527 (56%), Gaps = 7/527 (1%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQS 74
           +N T    Q FL +  T + +   KQ H   L  G +S   ++   LI  Y   G    +
Sbjct: 58  QNGTYPDRQTFLYLLQTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECA 117

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI 134
           + +F+ +  ++V  YN++I G+ K       LELF +M    + PDDFT+  +  L G++
Sbjct: 118 RQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQL 177

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
            +  +G  +H    K     ++IL N+L+ MYVKC +      +FD   +++  SWN  I
Sbjct: 178 GETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTII 237

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           +G+A  G+  L      +F+Q+  R++ +W ++I+GY QNGD      LF  M   + ++
Sbjct: 238 AGYAKVGELELACD---LFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRM-FAENVK 293

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+KV++V+++   + +  L  G+ IHG A++     +    +ALIDMY KCGS++ A  +
Sbjct: 294 PDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVI 353

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F      KD  TW+++++G+  HG G++A+ L++ M    +KP+ +T V VL+AC  SGL
Sbjct: 354 FNQIP-EKDVTTWTTMITGFAFHGFGNKALELFSVMQA-ETKPNDVTFVSVLAACSHSGL 411

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++EGL+I++S+   Y I+P  E   C+VD+L R+G+L  A+  I+ MP+EPS SIWGA++
Sbjct: 412 VDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVL 471

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
           SA  MH N E+ + A   L++LEPE    Y+ LSN+YA+  RW     +R +M  RG+KK
Sbjct: 472 SACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKK 531

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             GCS +++ G  H F+ ++K HP  + I  +L  L   MR  A  P
Sbjct: 532 IAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMRLEADVP 578


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 176/504 (34%), Positives = 271/504 (53%), Gaps = 43/504 (8%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H  ++  G   NPFV T LI  Y+  G    +  +F  +  ++V  + S+INGY+ +
Sbjct: 156 EQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILS 215

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
                A  LF      +++P+                                  DV+L 
Sbjct: 216 ADLVSARRLF------DLAPER---------------------------------DVVLW 236

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N ++S Y++ G   E   LF EMP R+V  WN  + G+A++G+   +     +F++M  R
Sbjct: 237 NIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEAL---EGLFEEMPER 293

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N+++W A+I GY  NG   E L  F  M  +  + PN  +LV+VL  C+ L  L  GK +
Sbjct: 294 NIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWV 353

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H +A    L  +V + NAL+DMY+KCG ++ A  VF      KD I+W++++ G  +H +
Sbjct: 354 HVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMD-TKDLISWNTLIGGLAMHSR 412

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           G +A+ L+ +M   G KPD IT +G+L AC   GL+ +G   + S+ + Y I P  E   
Sbjct: 413 GADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYG 472

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VDML RAG+L++A+ F++ MPVE    IW  L+ A  ++ N E+ +LA + LI+LEP+
Sbjct: 473 CMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPK 532

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           NP+NYV LSN+Y  + RW+ VA L+  M+D G KK PGCS I ++     F   D+ HP 
Sbjct: 533 NPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQ 592

Query: 520 SVSIYEMLDDLILIMRGAAASPHL 543
              IY +L  L+ ++R     P L
Sbjct: 593 IEEIYGVLRGLVKVLRSFGYVPDL 616



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 128/272 (47%), Gaps = 13/272 (4%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           +R++FDQ+   N+  W +M  GY Q+    E + LF +M+  D I PN  +   VL +C 
Sbjct: 89  ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMD-IRPNCFTFPVVLKSCG 147

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            +  L  G+Q+H F I+     +  +   LIDMYS  G++  A ++F +  F ++ + W+
Sbjct: 148 KINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCE-MFERNVVAWT 206

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           S+++GY L      A  L++    L  + D++    ++S     G + E  ++++ + N 
Sbjct: 207 SMINGYILSADLVSARRLFD----LAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNR 262

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
             +   T     V+      G ++      + MP E +   W AL+     +G       
Sbjct: 263 DVMFWNT-----VLKGYATNGNVEALEGLFEEMP-ERNIFSWNALIGGYAHNGLFFEVLG 316

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           ++K ++  E + P N  +L  + ++  R  A+
Sbjct: 317 SFKRMLS-ESDVPPNDATLVTVLSACARLGAL 347



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 46/108 (42%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            AT+   L   A   +L L K  H    S G   N +V   L+  YA CG    +  VF 
Sbjct: 331 DATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFR 390

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            +  KD+  +N+LI G   +    +AL LF  M  +   PD  T   I
Sbjct: 391 GMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 438


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  324 bits (830), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 285/515 (55%), Gaps = 45/515 (8%)

Query: 25  HFLQ-------VSA--THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ 75
           HFLQ       +SA    R+L   +Q H+Q    G + N  V+ KLI  Y+       + 
Sbjct: 55  HFLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAY 114

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
            +F+ +  +D   ++ ++ G+ K   +      F  +      PD++TL  + +   ++K
Sbjct: 115 GLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLK 174

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           +L +G LIH +  K G  +D  +  +L+ MYVKC +  +                     
Sbjct: 175 NLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIED--------------------- 213

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                        +R +FD+M+ R++  WT MI GY + G  +E+LVLF +M+ ++ + P
Sbjct: 214 -------------ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMR-EEGVVP 259

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           +KV++V+V+  C+ L  +   + I  +  RK+   DV L  A+IDMY+KCG ++ AR +F
Sbjct: 260 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 319

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D    K+ I+WS++++ YG HG+G +A+ L+  M+  G  PD IT+  +L AC  +GL+
Sbjct: 320 -DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLV 378

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            EGL  ++S+   Y ++   +   CVVD+LGRAG+LD AL  IK+M +E    +WGA + 
Sbjct: 379 EEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLG 438

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
           A   H +  + + A  SL++L+ +NP +YV LSN+YA++ RW+ VA++R +M  R LKK+
Sbjct: 439 ACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKT 498

Query: 496 PGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           PG +WI +  K+H FSV D  HP S  IYEML  L
Sbjct: 499 PGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSL 533



 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/496 (33%), Positives = 273/496 (55%), Gaps = 36/496 (7%)

Query: 35   SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
            +L   +Q H Q    G + N  V+ KL+  Y+       +  +F+ +  +D   ++ ++ 
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 809

Query: 95   GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            G+ K   +      F  +      PD++TL  + +   ++K+L +G LIH +  K G  +
Sbjct: 810  GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869

Query: 155  DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
            D  +  +L+ MY KC +  +                                  +R +FD
Sbjct: 870  DHFVCAALVDMYGKCREIED----------------------------------ARFLFD 895

Query: 215  QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            +M  R++  WT MI GY + G+ +E+LVLF +M+ ++ + P+KV++V+V+  C+ L  + 
Sbjct: 896  KMXERDLVTWTVMIGGYAECGNANESLVLFDKMR-EEGVVPDKVAMVTVVFACAKLGAMH 954

Query: 275  GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
              + I  +  RK+   DV L  A+IDM++KCG ++ AR +F D    K+ I+WS++++ Y
Sbjct: 955  KARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIF-DRMEEKNVISWSAMIAAY 1013

Query: 335  GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            G HG+G +A+ L+  M+  G  P+ IT+V +L AC  +GL+ EGL  ++ +   Y ++  
Sbjct: 1014 GYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXD 1073

Query: 395  TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
             +   CVVD+LGRAG+LD AL  I +M  E    +WGA + A   H +  + + A  SL+
Sbjct: 1074 VKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLL 1133

Query: 455  QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
            +L+P+NP +Y+ LSN+YA++ RW+ VA++R +M  R LKK PG +WI +  K+H FSV D
Sbjct: 1134 ELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGD 1193

Query: 515  KAHPCSVSIYEMLDDL 530
              HP S  IYEML  L
Sbjct: 1194 TTHPRSKEIYEMLKSL 1209



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 131/309 (42%), Gaps = 44/309 (14%)

Query: 34   RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
            ++L++ +  H  +   G   + FV   L+  Y  C +   ++ +F+ +  +D+  +  +I
Sbjct: 850  KNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMI 909

Query: 94   NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
             GY +    NE+L LF  M    V PD   + T+     ++  ++    I     +  F 
Sbjct: 910  GGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQ 969

Query: 154  VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +DVIL  +++ M+ KCG       +FD M ++NV SW                       
Sbjct: 970  LDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISW----------------------- 1006

Query: 214  DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                       +AMI  Y  +G   +AL LF  M L+  I PNK++LVS+L  CS    +
Sbjct: 1007 -----------SAMIAAYGYHGQGRKALDLF-PMMLRSGILPNKITLVSLLYACSHAGLV 1054

Query: 274  SGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
              G +        +++R ++ H       ++D+  + G LD A ++    +  KD   W 
Sbjct: 1055 EEGLRFFSXMWEDYSVRXDVKH----YTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWG 1110

Query: 329  SIVSGYGLH 337
            + +     H
Sbjct: 1111 AFLGACRTH 1119


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  324 bits (830), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 182/572 (31%), Positives = 306/572 (53%), Gaps = 69/572 (12%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           KL    H+ +  LG  S+ FV T LI  Y++CG    ++ VF++I++KD+  +  ++  Y
Sbjct: 162 KLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           V+N    E+L+LFS M      P++FT A++ K    ++  NVG  +HG + K  ++ ++
Sbjct: 222 VENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEEL 281

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD----FSLVVRSRR- 211
            +   L+ +Y+K G   + L +F+EMP+ +V  W+  I+ +A S        +  R RR 
Sbjct: 282 FVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRG 341

Query: 212 -------------------VFDQMKRR------------NVYAWTAMINGYVQNGDLD-- 238
                              V  Q+  +            NV+   A+++ Y + G ++  
Sbjct: 342 LVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENS 401

Query: 239 -----------------------------EALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
                                        +AL+LF +M L+ +++  +V+  SVL  C+ 
Sbjct: 402 LQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDM-LECQVQGTEVTYSSVLRACAG 460

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           +  L  G QIH  +++   + +  + NALIDMY+KCG++  AR VF D     D ++W++
Sbjct: 461 IAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVF-DMLREHDQVSWNA 519

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++SGY +HG   EA+  +  M+    KPD +T VG+LSAC  +GL++ G   + S++  Y
Sbjct: 520 MISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEY 579

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I+P  E   C+V +LGR+G LD+A   +  +P EPS  +W AL+SA V+H + E+  ++
Sbjct: 580 DIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRIS 639

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            + ++++EPE+ + +V LSN+YA++RRW  VA +RT MK +G++K PG SWI   G+ H 
Sbjct: 640 AQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHY 699

Query: 510 FSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           FSV D +HP +  I  ML+ L +  R     P
Sbjct: 700 FSVGDTSHPDTKLINGMLEWLNMKARNEGYVP 731



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 219/485 (45%), Gaps = 71/485 (14%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K  H +I+  G+  + F +  L+  Y        +  +F+ +  ++   + +LI GY + 
Sbjct: 64  KYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQC 123

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
              +EA+ LFS +       + F  +T+ KL    +   +G  +H    K+GF  D  + 
Sbjct: 124 LRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVG 183

Query: 160 NSLMSMYVKCGKFSECL-NLFDEMPQRNVGSWNVRISGHASSGDF--SLVVRSR------ 210
            +L+  Y  CG ++EC   +FD +  +++ SW   ++ +  +  F  SL + SR      
Sbjct: 184 TALIDCYSVCG-YAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGF 242

Query: 211 -----------------RVFDQMKR-----------RNVYAWTAMINGYVQNGDLDEALV 242
                             VF+  K              ++    +I+ Y+++GD+D+AL 
Sbjct: 243 KPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQ 302

Query: 243 LFLEM-------------------QLKDRIE-----------PNKVSLVSVLPTCSSLIG 272
           +F EM                   Q ++ IE           PN+ +L S+L  C+SL+ 
Sbjct: 303 VFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVD 362

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  G QIH   ++  L+ +V + NAL+DMY+KCG ++ + ++F +S  N   ++W++++ 
Sbjct: 363 LQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESP-NCTDVSWNTVIV 421

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           GY   G G +A++L+  M+    +   +T   VL AC     +  G +I++  + T   K
Sbjct: 422 GYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDK 481

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
            T  +   ++DM  + G +  A   +  M  E     W A++S   +HG        ++S
Sbjct: 482 NTV-VGNALIDMYAKCGNIKDA-RLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFES 539

Query: 453 LIQLE 457
           +++ E
Sbjct: 540 MLETE 544



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 137/310 (44%), Gaps = 39/310 (12%)

Query: 115 SNVSPDDFTLATISKLSGEIK--DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
           S+ SP+  T    S L   I+  D   G  +H   IK G  +D+   N L++ YVK    
Sbjct: 36  SHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVK---- 91

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                 +D +P                         + ++FD+M  RN  ++  +I GY 
Sbjct: 92  ------YDSLPD------------------------AAKLFDEMPDRNTVSFVTLIQGYS 121

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           Q     EA+ LF  +Q +   E N     +VL    S      G  +H    +   + D 
Sbjct: 122 QCLRFSEAIGLFSRLQGEGH-ELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDA 180

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            +  ALID YS CG  +CAR+VF+   + KD ++W+ +V+ Y  +    E++ L+++M  
Sbjct: 181 FVGTALIDCYSVCGYAECARQVFDAIEY-KDMVSWTGMVACYVENECFEESLKLFSRMRI 239

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
           +G KP+  T   VL AC    + N G  ++     T  ++    +   ++D+  ++G +D
Sbjct: 240 VGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELF-VGVELIDLYIKSGDVD 298

Query: 413 RALDFIKTMP 422
            AL   + MP
Sbjct: 299 DALQVFEEMP 308


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 185/527 (35%), Positives = 300/527 (56%), Gaps = 7/527 (1%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQS 74
           +N T    Q FL +  T + +   KQ H   L  G +S   ++   LI  Y   G    +
Sbjct: 123 QNGTYPDRQTFLYLLQTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECA 182

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI 134
           + +F+ +  ++V  YN++I G+ K       LELF +M    + PDDFT+  +  L G++
Sbjct: 183 RQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQL 242

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
            +  +G  +H    K     ++IL N+L+ MYVKC +      +FD   +++  SWN  I
Sbjct: 243 GETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTII 302

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           +G+A  G+  L      +F+Q+  R++ +W ++I+GY QNGD      LF  M   + ++
Sbjct: 303 AGYAKVGELELACD---LFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRM-FAENVK 358

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+KV++V+++   + +  L  G+ IHG A++     +    +ALIDMY KCGS++ A  +
Sbjct: 359 PDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVI 418

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F      KD  TW+++++G+  HG G++A+ L++ M    +KP+ +T V VL+AC  SGL
Sbjct: 419 FNQIP-EKDVTTWTTMITGFAFHGFGNKALELFSVMQA-ETKPNDVTFVSVLAACSHSGL 476

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++EGL+I++S+   Y I+P  E   C+VD+L R+G+L  A+  I+ MP+EPS SIWGA++
Sbjct: 477 VDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVL 536

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
           SA  MH N E+ + A   L++LEPE    Y+ LSN+YA+  RW     +R +M  RG+KK
Sbjct: 537 SACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKK 596

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             GCS +++ G  H F+ ++K HP  + I  +L  L   MR  A  P
Sbjct: 597 IAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMRLEADVP 643


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 178/547 (32%), Positives = 292/547 (53%), Gaps = 67/547 (12%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           S N    T    L +++    +KL +Q H  ++  G +S  FV + L+  Y+  G  + +
Sbjct: 138 SFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCA 197

Query: 75  QLVFNSIQHKDVYLYN-------------------------------SLINGYVKNHGHN 103
           + VF+ +  K+V +YN                               S+I G+ +N    
Sbjct: 198 RKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDR 257

Query: 104 EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163
           +A+++F  M   N+  D +T  ++    G +  L  G  +H   I+  +  ++ +A++L+
Sbjct: 258 DAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALV 317

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
            MY KC               +N+ S                   +  VF +M  +NV +
Sbjct: 318 DMYCKC---------------KNIKS-------------------AEAVFKKMTCKNVVS 343

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           WTAM+ GY QNG  +EA+  F +MQ K  IEP+  +L SV+ +C++L  L  G Q H  A
Sbjct: 344 WTAMLVGYGQNGYSEEAVKTFSDMQ-KYGIEPDDFTLGSVISSCANLASLEEGAQFHARA 402

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           +   L   +++ NAL+ +Y KCGS++ + R+F + SF KD +TW+++VSGY   GK +E 
Sbjct: 403 LTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISF-KDEVTWTALVSGYAQFGKANET 461

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + L+  M+  G KPD +T +GVLSAC R+GL+ +G +I+ S+IN + I P  +   C++D
Sbjct: 462 IGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMID 521

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           +  RAG+++ A +FI  MP  P    W  L+S+   +GN ++   A + L++L+P N ++
Sbjct: 522 LFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTAS 581

Query: 464 YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSI 523
           YV LS++YA+  +W+ VA LR  M+D+GL+K PGCSWI    + H FS  DK++P S  I
Sbjct: 582 YVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQI 641

Query: 524 YEMLDDL 530
           Y  L+ L
Sbjct: 642 YSELEKL 648



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 224/410 (54%), Gaps = 11/410 (2%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N +    +++AY+  G+ ++ + +F+++  +D   +NSLI+GY       ++++ ++ M 
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 114 YSNVS--PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
            ++ S   +  T +T+  L+ +   + +G  IHG  +K GF+  V + + L+ MY K G 
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGM 193

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
            S    +FDE+P++NV  +N  I G    G    V  S+R+F +M+ R+  +WT+MI G+
Sbjct: 194 ISCARKVFDELPEKNVVMYNTLIMGLMRCGR---VEDSKRLFFEMRERDSISWTSMITGF 250

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QNG   +A+ +F EM+L++ ++ ++ +  SVL  C  ++ L  GKQ+H + IR +   +
Sbjct: 251 TQNGLDRDAIDIFREMKLEN-LQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDN 309

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           + + +AL+DMY KC ++  A  VF+  +  K+ ++W++++ GYG +G   EAV  ++ M 
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMTC-KNVVSWTAMLVGYGQNGYSEEAVKTFSDMQ 368

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G +PD  T+  V+S+C     + EG + +   + +  I   T +   +V + G+ G +
Sbjct: 369 KYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFIT-VSNALVTLYGKCGSI 427

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPE 459
           + +      +  +   + W ALVS     G +      ++S++   L+P+
Sbjct: 428 EDSHRLFNEISFKDEVT-WTALVSGYAQFGKANETIGLFESMLAHGLKPD 476



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 166/365 (45%), Gaps = 38/365 (10%)

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           KL  E  +      +H   IK     +  L N+L+S Y K G       +FD+MP  N+ 
Sbjct: 17  KLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLY 76

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           SWN  +S ++  G  S       +FD M RR+  +W ++I+GY   G + +++  +  M 
Sbjct: 77  SWNTILSAYSKLGRVS---EMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 249 LKD-RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
             D     N+++  ++L   S    +  G+QIHG  ++      V + + L+DMYSK G 
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGM 193

Query: 308 LDCARRVF------------------------EDSS------FNKDAITWSSIVSGYGLH 337
           + CAR+VF                        EDS         +D+I+W+S+++G+  +
Sbjct: 194 ISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQN 253

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G   +A+ ++ +M     + D  T   VL+ACG    + EG +++  +I T   K    +
Sbjct: 254 GLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT-DYKDNIFV 312

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ-- 455
            + +VDM  +   +  A    K M  +   S W A++     +G SE     +  + +  
Sbjct: 313 ASALVDMYCKCKNIKSAEAVFKKMTCKNVVS-WTAMLVGYGQNGYSEEAVKTFSDMQKYG 371

Query: 456 LEPEN 460
           +EP++
Sbjct: 372 IEPDD 376



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           ++L  C      +  K +H   I+     +  L N LI  Y+K GS+  A +VF D   +
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVF-DQMPH 72

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
            +  +W++I+S Y   G+  E   L++ M     + D ++   ++S     GLI + ++ 
Sbjct: 73  PNLYSWNTILSAYSKLGRVSEMEYLFDAM----PRRDGVSWNSLISGYAGCGLIYQSVKA 128

Query: 382 YN 383
           YN
Sbjct: 129 YN 130


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 196/590 (33%), Positives = 301/590 (51%), Gaps = 71/590 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L+  A    ++  +Q H  I  LG  S   V   LI+ Y +  +   +Q +F+
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD 310

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  +DV  +NS+I+GYVKN   +  +E+F  M    V  D  T+  +      I  L +
Sbjct: 311 ELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLL 370

Query: 140 GMLIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSECL---------------------- 176
           G ++H  SIK   +  +V   N+L+ MY KCG  +  +                      
Sbjct: 371 GKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYV 430

Query: 177 ---------NLFDEMPQRNV--GSWNVR-------ISGHASSGDF-------------SL 205
                     LFDEM  R V    + V        I+G+  SG               S 
Sbjct: 431 REGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSF 490

Query: 206 VVRS--------------RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
           V  +                VF  MK+++V +W  MI GY +N   +EAL LF EMQ + 
Sbjct: 491 VSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES 550

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
           +  P+  ++  +LP C+SL  L  G++IHG+A+R   + D  + NA++DMY KCG L  A
Sbjct: 551 K--PDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLA 608

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
           R +F D   NKD ++W+ +++GYG+HG G EA+  +N+M   G +PD ++ + +L AC  
Sbjct: 609 RSLF-DMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSH 667

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           SGL++EG +I+N +    +I+P  E  AC+VD+L R G L +A  FIK MP++P  +IWG
Sbjct: 668 SGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWG 727

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
           AL+    +H + ++ +   + + +LEPEN   YV L+N+YA + +W+ V +LR  +  RG
Sbjct: 728 ALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRG 787

Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           LKK+PGCSWI I GK + F   D + P +  I  +L  L   M+    SP
Sbjct: 788 LKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSP 837



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 208/432 (48%), Gaps = 42/432 (9%)

Query: 7   RNTFALVTSR---NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
           +N   L+ S    N+        LQ+ A  +S++  ++  S I S G + +  +  KL+ 
Sbjct: 134 KNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVF 193

Query: 64  AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
            Y  CG   + ++VF+ +    ++L+N +I+ Y  +  + E++ LF  M    + P+ +T
Sbjct: 194 MYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYT 253

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
            ++I K    +  +  G  +HGL  K+GF     + NSL+S Y    K      LFDE+ 
Sbjct: 254 FSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELT 313

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
            R+V SWN                                  +MI+GYV+NG  D  + +
Sbjct: 314 DRDVISWN----------------------------------SMISGYVKNGLDDRGIEI 339

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMY 302
           F++M L   ++ +  ++V+V   C+++  L  GK +H ++I+   L+ +V   N L+DMY
Sbjct: 340 FIKM-LVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMY 398

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362
           SKCG L+ A RVFE     K  ++W+S+++GY   G    A+ L+++M   G  PD+  +
Sbjct: 399 SKCGDLNSAIRVFERMD-EKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAV 457

Query: 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
             +L+AC  +G +  G +I +  I    ++  + +   + DM  + G +  A D    M 
Sbjct: 458 TSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK 516

Query: 423 VEPSPSIWGALV 434
            +   S W  ++
Sbjct: 517 KKDVIS-WNTMI 527



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 159/345 (46%), Gaps = 49/345 (14%)

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           A+EL  +   SN   D     +I +L  E K +  G  +  +    G ++D IL   L+ 
Sbjct: 136 AMELLCSSQNSNF--DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVF 193

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MYVKCG   E                                   R VFD++    ++ W
Sbjct: 194 MYVKCGDLKE----------------------------------GRMVFDKLSESKIFLW 219

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
             MI+ Y  +G+  E++ LF +M L+  I+PN  +  S+L   +++  +  G+Q+HG   
Sbjct: 220 NLMISEYSGSGNYGESINLFKQM-LELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLIC 278

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           +   N   ++ N+LI  Y     + CA+++F++ + ++D I+W+S++SGY  +G     +
Sbjct: 279 KLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELT-DRDVISWNSMISGYVKNGLDDRGI 337

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT-----EICA 399
            ++ KM+  G   D+ T+V V  AC      N G  +   V+++Y IK  T         
Sbjct: 338 EIFIKMLVFGVDIDLATMVNVFVACA-----NIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            ++DM  + G L+ A+   + M  E +   W ++++  V  G S+
Sbjct: 393 TLLDMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITGYVREGLSD 436



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 15/169 (8%)

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           + + GDL  A+ L    Q  +    +  +  S+L  C+    +  G+++        +  
Sbjct: 127 FCEVGDLKNAMELLCSSQNSN---FDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMI 183

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           D  L   L+ MY KCG L   R VF+  S +K    W+ ++S Y   G   E++ L+ +M
Sbjct: 184 DGILGVKLVFMYVKCGDLKEGRMVFDKLSESK-IFLWNLMISEYSGSGNYGESINLFKQM 242

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEI-----------YNSVINT 388
           + LG KP+  T   +L        + EG ++           YN+V+N+
Sbjct: 243 LELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNS 291


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 179/527 (33%), Positives = 290/527 (55%), Gaps = 36/527 (6%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           + S TV   L   A  + L L        + +G  S+ +V T L   Y+ CG+   ++L+
Sbjct: 205 FDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLL 264

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F  I   D+  YN++I+GY  N+    ++ LF  +  S    +  ++  +  +      L
Sbjct: 265 FGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHL 324

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
           ++   IHG   K G V +  ++ +L ++Y +  +                          
Sbjct: 325 HLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNE-------------------------- 358

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                   +  +R +FD+   +++ +W AMI+GY QNG  ++A+ LF EMQ K  + PN 
Sbjct: 359 --------IESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQ-KCEVRPNP 409

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           V++ S+L  C+ L  LS GK +H    R+    ++ +  ALIDMY+KCGS+  A+R+F  
Sbjct: 410 VTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSM 469

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               K+A+TW++++SGYGLHG GHEA+ L+N+M+     P  +T + VL AC  +GL+ E
Sbjct: 470 MP-EKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVRE 528

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G EI+ S+++ +  +P  E  AC+VD+LGRAG LD+ALDFI+ MPVEP P +WGAL+ A 
Sbjct: 529 GDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGAC 588

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
           ++H ++ +  LA   L +L+P+N   YV LSN+Y++ + +   A +R ++K R L K+PG
Sbjct: 589 MIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPG 648

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
           C+ I +    H F+  D++HP + +IY ML+ L   MR A      G
Sbjct: 649 CTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETG 695



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 173/365 (47%), Gaps = 56/365 (15%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           ++S RN F  + +R            VS  H+      Q+H+QI+  G  ++    TKL 
Sbjct: 6   IASTRNLFLTLINR------------VSTLHQ----LNQTHAQIILNGLHNDLVTVTKLT 49

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDD 121
              +      Q+ L+F++I + D++LYN LI  +  N+  + A+ L++++  S  + PD+
Sbjct: 50  HKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDN 109

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
           FT A +   +  +    +       SI  GF  D+ + +++++ Y K             
Sbjct: 110 FTYAFVISGASSLGLGLLLHAH---SIVAGFGSDLFVGSAIVACYFK------------- 153

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
                                FS V  +R+VFD M  R+   W  M++G V+N   DEA+
Sbjct: 154 ---------------------FSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAI 192

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
           ++F +M +K  I  +  ++ +VLP  + L  L+ G  I   A++   +    +   L  +
Sbjct: 193 LIFGDM-VKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACL 251

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           YSKCG ++ AR +F       D +++++++SGY  + +   +V L+ +++  G K +  +
Sbjct: 252 YSKCGEIETARLLFGQIG-QPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSS 310

Query: 362 IVGVL 366
           IVG++
Sbjct: 311 IVGLI 315



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 150/346 (43%), Gaps = 48/346 (13%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           LV+     S+++   + V      L LT+  H      G +SN  VST L T Y+   + 
Sbjct: 300 LVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEI 359

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             ++L+F+    K +  +N++I+GY +N    +A+ LF  M    V P+  T+ +I    
Sbjct: 360 ESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSAC 419

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
            ++  L++G  +H L  +  F  ++ ++ +L+ MY KCG  +E   LF  MP++N  +WN
Sbjct: 420 AQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWN 479

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                                             AMI+GY  +G   EAL LF EM L  
Sbjct: 480 ----------------------------------AMISGYGLHGYGHEALNLFNEM-LHS 504

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQI-------HGFAIRKELNHDVSLCNALIDMYSK 304
           R+ P  V+ +SVL  CS    +  G +I       HGF    E  H       ++D+  +
Sbjct: 505 RVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPE--HYA----CMVDLLGR 558

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
            G+LD A               W +++    +H   + A L  +K+
Sbjct: 559 AGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKL 604


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/496 (36%), Positives = 277/496 (55%), Gaps = 37/496 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L+L ++ H +I+  G    P V T L+  YA CG  ++++++F+ +  K+V  +  LI G
Sbjct: 164 LQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAG 223

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y +    + ALEL   M  + V+P+  T A+I +       L  G  +H   I+ G+  +
Sbjct: 224 YAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRE 283

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + + NSL++MY KCG   E   LF ++P                                
Sbjct: 284 LWVVNSLITMYCKCGGLEEARKLFSDLPH------------------------------- 312

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
              R+V  WTAM+ GY Q G  DEA+ LF  MQ +  I+P+K++  SVL +CSS   L  
Sbjct: 313 ---RDVVTWTAMVTGYAQLGFHDEAINLFRRMQ-QQGIKPDKMTFTSVLTSCSSPAFLQE 368

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY- 334
           GK+IH   +    N DV L +AL+ MY+KCGS+D A  VF   S  ++ + W++I++G  
Sbjct: 369 GKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTAIITGCC 427

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG+  EA+  +++M   G KPD +T   VLSAC   GL+ EG + + S+   Y IKP 
Sbjct: 428 AQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPM 487

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E  +C VD+LGRAG L+ A + I +MP  P PS+WGAL+SA  +H + E  + A ++++
Sbjct: 488 VEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVL 547

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +L+P++   YV+LS++YA++ R++   ++R +M+ R + K PG SWI + GK H F V D
Sbjct: 548 KLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVED 607

Query: 515 KAHPCSVSIYEMLDDL 530
           K+HP S  IY  L  L
Sbjct: 608 KSHPESEQIYVELGKL 623



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 140/318 (44%), Gaps = 37/318 (11%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    LQ   T  +L+  K+ H  I+  G+    +V   LIT Y  CG   +++ +F+ +
Sbjct: 251 TFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDL 310

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            H+DV  + +++ GY +   H+EA+ LF  M    + PD  T  ++         L  G 
Sbjct: 311 PHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGK 370

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH   +  G+ +DV L ++L+SMY KCG   +   +F++M +RNV +W   I+G  +  
Sbjct: 371 RIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCA-- 428

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                          Q+G   EAL  F +M+ K  I+P+KV+  
Sbjct: 429 -------------------------------QHGRCREALEYFDQMK-KQGIKPDKVTFT 456

Query: 262 SVLPTCSSLIGL--SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           SVL  C+  +GL   G K      +   +   V   +  +D+  + G L+ A  V     
Sbjct: 457 SVLSACTH-VGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMP 515

Query: 320 FNKDAITWSSIVSGYGLH 337
           F      W +++S   +H
Sbjct: 516 FIPGPSVWGALLSACRVH 533


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/519 (34%), Positives = 287/519 (55%), Gaps = 34/519 (6%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           F    L++AYA  G     +  F+ +  +D   YN+ I G+  N    E+LELF  M   
Sbjct: 90  FSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQRE 149

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
              P ++T+ +I   S ++ DL  G  IHG  I   F+ +V + N+L  MY KCG+  + 
Sbjct: 150 GFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQA 209

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGD----------------------FSLVV------ 207
             LFD + ++N+ SWN+ ISG+A +G                        S ++      
Sbjct: 210 RWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQC 269

Query: 208 ----RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                +RRVF + K +++  WTAM+ GY +NG  ++AL+LF EM L + IEP+  +L SV
Sbjct: 270 GRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLL-EHIEPDSYTLSSV 328

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           + +C+ L  L  G+ +HG +I   LN+++ + +ALIDMYSKCG +D AR VF      ++
Sbjct: 329 VSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMP-TRN 387

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            ++W++++ G   +G   +A+ L+  M+    KPD +T +G+LSAC     I +G E ++
Sbjct: 388 VVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFD 447

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           S+ N + + PT +  AC+V++LGR G++++A+  IK M  +P   IW  L+S     G+ 
Sbjct: 448 SITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDI 507

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
              ++A + L +L+P     Y+ LSN+YAS  RW  VA +R +MK + +KK  G SWI I
Sbjct: 508 VNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEI 567

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
             + H F+  D+ HP S  IYE L+ LI  ++    +P+
Sbjct: 568 DNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPN 606



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 158/300 (52%), Gaps = 22/300 (7%)

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            D  L N L+ +Y K GK  +  NLFD+M +R++ SWN  +S +A SG    +   +  F
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGS---IQNLKATF 112

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D+M  R+  ++   I G+  N    E+L LF  MQ ++  EP + ++VS+L   + L  L
Sbjct: 113 DRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQ-REGFEPTEYTIVSILNASAQLSDL 171

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GKQIHG  I +    +V + NAL DMY+KCG ++ AR +F D    K+ ++W+ ++SG
Sbjct: 172 RYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLF-DCLTKKNLVSWNLMISG 230

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y  +G+  + + L ++M   G  PD +T+  +++A  + G ++E   +++        K 
Sbjct: 231 YAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFS------EFKE 284

Query: 394 TTEICACVVDMLGRA--GQLDRALDFIKTM---PVEPSPSIWGALVS-----ASVMHGNS 443
              +C   + M+G A  G+ + AL     M    +EP      ++VS     AS+ HG +
Sbjct: 285 KDIVCWTAM-MVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQA 343



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 141/290 (48%), Gaps = 48/290 (16%)

Query: 50  GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELF 109
           GH+ +    + +I AY  CG+  +++ VF+  + KD+  + +++ GY KN    +AL LF
Sbjct: 251 GHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLF 310

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
           + M   ++ PD +TL+++     ++  L+ G  +HG SI  G   +++++++L+ MY KC
Sbjct: 311 NEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKC 370

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           G   +  ++F+ MP RNV SWN                                  AMI 
Sbjct: 371 GFIDDARSVFNLMPTRNVVSWN----------------------------------AMIV 396

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-------HGF 282
           G  QNG   +AL LF  M L+ + +P+ V+ + +L  C     +  G++        HG 
Sbjct: 397 GCAQNGHDKDALELFENM-LQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHG- 454

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
            +   L+H   + N L     + G ++ A  + ++ + + D + WS+++S
Sbjct: 455 -MTPTLDHYACMVNLL----GRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 197/541 (36%), Positives = 298/541 (55%), Gaps = 44/541 (8%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL--CGQPTQSQLVFNSIQHKDVYLYNS 91
           R LKL    H+QI+  G  +      KLI+  A+   G    +Q +F+ I   + ++YNS
Sbjct: 2   RGLKLL---HAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNS 58

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           LI GY  +    +A+ LF  M  S +SP++FTL  + K  G        +L+HGL+IK+G
Sbjct: 59  LIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLG 118

Query: 152 F----------------------------------VVDVILANSLMSMYVKCGKFSECLN 177
                                              ++D+I+ N+L+ MY KCG       
Sbjct: 119 IGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQA 178

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           +FD   ++NV SW   IS +A  G   +   +R++FDQM  +NV +W +MI+ Y++ G  
Sbjct: 179 IFDRTQEKNVVSWTSMISAYAQHGSIEV---ARQIFDQMPGKNVVSWNSMISCYLREGQY 235

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
            EAL LF +M+   R+ P++ +LVS+L  CS L  L  GK+IH + +  +  + V+L N+
Sbjct: 236 REALDLFNKMR-NSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNS 294

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           LIDMY+KCG +  A  +F +    K+ ++W+ I+    LHG G EA+ L+ +M   G+ P
Sbjct: 295 LIDMYAKCGPVVTALDIFLEMP-GKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLP 353

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           D IT+ G+LSAC  SGL++ GL  ++ +   YR+    E  AC+VD+LGR G L  A++ 
Sbjct: 354 DEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIEL 413

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
           I  MP++P   +WGAL+ A  +HGN E+     K L++LEP +   YV +SN+Y  ++RW
Sbjct: 414 IGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRW 473

Query: 478 DAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGA 537
           + V ++R +M DRG+KK    S I I G  + F V DK H  S SIY MLD L   +R A
Sbjct: 474 EDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHLRSA 533

Query: 538 A 538
            
Sbjct: 534 G 534



 Score = 38.5 bits (88), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            AT+   L   +    L + K+ H+ ILS        +   LI  YA CG    +  +F 
Sbjct: 254 EATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFL 313

Query: 80  SIQHKDVYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTL 124
            +  K++  +N +I G +  HG   EA++LF  M      PD+ TL
Sbjct: 314 EMPGKNLVSWNVII-GALALHGCGLEAIKLFEEMQADGTLPDEITL 358


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 299/560 (53%), Gaps = 40/560 (7%)

Query: 19   TSATVQHFLQVSATHRSLKLTKQSHS-QILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
            T  TV  FL  SA   +L   KQ H+  IL+   + N  + + +I  Y+  G    ++LV
Sbjct: 1377 TRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDN-ILGSSIINFYSKVGLIEDAELV 1435

Query: 78   FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
            F+ +  KDV  +N LI+ YV++H   +AL +   M   N+  D  TL++I   S    ++
Sbjct: 1436 FSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNI 1495

Query: 138  NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
             +G   H   I+     DV++ANS++ MY KC +  +   +FD   +R++  WN  ++ +
Sbjct: 1496 KLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAY 1555

Query: 198  ASSG------------DFSLVV--------------------RSRRVFDQMK----RRNV 221
            A  G             F  V                      ++ +F QM+    + N+
Sbjct: 1556 AQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNL 1615

Query: 222  YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
              WT +I+G  Q+G   EA++ F +MQ +  I P+  S+ SVL  C+ +  L  G+ IHG
Sbjct: 1616 ITWTTLISGLAQSGFGYEAILFFQKMQ-EAGIRPSIASITSVLLACTDIPSLWYGRAIHG 1674

Query: 282  FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
            F  R E    V +  +L+DMY+KCGS+D A++VF   S +K+   +++++S Y LHG+  
Sbjct: 1675 FITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMS-SKELPIYNAMISAYALHGQAV 1733

Query: 342  EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
            EA+ L+  +   G +PD IT   +LSAC  +GL+NEGL ++  +++ + + P  E   CV
Sbjct: 1734 EALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCV 1793

Query: 402  VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
            V +L R G LD AL  I TMP +P   I G+L++A   H   E+ +   K L +LEP N 
Sbjct: 1794 VSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNS 1853

Query: 462  SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
             NYV+LSN YA++ RW  V+ +R +MK RGL+K+PGCSWI   GK + F   D +HP + 
Sbjct: 1854 GNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTE 1913

Query: 522  SIYEMLDDLILIMRGAAASP 541
             IY ML  L+  MR     P
Sbjct: 1914 EIYAMLAMLLSEMRFMGYVP 1933



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 221/466 (47%), Gaps = 44/466 (9%)

Query: 25   HFLQVSATHRSLKLTKQSHSQILSLGHI--SNPFVSTKLITAYALCGQPTQSQLVFNSIQ 82
              LQ     R+L   +Q H++IL  G     N +V TKL+  YA C  P  +  +F+ ++
Sbjct: 1179 ELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLR 1238

Query: 83   HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
             ++V+ + +++    +     +AL  F  M  + V PD+F L  + K  G ++ + +G  
Sbjct: 1239 VRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKG 1298

Query: 143  IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
            +HG  +K+GF   V +++SL+ MY KCG   +   +FD M ++NV +WN           
Sbjct: 1299 VHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWN----------- 1347

Query: 203  FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                                   +MI GYVQNG   EA+ +F +M+++  IEP +V++ S
Sbjct: 1348 -----------------------SMIVGYVQNGLNQEAIDVFYDMRVEG-IEPTRVTVAS 1383

Query: 263  VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
             L   ++L  L  GKQ H  AI   L+ D  L +++I+ YSK G ++ A  VF      K
Sbjct: 1384 FLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVF-SRMLEK 1442

Query: 323  DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
            D +TW+ ++S Y  H +  +A+ + + M     + D +T+  +LSA   +  I  G E +
Sbjct: 1443 DVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGH 1502

Query: 383  NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
               I    ++    +   ++DM  +  ++D A     +   E    +W  L++A    G 
Sbjct: 1503 CYCIRR-NLESDVVVANSIIDMYAKCERIDDARKVFDST-TERDLVLWNTLLAAYAQVG- 1559

Query: 443  SEMQDLAYKSLIQLEPEN-PSNYVSLSNLYASSRRWDAVAELRTMM 487
              +   A K   Q++ ++ P N +S +++     R   V E + M 
Sbjct: 1560 --LSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMF 1603



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 153/404 (37%), Gaps = 108/404 (26%)

Query: 3    LSSARNTFALVTSRN--YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
            +  A N   L+ S N  + S T+   L  SA   ++KL K+ H   +     S+  V+  
Sbjct: 1460 VGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANS 1519

Query: 61   LITAYALCGQPTQSQLVFNSIQHKDVYLYNSL---------------------------- 92
            +I  YA C +   ++ VF+S   +D+ L+N+L                            
Sbjct: 1520 IIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPN 1579

Query: 93   -------INGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT-ISKLS------------- 131
                   I G+++N   NEA ++FS M      P+  T  T IS L+             
Sbjct: 1580 VISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQ 1639

Query: 132  ---------------------GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
                                  +I  L  G  IHG   +  F + V +A SL+ MY KCG
Sbjct: 1640 KMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCG 1699

Query: 171  KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
               E   +F  M  + +  +N                                  AMI+ 
Sbjct: 1700 SIDEAKKVFHMMSSKELPIYN----------------------------------AMISA 1725

Query: 231  YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-LN 289
            Y  +G   EAL LF  +Q K+ IEP+ ++  S+L  CS    ++ G  +    + K  +N
Sbjct: 1726 YALHGQAVEALALFKHLQ-KEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMN 1784

Query: 290  HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
              +     ++ + S+CG+LD A R+     F  DA    S+++ 
Sbjct: 1785 PIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTA 1828


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 303/523 (57%), Gaps = 20/523 (3%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLIT-AYALCGQPTQS--QLVFNSIQHKDVYLYNS 91
           SL   K+ H+QI       + +V TKL+    AL   P  S  +L+F+ +   + + + +
Sbjct: 20  SLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWTA 79

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           LI  Y      ++AL  +S+M    VSP  FT + +      ++   +G  +H  ++ +G
Sbjct: 80  LIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLG 139

Query: 152 -FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
            F  D+ + N+++ MYVKCG       +FDEMP+R+V SW   I  +   GD      +R
Sbjct: 140 GFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRA---AR 196

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
            +FD +  +++  WTAM+ GY QN    +AL +F  ++  + +E ++V+LV V+  C+ L
Sbjct: 197 DLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLR-DEGVEIDEVTLVGVISACAQL 255

Query: 271 IGLSGGKQIH------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
                   I       GF +      +V + +ALIDMYSKCG+++ A  VF+     ++ 
Sbjct: 256 GASKYANWIRDIAESSGFGV----GDNVLVGSALIDMYSKCGNVEEAYDVFKGMR-ERNV 310

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
            ++SS++ G+ +HG+   A+ L+  M+  G KP+ +T VGVL+AC  +GL+++G +++ S
Sbjct: 311 FSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFAS 370

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +   Y + PT E+ AC+ D+L RAG L++AL  ++TMP+E   ++WGAL+ AS +HGN +
Sbjct: 371 MEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPD 430

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI- 503
           + ++A K L +LEP+N  NY+ LSN YAS+ RWD V+++R +++++ LKK+PG SW+   
Sbjct: 431 VAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAK 490

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
           +G  H F   D +HP    I + L+DL+  ++G    P+L  +
Sbjct: 491 NGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSL 533


>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic; Flags: Precursor
 gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/493 (34%), Positives = 287/493 (58%), Gaps = 9/493 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H++I+   H  + FV  +LI   +       +  VF+ + + +VYLY ++I+G+V +   
Sbjct: 49  HAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRS 108

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            + + L+  M +++V PD++ + ++ K      DL V   IH   +K+GF     +   +
Sbjct: 109 ADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKM 164

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           M +Y K G+      +FDEMP R+  +  V I+ ++  G    +  +  +F  +K ++  
Sbjct: 165 MEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECG---FIKEALELFQDVKIKDTV 221

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            WTAMI+G V+N ++++AL LF EMQ+++ +  N+ + V VL  CS L  L  G+ +H F
Sbjct: 222 CWTAMIDGLVRNKEMNKALELFREMQMEN-VSANEFTAVCVLSACSDLGALELGRWVHSF 280

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
              + +     + NALI+MYS+CG ++ ARRVF     +KD I++++++SG  +HG   E
Sbjct: 281 VENQRMELSNFVGNALINMYSRCGDINEARRVFRVMR-DKDVISYNTMISGLAMHGASVE 339

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+  +  MV  G +P+ +T+V +L+AC   GL++ GLE++NS+   + ++P  E   C+V
Sbjct: 340 AINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIV 399

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGR G+L+ A  FI+ +P+EP   + G L+SA  +HGN E+ +   K L + E  +  
Sbjct: 400 DLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSG 459

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            YV LSNLYASS +W    E+R  M+D G++K PGCS I +  + H F V D AHP   +
Sbjct: 460 TYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEA 519

Query: 523 IYEMLDDLILIMR 535
           IY+ L +L  I+R
Sbjct: 520 IYQRLQELNRILR 532



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 153/382 (40%), Gaps = 68/382 (17%)

Query: 36  LKLTKQSHSQILSLGHISNPFV-------------------------------STKLITA 64
           LK+ ++ H+Q+L LG  S+  V                               +T +I  
Sbjct: 139 LKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINC 198

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y+ CG   ++  +F  ++ KD   + ++I+G V+N   N+ALELF  M   NVS ++FT 
Sbjct: 199 YSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTA 258

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
             +     ++  L +G  +H         +   + N+L++MY +CG  +E   +F  M  
Sbjct: 259 VCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRD 318

Query: 185 RNVGSWNVRISGHASSG-DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
           ++V S+N  ISG A  G     +   R + ++  R N     A++N     G LD  L +
Sbjct: 319 KDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEV 378

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           F  M+    +EP                      QI  +               ++D+  
Sbjct: 379 FNSMKRVFNVEP----------------------QIEHYG-------------CIVDLLG 403

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           + G L+ A R  E+     D I   +++S   +HG       +  ++      PD  T V
Sbjct: 404 RVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLF-ESENPDSGTYV 462

Query: 364 GVLSACGRSGLINEGLEIYNSV 385
            + +    SG   E  EI  S+
Sbjct: 463 LLSNLYASSGKWKESTEIRESM 484



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 6/173 (3%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V++  +T+  V   L   +   +L+L +  HS + +     + FV   LI  Y+ CG   
Sbjct: 251 VSANEFTAVCV---LSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDIN 307

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
           +++ VF  ++ KDV  YN++I+G   +    EA+  F +M      P+  TL  +     
Sbjct: 308 EARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACS 367

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMP 183
               L++G+ +   S+K  F V+  + +   ++ +  + G+  E     + +P
Sbjct: 368 HGGLLDIGLEVFN-SMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIP 419


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/514 (33%), Positives = 288/514 (56%), Gaps = 29/514 (5%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
            N    T ++  Y    Q  +++ +F  +  ++V  +N++++GY +N    +AL+LF  M
Sbjct: 62  KNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRM 121

Query: 113 YYSNVSPDDFTLATI---------SKLSGEIKDLNV---GMLIHGLSIKIGFVVD----- 155
              NV   +  +  +          +L  ++KD +V     ++ GL+ K G V D     
Sbjct: 122 PERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLA-KNGRVEDARALF 180

Query: 156 -------VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
                  V+  N++++ Y +  +  E L LF  MP+R++ SWN  I+G   +G+ +   R
Sbjct: 181 DQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELN---R 237

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           + ++F +M+ +NV  WTAM+ GYVQ+G  +EAL +F++M   + ++PN  + V+VL  CS
Sbjct: 238 AEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACS 297

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF-NKDAITW 327
            L GL+ G+QIH    +        + +ALI+MYSKCG L  AR++F+D     +D I+W
Sbjct: 298 DLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISW 357

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           + +++ Y  HG G EA+ L+N+M  LG   + +T VG+L+AC  +GL+ EG + ++ ++ 
Sbjct: 358 NGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILK 417

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
              I+   +  AC+VD+ GRAG+L  A + I+ +  E   ++WGAL++   +HGN+++  
Sbjct: 418 NRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGK 477

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
           L  + ++++EP+N   Y  LSN+YAS  +W   A +R  MKD GLKK PGCSWI +    
Sbjct: 478 LVAEKILKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTV 537

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             F V DK H     +  +L DL   M+ A   P
Sbjct: 538 QVFVVGDKPHSQYEPLGHLLHDLHTKMKKAGDMP 571



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 193/398 (48%), Gaps = 39/398 (9%)

Query: 67  LC--GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           LC  G+   ++ VF  +  +D+ L+ ++I GY+K     EA +LF              +
Sbjct: 11  LCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRW-----DAKKNVV 65

Query: 125 ATISKLSGEIKDLNVG---MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
              + ++G IK   V     L + + ++     +V+  N+++  Y + G   + L+LF  
Sbjct: 66  TWTAMVNGYIKFNQVKEAERLFYEMPLR-----NVVSWNTMVDGYARNGLTQQALDLFRR 120

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           MP+RNV SWN  I+     G    +  ++R+FDQMK R+V +WT M+ G  +NG +++A 
Sbjct: 121 MPERNVVSWNTIITALVQCGR---IEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDAR 177

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            LF +M ++     N VS  +++   +    L    Q+     ++    D+   N +I  
Sbjct: 178 ALFDQMPVR-----NVVSWNAMITGYAQNRRLDEALQL----FQRMPERDMPSWNTMITG 228

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDII 360
           + + G L+ A ++F +    K+ ITW+++++GY  HG   EA+ ++ KM+     KP+  
Sbjct: 229 FIQNGELNRAEKLFGEMQ-EKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTG 287

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T V VL AC     + EG +I+  +  T   + +T + + +++M  + G+L  A      
Sbjct: 288 TFVTVLGACSDLAGLTEGQQIHQMISKTV-FQDSTCVVSALINMYSKCGELHTARKMFDD 346

Query: 421 MPVEPSPSI-WGALVSASVMHGN--------SEMQDLA 449
             +     I W  +++A   HG         +EMQ+L 
Sbjct: 347 GLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELG 384



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 142/286 (49%), Gaps = 24/286 (8%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK-R 218
           N  +S   + G+      +F+EMP+R++G W   I+G+   G   ++  +R++FD+   +
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCG---MIREARKLFDRWDAK 61

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           +NV  WTAM+NGY++   + EA  LF EM L++ +  N         T       +G  Q
Sbjct: 62  KNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWN---------TMVDGYARNGLTQ 112

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
                 R+    +V   N +I    +CG ++ A+R+F D   ++D ++W+++V+G   +G
Sbjct: 113 QALDLFRRMPERNVVSWNTIITALVQCGRIEDAQRLF-DQMKDRDVVSWTTMVAGLAKNG 171

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           +  +A  L+++M       ++++   +++   ++  ++E L+++  +         T I 
Sbjct: 172 RVEDARALFDQMPV----RNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMIT 227

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
             +     + G+L+RA      M  E +   W A+++  V HG SE
Sbjct: 228 GFI-----QNGELNRAEKLFGEMQ-EKNVITWTAMMTGYVQHGLSE 267



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 13/203 (6%)

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            D+ L   +I  Y KCG +  AR++F+     K+ +TW+++V+GY    +  EA  L+ +
Sbjct: 30  RDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGYIKFNQVKEAERLFYE 89

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M       ++++   ++    R+GL  + L+++  +     +   T I A V    GR  
Sbjct: 90  MPL----RNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITALV--QCGRIE 143

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
              R  D +K   V      W  +V+    +G  E    A     Q+   N  ++ ++  
Sbjct: 144 DAQRLFDQMKDRDVVS----WTTMVAGLAKNGRVED---ARALFDQMPVRNVVSWNAMIT 196

Query: 470 LYASSRRWDAVAELRTMMKDRGL 492
            YA +RR D   +L   M +R +
Sbjct: 197 GYAQNRRLDEALQLFQRMPERDM 219


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 299/560 (53%), Gaps = 40/560 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHS-QILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           T  TV  FL  SA   +L   KQ H+  IL+   + N  + + +I  Y+  G    ++LV
Sbjct: 282 TRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDN-ILGSSIINFYSKVGLIEDAELV 340

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F+ +  KDV  +N LI+ YV++H   +AL +   M   N+  D  TL++I   S    ++
Sbjct: 341 FSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNI 400

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            +G   H   I+     DV++ANS++ MY KC +  +   +FD   +R++  WN  ++ +
Sbjct: 401 KLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAY 460

Query: 198 ASSG------------DFSLVV--------------------RSRRVFDQMK----RRNV 221
           A  G             F  V                      ++ +F QM+    + N+
Sbjct: 461 AQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNL 520

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
             WT +I+G  Q+G   EA++ F +MQ +  I P+  S+ SVL  C+ +  L  G+ IHG
Sbjct: 521 ITWTTLISGLAQSGFGYEAILFFQKMQ-EAGIRPSIASITSVLLACTDIPSLWYGRAIHG 579

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           F  R E    V +  +L+DMY+KCGS+D A++VF   S +K+   +++++S Y LHG+  
Sbjct: 580 FITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMS-SKELPIYNAMISAYALHGQAV 638

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           EA+ L+  +   G +PD IT   +LSAC  +GL+NEGL ++  +++ + + P  E   CV
Sbjct: 639 EALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCV 698

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           V +L R G LD AL  I TMP +P   I G+L++A   H   E+ +   K L +LEP N 
Sbjct: 699 VSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNS 758

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
            NYV+LSN YA++ RW  V+ +R +MK RGL+K+PGCSWI   GK + F   D +HP + 
Sbjct: 759 GNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTE 818

Query: 522 SIYEMLDDLILIMRGAAASP 541
            IY ML  L+  MR     P
Sbjct: 819 EIYAMLAMLLSEMRFMGYVP 838



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 221/465 (47%), Gaps = 44/465 (9%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHI--SNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83
            LQ     R+L   +Q H++IL  G     N +V TKL+  YA C  P  +  +F+ ++ 
Sbjct: 85  LLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRV 144

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           ++V+ + +++    +     +AL  F  M  + V PD+F L  + K  G ++ + +G  +
Sbjct: 145 RNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGV 204

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HG  +K+GF   V +++SL+ MY KCG   +   +FD M ++NV +WN            
Sbjct: 205 HGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWN------------ 252

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                                 +MI GYVQNG   EA+ +F +M+++  IEP +V++ S 
Sbjct: 253 ----------------------SMIVGYVQNGLNQEAIDVFYDMRVEG-IEPTRVTVASF 289

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           L   ++L  L  GKQ H  AI   L+ D  L +++I+ YSK G ++ A  VF      KD
Sbjct: 290 LSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVF-SRMLEKD 348

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            +TW+ ++S Y  H +  +A+ + + M     + D +T+  +LSA   +  I  G E + 
Sbjct: 349 VVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHC 408

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
             I    ++    +   ++DM  +  ++D A     +   E    +W  L++A    G  
Sbjct: 409 YCIRR-NLESDVVVANSIIDMYAKCERIDDARKVFDS-TTERDLVLWNTLLAAYAQVG-- 464

Query: 444 EMQDLAYKSLIQLEPEN-PSNYVSLSNLYASSRRWDAVAELRTMM 487
            +   A K   Q++ ++ P N +S +++     R   V E + M 
Sbjct: 465 -LSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMF 508



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 153/404 (37%), Gaps = 108/404 (26%)

Query: 3   LSSARNTFALVTSRN--YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           +  A N   L+ S N  + S T+   L  SA   ++KL K+ H   +     S+  V+  
Sbjct: 365 VGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANS 424

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSL---------------------------- 92
           +I  YA C +   ++ VF+S   +D+ L+N+L                            
Sbjct: 425 IIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPN 484

Query: 93  -------INGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT-ISKLS------------- 131
                  I G+++N   NEA ++FS M      P+  T  T IS L+             
Sbjct: 485 VISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQ 544

Query: 132 ---------------------GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
                                 +I  L  G  IHG   +  F + V +A SL+ MY KCG
Sbjct: 545 KMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCG 604

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
              E   +F  M  + +  +N                                  AMI+ 
Sbjct: 605 SIDEAKKVFHMMSSKELPIYN----------------------------------AMISA 630

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-LN 289
           Y  +G   EAL LF  +Q K+ IEP+ ++  S+L  CS    ++ G  +    + K  +N
Sbjct: 631 YALHGQAVEALALFKHLQ-KEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMN 689

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             +     ++ + S+CG+LD A R+     F  DA    S+++ 
Sbjct: 690 PIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTA 733


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/502 (35%), Positives = 271/502 (53%), Gaps = 35/502 (6%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H   +  G  S+ F    L   YA CG    ++ VF  I+  D+  +N++I G+   
Sbjct: 321 RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASV 380

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               E+   FS M ++ + P+D T+ ++     E   LN G+ +H   +K+GF +D+ + 
Sbjct: 381 SNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVC 440

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           NSL+SMY KC   ++ L +F+++  +                                  
Sbjct: 441 NSLLSMYSKCSNLNDALQVFEDIGNK---------------------------------A 467

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           ++ +W  ++   +Q     E L L  ++    RI+P+ V+L +VL +   +     G QI
Sbjct: 468 DIVSWNTLLTACLQQNQAGEVLRL-TKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQI 526

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H F ++  LN D+S+ NALI+MY+KCGSL+CAR++F DS  N D I+WSS++ GY   G 
Sbjct: 527 HCFIMKSGLNLDISVSNALINMYTKCGSLECARKMF-DSIGNPDIISWSSLIVGYAQAGC 585

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           G EA  L+  M  LG KP+ IT VG+L+AC   G++ EGL++Y ++   YRI PT E C+
Sbjct: 586 GKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCS 645

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VD+L RAG LD A DFIK MP  P   +W  L++A  +HGN E+   A +++++++P 
Sbjct: 646 CMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPS 705

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           N +  V L N++ASS  W   A LR+ M+   + K PG SWI I  K H F   D  HP 
Sbjct: 706 NSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPE 765

Query: 520 SVSIYEMLDDLILIMRGAAASP 541
              IY ML++L+L +      P
Sbjct: 766 RGKIYTMLEELMLQILDDGCDP 787



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 218/473 (46%), Gaps = 46/473 (9%)

Query: 6   ARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           A + F   +S    S T  H +   ++ RSL+  ++ H  +L+  +  +  +   +++ Y
Sbjct: 84  AFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMY 143

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125
             CG   +++ +F+S+  K+V  + S+I+GY +    + A+ L+  M  S   PD FT  
Sbjct: 144 GKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFG 203

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           +I K    + D  +   +H   +K  F  D+I  N+L+SMY K  + ++ +N+F  +  +
Sbjct: 204 SIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIK 263

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
           ++ SW                                   +MI G+ Q G   EAL  F 
Sbjct: 264 DLISWG----------------------------------SMIAGFSQLGYELEALCHFR 289

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
           EM  +   +PN+    S    CS L+    G+QIHG  I+  L  D+    +L DMY+KC
Sbjct: 290 EMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKC 349

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           G L+ AR VF       D + W++I++G+       E+   +++M   G  P+ +T++ +
Sbjct: 350 GFLESARTVFYHIE-KPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSL 408

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L AC    ++N G+++++ ++          +C  ++ M  +   L+ AL   + +  + 
Sbjct: 409 LCACSEPVMLNHGIQVHSYIVKM-GFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKA 467

Query: 426 SPSIWGALVSASVMHGNS----EMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
               W  L++A +    +     +  L + S I+       ++V+L+N+  SS
Sbjct: 468 DIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIK------PDHVTLTNVLVSS 514



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 182/400 (45%), Gaps = 38/400 (9%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
            KL +Q H+ +L     ++      LI+ Y    Q   +  VF+ I  KD+  + S+I G
Sbjct: 215 FKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAG 274

Query: 96  YVKNHGHNEALELFSNMYYSNV-SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           + +     EAL  F  M   +V  P++F   +      ++ + + G  IHGL IK G   
Sbjct: 275 FSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGS 334

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+    SL  MY KCG                                   +  +R VF 
Sbjct: 335 DLFAGCSLCDMYAKCG----------------------------------FLESARTVFY 360

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            +++ ++ AW A+I G+    +  E+   F +M+    + PN V+++S+L  CS  + L+
Sbjct: 361 HIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLV-PNDVTVLSLLCACSEPVMLN 419

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G Q+H + ++   N D+ +CN+L+ MYSKC +L+ A +VFED     D ++W+++++  
Sbjct: 420 HGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTAC 479

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
               +  E + L   M     KPD +T+  VL + G+      G +I+  ++ +  +   
Sbjct: 480 LQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKS-GLNLD 538

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
             +   +++M  + G L+ A     ++   P    W +L+
Sbjct: 539 ISVSNALINMYTKCGSLECARKMFDSIG-NPDIISWSSLI 577



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 132/277 (47%), Gaps = 17/277 (6%)

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           EAL  F   Q         V+   ++  CSSL  L  G++IH   +      D+ L N +
Sbjct: 80  EALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHI 139

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           + MY KCGSL  AR +F DS   K+ ++W+S++SGY  +G+   A+ LY +M+  G  PD
Sbjct: 140 LSMYGKCGSLKEARNMF-DSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198

Query: 359 IITIVGVLSACGRSGLINEGL--EIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRA 414
             T   ++ +C  SGL +  L  +++  V+ +   +   ++ A   ++ M  +  Q+  A
Sbjct: 199 HFTFGSIVKSC--SGLDDFKLARQLHAHVLKS---EFGADLIAQNALISMYTKFSQMADA 253

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA-YKSLIQLEPENPSNYVSLSNLYAS 473
           ++    + ++   S WG++++     G  E++ L  ++ ++      P+ +V  S   A 
Sbjct: 254 INVFSRIIIKDLIS-WGSMIAGFSQLG-YELEALCHFREMLSQSVYQPNEFVFGSAFSAC 311

Query: 474 SR--RWDAVAELRTMMKDRGLKKS--PGCSWISIHGK 506
           S+    D   ++  +    GL      GCS   ++ K
Sbjct: 312 SKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAK 348



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L  S    S ++  Q H  I+  G   +  VS  LI  Y  CG    ++ +F+SI
Sbjct: 506 TLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSI 565

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            + D+  ++SLI GY +     EA ELF  M    V P++ T   I      I     GM
Sbjct: 566 GNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHI-----GM 620

Query: 142 LIHGLSI 148
           +  GL +
Sbjct: 621 VEEGLKL 627


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/504 (34%), Positives = 270/504 (53%), Gaps = 43/504 (8%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H  ++  G   NPFV T LI  Y+  G    +  +F  +  ++V  + S+INGY+ +
Sbjct: 219 EQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILS 278

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
                A  LF      +++P+                                  DV+L 
Sbjct: 279 ADLVSARRLF------DLAPER---------------------------------DVVLW 299

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N ++S Y++ G   E   LF EMP R+V  WN  + G+A++G+   +     +F++M  R
Sbjct: 300 NIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEAL---EGLFEEMPER 356

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N+++W A+I GY  NG   E L  F  M  +  + PN  +LV+VL  C+ L  L  GK +
Sbjct: 357 NIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWV 416

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H +A    L  +V + NAL+DMY+KCG ++ A  VF      KD I+W++++ G  +H +
Sbjct: 417 HVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMD-TKDLISWNTLIGGLAMHSR 475

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           G +A+ L+ +M   G KPD IT +G+L AC   GL+ +G   + S+ + Y I P  E   
Sbjct: 476 GADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYG 535

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VDML RAG+L++A  F++ MPVE    IW  L+ A  ++ N E+ +LA + LI+LEP+
Sbjct: 536 CMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPK 595

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           NP+NYV LSN+Y  + RW+ VA L+  M+D G KK PGCS I ++     F   D+ HP 
Sbjct: 596 NPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQ 655

Query: 520 SVSIYEMLDDLILIMRGAAASPHL 543
              IY +L  L+ ++R     P L
Sbjct: 656 IEEIYGVLRGLVKVLRSFGYVPDL 679



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 2/126 (1%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           +R++FDQ+   N+  W +M  GY Q+    E + LF +M+  D I PN  +   VL +C 
Sbjct: 152 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMD-IRPNCFTFPVVLKSCG 210

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            +  L  G+Q+H F I+     +  +   LIDMYS  G++  A ++F +  F ++ + W+
Sbjct: 211 KINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCE-MFERNVVAWT 269

Query: 329 SIVSGY 334
           S+++GY
Sbjct: 270 SMINGY 275



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 46/107 (42%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT+   L   A   +L L K  H    S G   N +V   L+  YA CG    +  VF  
Sbjct: 395 ATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRG 454

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           +  KD+  +N+LI G   +    +AL LF  M  +   PD  T   I
Sbjct: 455 MDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 501



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           QI    I     ++  +   L+ + +    +  AR++F D   + +   W+S+  GY   
Sbjct: 119 QIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLF-DQIPDPNIALWNSMFRGYAQS 177

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT-YRIKPTTE 396
               E V L+ +M  +  +P+  T   VL +CG+   + EG +++  +I   +R  P   
Sbjct: 178 ESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPF-- 235

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           +   ++DM    G +  A      M  E +   W ++++  ++  +     ++ + L  L
Sbjct: 236 VGTTLIDMYSAGGTVGDAYKIFCEM-FERNVVAWTSMINGYILSADL----VSARRLFDL 290

Query: 457 EPE 459
            PE
Sbjct: 291 APE 293


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/500 (35%), Positives = 283/500 (56%), Gaps = 6/500 (1%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           +F+      +S    K+ ++ I+  G   + F+ TK++           +  +FN + + 
Sbjct: 12  YFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNP 71

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLI 143
           +V+LYNS+I  Y  N  + + + ++  +   +   PD FT   + K    +    +G  +
Sbjct: 72  NVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQV 131

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HG   K G    V+  N+L+ MY+K     +   +FDEM +R+V SWN  +SG+A  G  
Sbjct: 132 HGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQM 191

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
               +++ +F  M  + + +WTAMI+GY   G   EA+  F EMQL   IEP+++SL+SV
Sbjct: 192 K---KAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG-IEPDEISLISV 247

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           LP+C+ L  L  GK IH +A R+       +CNALI+MYSKCG +  A ++F      KD
Sbjct: 248 LPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQME-GKD 306

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            I+WS+++SGY  HG  H A+  +N+M     KP+ IT +G+LSAC   G+  EGL  ++
Sbjct: 307 VISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFD 366

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            +   Y+I+P  E   C++D+L RAG+L+RA++  KTMP++P   IWG+L+S+    GN 
Sbjct: 367 MMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNL 426

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           ++  +A   L++LEPE+  NYV L+N+YA   +W+ V+ LR M+++  +KK+PG S I +
Sbjct: 427 DVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEV 486

Query: 504 HGKTHCFSVADKAHPCSVSI 523
           +     F   D + P    I
Sbjct: 487 NNIVQEFVSGDNSKPFWTEI 506


>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
          Length = 545

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/506 (35%), Positives = 278/506 (54%), Gaps = 9/506 (1%)

Query: 24  QHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNSIQ 82
            H L    T R L+   + H+Q L+ G H +   +S K+  +YA  G+P  +  +F+ I 
Sbjct: 24  HHLLTQCKTIRELQ---RIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIP 80

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
           H D+  + SL++ ++K   H +A+ +FS+   S   PD F        SG + D  +G +
Sbjct: 81  HPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSV 140

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +HGL  + G   ++++ N+L+ MY +CGKF     +FD M  ++  +W   + G+     
Sbjct: 141 VHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVG 200

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V  +   F QM  ++  +WTA+I G+VQ+    +AL LF +M L+    PN +++V 
Sbjct: 201 ---VDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGH-RPNHITIVG 256

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL  C+ +  L  G+ IHG+  +     ++ + NAL+DMY+K GS+  A  VFE+    K
Sbjct: 257 VLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQM-K 315

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           DA TW++++S + + G G +AV L+  M+  G  P+ +T V VLSAC  +GLI EG E++
Sbjct: 316 DAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELF 375

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           + +   Y I P  E   C+VD+LGR G L+ A   I  M VEP   IW +L+SA + HGN
Sbjct: 376 DKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGN 435

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
             + ++A   +I+ EP +   YV L N+YA S RW    ++R  M  R + K PGCSWI 
Sbjct: 436 DRLAEIAGMEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIE 495

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLD 528
           + G  H F V DK H     IY  L+
Sbjct: 496 VDGVVHEFLVEDKTHDARREIYVTLE 521


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/558 (33%), Positives = 297/558 (53%), Gaps = 74/558 (13%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYLYNSLI 93
            +Q H+  L     ++PFVS++L+  Y+    P  + L     +F+ IQ + +  +N++I
Sbjct: 29  VEQLHAFSLKTAIFNHPFVSSRLLALYS---DPKINDLGYARSIFDRIQRRSLIHWNTII 85

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
             YV+N   ++ + LF  + +  + PD+FTL  + K    +  +  G  IHGL++KIGF 
Sbjct: 86  KCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 144

Query: 154 VDVILANSLMSMYVKCGK-------------------------FSEC------LNLFDEM 182
            DV +  SL++MY KCG+                         ++ C      L LF+EM
Sbjct: 145 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM 204

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P+R+  SW V + G +  G    V  +R++FDQM  RN+ +W AMINGY+++GD D AL 
Sbjct: 205 PERDAFSWTVLVDGLSKCGK---VESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALE 261

Query: 243 LFLEMQLKDRI------------------------------EPNKVSLVSVLPTCSSLIG 272
           LF +M + D +                               P+  +LVSVL   S L  
Sbjct: 262 LFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAV 321

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  G+ IH +  +     D  L  +LI+MY+KCG ++ A  VF      K    W++I+ 
Sbjct: 322 LGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQ-KKKVGHWTAIIV 380

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           G G+HG  + A+ L+ +M   G KP+ I  +GVL+AC  +GL+++G + ++ ++N Y+I+
Sbjct: 381 GLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIE 440

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           PT E   C+VD+L RAG L+ A + I+ MP+ P+  IW +L+  S  HG  ++ + A + 
Sbjct: 441 PTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQR 500

Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           +I++ PE    Y+ LSN+YA+S  W+ V+ +R MM  RG +K PGCS +   G  H F V
Sbjct: 501 VIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIV 560

Query: 513 ADKAHPCSVSIYEMLDDL 530
            D +HP +  IY  + ++
Sbjct: 561 GDISHPQTKEIYAKMSEM 578


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/512 (34%), Positives = 277/512 (54%), Gaps = 44/512 (8%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           +IT Y   G+  +++ +FN + +K +    N+++ GY KN   +EA  LF  M      P
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAM------P 54

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILANSLMSMYVKCGKFSECLNL 178
               ++  S L+G  ++   G +  GL         DV+  N ++  +V+ G  +     
Sbjct: 55  AKDLVSWNSMLTGYTRN---GEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEF 111

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F+++P  N  SW   + G A  G    +  +RR+FDQM  RNV AW AMI  YVQN  +D
Sbjct: 112 FEKIPNPNTVSWVTMLCGFARFGK---IAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVD 168

Query: 239 EALVLFLEM-----------------------------QLKDRIEPNKVSLVSVLPTCSS 269
           EA+ LF+EM                             Q+  R +P++ +    L +C+ 
Sbjct: 169 EAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAH 228

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  L  GKQ+H   ++     D+ + NALI MY+KCGS+  A  +F+D   + D ++W+S
Sbjct: 229 LAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDID-HFDVVSWNS 287

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           +++ Y L+G G EA+ L++KM   G  PD +T VG+LSAC   GLI++GL+++  ++  Y
Sbjct: 288 LIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAY 347

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I+P  E  AC+VD+LGRAG+L+ A   ++ M +  +  IWGAL+ A  +HGN E+   A
Sbjct: 348 NIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFA 407

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            + L++ EP   SNYV LSN+ A + RWD VA +R +MK++G +K PG SWI +  + H 
Sbjct: 408 AEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHA 467

Query: 510 FSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           F   D AHP +V +  +L  L   MR     P
Sbjct: 468 FLSEDPAHPRAVELCHILRSLTAHMRNTGDMP 499



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 127/292 (43%), Gaps = 45/292 (15%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           I N      +I AY       ++  +F  +  K+   + ++INGYV+    +EA +L + 
Sbjct: 148 IRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQ 207

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M Y N  PD  T A        +  L VG  +H L +K G+  D+ ++N+L++MY KCG 
Sbjct: 208 MPYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGS 266

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
            S    LF ++   +V SWN                                  ++I  Y
Sbjct: 267 ISSAELLFKDIDHFDVVSWN----------------------------------SLIAAY 292

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAIRK 286
             NG+  EAL LF +M+++  + P++V+ V +L  CS +  +  G +     +  + I  
Sbjct: 293 ALNGNGREALKLFHKMEVEG-VAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP 351

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
              H       ++D+  + G L+ A ++      N +A  W +++    +HG
Sbjct: 352 LAEHYA----CMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHG 399



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 5/241 (2%)

Query: 3   LSSARNTFALVTSRNYT-SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
           L  AR     +  RN    +T    L   A   +L++ KQ H  ++  G+ ++ FVS  L
Sbjct: 198 LDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNAL 257

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           IT YA CG  + ++L+F  I H DV  +NSLI  Y  N    EAL+LF  M    V+PD+
Sbjct: 258 ITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDE 317

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLF 179
            T   I      +  ++ G+ +    ++  + ++ +  +   ++ +  + G+  E   L 
Sbjct: 318 VTFVGILSACSHVGLIDQGLKLFKCMVQ-AYNIEPLAEHYACMVDLLGRAGRLEEAFQLV 376

Query: 180 DEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
             M    N G W   +      G+  L   +     + +      +  + N   + G  D
Sbjct: 377 RGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWD 436

Query: 239 E 239
           E
Sbjct: 437 E 437


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 183/568 (32%), Positives = 289/568 (50%), Gaps = 81/568 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           ++ + L    + +++  TK+ H   +  G   + FV   LI AYA CG    +  VFN +
Sbjct: 267 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 326

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS----------------------- 118
           + KDV  +N+++ GY ++     A ELF NM   N+                        
Sbjct: 327 EFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 386

Query: 119 ------------PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV----------DV 156
                       P+  T+ ++      +   + G  IH  S+K   +           D+
Sbjct: 387 NLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDL 446

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           ++ N+L+ MY KC  F    ++FD++P                                +
Sbjct: 447 MVYNALIDMYSKCRSFKAARSIFDDIP--------------------------------L 474

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSG 275
           + RNV  WT MI G+ Q GD ++AL LF+EM  +   + PN  ++  +L  C+ L  +  
Sbjct: 475 EERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 534

Query: 276 GKQIHGFAIRKELNHDVS--LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           GKQIH + +R       +  + N LIDMYSKCG +D AR VF DS   K AI+W+S+++G
Sbjct: 535 GKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVF-DSMSQKSAISWTSMMTG 593

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG+HG+G EA+ +++KM   G  PD IT + VL AC   G++++GL  ++S+   Y + P
Sbjct: 594 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 653

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             E  AC +D+L R+G+LD+A   +K MP+EP+  +W AL+SA  +H N E+ + A   L
Sbjct: 654 RAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 713

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           +++  EN  +Y  +SN+YA++ RW  VA +R +MK  G+KK PGCSW+     T  F V 
Sbjct: 714 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVG 773

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASP 541
           D++HP S  IY +L+ LI  ++     P
Sbjct: 774 DRSHPLSPQIYALLESLIDRIKAMGYVP 801



 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 145/481 (30%), Positives = 242/481 (50%), Gaps = 35/481 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ H L+      S +     H  I   G  SN F+   L+  Y+ CG   ++ ++F+ I
Sbjct: 157 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 216

Query: 82  QHK---DVYLYNSLINGYVKNHGHNEALELFSNMYY------SNVSPDDFTLATISKLSG 132
             +   DV  +NS+++ +VK+     AL+LFS M        +N   D  ++  I    G
Sbjct: 217 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 276

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +K +     +HG +I+ G   DV + N+L+  Y KCG     + +F+ M  ++V SWN 
Sbjct: 277 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 336

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRN----VYAWTAMINGYVQNGDLDEALVLFLEMQ 248
            ++G++ SG+F        +F  M++ N    V  WTA+I GY Q G   EAL LF +M 
Sbjct: 337 MVAGYSQSGNFEAAF---ELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMI 393

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL----------NHDVSLCNAL 298
               + PN V+++SVL  C+SL   S G +IH ++++  L          + D+ + NAL
Sbjct: 394 FSGSL-PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 452

Query: 299 IDMYSKCGSLDCARRVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC--LGS 355
           IDMYSKC S   AR +F+D     ++ +TW+ ++ G+  +G  ++A+ L+ +M+    G 
Sbjct: 453 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 512

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA-CVVDMLGRAGQLDRA 414
            P+  TI  +L AC     I  G +I+  V+  +R + +    A C++DM  + G +D A
Sbjct: 513 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 572

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
                +M  + + S W ++++   MHG  SE  D+  K  ++     P +   L  LYA 
Sbjct: 573 RHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDK--MRKAGFVPDDITFLVVLYAC 629

Query: 474 S 474
           S
Sbjct: 630 S 630



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 126/486 (25%), Positives = 205/486 (42%), Gaps = 96/486 (19%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHI---------------SNPFVS-----TKLITA 64
           HF  +    +S     Q H QI++ G +               S PF+S     T ++ +
Sbjct: 39  HFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVAS 98

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y  CG    + LV   +       +N LI  ++K    + A+ +   M  +   PD FTL
Sbjct: 99  YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTL 158

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
             + K  GE+     G   HGL    GF  +V + N+L++MY +CG   E   +FDE+ Q
Sbjct: 159 PHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQ 218

Query: 185 R---NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           R   +V SWN  +S H  S +                    AWTA+        DL   +
Sbjct: 219 RGIDDVISWNSIVSAHVKSSN--------------------AWTAL--------DLFSKM 250

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            L +  +  +    + +S+V++LP C SL  +   K++HG AIR     DV + NALID 
Sbjct: 251 TLIVHEKPTNE-RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDA 309

Query: 302 YSKCGSLDCARRVFEDSSFNK----------------------------------DAITW 327
           Y+KCG ++ A +VF    F                                    D +TW
Sbjct: 310 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTW 369

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +++++GY   G  HEA+ L+ +M+  GS P+ +TI+ VLSAC   G  ++G EI+   + 
Sbjct: 370 TAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK 429

Query: 388 TYRIKPTTE---------ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSAS 437
              +    +         +   ++DM  +      A      +P+E    + W  ++   
Sbjct: 430 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 489

Query: 438 VMHGNS 443
             +G+S
Sbjct: 490 AQYGDS 495


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 257/455 (56%), Gaps = 36/455 (7%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF  +  +D+  +N++I+G  +N  H +AL +   M  +++ PD FTL+++  +  E  +
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 251

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L  G  IHG +I+ G+  DV + +SL+ MY KC +  +   +F  +PQ +  S       
Sbjct: 252 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGIS------- 304

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                      W ++I G VQNG  DE L  F +M L  +I+PN
Sbjct: 305 ---------------------------WNSIIAGCVQNGMFDEGLKFFQQM-LIAKIKPN 336

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            VS  S++P C+ L  L  GKQ+HG+ IR   + +V + +AL+DMY+KCG++  AR +F+
Sbjct: 337 HVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFD 396

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
                 D ++W++++ GY LHG  ++A+ L+ +M   G KP+ +  + VL+AC  +GL++
Sbjct: 397 KMEL-YDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVD 455

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           E  + +NS+   YRI P  E  A V D+LGR G+L+ A +FI  M +EP+ S+W  L++A
Sbjct: 456 EAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAA 515

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N E+ +   K L  ++P+N   YV LSN+Y+++ RW    +LR  M+D+G+KK P
Sbjct: 516 CRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKP 575

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
            CSWI I  K H F   DK+HP    I E L  L+
Sbjct: 576 ACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLL 610



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 224/455 (49%), Gaps = 19/455 (4%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           N T    +  LQ  ++ +S    KQ H+QIL    + +P + + +++ Y+       S L
Sbjct: 2   NTTQNLCKTLLQNPSSVKSKSQAKQLHAQILRTS-LPSPSLLSTILSIYSNLNLLHDSLL 60

Query: 77  VFNSIQHKDVYL-YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
           +FNS+      L + S+I  Y  +     +L  F  M  S   PD     ++ K    +K
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC---LNLFDEMPQRNVGSWNV 192
           DL  G  +HG  I++G   D+   N+LM+MY K     E      +FDE    +V S   
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
           + S +  S         R+VF+ M +R++ +W  +I+G  QNG  ++AL++  EM   D 
Sbjct: 181 KESYYLGS--------LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNAD- 231

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           + P+  +L SVLP  +  + L  GK+IHG+AIR   + DV + ++LIDMY+KC  +D + 
Sbjct: 232 LRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSC 291

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           RVF       D I+W+SI++G   +G   E +  + +M+    KP+ ++   ++ AC   
Sbjct: 292 RVFYMLP-QHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHL 350

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
             ++ G +++  +I + R      I + +VDM  + G +  A      M +    S W A
Sbjct: 351 TTLHLGKQLHGYIIRS-RFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVS-WTA 408

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           ++    +HG++      +K + ++E   P NYV+ 
Sbjct: 409 MIMGYALHGHAYDAISLFKRM-EVEGVKP-NYVAF 441



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 140/320 (43%), Gaps = 38/320 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L + A + +L   K+ H   +  G+ ++ F+ + LI  YA C +   S  VF 
Sbjct: 236 SFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFY 295

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +   D   +NS+I G V+N   +E L+ F  M  + + P+  + ++I      +  L++
Sbjct: 296 MLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHL 355

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG  I+  F  +V +A++L+ MY KCG       +FD+M   ++ SW         
Sbjct: 356 GKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSW--------- 406

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                    TAMI GY  +G   +A+ LF  M+++  ++PN V+
Sbjct: 407 -------------------------TAMIMGYALHGHAYDAISLFKRMEVEG-VKPNYVA 440

Query: 260 LVSVLPTCSSLIGL--SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            ++VL  CS   GL     K  +       +   +    A+ D+  + G L+ A     D
Sbjct: 441 FMAVLTACSH-AGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISD 499

Query: 318 SSFNKDAITWSSIVSGYGLH 337
                    WS++++   +H
Sbjct: 500 MHIEPTGSVWSTLLAACRVH 519


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/481 (36%), Positives = 277/481 (57%), Gaps = 21/481 (4%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP- 119
           L+  Y    Q  ++Q +FN +  +DV  +N++++GY +     EA  LF      +V+P 
Sbjct: 268 LMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF------DVAPI 321

Query: 120 -DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSECLN 177
            D FT   I  +SG  ++   GML     +       + +  N++M+ YV+     E   
Sbjct: 322 RDVFTWTAI--VSGYAQN---GMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKE 376

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           LFD MP RNV SWN  ++G+A +G   ++  +R +F  M +++  +W AM+  Y Q G  
Sbjct: 377 LFDAMPCRNVASWNTMLTGYAQAG---MLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFS 433

Query: 238 DEALVLFLEM-QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
           +E L LF EM +  + +  N+ +   VL TC+ +  L  G Q+H   I+        + N
Sbjct: 434 EETLQLFKEMGRCGEWV--NRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGN 491

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           AL+ MY KCGS++ A   FE+    +D ++W+++++GY  HG G EA+ +++ M    +K
Sbjct: 492 ALLAMYFKCGSMEEAHSAFEEME-ERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTK 550

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD IT+VGVL+AC  SGL+ +G+  + S+   + +    E   C++D+LGRAG+LD A++
Sbjct: 551 PDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVN 610

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
            +K MP EP  ++WGAL+ AS +H NSE+   A + + +LEPEN   YV LSN+YASS +
Sbjct: 611 LMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGK 670

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRG 536
           W  V ++R +M +RG+KK PG SWI +  K H FSV D  HP    IY  L+DL + M+ 
Sbjct: 671 WRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKK 730

Query: 537 A 537
           A
Sbjct: 731 A 731



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 164/354 (46%), Gaps = 42/354 (11%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM-------- 112
           ++  YA  G+  Q+   F SI   D + YN+L++    +    +   LF  M        
Sbjct: 144 MLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSY 203

Query: 113 -----------------YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
                            +Y +++P+   ++    L+  +++  +         +  +  D
Sbjct: 204 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEW--D 261

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
            I  N+LM+ YV+  +  E   +F++MPQR+V SWN  +SG+A  GD   +  +RR+FD 
Sbjct: 262 AISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGD---MAEARRLFDV 318

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
              R+V+ WTA+++GY QNG L+EA  +F  M  K     N VS  +++        +  
Sbjct: 319 APIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDK-----NAVSWNAMMAAYVQRRMMEE 373

Query: 276 GKQI-HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            K++      R     +V+  N ++  Y++ G LD AR +F      KDA++W+++++ Y
Sbjct: 374 AKELFDAMPCR-----NVASWNTMLTGYAQAGMLDEARAIF-GMMPQKDAVSWAAMLAAY 427

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
              G   E + L+ +M   G   +      VLS C     +  G+++++ +I  
Sbjct: 428 SQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKA 481



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 156/339 (46%), Gaps = 30/339 (8%)

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
           ++VI  N  ++ +++ G+  +   LF  MP+R+  ++N  ++G+A++G     +     F
Sbjct: 105 MEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQAL---SFF 161

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
             + R + +++  +++    +  L +   LF EM +KD +  N      V+ +  +  GL
Sbjct: 162 RSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYN------VMISSHANHGL 215

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
               + H F +  E   D    N ++  Y + G +  AR +F DS    DAI+W+++++G
Sbjct: 216 VSLAR-HYFDLAPE--KDAVSWNGMLAAYVRNGRIQEARELF-DSRTEWDAISWNALMAG 271

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y    +  EA  ++NKM     + D+++   ++S   R G + E   +++       + P
Sbjct: 272 YVQRSQIEEAQKMFNKM----PQRDVVSWNTMVSGYARRGDMAEARRLFD-------VAP 320

Query: 394 TTEI--CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
             ++     +V    + G L+ A      MP + + S W A+++A V      M + A +
Sbjct: 321 IRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVS-WNAMMAAYV---QRRMMEEAKE 376

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
               +   N +++ ++   YA +   D    +  MM  +
Sbjct: 377 LFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQK 415



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 11/155 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+   Q HS+++  G+    FV   L+  Y  CG   ++   F  ++ +DV  +N++I 
Sbjct: 467 ALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIA 526

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY ++    EALE+F  M  ++  PDD TL  +          + G++  G+S       
Sbjct: 527 GYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACS-----HSGLVEKGISYFYSMHR 581

Query: 155 DVILANS------LMSMYVKCGKFSECLNLFDEMP 183
           D  +A        ++ +  + G+  E +NL  +MP
Sbjct: 582 DFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMP 616


>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/501 (34%), Positives = 286/501 (57%), Gaps = 19/501 (3%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYLYNSLIN 94
           KQ+H+Q+ + G  +N F  ++L+   A C  P Q  L     VF  I H  + + N++I 
Sbjct: 22  KQAHAQVFTTGLDTNTFALSRLL---AFCSHPYQGSLTYACRVFERIHHPTLCICNTIIK 78

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            ++ N        +F+ M ++ + PD++T+  + K    ++D ++G ++HG S K+G V 
Sbjct: 79  TFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVF 138

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+ + NSLM+MY  CG      ++FDEMP+ +  SW+V ISG+A  GD   V  +R  FD
Sbjct: 139 DIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGD---VDSARLFFD 195

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +   ++   W AMI+GYVQN    E L LF  +QL   + P++   VS+L  C+ L  L 
Sbjct: 196 EAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLT-HVVPDESIFVSILSACAHLGALD 254

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G  IH +  RK ++  + L  +L+DMY+KCG+L+ A+R+F DS   +D + W++++SG 
Sbjct: 255 IGIWIHRYLNRKTVSLSIRLSTSLLDMYAKCGNLELAKRLF-DSMPERDIVCWNAMISGL 313

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            +HG G  A+ ++++M   G KPD IT + V +AC  SG+ +EGL++ + + + Y I+P 
Sbjct: 314 AMHGDGASALKMFSEMEKTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPK 373

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPV-----EPSPSIWGALVSASVMHGNSEMQDLA 449
           +E   C+VD+L RAG    A+  I+ +             W A +SA   HG +++ + A
Sbjct: 374 SEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERA 433

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            K L++LE  +   YV LSNLYA+S +      +R MM+++G+ K+PGCS + I G    
Sbjct: 434 AKRLLRLE-NHSGVYVLLSNLYAASGKHSDARRVRNMMRNKGVDKAPGCSSVEIDGVVSE 492

Query: 510 FSVADKAHPCSVSIYEMLDDL 530
           F   ++ HP    I+ +L+ L
Sbjct: 493 FIAGEETHPQMEEIHSVLEIL 513



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 146/360 (40%), Gaps = 74/360 (20%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT--------- 72
           T+ + L+  A  R   L K  H     LG + + FV   L+  Y++CG            
Sbjct: 107 TIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHVFDEM 166

Query: 73  ----------------------QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
                                  ++L F+    KD  ++ ++I+GYV+N    E L LF 
Sbjct: 167 PRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFR 226

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            +  ++V PD+    +I      +  L++G+ IH    +    + + L+ SL+ MY KCG
Sbjct: 227 LLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAKCG 286

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
                  LFD MP+R++  WN  ISG A                                
Sbjct: 287 NLELAKRLFDSMPERDIVCWNAMISGLA-------------------------------- 314

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS-SLIGLSGGKQIHGFAIRKELN 289
              +GD   AL +F EM+ K  I+P+ ++ ++V   CS S +   G + +   +   E+ 
Sbjct: 315 --MHGDGASALKMFSEME-KTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIE 371

Query: 290 HDVSLCNALIDMYSKCGSLDCA----RRVFEDSSFN--KDAITWSSIVSGYGLHGKGHEA 343
                   L+D+ S+ G    A    RR+   +S+N  ++ + W + +S    HG+   A
Sbjct: 372 PKSEHYGCLVDLLSRAGLFGEAMVMIRRI-TSTSWNGSEETLAWRAFLSACCNHGQAQLA 430


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/588 (32%), Positives = 291/588 (49%), Gaps = 74/588 (12%)

Query: 26  FLQVSATHRSLK-----LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           F+ V    R LK       KQ H  I+      N  V   L+  Y  CG+  +++ VF++
Sbjct: 29  FMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDA 88

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +  K    +N++I GYV++    +A+ LF  M +  V P+  T   I K    +  L  G
Sbjct: 89  LVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWG 148

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV-------- 192
             +H      G   DV +  +L+ MY KCG  +E   +FD +   ++ SW V        
Sbjct: 149 KEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQS 208

Query: 193 ------------------------------------------RISGHASSGDFSLVVR-- 208
                                                     R+  HA      L VR  
Sbjct: 209 GNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVG 268

Query: 209 ---------------SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                          +R VFD+MK R+V +W  MI  + ++G   EA  LFL+MQ +   
Sbjct: 269 TALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEG-C 327

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           +P+ +  +S+L  C+S   L   K+IH  A+   L  DV +  AL+ MYSK GS+D AR 
Sbjct: 328 KPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARV 387

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VF D    ++ ++W++++SG   HG G +A+ ++ +M   G KPD +T V VLSAC  +G
Sbjct: 388 VF-DRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAG 446

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
           L++EG   Y ++   Y I+P    C C+VD+LGRAG+L  A  FI  M V+P  + WGAL
Sbjct: 447 LVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGAL 506

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           + +   +GN E+ +L  K  ++L+P+N + YV LSN+YA + +WD V+ +RTMM++RG++
Sbjct: 507 LGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIR 566

Query: 494 KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           K PG SWI +  K H F VAD +HP    I E  D +I  ++     P
Sbjct: 567 KEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIP 614



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 179/395 (45%), Gaps = 45/395 (11%)

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           +EA+ +  N     +  D F    + K   + KDL     +H   IK     +  + N+L
Sbjct: 10  SEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNL 69

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + +Y++CG+  E   +FD + +++  SWN                               
Sbjct: 70  LHVYIECGRLQEARCVFDALVKKSGASWN------------------------------- 98

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
              AMI GYV++   ++A+ LF EM   + ++PN  + + +L  C+SL  L  GK++H  
Sbjct: 99  ---AMIAGYVEHKHAEDAMRLFREM-CHEGVQPNAGTYMIILKACASLSALKWGKEVHAC 154

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
                L  DV +  AL+ MY KCGS++ ARR+F D+  N D I+W+ ++  Y   G G E
Sbjct: 155 IRHGGLESDVRVGTALLRMYGKCGSINEARRIF-DNLMNHDIISWTVMIGAYAQSGNGKE 213

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A  L  +M   G KP+ IT V +L+AC   G +     ++   ++   ++    +   +V
Sbjct: 214 AYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDA-GLELDVRVGTALV 272

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE--- 459
            M  ++G +D A      M V    S W  ++ A   HG       AY   +Q++ E   
Sbjct: 273 QMYAKSGSIDDARVVFDRMKVRDVVS-WNVMIGAFAEHGRGHE---AYDLFLQMQTEGCK 328

Query: 460 -NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
            +   ++S+ N  AS+   + V ++     D GL+
Sbjct: 329 PDAIMFLSILNACASAGALEWVKKIHRHALDSGLE 363



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 12/268 (4%)

Query: 231 YVQNGD-LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           +VQ  + L EA+V+ +  +L+  +  +    V VL  C     L   KQ+H   I+  + 
Sbjct: 2   HVQTANTLSEAIVVLMN-RLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRME 60

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            +  + N L+ +Y +CG L  AR VF D+   K   +W+++++GY  H    +A+ L+ +
Sbjct: 61  QNAHVMNNLLHVYIECGRLQEARCVF-DALVKKSGASWNAMIAGYVEHKHAEDAMRLFRE 119

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M   G +P+  T + +L AC     +  G E++ + I    ++    +   ++ M G+ G
Sbjct: 120 MCHEGVQPNAGTYMIILKACASLSALKWGKEVH-ACIRHGGLESDVRVGTALLRMYGKCG 178

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE----NPSNYV 465
            ++ A      +      S W  ++ A    GN +    AY+ ++Q+E E    N   YV
Sbjct: 179 SINEARRIFDNLMNHDIIS-WTVMIGAYAQSGNGKE---AYRLMLQMEQEGFKPNAITYV 234

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLK 493
           S+ N  AS      V  +     D GL+
Sbjct: 235 SILNACASEGALKWVKRVHRHALDAGLE 262


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 183/568 (32%), Positives = 289/568 (50%), Gaps = 81/568 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           ++ + L    + +++  TK+ H   +  G   + FV   LI AYA CG    +  VFN +
Sbjct: 274 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMM 333

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS----------------------- 118
           + KDV  +N+++ GY ++     A ELF NM   N+                        
Sbjct: 334 EFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 393

Query: 119 ------------PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV----------DV 156
                       P+  T+ ++      +   + G  IH  S+K   +           D+
Sbjct: 394 NLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDL 453

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           ++ N+L+ MY KC  F    ++FD++P                                +
Sbjct: 454 MVYNALIDMYSKCRSFKAARSIFDDIP--------------------------------L 481

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSG 275
           + RNV  WT MI G+ Q GD ++AL LF+EM  +   + PN  ++  +L  C+ L  +  
Sbjct: 482 EERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 541

Query: 276 GKQIHGFAIRKELNHDVS--LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           GKQIH + +R       +  + N LIDMYSKCG +D AR VF DS   K AI+W+S+++G
Sbjct: 542 GKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVF-DSMSQKSAISWTSMMTG 600

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG+HG+G EA+ +++KM   G  PD IT + VL AC   G++++GL  ++S+   Y + P
Sbjct: 601 YGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTP 660

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             E  AC +D+L R+G+LD+A   +K MP+EP+  +W AL+SA  +H N E+ + A   L
Sbjct: 661 RAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 720

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           +++  EN  +Y  +SN+YA++ RW  VA +R +MK  G+KK PGCSW+     T  F V 
Sbjct: 721 VEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVG 780

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASP 541
           D++HP S  IY +L+ LI  ++     P
Sbjct: 781 DRSHPLSPQIYALLESLIDRIKAMGYVP 808



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 145/481 (30%), Positives = 242/481 (50%), Gaps = 35/481 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ H L+      S +     H  I   G  SN F+   L+  Y+ CG   ++ ++F+ I
Sbjct: 164 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 223

Query: 82  QHK---DVYLYNSLINGYVKNHGHNEALELFSNMYY------SNVSPDDFTLATISKLSG 132
             +   DV  +NS+++ +VK+     AL+LFS M        +N   D  ++  I    G
Sbjct: 224 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 283

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +K +     +HG +I+ G   DV + N+L+  Y KCG     + +F+ M  ++V SWN 
Sbjct: 284 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 343

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRN----VYAWTAMINGYVQNGDLDEALVLFLEMQ 248
            ++G++ SG+F        +F  M++ N    V  WTA+I GY Q G   EAL LF +M 
Sbjct: 344 MVAGYSQSGNFEAAF---ELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMI 400

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL----------NHDVSLCNAL 298
               + PN V+++SVL  C+SL   S G +IH ++++  L          + D+ + NAL
Sbjct: 401 FSGSL-PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 459

Query: 299 IDMYSKCGSLDCARRVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC--LGS 355
           IDMYSKC S   AR +F+D     ++ +TW+ ++ G+  +G  ++A+ L+ +M+    G 
Sbjct: 460 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 519

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA-CVVDMLGRAGQLDRA 414
            P+  TI  +L AC     I  G +I+  V+  +R + +    A C++DM  + G +D A
Sbjct: 520 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 579

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
                +M  + + S W ++++   MHG  SE  D+  K  ++     P +   L  LYA 
Sbjct: 580 RHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDK--MRKAGFVPDDITFLVVLYAC 636

Query: 474 S 474
           S
Sbjct: 637 S 637



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/486 (25%), Positives = 205/486 (42%), Gaps = 96/486 (19%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHI---------------SNPFVS-----TKLITA 64
           HF  +    +S     Q H QI++ G +               S PF+S     T ++ +
Sbjct: 46  HFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVAS 105

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y  CG    + LV   +       +N LI  ++K    + A+ +   M  +   PD FTL
Sbjct: 106 YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTL 165

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
             + K  GE+     G   HGL    GF  +V + N+L++MY +CG   E   +FDE+ Q
Sbjct: 166 PHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQ 225

Query: 185 R---NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           R   +V SWN  +S H  S +                    AWTA+        DL   +
Sbjct: 226 RGIDDVISWNSIVSAHVKSSN--------------------AWTAL--------DLFSKM 257

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            L +  +  +    + +S+V++LP C SL  +   K++HG AIR     DV + NALID 
Sbjct: 258 TLIVHEKPTNE-RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDA 316

Query: 302 YSKCGSLDCARRVFEDSSFNK----------------------------------DAITW 327
           Y+KCG ++ A +VF    F                                    D +TW
Sbjct: 317 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTW 376

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +++++GY   G  HEA+ L+ +M+  GS P+ +TI+ VLSAC   G  ++G EI+   + 
Sbjct: 377 TAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK 436

Query: 388 TYRIKPTTE---------ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSAS 437
              +    +         +   ++DM  +      A      +P+E    + W  ++   
Sbjct: 437 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 496

Query: 438 VMHGNS 443
             +G+S
Sbjct: 497 AQYGDS 502


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 298/560 (53%), Gaps = 80/560 (14%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+ +L   +  N FV+  LI  YA  G+  ++  +F ++   D   +NS+++G+V+N  +
Sbjct: 341 HATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLY 400

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV--GMLIHGLSIKIGFVVDVILAN 160
           +EAL+ +  M  +   PD   +A IS ++   +  N   GM IH  ++K G   D+ + N
Sbjct: 401 HEALQFYHEMRDAGQKPD--LVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGN 458

Query: 161 SLMSMYVK-CG-KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
           SL+ MY K C  K+ +C+  FD+MP ++V SW   I+GHA +G  S   R+  +F +++ 
Sbjct: 459 SLVDMYAKFCSMKYMDCI--FDKMPDKDVVSWTTIIAGHAQNGSHS---RALELFREVQL 513

Query: 219 RNVYAWTAMI----------------------------------NG----YVQNGDLDEA 240
             +     MI                                  NG    Y + G++D A
Sbjct: 514 EGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYA 573

Query: 241 LVLFLEMQLKD------------------------------RIEPNKVSLVSVLPTCSSL 270
             +F  ++ KD                               +EP+ +SLVS+L   +SL
Sbjct: 574 ARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASL 633

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  GK+IHGF IRK    + SL + L+DMY++CG+L+ +R VF +   NKD + W+S+
Sbjct: 634 SALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF-NFIRNKDLVLWTSM 692

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++ YG+HG G  A+ L+ +M      PD I  V VL AC  SGL+NEG     S+   Y+
Sbjct: 693 INAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQ 752

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           ++P  E   C+VD+LGRA  L+ A  F+K M VEP+  +W AL+ A  +H N E+ ++A 
Sbjct: 753 LEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAA 812

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + L++++PENP NYV +SN+YA+ RRW  V E+R  MK  GLKK+PGCSWI +  K H F
Sbjct: 813 QKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTF 872

Query: 511 SVADKAHPCSVSIYEMLDDL 530
              DK+HP S  IY  L  +
Sbjct: 873 MARDKSHPQSYEIYSKLSQI 892



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 211/433 (48%), Gaps = 41/433 (9%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNP-FVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           L++  + ++L   +Q H+ +++   + N  F+ST+L+  Y  CG    ++ +F+ + HK 
Sbjct: 121 LELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKT 180

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           ++ +N++I  YV N     +LEL+  M  S +  D  T   I K  G +KD   G  +HG
Sbjct: 181 IFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHG 240

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFS 204
           L+IK G+V  V +ANS++ MY KC   +    LFD MP++ +V SWN  IS ++S     
Sbjct: 241 LAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS----- 295

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
                                        NG   EAL LF EMQ K  + PN  + V+ L
Sbjct: 296 -----------------------------NGQSIEALRLFGEMQ-KASLAPNTYTFVAAL 325

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             C     +  G  IH   ++     +V + NALI MY++ G +  A  +F +   + D 
Sbjct: 326 QACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD-DWDT 384

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           I+W+S++SG+  +G  HEA+  Y++M   G KPD++ ++ +++A  RSG    G++I+  
Sbjct: 385 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAY 444

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            +    +    ++   +VDM  +   +         MP +   S W  +++    +G S 
Sbjct: 445 AMKN-GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS-WTTIIAGHAQNG-SH 501

Query: 445 MQDLAYKSLIQLE 457
            + L     +QLE
Sbjct: 502 SRALELFREVQLE 514



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 225/472 (47%), Gaps = 79/472 (16%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKN 99
           + H   +  G++S  FV+  ++  Y  C     ++ +F+ +  K DV  +NS+I+ Y  N
Sbjct: 237 EVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSN 296

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               EAL LF  M  ++++P+ +T     +   +   +  GM IH   +K  + ++V +A
Sbjct: 297 GQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVA 356

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF---------------- 203
           N+L++MY + GK  E  N+F  M   +  SWN  +SG   +G +                
Sbjct: 357 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 416

Query: 204 -------SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV-------------- 242
                  S++  S R  + +    ++A+ AM NG   +  +  +LV              
Sbjct: 417 PDLVAVISIIAASARSGNTLNGMQIHAY-AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDC 475

Query: 243 LFLEMQLKD------------------------------RIEPNKVSLVSVLPTCSSLIG 272
           +F +M  KD                               I+ + + + S+L  CS L  
Sbjct: 476 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKL 535

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           +S  K+IH + IRK L+ D+ L N ++D+Y +CG++D A R+FE   F KD ++W+S++S
Sbjct: 536 ISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEF-KDVVSWTSMIS 593

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
            Y  +G  +EA+ L++ M   G +PD I++V +LSA      + +G EI+  +I    + 
Sbjct: 594 CYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVL 653

Query: 393 PTTEICACVVDMLGRAGQLDRA---LDFIKTMPVEPSPSIWGALVSASVMHG 441
             + + + +VDM  R G L+++    +FI+   +     +W ++++A  MHG
Sbjct: 654 EGS-LASTLVDMYARCGTLEKSRNVFNFIRNKDL----VLWTSMINAYGMHG 700



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 18/228 (7%)

Query: 255 PNKVSL----VSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLD 309
           P++ SL     SVL  C S   LS G+Q+H   I    L + V L   L+ MY KCG L 
Sbjct: 108 PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 167

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            A ++F D   +K   TW++++  Y  +G+   ++ LY +M   G   D  T   +L AC
Sbjct: 168 DAEKLF-DGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC 226

Query: 370 G-----RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
           G     R G    GL I    ++   +  +      +V M  +   L+ A      MP +
Sbjct: 227 GLLKDRRCGAEVHGLAIKEGYVSIVFVANS------IVGMYTKCNDLNGARQLFDRMPEK 280

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
                W +++SA   +G S ++ L     +Q     P+ Y  ++ L A
Sbjct: 281 EDVVSWNSMISAYSSNGQS-IEALRLFGEMQKASLAPNTYTFVAALQA 327



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           K  K+ H  ++  G +    +++ L+  YA CG   +S+ VFN I++KD+ L+ S+IN Y
Sbjct: 637 KKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAY 696

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
             +     A++LF  M   +++PD      +
Sbjct: 697 GMHGCGRAAIDLFRRMEDESIAPDHIAFVAV 727


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/499 (35%), Positives = 276/499 (55%), Gaps = 6/499 (1%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L K+    +L  G  S+ FV   LIT Y+ C +   ++++F+ +  +D+  +NS+I GY 
Sbjct: 157 LAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYS 216

Query: 98  KNHGHNEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           +   + +  EL+  M  S  + P+  T+ ++ +   +  DL  GM +H   I+    +DV
Sbjct: 217 QGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDV 276

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
              NSL+ +Y KCG       LF+EM  ++  ++   +SG+ + G    V ++  +F +M
Sbjct: 277 SAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHG---FVDKAMDLFREM 333

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           K   +  W A+I+G VQN   +  L L  EMQ +    PN V+L S+LPT S    L GG
Sbjct: 334 KNPRLSTWNAVISGLVQNNCNEGILELVQEMQ-EFGFRPNAVTLSSILPTFSCFSNLKGG 392

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K IH +AIR    H++ +  ++ID Y+K G L  A+ VF D S ++  I W++I+S Y  
Sbjct: 393 KAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVF-DQSKDRSLIVWTAIISAYSA 451

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG  + A+ L+  M+  G++PD +T   VL+AC  SG++NE  +I++ +   Y  +P  E
Sbjct: 452 HGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPCVE 511

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             AC+V +L RAG L  A +FI  MP+EP+  +WGAL++   + G+ E+       L  +
Sbjct: 512 HYACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVELGKFVCDHLFNM 571

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           EPEN  NYV ++NLY+ + RW+    +R  MK  GLKK PG SWI   G    F   D +
Sbjct: 572 EPENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIETSGGLRSFIARDVS 631

Query: 517 HPCSVSIYEMLDDLILIMR 535
              S  IY ML+ L+ +MR
Sbjct: 632 SERSEEIYGMLEGLLGLMR 650



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 206/454 (45%), Gaps = 74/454 (16%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            +Q  + HR L+  KQ H++I+      + F+++KLIT Y+      ++  VF+ I  K+
Sbjct: 40  LIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKILDKN 99

Query: 86  VYLYNSLINGYVKNHGH---NEALELFSNMYYSNVSPDDFTLATISK-LSGEIKDLNVGM 141
           ++ +N+++ GY  ++ H      L      Y   + PD+FT+  + K LS    D  +  
Sbjct: 100 IFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSILAK 159

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +    ++ GF  D+ + N+L++ Y +C ++     LFD M  R++ SWN          
Sbjct: 160 EVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWN---------- 209

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   +MI GY Q G  ++   L+ +M     + PN V++V
Sbjct: 210 ------------------------SMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVV 245

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVL  C+    L  G ++H F I +++  DVS  N+LI +Y+KCGSLD AR +F + S N
Sbjct: 246 SVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMS-N 304

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMV------------------C----------- 352
           KD +T+ SIVSGY  HG   +A+ L+ +M                   C           
Sbjct: 305 KDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEM 364

Query: 353 --LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRIKPTTEICACVVDMLGRAG 409
              G +P+ +T+  +L        +  G  I+   I N Y       +   ++D   + G
Sbjct: 365 QEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGY--AHNIYVATSIIDAYAKLG 422

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            L R   ++     + S  +W A++SA   HG++
Sbjct: 423 FL-RGAQWVFDQSKDRSLIVWTAIISAYSAHGDA 455



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 155/376 (41%), Gaps = 51/376 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   LQ  A    L    + H  I+      +      LI  YA CG    ++ +FN +
Sbjct: 243 TVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEM 302

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS----------------------- 118
            +KD   Y S+++GY+ +   ++A++LF  M    +S                       
Sbjct: 303 SNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQ 362

Query: 119 --------PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
                   P+  TL++I        +L  G  IH  +I+ G+  ++ +A S++  Y K G
Sbjct: 363 EMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLG 422

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM----KRRNVYAWTA 226
                  +FD+   R++  W   IS +++ GD +  +   R+F  M     + +   +TA
Sbjct: 423 FLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAAL---RLFGDMLSNGTQPDPVTFTA 479

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEP---NKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           ++     +G ++EA  +F EM LK   +P   +   +V VL     L       +   F 
Sbjct: 480 VLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGML------SEAAEFI 533

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN---KDAITWSSIVSGYGLHGKG 340
            +  +  +  +  AL++  S  G ++  + V  D  FN   ++   +  + + Y   G+ 
Sbjct: 534 CKMPIEPNAKVWGALLNGVSVSGDVELGKFVC-DHLFNMEPENTGNYVIMANLYSQAGRW 592

Query: 341 HEAVLLYNKMVCLGSK 356
            EA  +  KM  +G K
Sbjct: 593 EEAENIREKMKKIGLK 608



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 8/226 (3%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L   +   +LK  K  H+  +  G+  N +V+T +I AYA  G    +Q VF+
Sbjct: 373 AVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFD 432

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
             + + + ++ ++I+ Y  +   N AL LF +M  +   PD  T   +         +N 
Sbjct: 433 QSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNE 492

Query: 140 GMLIHG-LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGH 197
              I   + +K GF   V     ++ +  + G  SE      +MP + N   W   ++G 
Sbjct: 493 AWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGV 552

Query: 198 ASSGDFSLVVRSRRVFDQ---MKRRNVYAWTAMINGYVQNGDLDEA 240
           + SGD  L    + V D    M+  N   +  M N Y Q G  +EA
Sbjct: 553 SVSGDVEL---GKFVCDHLFNMEPENTGNYVIMANLYSQAGRWEEA 595


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 272/502 (54%), Gaps = 35/502 (6%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H   +  G  S+ F    L   YA CG    ++ VF  I+  D+  +N++I G+   
Sbjct: 321 RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASV 380

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               E+   FS M ++ + P+D T+ ++     E   LN G+ +H   +K+GF +D+ + 
Sbjct: 381 SNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVC 440

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           NSL+SMY KC   ++ L +F+++  +                                  
Sbjct: 441 NSLLSMYSKCSNLNDALQVFEDIGNK---------------------------------A 467

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           ++ +W  ++   +Q     E L L  ++    RI+P+ V+L +VL +   +     G QI
Sbjct: 468 DIVSWNTLLTACLQQNQAGEVLRL-TKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQI 526

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H F ++  LN D+S+ NALI+MY+KCGSL+CAR++F DS  N D I+WSS++ GY   G 
Sbjct: 527 HCFIMKSGLNLDISVSNALINMYTKCGSLECARKMF-DSIGNPDIISWSSLIVGYAQAGC 585

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           G EA  L+  M  LG KP+ IT VG+L+AC   G++ EGL++Y ++   YRI PT E C+
Sbjct: 586 GKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCS 645

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VD+L RAG LD A DFI+ MP  P   +W  L++A  +HGN E+   A +++++++P 
Sbjct: 646 CMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENVLKIDPS 705

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           N +  V L N++ASS  W   A LR+ M+   + K PG SWI I  K H F   D  HP 
Sbjct: 706 NSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPE 765

Query: 520 SVSIYEMLDDLILIMRGAAASP 541
              IY ML++L+L +   +  P
Sbjct: 766 RGKIYTMLEELMLQILDDSCDP 787



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 218/473 (46%), Gaps = 46/473 (9%)

Query: 6   ARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           A + F   +S    S T  H +   ++ RSL+  ++ H  +L+  +  +  +   +++ Y
Sbjct: 84  AFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMY 143

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125
             CG   +++ +F+S+  K+V  + S+I+GY +    + A+ L+  M  S   PD FT  
Sbjct: 144 GKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFG 203

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           +I K    + D  +   +H   +K  F  D+I  N+L+SMY K  + ++ +N+F  +  +
Sbjct: 204 SIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIK 263

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
           ++ SW                                   +MI G+ Q G   EAL  F 
Sbjct: 264 DLISWG----------------------------------SMIAGFSQLGYELEALCHFR 289

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
           EM  +   +PN+    S    CS L+    G+QIHG  I+  L  D+    +L DMY+KC
Sbjct: 290 EMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKC 349

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           G L+ AR VF       D + W++I++G+       E+   +++M   G  P+ +T++ +
Sbjct: 350 GFLESARTVFYHIE-KPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSL 408

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L AC    ++N G+++++ ++          +C  ++ M  +   L+ AL   + +  + 
Sbjct: 409 LCACSEPVMLNHGIQVHSYIVKM-GFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKA 467

Query: 426 SPSIWGALVSASVMHGNS----EMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
               W  L++A +    +     +  L + S I+       ++V+L+N+  SS
Sbjct: 468 DIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIK------PDHVTLTNVLVSS 514



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 182/400 (45%), Gaps = 38/400 (9%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
            KL +Q H+ +L     ++      LI+ Y    Q   +  VF+ I  KD+  + S+I G
Sbjct: 215 FKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAG 274

Query: 96  YVKNHGHNEALELFSNMYYSNV-SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           + +     EAL  F  M   +V  P++F   +      ++ + + G  IHGL IK G   
Sbjct: 275 FSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGS 334

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+    SL  MY KCG                                   +  +R VF 
Sbjct: 335 DLFAGCSLCDMYAKCG----------------------------------FLESARTVFY 360

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            +++ ++ AW A+I G+    +  E+   F +M+    + PN V+++S+L  CS  + L+
Sbjct: 361 HIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLV-PNDVTVLSLLCACSEPVMLN 419

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G Q+H + ++   N D+ +CN+L+ MYSKC +L+ A +VFED     D ++W+++++  
Sbjct: 420 HGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTAC 479

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
               +  E + L   M     KPD +T+  VL + G+      G +I+  ++ +  +   
Sbjct: 480 LQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKS-GLNLD 538

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
             +   +++M  + G L+ A     ++   P    W +L+
Sbjct: 539 ISVSNALINMYTKCGSLECARKMFDSIG-NPDIISWSSLI 577



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 132/277 (47%), Gaps = 17/277 (6%)

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           EAL  F   Q         V+   ++  CSSL  L  G++IH   +      D+ L N +
Sbjct: 80  EALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHI 139

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           + MY KCGSL  AR +F DS   K+ ++W+S++SGY  +G+   A+ LY +M+  G  PD
Sbjct: 140 LSMYGKCGSLKEARNMF-DSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198

Query: 359 IITIVGVLSACGRSGLINEGL--EIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRA 414
             T   ++ +C  SGL +  L  +++  V+ +   +   ++ A   ++ M  +  Q+  A
Sbjct: 199 HFTFGSIVKSC--SGLDDFKLARQLHAHVLKS---EFGADLIAQNALISMYTKFSQMADA 253

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA-YKSLIQLEPENPSNYVSLSNLYAS 473
           ++    + ++   S WG++++     G  E++ L  ++ ++      P+ +V  S   A 
Sbjct: 254 INVFSRIIIKDLIS-WGSMIAGFSQLG-YELEALCHFREMLSQSVYQPNEFVFGSAFSAC 311

Query: 474 SR--RWDAVAELRTMMKDRGLKKS--PGCSWISIHGK 506
           S+    D   ++  +    GL      GCS   ++ K
Sbjct: 312 SKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAK 348



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L  S    S ++  Q H  I+  G   +  VS  LI  Y  CG    ++ +F+SI
Sbjct: 506 TLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSI 565

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            + D+  ++SLI GY +     EA ELF  M    V P++ T   I      I     GM
Sbjct: 566 GNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHI-----GM 620

Query: 142 LIHGLSI 148
           +  GL +
Sbjct: 621 VEEGLKL 627


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 181/532 (34%), Positives = 286/532 (53%), Gaps = 40/532 (7%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V   N+T   V   L+V A+       +  H Q++  G  S+ FV   L+  YA CG+  
Sbjct: 128 VGVNNFTYPFV---LKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIG 184

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            +  VF+ +  +DV  + ++I  Y +     +AL LF  M       D+ T  +++   G
Sbjct: 185 DAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVG 244

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
           ++ D  + + +HG ++  GF+ DV + NS++ MY KCG                      
Sbjct: 245 QLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGN--------------------- 283

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                        V R+R VFD+M+ RN  +W +M++GY QNG   +AL LF +MQ  + 
Sbjct: 284 -------------VERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASE- 329

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
            +PN V+ + ++  CS L     G+++H F I  +++ D +L NA++DMY KCG LD A 
Sbjct: 330 CDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAV 389

Query: 313 RVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
            +F +     +D  +W+ ++SGYG+HG G EA+ L+++M   G +P+ IT   +LSAC  
Sbjct: 390 EMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSH 449

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           +GLI+EG + +   +    ++P  +  AC+VDMLGRAG L+ A   IK +P  PS  +WG
Sbjct: 450 AGLIDEGRKCFAD-MTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWG 508

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
           AL+ A  +HGN+E+ ++A  +L QLEPE+   YV +SN+YA+S +W  V  +R  MK RG
Sbjct: 509 ALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRG 568

Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           LKK    S I    + H F  AD++ P    +Y  ++ L + M+     P L
Sbjct: 569 LKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDL 620



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 6/223 (2%)

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N +    M+  Y   G   EA+ L++ MQ +  +  N  +   VL  C+S +G   G+ +
Sbjct: 96  NSFLCNTMLRAYANAGRSYEAIDLYIYMQ-RMGVGVNNFTYPFVLKVCASELGAVFGEVV 154

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           HG  +R     D+ +  AL+DMY+KCG +  A  VF D    +D + W+++++ Y    +
Sbjct: 155 HGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVF-DRMLIRDVVCWTAMITLYEQAER 213

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN-SVINTYRIKPTTEIC 398
             +A++L+ KM   G   D IT + V SA G+ G     + ++  +V+N +       + 
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGF--IGDVSVG 271

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             +V M  + G ++RA      M  E +   W +++S    +G
Sbjct: 272 NSIVGMYAKCGNVERARLVFDRME-ERNGISWNSMLSGYTQNG 313


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 170/508 (33%), Positives = 287/508 (56%), Gaps = 39/508 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           +++ ++ HS+++  G  S+ +V   L+  YA  G    +++VF+ +  +D+  +N++I+G
Sbjct: 177 VEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISG 236

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK--IGFV 153
           Y KN     A  +F  M  + +  D  TL  +     ++K +  G +IHG +++  IG  
Sbjct: 237 YAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIG-N 295

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +    NSL+ MY  C                                  + +V +RR+F
Sbjct: 296 YNKFFTNSLIEMYCNC----------------------------------NCMVDARRLF 321

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           ++++ ++  +W +MI GY +NGD  E+L LF  M L D   P++V+ ++VL  C  +  L
Sbjct: 322 ERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMAL-DGSGPDQVTFIAVLGACDQIAAL 380

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             G  IH + ++K  + +  +  AL+DMYSKCGSL C+RRVF++   +K  ++WS++V+G
Sbjct: 381 RYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMP-DKSLVSWSAMVAG 439

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YGLHG+G EA+ + + M      PD      +LSAC  +GL+ EG EI+  +   Y +KP
Sbjct: 440 YGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKP 499

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
                +C+VD+LGRAG LD A   I+TM ++P+  IW AL++AS +H N ++ +++ + +
Sbjct: 500 ALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKV 559

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
             + P+  S+Y+ LSN+YA+ +RWD V  +R M++ +GLKKSPGCS+I +    H F V 
Sbjct: 560 FDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVG 619

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASP 541
           DK+H  +  IY  L++L   ++ A   P
Sbjct: 620 DKSHQQTEDIYAKLNELKQQLKEAGYKP 647



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 137/320 (42%), Gaps = 41/320 (12%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQIL--SLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           T+   L   A  +++K  K  H   +  S+G+  N F +  LI  Y  C     ++ +F 
Sbjct: 264 TLLGLLSACADLKAVKEGKVIHGYAVRNSIGNY-NKFFTNSLIEMYCNCNCMVDARRLFE 322

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            ++ KD   +NS+I GY +N    E+L LF  M      PD  T   +     +I  L  
Sbjct: 323 RVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRY 382

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           GM IH   +K GF  + I+  +L+ MY KCG  +    +FDEMP +++ SW         
Sbjct: 383 GMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSW--------- 433

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                    +AM+ GY  +G   EA+ +   M+    I  N V 
Sbjct: 434 -------------------------SAMVAGYGLHGRGREAISILDGMKANSVIPDNGV- 467

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN--ALIDMYSKCGSLDCARRVFED 317
             S+L  CS    +  GK+I  + + KE N   +L +   ++D+  + G LD A  +   
Sbjct: 468 FTSILSACSHAGLVVEGKEIF-YKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRT 526

Query: 318 SSFNKDAITWSSIVSGYGLH 337
                 +  W+++++   LH
Sbjct: 527 MEIKPTSDIWAALLTASRLH 546



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 12/209 (5%)

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           L+ ++  +FD +  +N + W  MI GY  NG   ++LVL+ EM    +   N  +   VL
Sbjct: 110 LMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADN-FTYPFVL 168

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             C  L+ +  G+++H   +   L  D+ + N+L+ MY+K G +  AR VF D    +D 
Sbjct: 169 KACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVF-DRMAERDL 227

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG-----RSGLINEGL 379
            +W++++SGY  +     A L+++ M   G   D  T++G+LSAC      + G +  G 
Sbjct: 228 TSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGY 287

Query: 380 EIYNSVINTYRIKPTTEI-----CACVVD 403
            + NS+ N  +    + I     C C+VD
Sbjct: 288 AVRNSIGNYNKFFTNSLIEMYCNCNCMVD 316



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 2/126 (1%)

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           ++L + ++      G+Q+H   I    L ++  L   L   Y+ CG +  A  +F D   
Sbjct: 64  ALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIF-DGIV 122

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            K++  W+ ++ GY  +G   ++++LY +M+C G + D  T   VL ACG   L+  G  
Sbjct: 123 LKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRR 182

Query: 381 IYNSVI 386
           +++ V+
Sbjct: 183 VHSEVV 188


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 183/576 (31%), Positives = 305/576 (52%), Gaps = 73/576 (12%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           +L    H+ I  LGH SN FV T LI AYA+CG    ++  F++I  KD+  +  ++  Y
Sbjct: 58  ELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACY 117

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            +N    ++L+LF+ M     +P+ FT A + K    ++  +VG  +HG  +K  + +D+
Sbjct: 118 AENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDL 177

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            +   L+ +Y K G  ++ L +F+EMP+ +V  W+  IS +A S      V    +F QM
Sbjct: 178 YVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAV---ELFGQM 234

Query: 217 KRR---------------------------------------NVYAWTAMINGYVQNGDL 237
           +R                                        NV+   A+++ Y + G L
Sbjct: 235 RRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRL 294

Query: 238 DEALVLFLEM------------------------------QLKDRIEPNKVSLVSVLPTC 267
           D ++ LF+E+                               L+ +++ ++V+  SVL  C
Sbjct: 295 DNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRAC 354

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           +SL  +  G QIH  +++   + DV + NALIDMY+KCGS+  AR VF+  S  +D I+W
Sbjct: 355 ASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLS-ERDEISW 413

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++++SGY +HG   EA+  +  M      P+ +T V +LSAC  +GL++ G   + S++ 
Sbjct: 414 NAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQ 473

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            Y I+P  E   C+V +LGR+G LD+A+  I+ +P+EP+  +W AL+ A V+H + ++  
Sbjct: 474 DYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGI 533

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
           ++ + ++Q++P++ + +V LSN+YA +RRW++VA +R  MK++G+KK PG SWI   G  
Sbjct: 534 MSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIV 593

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           H FSV D +HP    I  ML+ L +    A   P L
Sbjct: 594 HYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDL 629



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 184/422 (43%), Gaps = 75/422 (17%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           + +LI GYV++   +E ++LFS ++      + F   TI KL   ++   +   +H    
Sbjct: 9   FVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIY 68

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K+G   +  +  +L+  Y  CG  +     FD +  +++ SW   ++ +A +  F     
Sbjct: 69  KLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQ---D 125

Query: 209 SRRVFDQMK---------------------------------------RRNVYAWTAMIN 229
           S ++F +M+                                         ++Y    +++
Sbjct: 126 SLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLD 185

Query: 230 GYVQNGDLDEALVLFLEM-------------------QLKDRIE-----------PNKVS 259
            Y + GD ++ L +F EM                   Q ++ +E           PN+ +
Sbjct: 186 LYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFT 245

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
             SVL +C+S+  L  GKQ+H   ++  L+ +V + NAL+D+Y+KCG LD + ++F +  
Sbjct: 246 FASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP 305

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            N++ +TW++++ GY   G G +A+ LY  M+    +   +T   VL AC     +  G 
Sbjct: 306 -NRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGT 364

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           +I++  + T   K    +   ++DM  + G +  A   +  M  E     W A++S   M
Sbjct: 365 QIHSLSLKTIYDKDVV-VGNALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMISGYSM 422

Query: 440 HG 441
           HG
Sbjct: 423 HG 424



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 100/208 (48%), Gaps = 5/208 (2%)

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  RN  ++  +I GYVQ+  LDE + LF  +  ++  E N     ++L    S+     
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVH-REGHELNPFVFTTILKLLVSVECAEL 59

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
              +H    +     +  +  ALID Y+ CGS++ AR+ F D+   KD ++W+ +V+ Y 
Sbjct: 60  AYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAF-DAIACKDMVSWTGMVACYA 118

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT-YRIKPT 394
            + +  +++ L+ +M  +G  P+  T  GVL AC      + G  ++  V+ T Y +   
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMP 422
             +   ++D+  + G  +  L   + MP
Sbjct: 179 VGV--GLLDLYTKFGDANDVLRVFEEMP 204


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 166/511 (32%), Positives = 274/511 (53%), Gaps = 46/511 (9%)

Query: 42  SHSQILSLGHISNPF-----------VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYN 90
           + S+++SLG   + F               L+  Y+ CG    +++VF  +  + V  Y 
Sbjct: 307 ADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYT 366

Query: 91  SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           S+I GY +     EA++LF  M    +SPD +T+  +       + L+ G  +H    + 
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKEN 426

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
               D+ ++N+LM MY KCG   E                                  + 
Sbjct: 427 DMGFDIFVSNALMDMYAKCGSMRE----------------------------------AE 452

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
            VF +M+ +++ +W  +I GY +N   +EAL LF  + ++ R  P++ ++  VLP C+SL
Sbjct: 453 LVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASL 512

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
                G++IHG+ +R     D  + N+L+DMY+KCG+L  AR +F+D + +KD ++W+ +
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDIT-SKDLVSWTVM 571

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++GYG+HG G EA+ L+N+M   G +PD I+ V +L AC  SGL++EG   +N + +  +
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           I+PT E  AC+VDML R G L +A  FI+ MP+ P  +IWGAL+    +H + ++ +   
Sbjct: 632 IEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVA 691

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + + +LEPEN   YV ++N+YA + +W+ V  LR  +  RGL+K+PGCSWI I G+ + F
Sbjct: 692 EKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIF 751

Query: 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
              D ++P +  I   L  +   M     SP
Sbjct: 752 VAGDSSNPETEKIEAFLRGVRARMIEEGYSP 782



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 205/413 (49%), Gaps = 38/413 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   LQ+ A  +SLK  K+  + I   G + +  + +KL   Y  CG   ++  VF+ +
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV 155

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + +    +N L+N   K+   + ++ LF  M  S V  D +T + +SK    ++ +N G 
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGE 215

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HG  +K GF     + NSL++ Y+K                      N R+       
Sbjct: 216 QLHGYILKSGFGERNSVGNSLVAFYLK----------------------NHRVDS----- 248

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  +R+VFD+M  R+V +W ++INGYV NG  ++ L +F++M L   IE +  ++V
Sbjct: 249 -------ARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQM-LFSGIEIDLATIV 300

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SV   C+    +S G+ +H F ++   + +   CN L+DMYSKCG LD A+ VF + S  
Sbjct: 301 SVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMS-G 359

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +  ++++S+++GY   G   EAV L+ +M   G  PD+ T+  VL+ C R+ L++EG  +
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRV 419

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +   I    +     +   ++DM  + G +  A      M V+   S W  ++
Sbjct: 420 H-EWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIIS-WNTVI 470



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 210/445 (47%), Gaps = 46/445 (10%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           RS+   +Q H  IL  G      V   L+  Y    +   ++ VF+ +  +DV  +NS+I
Sbjct: 209 RSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSII 268

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           NGYV N    + L +F  M +S +  D  T+ ++     + + +++G  +H   +K  F 
Sbjct: 269 NGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFS 328

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +    N+L+ MY KCG                                      ++ VF
Sbjct: 329 REDRFCNTLLDMYSKCGDLDS----------------------------------AKVVF 354

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
            +M  R+V ++T+MI GY + G   EA+ LF EM+ ++ I P+  ++ +VL  C+    L
Sbjct: 355 REMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEME-EEGISPDVYTVTAVLNCCARNRLL 413

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GK++H +    ++  D+ + NAL+DMY+KCGS+  A  VF +    KD I+W++++ G
Sbjct: 414 DEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRV-KDIISWNTVIGG 472

Query: 334 YGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRI 391
           Y  +   +EA+ L+N ++      PD  T+  VL AC      ++G EI+  ++ N Y  
Sbjct: 473 YSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF- 531

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
                +   +VDM  + G L  A      +  +   S W  +++   MHG  +     + 
Sbjct: 532 -SDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVS-WTVMIAGYGMHGFGKEAIALFN 589

Query: 452 SLIQ--LEPENPSNYVSLSNLYASS 474
            + Q  +EP+  S +VSL  LYA S
Sbjct: 590 QMRQAGIEPDEIS-FVSL--LYACS 611



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 148/322 (45%), Gaps = 45/322 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A +R L   K+ H  I       + FVS  L+  YA CG   +++LVF+ +
Sbjct: 399 TVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEM 458

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVG 140
           + KD+  +N++I GY KN   NEAL LF+ +      SPD+ T+A +      +   + G
Sbjct: 459 RVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKG 518

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             IHG  ++ G+  D  +ANSL+ MY KCG       LFD++  +++ SW          
Sbjct: 519 REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSW---------- 568

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                   T MI GY  +G   EA+ LF +M+ +  IEP+++S 
Sbjct: 569 ------------------------TVMIAGYGMHGFGKEAIALFNQMR-QAGIEPDEISF 603

Query: 261 VSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           VS+L  CS    +  G +      H   I   + H       ++DM ++ G+L  A R  
Sbjct: 604 VSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA----CIVDMLARTGNLSKAYRFI 659

Query: 316 EDSSFNKDAITWSSIVSGYGLH 337
           E+     DA  W +++ G  +H
Sbjct: 660 ENMPIPPDATIWGALLCGCRIH 681



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 4/170 (2%)

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           R+V      +  + ++G+L  A+ L L +  K  I+P   +L SVL  C+    L  GK+
Sbjct: 59  RSVTDANTQLRRFCESGNLKNAVKL-LHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKE 115

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +  F        D +L + L  MY+ CG L  A RVF+     K A+ W+ +++     G
Sbjct: 116 VDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEK-ALFWNILMNELAKSG 174

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
               ++ L+ KM+  G + D  T   V  +      +N G +++  ++ +
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKS 224


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 274/474 (57%), Gaps = 36/474 (7%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           + T +I  YA CG    ++ +F+ ++ K+V  ++++I  Y  +    +AL+LF  M  S 
Sbjct: 168 LGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSG 227

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           + PD  TLA++     ++K+L +G LIH +  K G  +D  +  +L+ MY KC +  +  
Sbjct: 228 MLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIED-- 285

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
                                           +R +FD+M  R++  WT MI GY + G+
Sbjct: 286 --------------------------------ARFLFDKMPERDLVTWTVMIGGYAECGN 313

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
            +E+LVLF +M+ ++ + P+KV++V+V+  C+ L  +   + I  +  RK+   DV L  
Sbjct: 314 ANESLVLFDKMR-EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGT 372

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           A+IDM++KCG ++ AR +F D    K+ I+WS++++ YG HG+G +A+ L+  M+  G  
Sbjct: 373 AMIDMHAKCGCVESAREIF-DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGIL 431

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           P+ IT+V +L AC  +GL+ EGL  ++ +   Y ++   +   CVVD+LGRAG+LD AL 
Sbjct: 432 PNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALK 491

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
            I++M VE    +WGA + A   H +  + + A  SL++L+P+NP +Y+ LSN+YA++ R
Sbjct: 492 LIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGR 551

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           W+ VA+ R +M  R LKK PG +WI +  K+H FSV D  HP S  IYEML  L
Sbjct: 552 WEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSL 605



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 205/427 (48%), Gaps = 45/427 (10%)

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           ++ G+ K   +      F  +      PD++TL  + +   ++K+L +G LIH +  K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
             +D  +  +L+ MYVKC +  +   LFD+M +R++ +W V I G               
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGG--------------- 105

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                              Y + G  +E+LVLF +M+ ++ + P+KV++V+V+  C+ L 
Sbjct: 106 -------------------YAECGKANESLVLFEKMR-EEGVVPDKVAMVTVVFACAKLG 145

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            +   + I  +  RK+   DV L  A+IDMY+KCG ++ AR +F D    K+ I+WS+++
Sbjct: 146 AMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF-DRMEEKNVISWSAMI 204

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           + YG HG+G +A+ L+  M+  G  PD IT+  +L AC     +  G  I++ ++  + +
Sbjct: 205 AAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHH-IVYKFGL 263

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
                +CA +VDM G+  +++ A      MP E     W  ++      GN+  + L   
Sbjct: 264 DLDHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGGYAECGNAN-ESLVLF 321

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM-----MKDRGLKKSPGCSWISIHGK 506
             ++ E   P     ++ ++A + +  A+ + RT+      K   L    G + I +H K
Sbjct: 322 DKMREEGVVPDKVAMVTVVFACA-KLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 380

Query: 507 THCFSVA 513
             C   A
Sbjct: 381 CGCVESA 387



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 142/333 (42%), Gaps = 48/333 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   +  ++L++ +  H  +   G   + FV   L+  Y  C +   ++ +F+ +
Sbjct: 234 TLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKM 293

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D+  +  +I GY +    NE+L LF  M    V PD   + T+     ++  ++   
Sbjct: 294 PERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKAR 353

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            I     +  F +DVIL  +++ M+ KCG       +FD M ++NV SW           
Sbjct: 354 TIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISW----------- 402

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  +AMI  Y  +G   +AL LF  M L+  I PNK++LV
Sbjct: 403 -----------------------SAMIAAYGYHGQGRKALDLF-PMMLRSGILPNKITLV 438

Query: 262 SVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           S+L  CS    +  G +        +++R ++ H       ++D+  + G LD A ++ E
Sbjct: 439 SLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKH----YTCVVDLLGRAGRLDEALKLIE 494

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
             +  KD   W + +       + H+ V+L  K
Sbjct: 495 SMTVEKDEGLWGAFLGA----CRTHKDVVLAEK 523


>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
 gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 160/424 (37%), Positives = 249/424 (58%), Gaps = 3/424 (0%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M      P++ T   +         L  G +IH   IK GF  DV    +L+ MY K G 
Sbjct: 1   MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGV 60

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                 +FDEM  R++ +WN  I+G++ SGD    +    +F  M  R+V +WT MI+GY
Sbjct: 61  LMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALE---LFKLMPSRSVVSWTTMISGY 117

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QNG   +AL +FL+M+    + PN+V++ SV   C+ L  L  G++I  +A    L  +
Sbjct: 118 SQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKN 177

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           + + N L++MY++CG +D AR VF +    ++  +W+S++ G  +HG+ +EA+ LY++M+
Sbjct: 178 LYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQML 237

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G +PD +T VG++ AC   GL+ +G +++ S+   + I P  E   C+VD+LGRAG+L
Sbjct: 238 GEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGEL 297

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
             A D +K+MP++P   IWG L+ A   H N E  ++A +SL Q+EP NP NYV L N+Y
Sbjct: 298 QEAYDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEPWNPGNYVILCNIY 357

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           AS++RWD VA+LR +MK   + K+ G S I   G+ H F V DK+HP    IY +L+++ 
Sbjct: 358 ASAQRWDGVAKLRKLMKGGQITKAAGYSVIEGEGEIHKFIVEDKSHPRHYEIYALLNEIS 417

Query: 532 LIMR 535
             M+
Sbjct: 418 TKMK 421



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 145/354 (40%), Gaps = 77/354 (21%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T        A+  SL   K  H+  +  G   + +  T L+  YA  G    ++ VF+ +
Sbjct: 12  TFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLARQVFDEM 71

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNM--------------YYSN----------- 116
             +D+  +NSLI GY ++     ALELF  M              Y  N           
Sbjct: 72  TVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMFL 131

Query: 117 -------VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
                  V P++ T+A++     ++  L VG  I   +   G + ++ ++N+L+ MY +C
Sbjct: 132 KMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARC 191

Query: 170 GKFSECLNLFDEM-PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           GK     ++F+E+  +RN+ SWN                                  +M+
Sbjct: 192 GKIDAARHVFNEIGKRRNLCSWN----------------------------------SMM 217

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH-----GFA 283
            G   +G  +EAL L+ +M L + IEP+ V+ V ++  C+    ++ G Q+       F+
Sbjct: 218 MGLAVHGRSNEALQLYDQM-LGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFS 276

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           I  +L H       ++D+  + G L  A  + +      D++ W +++     H
Sbjct: 277 IVPKLEH----YGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGACSFH 326


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 179/519 (34%), Positives = 287/519 (55%), Gaps = 34/519 (6%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           F    L++AYA  G     +  F+ +  +D   YN+ I G+  N    E+LELF  M   
Sbjct: 90  FSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQRE 149

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
              P ++T+ +I   S ++ DL  G  IHG  I   F+ +V + N+L  MY KCG+  + 
Sbjct: 150 GFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQA 209

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGD----------------------FSLVV------ 207
             LFD + ++N+ SWN+ ISG+A +G                        S ++      
Sbjct: 210 RWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQC 269

Query: 208 ----RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                +RRVF + K +++  WTAM+ GY +NG  ++AL+LF EM L + IEP+  +L SV
Sbjct: 270 GRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLL-EHIEPDSYTLSSV 328

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           + +C+ L  L  G+ +HG +I   LN+++ + +ALIDMYSKCG +D AR VF      ++
Sbjct: 329 VSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMP-TRN 387

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            ++W++++ G   +G   +A+ L+  M+    KPD +T +G+LSAC     I +G E ++
Sbjct: 388 VVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFD 447

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           S+ N + + PT +  AC+V++LGR G++++A+  IK M  +P   IW  L+S     G+ 
Sbjct: 448 SISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDI 507

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
              ++A + L +L+P     Y+ LSN+YAS  RW  VA +R +MK + +KK  G SWI I
Sbjct: 508 VNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEI 567

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
             + H F+  D+ HP S  IYE L+ LI  ++    +P+
Sbjct: 568 DNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPN 606



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 158/300 (52%), Gaps = 22/300 (7%)

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            D  L N L+ +Y K GK  +  NLFD+M +R+  SWN  +S +A SG    +   +  F
Sbjct: 56  TDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGS---IQNLKATF 112

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D+M  R+  ++   I G+  N    E+L LF  MQ ++  EP + ++VS+L   + L+ L
Sbjct: 113 DRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQ-REGFEPTEYTIVSILNASAQLLDL 171

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GKQIHG  I +    +V + NAL DMY+KCG ++ AR +F D    K+ ++W+ ++SG
Sbjct: 172 RYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLF-DCLTKKNLVSWNLMISG 230

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y  +G+  + + L ++M   G  PD +T+  +++A  + G ++E   +++        K 
Sbjct: 231 YAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFS------EFKE 284

Query: 394 TTEICACVVDMLGRA--GQLDRALDFIKTM---PVEPSPSIWGALVS-----ASVMHGNS 443
              +C   + M+G A  G+ + AL     M    +EP      ++VS     AS+ HG +
Sbjct: 285 KDIVCWTAM-MVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQA 343



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 141/290 (48%), Gaps = 48/290 (16%)

Query: 50  GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELF 109
           GH+ +    + +I AY  CG+  +++ VF+  + KD+  + +++ GY KN    +AL LF
Sbjct: 251 GHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLF 310

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
           + M   ++ PD +TL+++     ++  L+ G  +HG SI  G   +++++++L+ MY KC
Sbjct: 311 NEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKC 370

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           G   +  ++F+ MP RNV SWN                                  AMI 
Sbjct: 371 GFIDDARSVFNLMPTRNVVSWN----------------------------------AMIV 396

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-------HGF 282
           G  QNG   +AL LF  M L+ + +P+ V+ + +L  C     +  G++        HG 
Sbjct: 397 GCAQNGHDKDALELFENM-LQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHG- 454

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
            +   L+H   + N L     + G ++ A  + ++ + + D + WS+++S
Sbjct: 455 -MTPTLDHYACMVNLL----GRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 276/472 (58%), Gaps = 8/472 (1%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T L++ Y    +  +++ +F+ +  + +  + ++++GYV+   + E+LELF  M + NV 
Sbjct: 306 TTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVI 365

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           PD+  L T+      ++D ++G  +H   +  G +VD  L N+L+ +Y KCGK  E L  
Sbjct: 366 PDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRT 425

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F+++P ++  SWN  + G   SG    V ++R  F+++  +++ +W  M+N YV++   +
Sbjct: 426 FEQLPCKSAASWNSMLDGFCRSGG---VDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFN 482

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           E+  +F +MQ    ++P+K +L+S+L +C+ +  L+ G  ++ +  + E+  D  L  AL
Sbjct: 483 ESFEIFCKMQ-SSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTAL 541

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           IDMY KCG ++ A  +F      K+   W+++++ Y + G+  EA+ LY +M   G KPD
Sbjct: 542 IDMYGKCGCVEMAYEIFT-QIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPD 600

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            +T + +L+AC   GL++EG + +N + + Y I PT     C+VD+LGR G L+  + FI
Sbjct: 601 HVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFI 660

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
           + MP+EP  SIW +L+ A   H N E+ + A+K LI+++P N   +V LSN+YA + RWD
Sbjct: 661 ERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWD 720

Query: 479 AVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            V+++RT + + G+ K PG + I  +G  H F  ++     S  I  ML D+
Sbjct: 721 DVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLV---SADILCMLQDI 769



 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 139/467 (29%), Positives = 235/467 (50%), Gaps = 39/467 (8%)

Query: 10  FALVTSRNYTSATVQHFL-QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC 68
           + +VT       +  HFL      +  +KL  + H +IL  G   N  ++  L+  Y+ C
Sbjct: 122 YHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKC 181

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
           G+  +   +F  + H+DV  +N++I+ YV    + EAL+LF  M  S V PD+ T+ ++ 
Sbjct: 182 GKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLV 241

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
               ++KDL +G  +H   +     +   L N L+ MY KCGK  E   L     +  V 
Sbjct: 242 STCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVD 301

Query: 189 S--WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
              W   +SG+  S       ++R++FD+M  R++ +WT M++GYVQ G   E+L LF +
Sbjct: 302 VVLWTTLVSGYVKSNKID---KARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQ 358

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           M+ ++ I P++V+LV+VL  C  L     G+ +H F +   +  D  L NAL+D+Y+KCG
Sbjct: 359 MRFENVI-PDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCG 417

Query: 307 SLDCARRVFED------SSFN------------------------KDAITWSSIVSGYGL 336
            LD A R FE       +S+N                        KD ++W+++V+ Y  
Sbjct: 418 KLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVK 477

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           H   +E+  ++ KM     KPD  T++ +LS+C + G +N G+ + N  I    I     
Sbjct: 478 HDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWV-NVYIEKNEIGIDAM 536

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           +   ++DM G+ G ++ A + I T  +E +  +W A+++A  M G +
Sbjct: 537 LGTALIDMYGKCGCVEMAYE-IFTQIIEKNVFVWTAMMAAYAMEGQA 582



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 130/540 (24%), Positives = 235/540 (43%), Gaps = 109/540 (20%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+ +++   I +P ++++++           +  + +     +  ++N+L+   +K    
Sbjct: 55  HAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCP 114

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            E LE + +M    V  D  T   +     +  D+ +G  +HG  +K GF  +  L N+L
Sbjct: 115 QEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNL 174

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           M +Y KCGK  E   LF++M  R+V SWN                               
Sbjct: 175 MGLYSKCGKLKEVCQLFEKMTHRDVISWN------------------------------- 203

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
               MI+ YV  G   EAL LF EM L   + P+++++VS++ TC+ L  L  GK++H +
Sbjct: 204 ---TMISCYVLKGMYREALDLFDEM-LVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLY 259

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLD--------C------------------------ 310
            +  +L    SL N L+DMYSKCG +D        C                        
Sbjct: 260 IVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKID 319

Query: 311 -ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            AR++F D    +  ++W++++SGY   G   E++ L+ +M      PD + +V VLSAC
Sbjct: 320 KARQLF-DKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSAC 378

Query: 370 --------GRS--------GLINEG------LEIY------NSVINTYRIKPTTEICA-- 399
                   GRS        G++ +G      L++Y      +  + T+   P     +  
Sbjct: 379 VHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWN 438

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            ++D   R+G +D+A DF   +P E     W  +V+A V H   ++ + +++   +++  
Sbjct: 439 SMLDGFCRSGGVDKARDFFNKIP-EKDIVSWNTMVNAYVKH---DLFNESFEIFCKMQSS 494

Query: 460 N-PSNYVSLSNLYASSRRWDAV-----AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           N   +  +L +L +S  +  A+       +     + G+    G + I ++GK  C  +A
Sbjct: 495 NVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMA 554



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 6/182 (3%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           ++ +L +CS++   S    IH   I   L HD  + + ++       +LDCA ++    S
Sbjct: 38  IIDLLKSCSNIREFS---PIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILS-YS 93

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
              ++I W++++      G   E +  Y  MV  G   DI T   ++ AC ++  +  G 
Sbjct: 94  HEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGS 153

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           E++  ++          +   ++ +  + G+L       + M      S W  ++S  V+
Sbjct: 154 EVHGRILKC-GFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVIS-WNTMISCYVL 211

Query: 440 HG 441
            G
Sbjct: 212 KG 213



 Score = 38.9 bits (89), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 35/189 (18%), Positives = 73/189 (38%), Gaps = 2/189 (1%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           +  + T LI  Y  CG    +  +F  I  K+V+++ +++  Y       EA++L+  M 
Sbjct: 534 DAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEME 593

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
              V PD  T   +         ++ G    + L      +  +     ++ +  + G  
Sbjct: 594 ERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHL 653

Query: 173 SECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
            E +   + MP + +V  W+  +    S  +  L  ++ +   ++   N  A   + N Y
Sbjct: 654 EETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIY 713

Query: 232 VQNGDLDEA 240
              G  D+ 
Sbjct: 714 ADAGRWDDV 722


>gi|255554336|ref|XP_002518208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542804|gb|EEF44341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 506

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 178/391 (45%), Positives = 242/391 (61%), Gaps = 46/391 (11%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V   +YT AT+    +V      L   K  H   L +G + +  V+  L++ Y  CG+ +
Sbjct: 124 VLPDDYTLATLS---KVCGEIGHLIAGKIIHGLSLKIGFVLDTVVANSLMSMYCKCGEFS 180

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHN---EALELFSNMYYSNVSPDDFTLATISK 129
           ++  +F+ +  + V  +N +I GY  +   N   + ++L  +M      P+ FT++++  
Sbjct: 181 EALKLFDEMPERSVGSWNVVIAGYSDSGDRNLNQQIVDLVKDMQIDGFKPNAFTVSSLLV 240

Query: 130 L-SGEIKDLNVGMLIHGLSIK----IGFV-VDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           L  G+I+ L+ G  +HG  ++    +G +  DV L + L+ MY +  +  +C+ LFD   
Sbjct: 241 LCDGDIEKLDYGRELHGFIVRNELDLGCLGSDVHLGSCLIDMYSRINRVEKCMQLFD--- 297

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
                                          QMKRRNVY WTAMINGYVQNG L+EAL L
Sbjct: 298 -------------------------------QMKRRNVYVWTAMINGYVQNGALEEALTL 326

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           F EMQ KD +EPN+V+LVSVLP CSSL GL GGKQIHG+AIRK LN D SL NALIDMYS
Sbjct: 327 FHEMQAKDGVEPNRVTLVSVLPICSSLAGLPGGKQIHGYAIRKRLNFDASLSNALIDMYS 386

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           KCGSL+ ARRVF++ +F +DAI+WSSI+SGYGLHGKG EAV LY+KM+ LG+KPD IT++
Sbjct: 387 KCGSLNYARRVFDNGTFRRDAISWSSIISGYGLHGKGEEAVFLYDKMLQLGNKPDQITVI 446

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           GV+SACGRSGL+ EGL IYNS I  Y++  T
Sbjct: 447 GVISACGRSGLVYEGLRIYNSAIKCYQLLKT 477



 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 182/470 (38%), Positives = 271/470 (57%), Gaps = 48/470 (10%)

Query: 1   MILSSARNTFALVTSRNYTSATVQ-------HFLQVSATHRSLKLTKQSHSQILSLGHIS 53
           MI+ SA   FA +TSR Y SAT+        + L++S T+  L LT+Q H+QI S+    
Sbjct: 1   MIILSAIKAFAPITSRYYHSATLLSPFQNLLNLLELSITNNCLTLTQQCHAQIFSMDFSQ 60

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           NPF++TKLI+AYA+CG PT S+LVFNS++ K V L+NSLI+GYVKN  + E+  LF  M 
Sbjct: 61  NPFIATKLISAYAICGVPTASKLVFNSLEVKSVPLWNSLISGYVKNQENTESFSLFCQMC 120

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
              V PDD+TLAT+SK+ GEI  L  G +IHGLS+KIGFV+D ++ANSLMSMY KCG+FS
Sbjct: 121 SFGVLPDDYTLATLSKVCGEIGHLIAGKIIHGLSLKIGFVLDTVVANSLMSMYCKCGEFS 180

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
           E L LFDEMP+R+VGSWNV I+G++ SGD +L   ++++ D +K                
Sbjct: 181 EALKLFDEMPERSVGSWNVVIAGYSDSGDRNL---NQQIVDLVK---------------- 221

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI-GLSGGKQIHGFAIRKELN--- 289
                       +MQ+ D  +PN  ++ S+L  C   I  L  G+++HGF +R EL+   
Sbjct: 222 ------------DMQI-DGFKPNAFTVSSLLVLCDGDIEKLDYGRELHGFIVRNELDLGC 268

Query: 290 --HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
              DV L + LIDMYS+   ++   ++F D    ++   W+++++GY  +G   EA+ L+
Sbjct: 269 LGSDVHLGSCLIDMYSRINRVEKCMQLF-DQMKRRNVYVWTAMINGYVQNGALEEALTLF 327

Query: 348 NKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           ++M    G +P+ +T+V VL  C     +  G +I+   I   R+     +   ++DM  
Sbjct: 328 HEMQAKDGVEPNRVTLVSVLPICSSLAGLPGGKQIHGYAIRK-RLNFDASLSNALIDMYS 386

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           + G L+ A               W +++S   +HG  E     Y  ++QL
Sbjct: 387 KCGSLNYARRVFDNGTFRRDAISWSSIISGYGLHGKGEEAVFLYDKMLQL 436


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 180/496 (36%), Positives = 282/496 (56%), Gaps = 10/496 (2%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           + +V   LI  YA        +++F+ +  +DV  +N +I+GYVK     +A+ +F  M 
Sbjct: 171 DTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQ 230

Query: 114 Y-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
             S + PD+ T+ +       +K L +G  IH   ++       I+ N+L+ MY KCG  
Sbjct: 231 EESGLMPDEATVVSTLSACTALKRLELGKKIHHY-VRDNVKFTPIIGNALLDMYCKCGCL 289

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
           S    +F+EMP +NV  W   +SG+A+ G+      +R +F+    R+V  WTAMINGYV
Sbjct: 290 SIARAVFEEMPSKNVICWTTMVSGYANCGELE---EARELFEGSPIRDVVIWTAMINGYV 346

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           Q    DEA+ LF EMQ++ +++P+K  +VS+L  C+    +  GK IH F     +  D 
Sbjct: 347 QFNRFDEAVALFREMQIR-KVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDA 405

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            +  ALI+MY+KCG ++ A  +F      KD  +W+SI+ G  ++GK  +A+ L++KM  
Sbjct: 406 VVGTALIEMYAKCGFIEKALEIFYGLRV-KDTASWTSIICGLAMNGKTSKALELFSKMKQ 464

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G +PD IT +GVLSAC   GL+ EG + +NS+   Y+IKP  E   C+VD+LGRAG L+
Sbjct: 465 AGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLN 524

Query: 413 RALDFIKTMPVEPSP---SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
            A + IK +P E       ++G+L+SA  ++GN EM +   K L++ E  + S +  L+N
Sbjct: 525 EAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLLAN 584

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
           +YA + RW+ V ++R  MKD G+KK+PGCS I +    H F     +HP    IY ML+ 
Sbjct: 585 IYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSGHPSHPEMREIYYMLNI 644

Query: 530 LILIMRGAAASPHLGK 545
           +   + G+A +   G+
Sbjct: 645 MAKPLLGSAKNEMEGE 660



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 214/474 (45%), Gaps = 76/474 (16%)

Query: 5   SARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITA 64
           S R+ F+  T+   T  + Q  +    + +S+   KQ H+QI  +G   +     KL+  
Sbjct: 20  SRRSKFSTFTNPT-TGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLM-- 76

Query: 65  YALCGQPTQSQL-----VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            A C  P    L     +F  I++  + +YN +I  + K   +   L LFS +    + P
Sbjct: 77  -AFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWP 135

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D+FT   + K  G + +++    + GL  K G   D  + NSL+ MY +         LF
Sbjct: 136 DNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLF 195

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           DEMP R+V SWNV                                  MI+GYV+    ++
Sbjct: 196 DEMPDRDVISWNV----------------------------------MISGYVKCRRFED 221

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           A+ +F  MQ +  + P++ ++VS L  C++L  L  GK+IH + +R  +     + NAL+
Sbjct: 222 AINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHY-VRDNVKFTPIIGNALL 280

Query: 300 DMYSKCGSLDCARRVFE------------------------------DSSFNKDAITWSS 329
           DMY KCG L  AR VFE                              + S  +D + W++
Sbjct: 281 DMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTA 340

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           +++GY    +  EAV L+ +M     KPD   +V +L+ C ++G I +G  I+   I+  
Sbjct: 341 MINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIH-EFIDEN 399

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           RI     +   +++M  + G +++AL+    + V+ + S W +++    M+G +
Sbjct: 400 RIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTAS-WTSIICGLAMNGKT 452


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 169/498 (33%), Positives = 277/498 (55%), Gaps = 39/498 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K+ H+ I+      + F+ TK++      G+   + L+F  +   + +LYN++I  Y  N
Sbjct: 76  KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 135

Query: 100 HGHNEALELFSNMY-----YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
             +  A+ ++  M       + + PD FT   + K    +   ++G  +HG   K G   
Sbjct: 136 KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 195

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           + ++ NSL+ MYVKC    +   +F+EM +R+                            
Sbjct: 196 NTVVENSLVEMYVKCDSLDDAHRVFEEMTERDA--------------------------- 228

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                 +++WTA+++GY + G   +AL  F  MQ+   IEP+++SLVSVLP C+ L  L 
Sbjct: 229 -----TIFSWTAIVSGYARIGCYADALEFFRRMQMVG-IEPDEISLVSVLPDCAQLGALE 282

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK IH +A +     ++ +CNALI+MY+KCGS+D  RR+F D    +D I+WS+++ G 
Sbjct: 283 LGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLF-DQMKERDVISWSTMIVGL 341

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG+  EA+ L+ +M     +P IIT VG+L+AC  +GL+NEGL  + S+   Y I+P 
Sbjct: 342 ANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPG 401

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+V++LG +G+LD+AL+ +K MP +P   IWG+L+S+   HGN ++  +A + L+
Sbjct: 402 VEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLL 461

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEP +  NYV LSNLYA   +WD V+ +R +M+ + +KK+PGCS I +      F+  D
Sbjct: 462 ELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGD 521

Query: 515 KAHPCSVSIYEMLDDLIL 532
            + P S +I  +L  L++
Sbjct: 522 DSKPFSKAICRVLKLLVM 539



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 145/312 (46%), Gaps = 40/312 (12%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD--VYLYNSLING 95
           L KQ H  +   G  SN  V   L+  Y  C     +  VF  +  +D  ++ + ++++G
Sbjct: 180 LGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSG 239

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y +   + +ALE F  M    + PD+ +L ++     ++  L +G  IH  + K GF+ +
Sbjct: 240 YARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRN 299

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + + N+L+ MY KCG   +   LFD+M +R+V SW+  I G A+ G      R+R     
Sbjct: 300 ICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHG------RAR----- 348

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                                  EA+ LF EMQ K +IEP+ ++ V +L  C+    L+ 
Sbjct: 349 -----------------------EAIELFQEMQ-KAKIEPSIITFVGLLTACAHAGLLNE 384

Query: 276 GKQIHGFAIRKELNHD--VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           G + +  +++++ N +  V     L+++    G LD A  + +      D+  W S++S 
Sbjct: 385 GLR-YFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSS 443

Query: 334 YGLHGKGHEAVL 345
              HG    AV+
Sbjct: 444 CRSHGNLKIAVI 455



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 6/208 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+L K  H      G + N  V   LI  YA CG   Q + +F+ ++ +DV  ++++I 
Sbjct: 280 ALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIV 339

Query: 95  GYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           G + NHG   EA+ELF  M  + + P   T   +         LN G L +  S+K  + 
Sbjct: 340 G-LANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEG-LRYFESMKRDYN 397

Query: 154 VD--VILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVRSR 210
           ++  V     L+++    G+  + L L  +MP++ +   W   +S   S G+  + V + 
Sbjct: 398 IEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAM 457

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLD 238
               +++  +   +  + N Y   G  D
Sbjct: 458 EHLLELEPADTGNYVLLSNLYADLGKWD 485



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 105/234 (44%), Gaps = 22/234 (9%)

Query: 242 VLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           +  LEM+L+  +I   +   V +L  C +++ L   K+IH   ++  L+    L   ++D
Sbjct: 43  IYVLEMKLRALKIREMEDMFVPILKDCPNIVEL---KKIHAHIVKFSLSQSSFLVTKMVD 99

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE-AVLLYNKMVCLGSK--- 356
           + +  G  + A  +F+  + + +A  +++++  Y  H K +  A+ +Y +M  LG+    
Sbjct: 100 VCNHYGETEYANLLFKGVA-DPNAFLYNAMIRAYK-HNKVYVLAITVYKQM--LGNPHGE 155

Query: 357 ----PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
               PD  T   V+ +C      + G +++  V   +  K  T +   +V+M  +   LD
Sbjct: 156 NPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFK-FGQKSNTVVENSLVEMYVKCDSLD 214

Query: 413 RALDFIKTMPVEPSPSI--WGALVSASVMHG--NSEMQDLAYKSLIQLEPENPS 462
            A    + M  E   +I  W A+VS     G     ++      ++ +EP+  S
Sbjct: 215 DAHRVFEEM-TERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEIS 267


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 176/527 (33%), Positives = 290/527 (55%), Gaps = 58/527 (11%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV---------Y 87
           ++ K+ H   +  G +S+ FV   L+  Y+ CG    ++L+F+ +  +DV         Y
Sbjct: 126 RMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAY 185

Query: 88  L-------------YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI 134
           +             + ++I GY++ +   E   LF  M   NV P+D T+ ++    G +
Sbjct: 186 ITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFV 245

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
             + +G  +H   ++ GF + + LA +L+ MY KCG+                       
Sbjct: 246 GAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGE----------------------- 282

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
                      +  +R +FD MK ++V  WTAMI+ Y Q   +D A  LF++M+  + + 
Sbjct: 283 -----------IRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMR-DNGVR 330

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           PN++++VS+L  C+    L  GK  H +  ++ +  DV L  ALIDMY+KCG +  A+R+
Sbjct: 331 PNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRL 390

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F ++  ++D  TW+ +++GYG+HG G +A+ L+ +M  LG KP+ IT +G L AC  +GL
Sbjct: 391 FSEA-IDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGL 449

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           + EG  ++  +I+ + + P  E   C+VD+LGRAG LD A   I++MPV P+ +IWGA++
Sbjct: 450 VVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAML 509

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
           +A  +H NS M +LA + L+ LEP+N    V +SN+YA++ RW+ VA +R  +KD G+KK
Sbjct: 510 AACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKK 569

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            PG S I ++G  H F + D AHP    I EML ++   ++ A   P
Sbjct: 570 EPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLP 616



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 195/372 (52%), Gaps = 21/372 (5%)

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           AL  ++ M   ++  D F + ++ K   +I    +G  IHG S+K G V DV + N+LM 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MY +CG       LFD+M +R+V SW+  I  + +            +F    +R++ +W
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYIT------------LFYGFSQRSIVSW 200

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           TAMI GY++  DL+E   LF+ M +++ + PN ++++S++ +C  +  +  GK++H + +
Sbjct: 201 TAMIAGYIRCNDLEEGERLFVRM-IEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYIL 259

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R      ++L  AL+DMY KCG +  AR +F DS  NKD +TW++++S Y        A 
Sbjct: 260 RNGFGMSLALATALVDMYGKCGEIRSARAIF-DSMKNKDVMTWTAMISAYAQANCIDYAF 318

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+ +M   G +P+ +T+V +LS C  +G ++ G + +++ I+   ++    +   ++DM
Sbjct: 319 QLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTALIDM 377

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP--ENPS 462
             + G +  A     +  ++     W  +++   MHG  E    A K   ++E     P+
Sbjct: 378 YAKCGDISGAQRLF-SEAIDRDICTWNVMMAGYGMHGYGEK---ALKLFTEMETLGVKPN 433

Query: 463 NYVSLSNLYASS 474
           +   +  L+A S
Sbjct: 434 DITFIGALHACS 445



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 150/324 (46%), Gaps = 44/324 (13%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +++L K+ H+ IL  G   +  ++T L+  Y  CG+   ++ +F+S+++KDV  + ++I+
Sbjct: 247 AVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMIS 306

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            Y + +  + A +LF  M  + V P++ T+ ++  L      L++G   H    K G  V
Sbjct: 307 AYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEV 366

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           DVIL  +L+ MY KCG  S    LF E   R++ +WNV                      
Sbjct: 367 DVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNV---------------------- 404

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS--SLIG 272
                       M+ GY  +G  ++AL LF EM+    ++PN ++ +  L  CS   L+ 
Sbjct: 405 ------------MMAGYGMHGYGEKALKLFTEMETLG-VKPNDITFIGALHACSHAGLVV 451

Query: 273 LSGG---KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
              G   K IH F +  ++ H       ++D+  + G LD A ++ E      +   W +
Sbjct: 452 EGKGLFEKMIHDFGLVPKVEH----YGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCL 353
           +++   +H   +   L   +++ L
Sbjct: 508 MLAACKIHKNSNMGELAARELLAL 531



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L + A + +L + K  H+ I   G   +  + T LI  YA CG  + +Q +F+  
Sbjct: 335 TMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEA 394

Query: 82  QHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNV 139
             +D+  +N ++ GY   HG+ E AL+LF+ M    V P+D T +  +   S      + 
Sbjct: 395 IDRDICTWNVMMAGY-GMHGYGEKALKLFTEMETLGVKPNDITFIGALHACS------HA 447

Query: 140 GMLIHGLSI------KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNV 192
           G+++ G  +        G V  V     ++ +  + G   E   + + MP   N+  W  
Sbjct: 448 GLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507

Query: 193 RISG---HASSGDFSLVVRS 209
            ++    H +S    L  R 
Sbjct: 508 MLAACKIHKNSNMGELAARE 527


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 178/509 (34%), Positives = 283/509 (55%), Gaps = 36/509 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  A     +L +Q HS ++ +   S+ F +  L+  Y+ C     ++  ++S+
Sbjct: 286 TLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM 345

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD+  +N+LI+GY +   H +A+ LFS M+  ++  +  TL+T+ K    ++ + V  
Sbjct: 346 PKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCK 405

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH +SIK G   D  + NSL+  Y KC    E   +F+E       +W           
Sbjct: 406 QIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEER------TW----------- 448

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                             ++ A+T+MI  Y Q GD +EAL L+L+MQ  D I+P+     
Sbjct: 449 -----------------EDLVAYTSMITAYSQYGDGEEALKLYLQMQDAD-IKPDPFICS 490

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C++L     GKQ+H  AI+     D+   N+L++MY+KCGS++ A R F +   N
Sbjct: 491 SLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP-N 549

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +  ++WS+++ GY  HG G EA+ L+N+M+  G  P+ IT+V VL AC  +GL+NEG + 
Sbjct: 550 RGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQY 609

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  +   + IKPT E  AC++D+LGR+G+L+ A++ + ++P E    +WGAL+ A+ +H 
Sbjct: 610 FEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHK 669

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+   A K L  LEPE    +V L+N+YAS+  W+ VA++R  MKD  +KK PG SWI
Sbjct: 670 NIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWI 729

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            I  K + F V D++H  S  IY  LD L
Sbjct: 730 EIKDKVYTFIVGDRSHSRSDEIYAKLDQL 758



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 205/402 (50%), Gaps = 42/402 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+ ++  G   +P +   L+T Y+ C +   ++ + +     DV  ++SL++GYV+N   
Sbjct: 4   HAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFV 63

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EAL +F+ M    V  ++FT  ++ K     +DLN+G  +HG+++  GF  D  +AN+L
Sbjct: 64  EEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTL 123

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + MY KCG   +   LF  + +RNV SWN                               
Sbjct: 124 VVMYAKCGLLDDSRRLFGGIVERNVVSWN------------------------------- 152

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
              A+ + YVQ+    EA+ LF EM ++  I PN+ S+  +L  C+ L     G++IHG 
Sbjct: 153 ---ALFSCYVQSELCGEAVGLFKEM-VRSGIMPNEFSISIILNACAGLQEGDLGRKIHGL 208

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            ++  L+ D    NAL+DMYSK G ++ A  VF+D + + D ++W++I++G  LH     
Sbjct: 209 MLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA-HPDVVSWNAIIAGCVLHDCNDL 267

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV- 401
           A++L ++M   G++P++ T+   L AC   G    G ++++S+I   ++   +++ A V 
Sbjct: 268 ALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLI---KMDAHSDLFAAVG 324

Query: 402 -VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            VDM  +   +D A     +MP +     W AL+S     G+
Sbjct: 325 LVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALISGYSQCGD 365



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/514 (23%), Positives = 232/514 (45%), Gaps = 75/514 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  +  R L + ++ H   +  G  S+ FV+  L+  YA CG    S+ +F  I
Sbjct: 84  TFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGI 143

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             ++V  +N+L + YV++    EA+ LF  M  S + P++F+++ I      +++ ++G 
Sbjct: 144 VERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGR 203

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA--S 199
            IHGL +K+G  +D   AN+L+ MY K G+    + +F ++   +V SWN  I+G     
Sbjct: 204 KIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHD 263

Query: 200 SGDFSLVVRSRRV----------------------FDQMKRR------------NVYAWT 225
             D +L++                           F ++ R+            +++A  
Sbjct: 264 CNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAV 323

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKD------------------------------RIEP 255
            +++ Y +   +D+A   +  M  KD                               I+ 
Sbjct: 324 GLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDF 383

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N+ +L +VL + +SL  +   KQIH  +I+  +  D  + N+L+D Y KC  +D A ++F
Sbjct: 384 NQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIF 443

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
           E+ ++ +D + ++S+++ Y  +G G EA+ LY +M     KPD      +L+AC      
Sbjct: 444 EERTW-EDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAY 502

Query: 376 NEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            +G +++   ++  +     +I A   +V+M  + G ++ A      +P     S W A+
Sbjct: 503 EQGKQLH---VHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVS-WSAM 558

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           +     HG+ +     +  +  L    P N+++L
Sbjct: 559 IGGYAQHGHGKEALRLFNQM--LRDGVPPNHITL 590



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 44/326 (13%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           ++   T+   L+  A+ +++K+ KQ H+  +  G  S+ +V   L+  Y  C    ++  
Sbjct: 382 DFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASK 441

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F     +D+  Y S+I  Y +     EAL+L+  M  +++ PD F  +++      +  
Sbjct: 442 IFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSA 501

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
              G  +H  +IK GF+ D+  +NSL++MY KCG   +    F E+P R + SW+  I G
Sbjct: 502 YEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGG 561

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +A                                  Q+G   EAL LF +M L+D + PN
Sbjct: 562 YA----------------------------------QHGHGKEALRLFNQM-LRDGVPPN 586

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            ++LVSVL  C+    ++ GKQ        F I+    H       +ID+  + G L+ A
Sbjct: 587 HITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYA----CMIDLLGRSGKLNEA 642

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLH 337
             +     F  D   W +++    +H
Sbjct: 643 VELVNSIPFEADGFVWGALLGAARIH 668



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 152/317 (47%), Gaps = 41/317 (12%)

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
           M +H   IK GF  D  L N L+++Y KC +F     L DE  + +V SW+  +S     
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLS----- 55

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                        GYVQNG ++EAL++F EM L   ++ N+ + 
Sbjct: 56  -----------------------------GYVQNGFVEEALLVFNEMCLLG-VKCNEFTF 85

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            SVL  CS    L+ G+++HG A+      D  + N L+ MY+KCG LD +RR+F     
Sbjct: 86  PSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLF-GGIV 144

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            ++ ++W+++ S Y       EAV L+ +MV  G  P+  +I  +L+AC      + G +
Sbjct: 145 ERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRK 204

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           I+  ++    +         +VDM  +AG+++ A+   + +   P    W A+++  V+H
Sbjct: 205 IHGLMLKM-GLDLDQFSANALVDMYSKAGEIEGAVAVFQDI-AHPDVVSWNAIIAGCVLH 262

Query: 441 GNSEMQDLAYKSLIQLE 457
              +  DLA   L +++
Sbjct: 263 ---DCNDLALMLLDEMK 276


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 298/560 (53%), Gaps = 80/560 (14%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+ +L   +  N FV+  LI  YA  G+  ++  +F ++   D   +NS+++G+V+N  +
Sbjct: 305 HATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLY 364

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV--GMLIHGLSIKIGFVVDVILAN 160
           +EAL+ +  M  +   PD   +A IS ++   +  N   GM IH  ++K G   D+ + N
Sbjct: 365 HEALQFYHEMRDAGQKPD--LVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGN 422

Query: 161 SLMSMYVK-CG-KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
           SL+ MY K C  K+ +C+  FD+MP ++V SW   I+GHA +G  S   R+  +F +++ 
Sbjct: 423 SLVDMYAKFCSMKYMDCI--FDKMPDKDVVSWTTIIAGHAQNGSHS---RALELFREVQL 477

Query: 219 RNVYAWTAMI----------------------------------NG----YVQNGDLDEA 240
             +     MI                                  NG    Y + G++D A
Sbjct: 478 EGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYA 537

Query: 241 LVLFLEMQLKD------------------------------RIEPNKVSLVSVLPTCSSL 270
             +F  ++ KD                               +EP+ +SLVS+L   +SL
Sbjct: 538 ARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASL 597

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  GK+IHGF IRK    + SL + L+DMY++CG+L+ +R VF +   NKD + W+S+
Sbjct: 598 SALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF-NFIRNKDLVLWTSM 656

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++ YG+HG G  A+ L+ +M      PD I  V VL AC  SGL+NEG     S+   Y+
Sbjct: 657 INAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQ 716

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           ++P  E  AC+VD+LGRA  L+ A  F+K M VEP+  +W AL+ A  +H N E+ ++A 
Sbjct: 717 LEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAA 776

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + L++++PENP NYV +SN+Y++ RRW  V  +R  MK  GLKK+PGCSWI +  K H F
Sbjct: 777 QKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTF 836

Query: 511 SVADKAHPCSVSIYEMLDDL 530
              DK+HP S  IY  L  +
Sbjct: 837 MARDKSHPQSYEIYSKLSQI 856



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 211/433 (48%), Gaps = 41/433 (9%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNP-FVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           L++  + ++L   +Q H+ +++   + N  F+ST+L+  Y  CG    ++ +F+ + HK 
Sbjct: 85  LELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKT 144

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           ++ +N++I  YV N     +LEL+  M  S +  D  T   I K  G +KD   G  +HG
Sbjct: 145 IFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHG 204

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFS 204
           L+IK G+V  V +ANS++ MY KC   +    LFD MP++ +V SWN  IS ++S     
Sbjct: 205 LAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS----- 259

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
                                        NG   EAL LF EMQ K  + PN  + V+ L
Sbjct: 260 -----------------------------NGQSIEALRLFGEMQ-KASLAPNTYTFVAAL 289

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             C     +  G  IH   ++     +V + NALI MY++ G +  A  +F +   + D 
Sbjct: 290 QACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD-DWDT 348

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           I+W+S++SG+  +G  HEA+  Y++M   G KPD++ ++ +++A  RSG    G++I+  
Sbjct: 349 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAY 408

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            +    +    ++   +VDM  +   +         MP +   S W  +++    +G S 
Sbjct: 409 AMKN-GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS-WTTIIAGHAQNG-SH 465

Query: 445 MQDLAYKSLIQLE 457
            + L     +QLE
Sbjct: 466 SRALELFREVQLE 478



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 231/493 (46%), Gaps = 79/493 (16%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T    L+     +  +   + H   +  G++S  FV+  ++  Y  C     ++ +F+
Sbjct: 180 ACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFD 239

Query: 80  SIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            +  K DV  +NS+I+ Y  N    EAL LF  M  ++++P+ +T     +   +   + 
Sbjct: 240 RMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIK 299

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            GM IH   +K  + ++V +AN+L++MY + GK  E  N+F  M   +  SWN  +SG  
Sbjct: 300 QGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFV 359

Query: 199 SSGDF-----------------------SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
            +G +                       S++  S R  + +    ++A+ AM NG   + 
Sbjct: 360 QNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAY-AMKNGLDSDL 418

Query: 236 DLDEALV--------------LFLEMQLKD------------------------------ 251
            +  +LV              +F +M  KD                              
Sbjct: 419 QVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLE 478

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            I+ + + + S+L  CS L  +S  K+IH + IRK L+ D+ L N ++D+Y +CG++D A
Sbjct: 479 GIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYA 537

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
            R+FE   F KD ++W+S++S Y  +G  +EA+ L++ M   G +PD I++V +LSA   
Sbjct: 538 ARMFELIEF-KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAAS 596

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA---LDFIKTMPVEPSPS 428
              + +G EI+  +I    +   + + + +VDM  R G L+++    +FI+   +     
Sbjct: 597 LSALKKGKEIHGFLIRKGFVLEGS-LASTLVDMYARCGTLEKSRNVFNFIRNKDL----V 651

Query: 429 IWGALVSASVMHG 441
           +W ++++A  MHG
Sbjct: 652 LWTSMINAYGMHG 664



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 255 PNKVSL----VSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLD 309
           P++ SL     SVL  C S   LS G+Q+H   I    L + V L   L+ MY KCG L 
Sbjct: 72  PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 131

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            A ++F D   +K   TW++++  Y  +G+   ++ LY +M   G   D  T   +L AC
Sbjct: 132 DAEKLF-DGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC 190

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
           G       G E++   I    +     +   +V M  +   L+ A      MP +     
Sbjct: 191 GLLKDRRYGAEVHGLAIKEGYVS-IVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVS 249

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
           W +++SA   +G S ++ L     +Q     P+ Y  ++ L A
Sbjct: 250 WNSMISAYSSNGQS-IEALRLFGEMQKASLAPNTYTFVAALQA 291



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           K  K+ H  ++  G +    +++ L+  YA CG   +S+ VFN I++KD+ L+ S+IN Y
Sbjct: 601 KKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAY 660

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
             +     A++LF  M   +++PD      +
Sbjct: 661 GMHGCGRAAIDLFRRMEDESIAPDHIAFVAV 691


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 184/517 (35%), Positives = 278/517 (53%), Gaps = 5/517 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  A      L    H+Q   LG  S+  V   ++  Y  CG  T ++ VF+ I
Sbjct: 136 TIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDI 195

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             + +  +NS+INGY K     EA+ +F  M    + PD FTL  +  +S +  + ++G 
Sbjct: 196 SERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGR 255

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   +  G  +D I+ N+LM MY KCG      ++FD+M  ++V SW   I+ +A+ G
Sbjct: 256 FVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHG 315

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
              L+  +   F+QM  +NV +W ++I  +VQ G   EA+ LF  M     +  N  +LV
Sbjct: 316 ---LIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRM-CDSGVMANDTTLV 371

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           ++L +CS +  L+ GKQ H +     +    +LCNA+IDMY+KCG+L  A  VF      
Sbjct: 372 AILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMP-E 430

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K+A++W+ I+    LHG G EA+ ++ KM   G  PD IT  G+LSAC  SGL++ G   
Sbjct: 431 KNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHY 490

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  +  T+ I P  E  AC+VD+LGR G L  A+  IK MPV+P   +W AL+ A   +G
Sbjct: 491 FEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYG 550

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N  +     K L++L   N   YV LSN+Y+ S+RWD +  +  ++   G+KK    S+I
Sbjct: 551 NLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFI 610

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
            I G  + F V DK H  S SIY ML  L+  ++ A 
Sbjct: 611 EIDGCCYQFMVDDKRHGASTSIYSMLGQLMDHLKSAG 647



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 198/438 (45%), Gaps = 69/438 (15%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SLK  K  H+QI+  G  +      KL+++         +  +F+ I   + +++N LI 
Sbjct: 48  SLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIK 107

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY  +    ++L L+  M    + P+ FT+  + K         +G+ +H  S K+G   
Sbjct: 108 GYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGS 167

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
              + N+++++YV CG  +    +FD++ +R + SWN                       
Sbjct: 168 HACVQNAILNIYVACGLITSARRVFDDISERTLVSWN----------------------- 204

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                      +MINGY + G  +EA+++F EMQ +  +EP+  +LV +L   +      
Sbjct: 205 -----------SMINGYSKMGRSEEAVLMFREMQ-EVGLEPDVFTLVGLLSVSTKHGNFD 252

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+ +H   +   +  D  + NAL+DMY+KCG+L CA+ VF D   +KD ++W+ +++ Y
Sbjct: 253 LGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVF-DQMLDKDVVSWTCMINAY 311

Query: 335 GLHG-----------------------------KG--HEAVLLYNKMVCLGSKPDIITIV 363
             HG                             +G   EAV L+ +M   G   +  T+V
Sbjct: 312 ANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLV 371

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            +LS+C   G +  G + ++ + +   I  +  +C  ++DM  + G L  A+D    MP 
Sbjct: 372 AILSSCSHMGDLALGKQAHSYIFDN-NITLSATLCNAIIDMYAKCGALQTAMDVFFGMP- 429

Query: 424 EPSPSIWGALVSASVMHG 441
           E +   W  ++ A  +HG
Sbjct: 430 EKNAVSWNVIIGALALHG 447


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 171/502 (34%), Positives = 282/502 (56%), Gaps = 38/502 (7%)

Query: 42  SHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101
           +HS +L  G  ++  V   LIT Y+ CG+   ++ VF+ I  KD+  +NS+I+GY +   
Sbjct: 148 AHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGY 207

Query: 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
             +A+ LF  M  +   PD+ TL +I    G++ DL +G  I G  ++    ++  + ++
Sbjct: 208 AGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSA 267

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+ MY KCG  S                                   +RRVFD+M +++V
Sbjct: 268 LIGMYGKCGDLSS----------------------------------ARRVFDRMVKKDV 293

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
             W AMI GY QNG  DEA++LF  M+ +  + P+K++LV VL  C+S+  L  GK +  
Sbjct: 294 VTWNAMITGYAQNGVSDEAIILFSGMR-ESGVNPDKITLVGVLSACASIGALDFGKWLDT 352

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           +A  + L +D+ +  ALIDMY+KCGSLD A RVFED    K+ ++W++++S    HG+  
Sbjct: 353 YASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMP-QKNEVSWNAMISALAFHGRPQ 411

Query: 342 EAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           E++ L+ +M   G   +P+ I+ +GVLSAC  +GL++EG ++++ + +++ + P  E  +
Sbjct: 412 ESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHS 471

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VD+L RAG +  A DFI+ MP +P   + GAL+ A     N ++ +     L+++EP 
Sbjct: 472 CMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPL 531

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           N  NY+  S ++A+ +RWD  A +R +M+ RG+ K+PGCSWI I  + H F   D  H  
Sbjct: 532 NSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIENQVHEFHAGDVLHFI 591

Query: 520 SVSIYEMLDDLILIMRGAAASP 541
           S  + ++++ L   M+     P
Sbjct: 592 SQDMCQVINLLNEEMKVEGYGP 613


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 172/494 (34%), Positives = 275/494 (55%), Gaps = 37/494 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   LQ       L+  K  H  +++ G+  +   S  LI  YA CG    SQ VF+ +
Sbjct: 318 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 377

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KD   +NS+IN Y++N   +EA++LF  M  ++V PD  T   +  +S ++ DL++G 
Sbjct: 378 KCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGK 436

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H    K+GF  +++++N+L+ MY KCG+  + L                         
Sbjct: 437 ELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSL------------------------- 471

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                    +VF+ MK R++  W  +I   V + D +  L +   M+  + + P+  +++
Sbjct: 472 ---------KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR-TEGVTPDMATML 521

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+LP CS L     GK+IHG   +  L  DV + N LI+MYSKCGSL  + +VF+     
Sbjct: 522 SILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK-T 580

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD +TW++++S  G++G+G +AV  + +M   G  PD +  V ++ AC  SGL+ EGL  
Sbjct: 581 KDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNY 640

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++ +   Y+I+P  E  ACVVD+L R+  LD+A DFI +MP++P  SIWGAL+SA  M G
Sbjct: 641 FHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSG 700

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           ++E+ +   + +I+L P++   YV +SN+YA+  +WD V  +R  +K RGLKK PGCSW+
Sbjct: 701 DTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWM 760

Query: 502 SIHGKTHCFSVADK 515
            I  K + F    K
Sbjct: 761 EIQNKVYVFGTGTK 774



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 208/424 (49%), Gaps = 43/424 (10%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
            ++ K  H ++L +G  S+ ++   LI  Y       +++ VF  +  +DV  +NSLI+G
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y  N   NEALE++       V PD +T++++ +  G +  +  G +IHGL  KIG   D
Sbjct: 191 YNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKD 250

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           VI+ N L+SMY K     +   +FD+M  R+  SWN                        
Sbjct: 251 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWN------------------------ 286

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                      MI GY Q G  +E++ LF+EM   ++ +P+ +++ S+L  C  L  L  
Sbjct: 287 ----------TMICGYSQVGLYEESIKLFMEMV--NQFKPDLLTITSILQACGHLGDLEF 334

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK +H + I      D +  N LI+MY+KCG+L  ++ VF      KD+++W+S+++ Y 
Sbjct: 335 GKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC-KDSVSWNSMINVYI 393

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            +G   EA+ L+ KM+    KPD +T V +LS   + G ++ G E++  +          
Sbjct: 394 QNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKM-GFNSNI 451

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            +   +VDM  + G++  +L   + M      + W  ++++ V   +SE  +L  + + +
Sbjct: 452 VVSNTLVDMYAKCGEMGDSLKVFENMKARDIIT-WNTIIASCV---HSEDCNLGLRMISR 507

Query: 456 LEPE 459
           +  E
Sbjct: 508 MRTE 511



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 200/429 (46%), Gaps = 43/429 (10%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           SR    +++   L  +AT   L    + HS I++LG   +   S KLI  YA    PT S
Sbjct: 11  SRQTLFSSISRALASAATTTQLH---KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSS 67

Query: 75  QLVFN-SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
             VF  +    +VYL+NS+I     N   +EAL L+S      + PD +T  ++      
Sbjct: 68  FSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAG 127

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           + D  +   IH   + +GF  D+ + N+L+ MY +     +   +F+EMP R+V SWN  
Sbjct: 128 LLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWN-- 185

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                                           ++I+GY  NG  +EAL ++   +    +
Sbjct: 186 --------------------------------SLISGYNANGYWNEALEIYYRFR-NLGV 212

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
            P+  ++ SVL  C  L  +  G  IHG   +  +  DV + N L+ MY K   L   RR
Sbjct: 213 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 272

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           +F D    +DA++W++++ GY   G   E++ L+ +MV    KPD++TI  +L ACG  G
Sbjct: 273 IF-DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLG 330

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            +  G  +++ +I T   +  T     +++M  + G L  + +    M  + S S W ++
Sbjct: 331 DLEFGKYVHDYMI-TSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSM 388

Query: 434 VSASVMHGN 442
           ++  + +G+
Sbjct: 389 INVYIQNGS 397



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 146/345 (42%), Gaps = 12/345 (3%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L +S     L L K+ H  +  +G  SN  VS  L+  YA CG+   S  VF 
Sbjct: 416 SVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFE 475

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           +++ +D+  +N++I   V +   N  L + S M    V+PD  T+ +I  +   +     
Sbjct: 476 NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 535

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IHG   K+G   DV + N L+ MY KCG       +F  M  ++V +W   IS    
Sbjct: 536 GKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGM 595

Query: 200 SGDFSLVVRSRRVFDQMKRRNV----YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
            G+    VR+   F +M+   +     A+ A+I     +G ++E L  F  M+   +IEP
Sbjct: 596 YGEGKKAVRA---FGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEP 652

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
                  V+   S    L   +    F +   L  D S+  AL+      G  + A RV 
Sbjct: 653 RIEHYACVVDLLSRSALLDKAED---FILSMPLKPDSSIWGALLSACRMSGDTEIAERVS 709

Query: 316 ED-SSFNKDAITWSSIVSG-YGLHGKGHEAVLLYNKMVCLGSKPD 358
           E     N D   +  +VS  Y   GK  +   +   +   G K D
Sbjct: 710 ERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKD 754


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 163/459 (35%), Positives = 258/459 (56%), Gaps = 36/459 (7%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF  +  +D+  +N++I+G  +N  H +AL +   M  +++ PD FTL+++  +  E  +
Sbjct: 152 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 211

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L  G  IHG +I+ G+  DV + +SL+ MY KC +  +   +F  +PQ +  S       
Sbjct: 212 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGIS------- 264

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                      W ++I G VQNG  DE L  F +M L  +I+PN
Sbjct: 265 ---------------------------WNSIIAGCVQNGMFDEGLKFFQQM-LIAKIKPN 296

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            VS  S++P C+ L  L  GKQ+HG+ IR   + +V + +AL+DMY+KCG++  AR +F+
Sbjct: 297 HVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFD 356

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
                 D ++W++++ GY LHG  ++A+ L+ +M   G KP+ +  + VL+AC  +GL++
Sbjct: 357 KMEL-YDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVD 415

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           E  + +NS+   YRI P  E  A V D+LGR G+L+ A +FI  M +EP+ S+W  L++A
Sbjct: 416 EAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAA 475

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N E+ +   K L  ++P+N   YV LSN+Y+++ RW    +LR  M+D+G+KK P
Sbjct: 476 CRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKP 535

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            CSWI I  K H F   DK+HP    I E L  L+  M 
Sbjct: 536 ACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQME 574



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 190/407 (46%), Gaps = 57/407 (14%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M  S   PD     ++ K    +KDL  G  +HG  I++G   D+   N+LM+MY K   
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 172 FSE------C-LNLFDEMPQ-RNVG----------SWNVRISGHASSGDFSLV------- 206
             E      C   +   +P+ R +G            + R++G   +GD + +       
Sbjct: 61  LEEGGVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQV 120

Query: 207 --------------VRS------------RRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                         V S            R+VF+ M +R++ +W  +I+G  QNG  ++A
Sbjct: 121 NTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDA 180

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L++  EM   D + P+  +L SVLP  +  + L  GK+IHG+AIR   + DV + ++LID
Sbjct: 181 LMMVREMGNAD-LRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLID 239

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY+KC  +D + RVF       D I+W+SI++G   +G   E +  + +M+    KP+ +
Sbjct: 240 MYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHV 298

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           +   ++ AC     ++ G +++  +I + R      I + +VDM  + G +  A      
Sbjct: 299 SFSSIMPACAHLTTLHLGKQLHGYIIRS-RFDGNVFIASALVDMYAKCGNIRTARWIFDK 357

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           M +    S W A++    +HG++      +K + ++E   P NYV+ 
Sbjct: 358 MELYDMVS-WTAMIMGYALHGHAYDAISLFKRM-EVEGVKP-NYVAF 401



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 140/320 (43%), Gaps = 38/320 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L + A + +L   K+ H   +  G+ ++ F+ + LI  YA C +   S  VF 
Sbjct: 196 SFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFY 255

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +   D   +NS+I G V+N   +E L+ F  M  + + P+  + ++I      +  L++
Sbjct: 256 MLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHL 315

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG  I+  F  +V +A++L+ MY KCG       +FD+M   ++ SW         
Sbjct: 316 GKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSW--------- 366

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                    TAMI GY  +G   +A+ LF  M+++  ++PN V+
Sbjct: 367 -------------------------TAMIMGYALHGHAYDAISLFKRMEVEG-VKPNYVA 400

Query: 260 LVSVLPTCSSLIGL--SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            ++VL  CS   GL     K  +       +   +    A+ D+  + G L+ A     D
Sbjct: 401 FMAVLTACSH-AGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISD 459

Query: 318 SSFNKDAITWSSIVSGYGLH 337
                    WS++++   +H
Sbjct: 460 MHIEPTGSVWSTLLAACRVH 479


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 176/512 (34%), Positives = 278/512 (54%), Gaps = 37/512 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   +   A    L+  K+ H +++  G   + FVS+ L+  Y  CG    ++ VF 
Sbjct: 399 SVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFE 458

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            IQ K+V  +NS+I GY         +ELF  M    + P   TL++I        +L +
Sbjct: 459 QIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQL 518

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IHG  I+     D+ + +SL+ +Y KCG               N+GS          
Sbjct: 519 GKFIHGYIIRNRVEADIFVNSSLIDLYFKCG---------------NIGS---------- 553

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    +  VF  M + NV +W  MI+GYV+ G   EALV+F +M+ K  ++P+ ++
Sbjct: 554 ---------AENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMR-KAGVKPDAIT 603

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
             SVLP CS L  L  GK+IH F I  +L  +  +  AL+DMY+KCG++D A  +F    
Sbjct: 604 FTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP 663

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D ++W+S+++ YG HG+  EA+ L+ KM    +KPD +T + +LSAC  +GL++EG 
Sbjct: 664 -ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGC 722

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-VEPSPSIWGALVSASV 438
             +N +I  Y  KP  E  +C++D+LGR G+L  A + ++  P +     +   L SA  
Sbjct: 723 YYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACH 782

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           +H   ++ +   + LI+ +P++PS Y+ LSN+YAS ++WD V ++R  +K+ GLKK+PGC
Sbjct: 783 LHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGC 842

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           SWI +  + H F V DK+HP +  IYE +  L
Sbjct: 843 SWIEVGKRIHPFVVEDKSHPQADMIYECMSIL 874



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 209/407 (51%), Gaps = 40/407 (9%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGY 96
           L K  H +I+SLG  +N  +   LI  Y  C     ++LVF +I++  D+ L+N L+   
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272

Query: 97  VKNHGHNEALELFSNM-YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
            KN    E LE+F  + ++  + PD FT  ++ K    +  +  G ++H   IK GF +D
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V++ +S + MY KC  F + + LFDEMP+R+V SWN                        
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWN------------------------ 368

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
               NV      I+ Y Q+G  ++AL LF EM++    +P+ V+L +V+ +C+ L+ L  
Sbjct: 369 ----NV------ISCYYQDGQPEKALELFEEMKVSG-FKPDSVTLTTVISSCARLLDLER 417

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK+IH   +R     D  + +AL+DMY KCG L+ A+ VFE     K+ ++W+S+++GY 
Sbjct: 418 GKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQ-RKNVVSWNSMIAGYS 476

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           L G     + L+ +M   G +P + T+  +L AC RS  +  G  I+  +I   R++   
Sbjct: 477 LKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRN-RVEADI 535

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            + + ++D+  + G +  A +  + MP     S W  ++S  V  G+
Sbjct: 536 FVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVS-WNVMISGYVKVGS 581



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 148/327 (45%), Gaps = 45/327 (13%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+   L   +   +L+L K  H  I+     ++ FV++ LI  Y  CG    ++ VF
Sbjct: 499 TLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVF 558

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            ++   +V  +N +I+GYVK   + EAL +F++M  + V PD  T  ++     ++  L 
Sbjct: 559 QNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLE 618

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  IH   I+    ++ ++  +L+ MY KCG   E L++F+++P+R+  SW   I+ + 
Sbjct: 619 KGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYG 678

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
           S G         + F                         EAL LF +MQ  D  +P+KV
Sbjct: 679 SHG---------QAF-------------------------EALKLFEKMQQSDA-KPDKV 703

Query: 259 SLVSVLPTCSSLIGLSGG-----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           + +++L  CS    +  G     + I  +  +  + H     + LID+  + G L  A  
Sbjct: 704 TFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEH----YSCLIDLLGRVGRLREAYE 759

Query: 314 VFEDS-SFNKDAITWSSIVSGYGLHGK 339
           + + +    +D    S++ S   LH K
Sbjct: 760 ILQRTPDIREDVGLLSTLFSACHLHKK 786



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 140/307 (45%), Gaps = 38/307 (12%)

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G LIH   + +G   ++ L  SL+++Y  C  F                          
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQS------------------------ 248

Query: 199 SSGDFSLVVRSRRVFDQMKRR-NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                     ++ VF  ++   ++  W  ++    +N    E L +F  +     ++P+ 
Sbjct: 249 ----------AKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDA 298

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            +  SVL  CS L  +  GK +H   I+     DV + ++ + MY+KC   + A ++F++
Sbjct: 299 FTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDE 358

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               +D  +W++++S Y   G+  +A+ L+ +M   G KPD +T+  V+S+C R   +  
Sbjct: 359 MP-ERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLER 417

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G EI+  ++ +        + + +VDM G+ G L+ A +  + +  +   S W ++++  
Sbjct: 418 GKEIHMELVRS-GFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVS-WNSMIAGY 475

Query: 438 VMHGNSE 444
            + G+S+
Sbjct: 476 SLKGDSK 482


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 174/502 (34%), Positives = 286/502 (56%), Gaps = 9/502 (1%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
            KQ H Q +  G  S  ++   LI  Y   G    +  VF  +   D+  +N +I GY K
Sbjct: 82  VKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAK 141

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL--SIKIGFVVDV 156
                EA+ LF  M    + PD+FT+  +    G++ ++  G  +HG     K     ++
Sbjct: 142 KGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNL 201

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           IL N+L+ MYVKC K    L  F  + ++++ SWN+ ++G A  G+     ++R  F QM
Sbjct: 202 ILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELE---QARLFFYQM 258

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
             R++ +W +++ GY   GD      L ++M + +++ P+ V+++S++   +    L  G
Sbjct: 259 PCRDIVSWNSLVTGYACRGDFASVKELIVDMVM-EKVIPDTVTMISLVSAATESGALDQG 317

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           +  HG+ IR ++  D  L +ALIDMY KCGS++ A RVF++ +  KD   W+++++G   
Sbjct: 318 RWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEIN-KKDVTVWTTMITGLAF 376

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG G +A+ L+++M      PD +T V VLSAC  SGL+++G+++++S+ + Y I+P  E
Sbjct: 377 HGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTD-YGIEPGVE 434

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
              C+VD+L R+G+L  A D I  MP++PS SIWGA+++A    G+ E+ ++A + L+ L
Sbjct: 435 HYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNL 494

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           +PE    Y  LSN+YA+S RW    ++R  M+ RG+KK+ GCS + + G  H F  ADK 
Sbjct: 495 DPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGVVHNFISADKC 554

Query: 517 HPCSVSIYEMLDDLILIMRGAA 538
           HP  V I  +L+ L   M+  A
Sbjct: 555 HPGWVDISSILNCLKNEMKPGA 576



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 6/218 (2%)

Query: 22  TVQHFLQVSATHRS--LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           TV     VSA   S  L   + +H  ++ +    + F+ + LI  Y  CG   ++  VF 
Sbjct: 298 TVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFK 357

Query: 80  SIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            I  KDV ++ ++I G +  HG+ ++ALELFS M   +VSPDD T  ++         ++
Sbjct: 358 EINKKDVTVWTTMITG-LAFHGYGSKALELFSEM-QEDVSPDDVTFVSVLSACSHSGLVD 415

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISGH 197
            G+ +       G    V     L+ +  + G+ SE  ++ D+MP +   S W   ++  
Sbjct: 416 QGIKVFSSMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNAC 475

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
            + GD  L   + R    +       +T + N Y  +G
Sbjct: 476 QAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAASG 513



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 15/233 (6%)

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+K +L+ +L   + +   S  KQIH  AI   L     L N LI +Y + G +  A +V
Sbjct: 64  PDKQTLLYLLQAVNFI---SQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQV 120

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           FE    + D ++++ ++ GY   G G EA+ L+++MV LG +PD  TI+G+L +CG+ G 
Sbjct: 121 FEKMP-SPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGN 179

Query: 375 INEGLEIYNSVINTYRIKPTTE----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
           +  G  ++  +    R KPT      +   ++DM  +  +++ AL     +  E     W
Sbjct: 180 VKFGKAVHGWM---ERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALK-EKDIVSW 235

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483
             +V+     G  E   L +    Q+   +  ++ SL   YA    + +V EL
Sbjct: 236 NMIVAGCAKVGELEQARLFF---YQMPCRDIVSWNSLVTGYACRGDFASVKEL 285


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 185/547 (33%), Positives = 304/547 (55%), Gaps = 15/547 (2%)

Query: 6   ARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNP--FVSTKLIT 63
           +R+T     SR+Y     +  L+  A   SL + ++ H+ I++ G    P  F+   L+ 
Sbjct: 4   SRHTALSSVSRHY-----RFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQ 58

Query: 64  AYALCGQPTQSQLVFNSI--QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
            YA CG   Q++ VF+ I   HKD   + +L+  +V+++  +EAL +F  M    V PD+
Sbjct: 59  FYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDE 118

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            TL  +      + D+ VG   HG  +K+G        N++M MY K G   E   +F E
Sbjct: 119 VTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYE 178

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           M  ++V SW V + G   S     V   R VFD+M  RN  AWT MI GY+ +G   E+ 
Sbjct: 179 MKGQSVVSWTVILDGVIRSEG---VRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESF 235

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-KELNHDVSLCNALID 300
            L  EM     +E N V+L S+L  CS    L  G+ +H +A++ KE   ++ +  A++D
Sbjct: 236 ALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVD 295

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY+KCG +  A + F+     ++ ++W++++SG  +HG G  A+ ++ +M    +KPD +
Sbjct: 296 MYAKCGRIHIAFKFFKKMP-QRNVVSWNAMLSGLAMHGLGRAALDIFPQMF-KEAKPDDV 353

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T   VLSAC  SGL+++G   + ++ + Y I P  E  AC+VD+LGRAG+L+ A   ++ 
Sbjct: 354 TFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVRE 413

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP+ P+  + G+L+ +  +HG  ++ +   + L+QL+P+N   ++ LSN+YA + + +  
Sbjct: 414 MPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRA 473

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540
             LR ++K RG+KK PG S I + G+ H FS  DK+HP +  +Y MLD++I  +R A  +
Sbjct: 474 NSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYA 533

Query: 541 PHLGKMT 547
           P+    T
Sbjct: 534 PNTALQT 540


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 188/540 (34%), Positives = 292/540 (54%), Gaps = 38/540 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+ + L   A  R ++  K+ HS I+ LG   N  VS  L+  YA CG P  ++ VF
Sbjct: 145 TQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVF 204

Query: 79  N-------------------------------SIQHKDVYLYNSLINGYVKNHGHNEALE 107
           +                                +  +D+  +NS+I+G+ +      AL+
Sbjct: 205 DRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALD 264

Query: 108 LFSNMYYSNV-SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
           +FS M   ++ SPD FTLA++      ++ L +G  IH   +  GF +  I+ N+L+SMY
Sbjct: 265 IFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMY 324

Query: 167 VKCGKFSECLNLFDEMPQRN--VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
            +CG       L ++   ++  +  +   + G+   GD +   +++ +F  +K R+V AW
Sbjct: 325 SRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN---QAKNIFVSLKDRDVVAW 381

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           TAMI GY Q+G   EA+ LF  M +     PN  +L ++L   SSL  LS GKQIHG A+
Sbjct: 382 TAMIVGYEQHGSYGEAINLFRSM-VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAV 440

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           +    + VS+ NALI MY+K G++  A R F+     +D ++W+S++     HG   EA+
Sbjct: 441 KSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEAL 500

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+  M+  G +PD IT VGV SAC  +GL+N+G + ++ + +  +I PT    AC+VD+
Sbjct: 501 ELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDL 560

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
            GRAG L  A +FI+ MP+EP    WG+L+SA  +H N ++  +A + L+ LEPEN   Y
Sbjct: 561 FGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAY 620

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
            +L+NLY++  +W+  A++R  MKD  +KK  G SWI +  K H F V D  HP    IY
Sbjct: 621 SALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIY 680



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 223/476 (46%), Gaps = 47/476 (9%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           +   F    +++AY+  G    +   F+ +  +D   + ++I GY     +++A+ +  +
Sbjct: 77  LRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGD 136

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    + P  FTL  +       + +  G  +H   +K+G   +V ++NSL++MY KCG 
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                 +FD M  R++ SWN  I+ H   G   L +     F+QM  R++  W +MI+G+
Sbjct: 197 PMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQ---FEQMAERDIVTWNSMISGF 253

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            Q G    AL +F +M     + P++ +L SVL  C++L  L  GKQIH   +    +  
Sbjct: 254 NQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDIS 313

Query: 292 VSLCNALIDMYSKCGSLDCARRVFED--------------------------------SS 319
             + NALI MYS+CG ++ ARR+ E                                 S 
Sbjct: 314 GIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSL 373

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            ++D + W++++ GY  HG   EA+ L+  MV  G +P+  T+  +LS       ++ G 
Sbjct: 374 KDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGK 433

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQL---DRALDFIKTMPVEPSPSIWGALVSA 436
           +I+ S + +  I   + +   ++ M  +AG +    RA D I+    E     W +++ A
Sbjct: 434 QIHGSAVKSGEIYSVS-VSNALITMYAKAGNITSASRAFDLIR---CERDTVSWTSMIIA 489

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT---MMKD 489
              HG++E     +++++ +E   P ++++   ++++      V + R    MMKD
Sbjct: 490 LAQHGHAEEALELFETML-MEGLRP-DHITYVGVFSACTHAGLVNQGRQYFDMMKD 543



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 158/310 (50%), Gaps = 38/310 (12%)

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           L+H   IK G +  V L N+LM++Y K G       LFDEMP R   SWN  +S ++  G
Sbjct: 35  LVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRG 94

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D      +   FDQ+ +R+  +WT MI GY   G   +A+ +  +M +K+ IEP + +L 
Sbjct: 95  DMD---STCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDM-VKEGIEPTQFTLT 150

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---- 317
           +VL + ++   +  GK++H F ++  L  +VS+ N+L++MY+KCG    A+ VF+     
Sbjct: 151 NVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVR 210

Query: 318 --SSFN------------------------KDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
             SS+N                        +D +TW+S++SG+   G    A+ +++KM+
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKML 270

Query: 352 --CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
              L S PD  T+  VLSAC     +  G +I++ ++ T     +  +   ++ M  R G
Sbjct: 271 RDSLLS-PDRFTLASVLSACANLEKLCIGKQIHSHIVTT-GFDISGIVLNALISMYSRCG 328

Query: 410 QLDRALDFIK 419
            ++ A   I+
Sbjct: 329 GVETARRLIE 338


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 178/545 (32%), Positives = 297/545 (54%), Gaps = 39/545 (7%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI--TAYALCGQPTQSQLVFNSIQ 82
           H L + +  +SL+  KQ  + I      S P VS KL+   A  L      ++ +F  I+
Sbjct: 7   HCLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIR 66

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGM 141
           + DV++YN+LI G   +   + AL+LF  M   +V+ PD F+ A + K +   + L  G+
Sbjct: 67  NPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGL 126

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM------------------- 182
            +H L++  G    + +  +L+SMY +C        +FDEM                   
Sbjct: 127 QLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCE 186

Query: 183 ------------PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
                       P RN+ SWN+ ++G+  +G+  L   +R VF +M  ++  +W+ MI G
Sbjct: 187 GVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQL---AREVFMKMPLKDDVSWSTMIVG 243

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           +  NG+ ++A   F E++ ++ + PN+VSL  VL  C+       G+ +HGF  +     
Sbjct: 244 FAHNGNFNDAFAFFREVR-REGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQ 302

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
            +S+ NALID YSKCG+LD AR VF D+   + A++W+++++G  +HG G EA+ L+N+M
Sbjct: 303 IISVNNALIDTYSKCGNLDMARLVF-DNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEM 361

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
                KPD IT + +L AC  +GL++ G   ++ ++NTY I+P  E   C+VD+ GRAG+
Sbjct: 362 EESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGK 421

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           L +A DF+  MP+ P+  +W  L+ A  +HGN  +     + L +L+PEN  ++V LSN+
Sbjct: 422 LQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNI 481

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YA + +W  VA LR  M  + LKK+PG S I ++   + F   +K +  +V  ++ L ++
Sbjct: 482 YAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREI 541

Query: 531 ILIMR 535
           +  +R
Sbjct: 542 MSRLR 546


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 192/574 (33%), Positives = 296/574 (51%), Gaps = 69/574 (12%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  K  HS+IL+ GH S+  V T L+  YA CG     + VF  + ++D+  +N++I 
Sbjct: 242 ALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 301

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G  +     EA E+++ M    V P+  T   +         L+ G  IH    K GF  
Sbjct: 302 GLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTS 361

Query: 155 DVILANSLMSMYVKCGKF-------------------------------SECLNLFDEMP 183
           D+ + N+L+SMY +CG                                 +E L ++ EM 
Sbjct: 362 DIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQ 421

Query: 184 QRNVG-------------------SWNVRI------SGHASSGD--------FSL---VV 207
           Q  V                     W  RI      +G A+           +S+   V 
Sbjct: 422 QAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVK 481

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            +R+VFD+M +R++ A+ AMI GY  +    EAL LF  +Q ++ ++P+KV+ +++L  C
Sbjct: 482 DARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ-EEGLKPDKVTYINMLNAC 540

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           ++   L   ++IH    +     D S+ NAL+  Y+KCGS   A  VFE  +  ++ I+W
Sbjct: 541 ANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMT-KRNVISW 599

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++I+ G   HG+G +A+ L+ +M   G KPDI+T V +LSAC  +GL+ EG   + S+  
Sbjct: 600 NAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQ 659

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            + I PT E   C+VD+LGRAGQLD A   IKTMP + +  IWGAL+ A  +HGN  + +
Sbjct: 660 DFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAE 719

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A +S ++L+ +N   YV+LS++YA++  WD+ A+LR +M+ RG+ K PG SWI +  K 
Sbjct: 720 RAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKL 779

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           H F   D++HP S  IY  LD L   M+     P
Sbjct: 780 HYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVP 813



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 216/496 (43%), Gaps = 43/496 (8%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+  FL    +  +L+  ++ H Q +  G + +  V+  ++  YA CG   +++ VF+ +
Sbjct: 128 TIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKM 187

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + K V  +   I GY        A E+F  M    V P+  T  ++         L  G 
Sbjct: 188 EKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGK 247

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   +  G   D  +  +L+ MY KCG + +C  +F+++  R++ +WN  I G A  G
Sbjct: 248 AVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGG 307

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
            +     +  V++QM+R  V                                 PNK++ V
Sbjct: 308 YWE---EASEVYNQMQREGVM--------------------------------PNKITYV 332

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
            +L  C +   L  GK+IH    +     D+ + NALI MYS+CGS+  AR VF D    
Sbjct: 333 ILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVF-DKMVR 391

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD I+W++++ G    G G EA+ +Y +M   G +P+ +T   +L+AC     +  G  I
Sbjct: 392 KDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRI 451

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  V+    +     +   +V+M    G +  A      M ++     + A++     H 
Sbjct: 452 HQQVVEA-GLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAH- 508

Query: 442 NSEMQDLAYKSLIQLEPENPSN--YVSLSNLYASSRRWDAVAELRTMMKDRGL--KKSPG 497
           N   + L     +Q E   P    Y+++ N  A+S   +   E+ T+++  G     S G
Sbjct: 509 NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVG 568

Query: 498 CSWISIHGKTHCFSVA 513
            + +S + K   FS A
Sbjct: 569 NALVSTYAKCGSFSDA 584



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 205/446 (45%), Gaps = 47/446 (10%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNS 91
           + L   +Q H  I+    + + +    LI  Y  CG   +++ V+  + +  + V+ +N+
Sbjct: 37  KDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNA 96

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           ++ GY++     +AL+L   M    ++PD  T+ +          L  G  IH  +++ G
Sbjct: 97  MVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAG 156

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
            + DV +AN +++MY KCG   E   +FD+M +++V SW + I G+A  G      RS  
Sbjct: 157 LLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCG------RSET 210

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
            F+                            +F +M+ ++ + PN+++ +SVL   SS  
Sbjct: 211 AFE----------------------------IFQKME-QEGVVPNRITYISVLNAFSSPA 241

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  GK +H   +      D ++  AL+ MY+KCGS    R+VFE    N+D I W++++
Sbjct: 242 ALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFE-KLVNRDLIAWNTMI 300

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            G    G   EA  +YN+M   G  P+ IT V +L+AC  S  ++ G EI++ V    + 
Sbjct: 301 GGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVA---KA 357

Query: 392 KPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
             T++I     ++ M  R G +  A      M V      W A++      G        
Sbjct: 358 GFTSDIGVQNALISMYSRCGSIKDARLVFDKM-VRKDVISWTAMIGGLAKSGFGAEALTV 416

Query: 450 YKSLIQ--LEPENPSNYVSLSNLYAS 473
           Y+ + Q  +EP N   Y S+ N  +S
Sbjct: 417 YQEMQQAGVEP-NRVTYTSILNACSS 441



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 144/322 (44%), Gaps = 44/322 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L   ++  +L+  ++ H Q++  G  ++  V   L+  Y++CG    ++ VF+ +
Sbjct: 431 TYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM 490

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D+  YN++I GY  ++   EAL+LF  +    + PD  T   +         L    
Sbjct: 491 IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAR 550

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH L  K GF  D  + N+L+S Y KCG FS+   +F++M +RNV SWN          
Sbjct: 551 EIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWN---------- 600

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   A+I G  Q+G   +AL LF  M+++  ++P+ V+ V
Sbjct: 601 ------------------------AIIGGSAQHGRGQDALQLFERMKMEG-VKPDIVTFV 635

Query: 262 SVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           S+L  CS    L  G++        FAI   + H       ++D+  + G LD A  + +
Sbjct: 636 SLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEH----YGCMVDLLGRAGQLDEAEALIK 691

Query: 317 DSSFNKDAITWSSIVSGYGLHG 338
              F  +   W +++    +HG
Sbjct: 692 TMPFQANTRIWGALLGACRIHG 713



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 168/386 (43%), Gaps = 43/386 (11%)

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP--QRNVGSW 190
           E+KDL  G  +H   I+   V D    N+L++MY++CG   E   ++ ++   +R V SW
Sbjct: 35  EVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSW 94

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           N                                  AM+ GY+Q G +++AL L  +MQ +
Sbjct: 95  N----------------------------------AMVVGYIQYGYIEKALKLLRQMQ-Q 119

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             + P++ +++S L +C S   L  G++IH  A++  L  DV + N +++MY+KCGS++ 
Sbjct: 120 HGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEE 179

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR VF D    K  ++W+  + GY   G+   A  ++ KM   G  P+ IT + VL+A  
Sbjct: 180 AREVF-DKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFS 238

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
               +  G  +++ ++N    +  T +   +V M  + G         + + V      W
Sbjct: 239 SPAALKWGKAVHSRILNAGH-ESDTAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAW 296

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSN--YVSLSNLYASSRRWDAVAELRTMMK 488
             ++      G  E     Y  + Q E   P+   YV L N   +S       E+ + + 
Sbjct: 297 NTMIGGLAEGGYWEEASEVYNQM-QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVA 355

Query: 489 DRGLKKSPGCSWISIHGKTHCFSVAD 514
             G     G     I   + C S+ D
Sbjct: 356 KAGFTSDIGVQNALISMYSRCGSIKD 381



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 136/289 (47%), Gaps = 19/289 (6%)

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           ++G +D  +V +L+ Q     + N    + +L  C  +  L  G+Q+H   I+     D 
Sbjct: 4   KDGAVD--VVQYLQQQ---GAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQ 58

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI-TWSSIVSGYGLHGKGHEAVLLYNKMV 351
              NALI+MY +CGS++ AR+V++  S+ +  + +W+++V GY  +G   +A+ L  +M 
Sbjct: 59  YTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQ 118

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G  PD  TI+  LS+C   G +  G EI+   +    +    ++  C+++M  + G +
Sbjct: 119 QHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQA-GLLFDVKVANCILNMYAKCGSI 177

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE----NPSNYVSL 467
           + A +    M  +   S W   +      G SE    A++   ++E E    N   Y+S+
Sbjct: 178 EEAREVFDKMEKKSVVS-WTITIGGYADCGRSET---AFEIFQKMEQEGVVPNRITYISV 233

Query: 468 SNLYAS--SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
            N ++S  + +W      R +        + G + + ++ K  C S  D
Sbjct: 234 LNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAK--CGSYKD 280


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 275/492 (55%), Gaps = 19/492 (3%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T +I  Y   G+   ++   + +  K V  +N++I+GYV +    EALE+F  MY   + 
Sbjct: 229 TTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQ 288

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-------VDVILA--NSLMSMYVKC 169
            D+FT  ++          N G  +HG  +    +       +D  L+  N+L ++Y KC
Sbjct: 289 WDEFTYTSVLSACA-----NAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKC 343

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           GK  E   +F++MP +++ SWN  +SG+ ++G    +  ++  F++M  RN+  WT MI+
Sbjct: 344 GKVDEARQVFNQMPVKDLVSWNAILSGYVNAGR---IDEAKSFFEEMPERNLLTWTVMIS 400

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           G  QNG  +E+L LF  M+  +  EP   +    +  C+ L  L  G+Q+H   +R   +
Sbjct: 401 GLAQNGFGEESLKLFNRMK-SEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFD 459

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
             +S  NALI MY+KCG ++ A  +F    +  D+++W+++++  G HG G +A+ L+  
Sbjct: 460 SSLSAGNALITMYAKCGVVEAAHCLFLTMPY-LDSVSWNAMIAALGQHGHGAQALELFEL 518

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M+     PD IT + VLS C  +GL+ EG   + S+   Y I P  +  A ++D+L RAG
Sbjct: 519 MLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAG 578

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
           +   A D I+TMPVEP P IW AL++   +HGN ++   A + L +L P++   YV LSN
Sbjct: 579 KFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSN 638

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
           +YA+  RWD VA++R +M+D+G+KK PGCSWI +  K H F V D  HP   ++Y  L++
Sbjct: 639 MYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEE 698

Query: 530 LILIMRGAAASP 541
           L L MR     P
Sbjct: 699 LGLKMRKLGYIP 710



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 203/456 (44%), Gaps = 104/456 (22%)

Query: 59  TKLITAYALCGQPTQSQLVF--NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           T LI A++  G    ++ +F    +  +D   YN++I GY  N+    A+ELF ++  + 
Sbjct: 85  TTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNG 144

Query: 117 VSPDDFTLATI-SKLSGEIKDLNVGMLIHGLSIKIG--FVVDVILANSLMSMYVKCGKFS 173
             PD+FT  ++   L+  ++D      IH   +K G  FV  V+  N+L+S++VKC    
Sbjct: 145 FRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVL--NALLSVFVKC---- 198

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
                                +        SL+  +R++FD+M  R+  +WT MI GYV+
Sbjct: 199 ---------------------ASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVR 237

Query: 234 NGDLD-------------------------------EALVLFLEMQLKDRIEPNKVSLVS 262
           NG+LD                               EAL +F +M L   I+ ++ +  S
Sbjct: 238 NGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLG-IQWDEFTYTS 296

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKE----LNHDVSLCNALIDMYSKCGSLDCARRVF--- 315
           VL  C++      GKQ+H + +R E    L+  +S+ NAL  +Y KCG +D AR+VF   
Sbjct: 297 VLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQM 356

Query: 316 ----------------------EDSSF-----NKDAITWSSIVSGYGLHGKGHEAVLLYN 348
                                 E  SF      ++ +TW+ ++SG   +G G E++ L+N
Sbjct: 357 PVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFN 416

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLG 406
           +M   G +P      G + AC     +  G +++  ++   R+   + + A   ++ M  
Sbjct: 417 RMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLV---RLGFDSSLSAGNALITMYA 473

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           + G ++ A     TMP   S S W A+++A   HG+
Sbjct: 474 KCGVVEAAHCLFLTMPYLDSVS-WNAMIAALGQHGH 508



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 182/427 (42%), Gaps = 69/427 (16%)

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
           ++   +H   I  GF     + N L+ +Y K        +LFDE+ Q ++ +    I+ H
Sbjct: 32  SIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAH 91

Query: 198 ASSGDFSLVVRSRRVF--DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
           +S+G+ +L   +R +F    +  R+   + AMI GY  N D   A+ LF ++ L++   P
Sbjct: 92  SSAGNSNL---AREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDL-LRNGFRP 147

Query: 256 NKVSLVSVLPTCSSLI-GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC--------- 305
           +  +  SVL   + ++      +QIH   ++       S+ NAL+ ++ KC         
Sbjct: 148 DNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSS 207

Query: 306 -------------------------------GSLDCARRVFEDSSFNKDAITWSSIVSGY 334
                                          G LD AR+ F D    K  + W++++SGY
Sbjct: 208 SLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQ-FLDGMTEKLVVAWNAMISGY 266

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG   EA+ ++ KM  LG + D  T   VLSAC  +G    G +++  ++ T   +P+
Sbjct: 267 VHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRT-EPRPS 325

Query: 395 TEICACVVDMLG----RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
            +    V + L     + G++D A      MPV+   S W A++S  V  G  +      
Sbjct: 326 LDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVS-WNAILSGYVNAGRID----EA 380

Query: 451 KSLIQLEPE-NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP--------GCSWI 501
           KS  +  PE N   +  + +  A +   +   +L   MK  G +            C+W+
Sbjct: 381 KSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWL 440

Query: 502 S--IHGK 506
           +  +HG+
Sbjct: 441 AALMHGR 447



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 135/355 (38%), Gaps = 83/355 (23%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           A    FL     H  +  T+   S   SL       V+  L T Y  CG+  +++ VFN 
Sbjct: 302 ANAGFFLHGKQVHAYILRTEPRPSLDFSLS------VNNALATLYWKCGKVDEARQVFNQ 355

Query: 81  IQHKDVYLYNSLINGYV-------------------------------KNHGHNEALELF 109
           +  KD+  +N++++GYV                               +N    E+L+LF
Sbjct: 356 MPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLF 415

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
           + M      P D+  A        +  L  G  +H   +++GF   +   N+L++MY KC
Sbjct: 416 NRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKC 475

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           G       LF  MP  +  SWN                                  AMI 
Sbjct: 476 GVVEAAHCLFLTMPYLDSVSWN----------------------------------AMIA 501

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
              Q+G   +AL LF E+ LK+ I P++++ ++VL TCS       G    G    K ++
Sbjct: 502 ALGQHGHGAQALELF-ELMLKEDILPDRITFLTVLSTCS-----HAGLVEEGHRYFKSMS 555

Query: 290 HDVSLCNA------LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
               +C        +ID+  + G    A+ + E          W ++++G  +HG
Sbjct: 556 GLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHG 610



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 6/204 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H+Q++ LG  S+      LIT YA CG    +  +F ++ + D   +N++I   +  
Sbjct: 447 RQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAA-LGQ 505

Query: 100 HGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG-MLIHGLSIKIGFVVDVI 157
           HGH  +ALELF  M   ++ PD  T  T+         +  G      +S   G      
Sbjct: 506 HGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGED 565

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVR-SRRVFDQ 215
               ++ +  + GKFSE  ++ + MP +     W   ++G    G+  L ++ + R+F+ 
Sbjct: 566 HYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFEL 625

Query: 216 MKRRNVYAWTAMINGYVQNGDLDE 239
           M + +   +  + N Y   G  D+
Sbjct: 626 MPQHDG-TYVLLSNMYATVGRWDD 648


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 177/482 (36%), Positives = 274/482 (56%), Gaps = 13/482 (2%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++ AY   G+   +  +FN +  +D   +N L+   V++   ++A +LF  M   NV   
Sbjct: 135 MLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAW 194

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
              +A I++ SG + +     L  G+  +     +V+  N+++S Y +     E  +LF 
Sbjct: 195 TTMVAGIAR-SGSVNEARA--LFDGMPER-----NVVSWNAMISGYARNHMIDEAHDLFM 246

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           +MP R++ SWN+ I+G   + +     R++ +FD+M RRNV  WT M+NGY+Q+   + A
Sbjct: 247 KMPTRDIASWNIMITGFIQNKNLE---RAQELFDKMPRRNVVTWTTMMNGYLQSIQSETA 303

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF  M L D I PN+V+ +  +  CS+L GLS G+Q+H    +     D  + + L++
Sbjct: 304 LQLFNGM-LIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMN 362

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           +Y+KCG +  AR+VF + S  KD I+W+ +++ Y  HG G EA+ LY KM   G KP+ +
Sbjct: 363 LYAKCGEIILARKVF-NLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDV 421

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T VG+LSAC  SGL++EGL I+  ++    I    E   C++D+  RAG+L  A   I  
Sbjct: 422 TYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHF 481

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           + VEPS ++W AL+     HGN  + DLA ++L++ EP N   Y  L N+YAS+ +W   
Sbjct: 482 LKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEA 541

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540
           A++R+ M DRGLKK PGCSWI +  K H F   DK+H  S  I  +L D+  IMR A   
Sbjct: 542 AKIRSEMNDRGLKKQPGCSWIEVANKVHVFVSRDKSHSESDLINSLLQDIHDIMRMADTV 601

Query: 541 PH 542
           P 
Sbjct: 602 PR 603



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 186/442 (42%), Gaps = 99/442 (22%)

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           H+ +P    + +   A  G+ + ++ +F+    +DV  + +L+  Y      ++A  LF 
Sbjct: 34  HVQDP---NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFD 90

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
                   PD                                  +V+   +L+S Y + G
Sbjct: 91  R-------PDARR-------------------------------NVVTWTALLSGYARAG 112

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGD----------------------FSLVVR 208
           +  E   LF  MP+RNV SWN  +  + SSG                        + +VR
Sbjct: 113 RVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVR 172

Query: 209 S------RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
           S      R++FD+M  RNV AWT M+ G  ++G ++EA  LF  M  ++ +  N +    
Sbjct: 173 SGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAM---- 228

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKEL-----NHDVSLCNALIDMYSKCGSLDCARRVFED 317
                     +SG  + H      +L       D++  N +I  + +  +L+ A+ +F D
Sbjct: 229 ----------ISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELF-D 277

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               ++ +TW+++++GY    +   A+ L+N M+  G +P+ +T +G + AC     ++E
Sbjct: 278 KMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSE 337

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G +++  +  T   +  T I + ++++  + G++  A   +  +  E     W  +++A 
Sbjct: 338 GQQVHQMICKT-PFQFDTFIESTLMNLYAKCGEIILARK-VFNLSKEKDVISWNGMIAAY 395

Query: 438 VMHG--------NSEMQDLAYK 451
             HG          +MQ+  YK
Sbjct: 396 AHHGVGLEAIHLYEKMQENGYK 417



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 112/270 (41%), Gaps = 30/270 (11%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H  I       + F+ + L+  YA CG+   ++ VFN  + KDV  +N +I  Y  +
Sbjct: 339 QQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHH 398

Query: 100 HGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
               EA+ L+  M  +   P+D T +  +S  S      + G++  GL I    V D  +
Sbjct: 399 GVGLEAIHLYEKMQENGYKPNDVTYVGLLSACS------HSGLVDEGLRIFEYMVKDRSI 452

Query: 159 A------NSLMSMYVKCGKFSECLNLFDEM---PQRNVGSWNVRISGHASSGDFSLVVRS 209
           A        L+ +  + G+  +   L   +   P   V  WN  + G  S G+ S+   +
Sbjct: 453 AVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTV--WNALLGGCNSHGNESIGDLA 510

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
            R   + +  N   +T + N Y   G   EA  +  EM   DR    +       P CS 
Sbjct: 511 ARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMN--DRGLKKQ-------PGCS- 560

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
              +    ++H F  R + + +  L N+L+
Sbjct: 561 --WIEVANKVHVFVSRDKSHSESDLINSLL 588


>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 177/508 (34%), Positives = 289/508 (56%), Gaps = 22/508 (4%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYL 88
           R +K  K++H+Q+L+ G  ++ F  ++L+   A C  P    L     +F  IQH  + +
Sbjct: 16  RHMKQLKEAHAQVLTCGLGTDSFALSRLL---AFCSHPLHGSLPHAWKLFQQIQHPTICI 72

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
            N++I  +V        ++++S M  + + PD++TL  + K    ++  ++G   HG S+
Sbjct: 73  CNTMIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSV 132

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K+GF  D+ + N+L++MY   G       +FDEMP     SW V ISG+A  GD   V  
Sbjct: 133 KLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGD---VET 189

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           +R +FD+   ++   W ++I+GYVQN    E L +F  MQ    +EP++  LVS+L  C+
Sbjct: 190 ARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQ-STGLEPDEAILVSILCACA 248

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVS--LCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
            L  +  G  +H +    +L H +S  L   LIDMY+KCGSLD A+++F+  S  +D I 
Sbjct: 249 HLGAMEIGVWVHRYL--DQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMS-QRDTIC 305

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++SG  ++G G  A+ L+++M   G KPD IT + + +AC  SG+ +E + + NS+ 
Sbjct: 306 WNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMC 365

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS----IWGALVSASVMHGN 442
             Y ++P +E   C+VD+LGRAG L  A + I  MP   SP+     W AL+SA   HG 
Sbjct: 366 TVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQ 425

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
           +E+ + A + L  LE  +   YV LSNLYA++ + D V  +R MM++RG+ K+PGCS + 
Sbjct: 426 TEVAEDAAQRLFHLE-HHSGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSVK 484

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           I+G  H F   ++ H     ++ +L+ +
Sbjct: 485 INGVVHEFIAGEETHLQMEEVHRVLEKM 512


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 175/520 (33%), Positives = 277/520 (53%), Gaps = 37/520 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L   ++  +LK  +Q    I+  G+ S+  V T L++ YA CG    +  VF  I
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             ++V  +N++I  YV++  ++ AL  F  +    + P+  T  +I  +      L +G 
Sbjct: 475 SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGK 534

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H L +K G   D+ ++N+L+SM+V CG      NLF++MP                  
Sbjct: 535 WVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP------------------ 576

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                           +R++ +W  +I G+VQ+G    A   F  MQ +  I+P+K++  
Sbjct: 577 ----------------KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQ-ESGIKPDKITFT 619

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
            +L  C+S   L+ G+++H        + DV +   LI MY+KCGS++ A +VF      
Sbjct: 620 GLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-K 678

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K+  +W+S+++GY  HG+G EA+ L+ +M   G KPD IT VG LSAC  +GLI EGL  
Sbjct: 679 KNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHH 738

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + S +  + I+P  E   C+VD+ GRAG L+ A++FI  M VEP   +WGAL+ A  +H 
Sbjct: 739 FQS-MKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHL 797

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ + A +  ++L+P +   +V LSN+YA++  W  VA++R +M DRG+ K PG SWI
Sbjct: 798 NVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWI 857

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            + GK H F   DK HP +  I+  L+ L + MR     P
Sbjct: 858 EVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVP 897



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 228/455 (50%), Gaps = 41/455 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    LQ+    ++L   ++ ++ I   G   + F+   LI  YA CG    ++ +F+ +
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KDVY +N L+ GYV++  + EA +L   M   +V PD  T  ++     + ++++ G 
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            ++ L +K G+  D+ +  +L++M++KCG                              G
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDI----------------------------G 263

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D      + +VFD +  R++  WT+MI G  ++G   +A  LF  M+ ++ ++P+KV+ V
Sbjct: 264 D------ATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME-EEGVQPDKVAFV 316

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C+    L  GK++H        + ++ +  A++ MY+KCGS++ A  VF D    
Sbjct: 317 SLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF-DLVKG 375

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           ++ ++W+++++G+  HG+  EA L +NKM+  G +P+ +T + +L AC     +  G +I
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
            + +I          +   ++ M  + G L  A    + +  + +   W A+++A V H 
Sbjct: 436 QDHIIEA-GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHE 493

Query: 442 NSEMQDLAYKSLIQ--LEPENPSNYVSLSNLYASS 474
             +     +++L++  ++P N S + S+ N+  SS
Sbjct: 494 QYDNALATFQALLKEGIKP-NSSTFTSILNVCKSS 527



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 216/460 (46%), Gaps = 64/460 (13%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L+ SRN    + Q FL  S+          +H  I +L  ++  F           C  P
Sbjct: 20  LIYSRNSWVFSRQRFLACSSC-------VPTHEGIETLRMLTTSFSGR--------C--P 62

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
               +VF  I  KD    N+++N   K    NEA+++   +  S++     T + + +L 
Sbjct: 63  KGRCVVFADI--KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLC 120

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
            + K+L  G  I+    K G   D+ + N+L++MY KCG                     
Sbjct: 121 IKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGN-------------------- 160

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                          + ++++FD M+ ++VY+W  ++ GYVQ+G  +EA  L  +M ++D
Sbjct: 161 --------------TISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQM-VQD 205

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            ++P+K + VS+L  C+    +  G++++   ++   + D+ +  ALI+M+ KCG +  A
Sbjct: 206 SVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDA 265

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
            +VF D+   +D +TW+S+++G   HG+  +A  L+ +M   G +PD +  V +L AC  
Sbjct: 266 TKVF-DNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH 324

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEIC--ACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
              + +G +++  +     +   TEI     ++ M  + G ++ AL+    +      S 
Sbjct: 325 PEALEQGKKVHARM---KEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS- 380

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQ--LEPENPSNYVSL 467
           W A+++    HG  +   L +  +I+  +EP N   ++S+
Sbjct: 381 WTAMIAGFAQHGRIDEAFLFFNKMIESGIEP-NRVTFMSI 419



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 144/321 (44%), Gaps = 41/321 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+T    L V  +  SL+L K  H  I+  G  S+  VS  L++ +  CG    ++ +FN
Sbjct: 514 SSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFN 573

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            +  +D+  +N++I G+V+ HG N+ A + F  M  S + PD  T   +       + L 
Sbjct: 574 DMPKRDLVSWNTIIAGFVQ-HGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALT 632

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  +H L  +  F  DV++   L+SMY KCG   +   +F ++P++NV SW   I+   
Sbjct: 633 EGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIT--- 689

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                          GY Q+G   EAL LF +MQ ++ ++P+ +
Sbjct: 690 -------------------------------GYAQHGRGKEALELFYQMQ-QEGVKPDWI 717

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL--CNALIDMYSKCGSLDCARRVFE 316
           + V  L  C+    +  G  +H F   KE N +  +     ++D++ + G L+ A     
Sbjct: 718 TFVGALSACAHAGLIEEG--LHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFII 775

Query: 317 DSSFNKDAITWSSIVSGYGLH 337
                 D+  W +++    +H
Sbjct: 776 KMQVEPDSRVWGALLGACQVH 796


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 191/584 (32%), Positives = 304/584 (52%), Gaps = 73/584 (12%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V+SR      +Q   + +    +L   KQ H+QI+      +  ++ KLI+A +LC Q  
Sbjct: 13  VSSRRIFEERLQDLPKCA----NLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTN 68

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            +  VFN +Q  +V+L NSLI  + +N    +A  +FS M    +  D+FT   + K   
Sbjct: 69  LAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACS 128

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG------------KFSE------ 174
               L V  ++H    K+G   D+ + N+L+  Y +CG            K SE      
Sbjct: 129 GQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSW 188

Query: 175 ---------------CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
                             LFDEMPQR++ SWN  + G+A   + S   ++  +F++M  R
Sbjct: 189 NSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMS---KAFELFEKMPER 245

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLK-----------------------DRIEPN 256
           N  +W+ M+ GY + GD++ A V+F +M L                        DR+   
Sbjct: 246 NTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQ 305

Query: 257 KVS---------LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
            V+         ++S+L  C+    LS G +IH    R  L  +  + NAL+DMY+KCG+
Sbjct: 306 MVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGN 365

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           L  A  VF D    KD ++W++++ G G+HG G EA+ L+++M   G +PD +T + VL 
Sbjct: 366 LKKAFDVFNDIP-KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLC 424

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           +C  +GLI+EG++ + S+   Y + P  E   C+VD+LGR G+L  A+  ++TMP+EP+ 
Sbjct: 425 SCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNV 484

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
            IWGAL+ A  MH   ++      +L++L+P +P NY  LSN+YA++  W+ VA++R+ M
Sbjct: 485 VIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKM 544

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           K  G++K  G S + +    H F+V DK+HP S  IY+ML  LI
Sbjct: 545 KSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLI 588


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/520 (33%), Positives = 277/520 (53%), Gaps = 37/520 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L   ++  +LK  +Q    I+  G+ S+  V T L++ YA CG    +  VF  I
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             ++V  +N++I  YV++  ++ AL  F  +    + P+  T  +I  +      L +G 
Sbjct: 475 SKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGK 534

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H L +K G   D+ ++N+L+SM+V CG      NLF++MP                  
Sbjct: 535 WVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP------------------ 576

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                           +R++ +W  +I G+VQ+G    A   F  MQ +  I+P+K++  
Sbjct: 577 ----------------KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQ-ESGIKPDKITFT 619

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
            +L  C+S   L+ G+++H        + DV +   LI MY+KCGS++ A +VF      
Sbjct: 620 GLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-K 678

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K+  +W+S+++GY  HG+G EA+ L+ +M   G KPD IT VG LSAC  +GLI EGL  
Sbjct: 679 KNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHH 738

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + S +  + I+P  E   C+VD+ GRAG L+ A++FI  M VEP   +WGAL+ A  +H 
Sbjct: 739 FQS-MKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHL 797

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ + A +  ++L+P +   +V LSN+YA++  W  VA++R +M DRG+ K PG SWI
Sbjct: 798 NVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWI 857

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            + GK H F   DK HP +  I+  L+ L + MR     P
Sbjct: 858 EVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVP 897



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 228/455 (50%), Gaps = 41/455 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    LQ+    ++L   ++ ++ I   G   + F+   LI  YA CG    ++ +F+ +
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KDVY +N L+ GYV++  + EA +L   M   +V PD  T  ++     + ++++ G 
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            ++ L +K G+  D+ +  +L++M++KCG                              G
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDI----------------------------G 263

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D      + +VFD +  R++  WT+MI G  ++G   +A  LF  M+ ++ ++P+KV+ V
Sbjct: 264 D------ATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME-EEGVQPDKVAFV 316

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C+    L  GK++H        + ++ +  A++ MY+KCGS++ A  VF D    
Sbjct: 317 SLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF-DLVKG 375

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           ++ ++W+++++G+  HG+  EA L +NKM+  G +P+ +T + +L AC     +  G +I
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
            + +I          +   ++ M  + G L  A    + +  + +   W A+++A V H 
Sbjct: 436 QDHIIEA-GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHE 493

Query: 442 NSEMQDLAYKSLIQ--LEPENPSNYVSLSNLYASS 474
             +     +++L++  ++P N S + S+ N+  SS
Sbjct: 494 QYDNALATFQALLKEGIKP-NSSTFTSILNVCKSS 527



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 144/321 (44%), Gaps = 41/321 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+T    L V  +  SL+L K  H  I+  G  S+  VS  L++ +  CG    ++ +FN
Sbjct: 514 SSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFN 573

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            +  +D+  +N++I G+V+ HG N+ A + F  M  S + PD  T   +       + L 
Sbjct: 574 DMPKRDLVSWNTIIAGFVQ-HGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALT 632

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  +H L  +  F  DV++   L+SMY KCG   +   +F ++P++NV SW   I+   
Sbjct: 633 EGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIA--- 689

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                          GY Q+G   EAL LF +MQ ++ ++P+ +
Sbjct: 690 -------------------------------GYAQHGRGKEALELFYQMQ-QEGVKPDWI 717

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL--CNALIDMYSKCGSLDCARRVFE 316
           + V  L  C+    +  G  +H F   KE N +  +     ++D++ + G L+ A     
Sbjct: 718 TFVGALSACAHAGLIEEG--LHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFII 775

Query: 317 DSSFNKDAITWSSIVSGYGLH 337
                 D+  W +++    +H
Sbjct: 776 KMQVEPDSRVWGALLGACQVH 796



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 110/221 (49%), Gaps = 14/221 (6%)

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV-----SVLPTCSSLIGLSGGKQIH 280
           A++N   + G  +EA      MQ+ +R++ + + +      ++L  C     L  G++I+
Sbjct: 80  AVLNRLSKAGQFNEA------MQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
               +  +  D+ + N LI+MY+KCG+   A+++F+D    KD  +W+ ++ GY  HG  
Sbjct: 134 NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMR-EKDVYSWNLLLGGYVQHGLY 192

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            EA  L+ +MV    KPD  T V +L+AC  +  +++G E+YN ++          +   
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKA-GWDTDLFVGTA 251

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +++M  + G +  A      +P     + W ++++    HG
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVT-WTSMITGLARHG 291


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/514 (34%), Positives = 274/514 (53%), Gaps = 36/514 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+ S     + + +Q H  IL  G  SN FV + L+ +YA  G   ++Q  F+ +
Sbjct: 180 TLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV 239

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D+ L+N +++ Y  N    +A  +F  M    V  D+FT  ++    G +    +G 
Sbjct: 240 SSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGK 299

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HGL I++ F +DV++A++L+ MY K                 N+              
Sbjct: 300 QVHGLIIRLSFDLDVLVASALVDMYSK---------------NENIED------------ 332

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  +R+ FD M  +N+ +WT MI GY Q+GD  EA+ L  EM ++    P++++L 
Sbjct: 333 -------ARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEM-IRVYTYPDELALA 384

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L +C +L   S   Q+H + +       +S+ NAL+  YSKCGS+  A + F  S   
Sbjct: 385 SILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFS-SVAE 443

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
            D I+W+S++  Y  HG   E V ++ KM+    +PD +  +GVLSAC   G + EGL  
Sbjct: 444 PDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHY 503

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +N +IN Y+I P +E   C++D+LGRAG LD A++ + +MPVEP     GA + A  +H 
Sbjct: 504 FNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAFLGACKVHR 563

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N  +   A + L  +EP  P+NY  +SN+YAS   W  VA +R +M++R   K PGCSW+
Sbjct: 564 NVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWM 623

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            I G+ H F   DK HP +V +Y MLD L+ +M 
Sbjct: 624 EIAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLME 657



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 171/386 (44%), Gaps = 73/386 (18%)

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           K+S ++  L+ G  +H   IK+G    + L N ++ +YVKC +F++   +FDEMP +NV 
Sbjct: 81  KISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVV 140

Query: 189 SWNVRISGHASSG-DFSLVVRSRRVFDQMKRR---------------------------- 219
           SWN  I G       F+LV      F QM                               
Sbjct: 141 SWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQL 200

Query: 220 -----------NVYAWTAMINGYVQNGDLDEALVLFLEMQLKD----------------- 251
                      N +  +A+++ Y + G +DEA   F E+  +D                 
Sbjct: 201 HCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQ 260

Query: 252 ----------RIEPNK---VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
                     R+E  K    +  S++ +C  L     GKQ+HG  IR   + DV + +AL
Sbjct: 261 GKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASAL 320

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           +DMYSK  +++ AR+ F D    K+ ++W++++ GYG HG G EA+ L  +M+ + + PD
Sbjct: 321 VDMYSKNENIEDARKAF-DGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPD 379

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            + +  +LS+CG     +E ++++  V+     +    I   +V    + G +  A    
Sbjct: 380 ELALASILSSCGNLSATSEVVQVHAYVVEN-GFEAFLSIANALVSAYSKCGSIGSAFQSF 438

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSE 444
            ++  EP    W +L+ A   HG S+
Sbjct: 439 SSV-AEPDIISWTSLMGAYAFHGLSK 463


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 176/512 (34%), Positives = 278/512 (54%), Gaps = 37/512 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   +   A    L+  K+ H +++  G   + FVS+ L+  Y  CG    ++ VF 
Sbjct: 207 SVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFE 266

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            IQ K+V  +NS+I GY         +ELF  M    + P   TL++I        +L +
Sbjct: 267 QIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQL 326

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IHG  I+     D+ + +SL+ +Y KCG               N+GS          
Sbjct: 327 GKFIHGYIIRNRVEADIFVNSSLIDLYFKCG---------------NIGS---------- 361

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    +  VF  M + NV +W  MI+GYV+ G   EALV+F +M+ K  ++P+ ++
Sbjct: 362 ---------AENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMR-KAGVKPDAIT 411

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
             SVLP CS L  L  GK+IH F I  +L  +  +  AL+DMY+KCG++D A  +F    
Sbjct: 412 FTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP 471

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D ++W+S+++ YG HG+  EA+ L+ KM    +KPD +T + +LSAC  +GL++EG 
Sbjct: 472 -ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGC 530

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-VEPSPSIWGALVSASV 438
             +N +I  Y  KP  E  +C++D+LGR G+L  A + ++  P +     +   L SA  
Sbjct: 531 YYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACH 590

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           +H   ++ +   + LI+ +P++PS Y+ LSN+YAS ++WD V ++R  +K+ GLKK+PGC
Sbjct: 591 LHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGC 650

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           SWI +  + H F V DK+HP +  IYE +  L
Sbjct: 651 SWIEVGKRIHPFVVEDKSHPQADMIYECMSIL 682



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 213/419 (50%), Gaps = 40/419 (9%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK- 84
            L+     + LK  K  H +I+SLG  +N  +   LI  Y  C     ++LVF +I++  
Sbjct: 9   LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL 68

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNM-YYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           D+ L+N L+    KN    E LE+F  + ++  + PD FT  ++ K    +  +  G ++
Sbjct: 69  DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 128

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H   IK GF +DV++ +S + MY KC  F + + LFDEMP+R+V SWN            
Sbjct: 129 HTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWN------------ 176

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                           NV      I+ Y Q+G  ++AL LF EM++    +P+ V+L +V
Sbjct: 177 ----------------NV------ISCYYQDGQPEKALELFEEMKVSG-FKPDSVTLTTV 213

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           + +C+ L+ L  GK+IH   +R     D  + +AL+DMY KCG L+ A+ VFE     K+
Sbjct: 214 ISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQ-RKN 272

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            ++W+S+++GY L G     + L+ +M   G +P + T+  +L AC RS  +  G  I+ 
Sbjct: 273 VVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHG 332

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            +I   R++    + + ++D+  + G +  A +  + MP     S W  ++S  V  G+
Sbjct: 333 YIIRN-RVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVS-WNVMISGYVKVGS 389



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 147/327 (44%), Gaps = 45/327 (13%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+   L   +   +L+L K  H  I+     ++ FV++ LI  Y  CG    ++ VF
Sbjct: 307 TLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVF 366

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            ++   +V  +N +I+GYVK   + EAL +F++M  + V PD  T  ++     ++  L 
Sbjct: 367 QNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLE 426

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  IH   I+    ++ ++  +L+ MY KCG   E L++F+++P+R+  SW        
Sbjct: 427 KGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWT------- 479

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                      +MI  Y  +G   EAL LF +MQ  D  +P+KV
Sbjct: 480 ---------------------------SMIAAYGSHGQAFEALKLFEKMQQSDA-KPDKV 511

Query: 259 SLVSVLPTCSSLIGLSGG-----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           + +++L  CS    +  G     + I  +  +  + H     + LID+  + G L  A  
Sbjct: 512 TFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEH----YSCLIDLLGRVGRLREAYE 567

Query: 314 VFEDS-SFNKDAITWSSIVSGYGLHGK 339
           + + +    +D    S++ S   LH K
Sbjct: 568 ILQRTPDIREDVGLLSTLFSACHLHKK 594



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 147/326 (45%), Gaps = 38/326 (11%)

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D   L ++ K   + K L  G LIH   + +G   ++ L  SL+++Y  C  F       
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQS----- 56

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR-NVYAWTAMINGYVQNGDLD 238
                                        ++ VF  ++   ++  W  ++    +N    
Sbjct: 57  -----------------------------AKLVFQTIENPLDITLWNGLMAACTKNFIFI 87

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           E L +F  +     ++P+  +  SVL  CS L  +  GK +H   I+     DV + ++ 
Sbjct: 88  EGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSA 147

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           + MY+KC   + A ++F++    +D  +W++++S Y   G+  +A+ L+ +M   G KPD
Sbjct: 148 VGMYAKCNVFEDAIKLFDEMP-ERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPD 206

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            +T+  V+S+C R   +  G EI+  ++ +        + + +VDM G+ G L+ A +  
Sbjct: 207 SVTLTTVISSCARLLDLERGKEIHMELVRS-GFALDGFVSSALVDMYGKCGCLEMAKEVF 265

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSE 444
           + +  +   S W ++++   + G+S+
Sbjct: 266 EQIQRKNVVS-WNSMIAGYSLKGDSK 290


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 302/559 (54%), Gaps = 36/559 (6%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           L+ AR  F  +  R+  S T    +   A H  + L +        L    +      ++
Sbjct: 116 LADARGLFDEMPVRD--SVTYNVMISSHANHGLVSLARH----YFDLAPEKDAVSWNGML 169

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
            AY   G+  +++ +FNS    DV  +N+L++GYV+    +EA ELF  M   +V   + 
Sbjct: 170 AAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNI 229

Query: 123 TLATISKL-----------SGEIKDLNV------GMLIHGLSIKIGFVVDVILA------ 159
            ++  ++            +  ++D+        G   +G+  +   V D +        
Sbjct: 230 MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSW 289

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N++++ Y++     E   LF+ MP RNV SWN  ++G+A +G   ++  ++ VFD M ++
Sbjct: 290 NAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAG---MLEEAKAVFDTMPQK 346

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEM-QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           +  +W AM+  Y Q G  +E L LF+EM +  + +  N+ +   VL TC+ +  L  G Q
Sbjct: 347 DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV--NRSAFACVLSTCADIAALECGMQ 404

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HG  IR        + NAL+ MY KCG+++ AR  FE+    +D ++W+++++GY  HG
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
            G EA+ +++ M    +KPD IT+VGVL+AC  SGL+ +G+  + S+ + + +    E  
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY 523

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C++D+LGRAG+L  A D +K MP EP  ++WGAL+ AS +H N E+   A + + +LEP
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEP 583

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
           EN   YV LSN+YASS +W    ++R MM++RG+KK PG SWI +  K H FS  D  HP
Sbjct: 584 ENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHP 643

Query: 519 CSVSIYEMLDDLILIMRGA 537
               IY  L+DL + M+ A
Sbjct: 644 EKEKIYAFLEDLDMRMKKA 662



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 191/407 (46%), Gaps = 44/407 (10%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM-------- 112
           ++  Y+  G+   +  +F +I   D Y YN+L++    +    +A  LF  M        
Sbjct: 75  MLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTY 134

Query: 113 -----------------YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
                            +Y +++P+   ++    L+  +++  V       + +  +  D
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW--D 192

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           VI  N+LMS YV+ GK SE   LFD MP R+V SWN+ +SG+A  GD   +V +RR+FD 
Sbjct: 193 VISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGD---MVEARRLFDA 249

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
              R+V+ WTA+++GY QNG L+EA  +F  M      E N VS  +++        +  
Sbjct: 250 APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-----ERNAVSWNAMVAAYIQRRMMDE 304

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
            K++      +    +V+  N ++  Y++ G L+ A+ VF D+   KDA++W+++++ Y 
Sbjct: 305 AKELFNMMPCR----NVASWNTMLTGYAQAGMLEEAKAVF-DTMPQKDAVSWAAMLAAYS 359

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT-YRIKPT 394
             G   E + L+ +M   G   +      VLS C     +  G++++  +I   Y +   
Sbjct: 360 QGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV--G 417

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             +   ++ M  + G ++ A +  + M  E     W  +++    HG
Sbjct: 418 CFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 30/304 (9%)

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           N  I+ H  +G    V  + R+F  M RR+   + AM+ GY  NG L  A  LF  +   
Sbjct: 42  NKAITAHMRAGR---VADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP 98

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           D    N  +L+  L   SSL    G        +R  + ++V     +I  ++  G +  
Sbjct: 99  DNYSYN--TLLHALAVSSSLADARG--LFDEMPVRDSVTYNV-----MISSHANHGLVSL 149

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR  F D +  KDA++W+ +++ Y  +G+  EA  L+N      ++ D+I+   ++S   
Sbjct: 150 ARHYF-DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDVISWNALMSGYV 204

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
           + G ++E  E+++ +       P  ++ +   +V    R G +  A       PV     
Sbjct: 205 QWGKMSEARELFDRM-------PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR-DVF 256

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
            W A+VS    +G   M + A +    +   N  ++ ++   Y   R  D   EL  MM 
Sbjct: 257 TWTAVVSGYAQNG---MLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 489 DRGL 492
            R +
Sbjct: 314 CRNV 317


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 294/545 (53%), Gaps = 67/545 (12%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           N    T    L + ++   + L +Q H QI+  G  +  FV + L+  YA  G  + +  
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 77  VFNSIQHKDVYLYNSLINGYVKN----------HG---------------------HNEA 105
           VF+ +Q ++V +YN++I G +++          HG                       EA
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEA 254

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           ++LF +M    ++ D +T  ++    G ++ L  G  IH L I+ G+  +V + ++L+ M
Sbjct: 255 MDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDM 314

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y KC                                    V  +  VF +M  +NV +WT
Sbjct: 315 YCKCRS----------------------------------VRYAEAVFKRMANKNVVSWT 340

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           AM+ GY QNG  +EA+ +F +MQ ++ IEP+  +L SV+ +C++L  L  G Q H  A+ 
Sbjct: 341 AMLVGYGQNGFSEEAVRVFCDMQ-RNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALV 399

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             L   +++ NALI +Y KCGS++ + ++F++ SF +D ++W+++VSGY   GK +E + 
Sbjct: 400 SGLISFITVSNALITLYGKCGSIEDSNQLFDEMSF-RDEVSWTALVSGYAQFGKANETID 458

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           L+ +M+  G KPD +T + VLSAC R+GL+  G + + S++  + I P ++   C++D+ 
Sbjct: 459 LFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLF 518

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
           GRAG+L+ A +FI  MP  P    W  L+S+  ++GN E+   A +SL++L+P+NP+ Y+
Sbjct: 519 GRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYI 578

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYE 525
            LS++YA+  +W  VA+LR  M+++G +K PG SWI    K + FS  D++ P S  IY 
Sbjct: 579 LLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYA 638

Query: 526 MLDDL 530
            L+ L
Sbjct: 639 ELEKL 643



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/442 (31%), Positives = 232/442 (52%), Gaps = 10/442 (2%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    +++AY+  G  +  Q +F+ + ++D   +NSLI+GYV      EA++ +++M 
Sbjct: 70  NSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMM 129

Query: 114 YSNV-SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
              V + +  T +T+  L      +++G  IHG  +K GF   V + +SL+ MY K G  
Sbjct: 130 KDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLV 189

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
           S    +FDE+ +RNV  +N  I+G   SG   +V  S+R+F  MK R+  +WT MI G +
Sbjct: 190 SVASQVFDEVQERNVVMYNTMITGLLRSG---MVKDSKRLFHGMKERDSISWTTMITGLI 246

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG   EA+ LF +M+ ++ +  ++ +  SVL  C  L  L  GK+IH   IR   NH+V
Sbjct: 247 QNGLEAEAMDLFRDMR-QEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNV 305

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            + +AL+DMY KC S+  A  VF+  + NK+ ++W++++ GYG +G   EAV ++  M  
Sbjct: 306 FVGSALVDMYCKCRSVRYAEAVFKRMA-NKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQR 364

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G +PD  T+  V+S+C     + EG + +   + +  I   T +   ++ + G+ G ++
Sbjct: 365 NGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFIT-VSNALITLYGKCGSIE 423

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQ-LEPENPSNYVSLSNL 470
            +      M      S W ALVS     G + E  DL  + L+Q L+P+  +    LS  
Sbjct: 424 DSNQLFDEMSFRDEVS-WTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSAC 482

Query: 471 YASSRRWDAVAELRTMMKDRGL 492
             +           +M+KD G+
Sbjct: 483 SRAGLVERGQQYFESMLKDHGI 504



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 163/346 (47%), Gaps = 35/346 (10%)

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           KL  E ++      +H L IK     +  L N+L++ Y K G  +   ++FD+MPQ N  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           SWN  +S ++ SGD S +   + +F  M  R+  +W ++I+GYV  G + EA+  +  M 
Sbjct: 73  SWNTMLSAYSKSGDLSTM---QEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMM 129

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
               +  N+++  ++L   SS   +  G+QIHG  ++      V + ++L+DMY+K G +
Sbjct: 130 KDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLV 189

Query: 309 DCARRVFEDSS------FN------------------------KDAITWSSIVSGYGLHG 338
             A +VF++        +N                        +D+I+W+++++G   +G
Sbjct: 190 SVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNG 249

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              EA+ L+  M   G   D  T   VL+ACG    + EG EI+  +I +        + 
Sbjct: 250 LEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRS-GYNHNVFVG 308

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           + +VDM  +   +  A    K M  +   S W A++     +G SE
Sbjct: 309 SALVDMYCKCRSVRYAEAVFKRMANKNVVS-WTAMLVGYGQNGFSE 353


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 203/604 (33%), Positives = 306/604 (50%), Gaps = 86/604 (14%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           +  ARN F  + S+  TS  A V  +        + KL  +   +        N      
Sbjct: 32  IDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPER--------NTISWNG 83

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L++ Y   G  ++++ VF+ +  ++V  + S++ GYV+    +EA  LF  M      P+
Sbjct: 84  LVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRM------PE 137

Query: 121 DFTLATISKLSGEIKDLNVG---MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
              ++    L G I+D  V     L   + +K     DV+ + +++      G+ SE   
Sbjct: 138 KNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK-----DVVASTNMIGGLCSEGRLSEARE 192

Query: 178 LFDEMPQRNVG-------------------------------SWNVRISGHASSG----- 201
           +FDEMPQRNV                                +W   + G+  SG     
Sbjct: 193 IFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEA 252

Query: 202 --------------------DFSL---VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
                                F L   V ++R VFDQMK ++   W+A+I  Y + G   
Sbjct: 253 AELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFEL 312

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           EAL LF  MQ ++ + PN  S++S+L  C SL  L  G+Q+H   +R   + D+ + + L
Sbjct: 313 EALALFSLMQ-REGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVL 371

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           I MY KCG L   +RVF+  S +KD + W+SI++GY  HG G +A+ ++++M   G+ PD
Sbjct: 372 ITMYIKCGDLVTGKRVFDRFS-SKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPD 430

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            IT +GVLSACG +G + EGLEI+ S+ + Y++   TE  AC+VD+LGRAG+L+ A++ I
Sbjct: 431 EITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLI 490

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
           + MPVE    +WGAL+SA   H N ++ ++A K L+QLEP +   Y+ LSNLYAS  RW 
Sbjct: 491 ENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWK 550

Query: 479 AVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA-HPCSVSIYEMLDDLILIMRGA 537
            VAELR  M+ R + KSPGCSWI +  K H F+    A HP    I + L+ L   +R A
Sbjct: 551 DVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREA 610

Query: 538 AASP 541
              P
Sbjct: 611 GYCP 614


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 171/507 (33%), Positives = 275/507 (54%), Gaps = 37/507 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  +Q H +I+  G+I++  V T L++ YA CG    ++ VF  I  ++V  +N++I 
Sbjct: 422 ALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMIT 481

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            YV++  ++ A+  F  +    + PD  T  +I  +      L +G  +  L I+ GF  
Sbjct: 482 AYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFES 541

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+ + N+L+SM+V CG     +NLF++MP+R++ SWN                       
Sbjct: 542 DLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNT---------------------- 579

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                       +I G+VQ+G+   A   F  MQ +  ++P++++   +L  C+S   L+
Sbjct: 580 ------------IIAGFVQHGENQFAFDYFKMMQ-ESGVKPDQITFTGLLNACASPEALT 626

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+++H       L+ DV +   LI MY+KCGS+D A  VF +    K+  +W+S+++GY
Sbjct: 627 EGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITGY 685

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG+G EA+ L+ +M   G KPD IT VG LSAC  +GLI EGL  + S +  + I+P 
Sbjct: 686 AQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFES-MKDFNIEPR 744

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+VD+ GRAG L  A++FI  M V+P   +WGAL+ A  +H + E+ +   +  +
Sbjct: 745 MEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKL 804

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +L+P +   YV LSN+YA++  W  V ++R +M DRG+ K PG SWI + G+ H F   D
Sbjct: 805 ELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDD 864

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASP 541
           K HP    I+  L  L + M+     P
Sbjct: 865 KTHPQIEEIHAELGRLHMEMKKLGYVP 891



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/532 (25%), Positives = 234/532 (43%), Gaps = 73/532 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    LQ+   H++L   ++ H+ I       + F+   LI+ YA CG    ++ +F+ +
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KDVY +N L+ GYV++  + EA  L   M    V PD +T   +     + K+++ G 
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGG 225

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCG------------------------------- 170
            +  L +  G+  D+ +  +L++M++KCG                               
Sbjct: 226 ELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHR 285

Query: 171 KFSECLNLFDEMPQRNVGSWNV------RISGHASSGDFSLVVRSR-------------- 210
           +F +  NLF  M +  V    V      +   H  + +    V +R              
Sbjct: 286 QFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGT 345

Query: 211 ----------------RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
                            VF+ +K RNV +WTAMI G+ Q+G ++EA + F +M ++  IE
Sbjct: 346 ALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKM-IESGIE 404

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           PN+V+ +S+L  CS    L  G+QIH   I+     D  +  AL+ MY+KCGSL  AR V
Sbjct: 405 PNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNV 464

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           FE  S  ++ + W+++++ Y  H K   AV  +  ++  G KPD  T   +L+ C     
Sbjct: 465 FERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDA 523

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +  G  + + +I     +    I   +V M    G L  A++    MP E     W  ++
Sbjct: 524 LELGKWVQSLIIRA-GFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTII 581

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486
           +  V HG ++     Y  ++Q     P + ++ + L  +    +A+ E R +
Sbjct: 582 AGFVQHGENQFA-FDYFKMMQESGVKP-DQITFTGLLNACASPEALTEGRRL 631



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 139/321 (43%), Gaps = 41/321 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S+T    L V  +  +L+L K   S I+  G  S+  +   L++ +  CG    +  +FN
Sbjct: 508 SSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFN 567

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            +  +D+  +N++I G+V+ HG N+ A + F  M  S V PD  T   +       + L 
Sbjct: 568 DMPERDLVSWNTIIAGFVQ-HGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALT 626

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  +H L  +     DV++   L+SMY KCG   +   +F  +P++NV SW   I+   
Sbjct: 627 EGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMIT--- 683

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                          GY Q+G   EAL LF +MQ ++ ++P+ +
Sbjct: 684 -------------------------------GYAQHGRGKEALELFCQMQ-QEGVKPDWI 711

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL--CNALIDMYSKCGSLDCARRVFE 316
           + V  L  C+    +  G  +H F   K+ N +  +     ++D++ + G L  A     
Sbjct: 712 TFVGALSACAHAGLIKEG--LHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFIN 769

Query: 317 DSSFNKDAITWSSIVSGYGLH 337
                 D+  W +++    +H
Sbjct: 770 KMQVKPDSRLWGALLGACQVH 790



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           +N     A +N   + G L EA+++ L +     I+ ++ +  S+L  C     L  G++
Sbjct: 67  KNTQRANAFLNRLSKAGQLSEAMLVLLSVD-SPHIQIHRQTYSSLLQLCIKHKNLGDGER 125

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           IH      ++  D+ + N LI MY+KCG+ + A+++F++   +KD  +W+ ++ GY  H 
Sbjct: 126 IHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMP-DKDVYSWNLLLGGYVQHR 184

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           +  EA  L+ +MV  G KPD  T V +L+AC  +  +++G E+++ ++N         + 
Sbjct: 185 RYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNA-GWDTDLFVG 243

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
             +++M  + G +D AL     +P     + W ++++    H
Sbjct: 244 TALINMHIKCGGVDDALKVFNNLPRRDLIT-WTSMITGLARH 284


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/484 (35%), Positives = 279/484 (57%), Gaps = 5/484 (1%)

Query: 45  QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
           Q+L +G   + ++   +I      G+   +  VF+    +D+  +NSLINGYV+     E
Sbjct: 179 QVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPRE 238

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           A+ ++  M   +V PD+ T+  +     +++ L +G  IH    + G  + + L N+LM 
Sbjct: 239 AMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMD 298

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MYVKCG       LFD M ++ V SW   I G+A +G   L+  + ++F  M  +NV AW
Sbjct: 299 MYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNG---LLDMAGKLFHDMPEKNVVAW 355

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            AMI   VQ     EAL LF EMQ  + ++P+KV+++  L  CS L  L  G   H +  
Sbjct: 356 NAMIGSCVQANLSFEALELFREMQWSN-MKPDKVTMLHCLSACSQLGALDTGMWTHNYIK 414

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           +  L+ DV+L  ALIDMY+KCG++  A +VF +    ++++TW++I+ G  L+G  ++A+
Sbjct: 415 KHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMP-RRNSLTWTAIIGGLALYGNVNDAI 473

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
             ++KM+  G  PD IT +GVL+AC   GL+ EG + ++ + + + + P  +  +C+V++
Sbjct: 474 FYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNL 533

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           LGRAG L+ A + IKTMP+E    +WGAL  A  +H N  + + A   L+ L+P +   Y
Sbjct: 534 LGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIY 593

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           V L+N+Y  + +W+    +R MM +RG++K+PG S I ++G  + F V DK+HP S  IY
Sbjct: 594 VLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDKSHPQSEQIY 653

Query: 525 EMLD 528
           E  +
Sbjct: 654 ECFN 657



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 206/446 (46%), Gaps = 78/446 (17%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYL 88
           +S    KQ  +Q++  G I + F S++LI+    C       L     + N++Q+ +V+ 
Sbjct: 64  KSFSQLKQIQAQMILTGLILDGFASSRLIS---FCAISESRNLDYCIKILNNLQNPNVFS 120

Query: 89  YNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
           +N++I G V++    + L L+  M   +   PD++T + + K+   +    +G  I G  
Sbjct: 121 WNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQV 180

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           +K+GF  D+ L N ++ M V  G+      +FDE   R++ SWN                
Sbjct: 181 LKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNS--------------- 225

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
                              +INGYV+     EA+ ++ +M + + ++P++V+++ V+  C
Sbjct: 226 -------------------LINGYVRRRQPREAMGIYQQM-ITEHVKPDEVTMIGVVSAC 265

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           + L  L  G++IH +     LN  +SL NAL+DMY KCG L+  + +F D+   K  ++W
Sbjct: 266 AQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLF-DNMRKKTVVSW 324

Query: 328 SSIVSGYGLHG-------------------------------KGHEAVLLYNKMVCLGSK 356
           ++++ GY  +G                                  EA+ L+ +M     K
Sbjct: 325 TTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMK 384

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD +T++  LSAC + G ++ G+  +N  I  + +     +   ++DM  + G + +AL 
Sbjct: 385 PDKVTMLHCLSACSQLGALDTGMWTHN-YIKKHNLSLDVALGTALIDMYAKCGNMTKALQ 443

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGN 442
               MP   S + W A++    ++GN
Sbjct: 444 VFNEMPRRNSLT-WTAIIGGLALYGN 468



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 131/264 (49%), Gaps = 15/264 (5%)

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG--DFSLVVRSR---- 210
           +L+N L+S+   C  FS+   +  +M    +      + G ASS    F  +  SR    
Sbjct: 51  VLSNPLLSLLENCKSFSQLKQIQAQMILTGL-----ILDGFASSRLISFCAISESRNLDY 105

Query: 211 --RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
             ++ + ++  NV++W A+I G V++ +  + LVL+  M  +    P+  +   +   C+
Sbjct: 106 CIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCA 165

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           +L+    G +I G  ++   + D+ L N +I M    G    A +VF++    +D ++W+
Sbjct: 166 NLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCV-RDLVSWN 224

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           S+++GY    +  EA+ +Y +M+    KPD +T++GV+SAC +   +  G EI+   I  
Sbjct: 225 SLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHR-YIEE 283

Query: 389 YRIKPTTEICACVVDMLGRAGQLD 412
             +     +   ++DM  + G L+
Sbjct: 284 SGLNLKISLVNALMDMYVKCGDLE 307


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 302/559 (54%), Gaps = 36/559 (6%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           L+ AR  F  +  R+  S T    +   A H  + L +        L    +      ++
Sbjct: 116 LADARGLFDEMPVRD--SVTYNVMISSHANHGLVSLARH----YFDLAPEKDAVSWNGML 169

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
            AY   G+  +++ +FNS    DV  +N+L++GYV+    +EA ELF  M   +V   + 
Sbjct: 170 AAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNI 229

Query: 123 TLATISKL-----------SGEIKDLNV------GMLIHGLSIKIGFVVDVILA------ 159
            ++  ++            +  ++D+        G   +G+  +   V D +        
Sbjct: 230 MVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSW 289

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N++++ Y++     E   LF+ MP RNV SWN  ++G+A +G   ++  ++ VFD M ++
Sbjct: 290 NAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAG---MLEEAKAVFDTMPQK 346

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEM-QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           +  +W AM+  Y Q G  +E L LF+EM +  + +  N+ +   VL TC+ +  L  G Q
Sbjct: 347 DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV--NRSAFACVLSTCADIAALECGMQ 404

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HG  IR        + NAL+ MY KCG+++ AR  FE+    +D ++W+++++GY  HG
Sbjct: 405 LHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
            G EA+ +++ M    +KPD IT+VGVL+AC  SGL+ +G+  + S+ + + +    E  
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY 523

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C++D+LGRAG+L  A D +K MP EP  ++WGAL+ AS +H N E+   A + + +LEP
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEP 583

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
           EN   YV LSN+YASS +W    ++R MM++RG+KK PG SWI +  K H FS  D  HP
Sbjct: 584 ENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHP 643

Query: 519 CSVSIYEMLDDLILIMRGA 537
               IY  L+DL + M+ A
Sbjct: 644 EKEKIYAFLEDLDMRMKKA 662



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 190/383 (49%), Gaps = 27/383 (7%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS-NMYYSNVSP 119
           L+ A A+      ++ +F+ +  +D   YN +I+ +  NHG      L S   +Y +++P
Sbjct: 106 LLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHA-NHG------LVSLARHYFDLAP 158

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +   ++    L+  +++  V       + +  +  DVI  N+LMS YV+ GK SE   LF
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW--DVISWNALMSGYVQWGKMSEARELF 216

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D MP R+V SWN+ +SG+A  GD   +V +RR+FD    R+V+ WTA+++GY QNG L+E
Sbjct: 217 DRMPGRDVVSWNIMVSGYARRGD---MVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEE 273

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           A  +F  M      E N VS  +++        +   K++      +    +V+  N ++
Sbjct: 274 ARRVFDAMP-----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTML 324

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
             Y++ G L+ A+ VF D+   KDA++W+++++ Y   G   E + L+ +M   G   + 
Sbjct: 325 TGYAQAGMLEEAKAVF-DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 383

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINT-YRIKPTTEICACVVDMLGRAGQLDRALDFI 418
                VLS C     +  G++++  +I   Y +     +   ++ M  + G ++ A +  
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGV--GCFVGNALLAMYFKCGNMEDARNAF 441

Query: 419 KTMPVEPSPSIWGALVSASVMHG 441
           + M  E     W  +++    HG
Sbjct: 442 EEME-ERDVVSWNTMIAGYARHG 463



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 30/304 (9%)

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           N  I+ H  +G    V  + R+F  M RR+   + AM+ GY  NG L  A  LF  +   
Sbjct: 42  NKAITAHMRAGR---VADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP 98

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           D    N  +L+  L   SSL    G        +R  + ++V     +I  ++  G +  
Sbjct: 99  DNYSYN--TLLHALAVSSSLADARG--LFDEMPVRDSVTYNV-----MISSHANHGLVSL 149

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR  F D +  KDA++W+ +++ Y  +G+  EA  L+N      ++ D+I+   ++S   
Sbjct: 150 ARHYF-DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDVISWNALMSGYV 204

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
           + G ++E  E+++ +       P  ++ +   +V    R G +  A       PV     
Sbjct: 205 QWGKMSEARELFDRM-------PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR-DVF 256

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
            W A+VS    +G   M + A +    +   N  ++ ++   Y   R  D   EL  MM 
Sbjct: 257 TWTAVVSGYAQNG---MLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 489 DRGL 492
            R +
Sbjct: 314 CRNV 317


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 186/582 (31%), Positives = 298/582 (51%), Gaps = 69/582 (11%)

Query: 22   TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
            T    L   A    L++ +Q HS I+      N FV   L+  YA CG   +++  F  I
Sbjct: 452  TYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFI 511

Query: 82   QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            +++D   +N++I GYV+    +EA  +F  M    ++PD+ +LA+I      ++ L  G 
Sbjct: 512  RNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGE 571

Query: 142  LIHGLSIKIGFVVDVILANSLMSMYVKCGKFS---------------------------- 173
             +H   +K G    +   +SL+ MYVKCG                               
Sbjct: 572  QVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQND 631

Query: 174  --ECLNLFDEMPQRNVGSWNVRIS-------------------------GHASSGDF--- 203
              E ++LF EM    +    +  +                         G    GDF   
Sbjct: 632  LVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGV 691

Query: 204  SLVV---RSRR------VFDQMKR-RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
            SL+V    S+R      +F + +  ++   WTA+I+G+ QNG  +EAL L+ EM  ++  
Sbjct: 692  SLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMH-RNNA 750

Query: 254  EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
             P++ +  SVL  CS L  L  G+ IH       L+ D    +A++DMY+KCG +  + +
Sbjct: 751  RPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQ 810

Query: 314  VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
            VFE+     D I+W+S++ G+  +G    A+ ++++M     +PD +T +GVL+AC  +G
Sbjct: 811  VFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAG 870

Query: 374  LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
             ++EG EI++ ++++Y+I P  + CAC++D+LGR G L  A +FI  +  EP+  IW  L
Sbjct: 871  RVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATL 930

Query: 434  VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
            + A  +HG+      A + LI+LEPEN S YV LSN+YA+S  WD V  +R  M+++GL+
Sbjct: 931  LGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLR 990

Query: 494  KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            K PGCSWI +  KT+ F   DK HP +  I+ +L DLI +M+
Sbjct: 991  KLPGCSWIVVGQKTNLFVAGDKFHPSAGEIHALLKDLIALMK 1032



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 235/498 (47%), Gaps = 56/498 (11%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           L  AR  F  V   +  S  A +  ++QV     +LK+ +     +  LG + +      
Sbjct: 233 LVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFED----MQKLGLVPDQVAFVT 288

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +ITA    G+   +  +F  + + +V  +N +I+G+VK     EA++ F NM+ + V   
Sbjct: 289 VITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKST 348

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
             TL ++      ++ LN G+L+H  +IK G   +V + +SL++MY KC K         
Sbjct: 349 RSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEA------ 402

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                                       +++VFD +  RN+  W AM+ GY QNG   + 
Sbjct: 403 ----------------------------AKKVFDALDERNLVLWNAMLGGYAQNGYASKV 434

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           + LF EM+      P++ +  S+L  C+ L  L  G+Q+H F I+    +++ + N L+D
Sbjct: 435 MKLFSEMR-GCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVD 493

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY+KCG+L+ AR+ FE    N+D ++W++I+ GY       EA  ++ +M+  G  PD +
Sbjct: 494 MYAKCGALEEARQQFEFIR-NRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEV 552

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC----ACVVDMLGRAGQLDRALD 416
           ++  +LS C     + +G +++      + +K   + C    + ++DM  + G ++ A  
Sbjct: 553 SLASILSGCANLQALEQGEQVH-----CFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARY 607

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN--YVSLSNLYASS 474
               MP     S+  A+++    +   E  DL  +  +Q E  NPS   + SL +     
Sbjct: 608 VFSCMPSRSVVSM-NAIIAGYAQNDLVEAIDLFQE--MQNEGLNPSEITFASLLDACTGP 664

Query: 475 RRWDAVAELRTMMKDRGL 492
            + +   ++  +++ RGL
Sbjct: 665 YKLNLGRQIHCLIQKRGL 682



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 210/442 (47%), Gaps = 50/442 (11%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ 75
           R+    T Q   Q S T +++      H+Q L  G  S   + + ++  YA CG    + 
Sbjct: 83  RHPFDETPQRLAQASRTSKTI------HAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAA 136

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
             FN ++ +D+  +NS+++ Y +     + +  F ++    VSP+ FT A +      + 
Sbjct: 137 KAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLV 196

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           D+++G  +H   IK+GF  +     SL+ MY KCG   +   +FD +   +  SW   I+
Sbjct: 197 DIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIA 256

Query: 196 GHASSGDFSLVVRSRRVFD-----------------------------------QMKRRN 220
           G+   G   L   + +VF+                                   QM   N
Sbjct: 257 GYVQVG---LPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTN 313

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
           V AW  MI+G+V+ G   EA+  F  M  K  ++  + +L SVL   +SL  L+ G  +H
Sbjct: 314 VVAWNVMISGHVKRGCDIEAIDFFKNM-WKTGVKSTRSTLGSVLSAIASLEALNYGLLVH 372

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
             AI++ LN +V + ++LI+MY+KC  ++ A++VF D+   ++ + W++++ GY  +G  
Sbjct: 373 AQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVF-DALDERNLVLWNAMLGGYAQNGYA 431

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            + + L+++M   G  PD  T   +LSAC     +  G ++++ +I  +  +    +   
Sbjct: 432 SKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIK-HNFEYNLFVENT 490

Query: 401 VVDMLGRAGQLDRA---LDFIK 419
           +VDM  + G L+ A    +FI+
Sbjct: 491 LVDMYAKCGALEEARQQFEFIR 512



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 174/359 (48%), Gaps = 55/359 (15%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           IH  ++K GF     L ++++ +Y KCG                    NV  +  A    
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAKCG--------------------NVEFAAKA---- 138

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                     F+Q+++R++ AW ++++ Y + G L++ +  F  +Q    + PN+ +   
Sbjct: 139 ----------FNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQ-NCGVSPNQFTYAI 187

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL +C+ L+ +  GKQ+H   I+     +     +LIDMYSKCGSL  AR++F D+  + 
Sbjct: 188 VLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIF-DAVVDP 246

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D ++W+++++GY   G   EA+ ++  M  LG  PD +  V V++AC   G +++  +++
Sbjct: 247 DTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLF 306

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM---PVEPSPSIWGALVSASVM 439
             + NT  +     I   V     + G    A+DF K M    V+ + S  G+++SA   
Sbjct: 307 VQMPNTNVVAWNVMISGHV-----KRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAI-- 359

Query: 440 HGNSEMQDLAYKSLIQLEP----ENPSNYV--SLSNLYASSRRWDAVAELRTMMKDRGL 492
              + ++ L Y  L+  +      N + YV  SL N+YA   + +A  ++   + +R L
Sbjct: 360 ---ASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNL 415



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT    L+  +   SL   +  HS I  +G  S+    + ++  YA CG    S  VF  
Sbjct: 755 ATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEE 814

Query: 81  IQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           +  K DV  +NS+I G+ KN     AL++F  M ++ + PDD T   +         ++ 
Sbjct: 815 MGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSE 874

Query: 140 GMLIHGLSIKIGFVVDVILANSLM-SMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGH 197
           G  I  + +    +V  +   + M  +  + G   E     D++  + N   W   +   
Sbjct: 875 GREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGAC 934

Query: 198 ASSGDFSLVVRSRRVFD---QMKRRNVYAWTAMINGYVQNGDLDE 239
              GD    +R RR  +   +++  N   +  + N Y  +G+ DE
Sbjct: 935 RIHGD---DIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDE 976


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 174/467 (37%), Positives = 258/467 (55%), Gaps = 36/467 (7%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           +S   I AYA CG    ++ VF+ I  K V  +N+LI G+ +N    +AL L   M YS 
Sbjct: 387 LSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSG 446

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
             PD FT++++      +K L  G  IHG  ++ G   D  +  SL+S Y+ CGK     
Sbjct: 447 QQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGK----- 501

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
                                ASS        +R +FD+MK +N+ +W AMI+GY QNG 
Sbjct: 502 ---------------------ASS--------ARVLFDRMKDKNLVSWNAMISGYSQNGL 532

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
             E+L LF +  L + I+ +++++VSV   CS L  L  GK+ HG+ ++     D  +  
Sbjct: 533 PYESLALFRK-SLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGC 591

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           ++IDMY+K G +  +R+VF D   +K+  +W++I+  +G+HG G EA+ LY +M  +G  
Sbjct: 592 SIIDMYAKSGCIKESRKVF-DGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQM 650

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD  T +G+L ACG +GL+ EGL+ +  + N   I+P  E  AC++DML RAG+LD AL 
Sbjct: 651 PDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALR 710

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
            +  MP E    IW +L+ +    G  E+ +   K L++LEP+   NYV LSNLYA   +
Sbjct: 711 LVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGK 770

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSI 523
           WD V  +R MMK+ GL+K  GCSWI + G+ + F V D   P S  I
Sbjct: 771 WDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEI 817



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 193/348 (55%), Gaps = 39/348 (11%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFV-STKLITAYALCGQPTQSQLVFNSIQHK 84
            LQ     + ++  ++ H  +    H  N +V +T+LI  YA+CG P  S+LVF++++ K
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           ++  +N+L++GY +N  + + +++F ++   ++  PD+FT  ++ K  G I D+ +G +I
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVI 168

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HG+ IK+G V+DV + N+L+ MY KCG   E +                           
Sbjct: 169 HGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAM--------------------------- 201

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                  +VFD M   N+ +W +MI  + +NG   ++  L +EM  ++ + P+ V++V++
Sbjct: 202 -------KVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTI 254

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           LP C+    +  G  IHG A++  L+ +V + NA++ MYSKCG L+ A+  F  ++ NK+
Sbjct: 255 LPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNN-NKN 313

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS--KPDIITIVGVLSAC 369
            ++W++++S + L G  +EA  L  +M   G   K + +TI+ VL AC
Sbjct: 314 VVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 214/478 (44%), Gaps = 73/478 (15%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           ++L +  H  ++ +G + + FV   L+  Y  CG   ++  VF+ +   ++  +NS+I  
Sbjct: 162 VRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICA 221

Query: 96  YVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           + +N    ++ +L   M     + PD  T+ TI  +     ++++GM IHGL++K+G   
Sbjct: 222 FSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSE 281

Query: 155 DVILA-------------------------------NSLMSMYVKCGKFSECLNLF---- 179
           +V++                                N+++S +   G  +E  NL     
Sbjct: 282 EVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQ 341

Query: 180 ---DEMPQRNVGSWNV--------------RISGHASSGDFSLVVRS------------- 209
              +EM    V   NV               + G++    F  V  S             
Sbjct: 342 IQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGAL 401

Query: 210 ---RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
               +VF  +  + V +W A+I G+ QNGD  +AL L  +M    + +P+  ++ S+L  
Sbjct: 402 NSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQ-QPDWFTISSLLLA 460

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+ L  L  GK+IHG+ +R  L  D  +  +L+  Y  CG    AR +F D   +K+ ++
Sbjct: 461 CAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLF-DRMKDKNLVS 519

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++SGY  +G  +E++ L+ K +  G +   I IV V  AC +   +  G E +  V+
Sbjct: 520 WNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVL 579

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
              + +     C+ ++DM  ++G +  +      +  + + + W A++ A  +HG+ +
Sbjct: 580 KALQTEDAFVGCS-IIDMYAKSGCIKESRKVFDGLK-DKNVASWNAIIVAHGIHGHGK 635



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 142/267 (53%), Gaps = 12/267 (4%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           SR VFD M+ +N+  W A+++GY +NG   + + +F+++      +P+  +  SV+  C 
Sbjct: 98  SRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACG 157

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            ++ +  G+ IHG  I+  L  DV + NAL+ MY KCG++D A +VF D     + ++W+
Sbjct: 158 GILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVF-DFMPETNLVSWN 216

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSK---PDIITIVGVLSACGRSGLINEGLEIYNSV 385
           S++  +  +G   ++  L  +M  LG +   PD++T+V +L  C   G ++ G+ I+   
Sbjct: 217 SMICAFSENGFSRDSFDLLMEM--LGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLA 274

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRA-LDFIKTMPVEPSPSIWGALVSASVMHGN-S 443
           +    +     +   +V M  + G L+ A + F+K      +   W  ++SA  + G+ +
Sbjct: 275 VKL-GLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNN--NKNVVSWNTMISAFSLEGDVN 331

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNL 470
           E  +L  +  IQ E E  +N V++ N+
Sbjct: 332 EAFNLLQEMQIQGE-EMKANEVTILNV 357



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 137/314 (43%), Gaps = 42/314 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A  +SL+  K+ H  +L  G  ++ FV T L++ Y  CG+ + ++++F+ +
Sbjct: 453 TISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRM 512

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + K++  +N++I+GY +N    E+L LF       +   +  + ++     ++  L +G 
Sbjct: 513 KDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGK 572

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
             HG  +K     D  +  S++ MY K G   E   +FD +  +NV SWN  I  H   G
Sbjct: 573 EAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHG 632

Query: 202 D----FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                  L  R ++V  QM  R  Y    M  G+   G ++E L  F EMQ  + IEP  
Sbjct: 633 HGKEAIELYERMKKV-GQMPDRFTYIGILMACGHA--GLVEEGLKYFKEMQNFNLIEP-- 687

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
                                        +L H       LIDM ++ G LD A R+  +
Sbjct: 688 -----------------------------KLEHYA----CLIDMLARAGRLDDALRLVNE 714

Query: 318 SSFNKDAITWSSIV 331
                D   WSS++
Sbjct: 715 MPEEADNRIWSSLL 728


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 171/499 (34%), Positives = 294/499 (58%), Gaps = 8/499 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLIT--AYALCGQPTQSQLVFNSIQHKDVYLYNSL 92
           ++K  ++ H+ +L  G   +P   + ++   A +  G    + LVF  I   +++ +N++
Sbjct: 36  TMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTI 95

Query: 93  INGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I G+ ++   + A+ LF +M   S+V P   T  ++ K   ++   + G  +HG  IK+G
Sbjct: 96  IRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLG 155

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              D  + N+++ MY  CG  SE    F E    ++ +WN  I G A  G+   V  SR+
Sbjct: 156 LQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGE---VDESRK 212

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +FD+M  RN  +W +MI+GYV+NG L EAL LF +MQ ++RI+P++ ++VS+L   + L 
Sbjct: 213 LFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQ-EERIKPSEFTMVSLLNASARLG 271

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  G+ IH +  +     +V +  ++IDMY KCGS+  A +VFE +   K   +W++++
Sbjct: 272 ALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPL-KGLSSWNTMI 330

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            G  ++G  +EA+ L++++ C   +PD +T VGVL+AC  SGL+++  E ++ +  TY+I
Sbjct: 331 LGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKI 390

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           +P+ +  +C+VD LGRAG L+ A + I+ MPV P   IW +L+SA   HGN E+   A K
Sbjct: 391 EPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAK 450

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            ++ L+  +   YV LSN+YA+S +++   E R  MK++ ++K PGCS I ++G+ H F 
Sbjct: 451 HIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEIHEFV 510

Query: 512 VADKAHPCSVSIYEMLDDL 530
              + HP +  +Y +L++L
Sbjct: 511 AGGRLHPQAQEVYSLLNEL 529



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 107/265 (40%), Gaps = 18/265 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L  SA   +LK  +  H  I       N  V+  +I  Y  CG   ++  VF   
Sbjct: 259 TMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMA 318

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA---TISKLSGEIKDLN 138
             K +  +N++I G   N   NEA++LFS +  SN+ PDD T     T    SG +    
Sbjct: 319 PLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAK 378

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGH 197
               +   + KI     +   + ++    + G   E   L   MP   +   W+  +S  
Sbjct: 379 EYFSLMSKTYKIE--PSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSAC 436

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
              G+  L  R+ +    +   +   +  + N Y  +   +EA+   L M+ K +IE   
Sbjct: 437 RKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEK-QIEKE- 494

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGF 282
                  P C SLI ++G  +IH F
Sbjct: 495 -------PGC-SLIEVNG--EIHEF 509


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 165/499 (33%), Positives = 269/499 (53%), Gaps = 37/499 (7%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H   +  G IS   +   L+  Y+ C     +  +F +++ K+V  + ++I  Y +    
Sbjct: 108 HGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHF 167

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           ++   LF  M    + PD F + +        + L  G  +HG +I+ G    + +AN+L
Sbjct: 168 DKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANAL 227

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           M MYVKCG   E                                  +R +FD + +++  
Sbjct: 228 MEMYVKCGYMEE----------------------------------ARFIFDHVTKKDTI 253

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +W  +I GY ++   +EA  LF EM L+ R  PN V++  +LP  +SL  L  G+++H +
Sbjct: 254 SWNTLIGGYSRSNLANEAFTLFNEMLLQLR--PNAVTMACILPAAASLSSLERGREMHAY 311

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
           A+R+    D  + NAL+DMY KCG+L  ARR+F D   NK+ I+W+ +++GYG+HG+G +
Sbjct: 312 AVRRGYLEDNFVANALVDMYVKCGALLLARRLF-DMLTNKNLISWTIMIAGYGMHGRGRD 370

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ L+ +M   G +PD  +   +L AC  SGL +EG   +N++ N +RI+P  +  AC+V
Sbjct: 371 AIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMV 430

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+L   G L  A +FI+TMP+EP  SIW +L+    +H N ++ +   + + +LEPEN  
Sbjct: 431 DLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTG 490

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            YV L+N+YA + RW+AV +L+  +  RGL+++ GCSWI + GK H F   ++ HP  + 
Sbjct: 491 YYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMR 550

Query: 523 IYEMLDDLILIMRGAAASP 541
           I E LDD+   M+     P
Sbjct: 551 IAEFLDDVARRMQEEGHDP 569



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 149/324 (45%), Gaps = 47/324 (14%)

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G+++HG  +K GF     + N+L+S Y K  +  + L +FDEMPQR++ SWN  I G AS
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                             NG  D+A+ LF+ M L+ + E +  +
Sbjct: 63  ----------------------------------NGLYDKAVELFVRMWLEGQ-ELDSTT 87

Query: 260 LVSVLPTC-SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           L+SV+P C  S     GG  +HG+++R  L  + SL NAL+DMYS C       ++F + 
Sbjct: 88  LLSVMPACVQSHYSFIGG-VVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNM 146

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              K+ ++W+++++ Y   G   +   L+ +M   G +PD+  I   L A   +  +  G
Sbjct: 147 E-QKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHG 205

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
             ++   I    I+    +   +++M  + G ++ A  FI     +     W  L+    
Sbjct: 206 KSVHGYAIRN-GIEEVLPVANALMEMYVKCGYMEEA-RFIFDHVTKKDTISWNTLIGG-- 261

Query: 439 MHGNSEMQDLAY----KSLIQLEP 458
            +  S + + A+    + L+QL P
Sbjct: 262 -YSRSNLANEAFTLFNEMLLQLRP 284



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 14/236 (5%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A + SLK  K  H   +  G      V+  L+  Y  CG   +++ +F+ +  KD 
Sbjct: 193 LDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDT 252

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N+LI GY +++  NEA  LF+ M    + P+  T+A I   +  +  L  G  +H  
Sbjct: 253 ISWNTLIGGYSRSNLANEAFTLFNEMLL-QLRPNAVTMACILPAAASLSSLERGREMHAY 311

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           +++ G++ D  +AN+L+ MYVKCG       LFD +  +N+ SW + I+G+   G     
Sbjct: 312 AVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHG----- 366

Query: 207 VRSR---RVFDQMKRRNVY----AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
            R R    +F+QMK   +     +++A++     +G  DE    F  M+ + RIEP
Sbjct: 367 -RGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEP 421



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 56/109 (51%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
            + T+   L  +A+  SL+  ++ H+  +  G++ + FV+  L+  Y  CG    ++ +F
Sbjct: 285 NAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLF 344

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           + + +K++  +  +I GY  +    +A+ LF  M  S + PD  + + I
Sbjct: 345 DMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAI 393


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 177/505 (35%), Positives = 288/505 (57%), Gaps = 15/505 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ--SQLVFNSIQHKDVYLYNSL 92
           +L   KQ H  +L  G   + ++ TKLI      G P    ++ V   +Q ++ +L+ ++
Sbjct: 61  NLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAV 120

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           I GY      +EA+ ++  M    ++P  FT + + K  G +KDLN+G   H  + ++  
Sbjct: 121 IRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRG 180

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
              V + N+++ MYVKC        +FDEMP+R+V SW   I+ +A  G+         +
Sbjct: 181 FCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAE---L 237

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
           F+ +  +++ AWTAM+ G+ QN    EAL  F  M+ K  I  ++V++   +  C+ L G
Sbjct: 238 FESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRME-KSGIRADEVTVAGYISACAQL-G 295

Query: 273 LSG----GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            S       QI   +     +H V + +ALIDMYSKCG+++ A  VF  S  NK+  T+S
Sbjct: 296 ASKYADRAVQIAQKSGYSPSDH-VVIGSALIDMYSKCGNVEEAVNVFM-SMNNKNVFTYS 353

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           S++ G   HG+  EA+ L++ MV     KP+ +T VG L AC  SGL+++G ++++S+  
Sbjct: 354 SMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQ 413

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
           T+ ++PT +   C+VD+LGR G+L  AL+ IKTM VEP   +WGAL+ A  +H N E+ +
Sbjct: 414 TFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAE 473

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW-ISIHGK 506
           +A + L +LEP+   NY+ LSN+YAS+  W  V  +R ++K++GLKK+P  SW +  +G+
Sbjct: 474 IAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQ 533

Query: 507 THCFSVADKAHPCSVSIYEMLDDLI 531
            H F   +  HP S  I + L++L+
Sbjct: 534 MHKFFPGNLNHPMSNKIQDKLEELV 558



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 145/379 (38%), Gaps = 78/379 (20%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLG-----HISNPFVS---------------- 58
           S T    L+   T + L L +Q H+Q   L      ++ N  +                 
Sbjct: 149 SFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFD 208

Query: 59  ----------TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALEL 108
                     T+LI AYA  G    +  +F S+  KD+  + +++ G+ +N    EALE 
Sbjct: 209 EMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEY 268

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD--VILANSLMSMY 166
           F  M  S +  D+ T+A       ++           ++ K G+     V++ ++L+ MY
Sbjct: 269 FDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMY 328

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
            KCG   E +N+F  M  +N                                  V+ +++
Sbjct: 329 SKCGNVEEAVNVFMSMNNKN----------------------------------VFTYSS 354

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-----HG 281
           MI G   +G   EAL LF  M  +  I+PN V+ V  L  CS    +  G+Q+       
Sbjct: 355 MILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQT 414

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           F ++   +H       ++D+  + G L  A  + +  S       W +++    +H    
Sbjct: 415 FGVQPTRDH----YTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPE 470

Query: 342 EAVLLYNKMVCLGSKPDII 360
            A +    +  L  +PDII
Sbjct: 471 IAEIAAEHLFEL--EPDII 487



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 12/199 (6%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG-SLD-CARRVFE 316
           SL+S L  C   I L+  KQIHG  +RK L+    +   LI   +K G  +D  ARRV E
Sbjct: 51  SLISKLDDC---INLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIE 107

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
              F ++   W++++ GY + GK  EA+ +Y  M      P   T   +L ACG    +N
Sbjct: 108 PVQF-RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLN 166

Query: 377 EGLEIYNSVINTYRIKP--TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
            G + +     T+R++      +   ++DM  +   +D A      MP E     W  L+
Sbjct: 167 LGRQFH---AQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMP-ERDVISWTELI 222

Query: 435 SASVMHGNSEMQDLAYKSL 453
           +A    GN E     ++SL
Sbjct: 223 AAYARVGNMECAAELFESL 241


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 186/543 (34%), Positives = 285/543 (52%), Gaps = 69/543 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV-- 77
           S T    L+  A   S    KQ H+ +L LG +S+ F+ T LI  YA  G+   +QLV  
Sbjct: 129 SYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFD 188

Query: 78  -----------------------------FNSIQHKDVYLYNSLINGYVKNHGHNEALEL 108
                                        F+ +  KDV  +N++I GY +     EAL L
Sbjct: 189 QSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLL 248

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           F +M  +NV P++ T+ ++     +   L++G  +       G   ++ L N+L+ MY K
Sbjct: 249 FEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSK 308

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG       LFD+M +R+V SWNV                                  MI
Sbjct: 309 CGDLQTARELFDDMLERDVISWNV----------------------------------MI 334

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288
            GY       EAL LF EM L   +EP +++ +S+LP+C+ L  +  GK IH + I K  
Sbjct: 335 GGYTHMCSYKEALALFREM-LASGVEPTEITFLSILPSCAHLGAIDLGKWIHAY-INKNF 392

Query: 289 N-HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
           N    SL  +LID+Y+KCG++  AR+VF+     K   +W++++ G  +HG+  +A  L+
Sbjct: 393 NSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKI-KSLASWNAMICGLAMHGQADKAFELF 451

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
           +KM   G +P+ IT VG+LSAC  +GL++ G + ++S++  Y+I P ++   C++D+LGR
Sbjct: 452 SKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGR 511

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           AG  + A   ++ M V+P  +IWG+L+ A   HG  E+ +L  + L +LEP+NP  YV L
Sbjct: 512 AGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLL 571

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           SN+YA + +WD VA +RT + DRG+KK PGC+ I +    H F V DK HP S  IY ML
Sbjct: 572 SNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRML 631

Query: 528 DDL 530
           +++
Sbjct: 632 EEV 634



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 228/420 (54%), Gaps = 9/420 (2%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI--TAYALCGQPTQSQLVFNSIQHK 84
           L++ +  +S++  KQ H+ I+  G  +  F  +KLI  +A +  G  + +  +FNSI+  
Sbjct: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP 92

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           +++++NS+I G   +     AL  F  M YS V P+ +T   + K   ++   + G  IH
Sbjct: 93  NLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIH 152

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
              +K+GFV DV +  SL++MY + G+ +    +FD+   R+  S+   I+G+A  G   
Sbjct: 153 AHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWG--- 209

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
            + R+R++FD+M  ++V +W AMI GY Q G   EAL+LF +M+ K  + PN+ ++VSVL
Sbjct: 210 YMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMR-KANVPPNESTIVSVL 268

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             C+    L  G  +  +   + L  ++ L NALIDMYSKCG L  AR +F+D    +D 
Sbjct: 269 SACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDD-MLERDV 327

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           I+W+ ++ GY       EA+ L+ +M+  G +P  IT + +L +C   G I+ G  I+ +
Sbjct: 328 ISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIH-A 386

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            IN      +T +   ++D+  + G +  A      M ++   S W A++    MHG ++
Sbjct: 387 YINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLAS-WNAMICGLAMHGQAD 445


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 169/473 (35%), Positives = 266/473 (56%), Gaps = 4/473 (0%)

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
           P  + L    +   +V+ +NS+I    ++    EAL  FS+M   ++ P+  T     K 
Sbjct: 26  PNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKS 85

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
              + DL+ G   H  ++  GF  D+ ++++L+ MY KCG+  +   LFDE+  RN+ SW
Sbjct: 86  CSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSW 145

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
              I+G+  + D     R+ RVFD M  R+V +W ++I  Y QNG   E++ +F  M   
Sbjct: 146 TSMITGYVQNDDAH---RALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKD 202

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             I  N V+L +VL  C+       GK IH   I+  L  +V +  ++IDMY KCG ++ 
Sbjct: 203 GEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEM 262

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR+ F D    K+  +WS++V+GYG+HG   EA+ ++ +M   G KP+ IT V VL+AC 
Sbjct: 263 ARKAF-DRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS 321

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
            +GL+ EG   + ++ + + ++P  E   C+VD+LGRAG L  A D IK M + P   +W
Sbjct: 322 HAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVW 381

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
           GAL+ A  MH N ++ +++ + L +L+P+N   YV LSN+YA + RW+ V  +R +MK+ 
Sbjct: 382 GALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNS 441

Query: 491 GLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           GL K PG S + I G+ H F V D+ HP    IYE L+ L + ++     P +
Sbjct: 442 GLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDM 494



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 76/335 (22%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q+H Q L  G   + FVS+ L+  Y+ CG+   ++ +F+ I H+++  + S+I GYV+N
Sbjct: 96  RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 155

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISK--LSGE--------IKDLNV---------- 139
              + AL +F  M   +V   +  +A  ++  +S E        +KD  +          
Sbjct: 156 DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 215

Query: 140 ------------GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
                       G  IH   IK+G   +V +  S++ MY KCGK       FD M ++NV
Sbjct: 216 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 275

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
            SW                                  +AM+ GY  +G   EAL +F EM
Sbjct: 276 KSW----------------------------------SAMVAGYGMHGHAKEALEVFYEM 301

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMY 302
            +   ++PN ++ VSVL  CS    L  G        H F +   + H       ++D+ 
Sbjct: 302 NMAG-VKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEH----YGCMVDLL 356

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            + G L  A  + +      D + W +++    +H
Sbjct: 357 GRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMH 391



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 4/250 (1%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           NY + T+   L   A   S +L K  H Q++ +G  SN FV T +I  Y  CG+   ++ 
Sbjct: 206 NYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARK 265

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
            F+ ++ K+V  +++++ GY   HGH  EALE+F  M  + V P+  T  ++        
Sbjct: 266 AFDRMREKNVKSWSAMVAGY-GMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 324

Query: 136 DLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVR 193
            L  G      +S +      V     ++ +  + G   E  +L   M  R +   W   
Sbjct: 325 LLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGAL 384

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           +       +  L   S R   ++  +N   +  + N Y   G  ++   + + M+    +
Sbjct: 385 LGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLV 444

Query: 254 EPNKVSLVSV 263
           +P   SLV +
Sbjct: 445 KPPGFSLVDI 454


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 185/544 (34%), Positives = 290/544 (53%), Gaps = 59/544 (10%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           T+   L   +    L + K+ H+ +L     I N FV + L+  Y  C Q    + VF+ 
Sbjct: 299 TIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDH 358

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNV 139
           I  + + L+N++I+GY +N    +AL LF  M   + + P+  T+A++       +  + 
Sbjct: 359 ILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSN 418

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              IHG ++K+GF  D  + N+LM MY + GK      +FD M  R+  SWN  I+G+  
Sbjct: 419 KESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVL 478

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI------ 253
           SG +S                                   ALVL  EMQ  +        
Sbjct: 479 SGRYS----------------------------------NALVLLHEMQRMENTKDVKKD 504

Query: 254 ----------EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
                     +PN ++L++VLP C++L  ++ GK+IH +AIR  L  D+++ +AL+DMY+
Sbjct: 505 DNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYA 564

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-----SKPD 358
           KCG L+ +RRVF +   NK+ ITW+ ++   G+HGKG EA+ L+  MV        +KP+
Sbjct: 565 KCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPN 623

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            +T + V +AC  SGLI+EGL ++  + + + ++PT++  ACVVD+LGRAGQL+ A + +
Sbjct: 624 EVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELV 683

Query: 419 KTMPVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
            TMP E      W +L+ A  +H N E+ ++A K+L+ LEP   S+YV LSN+Y+S+  W
Sbjct: 684 NTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLW 743

Query: 478 DAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGA 537
           +   E+R  M+  G+KK PGCSWI    + H F   D +HP S  ++  L+ L   MR  
Sbjct: 744 NKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKE 803

Query: 538 AASP 541
              P
Sbjct: 804 GYVP 807



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 189/414 (45%), Gaps = 45/414 (10%)

Query: 34  RSLKLTKQSHSQILSLGHISNPF-VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL 92
           + LK  +Q H+  +  G+ S+   V+  L+  Y  CG       VF+ I  +D   +NS 
Sbjct: 106 QDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSF 165

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS---GEIKDLNVGMLIHGLSIK 149
           I    +     +ALE F  M   N+    FTL +++      G +  L +G  +HG S++
Sbjct: 166 IAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLR 225

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           +G        N+LM+MY K G+  +                                  S
Sbjct: 226 VG-DQKTFTNNALMAMYAKLGRVDD----------------------------------S 250

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           + +F+    R++ +W  MI+ + Q+    EAL  F  M L+  +E + V++ SVLP CS 
Sbjct: 251 KALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG-VELDGVTIASVLPACSH 309

Query: 270 LIGLSGGKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           L  L  GK+IH + +R  +L  +  + +AL+DMY  C  ++  RRVF D    +    W+
Sbjct: 310 LERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVF-DHILGRRIELWN 368

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +++SGY  +G   +A++L+ +M+ + G  P+  T+  V+ AC      +    I+   + 
Sbjct: 369 AMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVK 428

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
               K    +   ++DM  R G++D +     +M V    S W  +++  V+ G
Sbjct: 429 -LGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVS-WNTMITGYVLSG 480



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 175/367 (47%), Gaps = 48/367 (13%)

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-VVD 155
            +++   EA+  +  M  S   PD+F    + K    ++DL  G  IH  ++K G+    
Sbjct: 68  TRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSS 127

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V +AN+L++MY KCG                              GD        +VFD+
Sbjct: 128 VTVANTLVNMYGKCGGI----------------------------GDVC------KVFDR 153

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL---IG 272
           +  R+  +W + I    +    ++AL  F  MQ+++ +E +  +LVSV   CS+L    G
Sbjct: 154 ITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMEN-MELSSFTLVSVALACSNLGVMHG 212

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  GKQ+HG+++R   +      NAL+ MY+K G +D ++ +FE S  ++D ++W++++S
Sbjct: 213 LRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFE-SFVDRDMVSWNTMIS 270

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
            +    +  EA+  +  MV  G + D +TI  VL AC     ++ G EI+  V+    + 
Sbjct: 271 SFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLI 330

Query: 393 PTTEICACVVDMLGRAGQLD---RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
             + + + +VDM     Q++   R  D I    +E    +W A++S    +G  E   + 
Sbjct: 331 ENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIE----LWNAMISGYARNGLDEKALIL 386

Query: 450 YKSLIQL 456
           +  +I++
Sbjct: 387 FIEMIKV 393



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 114/243 (46%), Gaps = 10/243 (4%)

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           R+  +W   +    ++ D  EA+  ++EM +     P+  +  +VL   S L  L  G+Q
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSG-ARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 279 IHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           IH  A++    +  V++ N L++MY KCG +    +VF D   ++D ++W+S ++     
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVF-DRITDRDQVSWNSFIAALCRF 172

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK---PT 394
            K  +A+  +  M     +    T+V V  AC   G+++ GL +    ++ Y ++     
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMH-GLRL-GKQLHGYSLRVGDQK 230

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
           T     ++ M  + G++D +    ++  V+     W  ++S S    +   + LA+  L+
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALFESF-VDRDMVSWNTMIS-SFSQSDRFSEALAFFRLM 288

Query: 455 QLE 457
            LE
Sbjct: 289 VLE 291


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 184/551 (33%), Positives = 296/551 (53%), Gaps = 46/551 (8%)

Query: 1   MILSSARNTFALVT----------SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLG 50
           MI   A+N FA V                S T+   L   A  R L++    H  +L  G
Sbjct: 102 MISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAG 161

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
             S   VST L+  Y+ CG  + ++++F+ + H+ V  +NS+I+GYV++     A+ +F 
Sbjct: 162 FESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQ 221

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M    V P + T+        ++ DL  G  +H L  ++    DV + NSL+SMY KC 
Sbjct: 222 KMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCK 281

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
           +                                  V  +  +F  ++ + + +W AMI G
Sbjct: 282 R----------------------------------VDIAADIFKNLRNKTLVSWNAMILG 307

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           Y QNG ++EAL  F EMQ ++ I+P+  ++VSV+P  + L      K IHG  IR+ L+ 
Sbjct: 308 YAQNGCVNEALNAFCEMQSRN-IKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDK 366

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           +V +  AL+DMY+KCG++  AR++F D    +  ITW++++ GYG HG G  +V L+ +M
Sbjct: 367 NVFVMTALVDMYAKCGAIHTARKLF-DMMNARHVITWNAMIDGYGTHGLGKTSVELFKEM 425

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
                KP+ IT +  LSAC  SGL+ EGL  + S+   Y I+PT +    +VD+LGRAG+
Sbjct: 426 KKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGR 485

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           L++A DFI+ MP++P  +++GA++ A  +H N ++ + A   + +L P++   +V L+N+
Sbjct: 486 LNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANI 545

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YA++  W  VA++RT+M+  GL+K+PGCS + I  + H F     +HP S  IY  L+ L
Sbjct: 546 YATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETL 605

Query: 531 ILIMRGAAASP 541
           +  +R A   P
Sbjct: 606 VDEIRAAGYVP 616



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 221/473 (46%), Gaps = 40/473 (8%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           + L++   +  LK  K+ H  +++ G   N F  T ++  YA C Q   +  +F+ +  +
Sbjct: 35  YLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPER 94

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D+  +N++I+GY +N     AL L   M      PD  T+ +I     + + L +GM +H
Sbjct: 95  DLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVH 154

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
           G  ++ GF   V ++ +L+ MY KCG  S    +FD M  R V SWN  I G        
Sbjct: 155 GYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDG-------- 206

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
                                     YVQ+GD + A+++F +M L + ++P  V+++  L
Sbjct: 207 --------------------------YVQSGDAEGAMLIFQKM-LDEGVQPTNVTVMGAL 239

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             C+ L  L  GK +H    + +L+ DVS+ N+LI MYSKC  +D A  +F++   NK  
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLR-NKTL 298

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           ++W++++ GY  +G  +EA+  + +M     KPD  T+V V+ A     +  +   I+  
Sbjct: 299 VSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGL 358

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           VI  + +     +   +VDM  + G +  A      M      + W A++     HG  +
Sbjct: 359 VIRRF-LDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVIT-WNAMIDGYGTHGLGK 416

Query: 445 MQDLAYKSLIQ--LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
                +K + +  ++P + +   +LS    S    + +    +M KD G++ +
Sbjct: 417 TSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPT 469



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 170/350 (48%), Gaps = 38/350 (10%)

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           ++ GY K+   + AL  FS M + +V P  +    + KL G+  DL  G  IHG  I  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F  ++     +++MY KC + ++  N+FD MP+R++  WN  IS                
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMIS---------------- 104

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                             GY QNG    AL+L L M  ++   P+ +++VS+LP  +   
Sbjct: 105 ------------------GYAQNGFAKVALMLVLRMS-EEGHRPDSITIVSILPAVADTR 145

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  G  +HG+ +R      V++  AL+DMYSKCGS+  AR +F D   ++  ++W+S++
Sbjct: 146 LLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIF-DGMDHRTVVSWNSMI 204

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            GY   G    A+L++ KM+  G +P  +T++G L AC   G +  G +  + +++  ++
Sbjct: 205 DGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG-KFVHKLVDQLKL 263

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
                +   ++ M  +  ++D A D  K +  +   S W A++     +G
Sbjct: 264 DSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS-WNAMILGYAQNG 312



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 119/248 (47%), Gaps = 5/248 (2%)

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           M+ GY ++  LD AL  F  M+  D + P   +   +L  C     L  GK+IHG  I  
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMK-HDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITS 59

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
             + ++     +++MY+KC  ++ A  +F D    +D + W++++SGY  +G    A++L
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQINDAYNMF-DRMPERDLVCWNTMISGYAQNGFAKVALML 118

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
             +M   G +PD ITIV +L A   + L+  G+ ++  V+     +    +   +VDM  
Sbjct: 119 VLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRA-GFESLVNVSTALVDMYS 177

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466
           + G +  A      M      S W +++   V  G++E   L ++ ++  E   P+N   
Sbjct: 178 KCGSVSIARVIFDGMDHRTVVS-WNSMIDGYVQSGDAEGAMLIFQKMLD-EGVQPTNVTV 235

Query: 467 LSNLYASS 474
           +  L+A +
Sbjct: 236 MGALHACA 243


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 178/535 (33%), Positives = 299/535 (55%), Gaps = 24/535 (4%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC-----GQPTQSQLVFNSI 81
           L +  T +S+   KQ HS+ +  G I NP +  K+++    C     G    ++ +F++I
Sbjct: 18  LSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILS---FCCSREFGDMCYARQLFDTI 74

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
               V+ +N +  GY +       + L+  M   NV PD +T   + K       L +G 
Sbjct: 75  PEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGR 134

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH---- 197
            +H   +K G   +V   N+L++MY  CG       +FD   + +V +WN  ISG+    
Sbjct: 135 ELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIK 194

Query: 198 ----------ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
                         +   V  +R+ F +M  R+  +WTAMI+GY++     EAL+LF EM
Sbjct: 195 KDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREM 254

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
           Q   +I+P++ ++VSVL  C+ L  L  G+ I  +  + ++ +D  + NALIDMY KCG+
Sbjct: 255 Q-TSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGN 313

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           ++ A  +F ++   +D  TW+++V G  ++G G EA+ ++++M+     PD +T VGVLS
Sbjct: 314 VEMALSIF-NTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLS 372

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           AC  +G+++EG + + S+   + I+P      C+VD+LG+AG L  A + IK MP++P+ 
Sbjct: 373 ACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNS 432

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
            +WGAL+ A  +H ++EM + A + +++LEP N + YV   N+YA+  +WD + ELR +M
Sbjct: 433 IVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVM 492

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
            DRG+KK+PGCS I ++G  H F   D++HP +  IY  L+ +   ++ A  SP+
Sbjct: 493 MDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPN 547


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/494 (34%), Positives = 273/494 (55%), Gaps = 37/494 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   LQ       L+  K  H  +++ G+  +   S  LI  YA CG    SQ VF+ +
Sbjct: 377 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 436

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KD   +NS+IN Y++N   +EA++LF  M  ++V PD  T   +  +S ++ DL +G 
Sbjct: 437 KCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGK 495

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H    K+GF  +++++N+L+ MY KCG+  + L                         
Sbjct: 496 ELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSL------------------------- 530

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                    +VF+ MK R++  W  +I   V + D +  L +   M+  + + P+  +++
Sbjct: 531 ---------KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR-TEGVTPDMATML 580

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+LP CS L     GK+IHG   +  L  DV + N LI+MYSKCGSL  + +VF+     
Sbjct: 581 SILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK-T 639

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD +TW++++S  G++G+G +AV  + +M   G  PD +  V ++ AC  SGL+ EGL  
Sbjct: 640 KDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNY 699

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++ +   Y+I+P  E  ACVVD+L R+  LD+A DFI +MP++P  SIWGAL+SA  M G
Sbjct: 700 FHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSG 759

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           ++E+     + +I+L P++   YV +SN+YA+  +WD V  +R  +K RGLKK PGCSW+
Sbjct: 760 DTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWM 819

Query: 502 SIHGKTHCFSVADK 515
            I  K + F    K
Sbjct: 820 EIQNKVYVFGTGTK 833



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 207/424 (48%), Gaps = 43/424 (10%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
            ++ K  H ++L +G  S+ ++   LI  Y       +++ VF  +  +DV  +NSLI+G
Sbjct: 190 FEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 249

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y  N   NEALE++       V PD +T++++ +  G +  +  G +IHGL  KIG   D
Sbjct: 250 YNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKD 309

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           VI+ N L+SMY K     +   +FD+M  R+  SWN                        
Sbjct: 310 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWN------------------------ 345

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                      MI GY Q G  +E++ LF+EM   ++ +P+ +++ S+L  C  L  L  
Sbjct: 346 ----------TMICGYSQVGLYEESIKLFMEMV--NQFKPDLLTITSILQACGHLGDLEF 393

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK +H + I      D +  N LI+MY+KCG+L  ++ VF      KD+++W+S+++ Y 
Sbjct: 394 GKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC-KDSVSWNSMINVYI 452

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            +G   EA+ L+ KM+    KPD +T V +LS   + G +  G E++  +          
Sbjct: 453 QNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKM-GFNSNI 510

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            +   +VDM  + G++  +L   + M      + W  ++++ V   +SE  +L  + + +
Sbjct: 511 VVSNTLVDMYAKCGEMGDSLKVFENMKARDIIT-WNTIIASCV---HSEDCNLGLRMISR 566

Query: 456 LEPE 459
           +  E
Sbjct: 567 MRTE 570



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 199/429 (46%), Gaps = 43/429 (10%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           SR    +++   L  +AT   L    + HS I++LG   +   S KLI  YA    PT S
Sbjct: 70  SRQTLFSSISRALASAATTTQLH---KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSS 126

Query: 75  QLVFN-SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
             VF  +    +VY +NS+I     N   +EAL L+S      + PD +T  ++      
Sbjct: 127 FSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAG 186

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           + D  +   IH   + +GF  D+ + N+L+ MY +     +   +F+EMP R+V SWN  
Sbjct: 187 LLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWN-- 244

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                                           ++I+GY  NG  +EAL ++   +    +
Sbjct: 245 --------------------------------SLISGYNANGYWNEALEIYYRFR-NLGV 271

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
            P+  ++ SVL  C  L  +  G  IHG   +  +  DV + N L+ MY K   L   RR
Sbjct: 272 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 331

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           +F D    +DA++W++++ GY   G   E++ L+ +MV    KPD++TI  +L ACG  G
Sbjct: 332 IF-DKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLG 389

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            +  G  +++ +I T   +  T     +++M  + G L  + +    M  + S S W ++
Sbjct: 390 DLEFGKYVHDYMI-TSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSM 447

Query: 434 VSASVMHGN 442
           ++  + +G+
Sbjct: 448 INVYIQNGS 456



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 147/345 (42%), Gaps = 12/345 (3%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L +S     L L K+ H  +  +G  SN  VS  L+  YA CG+   S  VF 
Sbjct: 475 SVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFE 534

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           +++ +D+  +N++I   V +   N  L + S M    V+PD  T+ +I  +   +     
Sbjct: 535 NMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQ 594

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IHG   K+G   DV + N L+ MY KCG       +F  M  ++V +W   IS    
Sbjct: 595 GKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGM 654

Query: 200 SGDFSLVVRSRRVFDQMKRRNV----YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
            G+    VR+   F +M+   +     A+ A+I     +G ++E L  F  M+   +IEP
Sbjct: 655 YGEGKKAVRA---FGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEP 711

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
                  V+   S    L   +    F +   L  D S+  AL+      G  + A+RV 
Sbjct: 712 RIEHYACVVDLLSRSALLDKAED---FILSMPLKPDSSIWGALLSACRMSGDTEIAQRVS 768

Query: 316 ED-SSFNKDAITWSSIVSG-YGLHGKGHEAVLLYNKMVCLGSKPD 358
           E     N D   +  +VS  Y   GK  +   +   +   G K D
Sbjct: 769 ERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKD 813


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/481 (35%), Positives = 279/481 (58%), Gaps = 21/481 (4%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP- 119
           L++ Y   G+ ++++ +F+ +  +DV  +N +++GY +     EA  LF      + +P 
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF------DAAPV 252

Query: 120 -DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILANSLMSMYVKCGKFSECLN 177
            D FT   +  +SG  ++   GML     +       + +  N++++ Y++     E   
Sbjct: 253 RDVFTWTAV--VSGYAQN---GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKE 307

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           LF+ MP RNV SWN  ++G+A +G   ++  ++ VFD M +++  +W AM+  Y Q G  
Sbjct: 308 LFNMMPCRNVASWNTMLTGYAQAG---MLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364

Query: 238 DEALVLFLEM-QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
           +E L LF+EM +  + +  N+ +   VL TC+ +  L  G Q+HG  IR        + N
Sbjct: 365 EETLQLFIEMGRCGEWV--NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGN 422

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           AL+ MY KCG+++ AR  FE+    +D ++W+++++GY  HG G EA+ +++ M    +K
Sbjct: 423 ALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTK 481

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD IT+VGVL+AC  SGL+ +G+  + S+ + + +    E   C++D+LGRAG+L  A D
Sbjct: 482 PDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHD 541

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
            +K MP EP  ++WGAL+ AS +H N E+   A + + +LEPEN   YV LSN+YASS +
Sbjct: 542 LMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGK 601

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRG 536
           W    ++R MM++RG+KK PG SWI +  K H FS  D  HP    IY  L+DL + M+ 
Sbjct: 602 WRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKK 661

Query: 537 A 537
           A
Sbjct: 662 A 662



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 190/407 (46%), Gaps = 44/407 (10%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM-------- 112
           ++  Y+  G+   +  +F +I   D Y YN+L++    +    +A  LF  M        
Sbjct: 75  MLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTY 134

Query: 113 -----------------YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
                            +Y +++P+   ++    L+  +++  V       + +  +  D
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW--D 192

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
            I  N+LMS YV+ GK SE   LFD MP R+V SWN+ +SG+A  GD   +V +RR+FD 
Sbjct: 193 AISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGD---MVEARRLFDA 249

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
              R+V+ WTA+++GY QNG L+EA  +F  M      E N VS  +++        +  
Sbjct: 250 APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-----ERNAVSWNAMVAAYIQRRMMDE 304

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
            K++      +    +V+  N ++  Y++ G L+ A+ VF D+   KDA++W+++++ Y 
Sbjct: 305 AKELFNMMPCR----NVASWNTMLTGYAQAGMLEEAKAVF-DTMPQKDAVSWAAMLAAYS 359

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT-YRIKPT 394
             G   E + L+ +M   G   +      VLS C     +  G++++  +I   Y +   
Sbjct: 360 QGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV--G 417

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             +   ++ M  + G ++ A +  + M  E     W  +++    HG
Sbjct: 418 CFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 130/304 (42%), Gaps = 30/304 (9%)

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           N  I+ H  +G    V  + R+F  M RR+   + AM+ GY  NG L  A  LF  +   
Sbjct: 42  NKAITAHMRAGR---VADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP 98

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           D    N  +L+  L   SSL    G        +R  + ++V     +I  ++  G +  
Sbjct: 99  DNYSYN--TLLHALAVSSSLADARG--LFDEMPVRDSVTYNV-----MISSHANHGLVSL 149

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR  F D +  KDA++W+ +++ Y  +G+  EA  L+N      ++ D I+   ++S   
Sbjct: 150 ARHYF-DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR----TEWDAISWNALMSGYV 204

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
           + G ++E  E+++ +       P  ++ +   +V    R G +  A       PV     
Sbjct: 205 QWGKMSEARELFDRM-------PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR-DVF 256

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
            W A+VS    +G   M + A +    +   N  ++ ++   Y   R  D   EL  MM 
Sbjct: 257 TWTAVVSGYAQNG---MLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 489 DRGL 492
            R +
Sbjct: 314 CRNV 317



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+   Q H +++  G+    FV   L+  Y  CG    ++  F  ++ +DV  +N++I 
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 457

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFV 153
           GY ++    EALE+F  M  ++  PDD TL  +         +  G+   + +    G  
Sbjct: 458 GYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVT 517

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMP 183
                   ++ +  + G+ +E  +L  +MP
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 547


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 179/544 (32%), Positives = 291/544 (53%), Gaps = 49/544 (9%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           S  L K  H  +L +G  S+  V  +LI  YA  G+   ++ +F+ +  +    +N++++
Sbjct: 57  SFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVS 116

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFT------------------------------- 123
            Y  N+  N ALE+F  M    + P+  T                               
Sbjct: 117 AYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEV 176

Query: 124 ----LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
               LA +  +  ++       +IH  ++K GF     + ++L+ +Y K G  +   NLF
Sbjct: 177 SGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLF 236

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR--------NVYAWTAMINGY 231
            EM  +++ SWN  I+ HA +G   L   +  +F Q++R         NV +W+A+I+G+
Sbjct: 237 LEMKNKSLASWNALITSHAEAG---LCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGF 293

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
              G   EAL LF  MQ   +I  N V++ +VL  C+ L  L  G++IHG  +R  + ++
Sbjct: 294 ASKGREKEALELFRRMQ-HAKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNN 352

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           + + N L++MY+KCG L     +FE +   KD I+W+S+++GYG+HG G  A+  +++M+
Sbjct: 353 ILVGNGLVNMYAKCGCLKEGHMIFEKTE-RKDLISWNSMITGYGMHGLGMNALETFDQMI 411

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
            LG KPD +T V VLS+C  SGL++EG  +++ ++  YRI+P  E  AC+VD+LGRAG L
Sbjct: 412 KLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLL 471

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL-EPENPSNYVSLSNL 470
             A + +K MPV P+  +WGAL+++  MH N+E+ +     L  L   E    Y+ LSN+
Sbjct: 472 REASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAEETASHLFNLSHRETTGTYMLLSNI 531

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YA+S RW+  A +RT  K +GLKK+PG SWI +    + FS  +        I+E+L++L
Sbjct: 532 YAASGRWEDSARVRTSAKTKGLKKNPGQSWIKVEKNVYTFSAGNNMQRGFEQIFEILEEL 591

Query: 531 ILIM 534
              M
Sbjct: 592 TFQM 595



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 163/366 (44%), Gaps = 52/366 (14%)

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D FT   + +    +    +G  IHG  +++GF   + + N L+ MY K G+  +  +LF
Sbjct: 41  DGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLF 100

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWTAMINGYVQNG 235
           D M  R+  SWN  +S +A + D +  +    +F +M+      N+  WT++I+ Y ++G
Sbjct: 101 DRMSVRSYISWNTMVSAYAFNYDCNGAL---EIFQRMESEGMEPNLVTWTSLISSYARSG 157

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL------- 288
             +EA+ LF  M++K  +E +  +L  V+  C+ L      K IH +A++          
Sbjct: 158 WHEEAMELFGLMRMKG-VEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVK 216

Query: 289 ------------------------NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD- 323
                                   N  ++  NALI  +++ G  D A  +F     + D 
Sbjct: 217 SALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDC 276

Query: 324 ------AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
                  ++WS+I+ G+   G+  EA+ L+ +M       + +TI  VLS C     ++ 
Sbjct: 277 PRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHL 336

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA-LDFIKTMPVEPSPSI-WGALVS 435
           G EI+  V+    +     +   +V+M  + G L    + F KT   E    I W ++++
Sbjct: 337 GREIHGHVVRAVMVNNIL-VGNGLVNMYAKCGCLKEGHMIFEKT---ERKDLISWNSMIT 392

Query: 436 ASVMHG 441
              MHG
Sbjct: 393 GYGMHG 398



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 49/108 (45%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L + A   +L L ++ H  ++    ++N  V   L+  YA CG   +  ++F 
Sbjct: 318 AVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFE 377

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
             + KD+  +NS+I GY  +     ALE F  M      PD  T   +
Sbjct: 378 KTERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAV 425


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/496 (34%), Positives = 271/496 (54%), Gaps = 36/496 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L L +Q H+Q++  G   N +V + LI  YA  G+   ++ +   ++ +DV  + ++I 
Sbjct: 430 ALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIA 489

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY ++    EAL+LF  M    +  D+   ++       I+ LN G  IH  S   G+  
Sbjct: 490 GYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSE 549

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+ + N+L+S+Y +CG+  +                                  +   F+
Sbjct: 550 DLSIGNALVSLYARCGRAQD----------------------------------AYLAFE 575

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           ++  ++  +W A+I+G+ Q+G  +EAL +F +M  +  +E N  +  S +   ++   + 
Sbjct: 576 KIDAKDNISWNALISGFAQSGHCEEALQVFSQMN-QAGVEANLFTFGSAVSATANTANIK 634

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GKQIH   I+   + +    N LI +YSKCGS++ A+R F +    K+ ++W+++++GY
Sbjct: 635 QGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGY 693

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG G EAV L+ +M  LG  P+ +T VGVLSAC   GL+NEGL  + S+   + + P 
Sbjct: 694 SQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPK 753

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   CVVD+LGRA  L  A +FI+ MP+EP   IW  L+SA  +H N E+ + A + L+
Sbjct: 754 PEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLL 813

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEPE+ + YV LSN+YA S +WD     R MMKDRG+KK PG SWI +    H F V D
Sbjct: 814 ELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGD 873

Query: 515 KAHPCSVSIYEMLDDL 530
           + HP +  IYE +DDL
Sbjct: 874 RLHPLAEQIYEYIDDL 889



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 218/481 (45%), Gaps = 41/481 (8%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
            KL +Q H  I+  G  S  FV   L+T Y+  G    ++ +F+ +  +D   YNSLI+G
Sbjct: 229 FKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISG 288

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
             +    + AL+LF  M    + PD  T+A++      +     G  +H   IK+G   D
Sbjct: 289 LAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSD 348

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           +I+  SL+ +YVKC         FD                         +  +   F  
Sbjct: 349 LIIEGSLLDLYVKC---------FD-------------------------IETAHEYFLT 374

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
            +  NV  W  M+  Y Q G+L E+  +FL+MQ++  + PN+ +  S+L TC+SL  L  
Sbjct: 375 TETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEG-LMPNQYTYPSILRTCTSLGALDL 433

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+QIH   I+     +V +C+ LIDMY+K G LD AR + +     +D ++W+++++GY 
Sbjct: 434 GEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYT 492

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY-NSVINTYRIKPT 394
            H    EA+ L+ +M   G + D I     +SAC     +N+G +I+  S I+ Y     
Sbjct: 493 QHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGY--SED 550

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
             I   +V +  R G+   A    + +  + + S W AL+S     G+ E     +  + 
Sbjct: 551 LSIGNALVSLYARCGRAQDAYLAFEKIDAKDNIS-WNALISGFAQSGHCEEALQVFSQMN 609

Query: 455 QLEPE-NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           Q   E N   + S  +  A++       ++  MM   G       S + I   + C S+ 
Sbjct: 610 QAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIE 669

Query: 514 D 514
           D
Sbjct: 670 D 670



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 211/434 (48%), Gaps = 41/434 (9%)

Query: 10  FALVTSRNYT--SATVQHFLQVSATHRS-LKLTKQSHSQILSLGHISNPFVSTKLITAYA 66
           F+L+ + N T   +T    L+  +  ++  ++T+Q H++I+  G  S+P V   LI  Y+
Sbjct: 99  FSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYS 158

Query: 67  LCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
             G    ++LVF  +  KD   + ++I+G  +N   +EA+ LF  M+ S V P  +  ++
Sbjct: 159 KNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSS 218

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +     +I+   +G  +HG  +K G   +  + N+L+++Y + G       +F +M +R+
Sbjct: 219 VLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRD 278

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
             S+N  ISG A                                  Q G  D AL LF +
Sbjct: 279 RISYNSLISGLA----------------------------------QRGFSDRALQLFEK 304

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           MQL D ++P+ V++ S+L  C+S+     GKQ+H + I+  ++ D+ +  +L+D+Y KC 
Sbjct: 305 MQL-DCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCF 363

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
            ++ A   F  +   ++ + W+ ++  YG  G   E+  ++ +M   G  P+  T   +L
Sbjct: 364 DIETAHEYFLTTE-TENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSIL 422

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
             C   G ++ G +I+  VI +   +    +C+ ++DM  + G+LD A   ++ +  E  
Sbjct: 423 RTCTSLGALDLGEQIHTQVIKS-GFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDV 481

Query: 427 PSIWGALVSASVMH 440
            S W A+++    H
Sbjct: 482 VS-WTAMIAGYTQH 494



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 207/434 (47%), Gaps = 46/434 (10%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SL   K+ H++I   G      + ++LI  Y   G+   +  +F+ I   +V  +N +I+
Sbjct: 25  SLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVIS 84

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK-LSGEIKDLNVGMLIHGLSIKIGFV 153
           G +     ++ L LFS M   NV+PD+ T A++ +  SG      V   IH   I  GF 
Sbjct: 85  GLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFG 144

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
              ++ N L+ +Y K                          +GH        V  ++ VF
Sbjct: 145 SSPLVCNPLIDLYSK--------------------------NGH--------VDLAKLVF 170

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           +++  ++  +W AMI+G  QNG  DEA++LF +M  K  + P      SVL  C+ +   
Sbjct: 171 ERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMH-KSAVIPTPYVFSSVLSACTKIELF 229

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             G+Q+HGF ++  L+ +  +CNAL+ +YS+ G+L  A ++F      +D I+++S++SG
Sbjct: 230 KLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIF-SKMHRRDRISYNSLISG 288

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
               G    A+ L+ KM     KPD +T+  +LSAC   G   +G ++++ VI    +  
Sbjct: 289 LAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKM-GMSS 347

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQDLAYKS 452
              I   ++D+  +   ++ A ++  T   E +  +W  ++ A    GN SE    +Y  
Sbjct: 348 DLIIEGSLLDLYVKCFDIETAHEYFLTTETE-NVVLWNVMLVAYGQLGNLSE----SYWI 402

Query: 453 LIQLEPEN--PSNY 464
            +Q++ E   P+ Y
Sbjct: 403 FLQMQIEGLMPNQY 416



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 143/311 (45%), Gaps = 48/311 (15%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           ++L   +Q H+Q    G+  +  +   L++ YA CG+   + L F  I  KD   +N+LI
Sbjct: 530 QALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALI 589

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +G+ ++    EAL++FS M  + V  + FT  +    +    ++  G  IH + IK G+ 
Sbjct: 590 SGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYD 649

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +   +N L+++Y KCG   +    F EMP++NV SWN  I+G                 
Sbjct: 650 SETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITG----------------- 692

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL--- 270
                            Y Q+G   EA+ LF EM+ +  + PN V+ V VL  CS +   
Sbjct: 693 -----------------YSQHGYGSEAVSLFEEMK-QLGLMPNHVTFVGVLSACSHVGLV 734

Query: 271 -IGLSGGKQI---HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
             GLS  + +   HG   + E  H V     ++D+  +   L CAR   E+     DA+ 
Sbjct: 735 NEGLSYFRSMSKEHGLVPKPE--HYV----CVVDLLGRAALLCCAREFIEEMPIEPDAMI 788

Query: 327 WSSIVSGYGLH 337
           W +++S   +H
Sbjct: 789 WRTLLSACTVH 799



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 7/225 (3%)

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           I  N  + + +   C +   L   K++H    +   + +  L + LID+Y   G +D A 
Sbjct: 6   IRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAI 65

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           ++F+D   + +   W+ ++SG        + + L++ M+     PD  T   VL AC   
Sbjct: 66  KLFDDIP-SSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
               +  E  ++ I  +    +  +C  ++D+  + G +D A    + + ++ S S W A
Sbjct: 125 KAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS-WVA 183

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLSNLYASSR 475
           ++S    +G    +D A     Q+      P+ YV  S L A ++
Sbjct: 184 MISGLSQNGR---EDEAILLFCQMHKSAVIPTPYVFSSVLSACTK 225


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/522 (32%), Positives = 281/522 (53%), Gaps = 67/522 (12%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING-- 95
           L +Q H QIL LG   N FV + L+  YA  G    ++ VF+ +  K+V +YN++I G  
Sbjct: 158 LGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLL 217

Query: 96  -----------------------------YVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
                                        + +N   ++AL  F  M +  ++ D +T  +
Sbjct: 218 RCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGS 277

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           I    G +  L  G  IH   I+  +  +V + ++L+ MY KC               R+
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKC---------------RS 322

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           +                     +   F +M  +N+ +WTA+I GY QNG  +EA+ +F E
Sbjct: 323 IKP-------------------AETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSE 363

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           MQ +D I+P+  +L SV+ +C++L  L  G Q H  A+   L H +++ NAL+ +Y KCG
Sbjct: 364 MQ-RDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCG 422

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
           S++ A R+F++  F+ D ++W+++V+GY   G+  E + L+ KM+    KPD +T +GVL
Sbjct: 423 SIEDAHRLFDEMLFH-DQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVL 481

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           SAC R+G + +G   ++S+   + I P  +   C++D+  R+G+L  A +FIK MP+ P 
Sbjct: 482 SACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPD 541

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486
              WG L+SA  + G+ E+   A ++L++++P+NP++YV L +++A+   W+ VA+LR  
Sbjct: 542 AIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRG 601

Query: 487 MKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
           M+DR +KK PGCSWI    K H FS  D++HP S  IYE L+
Sbjct: 602 MRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLE 643



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 213/451 (47%), Gaps = 27/451 (5%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY--SNVSPDDFTLATISKLSGEI 134
           +F S+  +D   YN++I G+     H  A+ L+  +    S+V P   T++ +   +  +
Sbjct: 94  LFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASAL 153

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
            D  +G   H   +++GF V+  + + L+ MY K G   +   +FDEM  +NV  +N  I
Sbjct: 154 GDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMI 213

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           +G        +V  +RR+F+ M  R+   WT M+ G+ QNG   +AL  F  M+ +  I 
Sbjct: 214 TGLLRC---KMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQG-IA 269

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
            ++ +  S+L  C +L  L  GKQIH + IR   + +V + +AL+DMYSKC S+  A   
Sbjct: 270 IDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETA 329

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F   S  K+ I+W++++ GYG +G   EAV ++++M   G  PD  T+  V+S+C     
Sbjct: 330 FRRMSC-KNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLAS 388

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           + EG + +   + +  +   T +   +V + G+ G ++ A      M      S W ALV
Sbjct: 389 LEEGAQFHCLALVSGLMHYIT-VSNALVTLYGKCGSIEDAHRLFDEMLFHDQVS-WTALV 446

Query: 435 SASVMHGNS-EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           +     G + E  DL  K L +     P     +  L A SR               G  
Sbjct: 447 TGYAQFGRAKETIDLFEKMLAK--DVKPDGVTFIGVLSACSR--------------AGFV 490

Query: 494 KSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           +  GCS+     K H     D  + C + +Y
Sbjct: 491 EK-GCSYFHSMQKDHGIVPIDDHYTCMIDLY 520



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 144/338 (42%), Gaps = 49/338 (14%)

Query: 7   RNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYA 66
           R  F  +    YT  ++   L       +L+  KQ H+ I+   +  N FV + L+  Y+
Sbjct: 262 RMRFQGIAIDQYTFGSI---LTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYS 318

Query: 67  LCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
            C     ++  F  +  K++  + +LI GY +N    EA+ +FS M    + PDDFTL +
Sbjct: 319 KCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGS 378

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +      +  L  G   H L++  G +  + ++N+L+++Y KCG   +   LFDEM   +
Sbjct: 379 VISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHD 438

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
             SW                                  TA++ GY Q G   E + LF +
Sbjct: 439 QVSW----------------------------------TALVTGYAQFGRAKETIDLFEK 464

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC------NALID 300
           M  KD ++P+ V+ + VL  CS       G    G +    +  D  +         +ID
Sbjct: 465 MLAKD-VKPDGVTFIGVLSACS-----RAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMID 518

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +YS+ G L  A    +    + DAI W +++S   L G
Sbjct: 519 LYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRG 556



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 154/339 (45%), Gaps = 37/339 (10%)

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           L N L++ Y K G+ +    +FD  P  N+ ++N  +S  A +    L+     +F  M 
Sbjct: 43  LLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHA---RLLDDMDSLFASMA 99

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLE-MQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           +R+  ++ A+I G+   G    A+ L+   ++    + P+++++ +++   S+L   + G
Sbjct: 100 QRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALG 159

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS----------------- 319
           +Q H   +R     +  + + L+ MY+K G +  A+RVF++                   
Sbjct: 160 RQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRC 219

Query: 320 -------------FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
                         ++D ITW+++V+G+  +G   +A+  + +M   G   D  T   +L
Sbjct: 220 KMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSIL 279

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           +ACG    + +G +I+  +I T+       + + +VDM  +   +  A    + M  +  
Sbjct: 280 TACGALSALEQGKQIHAYIIRTH-YDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNI 338

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
            S W AL+     +G SE + +   S +Q +  +P ++ 
Sbjct: 339 IS-WTALIVGYGQNGCSE-EAVRVFSEMQRDGIDPDDFT 375



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SL+   Q H   L  G +    VS  L+T Y  CG    +  +F+ +   D   + +L+ 
Sbjct: 388 SLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVT 447

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFV 153
           GY +     E ++LF  M   +V PD  T   +         +  G    H +    G V
Sbjct: 448 GYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIV 507

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVRSRRV 212
                   ++ +Y + G+  E      +MP   +   W   +S     GD  +   +   
Sbjct: 508 PIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAEN 567

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
             ++  +N  ++  + + +   G+ ++  V  L   ++DR
Sbjct: 568 LLEIDPQNPASYVLLCSMHATKGNWNQ--VAQLRRGMRDR 605


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/509 (33%), Positives = 280/509 (55%), Gaps = 36/509 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+   +  +L L +Q H+Q++  G   N +V + LI  YA  G+   + ++  ++
Sbjct: 417 TYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL 476

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
              DV  + +LI+GY +++   EAL+ F  M    +  D+   ++       I+ LN G 
Sbjct: 477 TEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGR 536

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH  S   G+  D+ + N+L+S+Y +CG+  E                           
Sbjct: 537 QIHAQSYVSGYSEDLSIGNALVSLYARCGRIKE--------------------------- 569

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  +   F+++  ++  +W  +I+G+ Q+G  ++AL +F +M  + ++E +  +  
Sbjct: 570 -------AYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMN-RAKLEASFFTFG 621

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S +   +++  +  GKQIH   I++  + D+ + NALI  Y+KCGS++ ARR F +    
Sbjct: 622 SAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMP-E 680

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K+ ++W+++++GY  HG G+EAV L+ KM  +G  P+ +T VGVLSAC   GL+ +GL  
Sbjct: 681 KNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGY 740

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + S+   + + P     ACVVD++ RAG L RA  FI+ MP+EP  +IW  L+SA  +H 
Sbjct: 741 FESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHK 800

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ + A + L++LEPE+ + YV LSN+YA S +WD   + R MM++RG+KK PG SWI
Sbjct: 801 NVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWI 860

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            +    H F V D+ HP +  IYE L +L
Sbjct: 861 EVKNSVHAFYVGDRLHPLADKIYEFLAEL 889



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 204/423 (48%), Gaps = 39/423 (9%)

Query: 19  TSATVQHFLQVSATHR-SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           T  +    L+  + HR  ++  +Q H++I+  G + +P +S  LI  YA  G    ++ V
Sbjct: 110 TEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKV 169

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F+++  KD   + ++I+G+ +N    EA+ LF  M+ + + P  +  +++     +IK  
Sbjct: 170 FDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLF 229

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
           +VG  +H L  K G  ++  + N+L+++Y +   F     +F +M  ++  S+N  ISG 
Sbjct: 230 DVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGL 289

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A                                  Q G  D AL LF +M+ +D ++P+ 
Sbjct: 290 A----------------------------------QQGFSDGALELFTKMK-RDYLKPDC 314

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           V++ S+L  C+S   L  G+Q+H + I+  ++ D+ +  AL+D+Y  C  +  A  +F  
Sbjct: 315 VTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLT 374

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
           +   ++ + W+ ++  +G      E+  ++ +M   G  P+  T   +L  C   G ++ 
Sbjct: 375 AQ-TENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDL 433

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G +I+  VI T   +    +C+ ++DM  + G+LD A   ++T+  +   S W AL+S  
Sbjct: 434 GEQIHTQVIKT-GFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVS-WTALISGY 491

Query: 438 VMH 440
             H
Sbjct: 492 AQH 494



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 187/407 (45%), Gaps = 42/407 (10%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H+ +   G     +V   L+T Y+       ++ VF+ +Q KD   +NSLI+G  + 
Sbjct: 233 EQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQ 292

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
              + ALELF+ M    + PD  T+A++         L  G  +H   IK G   D+I+ 
Sbjct: 293 GFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVE 352

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
            +L+ +YV C                                  S +  +  +F   +  
Sbjct: 353 GALLDLYVNC----------------------------------SDIKTAHEMFLTAQTE 378

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV  W  M+  + +  +L E+  +F +MQ+K  I PN+ +  S+L TC+S+  L  G+QI
Sbjct: 379 NVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLI-PNQFTYPSILRTCTSVGALDLGEQI 437

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H   I+     +V +C+ LIDMY+K G LD A  +    +   D ++W++++SGY  H  
Sbjct: 438 HTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALISGYAQHNL 496

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY-NSVINTYRIKPTTEIC 398
             EA+  + +M+  G + D I     +SAC     +N+G +I+  S ++ Y       I 
Sbjct: 497 FAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGY--SEDLSIG 554

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSE 444
             +V +  R G++  A  +++   ++   SI W  L+S     G  E
Sbjct: 555 NALVSLYARCGRIKEA--YLEFEKIDAKDSISWNGLISGFAQSGYCE 599



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 170/355 (47%), Gaps = 37/355 (10%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SL   K+ H +IL LG  +   +  KL+  Y   G       VF  + ++ V  ++ +I+
Sbjct: 25  SLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIIS 84

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK-LSGEIKDLNVGMLIHGLSIKIGFV 153
           G+++    N  L+LFS M   NVSP + + A++ +  SG    +     IH   I  G +
Sbjct: 85  GFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLL 144

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
              I++N L+ +Y K G                                  L++ +R+VF
Sbjct: 145 CSPIISNPLIGLYAKNG----------------------------------LIISARKVF 170

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D +  ++  +W AMI+G+ QNG  +EA+ LF EM     I P      SVL  C+ +   
Sbjct: 171 DNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAG-IFPTPYVFSSVLSGCTKIKLF 229

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             G+Q+H    +   + +  +CNAL+ +YS+  +   A +VF     +KD ++++S++SG
Sbjct: 230 DVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQ-SKDEVSFNSLISG 288

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
               G    A+ L+ KM     KPD +T+  +LSAC  +G + +G ++++ VI  
Sbjct: 289 LAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKA 343



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           I  N  + + +L  C +   L   K++HG  ++    ++  LCN L+D+Y   G LD   
Sbjct: 6   ICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVV 65

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
           +VFED   N+   +W  I+SG+      +  + L++ M+     P  I+   VL AC
Sbjct: 66  KVFEDMP-NRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRAC 121


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 187/584 (32%), Positives = 299/584 (51%), Gaps = 69/584 (11%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           + LQ+S  +  L+  ++ H  +++ G  SN F  T ++  YA C Q   +  +F  +  +
Sbjct: 147 YLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQR 206

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D+  +N+++ GY +N     A+++   M  +   PD  TL ++     ++K L +G  IH
Sbjct: 207 DLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIH 266

Query: 145 GLSIKIGFVVDVILANSLMSMYVKC-------------------------------GKFS 173
           G + + GF   V +A +++  Y KC                               G+  
Sbjct: 267 GYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESE 326

Query: 174 ECLNLFDEMPQRNVGSWNVRISG--HASS--GDF-------------------------- 203
           E    F +M    V   NV + G  HA +  GD                           
Sbjct: 327 EAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLI 386

Query: 204 SLVVRSRRV------FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           S+  + +RV      F  +K + V  W AMI GY QNG ++EAL LF EMQ  D I+P+ 
Sbjct: 387 SMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHD-IKPDS 445

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            +LVSV+   + L      K IHG AIR  ++ +V +C ALID ++KCG++  AR++F D
Sbjct: 446 FTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLF-D 504

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               +  ITW++++ GYG +G G EA+ L+N+M     KP+ IT + V++AC  SGL+ E
Sbjct: 505 LMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEE 564

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G+  + S+   Y ++PT +    +VD+LGRAG+LD A  FI+ MPV+P  ++ GA++ A 
Sbjct: 565 GMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGAC 624

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
            +H N E+ +     L  L+P++   +V L+N+YAS+  WD VA +RT M+ +G++K+PG
Sbjct: 625 RIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPG 684

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           CS + +  + H F      HP S  IY  L+ L   M+ A   P
Sbjct: 685 CSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVP 728



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 197/407 (48%), Gaps = 38/407 (9%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SLK   Q    I+  G  +     TKLI+ +      T++  VF  ++HK   LY++++ 
Sbjct: 56  SLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLK 115

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY KN    +A+  +  M    V P  +    + +LSGE  DL  G  IHG+ I  GF  
Sbjct: 116 GYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQS 175

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           ++    +++++Y KC +  +   +F+ MPQR++ SWN  ++G                  
Sbjct: 176 NLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAG------------------ 217

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                           Y QNG    A+ + L+MQ   + +P+ ++LVSVLP  + L  L 
Sbjct: 218 ----------------YAQNGFARRAVQVVLQMQEAGQ-KPDSITLVSVLPAVADLKALR 260

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+ IHG+A R    + V++  A++D Y KCGS+  AR VF+  S +++ ++W++++ GY
Sbjct: 261 IGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMS-SRNVVSWNTMIDGY 319

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G+  EA   + KM+  G +P  ++++G L AC   G +  G  ++  +++  +I   
Sbjct: 320 AQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHR-LLDEKKIGFD 378

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             +   ++ M  +  ++D A      +    +   W A++     +G
Sbjct: 379 VSVMNSLISMYSKCKRVDIAASVFGNLK-HKTVVTWNAMILGYAQNG 424



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 125/278 (44%), Gaps = 9/278 (3%)

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
           F+ +  + RVF+ ++ +    +  M+ GY +N  L +A V F E    D + P       
Sbjct: 89  FNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDA-VRFYERMRCDEVMPVVYDFTY 147

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           +L      + L  G++IHG  I      ++    A++++Y+KC  ++ A ++FE     +
Sbjct: 148 LLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMP-QR 206

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D ++W+++V+GY  +G    AV +  +M   G KPD IT+V VL A      +  G  I+
Sbjct: 207 DLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIH 266

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
                    +    +   ++D   + G +  A    K M      S W  ++     +G 
Sbjct: 267 GYAFRA-GFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVS-WNTMIDGYAQNGE 324

Query: 443 SEMQDLAYKSLIQLEPE--NPSNYVSLSNLYASSRRWD 478
           SE    A+ + +++  E   P+N   +  L+A +   D
Sbjct: 325 SEE---AFATFLKMLDEGVEPTNVSMMGALHACANLGD 359


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 256/452 (56%), Gaps = 36/452 (7%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ +  +D   +N+LI G  ++  H EAL +   M+     PD FTL+T+  +  E  D
Sbjct: 443 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD 502

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           +  GM++HG +IK GF  DV + +SL+ MY  C +                         
Sbjct: 503 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQM------------------------ 538

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                D+S+     +VFD     +   W +M+ GY QNG ++EAL +F  M L+  + P 
Sbjct: 539 -----DYSM-----KVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRM-LQAGVRPV 587

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            V+  S++P   +L  L  GKQ+H + IR   N ++ + ++LIDMY KCG++D ARRVF 
Sbjct: 588 PVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVF- 646

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           +   + D ++W++++ GY LHG   EA +L+ +M     KP+ IT + VL+AC  +GL++
Sbjct: 647 NGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVD 706

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G + +NS+ N Y   P+ E CA + D LGRAG LD A +FI  M ++P+ S+W  L+ A
Sbjct: 707 NGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRA 766

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N+ + +   K + +LEP++  ++V LSN+Y++S RW+  A+LR  M+ +G+KK P
Sbjct: 767 CRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEP 826

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
            CSWI +  K H F   DK+HP    I + L+
Sbjct: 827 ACSWIEVKNKLHVFIAHDKSHPWYDRIIDALN 858



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 165/342 (48%), Gaps = 26/342 (7%)

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML---IHGLSIKIGFVVDVILANS 161
           A+ LF  M  S V+P     A++         L +  L   +H L+I+ G   D   AN+
Sbjct: 348 AISLFLQMRAS-VAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANA 406

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+++ +K   F               G+      G   S  +  +   R+VFD+M  R+ 
Sbjct: 407 LLNLCIKLPGF-----------HHPFGTNGPSGEGGLESAAYESM---RKVFDEMLERDA 452

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            +W  +I G  ++    EAL +  EM  +D   P+  +L +VLP  +    +  G  +HG
Sbjct: 453 VSWNTLILGCAEHKRHQEALSMVREM-WRDGFMPDTFTLSTVLPIFAECADIKRGMVVHG 511

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           +AI+   ++DV + ++LIDMY+ C  +D + +VF DS  + DA+ W+S+++GY  +G   
Sbjct: 512 YAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVF-DSFSDCDAVLWNSMLAGYAQNGSVE 570

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           EA+ ++ +M+  G +P  +T   ++ A G   L+  G +++  +I   R      I + +
Sbjct: 571 EALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRA-RFNDNIFISSSL 629

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSI--WGALVSASVMHG 441
           +DM  + G +D A      +    SP I  W A++    +HG
Sbjct: 630 IDMYCKCGNVDIARRVFNGI---QSPDIVSWTAMIMGYALHG 668



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 162/383 (42%), Gaps = 47/383 (12%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L + A    +K     H   +  G  ++ FV + LI  YA C Q   S  VF+S 
Sbjct: 489 TLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSF 548

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
              D  L+NS++ GY +N    EAL +F  M  + V P   T +++    G +  L +G 
Sbjct: 549 SDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGK 608

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   I+  F  ++ +++SL+ MY KCG       +F+ +   ++ SW           
Sbjct: 609 QLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSW----------- 657

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  TAMI GY  +G   EA VLF  M+L + ++PN ++ +
Sbjct: 658 -----------------------TAMIMGYALHGPTTEAFVLFERMELGN-VKPNHITFL 693

Query: 262 SVLPTCSSLIGL--SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +VL  CS   GL  +G K  +  + +      +  C AL D   + G LD A     +  
Sbjct: 694 AVLTACSH-AGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMK 752

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP--DIITIVGVLSACGRSGLINE 377
               +  WS+++    +H     A  +  K+  L  K     + +  + SA GR    NE
Sbjct: 753 IKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGR---WNE 809

Query: 378 GLEIYNSVINTYRIKPTTEICAC 400
             ++  S+    RIK   +  AC
Sbjct: 810 AAQLRKSM----RIKGMKKEPAC 828



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 109/260 (41%), Gaps = 36/260 (13%)

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN---KVSLVSVLPTCSSLIGLSGGKQI 279
           +W   I      G    A+ LFL  Q++  + P      SL + L +C+ L   +    +
Sbjct: 331 SWAYQIRMAASQGQFLHAISLFL--QMRASVAPRSSVPASLPAALKSCAGLGLCTLAASL 388

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKC---------------GSLDCA-----RRVFEDSS 319
           H  AIR     D    NAL+++  K                G L+ A     R+VF D  
Sbjct: 389 HALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVF-DEM 447

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +DA++W++++ G   H +  EA+ +  +M   G  PD  T+  VL        I  G+
Sbjct: 448 LERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGM 507

Query: 380 EIYNSVINTYRIKPTTE----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
                V++ Y IK   +    + + ++DM     Q+D ++    +   +    +W ++++
Sbjct: 508 -----VVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSF-SDCDAVLWNSMLA 561

Query: 436 ASVMHGNSEMQDLAYKSLIQ 455
               +G+ E     ++ ++Q
Sbjct: 562 GYAQNGSVEEALGIFRRMLQ 581


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 182/520 (35%), Positives = 290/520 (55%), Gaps = 22/520 (4%)

Query: 24  QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83
           +HF+ +    +        +++I+   H  +PFV  +L+   +       +  +F+  Q+
Sbjct: 33  RHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQN 92

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
            +VYLY +LI+G V +  + + + L+  M  S++ PD + + ++ K  G    L  G  +
Sbjct: 93  PNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREV 152

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H   +K+G   +  +   L+ +Y KCG F +   +FDEMP+R+V +  V I+ +   G  
Sbjct: 153 HSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGI- 211

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                          ++   WTAMI+G V+NG+ + AL +F  MQ +D + PN+V++V V
Sbjct: 212 ---------------KDTVCWTAMIDGLVRNGESNRALEVFRNMQRED-VMPNEVTIVCV 255

Query: 264 LPTCSSLIGLSGGKQIHGF--AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           L  CS L  L  G+ +  +    R ELNH V    ALI+MYS+CG +D A+RVFE     
Sbjct: 256 LSACSELGALQLGRWVRSYMDKHRIELNHFVG--GALINMYSRCGDIDEAQRVFEQMK-E 312

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K+ IT++S++ G+ LHGK  EAV L+  ++  G  P  +T VGVL+AC   GL   G EI
Sbjct: 313 KNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEI 372

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++S+   Y I+P  E   C+VD+LGR G+L+ A  FI+ M V P   + GAL+SA  +HG
Sbjct: 373 FHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHG 432

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ +   KSL+  +  +   Y+ LSN Y+SS +W   AE+RT M++ G++K PGCS I
Sbjct: 433 NLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSI 492

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            ++ + H F + D  HP    IY+ L++L  I+R    +P
Sbjct: 493 EVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTP 532



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 144/343 (41%), Gaps = 64/343 (18%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S  V   L+    H +LK  ++ HSQ+L LG  SN  +  KLI  Y  CG    ++ VF+
Sbjct: 130 SYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFD 189

Query: 80  SIQHKDV--------YLYN----------SLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
            +  +DV        Y ++          ++I+G V+N   N ALE+F NM   +V P++
Sbjct: 190 EMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNE 249

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T+  +     E+  L +G  +     K    ++  +  +L++MY +CG   E   +F++
Sbjct: 250 VTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQ 309

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           M ++NV ++N                                  +MI G+  +G   EA+
Sbjct: 310 MKEKNVITYN----------------------------------SMIMGFALHGKSVEAV 335

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL------C 295
            LF  + +K    P+ V+ V VL  CS      GG    GF I   +  D  +       
Sbjct: 336 ELFRGL-IKQGFTPSSVTFVGVLNACS-----HGGLAELGFEIFHSMAKDYGIEPQIEHY 389

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
             ++D+  + G L+ A           D +   +++S   +HG
Sbjct: 390 GCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHG 432


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 174/502 (34%), Positives = 284/502 (56%), Gaps = 30/502 (5%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++ AY   G+  +++ +FNS    DV  +N+L++GYV+    +EA ELF  M   +V   
Sbjct: 43  MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSW 102

Query: 121 DFTLATISKL-----------SGEIKDLNV------GMLIHGLSIKIGFVVDV------I 157
           +  ++  ++            +  ++D+        G   +G+  +   V D       +
Sbjct: 103 NIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV 162

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
             N++++ Y++     E   LF+ MP RNV SWN  ++G+A +G   ++  ++ VFD M 
Sbjct: 163 SWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAG---MLEEAKAVFDTMP 219

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEM-QLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           +++  +W AM+  Y Q G  +E L LF+EM +  + +  N+ +   VL TC+ +  L  G
Sbjct: 220 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV--NRSAFACVLSTCADIAALECG 277

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
            Q+HG  IR        + NAL+ MY KCG+++ AR  FE+    +D ++W+++++GY  
Sbjct: 278 MQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYAR 336

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG G EA+ +++ M    +KPD IT+VGVL+AC  SGL+ +G+  + S+ + + +    E
Sbjct: 337 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPE 396

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
              C++D+LGRAG+L  A D +K MP EP  ++WGAL+ AS +H N E+   A + + +L
Sbjct: 397 HYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFEL 456

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           EPEN   YV LSN+YASS +W    ++R MM++RG+KK PG SWI +  K H FS  D  
Sbjct: 457 EPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCV 516

Query: 517 HPCSVSIYEMLDDLILIMRGAA 538
           HP    IY  L+DL + M+ A 
Sbjct: 517 HPEKEKIYAFLEDLDMRMKKAG 538



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 141/316 (44%), Gaps = 42/316 (13%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL--------- 205
           D +  N +++ YV+ G+  E   LF+   + +V SWN  +SG+   G  S          
Sbjct: 36  DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP 95

Query: 206 -------------------VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
                              +V +RR+FD    R+V+ WTA+++GY QNG L+EA  +F  
Sbjct: 96  GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 155

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           M      E N VS  +++        +   K++      +    +V+  N ++  Y++ G
Sbjct: 156 MP-----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR----NVASWNTMLTGYAQAG 206

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
            L+ A+ VF D+   KDA++W+++++ Y   G   E + L+ +M   G   +      VL
Sbjct: 207 MLEEAKAVF-DTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVL 265

Query: 367 SACGRSGLINEGLEIYNSVINT-YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           S C     +  G++++  +I   Y +     +   ++ M  + G ++ A +  + M  E 
Sbjct: 266 STCADIAALECGMQLHGRLIRAGYGV--GCFVGNALLAMYFKCGNMEDARNAFEEME-ER 322

Query: 426 SPSIWGALVSASVMHG 441
               W  +++    HG
Sbjct: 323 DVVSWNTMIAGYARHG 338



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 132/265 (49%), Gaps = 27/265 (10%)

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           MP R+  ++NV IS HA+ G   LV  +R  FD    ++  +W  M+  YV+NG ++EA 
Sbjct: 1   MPVRDSVTYNVMISSHANHG---LVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEAR 57

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            LF       R E + +S  +++        +S  +++      +    DV   N ++  
Sbjct: 58  GLF-----NSRTEWDVISWNALMSGYVQWGKMSEAREL----FDRMPGRDVVSWNIMVSG 108

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y++ G +  ARR+F D++  +D  TW+++VSGY  +G   EA  +++ M     + + ++
Sbjct: 109 YARRGDMVEARRLF-DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM----PERNAVS 163

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG--RAGQLDRALDFIK 419
              +++A  +  +++E  E++N       + P   + +    + G  +AG L+ A     
Sbjct: 164 WNAMVAAYIQRRMMDEAKELFN-------MMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 216

Query: 420 TMPVEPSPSIWGALVSASVMHGNSE 444
           TMP + + S W A+++A    G SE
Sbjct: 217 TMPQKDAVS-WAAMLAAYSQGGCSE 240



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 1/158 (0%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A   +L+   Q H +++  G+    FV   L+  Y  CG    ++  F  ++ +DV
Sbjct: 265 LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDV 324

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHG 145
             +N++I GY ++    EALE+F  M  ++  PDD TL  +         +  G+   + 
Sbjct: 325 VSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYS 384

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           +    G          ++ +  + G+ +E  +L  +MP
Sbjct: 385 MHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMP 422


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 289/529 (54%), Gaps = 26/529 (4%)

Query: 27  LQVSATHRSLKLTKQSHS-------------QILSLGHISNPFVSTKLITAYALCGQPTQ 73
           L++    R L+L +Q H              +I S   + N      +I  Y   G   +
Sbjct: 167 LKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEK 226

Query: 74  SQLVFNSIQ--HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLATISKL 130
           ++ +F+ ++   KD   +NS+I+GY  N   +EAL +F ++     +  D FTL ++   
Sbjct: 227 AKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAA 286

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
             ++  L  G  +H  ++  G   +  +  +L+ MY KC         FD + +R+  +W
Sbjct: 287 CADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATW 346

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           NV ISG+A       +   + +  +MK      NVY W  +I+G+V+NG  + AL LF E
Sbjct: 347 NVLISGYACCNQLENI---QNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTE 403

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           MQ    + P+  ++  +LP C+ L  ++ GKQ+H  +IR+    DV +  AL+DMY+KCG
Sbjct: 404 MQ-TSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCG 462

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
           S+  A +V+   S N + ++ +++++ Y +HG G E + L+  M+  G +PD +T + VL
Sbjct: 463 SIKHAMQVYNRIS-NPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVL 521

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           S+C  +G +  G E ++ ++  Y + P+ +   C+VD+L RAG+LD A + +K +P +P 
Sbjct: 522 SSCVHAGAVETGHEFFD-LMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPD 580

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486
             +WGAL+   V+ GN E+ ++A +SLI+LEP N  NYV L+NLYA + RW  +   R M
Sbjct: 581 SVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQM 640

Query: 487 MKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           +KDRG+ KSPGCSWI      H F   DK+H  +  IY  LD+L   MR
Sbjct: 641 IKDRGMHKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMR 689



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 226/479 (47%), Gaps = 66/479 (13%)

Query: 4   SSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
           ++A +T   +  +   S+T    L+   + R+L L KQ H+  L  G   + FV TKL+ 
Sbjct: 46  TAAHHTHLSLLDKQIDSSTYASLLE---SCRTLNLGKQVHAHTLKTGFHGHEFVETKLLQ 102

Query: 64  AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
            Y   G    + LVF  +  +++Y + ++++ +V +    EAL LF  +   ++  + F 
Sbjct: 103 MYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFV 162

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
              + KL G ++ L +G  +HG+ IK                  +C      L +F    
Sbjct: 163 FPVVLKLCGGLRVLELGRQLHGVVIK------------------RCADMGSALKIFSGFS 204

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK--RRNVYAWTAMINGYVQNGDLDEAL 241
            +NV S+N  I G+  +G+   V +++ +FDQM+   ++  +W +MI+GY  N   DEAL
Sbjct: 205 VKNVVSYNTMIVGYCENGN---VEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEAL 261

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            +F ++ +++ IE +  +L SVL  C+ +  L  GK++H  A+ + L+ +  +  AL++M
Sbjct: 262 SMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEM 321

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG--------------LHGKGHE----- 342
           YSKC  L  A+  F D    +D  TW+ ++SGY               + G G E     
Sbjct: 322 YSKCEDLKAAQLAF-DGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYT 380

Query: 343 ----------------AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY-NSV 385
                           A+ L+ +M     +PDI T+  +L AC R   I  G +++ +S+
Sbjct: 381 WNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSI 440

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
              Y +     I A +VDM  + G +  A+     +   P+     A+++A  MHG+ +
Sbjct: 441 RQGYELD--VHIGAALVDMYAKCGSIKHAMQVYNRIS-NPNLVSQNAMLTAYAMHGHGD 496



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 91/236 (38%), Gaps = 11/236 (4%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A   ++   KQ H+  +  G+  +  +   L+  YA CG    +  V+N I
Sbjct: 415 TVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRI 474

Query: 82  QHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
            + ++   N+++  Y   HGH +E + LF NM  +   PD  T  ++         +  G
Sbjct: 475 SNPNLVSQNAMLTAYAM-HGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETG 533

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHAS 199
                L         +     ++ +  + G+  E   L  ++P++ +   W   + G   
Sbjct: 534 HEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVI 593

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG---DLDEALVLFLEMQLKDR 252
            G+  L   +     +++  N   +  + N Y   G   DLD          +KDR
Sbjct: 594 WGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRT-----RQMIKDR 644


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 186/582 (31%), Positives = 301/582 (51%), Gaps = 69/582 (11%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
           A V +  YT A     LQ       +KL  Q H+ IL  G + + +V+  L+  Y   G+
Sbjct: 154 AGVVTNTYTFAAA---LQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGK 210

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
             ++ ++F +++ KD+  +NS++ G+++N  ++EALE F ++  +++ PD  ++ +I   
Sbjct: 211 MPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVA 270

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
           SG +  L  G  IH  +IK GF  ++++ N+L+ MY KC   S     FD M  +++ SW
Sbjct: 271 SGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISW 330

Query: 191 NVRISGHASS-------------------------GDFSLVVRSRRVFDQMKRRNVYA-- 223
               +G+A +                         G   L  R      ++K  + Y   
Sbjct: 331 TTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIR 390

Query: 224 --------WTAMINGYVQNGDLDEALVLFLEMQLKDRI---------------------- 253
                      +I+ Y + G +D A+ +F  ++ KD +                      
Sbjct: 391 GGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVF 450

Query: 254 --------EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
                   EP+ V+LVS+L    SL  L  GK+IHGF IRK    + S+ N L+DMY++C
Sbjct: 451 SSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARC 510

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           GS++ A ++F  +  N++ I W++++S YG+HG G  AV L+ +M      PD IT + +
Sbjct: 511 GSVEDAYKIFTCTK-NRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLAL 569

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L AC  SGL+NEG      +   Y+++P  E   C+VD+LGR   L+ A   +K+M  EP
Sbjct: 570 LYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEP 629

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485
           +P +W AL+ A  +H N E+ ++A + L++L+ +NP NYV +SN++A++ RW  V E+R 
Sbjct: 630 TPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRM 689

Query: 486 MMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
            MK  GL K+PGCSWI +  K H F   DK HP    IY+ L
Sbjct: 690 RMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKL 731



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 127/477 (26%), Positives = 223/477 (46%), Gaps = 52/477 (10%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           ++ S T    L+       L    + H   +  G  S  FV   L+  YA C     ++ 
Sbjct: 55  SFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARK 114

Query: 77  VFNSIQ-HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
           +F+ +    DV  +NS+I+ Y  N    EAL LFS M  + V  + +T A   +   +  
Sbjct: 115 LFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSS 174

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
            + +GM IH   +K G V+DV +AN+L++MYV+ GK          MP+  V        
Sbjct: 175 FIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGK----------MPEAAV-------- 216

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                           +F  ++ +++  W +M+ G++QNG   EAL  F ++Q  D ++P
Sbjct: 217 ----------------IFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNAD-LKP 259

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           ++VS++S++     L  L  GK+IH +AI+   + ++ + N LIDMY+KC  +    R F
Sbjct: 260 DQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAF 319

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D   +KD I+W++  +GY  +    +A+ L  ++   G   D   I  +L AC     +
Sbjct: 320 -DLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCL 378

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            +  EI+   I      P  +    ++D+ G  G +D A+   +++  +   S W +++S
Sbjct: 379 GKIKEIHGYTIRGGLSDPVLQ--NTIIDVYGECGIIDYAVRIFESIECKDVVS-WTSMIS 435

Query: 436 ASVMHG--NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
             V +G  N  ++  +      LEP    +YV+L ++ +      AV  L T+ K +
Sbjct: 436 CYVHNGLANKALEVFSSMKETGLEP----DYVTLVSILS------AVCSLSTLKKGK 482



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 138/271 (50%), Gaps = 6/271 (2%)

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V+ +  +FD+M  R+++ W AM+ GYV NG+   AL ++ EM+    +  +  +   +L 
Sbjct: 8   VLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMR-HLGVSFDSYTFPVLLK 66

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C  +  L  G +IHG AI+   +  V + N+L+ +Y+KC  ++ AR++F+      D +
Sbjct: 67  ACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVV 126

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W+SI+S Y  +G   EA+ L+++M+  G   +  T    L AC  S  I  G++I+ ++
Sbjct: 127 SWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAI 186

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG-NSE 444
           + + R+     +   +V M  R G++  A      +  +   + W ++++  + +G  SE
Sbjct: 187 LKSGRVLDVY-VANALVAMYVRFGKMPEAAVIFGNLEGKDIVT-WNSMLTGFIQNGLYSE 244

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
             +  Y   +Q     P     +S + AS R
Sbjct: 245 ALEFFYD--LQNADLKPDQVSIISIIVASGR 273



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY KCGS+  A  +F+  S  +   TW++++ GY  +G+   A+ +Y +M  LG   D  
Sbjct: 1   MYGKCGSVLDAEMIFDKMS-ERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSY 59

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T   +L ACG    +  G EI+   I  Y       +   +V +  +   ++ A      
Sbjct: 60  TFPVLLKACGIVEDLFCGAEIHGLAIK-YGCDSFVFVVNSLVALYAKCNDINGARKLFDR 118

Query: 421 MPVEPSPSIWGALVSA 436
           M V      W +++SA
Sbjct: 119 MYVRNDVVSWNSIISA 134


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 181/551 (32%), Positives = 302/551 (54%), Gaps = 66/551 (11%)

Query: 12  LVTSRNY-TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
           L T R++ T++++   L+   T  +L+   Q H++I+  G   + F+ ++ +T       
Sbjct: 16  LPTLRSFDTTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSN 72

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
            + +  VFN +      L+N+ I GY +N+  +  + LF  M  S+  PD FT  ++ K 
Sbjct: 73  FSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKA 132

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK------------------- 171
             ++  +  G+  HG +++ G   DV +  SL+ +Y KCG+                   
Sbjct: 133 CSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSW 192

Query: 172 ---------FS---ECLNLFDEMPQRNVGSWNVRISGHASSGD----------------- 202
                    FS   E   LFDEMP++N  SWN  ISG+   GD                 
Sbjct: 193 TAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVV 252

Query: 203 -FSLVV----------RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
            F+ ++           +R VF++   R+V AW+A+I+GYVQNG  +EA+ +FLEM  ++
Sbjct: 253 SFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRN 312

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-HDVSLCNALIDMYSKCGSLDC 310
            ++P++  +VS++  CS +  L   K +  +  +  ++ H   +  ALIDM +KCGS+D 
Sbjct: 313 -VKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDR 371

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           A ++FE+    +D I++ S++ G  +HG G +AV L+++M+  G  PD +    +L+AC 
Sbjct: 372 ATKLFEEMP-KRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACS 430

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
           R+GL++EG   + S+   Y I P+ +  AC+VD+LGRAG+L  A + +K+MPVEP    W
Sbjct: 431 RAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAW 490

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
           GAL+ A  +H + E+ ++    L +LEP+N  NYV LSN+YA++ +W  V+ LR  M++R
Sbjct: 491 GALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRER 550

Query: 491 GLKKSPGCSWI 501
           G++K PGCSWI
Sbjct: 551 GIRKIPGCSWI 561


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 179/555 (32%), Positives = 291/555 (52%), Gaps = 66/555 (11%)

Query: 6   ARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           A NT     S N T  T+   L++S+++  + L KQ H Q++ LG  S   V + L+  Y
Sbjct: 122 AYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMY 181

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSL------------------------------ING 95
           +  G  + ++ VF  +  ++  +YN+L                              I G
Sbjct: 182 SKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKG 241

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
             +N    EA+E F  M    +  D +   ++    G +  +N G  IH   I+      
Sbjct: 242 LAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDH 301

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + + ++L+ MY KC    +CL+                               ++ VFD+
Sbjct: 302 IYVGSALIDMYCKC----KCLHY------------------------------AKTVFDR 327

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           MK++NV +WTAM+ GY Q G   EA+ +FL+MQ +  I+P+  +L   +  C+++  L  
Sbjct: 328 MKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQ-RSGIDPDHYTLGQAISACANISSLEE 386

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G Q HG AI   L H +++ N+L+ +Y KCG +D + R+F + +  +D ++W+++VS Y 
Sbjct: 387 GSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNV-RDEVSWTAMVSAYA 445

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
             G+  EA+ L++KMV LG KPD +T+ GV+SAC R+GL+ +G   +  +IN Y I P+ 
Sbjct: 446 QFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSN 505

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
              +C++D+  R+G+++ A+ FI  MP  P    W  L+SA    GN E+   A +SLI+
Sbjct: 506 GHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIE 565

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           L+P +P+ Y  LS++YAS  +WD VA+LR  MK++ ++K PG SWI   GK H FS  D+
Sbjct: 566 LDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDE 625

Query: 516 AHPCSVSIYEMLDDL 530
           + P S  IY  L++L
Sbjct: 626 SSPYSDQIYAKLEEL 640



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 205/406 (50%), Gaps = 13/406 (3%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM- 112
           N F    L+ AY+  G  ++ +  F  +  +D   +N LI GY  +     A++ ++ M 
Sbjct: 68  NLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 127

Query: 113 --YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
             + SN++    TL T+ KLS     +++G  IHG  IK+GF   +++ + L+ MY K G
Sbjct: 128 KDFSSNLT--RVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVG 185

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
             S+   +F  +  RN   +N  + G  + G   ++  + ++F  M++ +V +W+AMI G
Sbjct: 186 CISDAKKVFYGLDDRNTVMYNTLMGGLLACG---MIEDALQLFRGMEKDSV-SWSAMIKG 241

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
             QNG   EA+  F EM+++  ++ ++    SVLP C  L  ++ G+QIH   IR  L  
Sbjct: 242 LAQNGMEKEAIECFREMKIEG-LKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQD 300

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
            + + +ALIDMY KC  L  A+ VF D    K+ ++W+++V GYG  G+  EAV ++  M
Sbjct: 301 HIYVGSALIDMYCKCKCLHYAKTVF-DRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDM 359

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G  PD  T+   +SAC     + EG + +   I    I   T +   +V + G+ G 
Sbjct: 360 QRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYIT-VSNSLVTLYGKCGD 418

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           +D +      M V    S W A+VSA    G +      +  ++QL
Sbjct: 419 IDDSTRLFNEMNVRDEVS-WTAMVSAYAQFGRAVEAIQLFDKMVQL 463



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 158/355 (44%), Gaps = 39/355 (10%)

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           +IHG  I+     +  L N+++  Y           +FD +PQ N+ SWN  +  ++ SG
Sbjct: 24  MIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSG 83

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
             S      R F+++  R+   W  +I GY  +G +  A+  +  M         +V+L+
Sbjct: 84  HLS---EMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLM 140

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF------ 315
           ++L   SS   +S GKQIHG  I+      + + + L+DMYSK G +  A++VF      
Sbjct: 141 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDR 200

Query: 316 ------------------EDS-----SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
                             ED+        KD+++WS+++ G   +G   EA+  + +M  
Sbjct: 201 NTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKI 260

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G K D      VL ACG  G IN+G +I+  +I T  ++    + + ++DM  +   L 
Sbjct: 261 EGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRT-NLQDHIYVGSALIDMYCKCKCLH 319

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYV 465
            A      M  +   S W A+V   V +G +     A K  + ++    +P +Y 
Sbjct: 320 YAKTVFDRMKQKNVVS-WTAMV---VGYGQTGRAGEAVKIFLDMQRSGIDPDHYT 370


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 195/583 (33%), Positives = 308/583 (52%), Gaps = 70/583 (12%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            LQ+   +  LK  ++ H  I++ G  SN FV T +++ YA C Q   +  +F  +QHKD
Sbjct: 151 LLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKD 210

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           +  + +L+ GY +N     AL+L   M  +   PD  TL +I     ++K L +G  IHG
Sbjct: 211 LVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHG 270

Query: 146 LSIKIGFVVDVILANSLMSMYVK----------------------------CGK------ 171
            + + GF   V + N+L+ MY K                            C +      
Sbjct: 271 YAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEE 330

Query: 172 -FSECLNLFDE--MPQR-----------NVGS----WNV-------RISGHASSGD--FS 204
            F+  L + DE  +P R           N+G     W V       ++  + S  +   S
Sbjct: 331 AFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLIS 390

Query: 205 LVVRSRRV------FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
           +  + +RV      F+ +++ NV  W AMI GY QNG + EAL LF  MQ +  I+ +  
Sbjct: 391 MYSKCKRVDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQG-IKLDCF 448

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +LV V+   +        K IHG A+R  ++++V +  AL+DMY+KCG++  AR++F D 
Sbjct: 449 TLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLF-DM 507

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              +  ITW++++ GYG HG G E + L+N+M     KP+ IT + V+SAC  SG + EG
Sbjct: 508 MQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEG 567

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           L ++ S+   Y ++PT +  + +VD+LGRAGQLD A +FI+ MP++P  S+ GA++ A  
Sbjct: 568 LLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACK 627

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           +H N E+ + A + L +L+P+    +V L+N+YAS+  WD VA++RT M+D+GL K+PGC
Sbjct: 628 IHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGC 687

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           SW+ +  + H F      HP S  IY  L+ L   ++ A   P
Sbjct: 688 SWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVP 730



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 185/396 (46%), Gaps = 39/396 (9%)

Query: 46  ILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA 105
           I+  G  +     TK+I+ +   G  +++  VF  ++ K   LY+ ++ GY KN    +A
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDA 129

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           L  F  M    V       A + +L GE  DL  G  IHGL I  GF  ++ +  ++MS+
Sbjct: 130 LCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSL 189

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y KC +      +F+ M  +++ SW   ++                              
Sbjct: 190 YAKCRQIDNAYKMFERMQHKDLVSWTTLVA------------------------------ 219

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
               GY QNG    AL L L+MQ   + +P+ V+LVS+LP  + +  L  G+ IHG+A R
Sbjct: 220 ----GYAQNGHAKRALQLVLQMQEAGQ-KPDSVTLVSILPAVADMKALRIGRSIHGYAFR 274

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
                 V++ NAL+DMY KCGS   AR VF+    +K  ++W++++ G   +G+  EA  
Sbjct: 275 SGFESLVNVTNALLDMYFKCGSARIARLVFKGMR-SKTVVSWNTMIDGCAQNGESEEAFA 333

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
            + KM+  G  P  +T++GVL AC   G +  G  ++  +++  ++     +   ++ M 
Sbjct: 334 TFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVH-KLLDKLKLDSNVSVMNSLISMY 392

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
            +  ++D A      +  E +   W A++     +G
Sbjct: 393 SKCKRVDIAASIFNNL--EKTNVTWNAMILGYAQNG 426



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 126/273 (46%), Gaps = 9/273 (3%)

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            + RVF+ ++ +    +  M+ GY +N  L +AL  FL M + D +         +L  C
Sbjct: 97  EAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRM-MCDEVRLVVGDYACLLQLC 155

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
              + L  G++IHG  I      ++ +  A++ +Y+KC  +D A ++FE    +KD ++W
Sbjct: 156 GENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQ-HKDLVSW 214

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +++V+GY  +G    A+ L  +M   G KPD +T+V +L A      +  G  I+     
Sbjct: 215 TTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFR 274

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
           +   +    +   ++DM  + G    A    K M  +   S W  ++     +G SE   
Sbjct: 275 S-GFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVS-WNTMIDGCAQNGESEE-- 330

Query: 448 LAYKSLIQL--EPENPSNYVSLSNLYASSRRWD 478
            A+ + +++  E E P+    +  L A +   D
Sbjct: 331 -AFATFLKMLDEGEVPTRVTMMGVLLACANLGD 362


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 176/494 (35%), Positives = 274/494 (55%), Gaps = 39/494 (7%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           NYT   V   ++  A   +L+  K+ H  I+  G  S+ FV + L+  Y+  G+    +L
Sbjct: 128 NYTFPFV---VRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMEL 184

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF  +  +++  + ++I GYV+N    E L +F  M  S   P+  TL ++      ++ 
Sbjct: 185 VFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEF 244

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           LN+G LIHG  IK+G   DV L N+L+++Y KCG                          
Sbjct: 245 LNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGN------------------------- 279

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                    V  +R +FD M  +N+ +W AMI  Y QN     A+ LF  MQ  ++++ +
Sbjct: 280 ---------VETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQ-AEKVDFD 329

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            +++VSV+  C+SL  L+ G+ +H    RK L  +VS+ NALIDMY+KCG++D AR VFE
Sbjct: 330 YITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFE 389

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
                +  ++W+S++     HG G +A+ L+++M   G KP+  T   V +AC  SGL+ 
Sbjct: 390 RLPC-RSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVE 448

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EG + + S++  Y I P  E CAC+VD+LGRAG L  A +FI  MPVEP  S+WGAL+ +
Sbjct: 449 EGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGS 508

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N E+ +L  + L  L+P+  + YV +SN+YA + RW+  A LR +M++R LKK P
Sbjct: 509 CRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIP 568

Query: 497 GCSWISIHGKTHCF 510
           G S + ++ + H F
Sbjct: 569 GHSLVEVNRRFHTF 582



 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 151/504 (29%), Positives = 252/504 (50%), Gaps = 60/504 (11%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ--S 74
           NY S +  + L   +   SL    + H+ +++ G   N  +STKLI   A C  PT   +
Sbjct: 26  NYHSRSFNYLLNCCS---SLPDLSRIHALVVTNGCGQNLLLSTKLIIT-ACCLAPTMDYA 81

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI 134
           + +F+ +  +DV+L+N+LI GY       EAL L+SNM+ + + PD++T   + +    +
Sbjct: 82  RKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVL 141

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
             L  G  +H   +K GF  DV + +SL++MY + G   E L +                
Sbjct: 142 SALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSG---ETLGM---------------- 182

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
                            VF +M  RN+ +WTA+I GYVQN    E L +F EM +    +
Sbjct: 183 ---------------ELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREM-VGSGTQ 226

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           PN V+LVSVLP C+ L  L+ GK IHG+ I+  ++ DVSL NALI +Y KCG+++ AR +
Sbjct: 227 PNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSL 286

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F D    ++ ++W+++++ Y  +  G  AV L+ +M       D IT+V V+SAC   G 
Sbjct: 287 F-DGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGA 345

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +N G  ++  ++    ++    I   ++DM  + G +D A +  + +P     S W +++
Sbjct: 346 LNTGRWMHE-LVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVS-WTSMI 403

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR----TMMKDR 490
            A   HG+ E   L   S ++ E   P+++ + + ++ + R    V E R    +MM+D 
Sbjct: 404 GACASHGHGE-DALKLFSRMKDEGVKPNSF-TFAAVFTACRHSGLVEEGRKHFESMMRDY 461

Query: 491 GLKKSPGCSWISIHGKTHCFSVAD 514
            +          + G  HC  + D
Sbjct: 462 SI----------MPGVEHCACMVD 475


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 191/596 (32%), Positives = 295/596 (49%), Gaps = 80/596 (13%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           +   +YT   V      SA  R     K+ H  +L LG  S   V   LI AY  CG+  
Sbjct: 154 IRGDSYTFTCVLKGFAASAKVRE---CKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVE 210

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            ++++F+ +  +DV  +NS+I+G   N      LE F  M    V  D  TL  +     
Sbjct: 211 SARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACA 270

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS------------------- 173
            + +L +G  +H   +K GF   V+  N+L+ MY KCG  +                   
Sbjct: 271 NVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTS 330

Query: 174 ------------ECLNLFDEMPQR-----------------------------------N 186
                       E + LFDEM  +                                   N
Sbjct: 331 IIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNN 390

Query: 187 VGS----WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           +GS     N  ++ +A  G       +  +F Q+  +N+ +W  MI GY QN   +EAL 
Sbjct: 391 MGSNLPVSNALMNMYAKCGSME---EANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQ 447

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302
           LFL+MQ   +++P+ V++  VLP C+ L  L  G++IHG  +RK    D+ +  AL+DMY
Sbjct: 448 LFLDMQ--KQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMY 505

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362
            KCG L  A+++F D    KD I W+ +++GYG+HG G EA+  + KM   G +P+  + 
Sbjct: 506 VKCGLLVLAQQLF-DMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSF 564

Query: 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
             +L AC  SGL+ EG ++++S+ +   I+P  E  AC+VD+L R+G L RA  FI+TMP
Sbjct: 565 TSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMP 624

Query: 423 VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482
           ++P  +IWGAL+S   +H + E+ +   + + +LEPEN   YV L+N+YA + +W+ V +
Sbjct: 625 IKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKK 684

Query: 483 LRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM-RGA 537
           ++  +   GLK   GCSWI + GK + F   D +HP +  I  +L  L + M RG 
Sbjct: 685 IQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTSHPQAKMIDSLLRKLTMKMNRGG 740



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 206/433 (47%), Gaps = 41/433 (9%)

Query: 7   RNTFALVTSRNYTSATVQHF---LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
           RN   L++    +   +  +   LQ+ A  +SL+  K+ HS I S G   +  +  KL+ 
Sbjct: 41  RNAMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVF 100

Query: 64  AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
            Y  CG   + + +F+ I +  ++L+N L++ Y K   + E++ LF  M    +  D +T
Sbjct: 101 MYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYT 160

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
              + K       +     +HG  +K+GF     + NSL++ Y KCG+      LFDE+ 
Sbjct: 161 FTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELS 220

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
            R+V SWN  ISG                               +NG+ +NG     L  
Sbjct: 221 DRDVVSWNSMISG-----------------------------CTMNGFSRNG-----LEF 246

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           F++M L   ++ +  +LV+VL  C+++  L+ G+ +H + ++   +  V   N L+DMYS
Sbjct: 247 FIQM-LNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYS 305

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           KCG+L+ A  VF         ++W+SI++ +   G  +EA+ L+++M   G +PDI  + 
Sbjct: 306 KCGNLNGANEVFVKMG-ETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVT 364

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            V+ AC  S  +++G E++N  I    +     +   +++M  + G ++ A      +PV
Sbjct: 365 SVVHACACSNSLDKGREVHNH-IKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPV 423

Query: 424 EPSPSIWGALVSA 436
           +   S W  ++  
Sbjct: 424 KNIVS-WNTMIGG 435



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 167/379 (44%), Gaps = 49/379 (12%)

Query: 68  CGQPTQSQLVFNSIQHKDVYL-YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
           CG         +   H +V +  N+ I  + +      A++L S    S +  +  T  +
Sbjct: 5   CGSSVGVSATLSETTHNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELN--TYCS 62

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           + +L  E+K L  G  +H +    G  +D +L   L+ MYV CG                
Sbjct: 63  VLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGD--------------- 107

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
                              +V+ RR+FD +    ++ W  +++ Y + G+  E++ LF +
Sbjct: 108 -------------------LVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEK 148

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           MQ +  I  +  +   VL   ++   +   K++HG+ ++       ++ N+LI  Y KCG
Sbjct: 149 MQ-ELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCG 207

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
            ++ AR +F++ S ++D ++W+S++SG  ++G     +  + +M+ LG   D  T+V VL
Sbjct: 208 EVESARILFDELS-DRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVL 266

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKP----TTEICACVVDMLGRAGQLDRALDFIKTMP 422
            AC   G +  G       ++ Y +K            ++DM  + G L+ A +    M 
Sbjct: 267 VACANVGNLTLG-----RALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMG 321

Query: 423 VEPSPSIWGALVSASVMHG 441
            E +   W ++++A V  G
Sbjct: 322 -ETTIVSWTSIIAAHVREG 339



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 95/229 (41%), Gaps = 28/229 (12%)

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           A I  + + GDL  A+ L    Q +  +E N  +  SVL  C+ L  L  GK++H     
Sbjct: 29  AKICKFCEMGDLRNAMKLLSRSQ-RSELELN--TYCSVLQLCAELKSLEDGKRVHSIISS 85

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             +  D  L   L+ MY  CG L   RR+F D   N     W+ ++S Y   G   E+V 
Sbjct: 86  NGMAIDEVLGAKLVFMYVNCGDLVKGRRIF-DGILNDKIFLWNLLMSEYAKIGNYRESVG 144

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINE-----------GLEIYNSVINTYRIKPT 394
           L+ KM  LG + D  T   VL     S  + E           G   YN+V+N+      
Sbjct: 145 LFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNS------ 198

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
                 ++    + G+++ A      +      S W +++S   M+G S
Sbjct: 199 ------LIAAYFKCGEVESARILFDELSDRDVVS-WNSMISGCTMNGFS 240


>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 525

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 189/515 (36%), Positives = 286/515 (55%), Gaps = 31/515 (6%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP-------TQSQLVFNSIQHKDV 86
           +S+K  KQ+H+Q+ + G  +N F  ++++   A C          T +  VF  IQ+  V
Sbjct: 16  KSMKHLKQAHAQVFTTGLENNTFALSRVL---AFCSSHKHHHESLTYACRVFEQIQNPTV 72

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
            +YN+LI  ++ N+    AL++F  M  S + PD++T+  + K  G   D + G +IHG 
Sbjct: 73  CIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDCSFGKMIHGY 132

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           S K+G V D+ + NSLM+MY   G       +FDE+P  NV SW+V ISG+A  GD   V
Sbjct: 133 SSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGD---V 189

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             +R  FD+   ++   W AMI+GYVQN    E+L LF  MQL D I P++   VS+L  
Sbjct: 190 DSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTD-IVPDESIFVSILSA 248

Query: 267 CSSLIGLSGGKQIHGFAIRKELNH------DVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           C+ L  L  G  IH     + LN        V L  +L+DMY+KCG+L+ A+R+F DS  
Sbjct: 249 CAHLGALEIGVWIH-----QHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLF-DSMN 302

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            +D + W++++SG  +HG G  A+ L+  M  +G KPD IT + V +AC  SG+  EGL 
Sbjct: 303 MRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTACSYSGMAYEGLM 362

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS----IWGALVSA 436
           + + + + Y I P +E   C+VD+L RAG  + A+  I+ +    + S     W A +SA
Sbjct: 363 LLDKMCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLAWRAFLSA 422

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSN-YVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
              HG +++ +LA + ++QL+    S  YV LSNLYA+S +      +R MMK +G  K+
Sbjct: 423 CCNHGETQLAELAAEKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKIKGTNKA 482

Query: 496 PGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           PGCS + I G    F   +K HP    I+ +L  +
Sbjct: 483 PGCSSVEIDGVISEFIAGEKTHPQMEEIHSVLKKM 517


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 189/569 (33%), Positives = 292/569 (51%), Gaps = 83/569 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           ++ + L    + +++  TK+ H   +  G   + FV   LI AYA CG    +  VFN +
Sbjct: 229 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMM 288

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT----LATISKLSGEIKDL 137
           + KDV  +N+++ GY ++     A ELF NM   N+  D  T    +A  S+     + L
Sbjct: 289 EFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEAL 348

Query: 138 NV-------------------------------GMLIHGLSIKIGFVV----------DV 156
           NV                               GM IH  S+K   +           D+
Sbjct: 349 NVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDL 408

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           ++ N+L+ MY KC  F    ++FD++P                                +
Sbjct: 409 MVYNALIDMYSKCRSFKAARSIFDDIP--------------------------------L 436

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSG 275
           + RNV  WT MI G+ Q GD ++AL LF+EM  +   + PN  ++  +L  C+ L  +  
Sbjct: 437 EERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 496

Query: 276 GKQIHGFAIRKELNHDVS---LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           GKQIH + +R    +D S   + N LI+MYSKCG +D AR VF DS   K AI+W+S+++
Sbjct: 497 GKQIHAYVLRHH-QYDSSAYFVANCLINMYSKCGDVDTARHVF-DSMSQKSAISWTSMMT 554

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           GYG+HG+G EA+ +++KM   G  PD IT + VL AC   G++++GL  ++S+   Y + 
Sbjct: 555 GYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLT 614

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           P  E  A  +D+L R G+LD+A   +K MP+EP+  +W AL+SA  +H N E+ + A   
Sbjct: 615 PRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNK 674

Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           L+++  EN  +Y  +SN+YA++ RW  VA +R +MK  G+KK PGCSW+     T  F V
Sbjct: 675 LVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFV 734

Query: 513 ADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            D++HP S  IY +L+ LI  ++     P
Sbjct: 735 GDRSHPLSPQIYALLESLIDRIKAMGYVP 763



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 242/481 (50%), Gaps = 35/481 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ H L+      S +     H  I   G  SN F+   L+  Y+ CG   ++ ++F+ I
Sbjct: 119 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 178

Query: 82  QHK---DVYLYNSLINGYVKNHGHNEALELFSNMYY------SNVSPDDFTLATISKLSG 132
             +   DV  +NS+++ +VK+     AL+LFS M        +N   D  ++  I    G
Sbjct: 179 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 238

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +K +     +HG +I+ G  +DV + N+L+  Y KCG     + +F+ M  ++V SWN 
Sbjct: 239 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 298

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNV----YAWTAMINGYVQNGDLDEALVLFLEMQ 248
            ++G++ SG+F        +F  M++ N+      WTA+I GY Q G   EAL +F +M 
Sbjct: 299 MVAGYSQSGNFKAAF---ELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 355

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL----------NHDVSLCNAL 298
               + PN V+++SVL  C+SL   S G +IH ++++  L          + D+ + NAL
Sbjct: 356 FSGSL-PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 414

Query: 299 IDMYSKCGSLDCARRVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC--LGS 355
           IDMYSKC S   AR +F+D     ++ +TW+ ++ G+  +G  ++A+ L+ +M+    G 
Sbjct: 415 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 474

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA-CVVDMLGRAGQLDRA 414
            P+  TI  +L AC     I  G +I+  V+  ++   +    A C+++M  + G +D A
Sbjct: 475 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 534

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
                +M  + + S W ++++   MHG  SE  D+  K  ++     P +   L  LYA 
Sbjct: 535 RHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDK--MRKAGFVPDDITFLVVLYAC 591

Query: 474 S 474
           S
Sbjct: 592 S 592



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 192/443 (43%), Gaps = 81/443 (18%)

Query: 53  SNPFVS-----TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
           S PF+S     T ++ +Y  CG    + LV   +       +N LI  ++K    + A+ 
Sbjct: 44  SEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAIN 103

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           +   M  +    D FTL  + K  GE+     G   HGL    GF  +V + N+L++MY 
Sbjct: 104 VSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYS 163

Query: 168 KCGKFSECLNLFDEMPQR---NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           +CG   E   +FDE+ QR   +V SWN  +S H  S +                    AW
Sbjct: 164 RCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN--------------------AW 203

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           TA+        DL   + L +  +  +    + +S+V++LP C SL  +   K++HG AI
Sbjct: 204 TAL--------DLFSKMTLIVHEKPTNE-RSDIISIVNILPACGSLKAVPQTKEVHGNAI 254

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK---------------------- 322
           R     DV + NALID Y+KCG ++ A +VF    F                        
Sbjct: 255 RNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFE 314

Query: 323 ------------DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
                       D +TW+++++GY   G  HEA+ ++ +M+  GS P+ +TI+ VLSAC 
Sbjct: 315 LFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACA 374

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTE---------ICACVVDMLGRAGQLDRALDFIKTM 421
             G  ++G+EI+   +    +    +         +   ++DM  +      A      +
Sbjct: 375 SLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDI 434

Query: 422 PVEPSPSI-WGALVSASVMHGNS 443
           P+E    + W  ++     +G+S
Sbjct: 435 PLEERNVVTWTVMIGGHAQYGDS 457


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 182/544 (33%), Positives = 288/544 (52%), Gaps = 39/544 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLI--TAYALCGQPTQSQLVFNSIQHKDVYLYNSL 92
           SLK TKQ H+QI   G  ++P V  KL+   A  +      +  +F+   + D +++N+L
Sbjct: 14  SLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTL 73

Query: 93  INGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I     +     +L  F  +     +SPD FT A   K     + L  G+ +H  + + G
Sbjct: 74  IRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHG 133

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEM----------------------------- 182
           F   + +  +L+SMY +CG       +FDEM                             
Sbjct: 134 FDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFG 193

Query: 183 --PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
             P RN+ SWN  ++G+A +G+  L   +RRVF +M  R+  +W+ MI G+  NG  DEA
Sbjct: 194 CMPVRNLTSWNGMLAGYAKAGELGL---ARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEA 250

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
              F E+ L++ I  N+VSL  VL  C+       GK +HGF  +    +  S+ NALID
Sbjct: 251 FGFFREL-LREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALID 309

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
            YSKCG++  AR VF++    +  ++W+SI++G  +HG G EA+ L+++M   G +PD I
Sbjct: 310 TYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGI 369

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T + +L AC  SGL+ EG  +++ + N Y I+P  E   C+VD+ GRA +L +A +FI  
Sbjct: 370 TFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICE 429

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MPV P+  IW  L+ A  +HGN EM +L    L +++P+N  ++V LSN+YA + +W  V
Sbjct: 430 MPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDV 489

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA- 539
           + +R  M +  +KK+PG S I I    + F   +K +  +   +E L +++L +R  A  
Sbjct: 490 SSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGY 549

Query: 540 SPHL 543
           +P L
Sbjct: 550 APQL 553



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ-HKD 85
           L   A   + +  K  H  +   G +    V+  LI  Y+ CG    ++LVF ++   + 
Sbjct: 273 LSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARS 332

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           +  + S+I G   +    EA++LF  M  S V PD  T  ++
Sbjct: 333 IVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISL 374


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 177/511 (34%), Positives = 277/511 (54%), Gaps = 38/511 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +++  ++ H+ ++   +    ++ T+LI  Y  C     ++ V + +  ++V  + ++I+
Sbjct: 25  AIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMIS 84

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY +    +EAL LF  M  S  +P++FT AT+           +G  IH L IK  F  
Sbjct: 85  GYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFES 144

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
            + + +SL+ MY K GK  E                                  +RRVFD
Sbjct: 145 HIFVGSSLLDMYAKAGKICE----------------------------------ARRVFD 170

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            +  R+V + TA+I+GY Q G  +EAL LF  +Q ++ +  N V+  SVL   S L  L 
Sbjct: 171 GLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQ-REGMRSNYVTYASVLTALSGLAALD 229

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+Q+H   +R +L   V L N+LIDMYSKCGSL  +RR+F DS   +  I+W++++ GY
Sbjct: 230 HGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIF-DSMPERTVISWNAMLVGY 288

Query: 335 GLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR-IK 392
             HG G EAV L+  M      KPD +T + VLS C   G+ + GLEI+  ++N     +
Sbjct: 289 SKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFE 348

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           P  E   CVVD+ GRAG+++ A +FIK MP EP+ +IWG+L+ A  +H N  + +   + 
Sbjct: 349 PEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARR 408

Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           L+++E EN  NYV LSNLYAS+ RWD V  +R +MK++ + K PG SWI +    H F  
Sbjct: 409 LLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHA 468

Query: 513 ADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           +D++HP    ++  + +L + ++ A   P L
Sbjct: 469 SDRSHPRKEEVFAKVRELSIKIKEAGYVPEL 499



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 158/348 (45%), Gaps = 51/348 (14%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            +T ATV   L    +    +L +Q HS ++     S+ FV + L+  YA  G+  +++ 
Sbjct: 111 EFTFATV---LTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARR 167

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI-SKLSGEIK 135
           VF+ +  +DV    ++I+GY +     EAL+LF  +    +  +  T A++ + LSG + 
Sbjct: 168 VFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSG-LA 226

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
            L+ G  +H   ++      V+L NSL+ MY KCG  +    +FD MP+R V SWN    
Sbjct: 227 ALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWN---- 282

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                                         AM+ GY ++G   EA+ LF  M+ +++++P
Sbjct: 283 ------------------------------AMLVGYSKHGLGREAVELFKLMKEENKVKP 312

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-------NHDVSLCNALIDMYSKCGSL 308
           + V+ ++VL  CS      GG +  G  I  E+         ++     ++D++ + G +
Sbjct: 313 DSVTFLAVLSGCS-----HGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRV 367

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           + A    +   F   A  W S++    +H   H    +  +++ + S+
Sbjct: 368 EEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESE 415



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 2/161 (1%)

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVL  C S   +  G+++H   I+      V L   LI +Y+KC  L  ARRV  D    
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVL-DEMPE 73

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           ++ ++W++++SGY   G   EA+ L+ +M+  G+ P+  T   VL++C  S     G +I
Sbjct: 74  RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 133

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
           ++ VI T   +    + + ++DM  +AG++  A      +P
Sbjct: 134 HSLVIKT-SFESHIFVGSSLLDMYAKAGKICEARRVFDGLP 173


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 190/574 (33%), Positives = 296/574 (51%), Gaps = 40/574 (6%)

Query: 6   ARNTFALVTSRNYTSA--TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
           A  TF  + S  +  +  T+ + L   A   +  + ++ H  ++ LG  S   V+  ++ 
Sbjct: 331 AVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLY 390

Query: 64  AYALCGQPTQSQLVFNSIQ-------------------------------HKDVYLYNSL 92
            Y  CG    ++ VF  +Q                                + +  +N++
Sbjct: 391 MYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTI 450

Query: 93  INGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I GY +N     AL+ FS M   S++ PD FT+ ++      ++ L +G  +H   ++ G
Sbjct: 451 IAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTG 510

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDE--MPQRNVGSWNVRISGHASSGDFSLVVRS 209
                 + N+L+S Y K G       + D+  +   NV S+   + G+   GD     ++
Sbjct: 511 MPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTK---QA 567

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           R +FD M  R+V AWTAMI GY QNG  DEA+ LF  M L    EPN  +L +VL  C+S
Sbjct: 568 REIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGP-EPNSHTLAAVLSACAS 626

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  L  GKQIH  AIR      VS+ NA+I +Y++ GS+  ARRVF+   + K+ ITW+S
Sbjct: 627 LAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTS 686

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++     HG G +AV+L+ +MV +G KPD IT VGVLSAC  +G +++G   Y  + N +
Sbjct: 687 MIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEH 746

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I P     AC+VD+  RAG L  A +FI+ MPV P   +WG+L++A  +  N+++ +LA
Sbjct: 747 GIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELA 806

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
              L+ ++P N   Y +L+N+Y++  RW+  A +  + KD+G+KK  G SW  + GK H 
Sbjct: 807 AGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHV 866

Query: 510 FSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           F   D  HP   SIY    ++   ++ A   P L
Sbjct: 867 FGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDL 900



 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 206/435 (47%), Gaps = 36/435 (8%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    L++ YA  G+   + +VF  +  +D   +  +I G  ++    +A++ F +M 
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
               +P  FTL  +      ++   VG  +H   +K+G    V +ANS++ MY KCG   
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAE 399

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
               +F+ M  R+V SWNV +S +   G   L V    +F+ M  R++ +W  +I GY Q
Sbjct: 400 TARAVFERMQVRSVSSWNVMVSLYTHQGRMELAV---SMFENMVERSIVSWNTIIAGYNQ 456

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           NG    AL  F  M     +EP+  ++ SVL  C++L  L  GKQ+H + +R  +     
Sbjct: 457 NGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQ 516

Query: 294 LCNALIDMYSKCGSLDCARRVFEDS--------SF------------------------N 321
           + NALI  Y+K GS++ ARR+ + +        SF                        N
Sbjct: 517 IMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNN 576

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D I W++++ GY  +G+  EA+ L+  M+ +G +P+  T+  VLSAC     ++ G +I
Sbjct: 577 RDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQI 636

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +   I + + + +  +   ++ +  R+G +  A      +        W +++ A   HG
Sbjct: 637 HCKAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHG 695

Query: 442 NSEMQDLAYKSLIQL 456
             E   + ++ ++++
Sbjct: 696 LGEQAVVLFEEMVRV 710



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 162/314 (51%), Gaps = 42/314 (13%)

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMY----VKCGKFSECLNLFDEMP--QRNVGSWN 191
           + G  IH  ++K G +V   L N+L++ Y    V  G F E   LFD++P  +RN  +WN
Sbjct: 226 SAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWN 285

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
             +S +A SG       +  VF +M  R+  +WT MI G  ++G   +A+  FL+M + +
Sbjct: 286 SLLSLYAKSGRLP---DAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDM-VSE 341

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
              P++ +L +VL +C+++     G+++H F ++  L+  V + N+++ MY KCG  + A
Sbjct: 342 GFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETA 401

Query: 312 RRVFED------SSFN------------------------KDAITWSSIVSGYGLHGKGH 341
           R VFE       SS+N                        +  ++W++I++GY  +G   
Sbjct: 402 RAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDG 461

Query: 342 EAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            A+  +++M+   S +PD  T+  VLSAC    ++  G ++++ ++ T  +  +++I   
Sbjct: 462 MALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRT-GMPCSSQIMNA 520

Query: 401 VVDMLGRAGQLDRA 414
           ++    ++G ++ A
Sbjct: 521 LISTYAKSGSVETA 534



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 38/229 (16%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG-SLDC---ARRVFEDS 318
           +L  C + +  S G+ IH  A++  L     LCN L+  Y+  G S  C   AR +F+D 
Sbjct: 215 LLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDI 274

Query: 319 SF--------------------------------NKDAITWSSIVSGYGLHGKGHEAVLL 346
            +                                ++DA++W+ ++ G    G+  +AV  
Sbjct: 275 PYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKT 334

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           +  MV  G  P   T+  VLS+C        G +++  V+    +     +   V+ M G
Sbjct: 335 FLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVK-LGLSSCVPVANSVLYMYG 393

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           + G  + A    + M V  S S W  +VS     G  E+    ++++++
Sbjct: 394 KCGDAETARAVFERMQVR-SVSSWNVMVSLYTHQGRMELAVSMFENMVE 441


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 171/466 (36%), Positives = 268/466 (57%), Gaps = 19/466 (4%)

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
           T ++ +F+ I   ++ L+NS+  GY ++  + E   +F  M+  NV      +A  S ++
Sbjct: 2   TYARQLFDQIPDPNIALWNSMFRGYAQSESYRE---IFCEMFERNV------VAWTSMIN 52

Query: 132 GEI--KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189
           G I   DL     +  L+ +     DV+L N ++S Y++ G   E   LF EMP R+V  
Sbjct: 53  GYILSADLVSARRLFDLAPE----RDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMF 108

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
           WN  + G+A++G+   +     +F++M  RN+++W A+I GY  NG   E L  F  M  
Sbjct: 109 WNTVLKGYATNGNVEAL---EGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLS 165

Query: 250 KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
           +  + PN  +LV+VL  C+ L  L  GK +H +A    L  +V + NAL+DMY+KCG ++
Sbjct: 166 ESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIE 225

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            A  VF      KD I+W++++ G  +H +G +A+ L+ +M   G KPD IT +G+L AC
Sbjct: 226 NAISVFRGMD-TKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCAC 284

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
              GL+ +G   + S+ + Y I P  E   C+VDML RAG+L++A+ F++ MPVE    I
Sbjct: 285 THMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVI 344

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489
           W  L+ A  ++ N E+ +LA + LI+LEP+NP+NYV LSN+Y  + RW+ VA L+  M+D
Sbjct: 345 WAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRD 404

Query: 490 RGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            G KK PGCS I ++     F   D+ HP    IY +L  L+ ++R
Sbjct: 405 TGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLR 450



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 46/109 (42%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
             AT+   L   A   +L L K  H    S G   N +V   L+  YA CG    +  VF
Sbjct: 172 NDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVF 231

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
             +  KD+  +N+LI G   +    +AL LF  M  +   PD  T   I
Sbjct: 232 RGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 280


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 177/501 (35%), Positives = 286/501 (57%), Gaps = 11/501 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ---SQLVFNSIQHKDVYLYNS 91
           +L+  KQ H+Q+L  G +++P +  + + + AL   P     S  V ++ Q+  ++ +NS
Sbjct: 21  TLRELKQIHTQLLINGLLNDPQLVGQFVASIAL-NNPNNLHYSNQVLDNSQNPTLFTFNS 79

Query: 92  LINGYVKNHGHNEALELFSNMYYSN--VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           +I  + K+   + +   +S + +S   ++PD++T   + + S ++     G  +HG ++K
Sbjct: 80  MIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVK 139

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            GF  D  + + L+ MY + G    C  +F  + + ++      +S  A  GD      +
Sbjct: 140 YGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGF---A 196

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           R++FD+M  ++  AW AMI+GYVQ G   EAL LF  MQ ++ ++ N+VS+VSVL  CS 
Sbjct: 197 RKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQ-REGVKVNEVSMVSVLSACSH 255

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  L  G+  H +  R +L   ++L  ALIDMY+KCG+++ A  VF      K+  TWSS
Sbjct: 256 LGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMK-EKNVYTWSS 314

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
            + G  ++G G + + L++ M     +P+ IT V VL  C   GL+ EG + + S+   Y
Sbjct: 315 AIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVY 374

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I+P  E   C+VD+ GRAG LD AL+FI +MPV P    WGAL++A  ++ N EM +LA
Sbjct: 375 GIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELA 434

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            + +++LE +N   YV LSN+YA S+ WD V+ +R  M  +G++K PGCS I + G+ H 
Sbjct: 435 SRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHE 494

Query: 510 FSVADKAHPCSVSIYEMLDDL 530
           F V DK+HP    I  ML ++
Sbjct: 495 FFVGDKSHPRYAEIQVMLGEI 515


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 189/569 (33%), Positives = 292/569 (51%), Gaps = 83/569 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           ++ + L    + +++  TK+ H   +  G   + FV   LI AYA CG    +  VFN +
Sbjct: 122 SIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMM 181

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT----LATISKLSGEIKDL 137
           + KDV  +N+++ GY ++     A ELF NM   N+  D  T    +A  S+     + L
Sbjct: 182 EFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEAL 241

Query: 138 NV-------------------------------GMLIHGLSIKIGFVV----------DV 156
           NV                               GM IH  S+K   +           D+
Sbjct: 242 NVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDL 301

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           ++ N+L+ MY KC  F    ++FD++P                                +
Sbjct: 302 MVYNALIDMYSKCRSFKAARSIFDDIP--------------------------------L 329

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSG 275
           + RNV  WT MI G+ Q GD ++AL LF+EM  +   + PN  ++  +L  C+ L  +  
Sbjct: 330 EERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRI 389

Query: 276 GKQIHGFAIRKELNHDVS---LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           GKQIH + +R    +D S   + N LI+MYSKCG +D AR VF DS   K AI+W+S+++
Sbjct: 390 GKQIHAYVLRHH-QYDSSAYFVANCLINMYSKCGDVDTARHVF-DSMSQKSAISWTSMMT 447

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           GYG+HG+G EA+ +++KM   G  PD IT + VL AC   G++++GL  ++S+   Y + 
Sbjct: 448 GYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLT 507

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           P  E  A  +D+L R G+LD+A   +K MP+EP+  +W AL+SA  +H N E+ + A   
Sbjct: 508 PRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNK 567

Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           L+++  EN  +Y  +SN+YA++ RW  VA +R +MK  G+KK PGCSW+     T  F V
Sbjct: 568 LVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFV 627

Query: 513 ADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            D++HP S  IY +L+ LI  ++     P
Sbjct: 628 GDRSHPLSPQIYALLESLIDRIKAMGYVP 656



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 242/481 (50%), Gaps = 35/481 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ H L+      S +     H  I   G  SN F+   L+  Y+ CG   ++ ++F+ I
Sbjct: 12  TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 71

Query: 82  QHK---DVYLYNSLINGYVKNHGHNEALELFSNMYY------SNVSPDDFTLATISKLSG 132
             +   DV  +NS+++ +VK+     AL+LFS M        +N   D  ++  I    G
Sbjct: 72  TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 131

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +K +     +HG +I+ G  +DV + N+L+  Y KCG     + +F+ M  ++V SWN 
Sbjct: 132 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 191

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNV----YAWTAMINGYVQNGDLDEALVLFLEMQ 248
            ++G++ SG+F        +F  M++ N+      WTA+I GY Q G   EAL +F +M 
Sbjct: 192 MVAGYSQSGNFKAAF---ELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 248

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL----------NHDVSLCNAL 298
               + PN V+++SVL  C+SL   S G +IH ++++  L          + D+ + NAL
Sbjct: 249 FSGSL-PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 307

Query: 299 IDMYSKCGSLDCARRVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC--LGS 355
           IDMYSKC S   AR +F+D     ++ +TW+ ++ G+  +G  ++A+ L+ +M+    G 
Sbjct: 308 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 367

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA-CVVDMLGRAGQLDRA 414
            P+  TI  +L AC     I  G +I+  V+  ++   +    A C+++M  + G +D A
Sbjct: 368 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 427

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
                +M  + + S W ++++   MHG  SE  D+  K  ++     P +   L  LYA 
Sbjct: 428 RHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDK--MRKAGFVPDDITFLVVLYAC 484

Query: 474 S 474
           S
Sbjct: 485 S 485



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 163/371 (43%), Gaps = 76/371 (20%)

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D FTL  + K  GE+     G   HGL    GF  +V + N+L++MY +CG   E   +F
Sbjct: 9   DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 68

Query: 180 DEMPQR---NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
           DE+ QR   +V SWN  +S H  S +                    AWTA+        D
Sbjct: 69  DEITQRGIDDVISWNSIVSAHVKSSN--------------------AWTAL--------D 100

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
           L   + L +  +  +    + +S+V++LP C SL  +   K++HG AIR     DV + N
Sbjct: 101 LFSKMTLIVHEKPTNE-RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN 159

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNK---------------------------------- 322
           ALID Y+KCG ++ A +VF    F                                    
Sbjct: 160 ALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPL 219

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D +TW+++++GY   G  HEA+ ++ +M+  GS P+ +TI+ VLSAC   G  ++G+EI+
Sbjct: 220 DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIH 279

Query: 383 NSVINTYRIKPTTE---------ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGA 432
              +    +    +         +   ++DM  +      A      +P+E    + W  
Sbjct: 280 AYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTV 339

Query: 433 LVSASVMHGNS 443
           ++     +G+S
Sbjct: 340 MIGGHAQYGDS 350


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 176/485 (36%), Positives = 277/485 (57%), Gaps = 20/485 (4%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++ AYA+ G+   +  +F+ +  +D   +N L+   V++   ++A ELF  M      P+
Sbjct: 140 MLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRM------PE 193

Query: 121 DFTLATISKLSGEIKDLNVG---MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
              +A  + + G  +  NV    +L   +  +     +V+  N+++S Y +  +  E L+
Sbjct: 194 RDVMAWTTMVDGVARSGNVDEARLLFDSMPER-----NVVSWNAMISGYTRNHRLDEALD 248

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           LF +MP R++ S N+ I+G   + D     R+R++FD+M  RNV  WT M+NGY++    
Sbjct: 249 LFTKMPHRDIASCNIMITGFIQNKDLK---RARKLFDEMPERNVVTWTTMMNGYLKGKQS 305

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
           + +L LF  M L   I PN+V+ +  L  CS L  L  GKQ+H    +     D  + +A
Sbjct: 306 ELSLGLFRGM-LMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSA 364

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           L+++Y+KCG +  AR++F D S  KD I+W+ I++ Y  HG G EA+ LY KM   G +P
Sbjct: 365 LMNVYAKCGEVGLARKLF-DLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRP 423

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           + +T V +LSAC  SGL++EGL+I+ S++N   I    E   C++D+  RAG+LD A   
Sbjct: 424 NDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRL 483

Query: 418 IKTMPVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
           I  + ++P S S+W AL+     HGN  + +LA ++LIQ EP+N   Y  LSN+YAS+ +
Sbjct: 484 IHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTYTLLSNIYASAGK 543

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRG 536
           W   AE+R+ M +RGLKK PGCSWI +  K H F   DK+H  S  IY +L ++  +MR 
Sbjct: 544 WKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHYMMRI 603

Query: 537 AAASP 541
               P
Sbjct: 604 VGTVP 608



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 175/416 (42%), Gaps = 90/416 (21%)

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           +LI   A  G+   ++ +F+    +DV  + +L++ Y +     +A  LF          
Sbjct: 45  RLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARR--- 101

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
                                              +V+   +L+S Y + G   E   LF
Sbjct: 102 -----------------------------------NVVTWTALLSGYARAGLVDEAEVLF 126

Query: 180 DEMPQRNVGSWNVRISGHASSGD----------------------FSLVVRS------RR 211
             MPQRNV SWN  +  +A +G                        +++VRS      R 
Sbjct: 127 QRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRSGSVDKARE 186

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +F +M  R+V AWT M++G  ++G++DEA +LF  M  ++ +  N +             
Sbjct: 187 LFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAM------------- 233

Query: 272 GLSGGKQIHGFA-----IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
            +SG  + H          K  + D++ CN +I  + +   L  AR++F D    ++ +T
Sbjct: 234 -ISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLF-DEMPERNVVT 291

Query: 327 WSSIVSGYGLHGKGHEAVL-LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           W+++++GY L GK  E  L L+  M+  G +P+ +T +G L AC     + EG +++  +
Sbjct: 292 WTTMMNGY-LKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMI 350

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             T   +  T + + ++++  + G++  A      +  E     W  +++A   HG
Sbjct: 351 CKTA-FQVDTFVGSALMNVYAKCGEVGLARKLFD-LSREKDLISWNGIIAAYAHHG 404



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 137/290 (47%), Gaps = 30/290 (10%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK-R 218
           N L+      G+  +   LFD  P+R+V SW   +S +A  G   ++  +R +FD+   R
Sbjct: 44  NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRG---MLRDARSLFDRSDAR 100

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           RNV  WTA+++GY + G +DEA VLF  M      + N VS  ++L   +       G+ 
Sbjct: 101 RNVVTWTALLSGYARAGLVDEAEVLFQRMP-----QRNVVSWNTMLEAYA-----VAGRA 150

Query: 279 IHGFAIRKELN-HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
               A+   +   D    N L+ M  + GS+D AR +F      +D + W+++V G    
Sbjct: 151 GDACALFDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRMP-ERDVMAWTTMVDGVARS 209

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G   EA LL++ M     + ++++   ++S   R+  ++E L+++  +       P  +I
Sbjct: 210 GNVDEARLLFDSM----PERNVVSWNAMISGYTRNHRLDEALDLFTKM-------PHRDI 258

Query: 398 CACVVDMLG--RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
            +C + + G  +   L RA      MP E +   W  +++  +    SE+
Sbjct: 259 ASCNIMITGFIQNKDLKRARKLFDEMP-ERNVVTWTTMMNGYLKGKQSEL 307



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 135/349 (38%), Gaps = 109/349 (31%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T ++   A  G   +++L+F+S+  ++V  +N++I+GY +NH  +EAL+LF+ M + +++
Sbjct: 200 TTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIA 259

Query: 119 P---------DDFTLATISKLSGEIKDLNV------------------------GML--- 142
                      +  L    KL  E+ + NV                        GML   
Sbjct: 260 SCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSG 319

Query: 143 --------------------------IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
                                     +H +  K  F VD  + ++LM++Y KCG+     
Sbjct: 320 IRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLAR 379

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
            LFD   ++++ SWN                                   +I  Y  +G 
Sbjct: 380 KLFDLSREKDLISWN----------------------------------GIIAAYAHHGV 405

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC- 295
             EA+ L+ +MQ  +   PN V+ V +L  CS       G    G  I + + +D S+  
Sbjct: 406 GIEAIHLYEKMQ-GNGYRPNDVTYVVLLSACS-----HSGLVDEGLKIFESMVNDRSIAV 459

Query: 296 -----NALIDMYSKCGSLDCARRVFEDSSFN-KDAITWSSIVSGYGLHG 338
                  LID+ S+ G LD A+R+             WS+++ G   HG
Sbjct: 460 RDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHG 508



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 19/206 (9%)

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            DV    AL+  Y++ G L  AR +F+ S   ++ +TW++++SGY   G   EA +L+ +
Sbjct: 69  RDVVSWTALVSAYARRGMLRDARSLFDRSDARRNVVTWTALLSGYARAGLVDEAEVLFQR 128

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGR 407
           M     + ++++   +L A   +G   +   +++ +       P  +  +   ++ ML R
Sbjct: 129 M----PQRNVVSWNTMLEAYAVAGRAGDACALFDRM-------PVRDAGSWNILLAMLVR 177

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE-NPSNYVS 466
           +G +D+A +    MP E     W  +V      GN +   L + S+    PE N  ++ +
Sbjct: 178 SGSVDKARELFGRMP-ERDVMAWTTMVDGVARSGNVDEARLLFDSM----PERNVVSWNA 232

Query: 467 LSNLYASSRRWDAVAELRTMMKDRGL 492
           + + Y  + R D   +L T M  R +
Sbjct: 233 MISGYTRNHRLDEALDLFTKMPHRDI 258



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 13/216 (6%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H  I       + FV + L+  YA CG+   ++ +F+  + KD+  +N +I  Y  +
Sbjct: 344 KQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHH 403

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               EA+ L+  M  +   P+D T   +          + G++  GL I    V D  +A
Sbjct: 404 GVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACS-----HSGLVDEGLKIFESMVNDRSIA 458

Query: 160 ------NSLMSMYVKCGKFSECLNLFDEMPQRNVGS--WNVRISGHASSGDFSLVVRSRR 211
                   L+ +  + G+  +   L   +  +      W+  + G  + G+ S+   + R
Sbjct: 459 VRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAAR 518

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
              Q +  N   +T + N Y   G   EA  +  EM
Sbjct: 519 NLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEM 554


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 255/452 (56%), Gaps = 36/452 (7%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ +  +D   +N+LI G  ++  H EAL +   M+     PD FTL+T+  +  E  D
Sbjct: 126 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD 185

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           +  GM++HG +IK GF  DV + +SL+ MY  C +                         
Sbjct: 186 IKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQM------------------------ 221

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                D+S+     +VFD     +   W +M+ GY QNG ++EAL +F  M L+  + P 
Sbjct: 222 -----DYSM-----KVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRM-LQAGVRPV 270

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            V+  S++P   +L  L  GKQ+H + IR   N ++ + ++LIDMY KCG++D ARRVF 
Sbjct: 271 PVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFN 330

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
               + D ++W++++ GY LHG   EA +L+ +M     KP+ IT + VL+AC  +GL++
Sbjct: 331 GIQ-SPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVD 389

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G + +NS+ N Y   P+ E CA + D LGRAG LD A +FI  M ++P+ S+W  L+ A
Sbjct: 390 NGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRA 449

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N+ + +   K + +LEP++  ++V LSN+Y++S RW+  A+LR  M+ +G+KK P
Sbjct: 450 CRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEP 509

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
            CSWI +  K H F   DK+HP    I + L+
Sbjct: 510 ACSWIEVKNKLHVFIAHDKSHPWYDRIIDALN 541



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 180/375 (48%), Gaps = 27/375 (7%)

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML---IHGLSIKIGFVVDVILANS 161
           A+ LF  M  S V+P     A++         L +  L   +H L+I+ G   D   AN+
Sbjct: 31  AISLFLQMRAS-VAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANA 89

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+++ +K   F               G+      G   S  +  +   R+VFD+M  R+ 
Sbjct: 90  LLNLCIKLPGF-----------HHPFGTNGPSGEGGLESAAYESM---RKVFDEMLERDA 135

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            +W  +I G  ++    EAL +  EM  +D   P+  +L +VLP  +    +  G  +HG
Sbjct: 136 VSWNTLILGCAEHKRHQEALSMVREM-WRDGFMPDTFTLSTVLPIFAECADIKRGMVVHG 194

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           +AI+   ++DV + ++LIDMY+ C  +D + +VF DS  + DA+ W+S+++GY  +G   
Sbjct: 195 YAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVF-DSFSDCDAVLWNSMLAGYAQNGSVE 253

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           EA+ ++ +M+  G +P  +T   ++ A G   L+  G +++  +I   R      I + +
Sbjct: 254 EALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRA-RFNDNIFISSSL 312

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSI--WGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           +DM  + G +D A      +    SP I  W A++    +HG +    + ++ + +L   
Sbjct: 313 IDMYCKCGNVDIARRVFNGI---QSPDIVSWTAMIMGYALHGPTTEAFVLFERM-ELGNV 368

Query: 460 NPSNYVSLSNLYASS 474
            P++   L+ L A S
Sbjct: 369 KPNHITFLAVLTACS 383



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 162/383 (42%), Gaps = 47/383 (12%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L + A    +K     H   +  G  ++ FV + LI  YA C Q   S  VF+S 
Sbjct: 172 TLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSF 231

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
              D  L+NS++ GY +N    EAL +F  M  + V P   T +++    G +  L +G 
Sbjct: 232 SDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGK 291

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   I+  F  ++ +++SL+ MY KCG       +F+ +   ++ SW           
Sbjct: 292 QLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSW----------- 340

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  TAMI GY  +G   EA VLF  M+L + ++PN ++ +
Sbjct: 341 -----------------------TAMIMGYALHGPTTEAFVLFERMELGN-VKPNHITFL 376

Query: 262 SVLPTCSSLIGL--SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +VL  CS   GL  +G K  +  + +      +  C AL D   + G LD A     +  
Sbjct: 377 AVLTACSH-AGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMK 435

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP--DIITIVGVLSACGRSGLINE 377
               +  WS+++    +H     A  +  K+  L  K     + +  + SA GR    NE
Sbjct: 436 IKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGR---WNE 492

Query: 378 GLEIYNSVINTYRIKPTTEICAC 400
             ++  S+    RIK   +  AC
Sbjct: 493 AAQLRKSM----RIKGMKKEPAC 511



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 109/260 (41%), Gaps = 36/260 (13%)

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK---VSLVSVLPTCSSLIGLSGGKQI 279
           +W   I      G    A+ LFL  Q++  + P      SL + L +C+ L   +    +
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFL--QMRASVAPRSSVPASLPAALKSCAGLGLCTLAASL 71

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKC---------------GSLDCA-----RRVFEDSS 319
           H  AIR     D    NAL+++  K                G L+ A     R+VF D  
Sbjct: 72  HALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVF-DEM 130

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +DA++W++++ G   H +  EA+ +  +M   G  PD  T+  VL        I  G+
Sbjct: 131 LERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGM 190

Query: 380 EIYNSVINTYRIKPTTE----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
                V++ Y IK   +    + + ++DM     Q+D ++    +   +    +W ++++
Sbjct: 191 -----VVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFS-DCDAVLWNSMLA 244

Query: 436 ASVMHGNSEMQDLAYKSLIQ 455
               +G+ E     ++ ++Q
Sbjct: 245 GYAQNGSVEEALGIFRRMLQ 264


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 179/505 (35%), Positives = 277/505 (54%), Gaps = 51/505 (10%)

Query: 35  SLKLT-KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF--NSIQHKDVYLYNS 91
           SL +T KQ H  +   G +  PFV T LI+ Y  C     ++ +F  N    K    YNS
Sbjct: 24  SLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNS 83

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           L++GY  N    + + LF  M    V  +  T+  + +  G   +L +GM +HG  +K G
Sbjct: 84  LLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFG 143

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
             +D  + N L++MYVK G+  +C                                  R+
Sbjct: 144 LDMDSSVGNCLLTMYVKSGEI-DC---------------------------------GRK 169

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +FD+M R+ +  W AMINGY QNG  +  L L+ EM+ K    P+ ++LV VL +C+ L 
Sbjct: 170 LFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKG-FCPDPLTLVGVLSSCAHLG 228

Query: 272 GLSGGKQIH------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            LS GK++       GF+    LN      NAL++MY++CG+L  AR +F D    K  +
Sbjct: 229 ALSVGKEVERKMEGFGFSSNPFLN------NALVNMYARCGNLKKARDIF-DGMPVKSVV 281

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W++I+ GYG+HG+G  AV L+++M+  G KPD    V VLSAC  +GL N+GL+ +  +
Sbjct: 282 SWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVM 341

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
              Y ++P  E  +C+VD+LGRAG+L+ A + I++M V    ++WGAL+ A  +H N E+
Sbjct: 342 ERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVEL 401

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            +LA++ +I+LEP N   YV LSN+Y  +   + +  +R +M+ R LKK PGCS++   G
Sbjct: 402 AELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKG 461

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDL 530
           + H F   D+ HP +  IY+ L++L
Sbjct: 462 RVHLFFAGDRNHPQTNEIYKKLNEL 486



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 160/344 (46%), Gaps = 36/344 (10%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M  S  SP+ FT     K    +     G  +H    K G +++  +  SL+SMY KC  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                 LFDE PQ                                 R+    + ++++GY
Sbjct: 61  IDNARKLFDENPQ--------------------------------SRKLTVCYNSLLSGY 88

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
             N  + + +VLF EM+ +  +E N V+++ ++  C     L  G  +HGF ++  L+ D
Sbjct: 89  ALNSRVKDVVVLFCEMR-ELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMD 147

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
            S+ N L+ MY K G +DC R++F++    K  ITW+++++GY  +G  +  + LY +M 
Sbjct: 148 SSVGNCLLTMYVKSGEIDCGRKLFDEMP-RKGLITWNAMINGYAQNGLANNVLELYKEME 206

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G  PD +T+VGVLS+C   G ++ G E+    +  +       +   +V+M  R G L
Sbjct: 207 SKGFCPDPLTLVGVLSSCAHLGALSVGKEVERK-MEGFGFSSNPFLNNALVNMYARCGNL 265

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            +A D    MPV+   S W A++    MHG  E+    +  +I+
Sbjct: 266 KKARDIFDGMPVKSVVS-WTAIIGGYGMHGQGEVAVGLFDEMIR 308


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 172/530 (32%), Positives = 285/530 (53%), Gaps = 36/530 (6%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L T   +   T+   L   A+ R     +Q H   +    +SN  V+  ++  Y  C   
Sbjct: 375 LKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKAL 434

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
            ++  +F+ ++ +D   +N++I    +N    E L  F++M +S + PDDFT  ++ K  
Sbjct: 435 AEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKAC 494

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
              + LN GM IH   IK G   D  +  +L+ MY KCG                     
Sbjct: 495 AGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCG--------------------- 533

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                        ++ ++ ++ D+ +++ + +W A+I+G+      ++A   F  M L+ 
Sbjct: 534 -------------MIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRM-LEM 579

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            + P+  +  +VL TC++L  +  GKQIH   I++EL  DV +C+ L+DMYSKCG++  +
Sbjct: 580 GVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDS 639

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
           + +FE +  N+D +TW++++ GY  HG G EA+ L+  M  +  KP+  T V VL AC  
Sbjct: 640 QLMFEKAP-NRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAH 698

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
            GL+++GL  ++ +++ Y + P +E  +C+VD+LGR+G++D AL+ ++ MP E    IW 
Sbjct: 699 MGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWR 758

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
            L+S   +HGN E+ + A ++L+QL+P++ S  V LSN+YA +  W  V+E+R MM+   
Sbjct: 759 NLLSVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNK 818

Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           LKK PGCSWI +  + H F V DK HP    IYE L  LI  M+     P
Sbjct: 819 LKKEPGCSWIELKDEVHAFLVGDKGHPRDEEIYEKLGVLIGEMQSVGYIP 868



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 137/534 (25%), Positives = 243/534 (45%), Gaps = 80/534 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  H  Q  +   SL   KQ+H++++  G     FVS  L+  Y  C     +  VF+ +
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110

Query: 82  QHKDVYLYNSLINGY-------------------------------VKNHGHNEALELFS 110
             +DV  YNS+I+GY                               ++N    +++++F 
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFL 170

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M    V  D  +LA + K  G +++ ++G+ +HGL +K GF  DV+  ++L+ MY KC 
Sbjct: 171 EMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCK 230

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
           +  + L++F E+P++N  SW                                  +AMI G
Sbjct: 231 RLDDSLSVFSELPEKNWVSW----------------------------------SAMIAG 256

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
            VQN    E L LF EMQ    +  ++    S+  +C++L  L  GK++H  A++     
Sbjct: 257 CVQNDRNVEGLELFKEMQ-GVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGS 315

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI-TWSSIVSGYGLHGKGHEAVLLYNK 349
           D+ +  A +DMY+KCG +  A++V   SS  K ++ ++++I+ GY    +G +A+  +  
Sbjct: 316 DIIVGTATLDMYAKCGRMADAQKVL--SSMPKCSLQSYNAIIVGYARSDRGFQALKSFQL 373

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGR 407
           ++  G   D IT+ G L+AC       EG +++   + +  +   + IC    ++DM G+
Sbjct: 374 LLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISM---SNICVANAILDMYGK 430

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI--QLEPENPSNYV 465
              L  A D    M    + S W A+++A   +GN E     + S+I  ++EP++ + Y 
Sbjct: 431 CKALAEASDLFDMMERRDAVS-WNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFT-YG 488

Query: 466 SLSNLYASSRRWDAVAEL--RTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           S+    A  +  +   E+  R +    G     G + + ++ K      ADK H
Sbjct: 489 SVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIH 542


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 165/488 (33%), Positives = 268/488 (54%), Gaps = 43/488 (8%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           HS ++ LG + + FV   LI AY+  G  + ++ VF+ +  +DV  +N+ +   V+    
Sbjct: 28  HSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVR---- 83

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
                             +  LA + KL  E+ +                  D +  N++
Sbjct: 84  ------------------EGELAGVRKLFDEMPEK-----------------DTVSWNTI 108

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           +  Y K G+      LF  MP+RNV SW+  +SG+   GD  +   +R +FD+M  +N+ 
Sbjct: 109 LDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEM---ARVIFDKMPSKNLV 165

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            WT M++   Q G +DEA  LF +M+ +  +E +  ++VS+L  C+    LS GK+IH +
Sbjct: 166 TWTIMVSACAQKGLVDEAGKLFAQMK-EASVELDVAAVVSILAACAESGSLSLGKRIHRY 224

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
             ++ L     +CNALIDM+ KCG ++ A  VF+  +  KD+++W+SI+ G+ +HG G +
Sbjct: 225 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 284

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ L+ +M   G  PD +T++ VLSAC   G ++EG   ++++   Y I P  E   C++
Sbjct: 285 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 344

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGR G +  A+D IK+MP EP+  IWG+L+SA  +H N E  ++A   L +L+P N  
Sbjct: 345 DLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 404

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
           NY  LSN+YA + +W  +A+ R  MK  G +K+ G SW+ ++   H F+V D+ H  S  
Sbjct: 405 NYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQ 464

Query: 523 IYEMLDDL 530
           I EM+D L
Sbjct: 465 ISEMVDRL 472



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/336 (19%), Positives = 123/336 (36%), Gaps = 102/336 (30%)

Query: 255 PNKVSLV-SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           P + S   S L    S  G++  + +H   ++     D  + NALID YSK G    AR+
Sbjct: 2   PRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 61

Query: 314 VFE------------------------------DSSFNKDAITWSSIVSGYGLHGKGHEA 343
           VF+                              D    KD ++W++I+ GY   G+   A
Sbjct: 62  VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 121

Query: 344 VLLYNKM-------------------------VCLGSKP--DIITIVGVLSACGRSGLIN 376
             L+ +M                         V     P  +++T   ++SAC + GL++
Sbjct: 122 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 181

Query: 377 EGLEIYNSV----------------------------------INTYRIKPTTEICACVV 402
           E  +++  +                                  +    +  +T +C  ++
Sbjct: 182 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 241

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE--N 460
           DM  + G ++RA     T  V+     W +++    MHG+    D A +   Q++ +  N
Sbjct: 242 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHG---DKALELFAQMKQQGFN 298

Query: 461 PSNYVSLSNLYASSRRWDAVAELR----TMMKDRGL 492
           P + V++ N+ ++      V E R     M +D G+
Sbjct: 299 P-DAVTMINVLSACTHMGFVDEGRRHFSNMERDYGI 333



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           A V   L   A   SL L K+ H  +       +  V   LI  +  CG   ++  VF++
Sbjct: 200 AAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDT 259

Query: 81  -IQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATI 127
               KD   +NS+I G+   HGH ++ALELF+ M     +PD  T+  +
Sbjct: 260 ETVQKDSVSWNSIIGGFAM-HGHGDKALELFAQMKQQGFNPDAVTMINV 307


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 194/573 (33%), Positives = 293/573 (51%), Gaps = 81/573 (14%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L TS ++T  +    L+     +S++  KQ  +QIL  G   +     K +     C  P
Sbjct: 24  LSTSSHFTKKSCIFLLK---NCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVC---CTDP 77

Query: 72  TQSQL-----VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
           +   L     +FN I    +++YN +I  + KN    +A+ LF  +    +SPD+FT   
Sbjct: 78  SIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPF 137

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           + K  G + ++  G  ++G  +K G   D  + NSLM MY + G+      +F+EMPQR+
Sbjct: 138 VFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRD 197

Query: 187 VGSWNVRISGHASSGDFSLVV--------------------------------RSRRVFD 214
           V SWNV ISG+     +   V                                 +R +F+
Sbjct: 198 VVSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFE 257

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +   R+V  WTAMINGYVQ    D+A+ LF EMQ+K R+ P++ +LV++L          
Sbjct: 258 RSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIK-RVSPDRFTLVALLT--------- 307

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
                           D  +  ALI+MY+KCG ++ +  +F      KD  +W+SI+ G 
Sbjct: 308 ----------------DAVVGTALIEMYAKCGFIEKSLEIFNGLK-EKDTASWTSIICGL 350

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            ++GK  +A+ L+ +MV  G KPD IT +GVLSAC   GL+ EG + + S+   Y+I+P 
Sbjct: 351 AMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPK 410

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMP---VEPSPSIWGALVSASVMHGNSEMQDLAYK 451
            E   C++D+LGRAGQLD A + I+  P    E    ++GAL+SA   HGN EM +   K
Sbjct: 411 LEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAK 470

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            L+ +E  + S +  L+N+YAS+ RW+ V ++R  MKD G+KK PGCS + ++G  H F 
Sbjct: 471 RLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFL 530

Query: 512 VADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
           V D +HP    IY MLD +        A P LG
Sbjct: 531 VGDASHPEMREIYSMLDSI--------AKPLLG 555


>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 513

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 176/493 (35%), Positives = 276/493 (55%), Gaps = 18/493 (3%)

Query: 31  ATHRSLKLTKQSHSQILSLGHISNP-------FVSTKLITAYALCGQPTQSQLVFNSIQH 83
           A H   K   Q  +Q+     I+NP        ++ KLI A A       +QL+F  + +
Sbjct: 19  AEHFQTKQLLQIQAQL-----ITNPPLSLHPNLIAVKLIGACAANANLYHAQLIFAQLPN 73

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYY--SNVSPDDFTLATISKLSGEIKDLNVGM 141
            +V+ +N++I  ++       AL  F+      S  +P+++   ++ K    ++ +  G+
Sbjct: 74  PNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIADGL 133

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H + IK G   ++ L  SL+ MY K  + +    +FDEMP R+V SWN  +SG+   G
Sbjct: 134 KVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYCLCG 193

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D      +RRVFDQM  R+V +W AMI GYVQNG   +A+ +F EMQ    + P+ V+LV
Sbjct: 194 DLE---SARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLV 250

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVL  C+ +  L  G+ I  F   +    ++ L NALIDMY+KCG+++ ARR+F D    
Sbjct: 251 SVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIF-DGMRE 309

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D I+WS+++ G G HG   EA   Y+KM+  G KP+ +T +G+LSAC  +GL+++G+E+
Sbjct: 310 RDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIEL 369

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++ +I  YRI P      CV+D+L RAG+LD A D I +MP+EP+  +WGAL+    +H 
Sbjct: 370 FSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGGCRIHK 429

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           +    +   + L++L+ E   +YV ++   AS  R D  A     M+ +G+ K PGCS I
Sbjct: 430 DFRRGERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQHKGIIKDPGCSKI 489

Query: 502 SIHGKTHCFSVAD 514
            +H   H F   D
Sbjct: 490 EVHNTVHEFKECD 502


>gi|297827241|ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327342|gb|EFH57762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 669

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 171/498 (34%), Positives = 285/498 (57%), Gaps = 6/498 (1%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L +Q H  ++  G  S+ FV   LIT Y  C     ++ VF+ +  +DV  +NS+I+GY 
Sbjct: 150 LARQVHGFVIRGGSDSDVFVGNGLITYYTKCDNIESARKVFDEMSDRDVVSWNSMISGYS 209

Query: 98  KNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           ++    +  +L+  M   S+  P++ T+ ++ +  G+  DL  GM +H   I+    +D+
Sbjct: 210 QSGSFEDCKKLYKAMLGCSDFKPNEVTVISVLQACGQSSDLVFGMEVHKKMIENHIQMDL 269

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            L N+++  Y KCG       LFDEM +++  ++   ISG+ + G   LV  +  +F +M
Sbjct: 270 SLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHG---LVKEAMALFSEM 326

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           +   +  W A+I+G +QN   +E +  F EM ++    PN V+L S+LP+ +    L GG
Sbjct: 327 ESIGLSTWNAVISGLMQNNHHEEVINSFREM-IRCGSRPNTVTLSSLLPSLTYSSNLKGG 385

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K+IH FAIR   ++++ +  ++ID Y+K G L  A+RVF D+  ++  I W++I++ Y +
Sbjct: 386 KEIHAFAIRNGSDNNIYVTTSIIDNYAKLGFLLGAQRVF-DNCKDRSLIVWTAIITAYAV 444

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG    A  L+++M CLG+KPD +T+  VLSA   SG  ++   I++S++  Y I+P  E
Sbjct: 445 HGDSDSACSLFDQMQCLGTKPDNVTLTAVLSAFAHSGDSDKAQHIFDSMLTKYNIEPGVE 504

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             AC+V +L RAG+L  A++FI  MP+EP   +WGAL++ + + G+ E+   A   L ++
Sbjct: 505 HYACMVSVLSRAGKLSNAMEFISKMPIEPIAKVWGALLNGASVLGDVEIARFACDRLFEM 564

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           EPEN  NY  ++NLY  + RW+    +R  MK  GLKK PG SWI  +     F   D +
Sbjct: 565 EPENTGNYTIMANLYTQAGRWEEAEVVRDKMKRIGLKKIPGTSWIETNKGLRSFIAKDSS 624

Query: 517 HPCSVSIYEMLDDLILIM 534
              S  +Y++++ L+  M
Sbjct: 625 CERSKEMYDIIEGLVESM 642



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 209/466 (44%), Gaps = 89/466 (19%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H +Q    HR      Q H++I+      + F+++KLI+ Y    +  Q+  VF+ I  +
Sbjct: 27  HLIQHFTRHRLPLHALQLHARIVVFSIAPDNFLASKLISFYTRQNRFHQALHVFDEITVR 86

Query: 85  DVYLYNSLINGYVKNHGHNEALELF-----SNMYYSNVS-PDDFTLATISKLSGEIKDLN 138
           + + YN+L+  Y     + +A  LF     S+ Y S  + PD  +++ + K      D  
Sbjct: 87  NAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSGAARPDSISISCVLKALSGCDDFW 146

Query: 139 VGML---IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           +G L   +HG  I+ G   DV + N L++ Y KC        +FDEM  R+V SWN  IS
Sbjct: 147 LGSLARQVHGFVIRGGSDSDVFVGNGLITYYTKCDNIESARKVFDEMSDRDVVSWNSMIS 206

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
           G++ SG F                                  ++   L+  M      +P
Sbjct: 207 GYSQSGSF----------------------------------EDCKKLYKAMLGCSDFKP 232

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N+V+++SVL  C     L  G ++H   I   +  D+SLCNA+I  Y+KCGSLD AR +F
Sbjct: 233 NEVTVISVLQACGQSSDLVFGMEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALF 292

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL---------------------- 353
           ++ S  KD++T+ +I+SGY  HG   EA+ L+++M  +                      
Sbjct: 293 DEMS-EKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAVISGLMQNNHHEEVI 351

Query: 354 ---------GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT---YRIKPTTEICACV 401
                    GS+P+ +T+  +L +   S  +  G EI+   I       I  TT I    
Sbjct: 352 NSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGSDNNIYVTTSI---- 407

Query: 402 VDMLGRAGQL---DRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +D   + G L    R  D  K    + S  +W A+++A  +HG+S+
Sbjct: 408 IDNYAKLGFLLGAQRVFDNCK----DRSLIVWTAIITAYAVHGDSD 449


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 170/504 (33%), Positives = 283/504 (56%), Gaps = 44/504 (8%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
            K+ H  +L +G   + FV + L+  Y   G    +Q VF  +  +DV L+N++INGY K
Sbjct: 129 VKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAK 188

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
               +EALE+F  M+   V+P  FT+  I  +     DL+ G  +HG+ +K+G+   V +
Sbjct: 189 IGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSV 248

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
           +N+L+ MY KC    + L                                   +F+ +  
Sbjct: 249 SNALIDMYGKCKHIGDAL----------------------------------IIFEMINE 274

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           +++++W ++I+ + Q GD D  L LF +M L   I P+ V++ +VLP CS L  L  G++
Sbjct: 275 KDIFSWNSIISVHEQCGDHDGTLRLFDKM-LGSGILPDLVTITTVLPACSHLAALMHGRE 333

Query: 279 IHGFAIRKELNHD--------VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
           IHG+ I   L  D        + + NA++DMY+KCGS++ A ++F DS   KD  +W+ +
Sbjct: 334 IHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIF-DSMSKKDVASWNIM 392

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           + GYG+HG   EA+ ++++M     KP+ +T+VGVLSAC  +G ++ G      + +T+ 
Sbjct: 393 IMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFG 452

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           + PT E   CV+DMLGRAG L+ A + ++ MP++ +P +W AL+ A  +HGN+E+ ++A 
Sbjct: 453 VIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAA 512

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + ++QLEPE+  +YV +SN+Y    R++ V E+R  MK++ +KK+PGCSWI +    H F
Sbjct: 513 RQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIELKDGVHVF 572

Query: 511 SVADKAHPCSVSIYEMLDDLILIM 534
              D+ H    ++   L D+  I+
Sbjct: 573 RTGDRTHSELNALTNQLCDIGFIL 596



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 147/335 (43%), Gaps = 52/335 (15%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L V A+   L   K  H  ++ +G+ S   VS  LI  Y  C     + ++F  I
Sbjct: 213 TITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMI 272

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD++ +NS+I+ + +   H+  L LF  M  S + PD  T+ T+      +  L  G 
Sbjct: 273 NEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGR 332

Query: 142 LIHGLSI--------KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
            IHG  I        + G V +++++N++M MY KCG  +  L +FD M +++V SWN+ 
Sbjct: 333 EIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNI- 391

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                                            MI GY  +G   EAL +F +M  +   
Sbjct: 392 ---------------------------------MIMGYGMHGYALEALGMFSQM-CEAEF 417

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGK----QIHG-FAIRKELNHDVSLCNALIDMYSKCGSL 308
           +PN+V+LV VL  C+    +S G+    Q+   F +   + H       +IDM  + G L
Sbjct: 418 KPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEH----YTCVIDMLGRAGHL 473

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           + A  + +      + + W +++    LHG    A
Sbjct: 474 EDAYEIVQKMPIQANPVVWRALLGACRLHGNAELA 508



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 28/201 (13%)

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N    V+ L +C+    L+ GKQ+H   I    +       +LI+MYSKCG +  A  VF
Sbjct: 10  NVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVF 69

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR---- 371
            D    ++   +++I+SG+  +G   +    Y KM   G  PD  T   V+  C      
Sbjct: 70  YDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV 129

Query: 372 ----SGLINEGLE----IYNSVINTYRIKPTTE---------------ICACVVDMLGRA 408
                 L+  GLE    + ++++NTY    + E               +   +++   + 
Sbjct: 130 KKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKI 189

Query: 409 GQLDRALDFIKTMPVEP-SPS 428
           G LD AL+  + M V+  +PS
Sbjct: 190 GCLDEALEVFRRMHVKGVAPS 210


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 168/508 (33%), Positives = 283/508 (55%), Gaps = 37/508 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R++   +Q H+ +++ G + +  ++ KL+  YA       +  +F+ +  +D   ++ ++
Sbjct: 14  RNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMV 73

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            G+ K   H      F  +    V+PD++TL  + +   +  DL +G +IH + +K G +
Sbjct: 74  GGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLL 133

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            D  +  SL+ MY KC                                   +V  ++R+F
Sbjct: 134 SDHFVCASLVDMYAKC----------------------------------IVVEDAQRLF 159

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           ++M  +++  WT MI  Y  + +  E+LVLF  M+ ++ + P+KV++V+V+  C+ L  +
Sbjct: 160 ERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMR-EEGVVPDKVAMVTVVNACAKLGAM 217

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
              +  + + +R   + DV L  A+IDMY+KCGS++ AR VF D    K+ I+WS++++ 
Sbjct: 218 HRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVF-DRMKEKNVISWSAMIAA 276

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG HG+G +A+ L++ M+     P+ +T V +L AC  +GLI EGL  +NS+   + ++P
Sbjct: 277 YGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRP 336

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             +   C+VD+LGRAG+LD AL  I+ M VE    +W AL+ A  +H   E+ + A  SL
Sbjct: 337 DVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSL 396

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           ++L+P+NP +YV LSN+YA + +W+ VA+ R MM  R LKK PG +WI +  KT+ FSV 
Sbjct: 397 LELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVG 456

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASP 541
           D++HP S  IYEML  LI  +  A   P
Sbjct: 457 DRSHPQSKEIYEMLMSLIKKLEMAGYVP 484



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 142/332 (42%), Gaps = 48/332 (14%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           VT  NYT   V   ++       L++ +  H  +L  G +S+ FV   L+  YA C    
Sbjct: 97  VTPDNYTLPFV---IRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVE 153

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            +Q +F  +  KD+  +  +I  Y   + + E+L LF  M    V PD   + T+     
Sbjct: 154 DAQRLFERMLSKDLVTWTVMIGAYADCNAY-ESLVLFDRMREEGVVPDKVAMVTVVNACA 212

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
           ++  ++     +   ++ GF +DVIL  +++ MY KCG       +FD M ++NV SW  
Sbjct: 213 KLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISW-- 270

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                                           +AMI  Y  +G   +A+ LF  M L   
Sbjct: 271 --------------------------------SAMIAAYGYHGRGKDAIDLF-HMMLSCA 297

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGS 307
           I PN+V+ VS+L  CS    +  G +         A+R ++ H       ++D+  + G 
Sbjct: 298 ILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKH----YTCMVDLLGRAGR 353

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           LD A R+ E  +  KD   WS+++    +H K
Sbjct: 354 LDEALRLIEAMTVEKDERLWSALLGACRIHSK 385


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 181/540 (33%), Positives = 283/540 (52%), Gaps = 38/540 (7%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L +  H+  +  G   +PFV++ L+ +Y   G    ++ VF+ +  K+V  +++LI GY 
Sbjct: 35  LARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYS 94

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFT--------------LATISKLS------------ 131
                  A  L   M  + V P+  T              L  ++ L             
Sbjct: 95  ARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDAT 154

Query: 132 ---------GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
                    G++K+++VG  +HG  +K G  +D  +  +L+ MY KCG+  E + +F E 
Sbjct: 155 GVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHES 214

Query: 183 PQRNVGSWNVRISGHASSGDFS-LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
              +V S N  ++G + +   S  ++  R    +    NV +WT+++   VQNG   EA+
Sbjct: 215 SHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAV 274

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            LF  MQ    +EPN V++  VLP  +++  L  G+  H F++RK   HDV + +AL+DM
Sbjct: 275 DLFRTMQ-SIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDM 333

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y+KCG    AR +F D+  +++ ++W++++ GY +HG    AV L+  M     KPD++T
Sbjct: 334 YAKCGKARHARTIF-DAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVT 392

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
              VL AC ++GL  EG   +N +   + I P  E  AC+V +LGR+G+LD A D I  M
Sbjct: 393 FTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEM 452

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
           P EP   IWG+L+ +  ++GN  + ++A + L QLEP N  NYV LSN+YAS + WD V 
Sbjct: 453 PFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVN 512

Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            +R  MK+ GLKK  GCSWI I  K H     D +HP   +I E L+ L + M     +P
Sbjct: 513 RVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAP 572



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 132/345 (38%), Gaps = 79/345 (22%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           + + + KQ H  ++  G   +  V T LI  Y  CG+  +   VF+   H DV   N+L+
Sbjct: 167 KEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALV 226

Query: 94  NGYVKN----------------------------------HGHN-EALELFSNMYYSNVS 118
            G  +N                                  +G + EA++LF  M    V 
Sbjct: 227 AGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVE 286

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           P+  T+  +      +  L  G   H  S++ GF+ DV + ++L+ MY KCGK      +
Sbjct: 287 PNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTI 346

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           FD MP RNV SWN  I G                                  Y  +GD  
Sbjct: 347 FDAMPSRNVVSWNAMIGG----------------------------------YAMHGDAA 372

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVS 293
            A+ LF  MQ K + +P+ V+   VL  CS       G++       G  I   + H   
Sbjct: 373 NAVQLFCSMQ-KCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYA- 430

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
               ++ +  + G LD A  +  +  F  D+  W S++    ++G
Sbjct: 431 ---CMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYG 472



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 13/171 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   + +H   L  G + + +V + L+  YA CG+   ++ +F+
Sbjct: 289 SVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFD 348

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI------SKLSGE 133
           ++  ++V  +N++I GY  +     A++LF +M      PD  T   +      + L+ E
Sbjct: 349 AMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEE 408

Query: 134 IKD-LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
            +   N     HG+S ++           ++++  + GK  E  +L +EMP
Sbjct: 409 GRRYFNEMQQGHGISPRMEHYA------CMVTLLGRSGKLDEAYDLINEMP 453


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 170/510 (33%), Positives = 285/510 (55%), Gaps = 37/510 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R+L   +Q H+++++  +    F+ T+L+T Y  CG    ++ V + +  + V  + ++I
Sbjct: 24  RALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMI 83

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +GY +   H EAL+LF  M  +   P+++TLAT+       + +  G  +H L +K  F 
Sbjct: 84  SGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFE 143

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
             + + +SL+ MY K     E                                  +RRVF
Sbjct: 144 SHMFVGSSLLDMYAKSENIQE----------------------------------ARRVF 169

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D +  R+V + TA+I+GY Q G  +EAL LF ++   + ++ N V+  +++   S L  L
Sbjct: 170 DTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL-YSEGMQCNHVTFTTLVTALSGLASL 228

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GKQ+H   +RKEL   V+L N+LIDMYSKCG L  +RRVF D+   +  ++W++++ G
Sbjct: 229 DYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVF-DNMLERSVVSWNAMLMG 287

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG HG GHE + L+ K +    KPD +T++ VLS C   GL++EGL+I+++V+       
Sbjct: 288 YGRHGLGHEVISLF-KDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALL 346

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
            T    C++D+LGR+G+L++AL+ I+ MP E +PSIWG+L+ A  +H N  + +L  + L
Sbjct: 347 HTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKL 406

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           +++EPEN  NYV LSN+YA++  W  V ++R +M ++ + K PG SWI +    H F  +
Sbjct: 407 LEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSS 466

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           ++ HP    I   + ++ + ++ A   P L
Sbjct: 467 ERFHPSKKDINAKIKEIFVDIKAAGFVPDL 496



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 2/161 (1%)

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           + +  C     L  G+Q+H   I       V L   L+ MY +CG+LD AR V  D    
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVL-DRMPE 73

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +  ++W++++SGY    +  EA+ L+ KM+  G  P+  T+  VL++C     I +G ++
Sbjct: 74  RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQV 133

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
           ++ ++ T   +    + + ++DM  ++  +  A     T+P
Sbjct: 134 HSLLVKT-NFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 173


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 259/458 (56%), Gaps = 36/458 (7%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ +  +DV  +N+L+ G  +   H+EAL L   M+     PD FTL+++  +  E  D
Sbjct: 127 VFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECAD 186

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           +  G  +HG +++ GF  DV + +SL+ MY  C +                         
Sbjct: 187 VKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTR------------------------- 221

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                D+S+     +VFD +  R+   W +++ G  QNG ++EAL +F  M L+  + P 
Sbjct: 222 ----TDYSV-----KVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRM-LQTGVRPV 271

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            V+  S++P C +L  L  GKQ+H + IR     +V + ++LIDMY KCG +  A  +F 
Sbjct: 272 PVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIF- 330

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D   + D ++W++++ GY LHG   EA++L+ +M    +KP+ IT + VL+AC  +GL++
Sbjct: 331 DRMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVD 390

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +G + + S+ + Y I PT E CA + D+LGRAG+LD A +FI  M ++P+ S+W  L+ A
Sbjct: 391 KGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRA 450

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N+ + +   K +++LEP +  ++V LSN+Y++S RW+  A LR  M+ +G+KK P
Sbjct: 451 CRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDP 510

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
            CSWI +  K H F   D++HPC +    + + L  I+
Sbjct: 511 ACSWIEVKNKLHVFVAHDRSHPCCIECSTLSEHLAAII 548


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 199/557 (35%), Positives = 300/557 (53%), Gaps = 57/557 (10%)

Query: 31  ATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL--CGQPTQSQLVFNSIQHKDVYL 88
           ++ R LKL    H+QI+  G  +      KLI+  A+   G    +Q +F+ I   + ++
Sbjct: 125 SSMRGLKLL---HAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFM 181

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           YNSLI GY  +    +A+ LF  M  S +SP++FTL  + K  G        +L+HGL+I
Sbjct: 182 YNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAI 241

Query: 149 KIG-----FV------------------------------------------VDVILANS 161
           K+G     FV                                          +D+I+ N+
Sbjct: 242 KLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNA 301

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L  MY KCG       +FD   ++NV SW   IS +A  G   +   +R++FDQM  +NV
Sbjct: 302 LXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEV---ARQIFDQMPGKNV 358

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            +W +MI+ Y++ G   EAL LF +M+   R+ P++ +LVS+L  CS L  L  GK+IH 
Sbjct: 359 VSWNSMISCYLREGQYREALDLFNKMR-NSRVVPDEATLVSILAACSQLGDLVMGKKIHN 417

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           + +  +  + V+L N+LIDMY+KCG +  A  +F +    K+ ++W+ I+    LHG G 
Sbjct: 418 YILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMP-GKNLVSWNVIIGALALHGCGL 476

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           EA+ L+ +M   G+ PD IT+ G+LSAC  SGL++ GL  ++ +   YR+    E  AC+
Sbjct: 477 EAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACM 536

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           VD+LGR G L  A++ I  MP++P   +WGAL+ A  +HGN E+     K L++LEP + 
Sbjct: 537 VDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSG 596

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
             YV +SN+Y  ++RW+ V ++R +M DRG+KK    S I I G  + F V DK H  S 
Sbjct: 597 GLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISS 656

Query: 522 SIYEMLDDLILIMRGAA 538
           SIY MLD L   +R A 
Sbjct: 657 SIYAMLDQLTDHLRSAG 673



 Score = 38.9 bits (89), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            AT+   L   +    L + K+ H+ ILS        +   LI  YA CG    +  +F 
Sbjct: 393 EATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFL 452

Query: 80  SIQHKDVYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTL 124
            +  K++  +N +I G +  HG   EA++LF  M      PD+ TL
Sbjct: 453 EMPGKNLVSWNVII-GALALHGCGLEAIKLFEEMQADGTLPDEITL 497


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 168/472 (35%), Positives = 273/472 (57%), Gaps = 5/472 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           ++ H   L LG  S  FVS  LI  YA+CGQ   +Q +F+ +  +D+  +N+LI GY + 
Sbjct: 136 RKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQY 195

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
           + + E L LF  M  +N+  D  T+  I      + D      +     +    +DV L 
Sbjct: 196 NKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLG 255

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+L+ MY +         +FD M +RN+ SWN  + GHA  G+ +    +R++FD M +R
Sbjct: 256 NTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLT---AARKLFDNMPKR 312

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           +V +WT+MI GY Q     +A+ LF EM +  +++P+KV++ SVL  C+ L  L  G  +
Sbjct: 313 DVISWTSMITGYSQASQFSDAVKLFQEM-MAAKVKPDKVTVASVLSACAHLGKLDVGWAV 371

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H +  R  +  D+ + N+LIDMY KCG ++ A  VF     +KD+++W+S++SG  ++G 
Sbjct: 372 HHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMK-DKDSVSWTSVISGLAVNGF 430

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
            + A+ L+++M+  G +P   T VG+L AC  +GL+N+GLE + S+ + + + P  +   
Sbjct: 431 ANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYG 490

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           CVVD+L R+G +D+A +FIK MP+ P   +W  L+SA  +HGN  + ++A K L++L+P 
Sbjct: 491 CVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPC 550

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
           +  NYV LSN YA   RWD   ++R +M+D  ++K  G S I + G    +S
Sbjct: 551 DSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNYS 602



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 218/422 (51%), Gaps = 22/422 (5%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT-QSQLVFNSIQHKDV 86
           +VS    S   +K+ H+ ++     ++PF+ + +I +Y+L      ++ LVFN I+   +
Sbjct: 22  RVSKNSISTDTSKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTL 81

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
            ++N +I G  ++    EA+ +++ M++  ++ ++ TL  + K    + D+  G  IH  
Sbjct: 82  VVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVH 141

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           ++K+GF   + ++N+L+ MY  CG+      +FD M  R++ SWN  I G++    +  V
Sbjct: 142 ALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEV 201

Query: 207 VRSRRVFDQMKRRNVYA----WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
           +   R+FD M   N+ A       +I      GD +     F +  +K  I+ N + +  
Sbjct: 202 L---RLFDAMTAANIKADAVTMVKIILACSHLGDWE-----FADSMVK-YIKENNLEIDV 252

Query: 263 VLPTCSSLIGLSGGKQIHGFA---IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            L   ++LI + G + +   A     +    ++   NAL+  ++K G+L  AR++F D+ 
Sbjct: 253 YLG--NTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLF-DNM 309

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D I+W+S+++GY    +  +AV L+ +M+    KPD +T+  VLSAC   G ++ G 
Sbjct: 310 PKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGW 369

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            +++  I  + ++    +   ++DM  + G +++AL+    M  + S S W +++S   +
Sbjct: 370 AVHH-YIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVS-WTSVISGLAV 427

Query: 440 HG 441
           +G
Sbjct: 428 NG 429



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 99/253 (39%), Gaps = 20/253 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A    L +    H  I   G  ++ +V   LI  Y  CG   ++  VF+ +
Sbjct: 351 TVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRM 410

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KD   + S+I+G   N   N AL+LFS M    V P   T   I         +N G+
Sbjct: 411 KDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGL 470

Query: 142 L-------IHGLSIKI---GFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSW 190
                   +HGL   +   G VVD++          + G   +      +MP   +V  W
Sbjct: 471 EYFESMESVHGLVPAMKHYGCVVDLL---------SRSGNIDKAYEFIKKMPIVPDVVVW 521

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
            + +S     G+  L   + +   ++   +   +  + N Y      D+A+ +   M+  
Sbjct: 522 RILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDS 581

Query: 251 DRIEPNKVSLVSV 263
           D  +P+  S + V
Sbjct: 582 DVQKPSGSSSIEV 594


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 181/567 (31%), Positives = 284/567 (50%), Gaps = 70/567 (12%)

Query: 42   SHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101
            +H  I+ LG  +   V   LI+ YA       + LVFN +  +D   +NS+I+G   N  
Sbjct: 439  AHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGL 498

Query: 102  HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
            ++EA+ELF  M+      D  TL ++     + +    G ++HG S+K G + +  LAN+
Sbjct: 499  NSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANA 558

Query: 162  LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG------------------------- 196
            L+ MY  C  +     +F  M Q+NV SW   I+                          
Sbjct: 559  LLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPD 618

Query: 197  --------HASSGDFSL----------------------------------VVRSRRVFD 214
                    HA +GD SL                                  V  +R +FD
Sbjct: 619  VFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFD 678

Query: 215  QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            ++  ++V +W  +I GY +N   +E+  LF +M L+ R  PN V++  +LP  +S+  L 
Sbjct: 679  RVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQFR--PNAVTMTCILPAAASISSLE 736

Query: 275  GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
             G++IH +A+R+    D    NAL+DMY KCG+L  AR +F D    K+ I+W+ +++GY
Sbjct: 737  RGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLF-DRLTKKNLISWTIMIAGY 795

Query: 335  GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            G+HG G  A+ L+ +M   G +PD  +   +L AC  SGL  EG   + ++   Y+I+P 
Sbjct: 796  GMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPK 855

Query: 395  TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
             +   C+VD+L R G L  AL+FI++MP+EP  SIW +L+    +H N ++ +     + 
Sbjct: 856  LKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVF 915

Query: 455  QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
            +LEPEN   YV L+N+YA + RW+AV +L+  +  RGL+++ G SWI +  K H F   +
Sbjct: 916  KLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADN 975

Query: 515  KAHPCSVSIYEMLDDLILIMRGAAASP 541
            + HP    I E LDD+   MR     P
Sbjct: 976  RNHPDWNRIAEFLDDVARRMRQEGHDP 1002



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 216/476 (45%), Gaps = 66/476 (13%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISN----PFVSTKLITAYALCGQPTQSQLVFNSI- 81
           +Q+    RSL+  K++H+ I +    +       +  +L+ AY  CG   +++ VF+ + 
Sbjct: 104 VQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMP 163

Query: 82  -QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
            Q  DV ++ SL++ Y K     EA+ LF  M    VSPD   ++ + K    +  L  G
Sbjct: 164 PQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEG 223

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
            +IHGL  K+G      +AN+L+++Y +CG+  +                          
Sbjct: 224 EVIHGLLEKLGLGQACAVANALIAVYSRCGRMED-------------------------- 257

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                   + RVFD M  R+  +W +MI G   NG    A+ LF +M  +   E + V++
Sbjct: 258 --------AARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQG-TEISSVTV 308

Query: 261 VSVLPTCSSL-IGLSGGKQIHGFAIRKEL----------NHDVSLCNALIDMYSKCGSLD 309
           +SVLP C+ L  GL G K +HG++++  L            D +L + L+ MY KCG + 
Sbjct: 309 LSVLPACAGLGYGLIG-KAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMA 367

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS-- 367
            ARRVF+  S   +   W+ I+ GY   G+  E++ L+ +M  LG  PD   I  +L   
Sbjct: 368 SARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCI 427

Query: 368 ---ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
              +C R GL+  G       I          +C  ++    ++  +  A+     MP +
Sbjct: 428 TCLSCARDGLVAHGY------IVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQ 481

Query: 425 PSPSIWGALVSASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            + S W +++S    +G NSE  +L  +   Q +  +    +S+    A SR W A
Sbjct: 482 DTIS-WNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFA 536



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 162/336 (48%), Gaps = 37/336 (11%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKNHGHNEALELFS 110
           I +  + +KL+  Y  CG    ++ VF+++  K +V+++N ++ GY K     E+L LF 
Sbjct: 347 IDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFV 406

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M+   ++PD+  ++ + K    +     G++ HG  +K+GF     + N+L+S Y K  
Sbjct: 407 QMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSN 466

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
              + + +F+ MP+++  SWN  ISG +S                               
Sbjct: 467 MIGDAVLVFNRMPRQDTISWNSVISGCSS------------------------------- 495

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
              NG   EA+ LF+ M  + + E + V+L+SVLP C+       G+ +HG++++  L  
Sbjct: 496 ---NGLNSEAIELFIRMWTQGQ-ELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIG 551

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           + SL NAL+DMYS C       ++F  S   K+ ++W+++++ Y   G   +   L  +M
Sbjct: 552 ETSLANALLDMYSNCSDWQSTNQIFR-SMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEM 610

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           V  G +PD+  +   L A      + +G  ++   I
Sbjct: 611 VLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTI 646



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 182/410 (44%), Gaps = 49/410 (11%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H  +  LG      V+  LI  Y+ CG+   +  VF+S+  +D   +NS+I G   N  H
Sbjct: 227 HGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWH 286

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF---------- 152
             A++LFS M+         T+ ++      +    +G  +HG S+K G           
Sbjct: 287 GTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSG 346

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
           + D  L + L+ MYVKCG  +                                   +RRV
Sbjct: 347 IDDAALGSKLVFMYVKCGDMAS----------------------------------ARRV 372

Query: 213 FDQMKRR-NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           FD M  + NV+ W  ++ GY + G+ +E+L LF++M  +  I P++ ++  +L   + L 
Sbjct: 373 FDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMH-ELGIAPDEHAISCLLKCITCLS 431

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
               G   HG+ ++       ++CNALI  Y+K   +  A  VF      +D I+W+S++
Sbjct: 432 CARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP-RQDTISWNSVI 490

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           SG   +G   EA+ L+ +M   G + D +T++ VL AC +S     G  ++   + T  I
Sbjct: 491 SGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLI 550

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             T+ +   ++DM              ++M  +   S W A++++ +  G
Sbjct: 551 GETS-LANALLDMYSNCSDWQSTNQIFRSMGQKNVVS-WTAMITSYMRAG 598



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 138/318 (43%), Gaps = 39/318 (12%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
            V   L   A   SLK  K  H   +  G      V+  L+  Y  C    +++L+F+ +
Sbjct: 621 AVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRV 680

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            +KDV  +N+LI GY +N+  NE+  LFS+M      P+  T+  I   +  I  L  G 
Sbjct: 681 TNKDVISWNTLIGGYSRNNFPNESFSLFSDMLL-QFRPNAVTMTCILPAAASISSLERGR 739

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH  +++ GF+ D   +N+L+ MYVKCG       LFD + ++N+ SW           
Sbjct: 740 EIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISW----------- 788

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  T MI GY  +G    A+ LF +M+    IEP+  S  
Sbjct: 789 -----------------------TIMIAGYGMHGFGKHAIALFEQMR-GSGIEPDAASFS 824

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL--CNALIDMYSKCGSLDCARRVFEDSS 319
           ++L  C    GL+   +    A++KE   +  L     ++D+ S+ G L  A    E   
Sbjct: 825 AILYACCH-SGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMP 883

Query: 320 FNKDAITWSSIVSGYGLH 337
              D+  W S++ G  +H
Sbjct: 884 IEPDSSIWVSLLHGCRIH 901



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 53/108 (49%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L  +A+  SL+  ++ H+  L  G + + + S  L+  Y  CG    ++++F+
Sbjct: 719 AVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFD 778

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            +  K++  +  +I GY  +     A+ LF  M  S + PD  + + I
Sbjct: 779 RLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAI 826


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 185/573 (32%), Positives = 302/573 (52%), Gaps = 72/573 (12%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
           A+++  +YT+  V   LQV      L L ++ H+ +L  G   N      L+  Y  CG+
Sbjct: 260 AVLSMNSYTTVGV---LQVCTELAQLNLGRELHAALLKSGSEVN-IQCNALLVMYTKCGR 315

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
              +  VF  I  KD   +NS+++ YV+N  + EA+E  S M      PD   + ++S  
Sbjct: 316 VDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSA 375

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM------------------------- 165
            G +  L  G  +H  +IK     D  + N+LM M                         
Sbjct: 376 VGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISW 435

Query: 166 ------YVKCGKFSECLNLFDEMPQRNV-------GSWNVRISGHAS------------- 199
                 Y +  +  E L +F E  +  +       GS     SG  +             
Sbjct: 436 TTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIR 495

Query: 200 SGDFSLVVRSR---------------RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           +G   LVV++R               ++F+ ++++++  WT+MIN Y  +G L+EALVLF
Sbjct: 496 NGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLF 555

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
            EMQ  D ++P+ V+LVS+L     L  L+ GK++HGF IR+  + + ++ ++L+DMYS 
Sbjct: 556 AEMQSTD-VQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSG 614

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           CGSL  A +VF ++   KD + W+++++  G+HG G +A+ L+ +M+  G  PD ++ + 
Sbjct: 615 CGSLSGALKVF-NAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLA 673

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
           +L AC  S L+NEG    + +++TYR++P  E  ACVVD+LGR+GQ + A +FIK+MP++
Sbjct: 674 LLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLK 733

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484
           P   +W +L+ A  +H N E+  +A   L++LEP+NP NYV +SN++A   +W+   E+R
Sbjct: 734 PKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVR 793

Query: 485 TMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
             + +RGL+K P CSWI I    H F+  D +H
Sbjct: 794 ARISERGLRKDPACSWIEIGNNVHTFTTRDNSH 826



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 218/439 (49%), Gaps = 49/439 (11%)

Query: 7   RNTFALVTSRNY-TSATVQHF---LQVSATHRSLKLTKQSHSQILSLGHIS--NPFVSTK 60
           R    L+TS+    S   +H+   L + A  +++    Q H+  ++ G +   + F++TK
Sbjct: 41  RQALRLLTSQTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATK 100

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS---NV 117
           L+  Y  CG+   ++L+F+ +  + V+ +N+LI  Y+ +    EAL ++  M  S    V
Sbjct: 101 LLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGV 160

Query: 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
           +PD  TLA++ K SG   D   G  +HGL++K G      +AN+L++MY KCG     + 
Sbjct: 161 APDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMR 220

Query: 178 LFDEMPQ-RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
           +F+ M   R+V SWN                                  +MI+G +QNG 
Sbjct: 221 VFELMHDGRDVASWN----------------------------------SMISGCLQNGM 246

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
             +AL LF  MQ +  +  N  + V VL  C+ L  L+ G+++H   ++     ++  CN
Sbjct: 247 FLQALDLFRGMQ-RAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQ-CN 304

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           AL+ MY+KCG +D A RVF +    KD I+W+S++S Y  +G   EA+   ++M+  G +
Sbjct: 305 ALLVMYTKCGRVDSALRVFREID-EKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQ 363

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD   IV + SA G  G +  G E++   I   R+   T++   ++DM  +   ++ +  
Sbjct: 364 PDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQ-RLDSDTQVGNTLMDMYMKCRYIEYSAH 422

Query: 417 FIKTMPVEPSPSIWGALVS 435
               M ++   S W  +++
Sbjct: 423 VFDRMRIKDHIS-WTTIIT 440



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 149/331 (45%), Gaps = 47/331 (14%)

Query: 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV--DVILANSLMSMYVKCGKFSEC 175
           SP       +  L    K +  G+ +H  ++  G +   D  LA  L+ MY KCG+    
Sbjct: 55  SPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGR---- 110

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
                                         V  +R +FD M  R V++W A+I  Y+ +G
Sbjct: 111 ------------------------------VADARLLFDGMSSRTVFSWNALIGAYLSSG 140

Query: 236 DLDEALVLFLEMQLK--DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
              EAL ++  M+L     + P+  +L SVL           G ++HG A++  L+    
Sbjct: 141 SACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTF 200

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           + NALI MY+KCG LD A RVFE     +D  +W+S++SG   +G   +A+ L+  M   
Sbjct: 201 VANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRA 260

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI---CACVVDMLGRAGQ 410
               +  T VGVL  C     +N G E++ ++     +K  +E+   C  ++ M  + G+
Sbjct: 261 VLSMNSYTTVGVLQVCTELAQLNLGRELHAAL-----LKSGSEVNIQCNALLVMYTKCGR 315

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +D AL   + +  +   S W +++S  V +G
Sbjct: 316 VDSALRVFREIDEKDYIS-WNSMLSCYVQNG 345



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 9/214 (4%)

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE--LNH 290
           + G+L +AL L L  Q   R  P +     VL   ++   ++ G Q+H  A+        
Sbjct: 36  KEGNLRQALRL-LTSQTPGRSPPQE-HYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGD 93

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           D  L   L+ MY KCG +  AR +F+  S ++   +W++++  Y   G   EA+ +Y  M
Sbjct: 94  DGFLATKLLFMYGKCGRVADARLLFDGMS-SRTVFSWNALIGAYLSSGSACEALGVYRAM 152

Query: 351 ---VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
                 G  PD  T+  VL A G  G    G E++   +  + +  +T +   ++ M  +
Sbjct: 153 RLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVK-HGLDRSTFVANALIAMYAK 211

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
            G LD A+   + M      + W +++S  + +G
Sbjct: 212 CGILDSAMRVFELMHDGRDVASWNSMISGCLQNG 245


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 185/543 (34%), Positives = 289/543 (53%), Gaps = 67/543 (12%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+    +  A+  ++ + KQ HS ++  G  S+ F    LI  YA       ++L+F+ I
Sbjct: 98  TIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGI 157

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNM--------------YYSN----------- 116
             KD   YN LI+ Y ++     A ELF  M              Y  N           
Sbjct: 158 LVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQ 217

Query: 117 ------VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
                   P++ TLAT+  +  ++ DL +G+ I  L+       ++I++ +++ MYVKCG
Sbjct: 218 RMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCG 277

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
              +                                   R VFD M RR+V  W+AMI G
Sbjct: 278 AVDD----------------------------------GRLVFDHMARRDVVTWSAMIAG 303

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           Y QNG  +EAL LF  M+   +I+PN V+LVSVL  C+ L  +  G++I  +   + L  
Sbjct: 304 YAQNGRSNEALELFENMK-SAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLIS 362

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           +V + +AL+ MYSKCG++  AR++F D    +D +TW+S++ G  ++G   +A+ LYN+M
Sbjct: 363 NVYVASALLGMYSKCGNIIKARQIF-DKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRM 421

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
             +  KP+ IT VG+++AC  +G +  GLE + S+ + + I P  E  AC+VD+  R+G+
Sbjct: 422 KEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGR 481

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           L  A +FI  M VEP+  IWG L+SAS +H N E+ +LA K L++LEP+N  NYV LSN+
Sbjct: 482 LIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNI 541

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YAS+ RW    ++R +MKD+ ++K+   SW+ +  + H F V D +HP S  +Y  +D L
Sbjct: 542 YASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRVHKFLVGDTSHPRSDEVYSTIDGL 601

Query: 531 ILI 533
            L+
Sbjct: 602 ALL 604



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 210/389 (53%), Gaps = 9/389 (2%)

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           ++ VF+ I H D  ++ S I  Y +   +NEAL  F +M+ +NV    FT+  I K    
Sbjct: 49  ARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCAS 108

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           +  ++VG  +H L I+ GF   V   N+L++ Y K         +FD +  ++  ++N  
Sbjct: 109 LLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCL 168

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           IS ++ SG+   V+ +R +FD+M+ R++ +W AMI+ Y QNGD  +  ++F  MQ  +  
Sbjct: 169 ISAYSRSGE---VLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQ-DEMC 224

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           EPN+++L +VL  C+ L  L  G +I      K L  ++ +  A+++MY KCG++D  R 
Sbjct: 225 EPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRL 284

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VF D    +D +TWS++++GY  +G+ +EA+ L+  M     KP+ +T+V VLSAC + G
Sbjct: 285 VF-DHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLG 343

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            +  G  I  S + +  +     + + ++ M  + G + +A      +P   + + W ++
Sbjct: 344 SVETGERI-GSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVT-WNSM 401

Query: 434 VSASVMHGNSEMQDLAYKSL--IQLEPEN 460
           +    ++G +E     Y  +  I+++P N
Sbjct: 402 IMGLAINGFAEDAIALYNRMKEIEVKPNN 430



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 116/270 (42%), Gaps = 33/270 (12%)

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
           S +  +R+VFDQ+   +     + I  Y +    +EAL  F+ M  ++ +     ++  +
Sbjct: 44  SFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMH-QNNVRIVCFTIPPI 102

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------- 316
             +C+SL+ +  GKQ+H   IR   +  V   NALI+ Y+K   L  A  +F+       
Sbjct: 103 FKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDT 162

Query: 317 -----------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
                                  D   ++  ++W++++S Y  +G  H+  +++ +M   
Sbjct: 163 IAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDE 222

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
             +P+ IT+  VLS C + G +  GL I   + +   +     +   +++M  + G +D 
Sbjct: 223 MCEPNEITLATVLSICAKLGDLEMGLRI-KKLNDNKNLGSNMIVSTAMLEMYVKCGAVDD 281

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
                  M      + W A+++    +G S
Sbjct: 282 GRLVFDHMARRDVVT-WSAMIAGYAQNGRS 310


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 173/515 (33%), Positives = 290/515 (56%), Gaps = 11/515 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS--QLVFNSIQHKDVYLYNSL 92
           +L   KQ H  +L  G   + ++ TKLI      G P     + V   +Q ++ +L+ ++
Sbjct: 62  NLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAV 121

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           I GY      +EA+ ++  M    ++P  FT + + K  G + DLN+G   H  + ++  
Sbjct: 122 IRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRG 181

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
              V + N+++ MYVKCG       +FDEMP+R+V SW   I+ +A  G+      +  +
Sbjct: 182 FCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNME---SAADL 238

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
           F+ +  +++ AWTAM+ G+ QN    EAL  F  M+ K  I  ++V++   +  C+ L  
Sbjct: 239 FESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRME-KSGIRADEVTVAGYISACAQLGA 297

Query: 273 LSGGKQIHGFAIRKELN--HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
                +    A +   +    V + +ALIDMYSKCG+++ A  VF  S  NK+  ++SS+
Sbjct: 298 SKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFV-SMNNKNVFSYSSM 356

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           + G   HG+  EA+ L++ MV   + KP+ +T VG L+AC  SGL+++G +++ S+  T+
Sbjct: 357 ILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTF 416

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            ++PT +   C+VD+LGRAG+L  AL+ IKTM VEP   +WGAL+ A  +H N ++ ++A
Sbjct: 417 GVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIA 476

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW-ISIHGKTH 508
            + L +LEP+   NY+ LSN+Y+S+  W  V  +R ++K++GLKK+P  SW +  +G+ H
Sbjct: 477 AEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMH 536

Query: 509 CFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            F   +  HP S  I + L++L+  +      P L
Sbjct: 537 KFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDL 571



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 144/379 (37%), Gaps = 78/379 (20%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLG-----HISNPFVS---------------- 58
           S T    L+   +   L L +Q H+Q   L      ++ N  +                 
Sbjct: 150 SFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFD 209

Query: 59  ----------TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALEL 108
                     T+LI AYA  G    +  +F S+  KD+  + +++ G+ +N    EALE 
Sbjct: 210 EMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEY 269

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD--VILANSLMSMY 166
           F  M  S +  D+ T+A       ++           ++ K G+     V++ ++L+ MY
Sbjct: 270 FDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMY 329

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
            KCG   E +N+F  M  +N                                  V+++++
Sbjct: 330 SKCGNVEEAVNVFVSMNNKN----------------------------------VFSYSS 355

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG----- 281
           MI G   +G   EAL LF  M  +  I+PN V+ V  L  CS    +  G+Q+       
Sbjct: 356 MILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQT 415

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           F +    +H       ++D+  + G L  A  + +  S       W +++    +H    
Sbjct: 416 FGVEPTRDH----YTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPD 471

Query: 342 EAVLLYNKMVCLGSKPDII 360
            A +    +  L  +PDII
Sbjct: 472 IAEIAAEHLFEL--EPDII 488



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 12/199 (6%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG-SLD-CARRVFE 316
           SL+S L  C   I L+  KQIHG  +RK L+    +   LI   +K G  +D   RRV E
Sbjct: 52  SLISKLDDC---INLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIE 108

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
              F ++   W++++ GY + GK  EA+ +Y  M      P   T   +L ACG  G +N
Sbjct: 109 PVQF-RNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLN 167

Query: 377 EGLEIYNSVINTYRIKP--TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
            G + +     T+R++      +   ++DM  + G +  A      MP E     W  L+
Sbjct: 168 LGRQFH---AQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMP-ERDVISWTELI 223

Query: 435 SASVMHGNSEMQDLAYKSL 453
           +A    GN E     ++SL
Sbjct: 224 AAYARVGNMESAADLFESL 242


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 181/520 (34%), Positives = 277/520 (53%), Gaps = 36/520 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  + L    +  +L+  KQ H+ I+   + S+  VST L   Y  CG    ++ VF  +
Sbjct: 232 TYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECL 291

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            ++DV  +N++I G+V +    EA   F  M    V+PD  T  T+         L  G 
Sbjct: 292 SYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGK 351

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH  + K G V DV   N+L++MY K G   +                           
Sbjct: 352 EIHARAAKDGLVSDVRFGNALINMYSKAGSMKD--------------------------- 384

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  +R+VFD+M +R+V +WT ++  Y     + E+   F +M L+  ++ NK++ +
Sbjct: 385 -------ARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQM-LQQGVKANKITYM 436

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
            VL  CS+ + L  GK+IH   ++  L  D+++ NAL+ MY KCGS++ A RVFE  S  
Sbjct: 437 CVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSM- 495

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D +TW++++ G G +G+G EA+  Y  M   G +P+  T V VLSAC    L+ EG   
Sbjct: 496 RDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQ 555

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  +   Y I PT +  AC+VD+L RAG L  A D I T+P++PS ++WGAL++A  +H 
Sbjct: 556 FAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHC 615

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ + A +  ++LEP+N   YVSLS +YA++  W  VA+LR  MK+RG+KK PG SWI
Sbjct: 616 NVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWI 675

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            I G+ H F   D++HP +  IY  L+ L   M+     P
Sbjct: 676 EIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVP 715



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 185/397 (46%), Gaps = 37/397 (9%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            LQ     + L + KQ H  IL  G   N +++  L+  YA CG   +++ +F+   +K 
Sbjct: 34  LLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKS 93

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           V  +N +I+GY       EA  LF+ M    + PD FT  +I         LN G  IH 
Sbjct: 94  VVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHV 153

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             ++ G   D  + N+L+SMY KCG   +                               
Sbjct: 154 RVMEAGLANDTTVGNALISMYAKCGSVRD------------------------------- 182

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
              +RRVFD M  R+  +WT +   Y ++G  +E+L  +  M L++R+ P++++ ++VL 
Sbjct: 183 ---ARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAM-LQERVRPSRITYMNVLS 238

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C SL  L  GKQIH   +  E + DV +  AL  MY KCG+   AR VFE  S+ +D I
Sbjct: 239 ACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSY-RDVI 297

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
            W++++ G+   G+  EA   +++M+  G  PD  T   VLSAC R G +  G EI+   
Sbjct: 298 AWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARA 357

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
                +         +++M  +AG +  A      MP
Sbjct: 358 AKDGLVS-DVRFGNALINMYSKAGSMKDARQVFDRMP 393



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 4/212 (1%)

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           V +L +C     L+ GKQ+H   +R  +  +V + N L+ +Y+ CGS++ AR++F+  S 
Sbjct: 32  VKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFS- 90

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           NK  ++W+ ++SGY   G   EA  L+  M     +PD  T V +LSAC    ++N G E
Sbjct: 91  NKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE 150

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           I+  V+       TT +   ++ M  + G +  A      M      S W  L  A    
Sbjct: 151 IHVRVMEAGLANDTT-VGNALISMYAKCGSVRDARRVFDAMASRDEVS-WTTLTGAYAES 208

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
           G  E     Y +++Q E   PS    ++ L A
Sbjct: 209 GYGEESLKTYHAMLQ-ERVRPSRITYMNVLSA 239



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 124/323 (38%), Gaps = 46/323 (14%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT    L   A    L   K+ H++    G +S+      LI  Y+  G    ++ VF+ 
Sbjct: 332 ATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDR 391

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +  +DV  + +L+  Y       E+   F  M    V  +  T   + K       L  G
Sbjct: 392 MPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWG 451

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             IH   +K G + D+ + N+LMSMY KCG   + + +F+ M  R+V +WN         
Sbjct: 452 KEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNT-------- 503

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                     +I G  QNG   EAL  + E+   + + PN  + 
Sbjct: 504 --------------------------LIGGLGQNGRGLEALQRY-EVMKSEGMRPNAATF 536

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC------NALIDMYSKCGSLDCARRV 314
           V+VL  C     +  G++   F     ++ D  +         ++D+ ++ G L  A  V
Sbjct: 537 VNVLSACRVCNLVEEGRRQFAF-----MSKDYGIVPTEKHYACMVDILARAGHLREAEDV 591

Query: 315 FEDSSFNKDAITWSSIVSGYGLH 337
                    A  W ++++   +H
Sbjct: 592 ILTIPLKPSAAMWGALLAACRIH 614


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 164/493 (33%), Positives = 277/493 (56%), Gaps = 8/493 (1%)

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           H+ N +    +++ +   G   ++++VF+S+  +DV  +N+++ GY ++   +EAL  F 
Sbjct: 109 HLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFK 168

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            +  S +  ++F+ A +     + + L +    HG  +  GF+ +V+L+ S++  Y KCG
Sbjct: 169 ELRRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCG 228

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
           +       FDEM  +++  W   ISG+A  GD      + ++F +M  +N  +WTA+I G
Sbjct: 229 QMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEA---ADKLFREMPEKNPVSWTALIAG 285

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           YV+ G  D AL LF +M +  R++P + +  S L   +S+  L  GKQIHG+ IR  +  
Sbjct: 286 YVRQGSGDLALDLFRKM-IAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRP 344

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           +  + ++LIDMYSK GSL+ + RVF      +D + W++++S    HG GH+A+ + + M
Sbjct: 345 NAIVTSSLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDM 404

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
           +     P+  T+V +L+AC  SGL+ EG+  + S+   + I P  E  AC++D+LGRAG 
Sbjct: 405 IKFRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGC 464

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
               +  I+ MP EP   IW A++    +HGN E+   A + LI+L+PE+ + Y+ LS++
Sbjct: 465 FKELMSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSI 524

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD----KAHPCSVSIYEM 526
           YA   +W+ V +LR +MK R + K    SWI I  K   F+V+D     AH     IY +
Sbjct: 525 YADHGKWELVEKLRGIMKKRRVNKEKAVSWIEIENKVKAFTVSDGSHAHAHARKEEIYFI 584

Query: 527 LDDLILIMRGAAA 539
           L +L  +M   A+
Sbjct: 585 LHNLAALMEEEAS 597



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 182/370 (49%), Gaps = 43/370 (11%)

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSECLN 177
           P D  LA++ +  G+ K L  G  IH      GF   + +L+N L+ MY+KCGK  +   
Sbjct: 45  PFDL-LASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACK 103

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           +FD+M  RN+ SWN  +SG   SG   ++VR+R VFD M  R+V +W  M+ GY Q+G+L
Sbjct: 104 VFDQMHLRNLYSWNNMVSGFVKSG---MLVRARVVFDSMPERDVVSWNTMVIGYAQDGNL 160

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
            EAL  F E++ +  I+ N+ S   +L  C     L   +Q HG  +      +V L  +
Sbjct: 161 HEALWFFKELR-RSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCS 219

Query: 298 LIDMYSKCGSLDCARRVFEDSSF------------------------------NKDAITW 327
           +ID Y+KCG ++ A+R F++ +                                K+ ++W
Sbjct: 220 IIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSW 279

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +++++GY   G G  A+ L+ KM+ +  KP+  T    L A      +  G +I+  +I 
Sbjct: 280 TALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIR 339

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
           T  ++P   + + ++DM  ++G L+ +    +    +    +W  ++SA   HG      
Sbjct: 340 T-NVRPNAIVTSSLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMISALAQHG------ 392

Query: 448 LAYKSLIQLE 457
           L +K+L  L+
Sbjct: 393 LGHKALQMLD 402



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 140/345 (40%), Gaps = 66/345 (19%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            L      R L+L +Q+H Q+L  G +SN  +S  +I AYA CGQ   ++  F+ +  KD
Sbjct: 185 LLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKD 244

Query: 86  VYLYNSLINGYVK------------------------------NHGHNE-ALELFSNMYY 114
           ++++ +LI+GY K                                G  + AL+LF  M  
Sbjct: 245 IHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIA 304

Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
             V P+ FT ++    S  I  L  G  IHG  I+     + I+ +SL+ MY K G    
Sbjct: 305 MRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEA 364

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
              +F                              R  +D   +++   W  MI+   Q+
Sbjct: 365 SERVF------------------------------RICYD---KQDCVLWNTMISALAQH 391

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS-SLIGLSGGKQIHGFAIRKELNHDVS 293
           G   +AL +  +M +K R+ PN+ +LV +L  CS S +   G +      ++  +  D  
Sbjct: 392 GLGHKALQMLDDM-IKFRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQE 450

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
               LID+  + G         E+  F  D   W++I+    +HG
Sbjct: 451 HYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVCRIHG 495


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  317 bits (812), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 177/514 (34%), Positives = 278/514 (54%), Gaps = 38/514 (7%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           +  +++  ++ H+ ++   +    ++ T+LI  Y  C     ++ V + +  ++V  + +
Sbjct: 489 SQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTA 548

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I+GY +    +EAL LF  M  S  +P++FT AT+           +G  IH L IK  
Sbjct: 549 MISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTS 608

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F   + + +SL+ MY K GK  E                                  +RR
Sbjct: 609 FESHIFVGSSLLDMYAKAGKICE----------------------------------ARR 634

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VFD +  R+V + TA+I+GY Q G  +EAL LF  +Q ++ +  N V+  SVL   S L 
Sbjct: 635 VFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQ-REGMRSNYVTYASVLTALSGLA 693

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  G+Q+H   +R +L   V L N+LIDMYSKCGSL  +RR+F DS   +  I+W++++
Sbjct: 694 ALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIF-DSMPERTVISWNAML 752

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
            GY  HG G EAV L+  M      KPD +T + VLS C   G+ + GLEI+  ++N   
Sbjct: 753 VGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKD 812

Query: 391 -IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
             +P  E   CVVD+ GRAG+++ A +FIK MP EP+ +IWG+L+ A  +H N  + +  
Sbjct: 813 GFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFV 872

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            + L+++E EN  NYV LSNLYAS+ RWD V  +R +MK++ + K PG SWI +    H 
Sbjct: 873 ARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHT 932

Query: 510 FSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           F  +D++HP    ++  + +L + ++ A   P L
Sbjct: 933 FHASDRSHPRKEEVFAKVRELSIKIKEAGYVPEL 966



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 158/348 (45%), Gaps = 51/348 (14%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            +T ATV   L    +    +L +Q HS ++     S+ FV + L+  YA  G+  +++ 
Sbjct: 578 EFTFATV---LTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARR 634

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI-SKLSGEIK 135
           VF+ +  +DV    ++I+GY +     EAL+LF  +    +  +  T A++ + LSG + 
Sbjct: 635 VFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSG-LA 693

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
            L+ G  +H   ++      V+L NSL+ MY KCG  +    +FD MP+R V SWN    
Sbjct: 694 ALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWN---- 749

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                                         AM+ GY ++G   EA+ LF  M+ +++++P
Sbjct: 750 ------------------------------AMLVGYSKHGLGREAVELFKLMKEENKVKP 779

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-------NHDVSLCNALIDMYSKCGSL 308
           + V+ ++VL  CS      GG +  G  I  E+         ++     ++D++ + G +
Sbjct: 780 DSVTFLAVLSGCS-----HGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRV 834

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           + A    +   F   A  W S++    +H   H    +  +++ + S+
Sbjct: 835 EEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESE 882



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 9/237 (3%)

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           N  L EAL   LEM ++  +E       SVL  C S   +  G+++H   I+      V 
Sbjct: 458 NRQLKEAL---LEMGIQG-LEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVY 513

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L   LI +Y+KC  L  ARRV ++    ++ ++W++++SGY   G   EA+ L+ +M+  
Sbjct: 514 LRTRLIVLYNKCRCLGDARRVLDEMP-ERNVVSWTAMISGYSQRGYASEALHLFVEMLMS 572

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G+ P+  T   VL++C  S     G +I++ VI T   +    + + ++DM  +AG++  
Sbjct: 573 GTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKT-SFESHIFVGSSLLDMYAKAGKICE 631

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           A      +P     S    +   + +  + E  DL  +  +Q E    SNYV+ +++
Sbjct: 632 ARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR--LQREGMR-SNYVTYASV 685


>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
 gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
          Length = 492

 Score =  317 bits (812), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 176/517 (34%), Positives = 283/517 (54%), Gaps = 37/517 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T++++   L+    H ++   KQ+H+QIL  G I N  + T L+  Y+ CG    ++ VF
Sbjct: 5   TASSLSCILRKCVPHSAISQAKQTHAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKVF 64

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  ++++ +N LI  Y  N    +AL +F +       PD FTL  + K    I D  
Sbjct: 65  DKMVERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDSY 124

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G ++H   I+IGF   V++ +S++  Y KCG                V +W        
Sbjct: 125 LGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGL--------------VDAW-------- 162

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                       R F  M  R+   W  MI G  +     +AL  F +M L + ++ +  
Sbjct: 163 ------------RCFVNMSWRDSVVWNLMIVGLGKACFFRDALECFRDM-LSEGVKMDSR 209

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFED 317
           ++ S+L  C     L  GK+IHG  ++ ++   +V++ N+LIDMY+KCG L  + +VF  
Sbjct: 210 TVPSILSVCGGEGDLMKGKEIHGQVVKNQIFGCEVAIGNSLIDMYAKCGCLHDSEKVFTT 269

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
            S   + +TW+S++S YG+HGKGHEA+ L+ KM   G +P+ +TI  +L++C  SGLI +
Sbjct: 270 MS-ELNLVTWTSMISCYGVHGKGHEALALFKKMKYCGFQPNCVTITAILASCSHSGLIEQ 328

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G +I+ S+   Y  +P+ E  AC+VD+LGR G L+ A + IK M    + S+WGAL++  
Sbjct: 329 GRKIFYSINLDYGFEPSAEHYACMVDLLGRFGYLEEAFELIKNMKSAATASVWGALLAGC 388

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
           +MH N E+ ++A   L +LEP N SNY++L ++Y S   WD V+  R  M++ GL K+PG
Sbjct: 389 LMHKNIEIGEIAAHCLFELEPRNSSNYIALCSMYDSLGIWDGVSRTRAKMRELGLVKTPG 448

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
           CSWI++ G+ H F   D +HP +  IYE L  ++ I+
Sbjct: 449 CSWITVAGRVHKFYQEDLSHPETQMIYETLHGIVNIL 485


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  317 bits (812), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 188/577 (32%), Positives = 293/577 (50%), Gaps = 68/577 (11%)

Query: 31   ATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYN 90
            A+  +L+  K  H      G IS+  +   LI  YA CG    ++LVF+ +  +DV  +N
Sbjct: 434  ASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWN 493

Query: 91   SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
            +++ G  +N   +EA  +F  M    + PD  T  ++    G    L     +H  +++ 
Sbjct: 494  AMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVET 553

Query: 151  GFVVDVILANSLMSMYVKCGKFS-------------------------------ECLNLF 179
            G + D  + ++ + MY++CG                                  E L+LF
Sbjct: 554  GLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLF 613

Query: 180  DEMPQR----------NVGSWNVRISG-------HASSGDFSLV---------------- 206
             +M +           N+ S NV           H+ + D  LV                
Sbjct: 614  LQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCG 673

Query: 207  --VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
                +++VFD M  RNV  WT MI G  Q+G   +A   FL+M L++ I P+  + VS+L
Sbjct: 674  NVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQM-LREGIVPDATTYVSIL 732

Query: 265  PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
              C+S   L   K++H  A+   L  D+ + NAL+ MY+KCGS+D AR VF+D    +D 
Sbjct: 733  SACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM-VERDV 791

Query: 325  ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
             +W+ ++ G   HG+G EA+  + KM   G KP+  + V VL+AC  +GL++EG   + S
Sbjct: 792  FSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLS 851

Query: 385  VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            +   Y I+PT E   C+VD+LGRAG L+ A  FI  MP+EP  + WGAL+ A V +GN E
Sbjct: 852  MTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLE 911

Query: 445  MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
            M + A K  ++L+P++ S YV LSN+YA++ +W+    +R+MM+ +G++K PG SWI + 
Sbjct: 912  MAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVD 971

Query: 505  GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             + H F V D +HP S  IY  L+DLI  ++     P
Sbjct: 972  NRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVP 1008



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 148/570 (25%), Positives = 253/570 (44%), Gaps = 93/570 (16%)

Query: 5   SARNTFALVTSRNYTSATVQHFLQVSATHRSLK-----LTKQSHSQILSLGHISNPFVST 59
           +A++  A++  R      +  F  V+   R LK     L KQ H  I+  G   N +V+ 
Sbjct: 98  TAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVAN 157

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVS 118
           KL+  Y  CG+   ++ VF+ +  K++Y++ ++I GY + +GH E A+ ++  M      
Sbjct: 158 KLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAE-YGHAEDAMRVYDKMRQECGQ 216

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           P++ T  +I K      +L  G  IH   I+ GF  DV +  +L++MYVKCG   +   +
Sbjct: 217 PNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLI 276

Query: 179 FDEMPQRNVGS------------------------------------------------- 189
           FD+M +RNV S                                                 
Sbjct: 277 FDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGAL 336

Query: 190 -WNVRISGHASSGDFSLVVR-----------------SRRVFDQMKRRNVYAWTAMINGY 231
            W   +  HA +   +L +R                 +R VFD M  R++++WT MI G 
Sbjct: 337 EWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGL 396

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL--PTCSSLIGLSGGKQIHGFAIRKELN 289
            Q+G   EA  LFL+MQ ++   PN  + +S+L     +S   L   K +H  A      
Sbjct: 397 AQHGRGQEAFSLFLQMQ-RNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFI 455

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            D+ + NALI MY+KCGS+D AR VF D   ++D I+W++++ G   +G GHEA  ++ +
Sbjct: 456 SDLRIGNALIHMYAKCGSIDDARLVF-DGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQ 514

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M   G  PD  T + +L+  G +  +    E++   + T  I     + +  + M  R G
Sbjct: 515 MQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISD-FRVGSAFIHMYIRCG 573

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL---IQLEPE----NPS 462
            +D A      + V    + W A++      G +  Q    ++L   +Q++ E    + +
Sbjct: 574 SIDDARLLFDKLSVR-HVTTWNAMI------GGAAQQRCGREALSLFLQMQREGFIPDAT 626

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
            ++++ +        + V E+ +   D GL
Sbjct: 627 TFINILSANVDEEALEWVKEVHSHATDAGL 656



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 12/243 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T  + L  +    +L+  K+ HS     G + +  V   L+  Y+ CG    ++ VF+
Sbjct: 625 ATTFINILSANVDEEALEWVKEVHSHATDAG-LVDLRVGNALVHTYSKCGNVKYAKQVFD 683

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  ++V  +  +I G  ++   ++A   F  M    + PD  T  +I         L  
Sbjct: 684 DMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEW 743

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              +H  ++  G V D+ + N+L+ MY KCG   +  ++FD+M +R+V SW V I G A 
Sbjct: 744 VKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQ 803

Query: 200 SG------DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
            G      DF + ++S        + N Y++ A++      G +DE    FL M     I
Sbjct: 804 HGRGLEALDFFVKMKSEGF-----KPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGI 858

Query: 254 EPN 256
           EP 
Sbjct: 859 EPT 861


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/477 (35%), Positives = 270/477 (56%), Gaps = 9/477 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK- 98
           KQ H+  L  G     F+  KL+    L   P    L F+ I    VYLYN  I  +   
Sbjct: 5   KQIHAYSLRNGLDHTKFLIEKLLQ---LPDLPYACTL-FDQIPKPSVYLYNKFIQTFSSI 60

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
            H H   L L+  M     SP+ ++   +      + ++  G ++H    K GF  D+  
Sbjct: 61  GHPHRCWL-LYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFA 119

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
             +L+ MY K G       LFDEMP R++ +WN  I+G+A SG     +    +F++M  
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALE---LFNKMPV 176

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           RNV +WTA+I+GY QNG   +AL +F+ ++ +   +PN+VS+ SVLP CS L  L  GK+
Sbjct: 177 RNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKR 236

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           I  +A       +  + NA+++++++CG+++ A++VF++    ++  +W++++ G  +HG
Sbjct: 237 IEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHG 296

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           +  +A+ LY++M+    +PD +T VG+L AC   G++ EG +++ S+ + +++ P  E  
Sbjct: 297 RCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHY 356

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C+VD+LGRAG+L  A + I+ MP+ P   IWG L+ A   HGN E+ ++A +SL +LEP
Sbjct: 357 GCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEP 416

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
            NP NYV LSN+YA +  W  VA LR MMK   + K  G S+I +    H F V D+
Sbjct: 417 WNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDR 473



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLI 93
           +L + K+  +   + G   N +VS  ++  +A CG   ++Q VF+ I  K ++  +N++I
Sbjct: 230 ALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMI 289

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL----SIK 149
            G   +    +AL+L+  M    + PDD T   +      +   + GM+  G     S++
Sbjct: 290 MGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLL-----LACTHGGMVAEGRQLFESME 344

Query: 150 IGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMP 183
             F V   L +   L+ +  + G+  E  NL   MP
Sbjct: 345 SKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMP 380


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 180/527 (34%), Positives = 306/527 (58%), Gaps = 16/527 (3%)

Query: 27  LQVSATH----RSLKLTKQSHSQILSLGHISNPFVSTKLI---TAYALCGQPTQSQLVFN 79
           L +  TH     +LK   +  SQ++  G IS+ F +++L+   T     G     Q +F+
Sbjct: 29  LSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQ-IFD 87

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I++ + +++N+++  Y++++   +AL L+  M  +NV PD++T   + +    ++ L  
Sbjct: 88  RIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRLLEF 146

Query: 140 G-MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           G   IH   +K+GF  DV + N+L++MY  CG   +   LFDE P  +  SWN  ++G+ 
Sbjct: 147 GGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYV 206

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
             GD   V+ + ++F++M  +++ +W+A+I+GY QNG  +EALV+F+EM   + +  ++V
Sbjct: 207 KKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN-ANGMRLDEV 265

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI----DMYSKCGSLDCARRV 314
            +VSVL  C+ L  +  GK IHG  IR  +   V+L NALI    DMY KCG ++ A  V
Sbjct: 266 VVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEV 325

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F      K   +W++++ G  ++G    ++ ++++M   G  P+ IT +GVL AC   GL
Sbjct: 326 FNGME-EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGL 384

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++EG   + S+I  + I+P  +   C+VD+LGRAG L+ A   I++MP+ P  + WGAL+
Sbjct: 385 VDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALL 444

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
            A   HG++EM +   + LI+L+P++   +V LSN++AS   W+ V E+R MMK +G+ K
Sbjct: 445 GACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVK 504

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           +PGCS I  +G  H F   DK HP    +  ML+++   ++    +P
Sbjct: 505 TPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAP 551


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/486 (34%), Positives = 277/486 (56%), Gaps = 7/486 (1%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY-SNVSP 119
           +++ Y   G+   +  +F +++ + +  +N++I GY +N   + AL+ FS M   S++ P
Sbjct: 235 MVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEP 294

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D+FT+ ++      ++ L +G  +H   ++ G      + N+L+S Y K G       + 
Sbjct: 295 DEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIM 354

Query: 180 DE--MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           D+  +   NV S+   + G+   GD     ++R VFD M  R+V AWTAMI GY QNG  
Sbjct: 355 DKAVVADLNVISFTALLEGYVKLGD---TKQAREVFDVMNNRDVIAWTAMIVGYEQNGQN 411

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
           DEA+ LF  M ++   EPN  +L +VL  C+SL  L  GKQIH  AIR      VS+ NA
Sbjct: 412 DEAMELFRSM-IRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNA 470

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           +I +Y++ GS+  ARRVF+   + K+ +TW+S++     HG G +A++L+ +M+ +G KP
Sbjct: 471 IITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKP 530

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           D +T +GV SAC  +G I++G   Y  ++N + I P     AC+VD+L RAG L  A +F
Sbjct: 531 DRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEF 590

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
           I+ MPV P   +WG+L++A  +  N+++ +LA + L+ ++P+N   Y +L+N+Y++  RW
Sbjct: 591 IQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRW 650

Query: 478 DAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGA 537
           +  A +  + KD+ +KK  G SW  +  K H F   D  HP   +I +   ++   ++ A
Sbjct: 651 NDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKA 710

Query: 538 AASPHL 543
              P L
Sbjct: 711 GFVPDL 716



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 206/435 (47%), Gaps = 36/435 (8%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    L++ YA  G+   +++VF  +  +D   +  ++ G  +     +A++ F +M 
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
              ++P  F L  +       +   +G  +H   IK+G    V +ANS++ MY KCG   
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAE 215

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
               +F+ M  R+  SWN  +S +   G   L +    +F+ M+ R++ +W A+I GY Q
Sbjct: 216 TARAVFERMKVRSESSWNAMVSLYTHQGRMDLAL---SMFENMEERSIVSWNAIIAGYNQ 272

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           NG  D AL  F  M     +EP++ ++ SVL  C++L  L  GKQ+H + +R  + +   
Sbjct: 273 NGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQ 332

Query: 294 LCNALIDMYSKCGSLDCARRVFEDS--------SF------------------------N 321
           + NALI  Y+K GS++ ARR+ + +        SF                        N
Sbjct: 333 IMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNN 392

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D I W++++ GY  +G+  EA+ L+  M+  G +P+  T+  VLSAC     +  G +I
Sbjct: 393 RDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQI 452

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +   I + + + +  +   ++ +  R+G +  A      +        W +++ A   HG
Sbjct: 453 HCRAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHG 511

Query: 442 NSEMQDLAYKSLIQL 456
             E   + ++ ++++
Sbjct: 512 LGEQAIVLFEEMLRV 526



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 165/393 (41%), Gaps = 84/393 (21%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLG-----HISNPFVS------------------ 58
           TV   L   A  R LK+ KQ HS IL  G      I N  +S                  
Sbjct: 298 TVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKA 357

Query: 59  ----------TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALEL 108
                     T L+  Y   G   Q++ VF+ + ++DV  + ++I GY +N  ++EA+EL
Sbjct: 358 VVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMEL 417

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           F +M  S   P+  TLA +      +  L  G  IH  +I+      V ++N+++++Y +
Sbjct: 418 FRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYAR 477

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM-KRRNVYAWTAM 227
            G                                   V  +RRVFDQ+  R+    WT+M
Sbjct: 478 SGS----------------------------------VPLARRVFDQICWRKETVTWTSM 503

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGF 282
           I    Q+G  ++A+VLF EM L+  ++P++V+ + V   C+    +  GK+     ++  
Sbjct: 504 IVALAQHGLGEQAIVLFEEM-LRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEH 562

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            I  E++H       ++D+ ++ G L  A    +      D + W S+++   +      
Sbjct: 563 GIVPEMSHYA----CMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADL 618

Query: 343 AVLLYNKMVCLGSKPD----IITIVGVLSACGR 371
           A L   K++ +   PD       +  V SACGR
Sbjct: 619 AELAAEKLLSI--DPDNSGAYSALANVYSACGR 649



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 154/356 (43%), Gaps = 98/356 (27%)

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK----FSECLNLF 179
            A + +LS    + + G  IH  ++K G +V   L N+L+S Y + G     F E   LF
Sbjct: 28  FARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLF 87

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D++P                                  RRN + W ++++ Y ++G L +
Sbjct: 88  DDIP--------------------------------YARRNAFTWNSLLSMYAKSGRLAD 115

Query: 240 ALVLFLEMQLKDRIE------------------------------PNKVSLVSVLPTCSS 269
           A V+F +M  +D +                               P++  L +VL +C++
Sbjct: 116 ARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAA 175

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------DSSFN-- 321
                 G+++H F I+  L+  V + N+++ MY KCG  + AR VFE      +SS+N  
Sbjct: 176 TEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAM 235

Query: 322 ----------------------KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPD 358
                                 +  ++W++I++GY  +G    A+  +++M+   S +PD
Sbjct: 236 VSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPD 295

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
             T+  VLSAC    ++  G ++++ ++ T  +  +++I   ++    ++G ++ A
Sbjct: 296 EFTVTSVLSACANLRMLKMGKQMHSYILRT-GMPYSSQIMNALISTYAKSGSVETA 350



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 38/222 (17%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC----GSLDCARRVF 315
              +L    + +  S G+ IH  A++  L     LCN L+  Y++     G    ARR+F
Sbjct: 28  FARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLF 87

Query: 316 EDSSF--------------------------------NKDAITWSSIVSGYGLHGKGHEA 343
           +D  +                                 +DA++W+ +V G    G+  +A
Sbjct: 88  DDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDA 147

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           V  +  MV  G  P    +  VLS+C  +     G ++++ VI    +     +   V+ 
Sbjct: 148 VKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIK-LGLSSCVPVANSVLY 206

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           M G+ G  + A    + M V  S S W A+VS     G  ++
Sbjct: 207 MYGKCGDAETARAVFERMKVR-SESSWNAMVSLYTHQGRMDL 247


>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
          Length = 510

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/394 (40%), Positives = 245/394 (62%), Gaps = 5/394 (1%)

Query: 144 HGLSIKIGFVV--DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           H L IK+G     D  L+++L+S Y K     E   +FDE+  R+   +N  +S +A  G
Sbjct: 108 HSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGG 167

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
              LV  + ++F++M  RNV +WTAM++GY QNG  +EA+  FLEM  +  ++PN++++ 
Sbjct: 168 ---LVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVS 224

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVLP C+++  +  G+++  +A  K L  +V + NAL++MYSKCGS+  A +VF+     
Sbjct: 225 SVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQ 284

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D  +W+S++  + +HG   EA+ L+ K+   G KPD IT VGV+ AC   GL+NEG   
Sbjct: 285 QDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLF 344

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++S+   + +KP  E   C+VD+LGRAG L  +   I +MPVEP   IWGAL+ A   HG
Sbjct: 345 FDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHG 404

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ +LA   LI LEP+N +N V LSN+YASS +WD VA++  ++K++  KKS G S+I
Sbjct: 405 NVELAELAMDKLIHLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFI 464

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            + G  H F V DK+HP    +Y  L+ + + M+
Sbjct: 465 ELDGTMHKFLVEDKSHPRFEEVYNTLNSVTMTMK 498



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/371 (19%), Positives = 163/371 (43%), Gaps = 79/371 (21%)

Query: 42  SHSQILSLGHI--SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL------- 92
           SHS ++ LGH   S+PF+S+ L++ YA      +++ VF+ +  +D  +YN+L       
Sbjct: 107 SHSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKG 166

Query: 93  ------------------------INGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATI 127
                                   ++GY +N  H EA+E F  M+  + V P++ T++++
Sbjct: 167 GLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSV 226

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
                 +  + +G  +   +   G + +V +AN+L+ MY KCG   +   +F     + +
Sbjct: 227 LPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVF-----QGI 281

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
           G                            +++++ +W +MI  +  +G   EAL LF ++
Sbjct: 282 G----------------------------RQQDLCSWNSMIMAFAVHGLWREALALFYKL 313

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMY 302
           ++   ++P+ ++ V V+  C+    ++ GK         F+++  + H       ++D+ 
Sbjct: 314 RMAG-VKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRIEH----YGCMVDLL 368

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK--PDII 360
            + G L  +  +        DA+ W +++     HG    A L  +K++ L  +   +++
Sbjct: 369 GRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNVELAELAMDKLIHLEPQNTANLV 428

Query: 361 TIVGVLSACGR 371
            +  + ++ G+
Sbjct: 429 ILSNIYASSGK 439


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 173/499 (34%), Positives = 282/499 (56%), Gaps = 7/499 (1%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L K+ HS IL  G   + FV   LIT Y+ C +   ++++F+ +  +D   +N+++ GY 
Sbjct: 126 LAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYS 185

Query: 98  KNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           +   + E  ELF  M  S  V P+  T  ++ +   +  DL  G+ +H    +    +DV
Sbjct: 186 QGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDV 245

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            L N+++ +Y KCG       LF+EMP+++  ++   ISG+   G    V ++  +F + 
Sbjct: 246 SLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHG---FVNQAMDLFREQ 302

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           +R  +  W A+I+G VQN   + A+ +F  MQ      PN V+L S+LP  S    L GG
Sbjct: 303 ERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQ-SHGCRPNTVTLASILPVFSHFSTLKGG 361

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K+IHG+AIR   + ++ +  A+ID Y+KCG L  A+ VF D    +  I W+SI+S Y +
Sbjct: 362 KEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVF-DQIKGRSLIAWTSIISAYAV 420

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG  + A+ L+ +M+  G +PD +T   VL+AC  SG ++E  +I+N ++  Y I+P  E
Sbjct: 421 HGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVE 480

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             AC+V +L RAG+L  A++FI  MP+EP+  +WGAL++ + + G+ E+    +  L ++
Sbjct: 481 HYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEI 540

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           EPEN  NYV ++NLY+ S RW     +R +MK+  LKK PG SWI   G    F     +
Sbjct: 541 EPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIETSGGMQRFCXRHSS 600

Query: 517 HPCSVSIYEMLDDLILIMR 535
              +  +Y ML+ L+ +++
Sbjct: 601 VR-TPEVYGMLEGLLGLVK 618



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 215/476 (45%), Gaps = 82/476 (17%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            +Q    H   ++ KQ H++++    + + F+ +KLI+ Y+  G    +  VF  I  K+
Sbjct: 9   LIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKN 68

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSN---VSPDDFTLA-TISKLSGEIKDLNVGM 141
           ++ +N+L   Y  ++ H + L+LFS++  SN   V PD FT+  ++  L+    +  +  
Sbjct: 69  IFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAK 128

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   ++ G   D+ + N+L++ Y +C +      +FD MP+R+  SWN          
Sbjct: 129 EVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWN---------- 178

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   AM+ GY Q G  +E   LF  M     ++PN ++ V
Sbjct: 179 ------------------------AMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAV 214

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVL  C+    L+ G ++H F    ++  DVSL NA+I +Y+KCG LD AR +FE+    
Sbjct: 215 SVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMP-E 273

Query: 322 KDAITWSSIVSGYGLHG-------------------------------KGHEAVLLYNKM 350
           KD IT+ S++SGY +HG                               +   AV ++  M
Sbjct: 274 KDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAM 333

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRIKPTTEICACVVDMLGRAG 409
              G +P+ +T+  +L        +  G EI+   I NTY       +   ++D   + G
Sbjct: 334 QSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTY--DRNIYVATAIIDSYAKCG 391

Query: 410 QLDRA---LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ-DLAYKSLIQ-LEPEN 460
            L  A    D IK      S   W +++SA  +HG++ +   L Y+ L   ++P+ 
Sbjct: 392 YLHGAQLVFDQIKGR----SLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQ 443



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 11/239 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L V +   +LK  K+ H   +   +  N +V+T +I +YA CG    +QLVF+
Sbjct: 342 TVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFD 401

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I+ + +  + S+I+ Y  +   N AL LF  M  + + PD  T  ++        +L+ 
Sbjct: 402 QIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDE 461

Query: 140 GMLIHGLSI-KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGH 197
              I  + + + G    V     ++ +  + GK S+ +    +MP +     W   ++G 
Sbjct: 462 AWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGA 521

Query: 198 ASSGDFSLVVRSRRVFD---QMKRRNVYAWTAMINGYVQNG---DLDEALVLFLEMQLK 250
           + +GD  L    + VFD   +++  N   +  M N Y Q+G   D D    L  E++LK
Sbjct: 522 SVAGDVEL---GKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLK 577


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 287/506 (56%), Gaps = 10/506 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT--QSQLVFNSIQHKDVYLYNSL 92
           +LK  KQ H+Q++  G ++NP    + +   AL        +  + N   +  ++  NS+
Sbjct: 21  TLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNNNPTLFTLNSM 80

Query: 93  INGYVKNHGHNEALELFSNMYYSN---VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           I  Y K+   +++   ++N+ +SN   +SPD++T   + +   +++    G+ +HG  IK
Sbjct: 81  IRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIK 140

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            GF +D  +   L+ MY + G  S C N+FD   + ++ +    ++  A  GD      +
Sbjct: 141 HGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDF---A 197

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           R++FD+M  R+   W AMI GY Q G   EAL +F  MQ++  ++ N+VS+V VL  C+ 
Sbjct: 198 RKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEG-VKLNEVSMVLVLSACTH 256

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  L  G+ +H +  R ++   V+L  AL+DMY+KCG++D A +VF      ++  TWSS
Sbjct: 257 LQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMK-ERNVYTWSS 315

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
            + G  ++G G E++ L+N M   G +P+ IT + VL  C   GL+ EG + ++S+ N Y
Sbjct: 316 AIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVY 375

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I P  E    +VDM GRAG+L  AL+FI +MP+ P    W AL+ A  M+ N E+ ++A
Sbjct: 376 GIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIA 435

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            + +++LE +N   YV LSN+YA  + W++V+ LR  MK +G+KK PGCS I + G+ H 
Sbjct: 436 QRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHE 495

Query: 510 FSVADKAHPCSVSIYEMLDDLILIMR 535
           F V DK+HP    I   L+++   +R
Sbjct: 496 FIVGDKSHPRYDEIEMKLEEISKCLR 521


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/506 (34%), Positives = 280/506 (55%), Gaps = 44/506 (8%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L+ AY   G+  +++ +F S    ++   N L+ GYVK +   +A +LF  +      P 
Sbjct: 163 LLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQI------PV 216

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
              ++  + +SG  +D ++         +   V DV    +++  YV+ G   E   +FD
Sbjct: 217 RDLISWNTMISGYAQDGDLSQARR--LFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFD 274

Query: 181 EMPQR-------------------------------NVGSWNVRISGHASSGDFSLVVRS 209
           EMPQ+                               N+GSWN+ ISG+  +GD +   ++
Sbjct: 275 EMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLA---QA 331

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           R +FD M +R+  +W A+I GY QNG  +EA+ + +EM+ +D    N+ +    L  C+ 
Sbjct: 332 RNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMK-RDGESLNRSTFCCALSACAD 390

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           +  L  GKQ+HG  +R        + NAL+ MY KCG +D A  VF+    +KD ++W++
Sbjct: 391 IAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQ-HKDIVSWNT 449

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           +++GY  HG G +A+ ++  M+  G KPD IT+VGVLSAC  +GL + G E ++S+   Y
Sbjct: 450 MLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDY 509

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I P ++  AC++D+LGRAG L+ A + I+ MP EP  + WGAL+ AS +HGN E+ + A
Sbjct: 510 GITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQA 569

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            + + ++EP N   YV LSNLYA+S RW  V+++R  M+  G++K+PG SW+ +  K H 
Sbjct: 570 AEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHT 629

Query: 510 FSVADKAHPCSVSIYEMLDDLILIMR 535
           F+V D  HP    IY  L++L L M+
Sbjct: 630 FTVGDCFHPEKGRIYAFLEELDLKMK 655



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 196/399 (49%), Gaps = 33/399 (8%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++T YA   +   ++++F+S+  KDV  +N++++GYV++   +EA ++F  M + N    
Sbjct: 101 MLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISW 160

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
           +  LA   + SG +++     L    S       ++I  N LM  YVK     +   LFD
Sbjct: 161 NGLLAAYVR-SGRLEEAR--RLFESKSD-----WELISCNCLMGGYVKRNMLGDARQLFD 212

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           ++P R++ SWN  ISG+A  GD S   ++RR+F++   R+V+ WTAM+  YVQ+G LDEA
Sbjct: 213 QIPVRDLISWNTMISGYAQDGDLS---QARRLFEESPVRDVFTWTAMVYAYVQDGMLDEA 269

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL-----C 295
             +F EM  K  +  N              + ++G  Q     + +EL  ++        
Sbjct: 270 RRVFDEMPQKREMSYN--------------VMIAGYAQYKRMDMGRELFEEMPFPNIGSW 315

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           N +I  Y + G L  AR +F D    +D+++W++I++GY  +G   EA+ +  +M   G 
Sbjct: 316 NIMISGYCQNGDLAQARNLF-DMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGE 374

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
             +  T    LSAC     +  G +++  V+ T   K    +   +V M  + G +D A 
Sbjct: 375 SLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCL-VGNALVGMYCKCGCIDEAY 433

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
           D  + +  +   S W  +++    HG        ++S+I
Sbjct: 434 DVFQGVQHKDIVS-WNTMLAGYARHGFGRQALTVFESMI 471



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 170/362 (46%), Gaps = 32/362 (8%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+++S Y++  KFS   +LFD+MP +++ SWN+ ++G+A +     +  +R +FD M  +
Sbjct: 68  NAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARN---RRLRDARMLFDSMPEK 124

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           +V +W AM++GYV++G +DEA  +F  M  K+ I  N +    V          SG  + 
Sbjct: 125 DVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYV---------RSGRLEE 175

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
                  + + ++  CN L+  Y K   L  AR++F+     +D I+W++++SGY   G 
Sbjct: 176 ARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPV-RDLISWNTMISGYAQDGD 234

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             +A  L+ +        D+ T   ++ A  + G+++E   +++ +     +     I  
Sbjct: 235 LSQARRLFEE----SPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAG 290

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY-KSLIQLEP 458
                  +  ++D   +  + MP  P+   W  ++S    +G     DLA  ++L  + P
Sbjct: 291 -----YAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQNG-----DLAQARNLFDMMP 339

Query: 459 ENPS-NYVSLSNLYASSRRWDAVAELRTMMKDRG--LKKSPGCSWISIHGKTHCFSVADK 515
           +  S ++ ++   YA +  ++    +   MK  G  L +S  C  +S         +  +
Sbjct: 340 QRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQ 399

Query: 516 AH 517
            H
Sbjct: 400 VH 401



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 190/439 (43%), Gaps = 87/439 (19%)

Query: 40  KQSHSQILSLG--------HISNPFV--STKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
           +Q HS I  +         H  +P     TK I+ +   G    +  VF+++  ++   Y
Sbjct: 8   RQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSY 67

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N++I+GY++N   + A +LF  M +                                   
Sbjct: 68  NAMISGYLRNAKFSLARDLFDKMPHK---------------------------------- 93

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
                D+   N +++ Y +  +  +   LFD MP+++V SWN  +SG+  SG    V  +
Sbjct: 94  -----DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGH---VDEA 145

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           R VFD+M  +N  +W  ++  YV++G L+EA  LF   + K   E         L +C+ 
Sbjct: 146 RDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLF---ESKSDWE---------LISCNC 193

Query: 270 LIGLSGGKQIHGFAIRKELNH----DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
           L+G    + + G A R+  +     D+   N +I  Y++ G L  ARR+FE+S   +D  
Sbjct: 194 LMGGYVKRNMLGDA-RQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPV-RDVF 251

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           TW+++V  Y   G   EA  ++++M         + I G      +   ++ G E++  +
Sbjct: 252 TWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGY----AQYKRMDMGRELFEEM 307

Query: 386 INTYRIKPTTEICACVVDMLG--RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
                  P   I +  + + G  + G L +A +    MP   S S W A+++    +G  
Sbjct: 308 -------PFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVS-WAAIIAGYAQNG-- 357

Query: 444 EMQDLAYKSLIQLEPENPS 462
            + + A   L++++ +  S
Sbjct: 358 -LYEEAMNMLVEMKRDGES 375



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 2/224 (0%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A   +L+L KQ H Q++  G+     V   L+  Y  CG   ++  VF  +QHKD+
Sbjct: 385 LSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDI 444

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHG 145
             +N+++ GY ++    +AL +F +M  + V PD+ T+  +          + G    H 
Sbjct: 445 VSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHS 504

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFS 204
           ++   G   +      ++ +  + G   E  NL   MP + +  +W   +      G+  
Sbjct: 505 MNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNME 564

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           L  ++  +  +M+  N   +  + N Y  +G   +   + L+M+
Sbjct: 565 LGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMR 608



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 30/292 (10%)

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           IS H  +G   L +    VFD M  RN  ++ AMI+GY++N     A  LF +M  KD  
Sbjct: 40  ISTHMRNGHCDLALC---VFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLF 96

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE--LNHDVSLCNALIDMYSKCGSLDCA 311
             N +           L G +  +++    +  +     DV   NA++  Y + G +D A
Sbjct: 97  SWNLM-----------LTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEA 145

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
           R VF D   +K++I+W+ +++ Y   G+  EA  L+       S  ++I+   ++    +
Sbjct: 146 RDVF-DRMPHKNSISWNGLLAAYVRSGRLEEARRLFES----KSDWELISCNCLMGGYVK 200

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
             ++ +  ++++ +     I   T I     D     G L +A    +  PV    + W 
Sbjct: 201 RNMLGDARQLFDQIPVRDLISWNTMISGYAQD-----GDLSQARRLFEESPVRDVFT-WT 254

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483
           A+V A V  G   M D A +   ++  +   +Y  +   YA  +R D   EL
Sbjct: 255 AMVYAYVQDG---MLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGREL 303


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 183/560 (32%), Positives = 286/560 (51%), Gaps = 67/560 (11%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           S N    T    L +S+    + L +Q H QI   G+ S  FV + L+  YA  G    +
Sbjct: 133 SVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDA 192

Query: 75  QLVFNSIQHKDVYLYNSLINGYVK-------------------------------NHGHN 103
             +F  I  K++ +YN++I G ++                               N    
Sbjct: 193 NRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFK 252

Query: 104 EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163
           EA++ F  M       D FT  ++    G    L+ G  IH   I+  +  ++ + ++L+
Sbjct: 253 EAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALL 312

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
            MY KC               RNV                     +  VF +M+ +NV +
Sbjct: 313 DMYCKC---------------RNVK-------------------YAEAVFRKMRHKNVIS 338

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           WTAM+ GY QNG  +EA+ +F +MQ ++ I P+  +L SV+ +C++L  L  G Q HG A
Sbjct: 339 WTAMLVGYGQNGYSEEAVRIFCDMQ-RNEIHPDDFTLGSVISSCANLASLEEGAQFHGQA 397

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           +   L   V++ NALI +Y KCGSL+ A ++F +    +D ++W+++VSGY   GK +E 
Sbjct: 398 LASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKI-RDEVSWTALVSGYAQFGKANET 456

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + L+  M+  G  PD +T VGVLSAC R+GL+ +G   +  ++  +RI P  +   C++D
Sbjct: 457 ISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMID 516

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           +L RAG+L+ A +FI  MP  P    W  L+S+  ++GN E+   A +SL +LEP+NP++
Sbjct: 517 LLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPAS 576

Query: 464 YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSI 523
           Y+ LS++YA+  +WD VA+LR  M++ G+KK PG SWI    K H FS  D++ P S  I
Sbjct: 577 YILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQI 636

Query: 524 YEMLDDLILIMRGAAASPHL 543
           Y  L+ L L M      P +
Sbjct: 637 YAKLESLYLKMIEEGYVPDM 656



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 204/396 (51%), Gaps = 10/396 (2%)

Query: 51  HISNP--FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALEL 108
           HI  P  F    L++AY+  G     Q VF+S+ + DV  +NSL++GY  N   +E++ +
Sbjct: 65  HIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRV 124

Query: 109 FSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           ++ M    +V+ +  T +T+  LS     +++G  IHG   K G+   + + + L+ MY 
Sbjct: 125 YNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYA 184

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           K G  ++   +F+E+P++N+  +N  I+G         +V + ++FD M  ++  +WT +
Sbjct: 185 KTGFINDANRIFEEIPEKNIVVYNTMITGLLRC---RFIVEAEQLFDNMPEKDSISWTTI 241

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I G  QNG   EA+  F EM ++     ++ +  SVL  C   + L  GKQIH + IR +
Sbjct: 242 ITGLTQNGLFKEAVDKFKEMGIEG-FCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTD 300

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
              ++ + +AL+DMY KC ++  A  VF     +K+ I+W++++ GYG +G   EAV ++
Sbjct: 301 YQDNIFVGSALLDMYCKCRNVKYAEAVFRKMR-HKNVISWTAMLVGYGQNGYSEEAVRIF 359

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
             M      PD  T+  V+S+C     + EG + +   + +  I   T +   ++ + G+
Sbjct: 360 CDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVT-VSNALITLYGK 418

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            G L+ A      M +    S W ALVS     G +
Sbjct: 419 CGSLEHAHQLFHEMKIRDEVS-WTALVSGYAQFGKA 453



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 155/321 (48%), Gaps = 37/321 (11%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +  L N+L++ Y K G      N+FD +PQ N+ SWN  +S ++  G    +   +RVFD
Sbjct: 39  ETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLG---YLQDMQRVFD 95

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGL 273
            M   +V +W ++++GY  NG + E++ ++  M LKD  +  N+++  ++L   S+   +
Sbjct: 96  SMPNHDVVSWNSLLSGYAGNGLISESVRVY-NMMLKDGSVNLNRITFSTMLILSSNRGFV 154

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE----------------- 316
             G+QIHG   +      + + + L+DMY+K G ++ A R+FE                 
Sbjct: 155 DLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGL 214

Query: 317 -------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
                        D+   KD+I+W++I++G   +G   EAV  + +M   G   D  T  
Sbjct: 215 LRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFG 274

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            VL+ACG    ++EG +I+  +I T   +    + + ++DM  +   +  A    + M  
Sbjct: 275 SVLTACGGFLALDEGKQIHAYIIRT-DYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRH 333

Query: 424 EPSPSIWGALVSASVMHGNSE 444
           +   S W A++     +G SE
Sbjct: 334 KNVIS-WTAMLVGYGQNGYSE 353



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 32/193 (16%)

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE---- 316
            + L  C      +  K++H   IR   N +  L N LI+ Y K G L  AR VF+    
Sbjct: 9   TAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQ 68

Query: 317 --------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
                                     DS  N D ++W+S++SGY  +G   E+V +YN M
Sbjct: 69  PNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMM 128

Query: 351 VCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           +  GS   + IT   +L      G ++ G +I+  +   +  +    + + +VDM  + G
Sbjct: 129 LKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFK-FGYQSYLFVGSPLVDMYAKTG 187

Query: 410 QLDRALDFIKTMP 422
            ++ A    + +P
Sbjct: 188 FINDANRIFEEIP 200


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/510 (33%), Positives = 285/510 (55%), Gaps = 37/510 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R+L   +Q H+++++  +    F+ T+L+T Y  CG    ++ V + +  + V  + ++I
Sbjct: 56  RALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMI 115

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +GY +   H EAL+LF  M  +   P+++TLAT+       + +  G  +H L +K  F 
Sbjct: 116 SGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFE 175

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
             + + +SL+ MY K     E                                  +RRVF
Sbjct: 176 SHMFVGSSLLDMYAKSENIQE----------------------------------ARRVF 201

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D +  R+V + TA+I+GY Q G  +EAL LF ++   + ++ N V+  +++   S L  L
Sbjct: 202 DTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL-YSEGMQCNHVTFTTLVTALSGLASL 260

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GKQ+H   +RKEL   V+L N+LIDMYSKCG L  +RRVF D+   +  ++W++++ G
Sbjct: 261 DYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVF-DNMLERSVVSWNAMLMG 319

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG HG GHE + L+ K +    KPD +T++ VLS C   GL++EGL+I+++V+       
Sbjct: 320 YGRHGLGHEVISLF-KDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALL 378

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
            T    C++D+LGR+G+L++AL+ I+ MP E +PSIWG+L+ A  +H N  + +L  + L
Sbjct: 379 HTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKL 438

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           +++EPEN  NYV LSN+YA++  W  V ++R +M ++ + K PG SWI +    H F  +
Sbjct: 439 LEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSS 498

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           ++ HP    I   + ++ + ++ A   P L
Sbjct: 499 ERFHPSKKDINAKIKEIFVDIKAAGFVPDL 528



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 2/161 (1%)

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           + +  C     L  G+Q+H   I       V L   L+ MY +CG+LD AR V  D    
Sbjct: 47  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVL-DRMPE 105

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +  ++W++++SGY    +  EA+ L+ KM+  G  P+  T+  VL++C     I +G ++
Sbjct: 106 RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQV 165

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
           ++ ++ T   +    + + ++DM  ++  +  A     T+P
Sbjct: 166 HSLLVKT-NFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 205


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 169/526 (32%), Positives = 281/526 (53%), Gaps = 43/526 (8%)

Query: 5   SARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITA 64
           + R+  A  ++     +    FL  + +   +   +  HS ++ LG + + FV   LI A
Sbjct: 420 APRDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDA 479

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y+  G  + ++ VF+ +  +DV  +N+ +   V+                      +  L
Sbjct: 480 YSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVR----------------------EGEL 517

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           A + KL  E+ +                  D +  N+++  Y K G+      LF  MP+
Sbjct: 518 AGVRKLFDEMPEK-----------------DTVSWNTILDGYTKAGEVEAAFELFQRMPE 560

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           RNV SW+  +SG+   GD  +   +R +FD+M  +N+  WT M++   Q G +DEA  LF
Sbjct: 561 RNVVSWSTMVSGYCKKGDLEM---ARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLF 617

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
            +M+ +  +E +  ++VS+L  C+    LS GK+IH +  ++ L     +CNALIDM+ K
Sbjct: 618 AQMK-EASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCK 676

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           CG ++ A  VF+  +  KD+++W+SI+ G+ +HG G +A+ L+ +M   G  PD +T++ 
Sbjct: 677 CGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMIN 736

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
           VLSAC   G ++EG   ++++   Y I P  E   C++D+LGR G +  A+D IK+MP E
Sbjct: 737 VLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWE 796

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484
           P+  IWG+L+SA  +H N E  ++A   L +L+P N  NY  LSN+YA + +W  +A+ R
Sbjct: 797 PNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKAR 856

Query: 485 TMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
             MK  G +K+ G SW+ ++   H F+V D+ H  S  I EM+D L
Sbjct: 857 MQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRL 902


>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
          Length = 510

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/394 (40%), Positives = 245/394 (62%), Gaps = 5/394 (1%)

Query: 144 HGLSIKIGFVV--DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           H L IK+G     D  L+++L+S Y K     E   +FDE+  R+   +N  +S +A  G
Sbjct: 108 HSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGG 167

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
              LV  + ++F++M  RNV +WTAM++GY QNG  +EA+  FLEM  +  ++PN++++ 
Sbjct: 168 ---LVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVS 224

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVLP C+++  +  G+++  +A  K L  +V + NAL++MYSKCGS+  A +VF+     
Sbjct: 225 SVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQ 284

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D  +W+S++  + +HG   EA+ L+ K+   G KPD IT VGV+ AC   GL+NEG   
Sbjct: 285 QDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLF 344

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++S+   + +KP  E   C+VD+LGRAG L  +   I +MPVEP   IWGAL+ A   HG
Sbjct: 345 FDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHG 404

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ +LA   LI LEP+N +N V LSN+YASS +WD VA++  ++K++  KKS G S+I
Sbjct: 405 NVELAELAMDKLIHLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFI 464

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            + G  H F V DK+HP    +Y  L+ + + M+
Sbjct: 465 ELDGTMHKFLVEDKSHPRFEEVYNTLNSVTMTMK 498



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/371 (19%), Positives = 163/371 (43%), Gaps = 79/371 (21%)

Query: 42  SHSQILSLGHI--SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL------- 92
           SHS ++ LGH   S+PF+S+ L++ YA      +++ VF+ +  +D  +YN+L       
Sbjct: 107 SHSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKG 166

Query: 93  ------------------------INGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATI 127
                                   ++GY +N  H EA+E F  M+  + V P++ T++++
Sbjct: 167 GLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSV 226

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
                 +  + +G  +   +   G + +V +AN+L+ MY KCG   +   +F     + +
Sbjct: 227 LPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVF-----QGI 281

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
           G                            +++++ +W +MI  +  +G   EAL LF ++
Sbjct: 282 G----------------------------RQQDLCSWNSMIMAFAVHGLWREALALFYKL 313

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMY 302
           ++   ++P+ ++ V V+  C+    ++ GK         F+++  + H       ++D+ 
Sbjct: 314 RMAG-VKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRIEH----YGCMVDLL 368

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK--PDII 360
            + G L  +  +        DA+ W +++     HG    A L  +K++ L  +   +++
Sbjct: 369 GRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNVELAELAMDKLIHLEPQNTANLV 428

Query: 361 TIVGVLSACGR 371
            +  + ++ G+
Sbjct: 429 ILSNIYASSGK 439


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/538 (32%), Positives = 295/538 (54%), Gaps = 55/538 (10%)

Query: 12  LVTSRNY-TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
           L T R++ T++++   L+   T  +L+   Q H++I+  G   + F+ ++ +T       
Sbjct: 16  LPTLRSFDTTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFLISQFLTLCNSLSN 72

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
            + +  VFN +      L+N+ I GY +N+  +  + LF  M  S+  PD FT  ++ K 
Sbjct: 73  FSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKA 132

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK------------------- 171
             ++  +  G+  HG +++ G   DV +  SL+ +Y KCG+                   
Sbjct: 133 CSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSW 192

Query: 172 ---------FS---ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
                    FS   E   LFDEMP++N  SWN  ISG+   GD      +R++FD+M  R
Sbjct: 193 TAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLR---SARKMFDEMPHR 249

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKD---------------RIEPNKVSLVSVL 264
           NV ++T MI+GY ++GD+  A  +F E   +D                ++P++  +VS++
Sbjct: 250 NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLM 309

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELN-HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
             CS +  L   K +  +  +  ++ H   +  ALIDM +KCGS+D A ++FE+    +D
Sbjct: 310 SACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMP-KRD 368

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            I++ S++ G  +HG G +AV L+++M+  G  PD +    +L+AC R+GL++EG   + 
Sbjct: 369 LISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFE 428

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           S+   Y I P+ +  AC+VD+LGRAG+L  A + +K+MPVEP    WGAL+ A  +H + 
Sbjct: 429 SMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDI 488

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           E+ ++    L +LEP+N  NYV LSN+YA++ +W  V+ LR  M++RG++K PGCSWI
Sbjct: 489 ELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 546


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/510 (33%), Positives = 285/510 (55%), Gaps = 37/510 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R+L   +Q H+++++  +    F+ T+L+T Y  CG    ++ V + +  + V  + ++I
Sbjct: 24  RALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMI 83

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +GY +   H EAL+LF  M  +   P+++TLAT+       + +  G  +H L +K  F 
Sbjct: 84  SGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFE 143

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
             + + +SL+ MY K     E                                  +RRVF
Sbjct: 144 SHMFVGSSLLDMYAKSENIQE----------------------------------ARRVF 169

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D +  R+V + TA+I+GY Q G  +EAL LF ++   + ++ N V+  +++   S L  L
Sbjct: 170 DTLPERDVVSCTAIISGYAQKGLDEEALDLFRQL-YSEGMQCNHVTFTTLVTALSGLASL 228

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GKQ+H   +RKEL   V+L N+LIDMYSKCG L  +RRVF D+   +  ++W++++ G
Sbjct: 229 DYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVF-DNMLERSVVSWNAMLMG 287

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG HG GHE + L+ K +    KPD +T++ VLS C   GL++EGL+I+++V+       
Sbjct: 288 YGRHGLGHEVISLF-KDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALL 346

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
            T    C++D+LGR+G+L++AL+ I+ MP E +PSIWG+L+ A  +H N  + +L  + L
Sbjct: 347 HTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKL 406

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           +++EPEN  NYV LSN+YA++  W  V ++R +M ++ + K PG SWI +    H F  +
Sbjct: 407 LEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSS 466

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           ++ HP    I   + ++ + ++ A   P L
Sbjct: 467 ERFHPSKKDINAKIKEIFVDIKAAGFVPDL 496



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 2/161 (1%)

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           + +  C     L  G+Q+H   I       V L   L+ MY +CG+LD AR V  D    
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVL-DRMPE 73

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +  ++W++++SGY    +  EA+ L+ KM+  G  P+  T+  VL++C     I +G ++
Sbjct: 74  RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQV 133

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
           ++ ++ T   +    + + ++DM  ++  +  A     T+P
Sbjct: 134 HSLLVKT-NFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 173


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 179/509 (35%), Positives = 279/509 (54%), Gaps = 10/509 (1%)

Query: 38   LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
            L  + H  ++  G   + ++   L+  Y  C    ++  VF+ + + +  L+N  I   +
Sbjct: 541  LGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNL 600

Query: 98   KNHGHNEALELFSNMYYSNVSPDDFTLATISKLS-GEIKDLNVGMLIHGLSIKIGFVVDV 156
            ++    + +ELF  M +S +  +  T+  + + S  E+  LN+G   HG  ++ GF  DV
Sbjct: 601  QSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDV 660

Query: 157  ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
             +  SL+ MYVK    +    +FD M  RN+ +WN  +SG++  G F   +R   + +QM
Sbjct: 661  YVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALR---LLNQM 717

Query: 217  KRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
            ++     ++  W  MI+GY   G   EAL  F +MQ ++ + PN  S+  +L  C+SL  
Sbjct: 718  EKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQ-QEGVMPNSASITCLLRACASLSL 776

Query: 273  LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
            L  GK+IH  +IR     DV +  ALIDMYSK  SL  A +VF     NK   +W+ ++ 
Sbjct: 777  LQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQ-NKTLASWNCMIM 835

Query: 333  GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
            G+ + G G EA+ ++N+M  +G  PD IT   +LSAC  SGLI EG + ++S+I  YRI 
Sbjct: 836  GFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIV 895

Query: 393  PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
            P  E   C+VD+LGRAG LD A D I TMP++P  +IWGAL+ +  +H N +  + A K+
Sbjct: 896  PRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKN 955

Query: 453  LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
            L +LEP N +NY+ + NLY+   RW+ +  LR +M   G++     SWI I+ + H FS 
Sbjct: 956  LFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSS 1015

Query: 513  ADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             +K HP +  IY  L  L+  M+     P
Sbjct: 1016 DEKPHPDAGKIYFELYQLVSEMKKLGYVP 1044



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 161/346 (46%), Gaps = 39/346 (11%)

Query: 40  KQSHSQILSLGHISNPFVSTK-LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
           K  H+Q++ L    NP  + K LI++Y   G    + +VF     ++   +NS +  +  
Sbjct: 440 KMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKS 499

Query: 99  NHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           + G  +  LE+F  ++   V  D    +   K    + D+ +GM IHG  IK GF +DV 
Sbjct: 500 SAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVY 559

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           L  +LM+ Y +C    +   +F EMP      WN  I                       
Sbjct: 560 LRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAI----------------------- 596

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG-LSGG 276
                    ++N  +Q+  L + + LF +MQ    ++    ++V VL    S +G L+ G
Sbjct: 597 ---------ILN--LQSEKLQKGVELFRKMQF-SFLKAETATIVRVLQASISELGFLNMG 644

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K+ HG+ +R   + DV +  +LIDMY K  SL  A+ VF D+  N++   W+S+VSGY  
Sbjct: 645 KETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVF-DNMKNRNIFAWNSLVSGYSF 703

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
            G   +A+ L N+M   G KPD++T  G++S     G   E L  +
Sbjct: 704 KGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFF 749



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 145/360 (40%), Gaps = 82/360 (22%)

Query: 20  SATVQHFLQVSATHRS-LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           +AT+   LQ S +    L + K++H  +L  G   + +V T LI  Y      T +Q VF
Sbjct: 624 TATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVF 683

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT--------------- 123
           +++++++++ +NSL++GY       +AL L + M    + PD  T               
Sbjct: 684 DNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGK 743

Query: 124 --LATISKLSGE------------------IKDLNVGMLIHGLSIKIGFVVDVILANSLM 163
             LA  +++  E                  +  L  G  IH LSI+ GF+ DV +A +L+
Sbjct: 744 EALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALI 803

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
            MY K         +F  +  + + SWN                                
Sbjct: 804 DMYSKSSSLKNAHKVFRRIQNKTLASWN-------------------------------- 831

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC--SSLIGLSGGK---- 277
              MI G+   G   EA+ +F EMQ K  + P+ ++  ++L  C  S LIG  G K    
Sbjct: 832 --CMIMGFAIFGLGKEAISVFNEMQ-KVGVGPDAITFTALLSACKNSGLIG-EGWKYFDS 887

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            I  + I   L H    C  ++D+  + G LD A  +        DA  W +++    +H
Sbjct: 888 MITDYRIVPRLEH---YC-CMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIH 943



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 12/268 (4%)

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN-GDLDEALVLFLEMQLKDR 252
           IS +   GDF     +  VF     RN   W + +  +  + G L   L +F E+  K  
Sbjct: 463 ISSYLGFGDF---WSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGV 519

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           +  ++V  V+ L TC+ ++ +  G +IHG  I++  + DV L  AL++ Y +C  L+ A 
Sbjct: 520 VFDSEVYSVA-LKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKAN 578

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA-CGR 371
           +VF +   N +A+ W+  +       K  + V L+ KM     K +  TIV VL A    
Sbjct: 579 QVFHEMP-NPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISE 637

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
            G +N G E +  V+          +   ++DM  +   L  A      M    +   W 
Sbjct: 638 LGFLNMGKETHGYVLRN-GFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMK-NRNIFAWN 695

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           +LVS     G   M + A + L Q+E E
Sbjct: 696 SLVSGYSFKG---MFEDALRLLNQMEKE 720


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/483 (34%), Positives = 262/483 (54%), Gaps = 37/483 (7%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L+  Y+  G    +  VF ++  + V  + S+I GY +    + ++ LF  M    +SPD
Sbjct: 292 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPD 351

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            FT+ TI         L  G  +H    +     D+ ++N+LM MY KCG          
Sbjct: 352 IFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCG---------- 401

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                             S GD      +  VF +M+ +++ +W  MI GY +N   +EA
Sbjct: 402 ------------------SMGD------AHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEA 437

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF+EMQ   +  PN +++  +LP C+SL  L  G++IHG  +R   + D  + NAL+D
Sbjct: 438 LNLFVEMQYNSK--PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVD 495

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY KCG+L  AR +F D    KD ++W+ +++GYG+HG G EA+  +N+M   G +PD +
Sbjct: 496 MYLKCGALGLARLLF-DMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEV 554

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           + + +L AC  SGL++EG   +N + N   I+P +E  AC+VD+L RAG L +A  FIK 
Sbjct: 555 SFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKM 614

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP+EP  +IWGAL+    ++ + ++ +   + + +LEPEN   YV L+N+YA + +W+ V
Sbjct: 615 MPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEV 674

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540
            +LR  +  RGL+K+PGCSWI I GK H F   D +HP +  I  +L      M+     
Sbjct: 675 KKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHF 734

Query: 541 PHL 543
           P +
Sbjct: 735 PKM 737



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 125/433 (28%), Positives = 217/433 (50%), Gaps = 36/433 (8%)

Query: 55  PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY 114
           P VS+ L   Y  C     S L   +I  K +  YN  I  + +      A+EL      
Sbjct: 41  PLVSSNL---YHSCATIGTSVLPSETIDCK-ITDYNIEICRFCELGNLRRAMELI----- 91

Query: 115 SNVSPD-DFTLAT---ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            N SP  D  L T   + +L  ++K +  G  IH +       VD +L + L+ MYV CG
Sbjct: 92  -NQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCG 150

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDF----SLVVR-----------SRRVFDQ 215
              E   +FD++    V  WN+ ++G+A  G+F    SL  R           +R++FD+
Sbjct: 151 DLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDE 210

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           +  R+V +W +MI+GYV NG  ++ L LF +M L   I  +  ++VSV+  CS+   L  
Sbjct: 211 LGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLG-INTDLATMVSVVAGCSNTGMLLL 269

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+ +HG+AI+     +++L N L+DMYSK G+L+ A +VFE     +  ++W+S+++GY 
Sbjct: 270 GRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAGYA 328

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
             G    +V L+++M   G  PDI TI  +L AC  +GL+  G +++N  I   +++   
Sbjct: 329 REGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHN-YIKENKMQSDL 387

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            +   ++DM  + G +  A      M V+   S W  ++     +  + + + A    ++
Sbjct: 388 FVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVS-WNTMIGG---YSKNSLPNEALNLFVE 443

Query: 456 LEPENPSNYVSLS 468
           ++  +  N ++++
Sbjct: 444 MQYNSKPNSITMA 456



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 140/317 (44%), Gaps = 45/317 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A    L+  K  H+ I      S+ FVS  L+  YA CG    +  VF+ +
Sbjct: 354 TITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEM 413

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           Q KD+  +N++I GY KN   NEAL LF  M Y N  P+  T+A I      +  L  G 
Sbjct: 414 QVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQY-NSKPNSITMACILPACASLAALERGQ 472

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IHG  ++ GF +D  +AN+L+ MY+KCG       LFD +P++++ SW V         
Sbjct: 473 EIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTV--------- 523

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                    MI GY  +G   EA+  F EM+    IEP++VS +
Sbjct: 524 -------------------------MIAGYGMHGYGSEAIAAFNEMR-NSGIEPDEVSFI 557

Query: 262 SVLPTCSSLIGLSGGKQIHGF-----AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           S+L  CS    L  G            I  +  H       ++D+ ++ G+L  A +  +
Sbjct: 558 SILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYA----CIVDLLARAGNLSKAYKFIK 613

Query: 317 DSSFNKDAITWSSIVSG 333
                 DA  W +++ G
Sbjct: 614 MMPIEPDATIWGALLCG 630



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A+  +L+  ++ H  IL  G   +  V+  L+  Y  CG    ++L+F+
Sbjct: 452 SITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFD 511

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            I  KD+  +  +I GY  +   +EA+  F+ M  S + PD+ +  +I
Sbjct: 512 MIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISI 559


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/497 (34%), Positives = 275/497 (55%), Gaps = 38/497 (7%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H+ IL  G  S+ FV   LI+ Y+ CG       VF+  + KDV  + ++I+G+V+N 
Sbjct: 124 QFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRND 183

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILA 159
              EA+  F  M  S V+ ++ T+ ++ K + + +D+  G  IHG  ++ G V  DV + 
Sbjct: 184 SSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIG 243

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           +SL+ MY KCG + +                                  +++VFD+M  R
Sbjct: 244 SSLVDMYGKCGCYDD----------------------------------AQKVFDEMPSR 269

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV  WTA+I GYVQ    ++ + +F EM LK  + PN+ +L SVL  C+ +  L  G+++
Sbjct: 270 NVVTWTALIAGYVQGRCFEKGMFVFEEM-LKSDVAPNEKTLSSVLSACAHVGALHRGRRV 328

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H + I+  +  + ++   LID Y+KCG L+ A  VFE     K+  TW+++++G+  HG 
Sbjct: 329 HCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLR-EKNVYTWTAMINGFAAHGY 387

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
              AV L++ M+     P+ +T + VLSAC   GL+ EG  ++ S+   + ++P  +  A
Sbjct: 388 AIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYA 447

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VD+ GR G L+ A   I+ MP+EP+ ++WGAL  + ++H + E+   A   +I+L+P 
Sbjct: 448 CMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPS 507

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           +   Y  L+NLY+ S+ WD VA +R  MKD+ + KSPGCSWI + GK H F   D   P 
Sbjct: 508 HSGRYTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVKGKLHEFIAFDDKKPL 567

Query: 520 -SVSIYEMLDDLILIMR 535
            S  +Y+ LD++ + MR
Sbjct: 568 ESDDLYKTLDNVGVQMR 584



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 122/284 (42%), Gaps = 13/284 (4%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
            V A HR     ++ H  ++      N  V T LI  YA CG   ++ LVF  ++ K+VY
Sbjct: 318 HVGALHRG----RRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVY 373

Query: 88  LYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
            + ++ING+   HG+   A++LF  M  S+VSP++ T   +         +  G  +  L
Sbjct: 374 TWTAMINGFAA-HGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLF-L 431

Query: 147 SIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISGHASSGDF 203
           S+K  F ++    +   ++ ++ + G   E   L + MP     + W           D+
Sbjct: 432 SMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDY 491

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
            L   +     +++  +   +T + N Y ++ + D+   +  +M+ +  ++    S + V
Sbjct: 492 ELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEV 551

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNH---DVSLCNALIDMYSK 304
                  I     K +    + K L++    + L + L D+ S+
Sbjct: 552 KGKLHEFIAFDDKKPLESDDLYKTLDNVGVQMRLPDELEDLTSQ 595


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 283/514 (55%), Gaps = 18/514 (3%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  AT R L    ++H   + L    + +V+T+++      G+   +  VF  +   ++
Sbjct: 17  LRACATFRDLL---RAHGLAVRLCLSQSSYVATQIVHVCNGHGRAAHAARVFAHVPAPNL 73

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSP---------DDFTLATISKLSGEIKDL 137
           +L+N++I  Y +NH H +A+E++  M      P         D FT   + K  G +   
Sbjct: 74  HLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAAS 133

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            +G  +H    + G     I+ NSL+ MY +CG  S    +FD M +++  SWN  IS H
Sbjct: 134 QLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAH 193

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A  G      ++R +F  M  + V +WTA+++GY   GD   A+ +F +MQ++   EP+ 
Sbjct: 194 ARMGQMR---KARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEG-FEPDD 249

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           VS+V+VLP C+ L  L  G+ I+ +  +  +   + +CNAL++MY+KCG ++ A ++F  
Sbjct: 250 VSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHG 309

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLIN 376
            S  KD I+WS+ + G   HG+  EAV L+  M   G   P+ IT VG+LSAC  +GL++
Sbjct: 310 MS-EKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLD 368

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EGL  ++ +   Y ++P+ E   CVVD+LGR+G++ RALD I  MP+ P   IWG+L+SA
Sbjct: 369 EGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSA 428

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
              H + +   +A + L++LEPE+  N V L+N+YA++ RW  VA  R  ++ R  +K+P
Sbjct: 429 CRSHSDVDTAVVAAERLVELEPEDVGNLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTP 488

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           GCS I +      F   +   P    I  ++D L
Sbjct: 489 GCSMIEVDNVVREFVAGEDLGPELGGIAAIIDIL 522


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/530 (31%), Positives = 275/530 (51%), Gaps = 35/530 (6%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           LV+      AT+       A  R + L +  HS  +             L+  Y+ CG  
Sbjct: 137 LVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDL 196

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             ++ VF  +  + V  Y S+I GY +     EA++LF  M    +SPD +T+  +    
Sbjct: 197 DSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 256

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
              + L+ G  +H    +     D+ ++N+LM MY KCG   E                 
Sbjct: 257 ARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE----------------- 299

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                            +  VF +M+ +++ +W  +I GY +N   +EAL LF  +  + 
Sbjct: 300 -----------------AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK 342

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
           R  P++ ++  VLP C+SL     G++IHG+ +R     D  + N+L+DMY+KCG+L  A
Sbjct: 343 RFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 402

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
             +F+D + +KD ++W+ +++GYG+HG G EA+ L+N+M   G + D I+ V +L AC  
Sbjct: 403 HMLFDDIA-SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSH 461

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           SGL++EG   +N + +  +I+PT E  AC+VDML R G L +A  FI+ MP+ P  +IWG
Sbjct: 462 SGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWG 521

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
           AL+    +H + ++ +   + + +LEPEN   YV ++N+YA + +W+ V  LR  +  RG
Sbjct: 522 ALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRG 581

Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           L+K+PGCSWI I G+ + F   D ++P + +I   L  +   M     SP
Sbjct: 582 LRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSP 631



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 172/357 (48%), Gaps = 38/357 (10%)

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F+ ++ +    +N L+N   K+   + ++ LF  M  S V  D +T + +SK    ++ +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
           + G  +HG  +K GF     + NSL++ Y+K  +      +FDEM +R+V SWN  I+G 
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING- 119

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                                            YV NG  ++ L +F++M L   IE + 
Sbjct: 120 ---------------------------------YVSNGLAEKGLSVFVQM-LVSGIEIDL 145

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            ++VSV   C+    +S G+ +H   ++   + +   CN L+DMYSKCG LD A+ VF +
Sbjct: 146 ATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFRE 205

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
            S ++  ++++S+++GY   G   EAV L+ +M   G  PD+ T+  VL+ C R  L++E
Sbjct: 206 MS-DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE 264

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           G  ++   I    +     +   ++DM  + G +  A      M V+   S W  ++
Sbjct: 265 GKRVHE-WIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS-WNTII 319


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/483 (34%), Positives = 276/483 (57%), Gaps = 32/483 (6%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+Q++  GH  +PF+  +L+ + + C     +  +F    + +VYLY +LI+G+V +  +
Sbjct: 59  HAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNY 118

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EA++L+S M + ++ PD++ +A+I K  G    L  G  +H  ++K+GF  + ++   +
Sbjct: 119 LEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRI 178

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           M +Y KCG+  +   +F+EMP+  V                               ++  
Sbjct: 179 MELYGKCGELGDARRVFEEMPEDVVA------------------------------KDTV 208

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            WTAMI+G+V+N + + AL  F  MQ  + + PN+ ++V VL  CS L  L  G+ +H +
Sbjct: 209 CWTAMIDGFVRNEETNRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGRWVHSY 267

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
             + E+  ++ + NALI+MYS+CGS+D A+ VF D   ++D IT+++++SG  ++GK  +
Sbjct: 268 MRKFEIELNLFVGNALINMYSRCGSIDEAQTVF-DEMKDRDVITYNTMISGLSMNGKSRQ 326

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ L+  MV    +P  +T VGVL+AC   GL++ G EI++S+   YR++P  E   C+V
Sbjct: 327 AIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMV 386

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGR G+L+ A D I+TM + P   + G L+SA  MH N E+ +   K L      +  
Sbjct: 387 DLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSG 446

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            YV LS++YASS +W   A++R  MK+ G++K PGCS I ++ + H F + D  HP    
Sbjct: 447 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKER 506

Query: 523 IYE 525
           IYE
Sbjct: 507 IYE 509



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 144/331 (43%), Gaps = 53/331 (16%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           NY  A++   L+   +  +L+  ++ HS+ L LG  SN  V  +++  Y  CG+   ++ 
Sbjct: 137 NYLMASI---LKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARR 193

Query: 77  VFNSIQH----KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
           VF  +      KD   + ++I+G+V+N   N ALE F  M   NV P++FT+  +     
Sbjct: 194 VFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACS 253

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
           ++  L +G  +H    K    +++ + N+L++MY +CG   E   +FDEM  R+V ++N 
Sbjct: 254 QLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNT 313

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                                             MI+G   NG   +A+ LF  M +  R
Sbjct: 314 ----------------------------------MISGLSMNGKSRQAIELFRVM-VGRR 338

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD------VSLCNALIDMYSKCG 306
           + P  V+ V VL  CS      GG    GF I   +  D      +     ++D+  + G
Sbjct: 339 LRPTNVTFVGVLNACS-----HGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVG 393

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            L+ A  +        D I   +++S   +H
Sbjct: 394 RLEEAYDLIRTMKMTPDHIMLGTLLSACKMH 424



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 6/200 (3%)

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           IH   IR   + D  +   L+   SKC ++D A R+F+  + N +   +++++ G+   G
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQ-YTHNPNVYLYTALIDGFVSSG 116

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              EA+ LY++M+     PD   +  +L ACG    + EG E+++  +          + 
Sbjct: 117 NYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKL-GFSSNRLVR 175

Query: 399 ACVVDMLGRAGQLDRALDFIKTMP---VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
             ++++ G+ G+L  A    + MP   V      W A++   V +  +     A++ + Q
Sbjct: 176 LRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGM-Q 234

Query: 456 LEPENPSNYVSLSNLYASSR 475
            E   P+ +  +  L A S+
Sbjct: 235 GENVRPNEFTIVCVLSACSQ 254


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/530 (31%), Positives = 275/530 (51%), Gaps = 35/530 (6%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           LV+      AT+       A  R + L +  HS  +             L+  Y+ CG  
Sbjct: 288 LVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDL 347

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             ++ VF  +  + V  Y S+I GY +     EA++LF  M    +SPD +T+  +    
Sbjct: 348 DSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 407

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
              + L+ G  +H    +     D+ ++N+LM MY KCG   E                 
Sbjct: 408 ARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE----------------- 450

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                            +  VF +M+ +++ +W  +I GY +N   +EAL LF  +  + 
Sbjct: 451 -----------------AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK 493

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
           R  P++ ++  VLP C+SL     G++IHG+ +R     D  + N+L+DMY+KCG+L  A
Sbjct: 494 RFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 553

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
             +F+D + +KD ++W+ +++GYG+HG G EA+ L+N+M   G + D I+ V +L AC  
Sbjct: 554 HMLFDDIA-SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSH 612

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           SGL++EG   +N + +  +I+PT E  AC+VDML R G L +A  FI+ MP+ P  +IWG
Sbjct: 613 SGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWG 672

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
           AL+    +H + ++ +   + + +LEPEN   YV ++N+YA + +W+ V  LR  +  RG
Sbjct: 673 ALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRG 732

Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           L+K+PGCSWI I G+ + F   D ++P + +I   L  +   M     SP
Sbjct: 733 LRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSP 782



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 199/413 (48%), Gaps = 38/413 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   LQ+ A  +SLK  K+  + I   G + +  + +KL   Y  CG   ++  VF+ +
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + +    +N L+N   K+   + ++ LF  M  S V  D +T + +SK    ++ ++ G 
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HG  +K GF     + NSL++ Y+K  +      +FDEM +R+V SWN  I+G     
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING----- 270

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                        YV NG  ++ L +F++M L   IE +  ++V
Sbjct: 271 -----------------------------YVSNGLAEKGLSVFVQM-LVSGIEIDLATIV 300

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SV   C+    +S G+ +H   ++   + +   CN L+DMYSKCG LD A+ VF + S +
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS-D 359

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +  ++++S+++GY   G   EAV L+ +M   G  PD+ T+  VL+ C R  L++EG  +
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +   I    +     +   ++DM  + G +  A      M V+   S W  ++
Sbjct: 420 H-EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS-WNTII 470



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 37/302 (12%)

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D  TL ++ +L  + K L  G  +       GFV+D  L + L  MY  CG   E     
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKE----- 147

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
                                        + RVFD++K      W  ++N   ++GD   
Sbjct: 148 -----------------------------ASRVFDEVKIEKALFWNILMNELAKSGDFSG 178

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           ++ LF +M +   +E +  +   V  + SSL  + GG+Q+HGF ++       S+ N+L+
Sbjct: 179 SIGLFKKM-MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLV 237

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
             Y K   +D AR+VF++ +  +D I+W+SI++GY  +G   + + ++ +M+  G + D+
Sbjct: 238 AFYLKNQRVDSARKVFDEMT-ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDL 296

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
            TIV V + C  S LI+ G  +++  +           C  ++DM  + G LD A    +
Sbjct: 297 ATIVSVFAGCADSRLISLGRAVHSIGVKAC-FSREDRFCNTLLDMYSKCGDLDSAKAVFR 355

Query: 420 TM 421
            M
Sbjct: 356 EM 357



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           R+V      +  + ++G+L+ A+ L L +  K  I+P   +L SVL  C+    L  GK+
Sbjct: 59  RSVTDANTQLRRFCESGNLENAVKL-LCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKE 115

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +  F        D +L + L  MY+ CG L  A RVF++    K A+ W+ +++     G
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEK-ALFWNILMNELAKSG 174

Query: 339 KGHEAVLLYNKMVCLGSKPDIITI 362
               ++ L+ KM+  G + D  T 
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTF 198


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 181/510 (35%), Positives = 277/510 (54%), Gaps = 6/510 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  +  R+ +    +H   + LG++   FV   L+ + A  G    S+ +F  +
Sbjct: 109 TLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEM 168

Query: 82  Q-HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
             H++V  +N++I G  +    +EA  LF  M    V  D FT  ++  +  +  +L VG
Sbjct: 169 APHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVG 228

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
            L+H   +  G  VD+IL N+L+ MY KCG        FD MP +NV SW   +   A  
Sbjct: 229 RLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKH 288

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           G    V  +R  F+QM  RN+ +W AMI+ YVQ G   E L L+  M+    + P++V+L
Sbjct: 289 GS---VDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMK-SLGLTPDEVTL 344

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
             VL        L+ G+ IH +      +  V++ N+LIDMY++CG +D +  +F +   
Sbjct: 345 AGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMP- 403

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           NK+ I+W+ I+    +HG+  EAV+ +  MV     PD IT VG+LSAC   GL+ +G  
Sbjct: 404 NKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQY 463

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            + ++ + Y +KP  E  AC+VD+LGR G L +A+D IK MP++P   +WGAL+ A  +H
Sbjct: 464 YFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIH 523

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
           G+ E+  LA K L++LE  N   +V +SNL   +R+W+ +  LR +M+DRG KK  G S 
Sbjct: 524 GHVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSS 583

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           I I+   H F V D  H  S  IY  +D L
Sbjct: 584 IEINNSIHEFGVEDIRHESSSQIYAAVDQL 613



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 213/468 (45%), Gaps = 76/468 (16%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY-ALCGQP-----TQSQLVF 78
           H L++    RS++   Q H+ +L+ G  +   V  +L+ +Y AL G+        ++ +F
Sbjct: 5   HVLELLQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCHARRMF 64

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +   D + YNSLI  Y  +    EAL L  ++    + P++FTL  + K     +   
Sbjct: 65  DRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAE 124

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM-PQRNVGSWNVRISGH 197
             +  HG++IK+G+V  V + N+L+      G   +   LF EM P RNV SWN  I G 
Sbjct: 125 HALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGC 184

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A +G+ S                                  EA  LF EM+ +  +  + 
Sbjct: 185 AQAGETS----------------------------------EACALFREMR-RQGVLADV 209

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC------------ 305
            + VS+L  CS    L  G+ +H   +      D+ L NAL+DMY KC            
Sbjct: 210 FTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDV 269

Query: 306 -------------------GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
                              GS+D AR  FE     ++ I+W++++S Y   G+  E + L
Sbjct: 270 MPIKNVVSWTSMLCALAKHGSVDAARDWFEQMP-ERNIISWNAMISCYVQGGRFPETLGL 328

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           YN+M  LG  PD +T+ GVLS  G++G +  G  I+  + +++   P   +   ++DM  
Sbjct: 329 YNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFS-DPGVTVLNSLIDMYA 387

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
           R GQ+D ++     MP + + S W  ++ A  MHG ++   + +++++
Sbjct: 388 RCGQVDTSISLFTEMPNKNTIS-WNVIIGALAMHGRAQEAVMFFRAMV 434



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 161/348 (46%), Gaps = 21/348 (6%)

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           +SG A  GD +L   +RR+FD++   + +A+ ++I  Y  +G   EAL L  ++ L+  I
Sbjct: 48  LSGRA--GDVALC-HARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDV-LRRGI 103

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
            PN+ +L  VL  CS           HG AI+      V + NAL+   +  GSL  +RR
Sbjct: 104 LPNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRR 163

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           +F + + +++ ++W++++ G    G+  EA  L+ +M   G   D+ T V +L  C + G
Sbjct: 164 LFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEG 223

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            +  G  ++  ++ +   +    +   +VDM G+ G L  A      MP++   S W ++
Sbjct: 224 NLEVGRLVHCHMLASGS-RVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVS-WTSM 281

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           + A   HG+    D A     Q+   N  ++ ++ + Y    R+     L   MK  GL 
Sbjct: 282 LCALAKHGSV---DAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLT 338

Query: 494 KSPG--CSWISIHGKT---------HCFSVADKAHPCSVSIYEMLDDL 530
                    +S+HG+          HC+ + D      V++   L D+
Sbjct: 339 PDEVTLAGVLSVHGQNGDLASGRMIHCY-IQDSFSDPGVTVLNSLIDM 385


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 169/526 (32%), Positives = 281/526 (53%), Gaps = 43/526 (8%)

Query: 5   SARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITA 64
           + R+  A  ++     +    FL  + +   +   +  HS ++ LG + + FV   LI A
Sbjct: 113 APRDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDA 172

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y+  G  + ++ VF+ +  +DV  +N+ +   V+                      +  L
Sbjct: 173 YSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVR----------------------EGEL 210

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           A + KL  E+ +                  D +  N+++  Y K G+      LF  MP+
Sbjct: 211 AGVRKLFDEMPEK-----------------DTVSWNTILDGYTKAGEVEAAFELFQRMPE 253

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           RNV SW+  +SG+   GD  +   +R +FD+M  +N+  WT M++   Q G +DEA  LF
Sbjct: 254 RNVVSWSTMVSGYCKKGDLEM---ARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLF 310

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
            +M+ +  +E +  ++VS+L  C+    LS GK+IH +  ++ L     +CNALIDM+ K
Sbjct: 311 AQMK-EASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCK 369

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           CG ++ A  VF+  +  KD+++W+SI+ G+ +HG G +A+ L+ +M   G  PD +T++ 
Sbjct: 370 CGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMIN 429

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
           VLSAC   G ++EG   ++++   Y I P  E   C++D+LGR G +  A+D IK+MP E
Sbjct: 430 VLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWE 489

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484
           P+  IWG+L+SA  +H N E  ++A   L +L+P N  NY  LSN+YA + +W  +A+ R
Sbjct: 490 PNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKAR 549

Query: 485 TMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
             MK  G +K+ G SW+ ++   H F+V D+ H  S  I EM+D L
Sbjct: 550 MQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRL 595


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 290/512 (56%), Gaps = 16/512 (3%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNS 80
            L+  +  R LK+    H+ +L      + F +++LI   A C   T + L     V + 
Sbjct: 23  LLECCSNARDLKII---HAHMLRTHLFFDVFAASRLI---AFCIDSTTNLLHYAIRVASQ 76

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           IQ+ ++++YN+LI G   +     +   +       + PD+ T   + K   ++++  +G
Sbjct: 77  IQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMG 136

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
           M  HG +IK GF  D  + NSL+ MY   G  +   ++F  M + +V SW   I+G+   
Sbjct: 137 MQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRC 196

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           GD      +R +FD+M  RN+  W+ MI+GY +N   ++A+  F  +Q  + +  N+  +
Sbjct: 197 GDAK---SARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQ-AEGVVANETVM 252

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           V V+ +C+ L  L+ G++ H + +R +L+ ++ L  A++DMY++CG+++ A  VFE    
Sbjct: 253 VGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLP- 311

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            KD + W+++++G  +HG   +A+  +++M   G  P  IT   VL+AC  +G++  GLE
Sbjct: 312 EKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLE 371

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           I+ S+   + ++P  E   C+VD+LGRAG+L +A  F+  MPV+P+  IW AL+ A  +H
Sbjct: 372 IFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIH 431

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
            N E+ +   K L++++PE   +YV LSN+YA + +W  V  +R MMKD+G++K PG S 
Sbjct: 432 KNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSL 491

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           I I GK H F++ DK HP    I  + +D+IL
Sbjct: 492 IEIDGKVHEFTIGDKTHPEIEKIERIWEDIIL 523


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 299/516 (57%), Gaps = 16/516 (3%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKL---ITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           +L   KQ H+ I       + +V T L   IT        T   L+F+ +   + +LY++
Sbjct: 23  TLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSA 82

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           LI  Y +N   + ++ L+++M  +NVSP  FT + +  L   +K+ ++G  +H  +   G
Sbjct: 83  LIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSL---LKNPSLGSQLHLHAFLFG 139

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           FV D+ + N+++ MYVK G       +FDEMP R+V +W   I  +A SGD      +  
Sbjct: 140 FVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMD---SACE 196

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +F  +  +++ AWT+M+ GY QN    +AL  F +M+ +  +  ++++LV  +  C+ L 
Sbjct: 197 LFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMR-EAGVVTDEITLVGAISACAQL- 254

Query: 272 GLSG-GKQIHGFAIRKELNH--DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           G+SG    I   A         +V + +ALIDMYSKCG+++ A  VF+      +  ++S
Sbjct: 255 GVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMK-EMNVFSYS 313

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           S++ G+ +HG+   A+ L+ +M+  G KP+ +T VG+ +AC  +G++ +G +++ ++   
Sbjct: 314 SMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKEC 373

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           Y + PT +  AC+ D+LGRAG L++AL  ++TMP+EP+  +WGAL+ AS +HGN ++ ++
Sbjct: 374 YGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEI 433

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI-HGKT 507
           A +SL +LEP+N  NY+ LS  YA + +WD V+ +R +M+++ L+K+PGCSW+   +G  
Sbjct: 434 ASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGII 493

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           H F   D  HP    I + LDDL+  ++     P L
Sbjct: 494 HEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKL 529


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 188/574 (32%), Positives = 299/574 (52%), Gaps = 34/574 (5%)

Query: 2   ILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
           + SS       VT++  +  +    L    + +S +  K+ H+Q++  G I + F++TK 
Sbjct: 6   LFSSFWRQITTVTTKFKSKNSNYKTLSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKT 65

Query: 62  ITAYALCGQPTQSQL-VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           + +YA+  +       VF  I + D Y + ++I G+V+     +ALE +  M    V  +
Sbjct: 66  VESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELN 125

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            FT   + K  G       G ++HG  +K+GF  DV   N+L+ MY+KCG  ++   LFD
Sbjct: 126 KFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFD 185

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVR----------------------------SRRV 212
           EMP  NV +WN  I+G    GD     R                            +R +
Sbjct: 186 EMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSL 245

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
           FD M  R+V +W +MI+ YVQNG   EAL LF EM L   +  + + + S+L  C+ +  
Sbjct: 246 FDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAG-VSADSIIITSILSACAQIGA 304

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  G+ IH +  R +L +DV L  AL+DMY+KCG +D A  VF ++   K+  +W++++S
Sbjct: 305 LDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVF-NTMPRKNLCSWNAMLS 363

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           G  +HG G  A+ L+ +M   G  P+ IT V VLSAC   G + EG + +N +   + I 
Sbjct: 364 GLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNIT 423

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           P  E   C+VD+L R G ++ A + I+TMP+EP+  IWGAL++A  +HG + + +     
Sbjct: 424 PKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGY 483

Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL-KKSPGCSWISIHGKTHCFS 511
           + +L  E+   YV LSN++A+  +W+ V + R MMK  G+ KK PG S I +    H F 
Sbjct: 484 IQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKKIPGYSSIELDSVVHDFF 543

Query: 512 VADKAHPCSVSIYEMLDDL--ILIMRGAAASPHL 543
             D+ H     +  +++ L   L ++G  A+P L
Sbjct: 544 AEDRLHSKWREVSTVIERLNTHLEVKGYEANPSL 577


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 187/566 (33%), Positives = 295/566 (52%), Gaps = 79/566 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L   A+  +L+  KQ H   +  G + + FV   L++ YA C +  ++  VF  I
Sbjct: 236 TLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGI 295

Query: 82  QHKDVYLYNSLINGYV------------------------------------KNHGHNEA 105
           + KDV  +N+++ GY                                     K HG  EA
Sbjct: 296 KKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGF-EA 354

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-------DVIL 158
           L++F  M    + P+  TLA++      +  L  G   H   IK    +       D+++
Sbjct: 355 LDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLV 414

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            N L+ MY KC  +    ++FD +                                + K 
Sbjct: 415 LNGLIDMYAKCKSYRVARSIFDSI--------------------------------EGKD 442

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEM-QLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
           +NV  WT MI GY Q+G+ ++AL LF ++ + K  ++PN  +L   L  C+ L  L  G+
Sbjct: 443 KNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGR 502

Query: 278 QIHGFAIRKELNHDV-SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           Q+H +A+R E   +V  + N LIDMYSK G +D AR VF++    ++ ++W+S+++GYG+
Sbjct: 503 QLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKL-RNVVSWTSLMTGYGM 561

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG+G EA+ L+++M  LG   D IT + VL AC  SG++++G+  ++ ++  + I P  E
Sbjct: 562 HGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAE 621

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             AC+VD+LGRAG+L+ A++ IK M +EP+  +W AL+SAS +H N E+ + A   L +L
Sbjct: 622 HYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTEL 681

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
             EN  +Y  LSNLYA++RRW  VA +R++MK  G++K PGCSWI     T  F V D++
Sbjct: 682 GAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRS 741

Query: 517 HPCSVSIYEMLDDLILIMRGAAASPH 542
           HP S  IY +L DLI  ++     P 
Sbjct: 742 HPESEQIYNLLLDLIKRIKDMGYVPQ 767



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 218/427 (51%), Gaps = 19/427 (4%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK---DVYLYNS 91
           SL+     H+ + + G  SN F+   ++  Y  CG    +  +F+ +  +   D+  +NS
Sbjct: 142 SLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNS 201

Query: 92  LINGYVKNHGHNEALEL---FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           ++  YV+      AL +     N Y   + PD  TL  I      +  L  G  +HG S+
Sbjct: 202 ILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSV 261

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           + G V DV + N+L+SMY KC K +E   +F+ + +++V SWN  ++G++  G F   + 
Sbjct: 262 RNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALS 321

Query: 209 SRRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
             ++  +   + +V  W+A+I GY Q G   EAL +F +MQL   +EPN V+L S+L  C
Sbjct: 322 LFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYG-LEPNVVTLASLLSGC 380

Query: 268 SSLIGLSGGKQIHGFAIRKELN-------HDVSLCNALIDMYSKCGSLDCARRVFED-SS 319
           +S+  L  GKQ H + I+  LN        D+ + N LIDMY+KC S   AR +F+    
Sbjct: 381 ASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEG 440

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINE 377
            +K+ +TW+ ++ GY  HG+ ++A+ L+ ++    +  KP+  T+   L AC R G +  
Sbjct: 441 KDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRL 500

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G +++   +          +  C++DM  ++G +D A      M +    S W +L++  
Sbjct: 501 GRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVS-WTSLMTGY 559

Query: 438 VMHGNSE 444
            MHG  E
Sbjct: 560 GMHGRGE 566



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 176/392 (44%), Gaps = 72/392 (18%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI--QHKDVYLYNS 91
           ++L   K +H QI   G      + +  + AY  CG   ++  +   +   H  V+ +N+
Sbjct: 41  KTLINAKLAHQQIFVHGFTE---MFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNA 97

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           LI   VK    ++ L  +  M      PD +T   + K  GEI  L  G  +H +    G
Sbjct: 98  LIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANG 157

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              +V + NS+++MY +CG   +   +FDE+ +R +                        
Sbjct: 158 LGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKI------------------------ 193

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM--QLKDRIEPNKVSLVSVLPTCSS 269
                   ++ +W +++  YVQ G    AL +   M      ++ P+ ++LV++LP C+S
Sbjct: 194 -------EDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACAS 246

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED------------ 317
           +  L  GKQ+HGF++R  L  DV + NAL+ MY+KC  ++ A +VFE             
Sbjct: 247 VFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAM 306

Query: 318 -------SSFNK---------------DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
                   SF+                D ITWS++++GY   G G EA+ ++ +M   G 
Sbjct: 307 VTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGL 366

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +P+++T+  +LS C   G +  G + +  VI 
Sbjct: 367 EPNVVTLASLLSGCASVGALLYGKQTHAYVIK 398



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 47/292 (16%)

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
            V+ W A+I   V+ G LD+ L  + +MQ    + P+  +   VL  C  +  L  G  +
Sbjct: 91  TVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWL-PDHYTFPFVLKACGEIPSLRHGASV 149

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK--DAITWSSIVSGYGLH 337
           H       L  +V +CN+++ MY +CG+LD A ++F++    K  D ++W+SI++ Y   
Sbjct: 150 HAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQG 209

Query: 338 GKGHEAVLLYNKM---VCLGSKPDIITIVGVLSACG----------------RSGLINEG 378
           G+   A+ +  +M     L  +PD IT+V +L AC                 R+GL+++ 
Sbjct: 210 GQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDD- 268

Query: 379 LEIYNSVINTY----RIKPTTEICA-----------CVVDMLGRAGQLDRALDFIKTMPV 423
           + + N++++ Y    ++    ++              +V    + G  D AL   K M  
Sbjct: 269 VFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQE 328

Query: 424 EP---SPSIWGALVS--ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           E        W A+++  A   HG   +       L  LEP    N V+L++L
Sbjct: 329 EDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEP----NVVTLASL 376


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 184/579 (31%), Positives = 299/579 (51%), Gaps = 60/579 (10%)

Query: 24  QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83
           + F+ +  + ++ +   Q  +QI++ G   N FV+   IT  +   +   ++ +F+ I  
Sbjct: 13  EKFITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQ 72

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
            +   +N++  GY++N  H + + LF  +      P+ FT   I K  G+++ +  G  +
Sbjct: 73  PNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEV 132

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD- 202
           H  + K GF  +  +A SL+ MY K G   +   +F EM +RNV  W   I+G+   GD 
Sbjct: 133 HCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDV 192

Query: 203 ------FSL---------------------VVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
                 F L                     +  +R +FD+M  R+  +W AM+NGY  NG
Sbjct: 193 VSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNG 252

Query: 236 DLD-------------------------------EALVLFLEMQLKDRIEPNKVSLVSVL 264
           +++                               E L  F  M ++  + PN  +LV+VL
Sbjct: 253 EVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVL 312

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             CS L  L  GK +H +A       ++ + N LIDMY+KCG ++ A  VF +    KD 
Sbjct: 313 SACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVF-NCLDRKDI 371

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           I+W++I++G  +HG   +A+ ++++M   G +PD +T VG+LSAC   GL+ +G   + S
Sbjct: 372 ISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKS 431

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +++ Y I P  E   C+VD+LGRAG LD+AL+FI+ MP+EP   IW AL+ A  ++ N E
Sbjct: 432 MVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVE 491

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           + +LA + LI+LEP NP+N+V +SN+Y    R + VA L+  M+D G +K PGCS I  +
Sbjct: 492 IAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECN 551

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
                F   D+ H  + SIY +L  L +++R     P+L
Sbjct: 552 DSVVEFYSLDERHSETESIYRVLKGLTMLLRSHGYVPNL 590


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/482 (35%), Positives = 261/482 (54%), Gaps = 36/482 (7%)

Query: 50  GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELF 109
           G + + FV   LI  YA CG    + ++F+++Q K V  +N++I GYVKN    E +E+F
Sbjct: 201 GFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMF 260

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
             M       D+ TL +++   G + D N+G  I   + + G +    LA +L+ MY KC
Sbjct: 261 KGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKC 320

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           G+                                    ++RR+FD+M  R+V AW+AMI+
Sbjct: 321 GELD----------------------------------KARRLFDRMHSRDVVAWSAMIS 346

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           GY Q+    EAL +F EMQ  + + PN V++VSVL  C+ L  L  GK +H +  RK+L 
Sbjct: 347 GYTQSDRCREALAIFNEMQGTE-VNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLP 405

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
             V L  AL+D Y+KCG +  A + FE     ++  TW++++ G   +G+  EA+ L++ 
Sbjct: 406 LTVILGTALVDFYAKCGCIKDAVKAFESMPV-RNTWTWTALIKGMASNGRSREALELFSS 464

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M+    +P  +T +GVL AC    L+ EG   + S+   Y I P  E   C+VD+LGRAG
Sbjct: 465 MLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAG 524

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
            +D A  FI+ MP+EP+  +W AL+SA  +H N E+ + A K ++ L+P +  NY+ LSN
Sbjct: 525 LIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSN 584

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
            YAS  +W   A +R  MK++G++K PGCS I + G    F   D  HP    IYE + +
Sbjct: 585 TYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHE 644

Query: 530 LI 531
           +I
Sbjct: 645 MI 646


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 173/516 (33%), Positives = 290/516 (56%), Gaps = 19/516 (3%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           T R +KL    H  ++      + F++  LI AY+ CG    +   F  + +K    +N+
Sbjct: 22  TARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNT 81

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           LI+ Y K    +EA  LF  M   NV      ++  S +SG ++ L     +HG+++ +G
Sbjct: 82  LISFYSKTGFFDEAHNLFDKMPQRNV------VSYNSLISGNLQWLR---QVHGVAVIVG 132

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              +VIL N+L+  Y KCG+ +   ++F  MP+RNV SW   +  +  +        + R
Sbjct: 133 MEWNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLD---EACR 189

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VF  M  +N  +WTA++ G+V+NG  DEA  +F +M L++ + P+  + VSV+  C+   
Sbjct: 190 VFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQM-LEEGVRPSAPTFVSVIDACAQEA 248

Query: 272 GLSGGKQIHGFAIRKELN---HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            +  GKQ+HG  IR + +    +V +CNALIDMY+KCG +  A  +FE +   +D +TW+
Sbjct: 249 LIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPM-RDVVTWN 307

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           ++++G+  +G G E++ ++ +M+    +P+ +T +GVLS C  +GL NEGL++ + +   
Sbjct: 308 TLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQ 367

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP--VEPSPSIWGALVSASVMHGNSEMQ 446
           Y +KP  E  A ++D+LGR  +L  A+  I+ +P  ++   ++WGA++ A  +HGN ++ 
Sbjct: 368 YGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLA 427

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
             A + L +LEPEN   YV L+N+YA+S +W     +R +MK+R L+K P CS I +   
Sbjct: 428 RKAAEKLFELEPENTGRYVMLANIYAASGKWGGAKRIRNVMKERCLEKEPACSRIELRNA 487

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
            H F   DK HP    I E+   L+L  + A   P+
Sbjct: 488 RHEFVAKDKFHPQVEEICEVNSKLVLHSKDAGYQPY 523


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 184/584 (31%), Positives = 301/584 (51%), Gaps = 69/584 (11%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           + L+V   +  LK  K+ H Q+++    +N F  T ++  YA C Q   +  +F+ +  +
Sbjct: 152 YLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPER 211

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D+  +N++I G+ +N    +ALEL   M      PD  TL T+   + ++  L VG  IH
Sbjct: 212 DLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIH 271

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFS------------------------------- 173
           G +I+ GF   V ++ +L  MY KCG                                  
Sbjct: 272 GYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE 331

Query: 174 ECLNLFDEMPQRNVGSWNVRIS---------GHASSGDF--------------------- 203
           + + +F++M +  +    V I          G    G F                     
Sbjct: 332 KAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLI 391

Query: 204 SLVVRSRRV------FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           S+  + +RV      F+ +  R   +W AMI GY QNG + EAL  F EM+    ++P+ 
Sbjct: 392 SMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK-SLGMKPDS 450

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            ++VSV+P  + L      K IHG  IR  L+ ++ +  AL+DMYSKCG++  AR++F+ 
Sbjct: 451 FTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM 510

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
            S ++  ITW++++ GYG HG G  A+ L++KM     +P+ IT + V+SAC  SGL++E
Sbjct: 511 IS-DRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDE 569

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           GL  + S+   Y ++P+ +    +VD+LGRAG++  A DFI+ MP+ P  +++GA++ A 
Sbjct: 570 GLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGAC 629

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
            +H N E+ + A K L +L P+    +V L+N+YAS+ +W  VAE+R  M+ +GLKK+PG
Sbjct: 630 KIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPG 689

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           CS + +  + H F      HP S  IY  L++L+  ++ A   P
Sbjct: 690 CSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVP 733



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 196/425 (46%), Gaps = 46/425 (10%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           S+K   Q    ++  G  +     TKL++ ++  G   ++  VF  I  K   LY++++ 
Sbjct: 61  SMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY KN     AL     M Y +V P  +    + K+ G+  DL  G  IHG  I   F  
Sbjct: 121 GYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +V     +++MY KC +  +   +FD MP+R++ SWN                       
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNT---------------------- 218

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                       +I G+ QNG   +AL L L MQ + +  P+ ++LV+VLP  + +  L 
Sbjct: 219 ------------IIAGFSQNGFAKKALELVLRMQDEGQ-RPDSITLVTVLPAAADVGLLM 265

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK IHG+AIR      V++  AL DMYSKCGS++ AR +F D    K  ++W+S++ GY
Sbjct: 266 VGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIF-DGMDQKTVVSWNSMMDGY 324

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G+  +A+ ++ KM+  G  P  +TI+  L AC   G +  G +  +  ++   +   
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSD 383

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN--------SEMQ 446
             +   ++ M  +  ++D A D    +      S W A++     +G         SEM+
Sbjct: 384 ISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVS-WNAMILGYAQNGRVSEALNCFSEMK 442

Query: 447 DLAYK 451
            L  K
Sbjct: 443 SLGMK 447



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 127/271 (46%), Gaps = 5/271 (1%)

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            + RVF+ +  +    +  M+ GY +N  L+ AL     M+  D ++P   +   +L  C
Sbjct: 99  EAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDD-VKPVVYNFTYLLKVC 157

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
                L  GK+IHG  I      +V     +++MY+KC  +D A ++F D    +D ++W
Sbjct: 158 GDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMF-DRMPERDLVSW 216

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++I++G+  +G   +A+ L  +M   G +PD IT+V VL A    GL+  G  I+   I 
Sbjct: 217 NTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIR 276

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
               K    I   + DM  + G ++ A      M  +   S W +++   V +G  E   
Sbjct: 277 AGFAK-LVNISTALADMYSKCGSVETARLIFDGMDQKTVVS-WNSMMDGYVQNGEPEKAI 334

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
             ++ +++ E  +P+    +  L+A +   D
Sbjct: 335 AVFEKMLE-EGIDPTGVTIMEALHACADLGD 364



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 7/242 (2%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+   L   A    L+  K  H  +  L   S+  V   LI+ Y+ C +   +  +F
Sbjct: 348 TGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIF 407

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           N++  +    +N++I GY +N   +EAL  FS M    + PD FT+ ++     E+    
Sbjct: 408 NNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTR 467

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
               IHGL I+     ++ +  +L+ MY KCG       LFD +  R+V +WN  I G+ 
Sbjct: 468 HAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYG 527

Query: 199 SSGDFSLVVRSRRVFDQMKR----RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           + G   L   +  +FD+MK+     N   + ++I+    +G +DE L  F  M+    +E
Sbjct: 528 THG---LGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLE 584

Query: 255 PN 256
           P+
Sbjct: 585 PS 586



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 7/212 (3%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           +L  C+S+  L    QI    I+  L ++      L+ ++SK GS++ A RVFE      
Sbjct: 55  LLELCTSMKEL---HQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKL 111

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           DA+ + +++ GY  +     A+    +M     KP +     +L  CG +  +  G EI+
Sbjct: 112 DAL-YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIH 170

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
             +I T            VV+M  +  Q+D A      MP E     W  +++    +G 
Sbjct: 171 GQLI-TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMP-ERDLVSWNTIIAGFSQNGF 228

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           ++ + L     +Q E + P +   ++ L A++
Sbjct: 229 AK-KALELVLRMQDEGQRPDSITLVTVLPAAA 259


>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
 gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
          Length = 545

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 179/513 (34%), Positives = 279/513 (54%), Gaps = 17/513 (3%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  AT R L    ++H   + L    + +V+T+++      G+   +  VF  I   ++
Sbjct: 17  LRTCATFRDLL---RAHGLAVRLCLSQSSYVATQIVHICNAHGRAAHAARVFAQIPAPNL 73

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSP--------DDFTLATISKLSGEIKDLN 138
           +L+N++I  Y +NH H +A+E++  M      P        D FT   + K  G +    
Sbjct: 74  HLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAASR 133

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  +H    + G     ++ NSL+ MY +CG  S     FD M +++V SWN  IS HA
Sbjct: 134 LGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHA 193

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
             G      R+R +F  M  + V +WTA+++GY   GD   A+ +F  MQ++   EP+ V
Sbjct: 194 RMGQMR---RARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEG-FEPDDV 249

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           S+V+VLP C+ L  L  G+ I+ +  +  +   V +CNAL++MY+KCG ++ A ++F   
Sbjct: 250 SIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGM 309

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINE 377
           S  KD I+WS+ + G   HG+  EAV L+  M   G   P+ IT VG+LSAC  +GL++E
Sbjct: 310 S-EKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDE 368

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           GL   + +   Y ++P  E   CVVD+LGR+G++ RALD I+ MPV P   IWG+L+SA 
Sbjct: 369 GLRYLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSAC 428

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
             HG+ E   +A + L++LEP +  N V L+N+Y ++ RW  VA  R  ++ R  +K+PG
Sbjct: 429 RSHGDVETAVVAAERLVELEPGDVGNLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPG 488

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           CS I +      F       P    I  +LD L
Sbjct: 489 CSMIEVDNVVREFVAGQDLGPELGGIATVLDIL 521



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 149/393 (37%), Gaps = 78/393 (19%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+      + +L +Q H+ +   G  S+  V   LI  Y  CG  + ++  F+ +
Sbjct: 118 TYPFLLKACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGM 177

Query: 82  QHKDVYLYNSLI-------------------------------NGYVKNHGHNEALELFS 110
           + KDV  +N+LI                               +GY        A+E+F 
Sbjct: 178 REKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFR 237

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M      PDD ++  +     ++  L +G  I+    K G +  V + N+LM MY KCG
Sbjct: 238 LMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCG 297

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
              E L LF  M +++V SW+  I G A+ G      R+R                    
Sbjct: 298 CIEEALQLFHGMSEKDVISWSTAIGGLAAHG------RAR-------------------- 331

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
                   EA+ LF  M  + R+ PN ++ V +L  CS       G    G     ++  
Sbjct: 332 --------EAVRLFEVMDREGRVMPNGITFVGLLSACS-----HAGLVDEGLRYLDQMKE 378

Query: 291 D------VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           D      V     ++D+  + G +  A           D   W S++S    HG    AV
Sbjct: 379 DYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVETAV 438

Query: 345 LLYNKMVCL--GSKPDIITIVGVLSACGRSGLI 375
           +   ++V L  G   +++ +  V  A GR G +
Sbjct: 439 VAAERLVELEPGDVGNLVMLANVYGAAGRWGEV 471


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 175/507 (34%), Positives = 277/507 (54%), Gaps = 6/507 (1%)

Query: 30  SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
           S T   +KL K+ H  +L  G  ++ FV   LIT Y+ C     S+ VF+ +  +DV  +
Sbjct: 136 SFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSW 195

Query: 90  NSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           NS+I+GY +   + +   L+  M  +S   P+  T+ ++ +  G+ +DL  GM +H   +
Sbjct: 196 NSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIV 255

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
                +D+ + N+L+ +Y KCG       LFDEM +++  ++   ISG    G    V +
Sbjct: 256 DNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHG---YVDQ 312

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           S  +F  MK + +  W A+I G VQN   +  L L  EMQ      PN V+L SVL T +
Sbjct: 313 SLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALG-FRPNAVTLSSVLSTIA 371

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
               L GGK+IH +AI+   + ++ +  A+IDMY+K G L  A+RVF D S ++  + W+
Sbjct: 372 YFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVF-DQSKDRSLVIWT 430

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +I+S Y +HG  + A+ L+++M+  G +PD +T   VL+AC   G++++  EI+ S+   
Sbjct: 431 AIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKK 490

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           Y I+P  E  ACVV  LG+A +L  A +F+  MP+EPS  +WGAL+  + +  + E+   
Sbjct: 491 YGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKVWGALLHGASISSDVELGKS 550

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
               L ++EPEN  NYV ++NLY+ + RW    E+R  M   GL+K PG SWI       
Sbjct: 551 VCDYLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMNKVGLQKIPGSSWIETSEGLR 610

Query: 509 CFSVADKAHPCSVSIYEMLDDLILIMR 535
            F   D        I+ +L  L+ +MR
Sbjct: 611 SFIATDTCTENVEEIHVILKGLLGLMR 637



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 230/488 (47%), Gaps = 71/488 (14%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H++++        ++++KL+  Y+       ++ VF+ I HK+ + YN+++  Y  +
Sbjct: 44  KQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLH 103

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSG-EIKDLNVGMLIHGLSIKIGFVVDVIL 158
           + H +AL+LFS++  SN+  +      +  LS   + D+ +G  +HG  ++ GF  DV +
Sbjct: 104 NRHGDALDLFSSLASSNLVNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFV 163

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            N+L++ Y KC        +FD M +R+V SWN                           
Sbjct: 164 ENALITYYSKCYDLDLSRKVFDRMTKRDVVSWN--------------------------- 196

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
                  +MI+GY Q G  ++   L+ EM       PN V++VSVL  C     L+ G +
Sbjct: 197 -------SMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGME 249

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +H F +  ++  D+S+CNALI +Y+KCGSLD AR +F++ S  KD +T+ +I+SG  LHG
Sbjct: 250 VHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMS-EKDEVTYGAIISGLMLHG 308

Query: 339 ---------KG---------------------HEAVL-LYNKMVCLGSKPDIITIVGVLS 367
                    +G                     HE VL L  +M  LG +P+ +T+  VLS
Sbjct: 309 YVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLS 368

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
                  +  G EI++  I          +   ++DM  ++G L R    +     + S 
Sbjct: 369 TIAYFSSLKGGKEIHSYAIKI-GYHRNIYVATAIIDMYAKSGYL-RGAQRVFDQSKDRSL 426

Query: 428 SIWGALVSASVMHGNSEMQ-DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL-RT 485
            IW A++SA  +HG++ +   L ++ L Q    +P  + ++    A     D   E+  +
Sbjct: 427 VIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFES 486

Query: 486 MMKDRGLK 493
           M K  G++
Sbjct: 487 MFKKYGIQ 494



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 10/246 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L   A   SLK  K+ HS  + +G+  N +V+T +I  YA  G    +Q VF+
Sbjct: 360 AVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFD 419

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
             + + + ++ ++I+ Y  +   N AL LF  M    + PD  T   +         ++ 
Sbjct: 420 QSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDK 479

Query: 140 GM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGH 197
              +   +  K G    V     ++    K  + SE      +MP + +   W   + G 
Sbjct: 480 AWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAKVWGALLHGA 539

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           + S D  L         +++  N   +  M N Y Q G   EA       ++++R+  NK
Sbjct: 540 SISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEA------DEVRERM--NK 591

Query: 258 VSLVSV 263
           V L  +
Sbjct: 592 VGLQKI 597


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 173/512 (33%), Positives = 276/512 (53%), Gaps = 39/512 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T   F    A   SL     +HS +  L   S+P  +  LITAYA CG    ++ VF+ I
Sbjct: 124 TFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEI 183

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNM-YYSNVSPDDFTLATISKLSGEIKDLNVG 140
            H+D   +NS+I GY K     EA+E+F  M       PD+ +L ++    GE+ DL +G
Sbjct: 184 PHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELG 243

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             + G  ++ G  ++  + ++L+SMY KCG+                             
Sbjct: 244 RWVEGFVVERGMTLNSYIGSALISMYAKCGELES-------------------------- 277

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                   +RR+FD M  R+V  W A+I+GY QNG  DEA++LF  M+ +D +  NK++L
Sbjct: 278 --------ARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMK-EDCVTANKITL 328

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            +VL  C+++  L  GKQI  +A ++   HD+ +  ALIDMY+K GSLD A+RVF+D   
Sbjct: 329 TAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMP- 387

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG--SKPDIITIVGVLSACGRSGLINEG 378
            K+  +W++++S    HGK  EA+ L+  M   G  ++P+ IT VG+LSAC  +GL++EG
Sbjct: 388 QKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEG 447

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
             +++ +   + + P  E  +C+VD+L RAG L  A D I+ MP +P     GAL+ A  
Sbjct: 448 YRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACR 507

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
              N ++ +   + +++++P N  NY+  S +YA+   W+  A +R +M+ +G+ K+PGC
Sbjct: 508 SKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGC 567

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           SWI +    H F   D     S+ +  ++D L
Sbjct: 568 SWIEVENHLHEFHAGDGLCLDSIDLSNIIDLL 599


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 180/555 (32%), Positives = 291/555 (52%), Gaps = 66/555 (11%)

Query: 6   ARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           A NT     S N T  T+   L++S+++  + L KQ H Q++ LG  S   V + L+  Y
Sbjct: 125 AYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMY 184

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSL------------------------------ING 95
           A  G  + ++ VF  +  ++  +YNSL                              I G
Sbjct: 185 ANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKG 244

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
             +N    EA+E F  M    +  D +   ++    G +  +N G  IH   I+  F   
Sbjct: 245 LAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDH 304

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + + ++L+ MY KC    +CL+                               ++ VFD+
Sbjct: 305 IYVGSALIDMYCKC----KCLHY------------------------------AKTVFDR 330

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           MK++NV +WTAM+ GY Q G  +EA+ +FL+MQ +  I+P+  +L   +  C+++  L  
Sbjct: 331 MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQ-RSGIDPDHYTLGQAISACANVSSLEE 389

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G Q HG AI   L H V++ N+L+ +Y KCG +D + R+F + +  +DA++W+++VS Y 
Sbjct: 390 GSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV-RDAVSWTAMVSAYA 448

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
             G+  E + L++KMV  G KPD +T+ GV+SAC R+GL+ +G   +  + + Y I P+ 
Sbjct: 449 QFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSI 508

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
              +C++D+  R+G+L+ A+ FI  MP  P    W  L+SA    GN E+   A +SLI+
Sbjct: 509 GHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIE 568

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           L+P +P+ Y  LS++YAS  +WD+VA+LR  M+++ +KK PG SWI   GK H FS  D+
Sbjct: 569 LDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDE 628

Query: 516 AHPCSVSIYEMLDDL 530
           + P    IY  L++L
Sbjct: 629 SSPYLDQIYAKLEEL 643



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 224/453 (49%), Gaps = 23/453 (5%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM- 112
           N F    L+ AY+  G  ++ +  F  +  +D   +N LI GY  +     A++ ++ M 
Sbjct: 71  NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130

Query: 113 --YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
             + +N++    TL T+ KLS     +++G  IHG  IK+GF   +++ + L+ MY   G
Sbjct: 131 RDFSANLT--RVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVG 188

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
             S+   +F  +  RN   +N  + G  + G   ++  + ++F  M++ +V +W AMI G
Sbjct: 189 CISDAKKVFYGLDDRNTVMYNSLMGGLLACG---MIEDALQLFRGMEKDSV-SWAAMIKG 244

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
             QNG   EA+  F EM+++  ++ ++    SVLP C  L  ++ GKQIH   IR     
Sbjct: 245 LAQNGLAKEAIECFREMKVQG-LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQD 303

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
            + + +ALIDMY KC  L  A+ VF D    K+ ++W+++V GYG  G+  EAV ++  M
Sbjct: 304 HIYVGSALIDMYCKCKCLHYAKTVF-DRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDM 362

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G  PD  T+   +SAC     + EG + +   I +  I   T +   +V + G+ G 
Sbjct: 363 QRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVT-VSNSLVTLYGKCGD 421

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPENPSNYVSLS 468
           +D +      M V  + S W A+VSA    G +      +  ++Q  L+P+     V+L+
Sbjct: 422 IDDSTRLFNEMNVRDAVS-WTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDG----VTLT 476

Query: 469 NLYASSRRWDAVAE----LRTMMKDRGLKKSPG 497
            + ++  R   V +     + M  + G+  S G
Sbjct: 477 GVISACSRAGLVEKGQRYFKLMTSEYGIVPSIG 509



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 157/355 (44%), Gaps = 39/355 (10%)

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           +IHG  I+     +  L N+++  Y      +    +FD +PQ N+ SWN  +  ++ +G
Sbjct: 27  MIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAG 86

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
              L+      F+++  R+   W  +I GY  +G +  A+  +  M         +V+L+
Sbjct: 87  ---LISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLM 143

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF------ 315
           ++L   SS   +S GKQIHG  I+      + + + L+ MY+  G +  A++VF      
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203

Query: 316 ------------------EDS-----SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
                             ED+        KD+++W++++ G   +G   EA+  + +M  
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKV 263

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G K D      VL ACG  G INEG +I+  +I T   +    + + ++DM  +   L 
Sbjct: 264 QGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGSALIDMYCKCKCLH 322

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYV 465
            A      M  +   S W A+V   V +G +   + A K  + ++    +P +Y 
Sbjct: 323 YAKTVFDRMKQKNVVS-WTAMV---VGYGQTGRAEEAVKIFLDMQRSGIDPDHYT 373



 Score = 39.3 bits (90), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 31/141 (21%)

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE-------------------- 316
           K IHG  IR     +  L N ++  Y+   S   ARRVF+                    
Sbjct: 26  KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85

Query: 317 ------DSSFNK----DAITWSSIVSGYGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGV 365
                 +S+F K    D +TW+ ++ GY L G    AV  YN M+    +    +T++ +
Sbjct: 86  GLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTM 145

Query: 366 LSACGRSGLINEGLEIYNSVI 386
           L     +G ++ G +I+  VI
Sbjct: 146 LKLSSSNGHVSLGKQIHGQVI 166


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 162/458 (35%), Positives = 258/458 (56%), Gaps = 36/458 (7%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF  +  KDV  YN++I GY ++  + +AL +   M  +++ PD FTL+++  +  E  D
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVD 257

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           +  G  IHG  I+ G   DV + +SL+ MY K  +  +                      
Sbjct: 258 VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIED---------------------- 295

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                       S RVF ++  R+  +W +++ GYVQNG  +EAL LF +M +  +++P 
Sbjct: 296 ------------SERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQM-VTAKVKPG 342

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            V+  SV+P C+ L  L  GKQ+HG+ +R     ++ + +AL+DMYSKCG++  AR++F+
Sbjct: 343 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFD 402

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
             +   D ++W++I+ G+ LHG GHEAV L+ +M   G KP+ +  V VL+AC   GL++
Sbjct: 403 RMNV-LDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVD 461

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           E    +NS+   Y +    E  A V D+LGRAG+L+ A +FI  M VEP+ S+W  L+S+
Sbjct: 462 EAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSS 521

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N E+ +   + +  ++ EN   YV + N+YAS+ RW  +A+LR  M+ +GL+K P
Sbjct: 522 CSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKP 581

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
            CSWI +  KTH F   D++HP    I E L  ++  M
Sbjct: 582 ACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQM 619



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 215/430 (50%), Gaps = 15/430 (3%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQIL---SLGHISNPFVSTKLITAYALCGQPTQSQ 75
           + A ++  ++     +S    KQ H+Q +   SL H S   V    I+ Y       ++ 
Sbjct: 4   SKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIV----ISIYTNLKLLHEAL 59

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
           L+F +++   V  + S+I  +      ++AL  F  M  S   PD     ++ K    + 
Sbjct: 60  LLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMM 119

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC---GKFSECLNLFDEMPQRNVGSWNV 192
           DL  G  +HG  +++G   D+   N+LM+MY K    G      N+FDEMPQR   S + 
Sbjct: 120 DLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDE 179

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            +        F  +   RRVF+ M R++V ++  +I GY Q+G  ++AL +  EM   D 
Sbjct: 180 DVKAETCIMPFG-IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTD- 237

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           ++P+  +L SVLP  S  + +  GK+IHG+ IRK ++ DV + ++L+DMY+K   ++ + 
Sbjct: 238 LKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSE 297

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           RVF    + +D I+W+S+V+GY  +G+ +EA+ L+ +MV    KP  +    V+ AC   
Sbjct: 298 RVF-SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHL 356

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
             ++ G +++  V+          I + +VDM  + G +  A      M V    S W A
Sbjct: 357 ATLHLGKQLHGYVLRG-GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTA 414

Query: 433 LVSASVMHGN 442
           ++    +HG+
Sbjct: 415 IIMGHALHGH 424



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 38/320 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L + + +  +   K+ H  ++  G  S+ ++ + L+  YA   +   S+ VF+
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 301

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  +D   +NSL+ GYV+N  +NEAL LF  M  + V P     +++      +  L++
Sbjct: 302 RLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHL 361

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG  ++ GF  ++ +A++L+ MY KCG       +FD M   +  SW   I GHA 
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
            G                           +G+       EA+ LF EM+ +  ++PN+V+
Sbjct: 422 HG---------------------------HGH-------EAVSLFEEMK-RQGVKPNQVA 446

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRK--ELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            V+VL  CS  +GL      +  ++ K   LN ++    A+ D+  + G L+ A      
Sbjct: 447 FVAVLTACSH-VGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISK 505

Query: 318 SSFNKDAITWSSIVSGYGLH 337
                    WS+++S   +H
Sbjct: 506 MCVEPTGSVWSTLLSSCSVH 525


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 174/517 (33%), Positives = 288/517 (55%), Gaps = 9/517 (1%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           +VSA    ++L    H     +  +S+PFV T L+  YA CG+   ++ VF+ +  +DV 
Sbjct: 126 KVSALFEGMEL----HGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVV 181

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            +N++I  Y +    +EA +LF  M  SNV PD+  L  I    G   ++     I+   
Sbjct: 182 TWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFL 241

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           I+    +D  L  +L++MY   G     +  F +M  RN+      +SG++ +G      
Sbjct: 242 IENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLD--- 298

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            +R +FDQ + +++  WT MI+ Y ++    EAL +F EM     I+P+ V+++SV+  C
Sbjct: 299 DARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSG-IKPDVVTMLSVISAC 357

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
            +L  L   K +H +     L   + + NALI+MY+KCG LD AR VFE     ++ ++W
Sbjct: 358 VNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMP-TRNVVSW 416

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           SS+++ + +HG+  +++ L+ +M     +P+ +T VGVL  C  SGL+ EG +I+ S+ +
Sbjct: 417 SSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTD 476

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            Y I P  E   C+VD+ GRA  L  AL+ I++MP+ P+  IWG+L+SA  +HG  E+ +
Sbjct: 477 EYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGE 536

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
           LA K +++LEP++    V +SN+YA   RWD V  +R +M+ + + K  G S I ++GK+
Sbjct: 537 LAAKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKS 596

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
           H F + DK H  S  IY  L +++  ++ A   P  G
Sbjct: 597 HEFLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGG 633



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 188/396 (47%), Gaps = 26/396 (6%)

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
           ++NSL+    ++      +  +  + +     D  +   I K   ++  L  GM +HG +
Sbjct: 81  VFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFA 140

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
            KI  + D  +   LM MY  CG+ +   N+FDEM QR+V +WN  I  +     F L+ 
Sbjct: 141 FKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCR---FGLLD 197

Query: 208 RSRRVFDQMKRRNVYAWTAMI------NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
            + ++F++MK  NV     ++       G   N   + A+  FL       IE N V + 
Sbjct: 198 EAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFL-------IE-NDVRMD 249

Query: 262 SVLPTCSSLIGLSGGKQIHGFAI---RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           + L T  +L+ +  G      A+   RK    ++ +  A++  YSK G LD AR +F+ +
Sbjct: 250 THLLT--ALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQT 307

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              KD + W++++S Y       EA+ ++ +M C G KPD++T++ V+SAC   G +++ 
Sbjct: 308 EM-KDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKA 366

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
             ++    +   ++    I   +++M  + G LD A D  + MP     S W ++++A  
Sbjct: 367 KWVHRYT-HLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVS-WSSMINAFA 424

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           MHG +    L+  + ++ E   P+    +  LY  S
Sbjct: 425 MHGEAS-DSLSLFAQMKQENVEPNEVTFVGVLYGCS 459



 Score = 38.5 bits (88), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 87/203 (42%), Gaps = 10/203 (4%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +++  L  C SL  +   KQ+H   +R  +NH ++     +   S   +L  A  +F   
Sbjct: 17  TILEKLSFCKSLNHI---KQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSI 73

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
           S   ++I ++S++      G+    +L Y ++  +G + D I+   +L A  +   + EG
Sbjct: 74  SPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEG 133

Query: 379 LEIYNSVINTYRI-KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           +E++        +  P  E    ++DM    G+++ A +    M  +     W  ++   
Sbjct: 134 MELHGFAFKIATLSDPFVE--TGLMDMYAACGRINYARNVFDEMS-QRDVVTWNTMIERY 190

Query: 438 VMHGNSEMQDLAYKSLIQLEPEN 460
              G   + D A+K   +++  N
Sbjct: 191 CRFG---LLDEAFKLFEEMKDSN 210


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 171/505 (33%), Positives = 284/505 (56%), Gaps = 36/505 (7%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           ++ +Q HS ++ +   S+ FVS  L+  Y+ C     +++ FN +  KD+  +N++I+GY
Sbjct: 349 QMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 408

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            +     EAL LF  M+   +  +  TL+TI K +  ++ ++V   +HGLS+K GF  D+
Sbjct: 409 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDI 468

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            + NSL+  Y KC                                  S V  + R+F++ 
Sbjct: 469 YVVNSLIDSYGKC----------------------------------SHVEDAERIFEEC 494

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
              ++ ++T+MI  Y Q G  +EAL LFLEMQ  + ++P++    S+L  C++L     G
Sbjct: 495 TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDME-LKPDRFVCSSLLNACANLSAFEQG 553

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           KQ+H   ++     D+   N+L++MY+KCGS+D A R F + +  +  ++WS+++ G   
Sbjct: 554 KQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT-ERGIVSWSAMIGGLAQ 612

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG G +A+ L+N+M+  G  P+ IT+V VL AC  +GL+ E    + S+   +  KP  E
Sbjct: 613 HGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQE 672

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             AC++D+LGRAG+++ A++ +  MP E + S+WGAL+ A+ +H + E+   A + L  L
Sbjct: 673 HYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFIL 732

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           EPE    +V L+N+YAS+ +W+ VAE+R +M+D  +KK PG SWI +  K + F V D++
Sbjct: 733 EPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRS 792

Query: 517 HPCSVSIYEMLDDLILIMRGAAASP 541
           H  S  IY  LD+L  +M  A   P
Sbjct: 793 HYRSQEIYAKLDELSDLMDKAGYVP 817



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/505 (25%), Positives = 252/505 (49%), Gaps = 50/505 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  +  + L++ KQ H  ++  G   + FV+  L+  YA C +   S+ +F+ I
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             ++V  +N+L + YV+     EA+ LF  M  S + P++F+L+++      ++D + G 
Sbjct: 219 PERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGK 278

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG----- 196
           +IHG  IK+G+  D   AN+L+ MY K G  ++ +++F+++ Q ++ SWN  I+G     
Sbjct: 279 IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338

Query: 197 ----------------HAS------SGDF-------------SLVVRSRRVFDQMKRRNV 221
                           H+S        D               L+  +R  F+ +  +++
Sbjct: 339 HHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 398

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            AW A+I+GY Q  +  EAL LF+EM  K+ I  N+ +L ++L + + L  +   +Q+HG
Sbjct: 399 IAWNAIISGYSQYWEDMEALSLFVEMH-KEGIGFNQTTLSTILKSTAGLQVVHVCRQVHG 457

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
            +++   + D+ + N+LID Y KC  ++ A R+FE+ +   D ++++S+++ Y  +G+G 
Sbjct: 458 LSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIG-DLVSFTSMITAYAQYGQGE 516

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA-- 399
           EA+ L+ +M  +  KPD      +L+AC       +G +++   ++  +     +I A  
Sbjct: 517 EALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLH---VHILKYGFVLDIFAGN 573

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            +V+M  + G +D A      +  E     W A++     HG+       +  +++ E  
Sbjct: 574 SLVNMYAKCGSIDDAGRAFSEL-TERGIVSWSAMIGGLAQHGHGRQALQLFNQMLK-EGV 631

Query: 460 NPSNYVSLSNLYASSRRWDAVAELR 484
           +P N+++L ++  +      V E +
Sbjct: 632 SP-NHITLVSVLGACNHAGLVTEAK 655



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 186/383 (48%), Gaps = 48/383 (12%)

Query: 12  LVTSRNYTSATVQH--FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCG 69
           L+   N+T  +V +   L    T +SL+   Q H+ I   G   +P +   LI  Y+ C 
Sbjct: 46  LIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCR 105

Query: 70  QPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK 129
               ++ + +     D+  +++LI+GY +N     AL  F  M+   V  ++FT +++ K
Sbjct: 106 XFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLK 165

Query: 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189
               +KDL +G  +HG+ +  GF  DV +AN+L+ MY KC +F +   LFDE+P+RNV S
Sbjct: 166 ACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVS 225

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
           WN                                  A+ + YVQ     EA+ LF EM L
Sbjct: 226 WN----------------------------------ALFSCYVQXDFCGEAVGLFYEMVL 251

Query: 250 KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
              I+PN+ SL S++  C+ L   S GK IHG+ I+   + D    NAL+DMY+K G L 
Sbjct: 252 SG-IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLA 310

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL---------LYNKMVCLGSKPDII 360
            A  VFE      D ++W+++++G  LH + HE  L         L++ ++ +  + D+ 
Sbjct: 311 DAISVFEKIK-QPDIVSWNAVIAGCVLH-EHHEQALELLGQMKRQLHSSLMKMDMESDLF 368

Query: 361 TIVGVLSACGRSGLINEGLEIYN 383
             VG++    +  L+ +    +N
Sbjct: 369 VSVGLVDMYSKCDLLEDARMAFN 391



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 164/357 (45%), Gaps = 54/357 (15%)

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
           N +P   + + +       K L  G+ IH    K G   D  + N L+++Y KC  F   
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXF--- 107

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
                               G+A           R++ D+    ++ +W+A+I+GY QNG
Sbjct: 108 --------------------GYA-----------RKLVDESSEPDLVSWSALISGYAQNG 136

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
               AL+ F EM L   ++ N+ +  SVL  CS +  L  GKQ+HG  +      DV + 
Sbjct: 137 LGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVA 195

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           N L+ MY+KC     ++R+F D    ++ ++W+++ S Y       EAV L+ +MV  G 
Sbjct: 196 NTLVVMYAKCDEFLDSKRLF-DEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGI 254

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI----CACVVDMLGRAGQL 411
           KP+  ++  +++AC  +GL +        +I+ Y IK   +        +VDM  + G L
Sbjct: 255 KPNEFSLSSMVNAC--TGLRDSS---RGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDL 309

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSE--------MQDLAYKSLIQLEPEN 460
             A+   + +  +P    W A+++  V+H + E        M+   + SL++++ E+
Sbjct: 310 ADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMES 365



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 138/327 (42%), Gaps = 48/327 (14%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           +   T+   L+ +A  + + + +Q H   +  G  S+ +V   LI +Y  C     ++ +
Sbjct: 431 FNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERI 490

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F      D+  + S+I  Y +     EAL+LF  M    + PD F  +++      +   
Sbjct: 491 FEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAF 550

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
             G  +H   +K GFV+D+   NSL++MY KCG   +    F E+ +R + SW+  I G 
Sbjct: 551 EQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGL 610

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A                                  Q+G   +AL LF +M LK+ + PN 
Sbjct: 611 A----------------------------------QHGHGRQALQLFNQM-LKEGVSPNH 635

Query: 258 VSLVSVLPTCS-------SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           ++LVSVL  C+       + +     +++ GF   +E          +ID+  + G ++ 
Sbjct: 636 ITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHY------ACMIDLLGRAGKINE 689

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLH 337
           A  +     F  +A  W +++    +H
Sbjct: 690 AVELVNKMPFEANASVWGALLGAARIH 716



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 250 KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
           K    P  VS   +L  C +   L  G QIH    +  L+ D S+ N LI++YSKC    
Sbjct: 49  KGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFG 108

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            AR++ ++SS   D ++WS+++SGY  +G G  A++ +++M  LG K +  T   VL AC
Sbjct: 109 YARKLVDESS-EPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKAC 167

Query: 370 GRSGLINEGLEIYNSVI 386
                +  G +++  V+
Sbjct: 168 SIVKDLRIGKQVHGVVV 184



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 14/192 (7%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            L   A   + +  KQ H  IL  G + + F    L+  YA CG    +   F+ +  + 
Sbjct: 540 LLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERG 599

Query: 86  VYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATI------SKLSGEIKDLN 138
           +  ++++I G +  HGH  +AL+LF+ M    VSP+  TL ++      + L  E K   
Sbjct: 600 IVSWSAMIGG-LAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAK--- 655

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGH 197
             +    +    GF         ++ +  + GK +E + L ++MP + N   W   +   
Sbjct: 656 --LYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAA 713

Query: 198 ASSGDFSLVVRS 209
               D  L  R+
Sbjct: 714 RIHKDVELGRRA 725


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 169/480 (35%), Positives = 275/480 (57%), Gaps = 36/480 (7%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           + P V   L+  YA CG    ++ VF  I H DV L++ LI+ Y +++ + +A E+F  M
Sbjct: 284 TEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRM 343

Query: 113 YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
             S+V P++F+L+ + +    +  L++G  IH L IK+G+  ++ + N+LM +Y KC   
Sbjct: 344 MRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKC--- 400

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                       RN+ +                   S  +F  ++  N  +W  +I GY 
Sbjct: 401 ------------RNMEN-------------------SLEIFRSLRDANEVSWNTIIVGYC 429

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           Q+G  ++AL +F EM+    +   +V+  SVL  C++   +    QIH    +   N+D 
Sbjct: 430 QSGFAEDALSVFQEMRAA-HVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDT 488

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            +CN+LID Y+KCG +  A +VFE S    D ++W++I+SGY LHG+  +A+ L+N+M  
Sbjct: 489 IVCNSLIDTYAKCGCIRDALKVFE-SIIQCDVVSWNAIISGYALHGRATDALELFNRMNK 547

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
             +KP+ +T V +LS CG +GL+N+GL ++NS+   +RIKP+ +   C+V +LGRAG+L+
Sbjct: 548 SDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLN 607

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            AL FI  +P  PSP +W AL+S+ V+H N  +   + + ++++EP++ + YV LSN+YA
Sbjct: 608 DALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYA 667

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           ++   D VA LR  M++ G+KK  G SW+ I G+ H FSV    HP    I  ML+ L L
Sbjct: 668 AAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNL 727



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 202/426 (47%), Gaps = 43/426 (10%)

Query: 23  VQHF-----LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           V HF     L+V     +  LT   H+    LGH  N FV + LI AY+LCG  + ++ V
Sbjct: 148 VNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCV 207

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F+ I  KD   + ++++ Y +N    +AL  FS M  +   P+ F L ++ K +  +   
Sbjct: 208 FDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSA 267

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            +G  IHG ++K     +  +  +L+ MY KCG   +   +F+ +P  +V  W+  IS +
Sbjct: 268 VLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRY 327

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A S                                QN   ++A  +FL M ++  + PN+
Sbjct: 328 AQS-------------------------------YQN---EQAFEMFLRM-MRSSVVPNE 352

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            SL  VL  C+++  L  G+QIH   I+     ++ + NAL+D+Y+KC +++ +  +F  
Sbjct: 353 FSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFR- 411

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
           S  + + ++W++I+ GY   G   +A+ ++ +M         +T   VL AC  +  I  
Sbjct: 412 SLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKH 471

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
            ++I+ S+I        T +C  ++D   + G +  AL   +++ ++     W A++S  
Sbjct: 472 TVQIH-SLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGY 529

Query: 438 VMHGNS 443
            +HG +
Sbjct: 530 ALHGRA 535



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 163/369 (44%), Gaps = 38/369 (10%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS--NPFVSTKLITAYALCGQPTQSQLV 77
           S      LQ        +  +  H++++  G ++  + F +  L+  YA  G    ++ +
Sbjct: 47  SYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRL 106

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F+ +  +++  + +L+ GY    G  EA  LF  +       + F L TI K+   +   
Sbjct: 107 FDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAP 166

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            +   IH  + K+G   +  + +SL+  Y  CG  S    +FD +       W       
Sbjct: 167 GLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGI------IW------- 213

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                                ++   WTAM++ Y +N   ++AL  F +M++    +PN 
Sbjct: 214 ---------------------KDAVTWTAMVSCYSENDIPEDALNTFSKMRMAG-AKPNP 251

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
             L SVL     L     GK IHG A++   + +  +  AL+DMY+KCG ++ AR VFE 
Sbjct: 252 FVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEI 311

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
              + D I WS ++S Y    +  +A  ++ +M+     P+  ++ GVL AC     ++ 
Sbjct: 312 IPHD-DVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDL 370

Query: 378 GLEIYNSVI 386
           G +I+N VI
Sbjct: 371 GQQIHNLVI 379



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 7/234 (2%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           LQ  A    L L +Q H+ ++ LG+ S  FV   L+  YA C     S  +F S++  + 
Sbjct: 359 LQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANE 418

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N++I GY ++    +AL +F  M  ++V     T +++ +       +   + IH L
Sbjct: 419 VSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSL 478

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
             K  F  D I+ NSL+  Y KCG   + L +F+ + Q +V SWN  ISG+A  G     
Sbjct: 479 IEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGR---A 535

Query: 207 VRSRRVFDQMKRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
             +  +F++M +     N   + A+++     G +++ L LF  M +  RI+P+
Sbjct: 536 TDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPS 589



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 127/289 (43%), Gaps = 24/289 (8%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T    L+  A   S+K T Q HS I      ++  V   LI  YA CG    +  VF
Sbjct: 452 TQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVF 511

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            SI   DV  +N++I+GY  +    +ALELF+ M  S+  P+D T   +  + G     +
Sbjct: 512 ESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCG-----S 566

Query: 139 VGMLIHGLSIKIGFVVDVILANSL------MSMYVKCGKFSECLNLFDEMPQR-NVGSWN 191
            G++  GLS+     +D  +  S+      + +  + G+ ++ L    ++P   +   W 
Sbjct: 567 TGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWR 626

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
             +S      + +L   S     +++ ++   +  + N Y   G LD+  V  L   +++
Sbjct: 627 ALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQ--VALLRKSMRN 684

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
                +V L        S + + G  ++H F++    + D+ + NA+++
Sbjct: 685 IGVKKEVGL--------SWVEIKG--EVHAFSVGSADHPDMRIINAMLE 723


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 177/486 (36%), Positives = 275/486 (56%), Gaps = 39/486 (8%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T LIT YA  G    ++ VF+ I  +DV  +N++I GYV+N G+ EALELF  M  +NV 
Sbjct: 153 TALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVR 212

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGL-SIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
           PD+ TL ++     +   + +G  IH L     GF   + + N+ + +Y KCG       
Sbjct: 213 PDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCG------- 265

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
                        +V I+    SG          +F+ +  ++V +W  +I GY      
Sbjct: 266 -------------DVEIA----SG----------LFEGLSCKDVVSWNTLIGGYTHMNLY 298

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLC 295
            EAL+LF EM L+    PN V+++SVLP C+ L  +  G+ IH +  +  K + +  +L 
Sbjct: 299 KEALLLFQEM-LRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALR 357

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
            +LIDMY+KCG ++ A +VF +S  +K   +W++++ G+ +HG+ + A  L+++M   G 
Sbjct: 358 TSLIDMYAKCGDIEAAHQVF-NSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGI 416

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
           +PD IT+VG+LSAC  SGL++ G  I+ SV   Y I P  E   C++D+LG AG    A 
Sbjct: 417 EPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAE 476

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
           + I  MP+EP   IW +L+ A  MHGN E+ +   + L+++EPEN  +YV LSN+YA++ 
Sbjct: 477 EIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAG 536

Query: 476 RWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           RW+ VA +R ++  +G+KK PGCS I I    H F + DK HP S  IY ML+++ +++ 
Sbjct: 537 RWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLE 596

Query: 536 GAAASP 541
            A   P
Sbjct: 597 EAGFVP 602



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 127/413 (30%), Positives = 211/413 (51%), Gaps = 23/413 (5%)

Query: 42  SHSQILSLGHISNPFVSTKLITAYALC-------GQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +H+Q++  G  +  +  +KL+    LC       G P     VF + Q  ++ ++N+++ 
Sbjct: 1   THAQMVKTGLHNTNYALSKLLE---LCVVSPHFDGLPYAVS-VFETXQEPNLLIWNTMLR 56

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G   +      LE++  M      P+ +T   + K   + K    G  IH   +K+G  +
Sbjct: 57  GLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCEL 116

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D     SL+SMY + G+  +   +FD   QR+V S    I+G+AS GD   V  +R+VFD
Sbjct: 117 DRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGD---VRSARKVFD 173

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            +  R+V +W AMI GYV+N   +EAL LF EM ++  + P++ +LVSVL  C+    + 
Sbjct: 174 XITERDVVSWNAMITGYVENCGYEEALELFKEM-MRTNVRPDEGTLVSVLSACAQSGSIE 232

Query: 275 GGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
            G++IH            + + NA I +YSKCG ++ A  +FE  S  KD ++W++++ G
Sbjct: 233 LGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSC-KDVVSWNTLIGG 291

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y       EA+LL+ +M+  G  P+ +T++ VL AC   G I+ G  I+  V    R+K 
Sbjct: 292 YTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIH--VYIDKRLKG 349

Query: 394 TTEICA---CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            T   A    ++DM  + G ++ A     +M +  S S W A++    MHG +
Sbjct: 350 VTNGSALRTSLIDMYAKCGDIEAAHQVFNSM-MHKSLSSWNAMIFGFAMHGRA 401


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 173/483 (35%), Positives = 277/483 (57%), Gaps = 14/483 (2%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++ AYA  G+   +  +F+ +  +D   +N L+   V++   +EA  LF  M   NV   
Sbjct: 139 MLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMSW 198

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
              ++ +++ SG   +     L  G+  +     +V+  N+++S Y +  +  E L+LF 
Sbjct: 199 TTMISGLAR-SGSADEARA--LFDGMPER-----NVVSWNAMISGYARNLRIDEALDLFM 250

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            MP+R+V SWN+ I+G   + D     +++ +FD+M +RNV +WT M+NG +Q  + + A
Sbjct: 251 NMPERDVASWNIMITGFIQNKDLK---KAQELFDEMPKRNVVSWTTMMNGCLQGNESEMA 307

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L +F  M L D I PN+V+ +  +   S+L GLS G+Q+H    +     D  + ++L+ 
Sbjct: 308 LQVFNGM-LVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMK 366

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           +Y+KCG +  AR+VF D S  KD I+W+ +++ Y  HG G EA+ LY KM     KP+ +
Sbjct: 367 LYAKCGEIRLARKVF-DLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDV 425

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T VG+LSAC  SGL++EGL I+  +     I    E  +C++D+  RAG+LD A   I  
Sbjct: 426 TYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLING 485

Query: 421 MPVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
           + ++P+ S +W AL+     HGN  + DLA ++L++ EP+N   Y  LSN+YAS+ +W  
Sbjct: 486 LKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKE 545

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
            A++R+ M DRGLKK PGCSWI +  K H F   DK+H  S  IY +L D+  +MR   +
Sbjct: 546 AAKIRSEMNDRGLKKQPGCSWIELANKVHVFVARDKSHSESELIYSLLQDIHHMMRMDGS 605

Query: 540 SPH 542
            P 
Sbjct: 606 DPR 608



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 177/422 (41%), Gaps = 81/422 (19%)

Query: 48  SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
           +  H+ +P    + I   A  G+   ++ +F+    +DV  + +++  Y +    +EA  
Sbjct: 35  AFSHVQDP---NRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASA 91

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           L          PD                                  +V+   +L+S Y 
Sbjct: 92  LLHR-------PDARR-------------------------------NVVTWTALLSGYA 113

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD----------------------FSL 205
           +  +  E   LFD MP+RNV SWN  +  +AS+G                        + 
Sbjct: 114 RARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAA 173

Query: 206 VVRS------RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
           +VRS      RR+F++M  RNV +WT MI+G  ++G  DEA  LF  M      E N VS
Sbjct: 174 LVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMP-----ERNVVS 228

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
             +++   +  + +   + +  F    E   DV+  N +I  + +   L  A+ +F D  
Sbjct: 229 WNAMISGYARNLRID--EALDLFMNMPE--RDVASWNIMITGFIQNKDLKKAQELF-DEM 283

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             ++ ++W+++++G     +   A+ ++N M+  G +P+ +T +G + A      ++EG 
Sbjct: 284 PKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQ 343

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           +++  +  T   +    I + ++ +  + G++ R    +  +  E     W  +++A   
Sbjct: 344 QVHQMICKT-PFQFDNFIESSLMKLYAKCGEI-RLARKVFDLSGEKDVISWNGMIAAYAH 401

Query: 440 HG 441
           HG
Sbjct: 402 HG 403



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 132/289 (45%), Gaps = 28/289 (9%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N  ++     G+  +   LFD  P R+V SW   ++ +A  G   L   S  +     RR
Sbjct: 43  NRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQG--QLHEASALLHRPDARR 100

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV  WTA+++GY +   +DEA  LF  M      E N VS  ++L   +S   +     +
Sbjct: 101 NVVTWTALLSGYARARRVDEARALFDRMP-----ERNVVSWNTMLEAYASAGRMGAACAL 155

Query: 280 -HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
             G  +R     D    N L+    + G++D ARR+FE     ++ ++W++++SG    G
Sbjct: 156 FDGMPVR-----DAGSWNILLAALVRSGTMDEARRLFERMP-ERNVMSWTTMISGLARSG 209

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              EA  L++ M     + ++++   ++S   R+  I+E L+++ ++       P  ++ 
Sbjct: 210 SADEARALFDGM----PERNVVSWNAMISGYARNLRIDEALDLFMNM-------PERDVA 258

Query: 399 ACVVDMLG--RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           +  + + G  +   L +A +    MP     S W  +++  +    SEM
Sbjct: 259 SWNIMITGFIQNKDLKKAQELFDEMPKRNVVS-WTTMMNGCLQGNESEM 306



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 15/217 (6%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H  I       + F+ + L+  YA CG+   ++ VF+    KDV  +N +I  Y  +
Sbjct: 343 QQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHH 402

Query: 100 HGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
               EA+ L+  M  +   P+D T +  +S  S      + G++  GL I      D  +
Sbjct: 403 GAGVEAIALYEKMQENRYKPNDVTYVGLLSACS------HSGLVDEGLRIFEYMAKDKSI 456

Query: 159 A------NSLMSMYVKCGKFSECLNLFDEMPQRNVGS--WNVRISGHASSGDFSLVVRSR 210
           A      + L+ +  + G+  +   L + +  +   S  W+  + G  + G+ S+   + 
Sbjct: 457 AVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLAA 516

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
           R   + +  N   +T + N Y   G   EA  +  EM
Sbjct: 517 RNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEM 553


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 185/520 (35%), Positives = 276/520 (53%), Gaps = 39/520 (7%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE-ALELFSN 111
           +N   S KLI +Y  CG    +  VF  ++ K    +NS++  + K  GH E A +LF  
Sbjct: 39  NNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEK 98

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           +   N    +  LA      G + D         + +K     DV   N+++S   + G 
Sbjct: 99  IPQPNTVSYNIMLACHWHHLG-VHDAR--GFFDSMPLK-----DVASWNTMISALAQVGL 150

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGD----------------------------F 203
             E   LF  MP++N  SW+  +SG+ + GD                            F
Sbjct: 151 MGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKF 210

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
             V  + R+F +M  R +  W AMI GYV+NG  ++ L LF  M L+  ++PN +SL SV
Sbjct: 211 GRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTM-LETGVKPNALSLTSV 269

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           L  CS+L  L  GKQ+H    +  L+ D +   +L+ MYSKCG L  A  +F      KD
Sbjct: 270 LLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP-RKD 328

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            + W++++SGY  HG G +A+ L+++M   G KPD IT V VL AC  +GL++ G++ +N
Sbjct: 329 VVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFN 388

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           ++   + I+   E  AC+VD+LGRAG+L  A+D IK+MP +P P+I+G L+ A  +H N 
Sbjct: 389 TMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNL 448

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
            + + A K+L++L+P   + YV L+N+YA+  RWD VA +R  MKD  + K PG SWI I
Sbjct: 449 NLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEI 508

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           +   H F  +D+ HP   SI+E L DL   M+ A   P L
Sbjct: 509 NSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDL 548



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+L KQ H  +      S+    T L++ Y+ CG    +  +F  I  KDV  +N++I+
Sbjct: 278 ALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMIS 337

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFV 153
           GY ++    +AL LF  M    + PD  T   +         +++G+   + +    G  
Sbjct: 338 GYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIE 397

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMP 183
                   ++ +  + GK SE ++L   MP
Sbjct: 398 TKPEHYACMVDLLGRAGKLSEAVDLIKSMP 427



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH-GKGHEAVLLY 347
           N++V   N LI  Y +CG +D A RVFED    K  +TW+SI++ +    G    A  L+
Sbjct: 38  NNNVIASNKLIASYVRCGDIDSAVRVFEDMKV-KSTVTWNSILAAFAKKPGHFEYARQLF 96

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGL-INEGLEIYNSVINTYRIKPTTEICA--CVVDM 404
            K+     +P+ ++   ++ AC    L +++    ++S+       P  ++ +   ++  
Sbjct: 97  EKI----PQPNTVS-YNIMLACHWHHLGVHDARGFFDSM-------PLKDVASWNTMISA 144

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           L + G +  A      MP E +   W A+VS  V  G+
Sbjct: 145 LAQVGLMGEARRLFSAMP-EKNCVSWSAMVSGYVACGD 181


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 178/526 (33%), Positives = 284/526 (53%), Gaps = 38/526 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T   FL       SLK  K+ H  IL  G   + F+ + LI  Y  C     +  +F 
Sbjct: 174 SITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFK 233

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
              + D+ +  ++I+GYV N  +N+ALE+F  +    +SP+  TLA++      +  LN+
Sbjct: 234 QSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNL 293

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +H   +K G      + +++M MY KCG+      +F  MP++              
Sbjct: 294 GKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-------------- 339

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                               +   W A+I    QNG   EA+ LF +M  ++ +  + VS
Sbjct: 340 --------------------DAVCWNAIITNCSQNGKPQEAIDLFRQMG-REGLSYDCVS 378

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           + + L  C++L  L  GK IH F I+   + +V   +ALIDMY KCG+L  AR VF D  
Sbjct: 379 ISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVF-DMM 437

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             K+ ++W+SI++ YG HG    ++ L++KM+  G +PD +T + +LSACG +G +++G+
Sbjct: 438 REKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGI 497

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           + +  +   Y I    E  AC+VD+ GRAG+L+ A + IK MP  P   +WG L+ A  +
Sbjct: 498 QYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRV 557

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           HGN E+ ++A + L+ L+PEN   YV LSN++A + +W +V ++R++MK RG++K PG S
Sbjct: 558 HGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYS 617

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR--GAAASPHL 543
           WI ++  TH F  AD +HP S  IY +L++L+L +R  G    P+L
Sbjct: 618 WIEVNKTTHMFVAADGSHPESAQIYSVLNNLLLELRKEGYCPKPYL 663



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 202/396 (51%), Gaps = 38/396 (9%)

Query: 49  LGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALEL 108
           +G   + FV + LI  YA  G    ++ +F+ + +KD  L+N ++NG+VK    N A+++
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           F +M      P+  T A++  +         G  +HGL I  GF  D ++AN+L++MY K
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
            G+ S+ L LF+ MP                                    NV  W  MI
Sbjct: 121 FGQLSDALKLFNTMPDT----------------------------------NVVTWNGMI 146

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288
            G+VQNG +DEA +LF EM +   + P+ ++  S LP+ +    L  GK+IHG+ +R  +
Sbjct: 147 AGFVQNGFMDEASLLFSEM-ISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGI 205

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
             DV L +ALID+Y KC  +  A ++F+ S+ N D +  ++I+SGY L+G  ++A+ ++ 
Sbjct: 206 ALDVFLKSALIDIYFKCRDVGMACKIFKQST-NVDIVVCTAIISGYVLNGLNNDALEIFR 264

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
            ++     P+ +T+  VL AC     +N G E++ +++  + +     + + ++DM  + 
Sbjct: 265 WLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILK-HGLDERRHVGSAIMDMYAKC 323

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           G+LD A    + MP E     W A+++    +G  +
Sbjct: 324 GRLDLAYQIFRRMP-EKDAVCWNAIITNCSQNGKPQ 358



 Score =  188 bits (477), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 237/479 (49%), Gaps = 48/479 (10%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L + A+    +   Q H  ++S G   +P V+  L+  Y+  GQ + +  +FN
Sbjct: 73  SITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFN 132

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           ++   +V  +N +I G+V+N   +EA  LFS M  + VSPD  T A+      E   L  
Sbjct: 133 TMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQ 192

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IHG  ++ G  +DV L ++L+ +Y KC               R+VG           
Sbjct: 193 GKEIHGYILRHGIALDVFLKSALIDIYFKC---------------RDVG----------- 226

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    + ++F Q    ++   TA+I+GYV NG  ++AL +F  + L++++ PN V+
Sbjct: 227 --------MACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWL-LEEKMSPNAVT 277

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           L SVLP C+ L  L+ GK++H   ++  L+    + +A++DMY+KCG LD A ++F    
Sbjct: 278 LASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMP 337

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             KDA+ W++I++    +GK  EA+ L+ +M   G   D ++I   LSAC     ++ G 
Sbjct: 338 -EKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHG- 395

Query: 380 EIYNSVINTYRIKPT--TEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
                 I+++ IK    +E+ A   ++DM G+ G L  A      M  E +   W ++++
Sbjct: 396 ----KAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMR-EKNEVSWNSIIA 450

Query: 436 ASVMHGNSEMQDLAYKSLIQ--LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
           A   HG+ E+    +  +++  ++P++ +    LS    + +    +   R M ++ G+
Sbjct: 451 AYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGI 509



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           +Y   ++   L   A   +L   K  HS ++     S  F  + LI  Y  CG  + ++ 
Sbjct: 373 SYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARC 432

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
           VF+ ++ K+   +NS+I  Y  +HGH E +L LF  M    + PD  T  TI    G   
Sbjct: 433 VFDMMREKNEVSWNSIIAAY-GSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAG 491

Query: 136 DLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVR 193
            ++ G+     ++ + G    +     ++ ++ + G+ +E       MP   + G W   
Sbjct: 492 QVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTL 551

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
           +      G+  L   + R    +   N   +  + N +   G
Sbjct: 552 LGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAG 593


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 172/505 (34%), Positives = 284/505 (56%), Gaps = 36/505 (7%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           +L +Q HS ++ +   S+ FVS  L+  Y+ C     +++ FN +  KD+  +N++I+GY
Sbjct: 376 ELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 435

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            +     EAL LF  M+   +  +  TL+TI K +  ++ ++V   +HGLS+K GF  D+
Sbjct: 436 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDI 495

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            + NSL+  Y KC                                  S V  + R+F++ 
Sbjct: 496 YVVNSLIDSYGKC----------------------------------SHVEDAERIFEEC 521

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
              ++ ++T+MI  Y Q G  +EAL LFLEMQ  + ++P++    S+L  C++L     G
Sbjct: 522 TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDME-LKPDRFVCSSLLNACANLSAFEQG 580

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           KQ+H   ++     D+   N+L++MY+KCGS+D A R F + +  +  ++WS+++ G   
Sbjct: 581 KQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT-ERGIVSWSAMIGGLAQ 639

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG G +A+ L+N+M+  G  P+ IT+V VL AC  +GL+ E    + S+   +  KP  E
Sbjct: 640 HGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQE 699

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             AC++D+LGRAG+++ A++ +  MP E + S+WGAL+ A+ +H + E+   A + L  L
Sbjct: 700 HYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFIL 759

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           EPE    +V L+N+YAS+ +W+ VAE+R +M+D  +KK PG SWI +  K + F V D++
Sbjct: 760 EPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRS 819

Query: 517 HPCSVSIYEMLDDLILIMRGAAASP 541
           H  S  IY  LD+L  +M  A   P
Sbjct: 820 HYRSQEIYAKLDELSDLMDKAGYVP 844



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 207/427 (48%), Gaps = 40/427 (9%)

Query: 12  LVTSRNYTSATVQH--FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCG 69
           L+   N+T  +V +   L    T +SL+   Q H+ I   G   +P +   LI  Y+ C 
Sbjct: 46  LIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCR 105

Query: 70  QPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK 129
               ++ + +     D+  +++LI+GY +N     AL  F  M+   V  ++FT +++ K
Sbjct: 106 NFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLK 165

Query: 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189
               +KDL +G  +HG+ +  GF  DV +AN+L+ MY KC +F                 
Sbjct: 166 ACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF----------------- 208

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
                            + S+R+FD++  RNV +W A+ + YVQ     EA+ LF EM L
Sbjct: 209 -----------------LDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVL 251

Query: 250 KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
              I+PN+ SL S++  C+ L   S GK IHG+ I+   + D    NAL+DMY+K G L 
Sbjct: 252 SG-IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLA 310

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            A  VFE      D ++W+++++G  LH    +A+ L  +M   G  P+I T+   L AC
Sbjct: 311 DAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKAC 369

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
              GL   G ++++S++    ++    +   +VDM  +   L+ A      +P E     
Sbjct: 370 AGMGLKELGRQLHSSLMKM-DMESDLFVSVGLVDMYSKCDLLEDARMAFNLLP-EKDLIA 427

Query: 430 WGALVSA 436
           W A++S 
Sbjct: 428 WNAIISG 434



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 46/333 (13%)

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
           N +P   + + +       K L  G+ IH    K G   D  + N L+++Y KC      
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKC------ 104

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
                    RN G                    +R++ D+    ++ +W+A+I+GY QNG
Sbjct: 105 ---------RNFG-------------------YARKLVDESSEPDLVSWSALISGYAQNG 136

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
               AL+ F EM L   ++ N+ +  SVL  CS +  L  GKQ+HG  +      DV + 
Sbjct: 137 LGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVA 195

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           N L+ MY+KC     ++R+F++    ++ ++W+++ S Y       EAV L+ +MV  G 
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIP-ERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGI 254

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI----CACVVDMLGRAGQL 411
           KP+  ++  +++AC  +GL +        +I+ Y IK   +        +VDM  + G L
Sbjct: 255 KPNEFSLSSMVNAC--TGLRDSS---RGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDL 309

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
             A+   + +  +P    W A+++  V+H + E
Sbjct: 310 ADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHE 341



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 138/327 (42%), Gaps = 48/327 (14%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           +   T+   L+ +A  + + + +Q H   +  G  S+ +V   LI +Y  C     ++ +
Sbjct: 458 FNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERI 517

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F      D+  + S+I  Y +     EAL+LF  M    + PD F  +++      +   
Sbjct: 518 FEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAF 577

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
             G  +H   +K GFV+D+   NSL++MY KCG   +    F E+ +R + SW+  I G 
Sbjct: 578 EQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGL 637

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A                                  Q+G   +AL LF +M LK+ + PN 
Sbjct: 638 A----------------------------------QHGHGRQALQLFNQM-LKEGVSPNH 662

Query: 258 VSLVSVLPTCS-------SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           ++LVSVL  C+       + +     +++ GF   +E          +ID+  + G ++ 
Sbjct: 663 ITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHY------ACMIDLLGRAGKINE 716

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLH 337
           A  +     F  +A  W +++    +H
Sbjct: 717 AVELVNKMPFEANASVWGALLGAARIH 743


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 270/456 (59%), Gaps = 12/456 (2%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           YN++I+GYV    + EALE+   M  S +  D+FT  ++ +     + L +G  +H   +
Sbjct: 254 YNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVL 313

Query: 149 K---IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
           +     F  D    NSL+++Y KCGKF+E   +F++MP +++ SWN  +SG+ SSG    
Sbjct: 314 RREDFSFHFD----NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGH--- 366

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           +  ++ +F +MK +N+ +W  MI+G  +NG  +E L LF  M+ ++  EP   +    + 
Sbjct: 367 IGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK-REGFEPCDYAFSGAIK 425

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
           +C+ L     G+Q H   ++   +  +S  NALI MY+KCG ++ A++VF       D++
Sbjct: 426 SCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMP-CLDSV 484

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W+++++  G HG G EAV +Y +M+  G +PD IT + VL+AC  +GL+++G + +NS+
Sbjct: 485 SWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSM 544

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
              YRI P  +  A ++D+L R+G+   A   I+++P +P+  IW AL+S   +HGN E+
Sbjct: 545 ETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMEL 604

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
             +A   L  L PE+   Y+ LSN+YA++ +W+ VA +R +M+DRG+KK   CSWI +  
Sbjct: 605 GIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMET 664

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           + H F V D +HP + ++Y+ L DL   MR     P
Sbjct: 665 QVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVP 700



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 213/448 (47%), Gaps = 53/448 (11%)

Query: 51  HISNP--FVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYVKNHGHNEAL 106
            IS P     T +++ Y   G    ++ VF    +  +D  +YN++I G+  N+    A+
Sbjct: 74  EISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAI 133

Query: 107 ELFSNMYYSNVSPDDFTLATI-SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
            LF  M +    PDDFT A++ + L+  + D    +  H  ++K G      ++N+L+S+
Sbjct: 134 NLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSV 193

Query: 166 YVKCGKFSECLN----LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           Y +C      L+    +FD++P+++  SW   ++G+  +G F L     +  D+  +  +
Sbjct: 194 YSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMK--L 251

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            A+ AMI+GYV  G   EAL +   M +   IE ++ +  SV+  C++   L  GKQ+H 
Sbjct: 252 VAYNAMISGYVNCGLYQEALEMVRRM-VSSGIELDEFTYPSVIRACANARLLQLGKQVHA 310

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           + +R+E +      N+L+ +Y KCG  + AR +FE     KD ++W++++SGY   G   
Sbjct: 311 YVLRRE-DFSFHFDNSLVTLYYKCGKFNEARAIFEKMP-AKDLVSWNALLSGYVSSGHIG 368

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT------YRIKPTT 395
           EA L++ +M     + +I++ + ++S    +G   EGL++++ +         Y      
Sbjct: 369 EAKLIFKEM----KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAI 424

Query: 396 EICA----------------------------CVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           + CA                             ++ M  + G ++ A    +TMP   S 
Sbjct: 425 KSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSV 484

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           S W AL++A   HG+       Y+ +++
Sbjct: 485 S-WNALIAALGQHGHGVEAVDVYEEMLK 511



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 161/356 (45%), Gaps = 47/356 (13%)

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L +   +HG  I  GF     + N L+ +Y K  +      LFDE+ + +  +    +SG
Sbjct: 30  LQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSG 89

Query: 197 HASSGDFSLVVRSRRVFDQ--MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           + +SGD +L   +R VF++  +  R+   + AMI G+  N D   A+ LF +M+  +  +
Sbjct: 90  YCASGDIAL---ARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMK-HEGFK 145

Query: 255 PNKVSLVSVLPTCSSLIGLSGG-KQIHGFAIRKELNHDVSLCNALIDMYSKCGS----LD 309
           P+  +  SVL   + ++       Q H  A++    +  S+ NAL+ +YS+C S    L 
Sbjct: 146 PDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLH 205

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHG---------KG-------------------- 340
            AR+VF+D    KD  +W+++++GY  +G         KG                    
Sbjct: 206 SARKVFDDIP-EKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNC 264

Query: 341 ---HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
               EA+ +  +MV  G + D  T   V+ AC  + L+  G +++  V+   R   +   
Sbjct: 265 GLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLR--REDFSFHF 322

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
              +V +  + G+ + A    + MP +   S W AL+S  V  G+     L +K +
Sbjct: 323 DNSLVTLYYKCGKFNEARAIFEKMPAKDLVS-WNALLSGYVSSGHIGEAKLIFKEM 377



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 8/217 (3%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H+Q++ +G  S+      LIT YA CG   ++Q VF ++   D   +N+LI   +  
Sbjct: 437 QQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAA-LGQ 495

Query: 100 HGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFVVDVI 157
           HGH  EA++++  M    + PD  T  T+         ++ G    + +           
Sbjct: 496 HGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGAD 555

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISGHASSGDFSL-VVRSRRVFDQ 215
               L+ +  + GKFSE  ++ + +P +     W   +SG    G+  L ++ + ++F  
Sbjct: 556 HYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGL 615

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
           +   +   +  + N Y   G  +E  V  +   ++DR
Sbjct: 616 IPEHDG-TYMLLSNMYAATGQWEE--VARVRKLMRDR 649


>gi|15228117|ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37310
 gi|4056485|gb|AAC98051.1| hypothetical protein [Arabidopsis thaliana]
 gi|110741249|dbj|BAF02175.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254288|gb|AEC09382.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 169/498 (33%), Positives = 282/498 (56%), Gaps = 6/498 (1%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L +Q H  ++  G  S+ FV   +IT Y  C     ++ VF+ +  +DV  +NS+I+GY 
Sbjct: 150 LARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYS 209

Query: 98  KNHGHNEALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           ++    +  +++  M   S+  P+  T+ ++ +  G+  DL  G+ +H   I+    +D+
Sbjct: 210 QSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDL 269

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            L N+++  Y KCG       LFDEM +++  ++   ISG+ + G   LV  +  +F +M
Sbjct: 270 SLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHG---LVKEAMALFSEM 326

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           +   +  W AMI+G +QN   +E +  F EM ++    PN V+L S+LP+ +    L GG
Sbjct: 327 ESIGLSTWNAMISGLMQNNHHEEVINSFREM-IRCGSRPNTVTLSSLLPSLTYSSNLKGG 385

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K+IH FAIR   ++++ +  ++ID Y+K G L  A+RVF D+  ++  I W++I++ Y +
Sbjct: 386 KEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVF-DNCKDRSLIAWTAIITAYAV 444

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG    A  L+++M CLG+KPD +T+  VLSA   SG  +    I++S++  Y I+P  E
Sbjct: 445 HGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVE 504

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             AC+V +L RAG+L  A++FI  MP++P   +WGAL++ + + G+ E+   A   L ++
Sbjct: 505 HYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEM 564

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           EPEN  NY  ++NLY  + RW+    +R  MK  GLKK PG SWI        F   D +
Sbjct: 565 EPENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIAKDSS 624

Query: 517 HPCSVSIYEMLDDLILIM 534
              S  +YE+++ L+  M
Sbjct: 625 CERSKEMYEIIEGLVESM 642



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 207/463 (44%), Gaps = 83/463 (17%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H +Q    HR      Q H++I+      + F+++KLI+ Y    +  Q+  VF+ I  +
Sbjct: 27  HLIQHFTRHRLPLHVLQLHARIVVFSIKPDNFLASKLISFYTRQDRFRQALHVFDEITVR 86

Query: 85  DVYLYNSLINGYVKNHGHNEALELF-----SNMYYSNVS-PDDFTLATISKLSGEIKDLN 138
           + + YN+L+  Y     + +A  LF     S+ Y S+ + PD  +++ + K      D  
Sbjct: 87  NAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFW 146

Query: 139 VGML---IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           +G L   +HG  I+ GF  DV + N +++ Y KC        +FDEM +R+V SWN  IS
Sbjct: 147 LGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMIS 206

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
           G++ SG F                                  ++   ++  M      +P
Sbjct: 207 GYSQSGSF----------------------------------EDCKKMYKAMLACSDFKP 232

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N V+++SV   C     L  G ++H   I   +  D+SLCNA+I  Y+KCGSLD AR +F
Sbjct: 233 NGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALF 292

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL---------------------- 353
           ++ S  KD++T+ +I+SGY  HG   EA+ L+++M  +                      
Sbjct: 293 DEMS-EKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVI 351

Query: 354 ---------GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
                    GS+P+ +T+  +L +   S  +  G EI+   I          +   ++D 
Sbjct: 352 NSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRN-GADNNIYVTTSIIDN 410

Query: 405 LGRAGQL---DRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
             + G L    R  D  K    + S   W A+++A  +HG+S+
Sbjct: 411 YAKLGFLLGAQRVFDNCK----DRSLIAWTAIITAYAVHGDSD 449


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 182/584 (31%), Positives = 303/584 (51%), Gaps = 69/584 (11%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           + L+V   +  L+  K+ H Q++  G  SN F  T ++  YA C    ++  +F+ +  +
Sbjct: 180 YLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPER 239

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D+  +N++I+GY +N     ALEL   M      PD  T+ +I     ++  L +G  IH
Sbjct: 240 DLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIH 299

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFS------------------------------- 173
           G S++ GF   V ++ +L+ MY KCG                                  
Sbjct: 300 GYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPG 359

Query: 174 ECLNLFDEMPQRNVGSWNVRISG--HASS--GD--------------------------F 203
             + +F +M    V   NV + G  HA +  GD                           
Sbjct: 360 AAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLI 419

Query: 204 SLVVRSRRV------FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           S+  + +RV      F+ ++ + + +W AMI GY QNG ++EA+  F +MQL++ I+P+ 
Sbjct: 420 SMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQN-IKPDS 478

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            ++VSV+P  + L  L   K IHG  IR  L+ +V +  AL+DMY+KCG++  AR++F D
Sbjct: 479 FTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLF-D 537

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               +   TW++++ GYG HG G  A+ L+ KM     KP+ +T + VLSAC  SGL+ E
Sbjct: 538 MMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEE 597

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G + + S+   Y ++P  +    +VD+LGRA +L+ A DFI+ MP+EP+ S++GA++ A 
Sbjct: 598 GFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGAC 657

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
            +H N E+ + A   +  L+P++   +V L+N+YA++  WD VA +RT M+ +G++K+PG
Sbjct: 658 RIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPG 717

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            S + +  + H F     +HP +  IY  L+ L   ++ A   P
Sbjct: 718 WSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMP 761



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 214/471 (45%), Gaps = 57/471 (12%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           S+K   Q    I+  G  S     TKL++ +   G   ++  VF  I+ K   LY++++ 
Sbjct: 89  SMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLK 148

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY +N   ++A+  F  M Y  V P  +    + K+ G+  DL  G  IH   I  GF  
Sbjct: 149 GYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFAS 208

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +V     +++MY KC    E   +FD MP+R++  WN  IS                   
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIIS------------------- 249

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                          GY QNG    AL L L MQ + +  P+ +++VS+LP  + +  L 
Sbjct: 250 ---------------GYAQNGFGKTALELVLRMQEEGK-RPDSITIVSILPAVADVGSLR 293

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+ IHG+++R      V++  AL+DMYSKCGS+  AR +F D    K  ++W+S++ GY
Sbjct: 294 IGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIF-DRMTGKTVVSWNSMIDGY 352

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G    A+ ++ KM+    +   +T++G L AC   G + +G    + +++   +   
Sbjct: 353 VQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG-RFVHKLLDQLELGSD 411

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
             +   ++ M  +  ++D A +  + +  +   S W A++     +G    + + Y   +
Sbjct: 412 VSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVS-WNAMILGYAQNGRIN-EAIDYFCKM 469

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
           QL+   P ++  +S +        A+AEL  +         P   W  IHG
Sbjct: 470 QLQNIKPDSFTMVSVI-------PALAELSVL---------PQAKW--IHG 502



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 7/241 (2%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T+ TV   L   A    ++  +  H  +  L   S+  V   LI+ Y+ C +   +  +F
Sbjct: 376 TNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIF 435

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            ++QHK +  +N++I GY +N   NEA++ F  M   N+ PD FT+ ++     E+  L 
Sbjct: 436 ENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLP 495

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
               IHGL I+     +V +A +L+ MY KCG       LFD M +R+V +WN  I G+ 
Sbjct: 496 QAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYG 555

Query: 199 SSGDFSLVVRSRRVFDQMKRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           + G   L   +  +F++MK+     N   +  +++    +G ++E    F  M+    +E
Sbjct: 556 THG---LGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLE 612

Query: 255 P 255
           P
Sbjct: 613 P 613



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 14/183 (7%)

Query: 263 VLPTCSSLIGLSGGKQIHGFA---IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +L  C+S+      K++H F    I+  L  +      L+ ++ K GSL  A RVF+   
Sbjct: 83  LLELCTSM------KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIE 136

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
              D + + +++ GY  +    +AV  + +M   G +P +     +L  CG +  + +G 
Sbjct: 137 DKIDEL-YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGK 195

Query: 380 EIY-NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           EI+   ++N +           VV+M  +   ++ A      MP E     W  ++S   
Sbjct: 196 EIHCQLIVNGF--ASNVFAMTGVVNMYAKCRLVEEAYKMFDRMP-ERDLVCWNTIISGYA 252

Query: 439 MHG 441
            +G
Sbjct: 253 QNG 255


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 176/519 (33%), Positives = 281/519 (54%), Gaps = 36/519 (6%)

Query: 17   NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
             +T A+V              L  Q H   +  G I++ FVST LI  Y+  G+  +++ 
Sbjct: 995  QFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEF 1054

Query: 77   VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
            + +     D+  +N+++ GY+K++   +ALE FS M+   +  D+ TLAT  K SG + +
Sbjct: 1055 LLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLIN 1114

Query: 137  LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
            L  G  I   +IK+GF  D+ +++ ++ MY+KCG     L LF E+              
Sbjct: 1115 LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEI-------------- 1160

Query: 197  HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                 R +  AWT MI+GY++NGD D AL ++  M++   ++P+
Sbjct: 1161 --------------------SRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSG-VQPD 1199

Query: 257  KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            + +  +++   S L  L  GKQIH   ++ + + D  +  +L+DMY KCGS+  A RVF 
Sbjct: 1200 EYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFR 1259

Query: 317  DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
                 K  + W++++ G   HG   EA+ L+  M   G +PD +T +GVLSAC  SGL +
Sbjct: 1260 KMDVRK-VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFS 1318

Query: 377  EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            E  + ++++  TY I P  E  +C+VD LGRAG++  A + I +MP + S S++ AL+ A
Sbjct: 1319 EAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGA 1378

Query: 437  SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
                G++E        L+ L+P + S YV LSN+YA+SR+WD V + R MMK + +KK P
Sbjct: 1379 CRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDP 1438

Query: 497  GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            G SWI +  K H F V D++HP +  IYE ++DL+  +R
Sbjct: 1439 GFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIR 1477



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 210/450 (46%), Gaps = 56/450 (12%)

Query: 36   LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
            LKL K++H++I++ G + + +++  LIT Y+ CG    ++ VF+    +D+  +NS++  
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 96   YVKNHGHN-----EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
            Y +    +     E   LF  +     S    TLA + KL      + V   +HG ++KI
Sbjct: 687  YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 151  GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD-------F 203
            GF +D+ ++ +L+++Y K G   +   LFD+MP+R+   WNV +  +  +         F
Sbjct: 747  GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 204  SLVVRS------------------------RRVFDQMKR-----------RNVYAWTAMI 228
            S   RS                        +R  +Q+K             N++AW   +
Sbjct: 807  SAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKL 866

Query: 229  NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288
              ++  G +  A+  F  + L+  I  + V+LV +L        L  G+QIH   I+   
Sbjct: 867  TEFLHAGQIVAAIDCFKTL-LRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSF 925

Query: 289  NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
               V + N+L++MYSK G +  A + F +S    D I+W++++S Y  +    EA+  + 
Sbjct: 926  APVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLISWNTMISSYAQNNLEMEAICTFR 984

Query: 349  KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK----PTTEICACVVDM 404
             ++  G KPD  T+  VL AC  +G   E   +  S ++ Y IK      + +   ++D+
Sbjct: 985  DLLRDGLKPDQFTLASVLRACS-TGDEGEYFTL-GSQVHVYAIKCGIINDSFVSTALIDL 1042

Query: 405  LGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
              + G++D A +F+     +   + W A++
Sbjct: 1043 YSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 218/502 (43%), Gaps = 75/502 (14%)

Query: 26   FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            F+QVS T          H   + +G   + FVS  L+  Y   G   Q++L+F+ +  +D
Sbjct: 732  FVQVSET---------VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERD 782

Query: 86   VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
              L+N ++  YV+N   +EAL  FS  + S   PD   L  +  + G   D++     H 
Sbjct: 783  AVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCV--IGGVNSDVSNNRKRHA 840

Query: 146  LSIKI----GFVVD----VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR---- 193
              +K      F  D    +   N  ++ ++  G+    ++ F  + +  +G  +V     
Sbjct: 841  EQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVII 900

Query: 194  ISGHASSGDF-------SLVVRS-------------------------RRVFDQMKRRNV 221
            +S    + D        +LV++S                          + F      ++
Sbjct: 901  LSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDL 960

Query: 222  YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG-----G 276
             +W  MI+ Y QN    EA+  F ++ L+D ++P++ +L SVL  CS+  G  G     G
Sbjct: 961  ISWNTMISSYAQNNLEMEAICTFRDL-LRDGLKPDQFTLASVLRACST--GDEGEYFTLG 1017

Query: 277  KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
             Q+H +AI+  + +D  +  ALID+YSK G +D A  +     ++ D  +W++I+ GY  
Sbjct: 1018 SQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH-GKYDFDLASWNAIMFGYIK 1076

Query: 337  HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
              K  +A+  ++ M  +G   D IT+   + A G    + +G +     I  Y IK    
Sbjct: 1077 SNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ-----IQAYAIKLGFN 1131

Query: 397  ----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
                + + V+DM  + G +  AL+    +   P    W  ++S  + +G+ E   L+   
Sbjct: 1132 NDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISGYIENGD-EDHALSVYH 1189

Query: 453  LIQLEPENPSNYVSLSNLYASS 474
            L+++    P  Y   + + ASS
Sbjct: 1190 LMRVSGVQPDEYTFATLIKASS 1211



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 94/228 (41%), Gaps = 35/228 (15%)

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           + DL +G   H   +  G + D  L N+L++MY KCG       +FD+   R++ +WN  
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 194 ISGHASSGDFSL--VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
           ++ +A   D S   V+   R+F  + R   ++ T +    +    L    V   E     
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLL-REFGFSITRLTLAPLLKLCLLSGFVQVSET---- 738

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
                                      +HG+A++     D+ +  AL+++Y K G +  A
Sbjct: 739 ---------------------------VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           R +F D    +DA+ W+ ++  Y  +    EA+  ++     G  PD 
Sbjct: 772 RLLF-DKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDF 818



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 19/192 (9%)

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           ++  L  GK+ H   +      D  L N LI MYSKCGSL  AR+VF+ SS ++D +TW+
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSS-DRDLVTWN 681

Query: 329 SIVSGYG-LHGKGHEAVL----LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
           SI++ Y       +E VL    L+  +   G     +T+  +L  C  SG +       +
Sbjct: 682 SILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQ-----VS 736

Query: 384 SVINTYRIKPTTE----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             ++ Y +K   E    +   +V++  + G + +A      MP E    +W  ++ A V 
Sbjct: 737 ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKAYV- 794

Query: 440 HGNSEMQDLAYK 451
              +  QD A +
Sbjct: 795 --ENSFQDEALR 804


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 195/548 (35%), Positives = 305/548 (55%), Gaps = 34/548 (6%)

Query: 2   ILSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQ-SHSQILSLGHISNPFVS 58
           ++S AR  F  +  RN  S  A V+ ++Q      +  L  Q     ++S   +    + 
Sbjct: 93  MVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQ 152

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
            + I          +++ +F+ +  KDV    ++I+GY +     EA ELF  M   NV 
Sbjct: 153 VRRID---------EARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNV- 202

Query: 119 PDDFTLATISKLSGEIKDLNVGM---LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
                ++  + +SG +++  V +   L   +  K     + +   +++  Y + G+  E 
Sbjct: 203 -----ISWTTMISGYVQNGQVDVARKLFEVMPEK-----NEVSWTAMLMGYTQGGRIEEA 252

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
             LFD MP + V + N  I G   +G+   V ++R+VFDQ++ ++   W+AMI  Y + G
Sbjct: 253 SELFDAMPVKAVVACNAMILGFGQNGE---VAKARQVFDQIREKDDGTWSAMIKVYERKG 309

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
              EAL LF  MQ ++ ++ N  SL+SVL  C+SL  L  G+Q+H   ++ + + DV + 
Sbjct: 310 FEVEALNLFALMQ-REGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVA 368

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           + LI MY KCG L  AR++F+  S  KD + W+SI++GY  HG   EA+ ++++M   G 
Sbjct: 369 SVLITMYVKCGDLVKARQIFDRFS-PKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGM 427

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
             D +T VGVLSAC  +G + EGLEI+ S+ + Y ++P TE  AC+VD+LGRAG ++ A+
Sbjct: 428 ATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAM 487

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
           D I+ MPVE    IWGAL+ A   H N  + ++A K L+QLEP+N   Y+ LSN+YAS  
Sbjct: 488 DLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKG 547

Query: 476 RWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS--VADKAHPCSVSIYEMLDDLILI 533
           RW  VAELR  M+ + + KSPGCSWI +  + H F+  V+ K HP   SI +ML+ L  +
Sbjct: 548 RWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTK-HPELSSIMKMLEKLDGM 606

Query: 534 MRGAAASP 541
           +R A   P
Sbjct: 607 LREAGYYP 614



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 189/416 (45%), Gaps = 64/416 (15%)

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           I  YA  GQ   ++ VF+ +  K +  +NS++ GY +N+   EA  LF  M      P+ 
Sbjct: 23  IARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM------PER 76

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T++    +SG +K+  V               +V+   +++  YV+ G  SE   LF +
Sbjct: 77  NTVSWNGLISGYVKNRMVSEARKAFDTMPE--RNVVSWTAMVRGYVQEGLVSEAETLFWQ 134

Query: 182 MPQRNVGSWNVRISG-------HASSGDFSL---------------------VVRSRRVF 213
           MP++NV SW V + G         + G F +                     +  +R +F
Sbjct: 135 MPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELF 194

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D+M RRNV +WT MI+GYVQNG +D A  LF  M      E N+VS  ++      L+G 
Sbjct: 195 DEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP-----EKNEVSWTAM------LMGY 243

Query: 274 SGGKQIHGFAIRKELN-----HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           + G +I   +   EL        V  CNA+I  + + G +  AR+VF D    KD  TWS
Sbjct: 244 TQGGRIEEAS---ELFDAMPVKAVVACNAMILGFGQNGEVAKARQVF-DQIREKDDGTWS 299

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++  Y   G   EA+ L+  M   G + +  +++ VLS C     ++ G +++  ++ +
Sbjct: 300 AMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKS 359

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS---IWGALVSASVMHG 441
            +      + + ++ M  + G L +A           SP    +W ++++    HG
Sbjct: 360 -QFDSDVFVASVLITMYVKCGDLVKARQIFDRF----SPKDIVMWNSIITGYAQHG 410



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 152/314 (48%), Gaps = 29/314 (9%)

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           ++  NS+++ Y +  +  E   LFD+MP+RN  SWN  ISG+  +    +V  +R+ FD 
Sbjct: 47  IVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKN---RMVSEARKAFDT 103

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  RNV +WTAM+ GYVQ G + EA  LF +M      E N VS   +L     LI +  
Sbjct: 104 MPERNVVSWTAMVRGYVQEGLVSEAETLFWQMP-----EKNVVSWTVML---GGLIQVRR 155

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
             +  G      +   V+  N +I  Y + G L  AR +F D    ++ I+W++++SGY 
Sbjct: 156 IDEARGLFDIMPVKDVVARTN-MISGYCQEGRLAEARELF-DEMPRRNVISWTTMISGYV 213

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            +G+   A  L+  M     + + ++   +L    + G I E  E+++++       P  
Sbjct: 214 QNGQVDVARKLFEVM----PEKNEVSWTAMLMGYTQGGRIEEASELFDAM-------PVK 262

Query: 396 EICACVVDML--GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
            + AC   +L  G+ G++ +A      +  E     W A++      G  E++ L   +L
Sbjct: 263 AVVACNAMILGFGQNGEVAKARQVFDQIR-EKDDGTWSAMIKVYERKG-FEVEALNLFAL 320

Query: 454 IQLEPENPSNYVSL 467
           +Q E    SN+ SL
Sbjct: 321 MQREGVQ-SNFPSL 333



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 127/302 (42%), Gaps = 63/302 (20%)

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           ++N +I+ +A  G    +  +RRVFD+M  + + +W +M+ GY QN    EA  LF +M 
Sbjct: 18  AYNSQIARYARIGQ---IESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMP 74

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
                E N VS                                    N LI  Y K   +
Sbjct: 75  -----ERNTVSW-----------------------------------NGLISGYVKNRMV 94

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
             AR+ F D+   ++ ++W+++V GY   G   EA  L+ +M     + ++++   +L  
Sbjct: 95  SEARKAF-DTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM----PEKNVVSWTVMLGG 149

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG--RAGQLDRALDFIKTMPVEPS 426
             +   I+E   +++       I P  ++ A    + G  + G+L  A +    MP    
Sbjct: 150 LIQVRRIDEARGLFD-------IMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNV 202

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE-NPSNYVSLSNLYASSRRWDAVAELRT 485
            S W  ++S  V +G     D+A K L ++ PE N  ++ ++   Y    R +  +EL  
Sbjct: 203 IS-WTTMISGYVQNGQV---DVARK-LFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFD 257

Query: 486 MM 487
            M
Sbjct: 258 AM 259


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 172/487 (35%), Positives = 276/487 (56%), Gaps = 12/487 (2%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N    T ++T YA       ++  F+ +  + V  +N++++GY +N    E L LF  M 
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMV 252

Query: 114 YSNVSPDDFTLAT-ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
            + + PD+ T  T IS  S          L+  L  K    ++  +  +L+ MY KCG  
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK-QIQLNCFVRTALLDMYAKCGSI 311

Query: 173 SECLNLFDEM-PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                +FDE+   RN  +WN  IS +   G+      +R +F+ M  RNV  W +MI GY
Sbjct: 312 GAARRIFDELGAYRNSVTWNAMISAYTRVGNLD---SARELFNTMPGRNVVTWNSMIAGY 368

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QNG    A+ LF EM    ++ P++V++VSV+  C  L  L  G  +  F    ++   
Sbjct: 369 AQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLS 428

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           +S  NA+I MYS+CGS++ A+RVF++ +  +D +++++++SG+  HG G EA+ L + M 
Sbjct: 429 ISGHNAMIFMYSRCGSMEDAKRVFQEMA-TRDVVSYNTLISGFAAHGHGVEAINLMSTMK 487

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G +PD +T +GVL+AC  +GL+ EG +++ S+ +     P  +  AC+VD+LGR G+L
Sbjct: 488 EGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGEL 542

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
           + A   ++ MP+EP   ++G+L++AS +H   E+ +LA   L +LEP+N  N++ LSN+Y
Sbjct: 543 EDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIY 602

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           AS+ RW  V  +R  MK  G+KK+ G SW+   GK H F VAD++H  S  IY++L +L 
Sbjct: 603 ASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELR 662

Query: 532 LIMRGAA 538
             MR A 
Sbjct: 663 KKMREAG 669



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 222/477 (46%), Gaps = 93/477 (19%)

Query: 40  KQSHSQIL--SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           +Q H+QI+  SL H  N +V+  +     L   P  + L+FNS  + +V+++ S++  Y 
Sbjct: 18  RQLHAQIIHNSLHH-HNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYS 76

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
               H + + +F +M    V PD F    + K +G     N G+  H   +K+G   D  
Sbjct: 77  HLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAG-----NGGIGFHAHVLKLGHGSDAF 131

Query: 158 LANSLMSMYVKCGKFSECLNLFDE---------------------------------MPQ 184
           + N+++ MY + G       +FDE                                 MP+
Sbjct: 132 VRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPE 191

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           RNV +W   ++G+A   D      +RR FD M  R+V +W AM++GY QNG  +E L LF
Sbjct: 192 RNVITWTAMVTGYAKVKDLEA---ARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLF 248

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSS----LIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
            EM +   IEP++ + V+V+  CSS     +  S  + +H    +K++  +  +  AL+D
Sbjct: 249 DEM-VNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLH----QKQIQLNCFVRTALLD 303

Query: 301 MYSKCGSLDCARRVFE------------------------DSS---FN----KDAITWSS 329
           MY+KCGS+  ARR+F+                        DS+   FN    ++ +TW+S
Sbjct: 304 MYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNS 363

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVI-- 386
           +++GY  +G+   A+ L+ +M+      PD +T+V V+SACG  G     LE+ N V+  
Sbjct: 364 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLG----ALELGNWVVRF 419

Query: 387 -NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
               +IK +      ++ M  R G ++ A    + M      S +  L+S    HG+
Sbjct: 420 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS-YNTLISGFAAHGH 475


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 176/519 (33%), Positives = 281/519 (54%), Gaps = 36/519 (6%)

Query: 17   NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
             +T A+V              L  Q H   +  G I++ FVST LI  Y+  G+  +++ 
Sbjct: 995  QFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEF 1054

Query: 77   VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
            + +     D+  +N+++ GY+K++   +ALE FS M+   +  D+ TLAT  K SG + +
Sbjct: 1055 LLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLIN 1114

Query: 137  LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
            L  G  I   +IK+GF  D+ +++ ++ MY+KCG     L LF E+              
Sbjct: 1115 LKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEI-------------- 1160

Query: 197  HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                 R +  AWT MI+GY++NGD D AL ++  M++   ++P+
Sbjct: 1161 --------------------SRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSG-VQPD 1199

Query: 257  KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            + +  +++   S L  L  GKQIH   ++ + + D  +  +L+DMY KCGS+  A RVF 
Sbjct: 1200 EYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFR 1259

Query: 317  DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
                 K  + W++++ G   HG   EA+ L+  M   G +PD +T +GVLSAC  SGL +
Sbjct: 1260 KMDVRK-VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFS 1318

Query: 377  EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            E  + ++++  TY I P  E  +C+VD LGRAG++  A + I +MP + S S++ AL+ A
Sbjct: 1319 EAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGA 1378

Query: 437  SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
                G++E        L+ L+P + S YV LSN+YA+SR+WD V + R MMK + +KK P
Sbjct: 1379 CRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDP 1438

Query: 497  GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            G SWI +  K H F V D++HP +  IYE ++DL+  +R
Sbjct: 1439 GFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIR 1477



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 210/450 (46%), Gaps = 56/450 (12%)

Query: 36   LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
            LKL K++H++I++ G + + +++  LIT Y+ CG    ++ VF+    +D+  +NS++  
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 96   YVKNHGHN-----EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
            Y +    +     E   LF  +     S    TLA + KL      + V   +HG ++KI
Sbjct: 687  YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 151  GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD-------F 203
            GF +D+ ++ +L+++Y K G   +   LFD+MP+R+   WNV +  +  +         F
Sbjct: 747  GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 204  SLVVRS------------------------RRVFDQMKR-----------RNVYAWTAMI 228
            S   RS                        +R  +Q+K             N++AW   +
Sbjct: 807  SAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKL 866

Query: 229  NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288
              ++  G +  A+  F  + L+  I  + V+LV +L        L  G+QIH   I+   
Sbjct: 867  TEFLHAGQIVAAIDCFKTL-LRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSF 925

Query: 289  NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
               V + N+L++MYSK G +  A + F +S    D I+W++++S Y  +    EA+  + 
Sbjct: 926  APVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLISWNTMISSYAQNNLEMEAICTFR 984

Query: 349  KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK----PTTEICACVVDM 404
             ++  G KPD  T+  VL AC  +G   E   +  S ++ Y IK      + +   ++D+
Sbjct: 985  DLLRDGLKPDQFTLASVLRACS-TGDEGEYFTL-GSQVHVYAIKCGIINDSFVSTALIDL 1042

Query: 405  LGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
              + G++D A +F+     +   + W A++
Sbjct: 1043 YSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 121/502 (24%), Positives = 218/502 (43%), Gaps = 75/502 (14%)

Query: 26   FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            F+QVS T          H   + +G   + FVS  L+  Y   G   Q++L+F+ +  +D
Sbjct: 732  FVQVSET---------VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERD 782

Query: 86   VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
              L+N ++  YV+N   +EAL  FS  + S   PD   L  +  + G   D++     H 
Sbjct: 783  AVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCV--IGGVNSDVSNNRKRHA 840

Query: 146  LSIKI----GFVVD----VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR---- 193
              +K      F  D    +   N  ++ ++  G+    ++ F  + +  +G  +V     
Sbjct: 841  EQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVII 900

Query: 194  ISGHASSGDF-------SLVVRS-------------------------RRVFDQMKRRNV 221
            +S    + D        +LV++S                          + F      ++
Sbjct: 901  LSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDL 960

Query: 222  YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG-----G 276
             +W  MI+ Y QN    EA+  F ++ L+D ++P++ +L SVL  CS+  G  G     G
Sbjct: 961  ISWNTMISSYAQNNLEMEAICTFRDL-LRDGLKPDQFTLASVLRACST--GDEGEYFTLG 1017

Query: 277  KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
             Q+H +AI+  + +D  +  ALID+YSK G +D A  +     ++ D  +W++I+ GY  
Sbjct: 1018 SQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH-GKYDFDLASWNAIMFGYIK 1076

Query: 337  HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
              K  +A+  ++ M  +G   D IT+   + A G    + +G +     I  Y IK    
Sbjct: 1077 SNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ-----IQAYAIKLGFN 1131

Query: 397  ----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
                + + V+DM  + G +  AL+    +   P    W  ++S  + +G+ E   L+   
Sbjct: 1132 NDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEVAWTTMISGYIENGD-EDHALSVYH 1189

Query: 453  LIQLEPENPSNYVSLSNLYASS 474
            L+++    P  Y   + + ASS
Sbjct: 1190 LMRVSGVQPDEYTFATLIKASS 1211



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 94/228 (41%), Gaps = 35/228 (15%)

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           + DL +G   H   +  G + D  L N+L++MY KCG       +FD+   R++ +WN  
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 194 ISGHASSGDFSL--VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
           ++ +A   D S   V+   R+F  + R   ++ T +    +    L    V   E     
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLL-REFGFSITRLTLAPLLKLCLLSGFVQVSET---- 738

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
                                      +HG+A++     D+ +  AL+++Y K G +  A
Sbjct: 739 ---------------------------VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQA 771

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           R +F D    +DA+ W+ ++  Y  +    EA+  ++     G  PD 
Sbjct: 772 RLLF-DKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDF 818



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 19/192 (9%)

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           ++  L  GK+ H   +      D  L N LI MYSKCGSL  AR+VF+ SS ++D +TW+
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSS-DRDLVTWN 681

Query: 329 SIVSGYG-LHGKGHEAVL----LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
           SI++ Y       +E VL    L+  +   G     +T+  +L  C  SG +       +
Sbjct: 682 SILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQ-----VS 736

Query: 384 SVINTYRIKPTTE----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             ++ Y +K   E    +   +V++  + G + +A      MP E    +W  ++ A V 
Sbjct: 737 ETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKAYV- 794

Query: 440 HGNSEMQDLAYK 451
              +  QD A +
Sbjct: 795 --ENSFQDEALR 804


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 187/636 (29%), Positives = 309/636 (48%), Gaps = 98/636 (15%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           L +A     +       + T    LQ+ A  +SL   K+ HS I S     +  +  KL+
Sbjct: 82  LENAMELVCMCQKSELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLV 141

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYN-------------------------------- 90
           + YA CG   + + VF++++ K+VYL+N                                
Sbjct: 142 SLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRP 201

Query: 91  -------------------SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
                              S+I+GYV N      LE++  M Y  +  D  T+ ++    
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGC 261

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
                L++G  +H L+IK  F   +  +N+L+ MY KCG     L +F++M +RNV SW 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 192 VRISGHASSGDFSLVVR--------------------------------SRRVFDQMK-- 217
             I+G+   G     +R                                 + V D +K  
Sbjct: 322 SMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN 381

Query: 218 --RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD---------RIEPNKVSLVSVLPT 266
               N++   A+++ Y + G +D A  +F  M +KD          ++P+  ++  +LP 
Sbjct: 382 NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPA 441

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+SL  L  GK+IHG+ +R   + D  + NAL+D+Y KCG L  AR +F D   +KD ++
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPSKDLVS 500

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+ ++SGYG+HG G+EA+  +N+M   G +PD ++ + +L AC  SGL+ +G   +  + 
Sbjct: 501 WTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
           N + I+P  E  AC+VD+L R G L +A +FI+T+P+ P  +IWGAL+    ++ + E+ 
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELA 620

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
           +   + + +LEPEN   YV L+N+YA + +W+ V  +R  +  +GL+K+PGCSWI I GK
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGK 680

Query: 507 THCF-SVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            + F S  + +HP S  I  +L  +   M+     P
Sbjct: 681 VNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFP 716



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 182/368 (49%), Gaps = 23/368 (6%)

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           + V  YN+ I  + +      A+EL      S +     T +++ +L    K L  G  +
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETK--TYSSVLQLCAGSKSLTDGKKV 121

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H +       VD +L   L+S+Y  CG   E   +FD M ++NV  WN  +S +A  GDF
Sbjct: 122 HSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDF 181

Query: 204 SLVV-----------------RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
              +                  +  +FD++  R+V +W +MI+GYV NG  +  L ++ +
Sbjct: 182 KESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQ 241

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           M     I+ +  +++SVL  C++   LS GK +H  AI+      ++  N L+DMYSKCG
Sbjct: 242 MMYLG-IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCG 300

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
            LD A RVFE     ++ ++W+S+++GY   G+   A+ L  +M   G K D++    +L
Sbjct: 301 DLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSIL 359

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
            AC RSG ++ G ++++  I    ++    +C  ++DM  + G +D A     TM V+  
Sbjct: 360 HACARSGSLDNGKDVHD-YIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDI 418

Query: 427 PSIWGALV 434
            S W  ++
Sbjct: 419 IS-WNTMI 425


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 174/512 (33%), Positives = 276/512 (53%), Gaps = 39/512 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    +  +A    L + K  H  IL  G   +  + T LI  Y  CG    +  +F  +
Sbjct: 249 TFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            HKDV  + ++I+G V+N   + A+ +F  M  S V P   T+A++     E+    +G 
Sbjct: 309 MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGT 368

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HG  ++    +D+   NSL++MY KCG   +                           
Sbjct: 369 SVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQ--------------------------- 401

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  S  VFD+M RR++ +W A+++G+ QNG L +AL+LF EM+ K R  P+ +++V
Sbjct: 402 -------SCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMR-KARQRPDSITVV 453

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C+S+  L  GK IH F  +  L   + +  AL+DMYSKCG L  A++ F D    
Sbjct: 454 SLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCF-DRMPQ 512

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D ++WSSI++GYG HGKG  A+ +Y+  +  G +P+ +  + +LSAC  +GL+++GL  
Sbjct: 513 QDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSF 572

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++S+   + I+P  E  AC+VD+L RAG+++ A  F K M  +PS  + G L+ A    G
Sbjct: 573 FHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTG 632

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ D+  + ++ L+P N  NYV L++ YAS +RWD V E+ T MK   LKK PG S+I
Sbjct: 633 NVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFI 692

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
            +HG    F     +HP      E++D ++L+
Sbjct: 693 ELHGTITTFFTDHSSHP---QFEEIIDRVLLL 721



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 134/520 (25%), Positives = 248/520 (47%), Gaps = 76/520 (14%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H +++  G+ S+ +++T LI  Y+  G    ++ VF+++  ++V  + ++I  Y +   H
Sbjct: 71  HQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEH 130

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           + A  +++ M    + P   T+  +  LSG ++ +++  L H   I+ GF  DV LANS+
Sbjct: 131 DVAFSMYNIMRRQGIQPSSVTM--LGLLSGVLELVHLQCL-HACVIQYGFGSDVALANSM 187

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD----FSLVVR--------SR 210
           +++Y KCG+  +   LF+ M  R+V SWN  +SG+A  G+      L++R         +
Sbjct: 188 LNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQ 247

Query: 211 RVFDQMK------------------------RRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           + F  +                          ++ +  T++I  Y++ G+++ A  +F  
Sbjct: 248 QTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEG 307

Query: 247 M------------------------------QLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           M                               LK R+ P+  ++ SVL  C+ L     G
Sbjct: 308 MMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLG 367

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
             +HG+ +R+ +  D+   N+L+ MY+KCG L+ +  VF+  S  +D ++W++IVSG+  
Sbjct: 368 TSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS-RRDIVSWNAIVSGHAQ 426

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           +G   +A+LL+N+M     +PD IT+V +L AC   G +++G  I+N V  +  + P   
Sbjct: 427 NGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSC-LGPCIL 485

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           I   +VDM  + G L  A      MP +   S W ++++    HG  E     Y   +  
Sbjct: 486 IDTALVDMYSKCGDLGSAQKCFDRMPQQDLVS-WSSIIAGYGSHGKGETALRMYSDFLHT 544

Query: 457 EPENPSNYVSLSNLYASSRRW---DAVAELRTMMKDRGLK 493
             + P++ + LS L A S        ++   +M KD G++
Sbjct: 545 GIQ-PNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIE 583



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 170/369 (46%), Gaps = 45/369 (12%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           YN++IN         + L  +S+M  ++  PD  T  ++ K    +   + G+  H   I
Sbjct: 16  YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
             G+  D  +A SL++ Y K                           GH  S        
Sbjct: 76  VDGYSSDSYIATSLINFYSK--------------------------FGHNQS-------- 101

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           +R+VFD M  RNV  WT MI  Y + G+ D A  ++  M+ +  I+P+ V+++ +L    
Sbjct: 102 ARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMR-RQGIQPSSVTMLGLLSGVL 160

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE--DSSFNKDAIT 326
            L+ L   + +H   I+     DV+L N+++++Y KCG ++ A+ +FE  D+   +D I+
Sbjct: 161 ELVHL---QCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDA---RDVIS 214

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+S+VSGY   G   E + L  +M   G +PD  T   ++SA      +  G  ++  ++
Sbjct: 215 WNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHIL 274

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
               ++  + I   ++ M  + G ++ A    + M  +   S W A++S  V +  ++M 
Sbjct: 275 RA-GLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVIS-WTAMISGLVQNDCADMA 332

Query: 447 DLAYKSLIQ 455
              ++ +++
Sbjct: 333 VTVFRRMLK 341



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 32/248 (12%)

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           ++ A+IN     G   + L+ +  M L     P+  +  S++  C+SL   S G   H  
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSM-LSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQR 73

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            I    + D  +  +LI+ YSK G    AR+VF D+  +++ + W++++  Y   G+   
Sbjct: 74  VIVDGYSSDSYIATSLINFYSKFGHNQSARKVF-DTMDDRNVVPWTTMIGCYTRAGEHDV 132

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSA--------CGRSGLINEG----LEIYNSVINTYR 390
           A  +YN M   G +P  +T++G+LS         C  + +I  G    + + NS++N Y 
Sbjct: 133 AFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYC 192

Query: 391 IKPTTEICACVVDM------------------LGRAGQLDRALDFIKTMPVEPSPSIWGA 432
                E    + ++                  LG   ++ + L  +KT  +EP    +G+
Sbjct: 193 KCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGS 252

Query: 433 LVSASVMH 440
           LVSA+ M 
Sbjct: 253 LVSAAAMQ 260


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 169/468 (36%), Positives = 264/468 (56%), Gaps = 38/468 (8%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T LIT YA  G    ++ +F+ I  KDV  +N++I+GYV+     EALEL+ +M  +NV 
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           PD+ T+ T+     +   + +G  +H      GF  ++ + N L+ +Y KCG+      L
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGL 254

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F                                    + +++V +W  +I G+       
Sbjct: 255 FQ----------------------------------GLAKKDVISWNTLIGGHTHMNLYK 280

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLCN 296
           EAL+LF EM L+    PN V+++SVLP C+ L  +  G+ IH +  +  K + +  SL  
Sbjct: 281 EALLLFQEM-LRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLT 339

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           +LIDMY+KCG ++ A++VF DS   +   +W++++ G+ +HGK + A  L++KM   G  
Sbjct: 340 SLIDMYAKCGDIEAAKQVF-DSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 398

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD IT VG+LSAC  SG+++ G  I+ S+   Y+I P  E   C++D+LG  G    A +
Sbjct: 399 PDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKE 458

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
            I+TMP+EP   IW +L+ A  MH N E+ +   ++LI++EPENP +YV LSN+YA++ R
Sbjct: 459 MIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGR 518

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           WD VA++RT++ D+G+KK+PGCS I I    H F + DK HP +  IY
Sbjct: 519 WDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIY 566



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 206/370 (55%), Gaps = 11/370 (2%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F +IQ  ++ ++N++  G+  N     AL+L+  M    + P+ ++   + K   + K 
Sbjct: 21  IFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKA 80

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L  G  IHG  +K+G+ +D+ +  SL+SMY + G+  +   +FD    R+V S+   I+G
Sbjct: 81  LIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITG 140

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +AS G    +  +R++FD++  ++V +W AMI+GYV+  +  EAL L+ +M +K  ++P+
Sbjct: 141 YASRG---YINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDM-MKTNVKPD 196

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + ++V+V+  C+    +  G+Q+H +        ++ + N LID+YSKCG ++ A  +F+
Sbjct: 197 ESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQ 256

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
             +  KD I+W++++ G+       EA+LL+ +M+  G  P+ +T++ VL AC   G I+
Sbjct: 257 GLA-KKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAID 315

Query: 377 EGLEIYNSVINTYRIKPTTE---ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            G  I+  V    R+K  T    +   ++DM  + G ++ A     +M +  S S W A+
Sbjct: 316 IGRWIH--VYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM-LTRSLSSWNAM 372

Query: 434 VSASVMHGNS 443
           +    MHG +
Sbjct: 373 IFGFAMHGKA 382



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 132/310 (42%), Gaps = 46/310 (14%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           S++L +Q HS I   G  SN  +   LI  Y+ CG+   +  +F  +  KDV  +N+LI 
Sbjct: 212 SIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIG 271

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK--IGF 152
           G+   + + EAL LF  M  S  SP+D T+ ++      +  +++G  IH    K   G 
Sbjct: 272 GHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGV 331

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
                L  SL+ MY KCG       +FD M  R++ SWN                     
Sbjct: 332 TNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWN--------------------- 370

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
                        AMI G+  +G  + A  LF +M+ K+ I+P+ ++ V +L  CS    
Sbjct: 371 -------------AMIFGFAMHGKANAAFDLFSKMR-KNGIDPDDITFVGLLSACSHSGM 416

Query: 273 LSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           L  G+ I       + I  +L H       +ID+   CG    A+ +        D + W
Sbjct: 417 LDLGRHIFRSMSQDYKITPKLEH----YGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIW 472

Query: 328 SSIVSGYGLH 337
            S++    +H
Sbjct: 473 CSLLKACKMH 482


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 174/485 (35%), Positives = 262/485 (54%), Gaps = 37/485 (7%)

Query: 30  SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
           S  H+ L L K+ H      G + +  V+   + AYA C     ++ VF  ++ K V  +
Sbjct: 412 SGEHQLLSL-KEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSW 470

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N+LI  + +N    ++L+LF  M  S + PD FT+ ++      +K L  G  IHG  ++
Sbjct: 471 NALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLR 530

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            G  +D  +  SLMS+Y++C                                  S ++  
Sbjct: 531 NGLELDEFIGISLMSLYIQC----------------------------------SSMLLG 556

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           + +FD+M+ +++  W  MI G+ QN    EAL  F +M L   I+P ++++  VL  CS 
Sbjct: 557 KLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQM-LSGGIKPQEIAVTGVLGACSQ 615

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           +  L  GK++H FA++  L+ D  +  ALIDMY+KCG ++ ++ +F D    KD   W+ 
Sbjct: 616 VSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIF-DRVNEKDEAVWNV 674

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           I++GYG+HG G +A+ L+  M   G +PD  T +GVL AC  +GL+ EGL+    + N Y
Sbjct: 675 IIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLY 734

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            +KP  E  ACVVDMLGRAGQL  AL  +  MP EP   IW +L+S+   +G+ E+ +  
Sbjct: 735 GVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEV 794

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            K L++LEP    NYV LSNLYA   +WD V ++R  MK+ GL K  GCSWI I G  + 
Sbjct: 795 SKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYR 854

Query: 510 FSVAD 514
           F V+D
Sbjct: 855 FLVSD 859



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 217/454 (47%), Gaps = 75/454 (16%)

Query: 1   MILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFV-ST 59
           ++ S A+N    V+S + +   +   L+    H+++ + ++ H+ + +   + N  V ST
Sbjct: 75  LLHSHAQN--GTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLST 132

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVS 118
           ++I  Y+ CG P+ S+ VF++ + KD++LYN+L++GY +N    +A+ LF  +   ++++
Sbjct: 133 RIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLA 192

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC--------- 169
           PD+FTL  ++K    + D+ +G  +H L++K G   D  + N+L++MY KC         
Sbjct: 193 PDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKV 252

Query: 170 ----------------------GKFSECLNLF-------DEMPQRNVGSWNVRISGHASS 200
                                 G F EC  +F       +E    +V +    I   A+ 
Sbjct: 253 FETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAV 312

Query: 201 GD-----------FSLVV---------------------RSRRVFDQMKRRNVYAWTAMI 228
           G+           F L +                      +R +FD    +NV +W  +I
Sbjct: 313 GEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTII 372

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288
            GY + GD      L  EMQ ++++  N+V++++VLP CS    L   K+IHG+A R   
Sbjct: 373 WGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGF 432

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
             D  + NA +  Y+KC SLDCA RVF      K   +W++++  +  +G   +++ L+ 
Sbjct: 433 LKDELVANAFVAAYAKCSSLDCAERVFCGME-GKTVSSWNALIGAHAQNGFPGKSLDLFL 491

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
            M+  G  PD  TI  +L AC R   +  G EI+
Sbjct: 492 VMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIH 525



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 150/322 (46%), Gaps = 48/322 (14%)

Query: 103 NEALELF-SNMYYSNVSPDDFTLATISKL---SGEIKDLNVGMLIHGL-SIKIGFVVDVI 157
           N+AL L  S+     VS  D +   I  L    G  K+++VG  +H L S       DV+
Sbjct: 70  NDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVV 129

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           L+  +++MY  CG  S+                                  SR VFD  K
Sbjct: 130 LSTRIIAMYSACGSPSD----------------------------------SRGVFDAAK 155

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            ++++ + A+++GY +N    +A+ LFLE+     + P+  +L  V   C+ +  +  G+
Sbjct: 156 EKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGE 215

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            +H  A++     D  + NALI MY KCG ++ A +VFE +  N++ ++W+S++     +
Sbjct: 216 AVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFE-TMRNRNLVSWNSVMYACSEN 274

Query: 338 GKGHEAVLLYNKMVC---LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           G   E   ++ +++     G  PD+ T+V V+ AC   G +  G+ ++      +++  T
Sbjct: 275 GGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGL---AFKLGIT 331

Query: 395 TEICA--CVVDMLGRAGQLDRA 414
            E+     +VDM  + G L  A
Sbjct: 332 EEVTVNNSLVDMYSKCGYLGEA 353



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 14/266 (5%)

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSV---LPTCSSLIGLSGGKQIHGF-AIRKELN 289
           +G+L++AL L         +  + +S  ++   L  C     +  G+++H   +   +L 
Sbjct: 66  SGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLR 125

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
           +DV L   +I MYS CGS   +R VF D++  KD   +++++SGY  +    +A+ L+ +
Sbjct: 126 NDVVLSTRIIAMYSACGSPSDSRGVF-DAAKEKDLFLYNALLSGYSRNALFRDAISLFLE 184

Query: 350 MVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
           ++      PD  T+  V  AC     +  G  ++   +          +   ++ M G+ 
Sbjct: 185 LLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAF-VGNALIAMYGKC 243

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVS 466
           G ++ A+   +TM      S W +++ A   +G        +K L+  E E   P     
Sbjct: 244 GFVESAVKVFETMRNRNLVS-WNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATM 302

Query: 467 LSNLYASSRRWDAVAELRTMMKDRGL 492
           ++ + A +    AV E+R  M   GL
Sbjct: 303 VTVIPACA----AVGEVRMGMVVHGL 324


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 301/562 (53%), Gaps = 73/562 (12%)

Query: 5   SARNTFALVTSRNYT--SATVQHFLQVSATHRSLKLTKQSHSQILSLG-----HISNPFV 57
           SA N +  + S   +  S T     +  A  ++ +  KQ H+QIL  G     H+    +
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120

Query: 58  S--------------------------TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           S                          T +IT YA  G   ++Q +F+ I  KDV  +N+
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNA 180

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I+GY +   + EALELF+ M   +V PD+ T+AT+        ++ +G  IH      G
Sbjct: 181 MISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHG 240

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F  ++ L N+L+ +Y KCG+                                    R+  
Sbjct: 241 FGSNLKLVNALIDLYSKCGEME----------------------------------RAHG 266

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +F+ ++ ++V +W  +I GY       EAL++F EM LK    PN V+++S+LP C+ L 
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEM-LKLGETPNDVTMLSILPACAHLG 325

Query: 272 GLSGGKQIHGFAIRKELN---HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            +  G+ IH + I K+L     + SL  +LIDMY+KCG+++ A +VF D+  NK   + +
Sbjct: 326 AIDIGRWIHVY-IDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVF-DTILNKSLSSCN 383

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++ G+ +HG+   A  L ++M   G +PD IT VG+LSAC  +GL + G +I+ S+   
Sbjct: 384 AMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLD 443

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           YRI+P  E   C++D+LGR+G    A + I +M +EP   IWG+L+ A  +H N E+ +L
Sbjct: 444 YRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGEL 503

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
             + L+++EP+NP +YV LSN+YA+S RWD VA +RT++ D+GLKK PGCS I I    H
Sbjct: 504 IAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVH 563

Query: 509 CFSVADKAHPCSVSIYEMLDDL 530
            F + DK HP +  IY+ML+++
Sbjct: 564 EFLIGDKFHPQNKEIYKMLEEI 585



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 201/369 (54%), Gaps = 7/369 (1%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF SIQ  +   +N++I G+  +     AL L+  M    +SP+ +T   + K   + K 
Sbjct: 34  VFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKA 93

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
              G  IH   +K G  VD+ +  SL+SMY + G   +   +FD    R+V S+   I+G
Sbjct: 94  AQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITG 153

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +AS G+     +++++FD++  ++V +W AMI+GY + G   EAL LF EM +K  ++P+
Sbjct: 154 YASRGNMD---KAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEM-MKMDVKPD 209

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + ++ +VL TC+    +  G+QIH +        ++ L NALID+YSKCG ++ A  +FE
Sbjct: 210 ESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFE 269

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
              + KD I+W++++ GY       EA+L++ +M+ LG  P+ +T++ +L AC   G I+
Sbjct: 270 GLQY-KDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAID 328

Query: 377 EGLEIYNSVINTYR-IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            G  I+  +    + I   T +   ++DM  + G ++ A     T+ +  S S   A++ 
Sbjct: 329 IGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTI-LNKSLSSCNAMIF 387

Query: 436 ASVMHGNSE 444
              MHG ++
Sbjct: 388 GFAMHGRAD 396


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 178/521 (34%), Positives = 281/521 (53%), Gaps = 67/521 (12%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L +Q H QIL LG  +  F  + L+  YA  G    ++ VF+ ++ K+V + N++I G +
Sbjct: 163 LGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLL 222

Query: 98  K-------------------------------NHGHNEALELFSNMYYSNVSPDDFTLAT 126
           +                               N   +EAL++F  M    V  D +T  +
Sbjct: 223 RCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGS 282

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           I    G +  L  G  IH    +  +  +V + ++L+ MY KC                 
Sbjct: 283 ILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCR---------------- 326

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
               +VR++                VF +M  +N+ +WTAMI GY QNG  +EA+ +F E
Sbjct: 327 ----SVRLA--------------EAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSE 368

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           MQ +D I+P+  +L SV+ +C++L  L  G Q H  A+   L   V++ NAL+ +Y KCG
Sbjct: 369 MQ-RDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCG 427

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
           S++ A R+F++ SF+ D ++W+++V GY   GK  E + L+ KM+  G KPD +T +GVL
Sbjct: 428 SIEDAHRLFDEMSFH-DQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVL 486

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           SAC RSGL+++G   ++S+   + I P  +   C++D+  R+G L +A +FIK MP  P 
Sbjct: 487 SACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPD 546

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486
              W  L+SA  + G+ E+   A ++L++L+P+NP++YV L +++AS   W+ VA+LR  
Sbjct: 547 AFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRG 606

Query: 487 MKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           M+DR +KK PGCSWI    K H FS  D++HP S +IYE L
Sbjct: 607 MRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKL 647



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 197/403 (48%), Gaps = 10/403 (2%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N      L++A A  G     + +F S+  +D   YN+L+ G+ +   H  A   +  + 
Sbjct: 76  NLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALL 135

Query: 114 Y--SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
              + V P   T++ +  ++  + D  +G  +H   +++GF       + L+ MY K G 
Sbjct: 136 RDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGP 195

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             +   +FDEM  +NV   N  I+G        +V  +R +F+ ++ R+   WT M+ G 
Sbjct: 196 IGDARRVFDEMEGKNVVMCNTMITGLLRC---KMVAEARALFEAIEERDSITWTTMVTGL 252

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QNG   EAL +F  M+  + +  ++ +  S+L  C +L  L  GKQIH +  R     +
Sbjct: 253 TQNGLESEALDVFRRMR-AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDN 311

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           V + +AL+DMYSKC S+  A  VF    + K+ I+W++++ GYG +G G EAV ++++M 
Sbjct: 312 VFVGSALVDMYSKCRSVRLAEAVFRRMMW-KNIISWTAMIVGYGQNGCGEEAVRVFSEMQ 370

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G KPD  T+  V+S+C     + EG + ++ +     ++P   +   +V + G+ G +
Sbjct: 371 RDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSI 429

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSL 453
           + A      M      S W ALV      G + E  DL  K L
Sbjct: 430 EDAHRLFDEMSFHDQVS-WTALVMGYAQFGKAKETIDLFEKML 471



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 137/309 (44%), Gaps = 44/309 (14%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  KQ H+ I    +  N FV + L+  Y+ C     ++ VF  +  K++  + ++I 
Sbjct: 292 ALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIV 351

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY +N    EA+ +FS M    + PDDFTL ++      +  L  G   H L++  G   
Sbjct: 352 GYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRP 411

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
            V ++N+L+++Y KCG   +   LFDEM   +  SW                        
Sbjct: 412 YVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSW------------------------ 447

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS-SLIGL 273
                     TA++ GY Q G   E + LF +M L   ++P+ V+ + VL  CS S +  
Sbjct: 448 ----------TALVMGYAQFGKAKETIDLFEKM-LSKGVKPDGVTFIGVLSACSRSGLVD 496

Query: 274 SGGKQIHGFAIRKELNHDVSLCN----ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
            G    H      + +HD+   +     +ID+YS+ G L  A    +      DA  W++
Sbjct: 497 KGRSYFHSM----QQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWAT 552

Query: 330 IVSGYGLHG 338
           ++S   L G
Sbjct: 553 LLSACRLRG 561



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 143/314 (45%), Gaps = 44/314 (14%)

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           L N+L++ Y   G       +FD MP RN+ + N  +S  A +G   LV    R+F  + 
Sbjct: 48  LLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAG---LVRDMERLFTSLP 104

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR--IEPNKVSLVSVLPTCSSLIGLSG 275
           +R+  ++ A++ G+ + G    A   ++ + L+D   + P+++++  V+   S+L   + 
Sbjct: 105 QRDAVSYNALLAGFSRAGAHARAAGAYVAL-LRDEAGVRPSRITMSGVVMVASALGDRAL 163

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------------------- 316
           G+Q+H   +R          + L+DMY+K G +  ARRVF+                   
Sbjct: 164 GRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLR 223

Query: 317 -----------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
                      ++   +D+ITW+++V+G   +G   EA+ ++ +M   G   D  T   +
Sbjct: 224 CKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSI 283

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L+ACG    + EG +I+  +  T   +    + + +VDM  +   +  A    + M    
Sbjct: 284 LTACGALAALEEGKQIHAYITRTC-YEDNVFVGSALVDMYSKCRSVRLAEAVFRRM---- 338

Query: 426 SPSIWGALVSASVM 439
              +W  ++S + M
Sbjct: 339 ---MWKNIISWTAM 349


>gi|115452309|ref|NP_001049755.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|24796822|gb|AAN64498.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108707537|gb|ABF95332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548226|dbj|BAF11669.1| Os03g0283500 [Oryza sativa Japonica Group]
 gi|215737043|dbj|BAG95972.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 598

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 170/505 (33%), Positives = 279/505 (55%), Gaps = 13/505 (2%)

Query: 4   SSARNTFA--LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
           S+A   FA   V+    T +T+   L  S    S  +T + H+     G  S+ FVS  L
Sbjct: 98  SAAVRLFASSAVSPDEITLSTLLRSLAASGPALSPLVTGELHAVAFLRGFGSDLFVSNAL 157

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY------S 115
           ITAYA  G    ++ VF+ +  +DV  +NSLI+   +   + E L+LF            
Sbjct: 158 ITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGD 217

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
            V P+  T+ ++     ++K ++ G+ +H  + + G  +D+ + NS++  Y KCG+    
Sbjct: 218 GVGPNGVTVTSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYA 277

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
             L D M +++  S++  I+G+ ++G    V    ++F Q   R +  W ++I G VQNG
Sbjct: 278 RQLLDGMTRKDSISYSAMITGYMNNGH---VEEGMQLFRQASARGISMWNSVIAGLVQNG 334

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
              + L L  EM +  ++ PN  +L  V+P+  S   L G KQ HG+AIR + +  + L 
Sbjct: 335 RQSDVLRLLQEM-IASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLV 393

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           +ALID Y+K G LD AR+VF+ +  ++  I W+SI+S    HG+  EA+ L+N+M+  G+
Sbjct: 394 SALIDAYAKAGFLDTARKVFKLTE-HRSTIVWTSIISAVAAHGEAVEALSLFNQMITAGA 452

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
           KPD +T   VLSAC  SG + E  +++NS+   + I P  E  AC+V  L RAG L  A+
Sbjct: 453 KPDTVTFTTVLSACAHSGKVAEARKVFNSMQAVFGISPVIEQYACMVSALSRAGMLKEAV 512

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
             +  MP EP+  +WGAL++ + + G+ E    A+  L  +EP+N  NY+ ++NLY+++ 
Sbjct: 513 KLVNKMPFEPNAKVWGALLNGAAVVGDVEFGRYAFDRLFVIEPKNTGNYIVMANLYSNAG 572

Query: 476 RWDAVAELRTMMKDRGLKKSPGCSW 500
           +W+    +R+M+   GL+K PGC+W
Sbjct: 573 KWEEAETIRSMLWGVGLEKVPGCTW 597



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 215/453 (47%), Gaps = 68/453 (15%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H +Q+ A    L   +Q H+++++     + F+++KLI+ Y+   +   ++ VF+SI   
Sbjct: 19  HLIQLCAESGHLAAARQIHARLVAASVTPSNFLASKLISLYSRADRLRDARRVFDSIPQP 78

Query: 85  DVYLYNS-LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK---LSGEIKDLNVG 140
            ++ +N+ LI+  + +   + A+ LF++   S VSPD+ TL+T+ +    SG      V 
Sbjct: 79  SLFAWNAILISLSLHSPDPSAAVRLFAS---SAVSPDEITLSTLLRSLAASGPALSPLVT 135

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             +H ++   GF  D+ ++N+L++ Y   G       +FDEMP+R+V SWN  IS  A +
Sbjct: 136 GELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMPRRDVVSWNSLISACARA 195

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           G                      W      Y +  DL +  V  +     D + PN V++
Sbjct: 196 G----------------------W------YRECLDLFQEFVR-VRCSDGDGVGPNGVTV 226

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            SVL  C+ L  +  G  +H FA    L+ D+++ N++I  Y+KCG L  AR++  D   
Sbjct: 227 TSVLHACAQLKVVDFGIGVHRFAAESGLDMDMAVWNSIIGFYAKCGRLQYARQLL-DGMT 285

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNK---------------MVCLGSKPDIITIV-- 363
            KD+I++S++++GY  +G   E + L+ +               +V  G + D++ ++  
Sbjct: 286 RKDSISYSAMITGYMNNGHVEEGMQLFRQASARGISMWNSVIAGLVQNGRQSDVLRLLQE 345

Query: 364 ----GVLSACGRSGLINEGLEIYNSVINT-----YRIK----PTTEICACVVDMLGRAGQ 410
                VL       ++   +  +++++       Y I+     +  + + ++D   +AG 
Sbjct: 346 MIASKVLPNSATLSIVMPSVPSFSTLLGAKQAHGYAIRNDYDQSIRLVSALIDAYAKAGF 405

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           LD A    K +    S  +W +++SA   HG +
Sbjct: 406 LDTARKVFK-LTEHRSTIVWTSIISAVAAHGEA 437



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 118/247 (47%), Gaps = 25/247 (10%)

Query: 212 VFDQMKRRNVYAWTA-MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL------ 264
           VFD + + +++AW A +I+  + + D   A+ LF        + P++++L ++L      
Sbjct: 71  VFDSIPQPSLFAWNAILISLSLHSPDPSAAVRLF----ASSAVSPDEITLSTLLRSLAAS 126

Query: 265 -PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
            P  S L+      ++H  A  +    D+ + NALI  Y+  G +  AR VF++    +D
Sbjct: 127 GPALSPLV----TGELHAVAFLRGFGSDLFVSNALITAYANAGDMRSARAVFDEMP-RRD 181

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCL------GSKPDIITIVGVLSACGRSGLINE 377
            ++W+S++S     G   E + L+ + V +      G  P+ +T+  VL AC +  +++ 
Sbjct: 182 VVSWNSLISACARAGWYRECLDLFQEFVRVRCSDGDGVGPNGVTVTSVLHACAQLKVVDF 241

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G+ ++     +  +     +   ++    + G+L  A   +  M  + S S + A+++  
Sbjct: 242 GIGVHRFAAES-GLDMDMAVWNSIIGFYAKCGRLQYARQLLDGMTRKDSIS-YSAMITGY 299

Query: 438 VMHGNSE 444
           + +G+ E
Sbjct: 300 MNNGHVE 306


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 196/604 (32%), Positives = 293/604 (48%), Gaps = 78/604 (12%)

Query: 14  TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73
           TS+         F+ +  T  +     Q  +QI++ G   N +V+   ITA A  G   +
Sbjct: 13  TSKPLHRVVEDKFISLLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACARLGGIRR 72

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           ++ VF+     +   +N++  GY + + H + + LF+ M+ +  SP+ FT   + K    
Sbjct: 73  ARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCAT 132

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY--------------------------- 166
                 G  +H +  K GF  +  +  +L+ MY                           
Sbjct: 133 ANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWT 192

Query: 167 ------VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-- 218
                 V C        LFD  PQR+V  WNV +SG+   GD   +V +R +FD+M    
Sbjct: 193 AIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGD---MVAARELFDRMPDRD 249

Query: 219 -----------------------------RNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
                                        RNVY+W  +I GYV+NG   EAL  F  M +
Sbjct: 250 VMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLV 309

Query: 250 KDRIE----------PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
               E          PN  ++V+VL  CS L  L  GK +H +A       ++ + NALI
Sbjct: 310 LVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALI 369

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           DMY+KCG ++ A  VF D    KD ITW++I++G  +HG   +A+ L+ +M   G +PD 
Sbjct: 370 DMYAKCGVIEKALDVF-DGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDG 428

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           +T VG+LSAC   GL+  GL  + S+++ Y I P  E   C+VD+LGRAG +D+A+D ++
Sbjct: 429 VTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVR 488

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            MP+EP   IW AL+ A  M+ N EM +LA + LI+LEP NP N+V +SN+Y    R   
Sbjct: 489 KMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQD 548

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
           VA L+  M+D G +K PGCS I  +     F   D+ HP + SIY  L  L +++R    
Sbjct: 549 VARLKVAMRDTGFRKVPGCSVIGCNDSMVEFYSLDERHPETDSIYRALQGLTILLRSHGY 608

Query: 540 SPHL 543
            P+L
Sbjct: 609 VPNL 612



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
            +V   +YT   V   L   +    L++ K  H    S+G+  N FV   LI  YA CG 
Sbjct: 321 GVVVPNDYTVVAV---LTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGV 377

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATI 127
             ++  VF+ +  KD+  +N++ING +  HGH  +AL LF  M  +   PD  T   I
Sbjct: 378 IEKALDVFDGLDVKDIITWNTIING-LAMHGHVADALSLFERMKRAGERPDGVTFVGI 434


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 176/491 (35%), Positives = 281/491 (57%), Gaps = 12/491 (2%)

Query: 41  QSHSQILS---LGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           Q H+ IL    L H   P ++ KL  AYA  G+   S  +F+     D++L+ + IN   
Sbjct: 47  QIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTAS 106

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
            N   ++A  L+  +  S ++P++FT +++ K S   K    G LIH   +K G  +D  
Sbjct: 107 INGLKDQAFLLYVQLLSSEINPNEFTFSSLLK-SCSTKS---GKLIHTHVLKFGLGIDPY 162

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           +A  L+ +Y K G       +FD MP+R++ S    I+ +A  G+   V  +R +FD M 
Sbjct: 163 VATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGN---VEAARALFDSMC 219

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            R++ +W  MI+GY Q+G  ++AL+LF ++  + + +P+++++V+ L  CS +  L  G+
Sbjct: 220 ERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGR 279

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            IH F     +  +V +C  LIDMYSKCGSL+ A  VF D+   KD + W+++++GY +H
Sbjct: 280 WIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTP-RKDIVAWNAMIAGYAMH 338

Query: 338 GKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           G   +A+ L+N+M  + G +P  IT +G L AC  +GL+NEG+ I+ S+   Y IKP  E
Sbjct: 339 GYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIE 398

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
              C+V +LGRAGQL RA + IK M ++    +W +++ +  +HG+  +     + LI L
Sbjct: 399 HYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGL 458

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
             +N   YV LSN+YAS   ++ VA++R +MK++G+ K PG S I I  K H F   D+ 
Sbjct: 459 NIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDRE 518

Query: 517 HPCSVSIYEML 527
           H  S  IY ML
Sbjct: 519 HSKSKEIYTML 529



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 141/341 (41%), Gaps = 75/341 (21%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV----------------- 77
           S K  K  H+ +L  G   +P+V+T L+  YA  G    +Q V                 
Sbjct: 141 STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMIT 200

Query: 78  --------------FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDF 122
                         F+S+  +D+  +N +I+GY ++   N+AL LF  +       PD+ 
Sbjct: 201 CYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEI 260

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T+        +I  L  G  IH         ++V +   L+ MY KCG   E + +F++ 
Sbjct: 261 TVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDT 320

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P++++ +WN  I+G+A                             ++GY Q     +AL 
Sbjct: 321 PRKDIVAWNAMIAGYA-----------------------------MHGYSQ-----DALR 346

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNA 297
           LF EMQ    ++P  ++ +  L  C+    ++ G +I       + I+ ++ H       
Sbjct: 347 LFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEH----YGC 402

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           L+ +  + G L  A    ++ + + D++ WSS++    LHG
Sbjct: 403 LVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHG 443


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 172/526 (32%), Positives = 291/526 (55%), Gaps = 40/526 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC---GQPTQSQLVF 78
           T+   +   A    L L +Q HSQ +  G   +  V   LI  YA C   G    ++ +F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           + I   +V+ + ++I GYV+  G++E AL+LF  M  ++V P+ FT ++  K    +  L
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAAL 392

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            +G  +   ++K+GF     +ANSL+SMY + G+  +                       
Sbjct: 393 RIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDD----------------------- 429

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                      +R+ FD +  +N+ ++  +I+ Y +N + +EAL LF E++    +  + 
Sbjct: 430 -----------ARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE-DQGMGASA 477

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            +  S+L   +S+  +  G+QIH   I+  L  + S+CNALI MYS+CG+++ A +VFED
Sbjct: 478 FTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFED 537

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
              +++ I+W+SI++G+  HG   +A+ L++KM+  G +P+++T + VLSAC   GL+NE
Sbjct: 538 ME-DRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNE 596

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G + + S+   + + P  E  AC+VD+LGR+G L  A+ FI +MP +    +W   + A 
Sbjct: 597 GWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
            +HGN E+   A K +I+ EP +P+ Y+ LSNLYAS+ +WD V+ +R  MK++ L K  G
Sbjct: 657 RVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAG 716

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           CSW+ +  K H F V D +HP +  IY+ L +L + ++     P+L
Sbjct: 717 CSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNL 762



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 186/393 (47%), Gaps = 37/393 (9%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF  +  ++   +  +I   ++     EA++LF  M  S   PD FTL+ +      ++ 
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L +G  +H  +I+ G  +D  +   L++MY KC                           
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKC--------------------------- 319

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD-EALVLFLEMQLKDRIEP 255
              S D S+   +R++FDQ+   NV++WTAMI GYVQ G  D EAL LF  M L   I P
Sbjct: 320 ---SVDGSMCA-ARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI-P 374

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N  +  S L  C++L  L  G+Q+   A++   +    + N+LI MY++ G +D AR+ F
Sbjct: 375 NHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAF 434

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D  F K+ I++++++  Y  +    EA+ L+N++   G      T   +LS     G I
Sbjct: 435 -DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTI 493

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            +G +I+  VI +  +K    +C  ++ M  R G ++ A    + M      S W ++++
Sbjct: 494 GKGEQIHARVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVIS-WTSIIT 551

Query: 436 ASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSL 467
               HG  ++  +L +K L +    N   Y+++
Sbjct: 552 GFAKHGFATQALELFHKMLEEGVRPNLVTYIAV 584



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 174/385 (45%), Gaps = 46/385 (11%)

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           + N   ++A+    +M +    PD  T +   K     +  ++G L+H    +    +D 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           +  NSL+S+Y KCG++ +  ++F  M     GS                           
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFQLM-----GS--------------------------- 129

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
             R++ +W+AM++ +  N     AL+ F++M +++   PN+    +    CS+   +S G
Sbjct: 130 -SRDLISWSAMVSCFANNNMGFRALLTFVDM-IENGYYPNEYCFAAATRACSTAEFVSVG 187

Query: 277 KQIHGFAIRK-ELNHDVSLCNALIDMYSKC-GSLDCARRVFEDSSFNKDAITWSSIVSGY 334
             I GF ++   L  DV +   LIDM+ K  G L  A +VFE     ++A+TW+ +++  
Sbjct: 188 DSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMP-ERNAVTWTLMITRL 246

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
              G   EA+ L+ +M+  G +PD  T+ GV+SAC    L+  G ++++  I   R   T
Sbjct: 247 MQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAI---RHGLT 303

Query: 395 TEICA--CVVDMLGRA---GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            + C   C+++M  +    G +  A      + ++ +   W A+++  V  G  + + L 
Sbjct: 304 LDRCVGCCLINMYAKCSVDGSMCAARKIFDQI-LDHNVFSWTAMITGYVQKGGYDEEALD 362

Query: 450 YKSLIQLEPENPSNYVSLSNLYASS 474
               + L    P+++   S L A +
Sbjct: 363 LFRGMILTHVIPNHFTFSSTLKACA 387


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 171/504 (33%), Positives = 279/504 (55%), Gaps = 38/504 (7%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           +L ++ H  ++  G ++   V+  LI  ++  G   ++++VF+ ++ KD+  + ++I+GY
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            KN    +A+E ++ M +  V PD+ T+A++      +  L+ G+++H  + + G    V
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           I+ANSL+ MY KC    + L +F  +P +N                              
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNKN------------------------------ 462

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
               V +WT++I G   N    EAL  F +M L   ++PN V+LVSVL  C+ +  LS G
Sbjct: 463 ----VISWTSIILGLRLNYRSFEALFFFQQMILS--LKPNSVTLVSVLSACARIGALSCG 516

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K+IH  A+R  L  D  L NAL+DMY +CG ++ A   F  +S  KD  +W+ +++GY  
Sbjct: 517 KEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF--NSCEKDVASWNILLTGYAQ 574

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
            GKG  AV L++KM+     PD IT   +L AC RSG++ +GLE + S+ + + I P  +
Sbjct: 575 QGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLK 634

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             A VVD+LGRAG+L+ A +FIK MP++P P+IWGAL++A  ++ N E+ +LA + + ++
Sbjct: 635 HYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEM 694

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           + ++   Y+ L NLYA S +WD VA +R +M++  L   PGCSW+ + G+ H F   D  
Sbjct: 695 DTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDF 754

Query: 517 HPCSVSIYEMLDDLILIMRGAAAS 540
           HP    I  +L+     M     S
Sbjct: 755 HPQIKEINAVLEGFYEKMEATGLS 778



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 217/436 (49%), Gaps = 41/436 (9%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           ++ H  ++  G  S+  V   LIT Y  CG    ++LVF+ +  +D   +N++I+GY +N
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN 274

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               E L LF  M    V PD  T+ ++      + D  +G  +HG  IK GFV +V + 
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVN 334

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           NSL+ M+                   +VG W+                 +  VF +M+ +
Sbjct: 335 NSLIQMH------------------SSVGCWD----------------EAEMVFSKMEFK 360

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           ++ +WTAMI+GY +NG  ++A+  +  M+  + + P+++++ SVL  C+ L  L  G  +
Sbjct: 361 DLVSWTAMISGYEKNGLPEKAVETYTIME-HEGVVPDEITIASVLSACAGLGLLDKGIML 419

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H FA R  L   V + N+LIDMYSKC  +D A  VF     NK+ I+W+SI+ G  L+ +
Sbjct: 420 HEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRLNYR 478

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+  + +M+ L  KP+ +T+V VLSAC R G ++ G EI+   + T  +     +  
Sbjct: 479 SFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRT-GLGFDGFLPN 536

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            ++DM  R G+++ A +   +   E   + W  L++     G   +    +  +I+ +  
Sbjct: 537 ALLDMYVRCGRMEPAWNQFNS--CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDV- 593

Query: 460 NPSNYVSLSNLYASSR 475
           NP      S L A SR
Sbjct: 594 NPDEITFTSLLCACSR 609



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 181/362 (50%), Gaps = 37/362 (10%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L++ +   G   ++  VF  +  +D++ +N L+ GY K    +EAL L+  M +  + PD
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            +T   + +  G + DL  G  +H   I+ GF  DV + N+L++MYVKCG       +FD
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFD 254

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            MP+R+  SWN                                  AMI+GY +N    E 
Sbjct: 255 RMPRRDRISWN----------------------------------AMISGYFENDVCLEG 280

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF  M+ +  ++P+ +++ SV+  C +L     G+++HG+ I+     +VS+ N+LI 
Sbjct: 281 LRLFFMMR-EFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQ 339

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           M+S  G  D A  VF    F KD ++W++++SGY  +G   +AV  Y  M   G  PD I
Sbjct: 340 MHSSVGCWDEAEMVFSKMEF-KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEI 398

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           TI  VLSAC   GL+++G+ ++     T  +     +   ++DM  +   +D+AL+    
Sbjct: 399 TIASVLSACAGLGLLDKGIMLHEFADRT-GLTSYVIVANSLIDMYSKCRCIDKALEVFHR 457

Query: 421 MP 422
           +P
Sbjct: 458 IP 459



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 156/355 (43%), Gaps = 38/355 (10%)

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           NSLI          +AL    +M    VS ++ T   + +L    +  + G  +H    K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
               + V L N+L+SM+V+ G   E              +W                   
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVE--------------AW------------------- 149

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
             VF +M  R++++W  ++ GY + G  DEAL L+  M L   I P+  +   VL TC  
Sbjct: 150 -YVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRM-LWVGIRPDVYTFPCVLRTCGG 207

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  L+ G+++H   IR     DV + NALI MY KCG +  AR VF D    +D I+W++
Sbjct: 208 LPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVF-DRMPRRDRISWNA 266

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++SGY  +    E + L+  M      PD++T+  V+SAC   G    G E++  VI T 
Sbjct: 267 MISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTG 326

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            +   + +   ++ M    G  D A      M  +   S W A++S    +G  E
Sbjct: 327 FVAEVS-VNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVS-WTAMISGYEKNGLPE 379



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 131/301 (43%), Gaps = 31/301 (10%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           ++ S    S T+   L   A   +L   K+ H+  L  G   + F+   L+  Y  CG+ 
Sbjct: 489 MILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRM 548

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI---S 128
             +   FNS + KDV  +N L+ GY +      A+ELF  M  S+V+PD+ T  ++    
Sbjct: 549 EPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCAC 607

Query: 129 KLSGEIKDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRN 186
             SG + D   G+     +  K     ++    S++ +  + G+  +      +MP   +
Sbjct: 608 SRSGMVTD---GLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPD 664

Query: 187 VGSWNV-----RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
              W       RI  +   G+ +    ++ +F +M  ++V  +  + N Y  +G  DE  
Sbjct: 665 PAIWGALLNACRIYQNVELGELA----AQHIF-EMDTKSVGYYILLCNLYADSGKWDEV- 718

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
                 +++  +  N+   ++V P C S + ++G  Q+H F    + +  +   NA+++ 
Sbjct: 719 -----ARVRKIMRENR---LTVDPGC-SWVEVAG--QVHAFLTGDDFHPQIKEINAVLEG 767

Query: 302 Y 302
           +
Sbjct: 768 F 768


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 176/479 (36%), Positives = 276/479 (57%), Gaps = 12/479 (2%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N    T ++T YA  G    ++  F+ +  + V  +N++ + Y +     EAL LF  M 
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 114 YSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
              ++PDD T + TIS  S  I D  +   I  +  +   V++  +  +L+ M+ K G  
Sbjct: 251 EEGITPDDTTWVVTISSCSS-IGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNL 309

Query: 173 SECLNLFDEM-PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
               N+FDE+  QRN  +WN+ IS +   G  SL   +R +FD M +R+V +W +MI GY
Sbjct: 310 EIARNIFDELGSQRNAVTWNIMISAYTRVGKLSL---ARELFDNMPKRDVVSWNSMIAGY 366

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QNG+   ++ LF EM     I+P++V++ SVL  C  +  L     +      K +   
Sbjct: 367 AQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLG 426

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           +S  N+LI MYSKCGS+  A R+F+     +D +++++++SG+  +G G EA+ L   M 
Sbjct: 427 ISGFNSLIFMYSKCGSVADAHRIFQTMG-TRDVVSFNTLISGFAANGHGKEAIKLVLTME 485

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G +PD +T +GVL+AC  +GL+NEG  ++ S+       PT +  AC+VD+LGRAG+L
Sbjct: 486 EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGEL 540

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
           D A   I++MP++P   ++G+L++AS +H    + +LA   L +LEP+N  NYV LSN+Y
Sbjct: 541 DEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIY 600

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           AS  RW+ V  +R MMK  GLKKS G SW+   G+ H F+V D++H  S  IY++L +L
Sbjct: 601 ASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAEL 659



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 209/469 (44%), Gaps = 71/469 (15%)

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           H  N +VS  LI    L   P     +F S    D  +Y+ ++  Y +   HN+ + LF 
Sbjct: 30  HSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFK 89

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
             +  N+ P  F    + KL+G+      G + H   +K+G + D  + N+++ MY K G
Sbjct: 90  CTHSLNLRPQPFVYIYLIKLAGK-----SGNMFHAYVLKLGHIDDHFIRNAILDMYAKNG 144

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV----------------------- 207
           +     NLF++M +R +  WN  ISG   SG+ +  V                       
Sbjct: 145 QVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAK 204

Query: 208 -----RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                 +RR FD+M  R+V +W AM + Y Q     EAL LF +M L++ I P+  + V 
Sbjct: 205 MGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQM-LEEGITPDDTTWVV 263

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------ 316
            + +CSS+   +    I     +K +  +  +  AL+DM++K G+L+ AR +F+      
Sbjct: 264 TISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQR 323

Query: 317 -------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
                                    D+   +D ++W+S+++GY  +G+   ++ L+ +M+
Sbjct: 324 NAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMI 383

Query: 352 -CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
            C+  +PD +TI  VLSACG  G +     + + ++    IK        ++ M  + G 
Sbjct: 384 SCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-IVREKNIKLGISGFNSLIFMYSKCGS 442

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           +  A    +TM      S +  L+S    +G+ +    A K ++ +E E
Sbjct: 443 VADAHRIFQTMGTRDVVS-FNTLISGFAANGHGKE---AIKLVLTMEEE 487



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 40/293 (13%)

Query: 48  SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
            LG   N      +I+AY   G+ + ++ +F+++  +DV  +NS+I GY +N     ++E
Sbjct: 318 ELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIE 377

Query: 108 LFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
           LF  M    ++ PD+ T+A++    G I  L +   +  +  +    + +   NSL+ MY
Sbjct: 378 LFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMY 437

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
            KCG  ++   +F  M  R+V S+N  ISG A+                           
Sbjct: 438 SKCGSVADAHRIFQTMGTRDVVSFNTLISGFAA--------------------------- 470

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
                  NG   EA+ L L M+ ++ IEP+ V+ + VL  CS    L+ GK +       
Sbjct: 471 -------NGHGKEAIKLVLTME-EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAP 522

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
            ++H       ++D+  + G LD A+ + +       A  + S+++   +H +
Sbjct: 523 TVDHYA----CMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKR 571


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 177/497 (35%), Positives = 281/497 (56%), Gaps = 33/497 (6%)

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           +  Y    +P +++ +F+ +   +   +N L++GYV+N   +EA ++F  M      P+ 
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKM------PER 54

Query: 122 FTLATISKLSGEIKD---LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
             ++  + + G +++       +L   +  +     +V+    ++   ++ G+  E   L
Sbjct: 55  NVVSWTAMIRGYVQEGLIEEAELLFWRMPER-----NVVSWTVMLGGLIEDGRVDEARQL 109

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING-------- 230
           FD MP ++V +    I G  S G    ++ +R +FD+M +RNV AWT+MI+G        
Sbjct: 110 FDMMPVKDVVASTNMIDGLCSEGR---LIEAREIFDEMPQRNVVAWTSMISGEKDDGTWS 166

Query: 231 -----YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
                Y + G   EAL LF  MQ ++ + P+  S++SVL  C SL  L  G+Q+H   +R
Sbjct: 167 TMIKIYERKGFELEALALFSLMQ-REGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVR 225

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
            + + D+ + + LI MY KCG L  A+RVF+  S +KD + W+SI++GY  HG G +A+ 
Sbjct: 226 SQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFS-SKDIVMWNSIIAGYAQHGFGEKALE 284

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           +++ M      PD IT +GVLSAC  +G + EGLEI+ S+ + Y++ P TE  AC+VD+L
Sbjct: 285 VFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLL 344

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
           GRAG+L+ A++ I+ MPVE    +WGAL+ A   H N ++ ++A K L+QLEP N   Y+
Sbjct: 345 GRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYI 404

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS-VADKAHPCSVSIY 524
            LSNLY+S  RW  V ELR  M+ + L+KSPGCSWI +  K H FS     +HP    I 
Sbjct: 405 LLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMIL 464

Query: 525 EMLDDLILIMRGAAASP 541
           + L  L  ++R A   P
Sbjct: 465 KKLGKLGALLREAGYCP 481



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 10/236 (4%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           +V   L V  +  SL   +Q HSQ++      + +VS+ LIT Y  CG    ++ VF+  
Sbjct: 199 SVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRF 258

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI---SKLSGEIKDLN 138
             KD+ ++NS+I GY ++    +ALE+F +M+ S+++PD+ T   +      +G++K+  
Sbjct: 259 SSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKE-- 316

Query: 139 VGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRIS 195
            G+ I   S+K  + VD    +   ++ +  + GK +E +NL + MP + +   W   + 
Sbjct: 317 -GLEIFE-SMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLG 374

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
              +  +  L   + +   Q++  N   +  + N Y       + + L   M+ K+
Sbjct: 375 ACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKN 430


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 174/482 (36%), Positives = 277/482 (57%), Gaps = 14/482 (2%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++ AYA  G+   +  +F+ +  +D   +N L+   V++   ++A ELF  M   +V   
Sbjct: 142 MLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMPERDVMAW 201

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
              +  +++ SG++ +  V  L   +  +     +V+  N+++S Y +  +  E L+LF 
Sbjct: 202 TTMVDGVAR-SGKVDEARV--LFDSMPER-----NVVSWNAMISGYTRNHRIDEALDLFM 253

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           +MP+R++ S N+ ++G   + D     R+R +FD+M  RNV  WT M+NGY++    + A
Sbjct: 254 KMPERDIASCNIMVTGFIQNKDLK---RARELFDEMPERNVVTWTTMMNGYLKGKQSELA 310

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF  M L     PN+V+ +  L  CS L  L  GKQ+H    +     D  + +AL++
Sbjct: 311 LGLFSGM-LMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMN 369

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           +Y+KCG +  AR++F D S  KD I+W+ I++ Y  HG G EA+LLY KM   G +P+ +
Sbjct: 370 VYAKCGEIGLARKLF-DLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDV 428

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T V +LSAC  SGL++EGL+I+ S++N   I    E   C++D+  RAG+LD A   I  
Sbjct: 429 TYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHY 488

Query: 421 MPVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
           + ++P S S+W AL+     HGN  + +LA ++L+Q EP+N   Y  LSN+YAS+ +W  
Sbjct: 489 LKIKPASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKE 548

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
            AE+R+ M +RGLKK PGCSWI +  K H F   DK+H  S  IY +L ++  +MR    
Sbjct: 549 AAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHHMMRIVGT 608

Query: 540 SP 541
            P
Sbjct: 609 VP 610



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 177/391 (45%), Gaps = 69/391 (17%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQ-HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV 117
           T L++AYA  G    ++ +F+     ++V  + +L++GY +    +EA  LF  M   NV
Sbjct: 77  TALVSAYARRGMLRDARELFDRPDARRNVVTWTALLSGYARARLVDEAEALFQRMPQRNV 136

Query: 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
                                                  +  N+++  Y   G+  +   
Sbjct: 137 ---------------------------------------VSWNTMLEAYAAAGRVGDACA 157

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           LFD MP R+ GSWN+ ++    SG    V ++R +F +M  R+V AWT M++G  ++G +
Sbjct: 158 LFDRMPVRDAGSWNILLATLVRSGS---VDKARELFGRMPERDVMAWTTMVDGVARSGKV 214

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-----NHDV 292
           DEA VLF  M  ++ +  N +              +SG  + H      +L       D+
Sbjct: 215 DEARVLFDSMPERNVVSWNAM--------------ISGYTRNHRIDEALDLFMKMPERDI 260

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL-LYNKMV 351
           + CN ++  + +   L  AR +F D    ++ +TW+++++GY L GK  E  L L++ M+
Sbjct: 261 ASCNIMVTGFIQNKDLKRARELF-DEMPERNVVTWTTMMNGY-LKGKQSELALGLFSGML 318

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN-TYRIKPTTEICACVVDMLGRAGQ 410
             G++P+ +T +G L AC     + EG +++  +   T++     E  + ++++  + G+
Sbjct: 319 MAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVE--SALMNVYAKCGE 376

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  A      +  E     W  +++A   HG
Sbjct: 377 IGLARKLFD-LSREKDLISWNGIIAAYAHHG 406



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 30/290 (10%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK-R 218
           N L++     G+  +   LFD  P  +V SW   +S +A  G   ++  +R +FD+   R
Sbjct: 46  NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRG---MLRDARELFDRPDAR 102

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           RNV  WTA+++GY +   +DEA  LF  M  +     N VS  ++L   +     + G+ 
Sbjct: 103 RNVVTWTALLSGYARARLVDEAEALFQRMPQR-----NVVSWNTMLEAYA-----AAGRV 152

Query: 279 IHGFAIRKELN-HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
               A+   +   D    N L+    + GS+D AR +F      +D + W+++V G    
Sbjct: 153 GDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMP-ERDVMAWTTMVDGVARS 211

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           GK  EA +L++ M     + ++++   ++S   R+  I+E L+++  +       P  +I
Sbjct: 212 GKVDEARVLFDSM----PERNVVSWNAMISGYTRNHRIDEALDLFMKM-------PERDI 260

Query: 398 CACVVDMLG--RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
            +C + + G  +   L RA +    MP E +   W  +++  +    SE+
Sbjct: 261 ASCNIMVTGFIQNKDLKRARELFDEMP-ERNVVTWTTMMNGYLKGKQSEL 309



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 13/216 (6%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H  I       + FV + L+  YA CG+   ++ +F+  + KD+  +N +I  Y  +
Sbjct: 346 KQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHH 405

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               EA+ L+  M  +   P+D T   +          + G++  GL I    V D  +A
Sbjct: 406 GVGIEAILLYEKMQENGYRPNDVTYVVLLSACS-----HSGLVDEGLKIFESMVNDRSIA 460

Query: 160 ------NSLMSMYVKCGKFSECLNLFDEMPQRNVGS--WNVRISGHASSGDFSLVVRSRR 211
                   L+ +  + G+  +   L   +  +      W+  + G  + G+ S+   + R
Sbjct: 461 VRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAAR 520

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
              Q +  N   +T + N Y   G   EA  +  EM
Sbjct: 521 NLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEM 556



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 93/205 (45%), Gaps = 19/205 (9%)

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           DV    AL+  Y++ G L  AR +F+     ++ +TW++++SGY       EA  L+ +M
Sbjct: 72  DVVSWTALVSAYARRGMLRDARELFDRPDARRNVVTWTALLSGYARARLVDEAEALFQRM 131

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRA 408
                + ++++   +L A   +G + +   +++ +       P  +  +   ++  L R+
Sbjct: 132 ----PQRNVVSWNTMLEAYAAAGRVGDACALFDRM-------PVRDAGSWNILLATLVRS 180

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE-NPSNYVSL 467
           G +D+A +    MP E     W  +V      G  +   + + S+    PE N  ++ ++
Sbjct: 181 GSVDKARELFGRMP-ERDVMAWTTMVDGVARSGKVDEARVLFDSM----PERNVVSWNAM 235

Query: 468 SNLYASSRRWDAVAELRTMMKDRGL 492
            + Y  + R D   +L   M +R +
Sbjct: 236 ISGYTRNHRIDEALDLFMKMPERDI 260


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 191/574 (33%), Positives = 295/574 (51%), Gaps = 51/574 (8%)

Query: 3   LSSARNTFALVTSRNYTSAT--VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           L  A + F  +  RN  S T  +  F Q      +++L ++   Q ++          T 
Sbjct: 412 LDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA--------TKTA 463

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY------------------------ 96
           ++TAYA  G+  +++L+F+ I + +V  +N++I GY                        
Sbjct: 464 MMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASW 523

Query: 97  -------VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
                  V+N    EALEL   ++ S   P D +  +       I D+ +G +IH L+IK
Sbjct: 524 AAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIK 583

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            G   +  + N L+SMY KCG   +  ++F  +  ++  SWN  ISG + +    ++  +
Sbjct: 584 TGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSEN---YMLDDA 640

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           R VF++M +R+V +WTA+I+ YVQ G  + AL LFL+M L   I+PN++++ S+L  C +
Sbjct: 641 RVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDM-LARGIKPNQLTVTSLLSACGN 699

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD--CARRVFEDSSFNKDAITW 327
           L  +  G+Q H    +   +  + + N+LI MY KCG  D  C   VFE+     D ITW
Sbjct: 700 LGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC---VFEEMP-EHDLITW 755

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++++ G   +G G EA+ ++ +M   G  PD ++ +GVL AC  +GL++EG   +NS+  
Sbjct: 756 NAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQ 815

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            Y I P      C+VD+LGRAG L  A   I+ MPV+P   IW AL+ A  +H N E+  
Sbjct: 816 KYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQ 875

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
              + L Q+     + YV LSNL+AS   WD VAE+R +MKD+GL K PG SWI +  K 
Sbjct: 876 RVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKL 935

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           HCF   D+ H     IY  L +     R     P
Sbjct: 936 HCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMP 969



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 194/388 (50%), Gaps = 26/388 (6%)

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
           G+  +++ VFN +  +DV  +NS+INGY +N   +EA  LF      N+      L   +
Sbjct: 185 GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYA 244

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           K  G I++     +   ++ +     +V+  N+++S YV+ G       LFDEMP++NV 
Sbjct: 245 K-EGRIEEAR--EVFESMTER-----NVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVA 296

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           SWN  ++G+      S    +R +FDQM  RN  +W  MI+GYV   D  EA  +F++M 
Sbjct: 297 SWNSVVTGYCHCYRMS---EARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKM- 352

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
            +    P++   V VL   + L  L     +   AI+     DV + +A+++ Y++ GSL
Sbjct: 353 CRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSL 412

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
           D A   FE     ++  +W+++++ +   G+  +A+ LY ++     +  + T   +++A
Sbjct: 413 DLAMHFFETMP-ERNEYSWTTMIAAFAQCGRLDDAIQLYERV----PEQTVATKTAMMTA 467

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
             + G I +   I++ ++N     P       ++    + G L  A D  + MPV+ S S
Sbjct: 468 YAQVGRIQKARLIFDEILN-----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSAS 522

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQL 456
            W A+++  V   N E ++ A + LI+L
Sbjct: 523 -WAAMIAGFVQ--NEESRE-ALELLIEL 546



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 134/549 (24%), Positives = 232/549 (42%), Gaps = 108/549 (19%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           +  AR  F  +T RN  S  A +  ++Q      + KL  +   +        N      
Sbjct: 249 IEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEK--------NVASWNS 300

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++T Y  C + ++++ +F+ +  ++   +  +I+GYV    + EA ++F  M  +   PD
Sbjct: 301 VVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPD 360

Query: 121 D-FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
               +  +S ++G + DL +   +  ++IK G+  DV++ +++++ Y + G     ++ F
Sbjct: 361 QSIFVVVLSAITG-LDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFF 419

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVV----------------------------RSRR 211
           + MP+RN  SW   I+  A  G     +                            ++R 
Sbjct: 420 ETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARL 479

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR------------------- 252
           +FD++   NV AW A+I GY QNG L EA  LF +M +K+                    
Sbjct: 480 IFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREA 539

Query: 253 ----IE-------PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
               IE       P+  S  S L  C+++  +  G+ IH  AI+     +  + N LI M
Sbjct: 540 LELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISM 599

Query: 302 YSKCGS-------------------------------LDCARRVFEDSSFNKDAITWSSI 330
           Y+KCG+                               LD AR VFE     +D ++W++I
Sbjct: 600 YAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMP-KRDVVSWTAI 658

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           +S Y   G G  A+ L+  M+  G KP+ +T+  +LSACG  G I  G E ++++I    
Sbjct: 659 ISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG-EQFHALIFKLG 717

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
                 +   ++ M  + G  D    F + MP E     W A++     +G   +   A 
Sbjct: 718 FDTFLFVGNSLITMYFKCGYEDGFCVF-EEMP-EHDLITWNAVLVGCAQNG---LGKEAI 772

Query: 451 KSLIQLEPE 459
           K   Q+E E
Sbjct: 773 KIFEQMEVE 781



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 79/301 (26%)

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD-------FSLVV------------- 207
           + G+  E   +F+EM QR+V SWN  I+G++ +G        F   V             
Sbjct: 183 RLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTG 242

Query: 208 --------RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    +R VF+ M  RNV +W AMI+GYVQNGDL  A  LF EM       P K  
Sbjct: 243 YAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM-------PEK-- 293

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
                                          +V+  N+++  Y  C  +  AR +F D  
Sbjct: 294 -------------------------------NVASWNSVVTGYCHCYRMSEARELF-DQM 321

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +++++W  ++SGY       EA  ++ KM    ++PD    V VLSA   +GL  + L
Sbjct: 322 PERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAI--TGL--DDL 377

Query: 380 EIYNSVINTYRIKPTTE----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           E+  S +    IK   E    + + +++   R G LD A+ F +TMP E +   W  +++
Sbjct: 378 ELIGS-LRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMP-ERNEYSWTTMIA 435

Query: 436 A 436
           A
Sbjct: 436 A 436


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 176/479 (36%), Positives = 276/479 (57%), Gaps = 12/479 (2%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N    T ++T YA  G    ++  F+ +  + V  +N++ + Y +     EAL LF  M 
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 114 YSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
              ++PDD T + TIS  S  I D  +   I  +  +   V++  +  +L+ M+ K G  
Sbjct: 251 EEGITPDDTTWVVTISSCSS-IGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNL 309

Query: 173 SECLNLFDEM-PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
               N+FDE+  QRN  +WN+ IS +   G  SL   +R +FD M +R+V +W +MI GY
Sbjct: 310 EIARNIFDELGSQRNAVTWNIMISAYTRVGKLSL---ARELFDNMPKRDVVSWNSMIAGY 366

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QNG+   ++ LF EM     I+P++V++ SVL  C  +  L     +      K +   
Sbjct: 367 AQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLG 426

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           +S  N+LI MYSKCGS+  A R+F+     +D +++++++SG+  +G G EA+ L   M 
Sbjct: 427 ISGFNSLIFMYSKCGSVADAHRIFQTMG-TRDVVSFNTLISGFAANGHGKEAIKLVLTME 485

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G +PD +T +GVL+AC  +GL+NEG  ++ S+       PT +  AC+VD+LGRAG+L
Sbjct: 486 EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGEL 540

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
           D A   I++MP++P   ++G+L++AS +H    + +LA   L +LEP+N  NYV LSN+Y
Sbjct: 541 DEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIY 600

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           AS  RW+ V  +R MMK  GLKKS G SW+   G+ H F+V D++H  S  IY++L +L
Sbjct: 601 ASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAEL 659



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 209/469 (44%), Gaps = 71/469 (15%)

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           H  N +VS  LI    L   P     +F S    D  +Y+ ++  Y +   HN+ + LF 
Sbjct: 30  HSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFK 89

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
             +  N+ P  F    + KL+G+      G L H   +K+G + D  + N+++ MY K G
Sbjct: 90  CTHSLNLRPQPFVYIYLIKLAGK-----SGNLFHAYVLKLGHIDDHFIRNAILDMYAKNG 144

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV----------------------- 207
           +     NLF++M +R +  WN  ISG   SG+ +  V                       
Sbjct: 145 QVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAK 204

Query: 208 -----RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                 +RR FD+M  R+V +W AM + Y Q     EAL LF +M L++ I P+  + V 
Sbjct: 205 MGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQM-LEEGITPDDTTWVV 263

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE------ 316
            + +CSS+   +    I     +K +  +  +  AL+DM++K G+L+ AR +F+      
Sbjct: 264 TISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQR 323

Query: 317 -------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
                                    D+   +D ++W+S+++GY  +G+   ++ L+ +M+
Sbjct: 324 NAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMI 383

Query: 352 -CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
            C+  +PD +TI  VLSACG  G +     + + ++    IK        ++ M  + G 
Sbjct: 384 SCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-IVREKNIKLGISGFNSLIFMYSKCGS 442

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           +  A    +TM      S +  L+S    +G+ +    A K ++ +E E
Sbjct: 443 VADAHRIFQTMGTRDVVS-FNTLISGFAANGHGKE---AIKLVLTMEEE 487



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 40/293 (13%)

Query: 48  SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
            LG   N      +I+AY   G+ + ++ +F+++  +DV  +NS+I GY +N     ++E
Sbjct: 318 ELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIE 377

Query: 108 LFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
           LF  M    ++ PD+ T+A++    G I  L +   +  +  +    + +   NSL+ MY
Sbjct: 378 LFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMY 437

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
            KCG  ++   +F  M  R+V S+N  ISG A+                           
Sbjct: 438 SKCGSVADAHRIFQTMGTRDVVSFNTLISGFAA--------------------------- 470

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
                  NG   EA+ L L M+ ++ IEP+ V+ + VL  CS    L+ GK +       
Sbjct: 471 -------NGHGKEAIKLVLTME-EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAP 522

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
            ++H       ++D+  + G LD A+ + +       A  + S+++   +H +
Sbjct: 523 TVDHYA----CMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKR 571


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 184/584 (31%), Positives = 299/584 (51%), Gaps = 69/584 (11%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           + L+V   +  LK  K+ H Q+++    +N F  T ++  YA C Q   +  +F+ +  +
Sbjct: 152 YLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPER 211

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D+  +N++I G+ +N    +ALEL   M      PD  TL T+   + ++  L VG  IH
Sbjct: 212 DLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIH 271

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFS------------------------------- 173
           G +I+ GF   V ++ +L  MY KCG                                  
Sbjct: 272 GYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPE 331

Query: 174 ECLNLFDEMPQRNVGSWNVRIS---------GHASSGDF--------------------- 203
           + + +F++M +  +    V I          G    G F                     
Sbjct: 332 KAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLI 391

Query: 204 SLVVRSRRV------FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           S+  + +RV      F+ +  R   +W AMI GY QNG + EAL  F EM+    ++P+ 
Sbjct: 392 SMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMK-SLGMKPDS 450

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            ++VSV+P  + L      K IHG  IR  L+ ++ +  AL+DMYSKCG++  AR++F+ 
Sbjct: 451 FTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM 510

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
            S ++  ITW++++ GYG HG G  A+ L++KM     +P+ IT + V+SAC  SGL++E
Sbjct: 511 IS-DRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDE 569

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           GL  + S+   Y ++P+ +    +VD+LGRAG++  A DFI+ MP+ P  +++GA   A 
Sbjct: 570 GLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGAC 629

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
            +H N E+ + A K L +L P+    +V L+N+YAS+ +W  VAE+R  M+ +GLKK+PG
Sbjct: 630 KIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPG 689

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           CS + +  + H F      HP S  IY  L++L+  ++ A   P
Sbjct: 690 CSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVP 733



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 196/425 (46%), Gaps = 46/425 (10%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           S+K   Q    ++  G  +     TKL++ ++  G   ++  VF  I  K   LY++++ 
Sbjct: 61  SMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY KN     AL     M Y +V P  +    + K+ G+  DL  G  IHG  I   F  
Sbjct: 121 GYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +V     +++MY KC +  +   +FD MP+R++ SWN                       
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNT---------------------- 218

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                       +I G+ QNG   +AL L L MQ + +  P+ ++LV+VLP  + +  L 
Sbjct: 219 ------------IIAGFSQNGFAKKALELVLRMQDEGQ-RPDSITLVTVLPAAADVGLLM 265

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK IHG+AIR      V++  AL DMYSKCGS++ AR +F D    K  ++W+S++ GY
Sbjct: 266 VGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIF-DGMDQKTVVSWNSMMDGY 324

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G+  +A+ ++ KM+  G  P  +TI+  L AC   G +  G +  +  ++   +   
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSD 383

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN--------SEMQ 446
             +   ++ M  +  ++D A D    +      S W A++     +G         SEM+
Sbjct: 384 ISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVS-WNAMILGYAQNGRVSEALNCFSEMK 442

Query: 447 DLAYK 451
            L  K
Sbjct: 443 SLGMK 447



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 127/271 (46%), Gaps = 5/271 (1%)

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            + RVF+ +  +    +  M+ GY +N  L+ AL     M+  D ++P   +   +L  C
Sbjct: 99  EAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDD-VKPVVYNFTYLLKVC 157

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
                L  GK+IHG  I      +V     +++MY+KC  +D A ++F D    +D ++W
Sbjct: 158 GDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMF-DRMPERDLVSW 216

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++I++G+  +G   +A+ L  +M   G +PD IT+V VL A    GL+  G  I+   I 
Sbjct: 217 NTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIR 276

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
               K    I   + DM  + G ++ A      M  +   S W +++   V +G  E   
Sbjct: 277 AGFAK-LVNISTALADMYSKCGSVETARLIFDGMDQKTVVS-WNSMMDGYVQNGEPEKAI 334

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
             ++ +++ E  +P+    +  L+A +   D
Sbjct: 335 AVFEKMLE-EGIDPTGVTIMEALHACADLGD 364



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 7/242 (2%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+   L   A    L+  K  H  +  L   S+  V   LI+ Y+ C +   +  +F
Sbjct: 348 TGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIF 407

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           N++  +    +N++I GY +N   +EAL  FS M    + PD FT+ ++     E+    
Sbjct: 408 NNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTR 467

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
               IHGL I+     ++ +  +L+ MY KCG       LFD +  R+V +WN  I G+ 
Sbjct: 468 HAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYG 527

Query: 199 SSGDFSLVVRSRRVFDQMKR----RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           + G   L   +  +FD+MK+     N   + ++I+    +G +DE L  F  M+    +E
Sbjct: 528 THG---LGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLE 584

Query: 255 PN 256
           P+
Sbjct: 585 PS 586



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 7/212 (3%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           +L  C+S+  L    QI    I+  L ++      L+ ++SK GS++ A RVFE      
Sbjct: 55  LLELCTSMKEL---HQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKL 111

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           DA+ + +++ GY  +     A+    +M     KP +     +L  CG +  +  G EI+
Sbjct: 112 DAL-YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIH 170

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
             +I T            VV+M  +  Q+D A      MP E     W  +++    +G 
Sbjct: 171 GQLI-TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMP-ERDLVSWNTIIAGFSQNGF 228

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           ++ + L     +Q E + P +   ++ L A++
Sbjct: 229 AK-KALELVLRMQDEGQRPDSITLVTVLPAAA 259


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 188/584 (32%), Positives = 299/584 (51%), Gaps = 73/584 (12%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V+SR      +Q   + +    +L   KQ H+QI+      +  ++ KLI+A +LC Q  
Sbjct: 13  VSSRRIFEERLQDLPKCA----NLNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTN 68

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            +  VFN +Q  +V+L NSLI  +  N    +A  +FS M    +  D+FT   + K   
Sbjct: 69  LALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACS 128

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG------------KFSE------ 174
            +  L V  ++H    K+G   D+ + N+L+  Y +CG            K SE      
Sbjct: 129 GLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSW 188

Query: 175 ---------------CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
                             LFDEMPQR++ SWN  + G+A   + S   R+  +F++M  R
Sbjct: 189 NSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARCREMS---RAFELFEKMPER 245

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS------VLPTCSSLIG- 272
           N  +W+ M+ GY + GD++ A V+F +M    +       +++      +L     L+  
Sbjct: 246 NTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQ 305

Query: 273 -------------------------LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
                                    LS G + H    +  LN + S+ NAL+DMY+KCGS
Sbjct: 306 MVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGS 365

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           L  A  VF D    KD ++W++++ G G+HG G EA+ L+++M   G  PD +T + VL 
Sbjct: 366 LKKAFDVFNDMP-KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLC 424

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           +C  +GLI+EG++ + S+   Y + P  E   C+VD+LGR G+L  A+  ++TMP+EP+ 
Sbjct: 425 SCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNV 484

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
            IWGAL+ A  MH   ++      +L++L+P +P NY  LSN+YA++  W+ VA++R+ M
Sbjct: 485 VIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVADIRSKM 544

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           K  G++K  G S + +    H F+V DK+HP S  IY+ML  LI
Sbjct: 545 KSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLI 588


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 181/551 (32%), Positives = 298/551 (54%), Gaps = 44/551 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T   +  F    A   ++   +Q H   +  G   +  + + ++  Y   G   ++++VF
Sbjct: 255 TLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVF 314

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            ++  KDV  +N ++ GY +     +ALE+   M    +  D  TL+ +  ++ + +DL 
Sbjct: 315 RNMAVKDVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTRDLV 374

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF-------------------------- 172
           +GM  H   +K  F  DV++++ ++ MY KCG+                           
Sbjct: 375 LGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACA 434

Query: 173 -----SECLNLFDEMPQR----NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR---- 219
                 E L LF +M       NV SWN  I G   +G    V  +R +F +M       
Sbjct: 435 EQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQ---VAEARNMFAEMCSSGVMP 491

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N+  WT M++G VQNG    A+++F EMQ    I PN +S+ S L  C+S+  L  G+ I
Sbjct: 492 NLITWTTMMSGLVQNGFGSGAMMVFREMQ-DVGIRPNSMSITSALSGCTSMALLKHGRAI 550

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           HG+ +R++L+  + +  +++DMY+KCGSLD A+ VF+  S  K+   +++++S Y  HG+
Sbjct: 551 HGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKMCS-TKELYVYNAMISAYASHGQ 609

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA++L+ +M   G  PD IT+  VLSAC   GL+ EG++++  +++  ++KP+ E   
Sbjct: 610 AREALVLFKQMEKEGIVPDHITLTSVLSACSHGGLMKEGIKVFKYMVSELQMKPSEEHYG 669

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+V +L   GQLD AL  I TMP  P   I G+L++A   + + E+ D   K L++L+P+
Sbjct: 670 CLVKLLANDGQLDEALRTILTMPSHPDAHILGSLLTACGQNNDIELADYIAKWLLKLDPD 729

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           N  NYV+LSN+YA+  +WD V+ LR +MK++GL+K PGCSWI +  + H F  +D++HP 
Sbjct: 730 NSGNYVALSNVYAAVGKWDKVSNLRGLMKEKGLRKIPGCSWIEVGQELHVFIASDRSHPK 789

Query: 520 SVSIYEMLDDL 530
           +  IY  LD L
Sbjct: 790 TEEIYVTLDLL 800



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 212/472 (44%), Gaps = 53/472 (11%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLG--HISNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83
            LQ     R+L L  Q H+ ++  G     N FV +KL+  YA CG    +  +F     
Sbjct: 57  LLQGCVYERALPLALQLHADVIKRGPTFALNDFVISKLVILYAKCGASEPATRLFRDSPS 116

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
            +V+ + ++I  + +     EAL  +  M    + PD+F L  + K  G +K +  G  +
Sbjct: 117 PNVFSWAAIIGLHTRTGFCEEALFGYIKMQQDGLPPDNFVLPNVLKACGVLKWVRFGKGV 176

Query: 144 HGLSIK-IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           H   +K IG    V +A SL+ MY KCG   +   +FDEM +RN  +WN           
Sbjct: 177 HAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWN----------- 225

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                                  +M+  Y QNG   EA+ +F EM+L+  +E   V+L  
Sbjct: 226 -----------------------SMVVTYAQNGMNQEAIRVFREMRLQG-VEVTLVALSG 261

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
               C++   +  G+Q HG A+   L  D  L +++++ Y K G ++ A  VF + +  K
Sbjct: 262 FFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAV-K 320

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D +TW+ +V+GY   G   +A+ +   M   G + D +T+  +L+    +  +  G++ +
Sbjct: 321 DVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAADTRDLVLGMKAH 380

Query: 383 NSVINTYRIKPTTE----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
                 Y +K   E    + + ++DM  + G++D A      +  +    +W  +++A  
Sbjct: 381 -----AYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVR-KKDIVLWNTMLAACA 434

Query: 439 MHGNSEMQDLAYKSLIQLEPEN-PSNYVSLSNLYASSRRWDAVAELRTMMKD 489
             G   +   A K   Q++ E+ P N VS ++L     +   VAE R M  +
Sbjct: 435 EQG---LSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAE 483



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 107/503 (21%), Positives = 202/503 (40%), Gaps = 110/503 (21%)

Query: 27  LQVSATHRSLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           L+     + ++  K  H+ ++ ++G     +V+T L+  Y  CG    +  VF+ +  ++
Sbjct: 161 LKACGVLKWVRFGKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERN 220

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
              +NS++  Y +N  + EA+ +F  M    V      L+         + +  G   HG
Sbjct: 221 DVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHG 280

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
           L++  G  +D +L +S+M+ Y K G   E   +F  M  ++V +WN+ ++          
Sbjct: 281 LAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTWNLVVA---------- 330

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                                   GY Q G +++AL +   M+ ++ +  + V+L ++L 
Sbjct: 331 ------------------------GYAQFGMVEKALEMCCVMR-EEGLRFDCVTLSALLA 365

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF---------- 315
             +    L  G + H + ++ +   DV + + +IDMY+KCG +DCARRVF          
Sbjct: 366 VAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVL 425

Query: 316 ------------------------EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
                                   +  S   + ++W+S++ G+  +G+  EA  ++ +M 
Sbjct: 426 WNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMC 485

Query: 352 CLGSKPDIIT-----------------------------------IVGVLSACGRSGLIN 376
             G  P++IT                                   I   LS C    L+ 
Sbjct: 486 SSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLK 545

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G  I+  V+    +  +  I   ++DM  + G LD A    K M       ++ A++SA
Sbjct: 546 HGRAIHGYVMRR-DLSQSIHIITSIMDMYAKCGSLDGAKCVFK-MCSTKELYVYNAMISA 603

Query: 437 SVMHGNSEMQDLAYKSLIQLEPE 459
              HG +    + +K   Q+E E
Sbjct: 604 YASHGQAREALVLFK---QMEKE 623



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 40/284 (14%)

Query: 99  NHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG--FVVD 155
            HG   EA+   + M+  N+        T+ +     + L + + +H   IK G  F ++
Sbjct: 28  KHGRIREAVNSLTQMHSLNLHVGPAIYGTLLQGCVYERALPLALQLHADVIKRGPTFALN 87

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             + + L+ +Y KCG       LF + P  NV                            
Sbjct: 88  DFVISKLVILYAKCGASEPATRLFRDSPSPNV---------------------------- 119

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                 ++W A+I  + + G  +EAL  +++MQ +D + P+   L +VL  C  L  +  
Sbjct: 120 ------FSWAAIIGLHTRTGFCEEALFGYIKMQ-QDGLPPDNFVLPNVLKACGVLKWVRF 172

Query: 276 GKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
           GK +H F ++   L   V +  +L+DMY KCG+++ A +VF++ S   D +TW+S+V  Y
Sbjct: 173 GKGVHAFVVKTIGLKECVYVATSLVDMYGKCGAVEDAGKVFDEMSERND-VTWNSMVVTY 231

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
             +G   EA+ ++ +M   G +  ++ + G  +AC  S  + EG
Sbjct: 232 AQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEG 275


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 180/543 (33%), Positives = 298/543 (54%), Gaps = 9/543 (1%)

Query: 4   SSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILS--LGHISNPFVSTKL 61
           SS      L    +Y      H L   AT  S++   +  +QI++  +  I    ++ K 
Sbjct: 5   SSPLLVITLAVLHDYNHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKF 64

Query: 62  ITAYALCGQPTQSQLVFNS-IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY--SNVS 118
           I   +  G    S L+FN  +   +++ YN+L+  + +++  +  +  F+N     +  +
Sbjct: 65  IGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPN 124

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           PD++T  ++ K    +  +  G  +H    K G   ++ + NSL+ +Y K G       L
Sbjct: 125 PDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKL 184

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           FDEM  R+V SWN  ISG+  SG   +V ++R VFD M  +N+ +W+ MI+GY +N    
Sbjct: 185 FDEMVVRDVVSWNTLISGYCFSG---MVDKARMVFDGMMEKNLVSWSTMISGYARNEKYA 241

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           +A+ LF +MQ +  + PN V+LVSVL  C+ L  L  GK IH F  R ++   + L NAL
Sbjct: 242 DAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNAL 301

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
            DMY+KCG +  A+ VF +    +D I+WS I+ G  ++G  +EA   + +M+  G +P+
Sbjct: 302 ADMYAKCGCVLEAKGVFHEMH-ERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPN 360

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            I+ +G+L+AC  +GL+++GLE ++ +   Y I P  E   CVVD+L RAG+LD+A   I
Sbjct: 361 DISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLI 420

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
            +MP++P+  +WGAL+    ++ ++E  +     +++L+  +  + V L+N+YAS  R D
Sbjct: 421 NSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLD 480

Query: 479 AVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
             A  R  M+D    K+PGCSWI I+   + F + D +HP S+ IY M+ +L   M+ A 
Sbjct: 481 DAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAG 540

Query: 539 ASP 541
             P
Sbjct: 541 YKP 543



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 147/370 (39%), Gaps = 80/370 (21%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           +S   N   L  + N    T    L+  A    +   ++ H  +   G  SN FV   L+
Sbjct: 110 ISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLV 169

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSL------------------------------ 92
             Y   G    +Q +F+ +  +DV  +N+L                              
Sbjct: 170 DLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWST 229

Query: 93  -INGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
            I+GY +N  + +A+ELF  M +   ++P+D TL ++      +  L++G  IH    + 
Sbjct: 230 MISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRN 289

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
              V + L N+L  MY KCG   E   +F EM +R+V SW++ I G A  G         
Sbjct: 290 KIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYG--------- 340

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
                      YA              +EA   F EM ++D +EPN +S + +L  C+  
Sbjct: 341 -----------YA--------------NEAFNFFAEM-IEDGLEPNDISFMGLLTACTHA 374

Query: 271 IGLSGG-------KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
             +  G        Q++G  I  ++ H       ++D+ S+ G LD A  +        +
Sbjct: 375 GLVDKGLEYFDMMPQVYG--ITPKIEH----YGCVVDLLSRAGRLDQAESLINSMPMQPN 428

Query: 324 AITWSSIVSG 333
            I W +++ G
Sbjct: 429 VIVWGALLGG 438


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 193/596 (32%), Positives = 298/596 (50%), Gaps = 79/596 (13%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           +AT+   LQ      +L   KQ H  +   G  S+  +   LI+ Y+  G+   ++ VF+
Sbjct: 234 TATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFD 293

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT---------------- 123
           S+++++   +NS+I+ Y      N+A  LF  +  S++ PD  T                
Sbjct: 294 SMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEE 353

Query: 124 -LATISKLSGE------------------IKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
            L  + ++ GE                  +  LN+G   HG  ++ GF  DV +  SL+ 
Sbjct: 354 VLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLID 413

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----- 219
           MYVK    +    +FD M  RN+ +WN  +SG++  G F     + R+ +QM++      
Sbjct: 414 MYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE---DALRLLNQMEKEGIKPD 470

Query: 220 ----------------------------------NVYAWTAMINGYVQNGDLDEALVLFL 245
                                             NV +WTA+I+G  Q G+  ++L  F 
Sbjct: 471 LVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFA 530

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
           +MQ ++ + PN  S+  +L  C+SL  L  GK+IH  +IR     DV +  ALIDMYSK 
Sbjct: 531 QMQ-QEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKS 589

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
            SL  A +VF     NK   +W+ ++ G+ + G G EA+ ++N+M  +G  PD IT   +
Sbjct: 590 SSLKNAHKVFRRIQ-NKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTAL 648

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           LSAC  SGLI EG + ++S+I  YRI P  E   C+VD+LGRAG LD A D I TMP++P
Sbjct: 649 LSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKP 708

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485
             +IWGAL+ +  +H N +  + A K+L +LEP N +NY+ + NLY+   RW+ +  LR 
Sbjct: 709 DATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRE 768

Query: 486 MMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           +M   G++     SWI I+ + H FS  +K HP +  IY  L  L+  M+     P
Sbjct: 769 LMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVP 824



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 191/391 (48%), Gaps = 10/391 (2%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L  + H  ++  G   + ++   L+  Y  C    ++  VF+ + + +  L+N  I   +
Sbjct: 151 LGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNL 210

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           ++    + +ELF  M +S +  +  T+  + +  G++  LN    IHG   + G   DV 
Sbjct: 211 QSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVS 270

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           L N L+SMY K GK      +FD M  RN  SWN  IS +A+ G    +  +  +F +++
Sbjct: 271 LCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALG---FLNDAWSLFYELE 327

Query: 218 ----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
               + ++  W  +++G+  +G  +E L +   MQ  +  +PN  S+ SVL   S L  L
Sbjct: 328 SSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ-GEGFKPNSSSMTSVLQAISELGFL 386

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           + GK+ HG+ +R   + DV +  +LIDMY K  SL  A+ VF D+  N++   W+S+VSG
Sbjct: 387 NMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVF-DNMKNRNIFAWNSLVSG 445

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y   G   +A+ L N+M   G KPD++T  G++S     G   E L + +    +  + P
Sbjct: 446 YSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQT-KSLGLTP 504

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
                  ++    +AG    +L F   M  E
Sbjct: 505 NVVSWTALISGSSQAGNNRDSLKFFAQMQQE 535



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 133/508 (26%), Positives = 211/508 (41%), Gaps = 79/508 (15%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTK-LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           SL   K  H+Q++ L    NP  + K LI++Y   G    + +VF     ++   +NS +
Sbjct: 45  SLTSVKMMHAQMIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFV 104

Query: 94  NGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
             +  + G  +  LE+F  ++   V  D    +   K    + D+ +GM IHG  IK GF
Sbjct: 105 EEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGF 164

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
            +DV L  +LM+ Y +C    +   +F EMP      WN  I                  
Sbjct: 165 DLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAI------------------ 206

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
                         ++N  +Q+  L + + LF +MQ    ++    ++V VL  C  +  
Sbjct: 207 --------------ILN--LQSEKLQKGVELFRKMQF-SFLKAETATIVRVLQACGKMGA 249

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF----------------- 315
           L+  KQIHG+  R  L+ DVSLCN LI MYSK G L+ ARRVF                 
Sbjct: 250 LNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISS 309

Query: 316 -----------------EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
                            E S    D +TW+ ++SG+ LHG   E + +  +M   G KP+
Sbjct: 310 YAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPN 369

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
             ++  VL A    G +N G E +  V+          +   ++DM  +   L  A    
Sbjct: 370 SSSMTSVLQAISELGFLNMGKETHGYVLRN-GFDCDVYVGTSLIDMYVKNHSLTSAQAVF 428

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN-PSNYVSLSNLYASSRRW 477
             M    +   W +LVS     G   M + A + L Q+E E    + V+ + + +    W
Sbjct: 429 DNMK-NRNIFAWNSLVSGYSFKG---MFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMW 484

Query: 478 DAVAE-LRTMMKDRGLKKSPG-CSWISI 503
               E L  + + + L  +P   SW ++
Sbjct: 485 GCGKEALAVLHQTKSLGLTPNVVSWTAL 512


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 177/555 (31%), Positives = 289/555 (52%), Gaps = 69/555 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L+  A  ++ K  +Q H  +L LG+  + FV T LI+ Y   G+   ++ VF+
Sbjct: 134 SYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFD 193

Query: 80  SIQHKDVYLY-------------------------------NSLINGYVKNHGHNEALEL 108
              H+DV  Y                               N++I+GY +   + EALEL
Sbjct: 194 RSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALEL 253

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           F  M  +N+ PD+ T+ T+     +   + +G  +H      GF  ++ + NSLM +Y K
Sbjct: 254 FKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSK 313

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG+      LF+                                   +  ++V +W  +I
Sbjct: 314 CGELETACGLFE----------------------------------GLLYKDVISWNTLI 339

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--K 286
            GY       EAL+LF EM L+    PN V+++S+LP C+ L  +  G+ IH +  +  K
Sbjct: 340 GGYTHMNLYKEALLLFQEM-LRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
              +  SL  +LIDMY+KCG ++ A +VF +S  +K   +W++++ G+ +HG+   A  +
Sbjct: 399 SATNASSLRTSLIDMYAKCGDIEAAHQVF-NSILHKSLSSWNAMIFGFAMHGRADAAFDI 457

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           +++M  +G +PD IT VG+LSAC RSG+++ G  I+ ++   Y+I P  E   C++D+LG
Sbjct: 458 FSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLG 517

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466
            +G    A + I  M +EP   IW +L+ A  + GN E+ +   ++LI++EPENP  YV 
Sbjct: 518 HSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVL 577

Query: 467 LSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEM 526
           LSN+YA++ RW+ VA++R ++ D+G+KK PGCS I I    H F + DK HP +  IY M
Sbjct: 578 LSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 637

Query: 527 LDDLILIMRGAAASP 541
           L+++ +++  A   P
Sbjct: 638 LEEMEVLLEKAGFVP 652



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 140/487 (28%), Positives = 260/487 (53%), Gaps = 32/487 (6%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC------- 68
           RN+ S ++ H  +   T +SL+L    H+Q++  G  +  +  +KL+    LC       
Sbjct: 32  RNHPSLSLLHNCK---TLQSLRLI---HAQMIKTGLHNTNYALSKLL---ELCVISPHFD 82

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
           G P     VF +IQ  ++ ++N++  G+  +     AL+L+  M    + P+ +T   + 
Sbjct: 83  GLPYAIS-VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLL 141

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           K   + K    G  IHG  +K+G+ +D+ +  SL+S+YV+ G+  +   +FD  P R+V 
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVV 201

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           S+   I G+AS G    +  ++++FD++  ++V +W AMI+GY + G+  EAL LF EM 
Sbjct: 202 SYTALIKGYASRG---YIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEM- 257

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
           +K  I P++ ++V+V+  C+    +  G+Q+H +        ++ + N+L+D+YSKCG L
Sbjct: 258 MKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGEL 317

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
           + A  +FE   + KD I+W++++ GY       EA+LL+ +M+  G +P+ +T++ +L A
Sbjct: 318 ETACGLFEGLLY-KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPA 376

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTE---ICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           C   G I+ G  I+  V    R+K  T    +   ++DM  + G ++ A     ++ +  
Sbjct: 377 CAHLGAIDIGRWIH--VYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHK 433

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSL--IQLEPENPSNYVSLSNLYASSRRWDAVAEL 483
           S S W A++    MHG ++     +  +  I +EP++ + +V L +  + S   D    +
Sbjct: 434 SLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDIT-FVGLLSACSRSGMLDLGRHI 492

Query: 484 -RTMMKD 489
            RTM +D
Sbjct: 493 FRTMTQD 499


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/466 (34%), Positives = 273/466 (58%), Gaps = 5/466 (1%)

Query: 45  QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
            +L  G   + FV    IT    CG+ + +  VFN  + +D+  +NS+I G VK     E
Sbjct: 183 HVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIE 242

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           A++++  M    V P++ T+  +     +++DLN+G   H    + G    + L N+LM 
Sbjct: 243 AIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMD 302

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MYVKCG+      LFD M Q+ + SW   + G+A    F  +  +R +  ++  ++V  W
Sbjct: 303 MYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYAR---FGFLDVAREILYKIPEKSVVPW 359

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            A+I+G VQ     EAL LF EMQ++  IEP+KV++V+ L  CS L  L  G  IH +  
Sbjct: 360 NAIISGCVQAKQGKEALALFHEMQIRT-IEPDKVTMVNCLSACSQLGALDVGIWIHHYIE 418

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R +L+ DV+L  AL+DMY+KCG++  A +VFE+    ++ +TW++++ G  LHG   +A+
Sbjct: 419 RHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP-QRNCLTWTAVICGLALHGNAQDAL 477

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
             ++KM+ +G  PD IT +GVLSAC   GL+ EG + ++ + + + + P  +  +C+VD+
Sbjct: 478 SYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDL 537

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           LGRAG L+ A + +K MP+    ++ GAL  A  ++GN ++ +     L++++P++  NY
Sbjct: 538 LGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNY 597

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           V L+++Y+ ++ W      R +M D+G++K+PGCS + I+G  H F
Sbjct: 598 VLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEF 643



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 209/448 (46%), Gaps = 78/448 (17%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYL 88
           +SL   KQ  +Q++S G I N F +++L+   A C      +L     +   I+  +V+ 
Sbjct: 68  KSLVQLKQIQAQMVSTGLIENGFAASRLV---AFCALSESKELDYCTRILYRIKELNVFS 124

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
           +N+ I GYV++        L+  M     + PD+ T   + K         +G+ + G  
Sbjct: 125 WNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHV 184

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           +K GF  D+ + N+ ++M + CG+ S   ++F++   R++ +WN  I+            
Sbjct: 185 LKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMIT------------ 232

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
                                 G V+ G   EA+ ++ EM+  +++ PN+++++ ++ +C
Sbjct: 233 ----------------------GCVKRGLAIEAIKIYKEME-AEKVRPNEITMIGMISSC 269

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           S +  L+ GK+ H +     L   + L NAL+DMY KCG L  AR +F D+   K  ++W
Sbjct: 270 SQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLF-DNMAQKTLVSW 328

Query: 328 SSIVSGYGLHG-------------------------------KGHEAVLLYNKMVCLGSK 356
           +++V GY   G                               +G EA+ L+++M     +
Sbjct: 329 TTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIE 388

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD +T+V  LSAC + G ++ G+ I++  I  +++     +   +VDM  + G + RAL 
Sbjct: 389 PDKVTMVNCLSACSQLGALDVGIWIHH-YIERHKLSIDVALGTALVDMYAKCGNIARALQ 447

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSE 444
             + +P + +   W A++    +HGN++
Sbjct: 448 VFEEIP-QRNCLTWTAVICGLALHGNAQ 474


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 167/482 (34%), Positives = 273/482 (56%), Gaps = 38/482 (7%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           +L ++ H  ++  G ++   V+  LI  ++  G   ++++VF+ ++ KD+  + ++I+GY
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            KN    +A+E ++ M +  V PD+ T+A++      +  L+ G+++H  + + G    V
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           I+ANSL+ MY KC    + L +F  +P +                               
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNK------------------------------- 461

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
              NV +WT++I G   N    EAL  F +M L   ++PN V+LVSVL  C+ +  LS G
Sbjct: 462 ---NVISWTSIILGLRLNYRSFEALFFFQQMILS--LKPNSVTLVSVLSACARIGALSCG 516

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K+IH  A+R  L  D  L NAL+DMY +CG ++ A   F  +S  KD  +W+ +++GY  
Sbjct: 517 KEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQF--NSCEKDVASWNILLTGYAQ 574

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
            GKG  AV L++KM+     PD IT   +L AC RSG++ +GLE + S+ + + I P  +
Sbjct: 575 QGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLK 634

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             A VVD+LGRAG+L+ A +FIK MP++P P+IWGAL++A  ++ N E+ +LA + + ++
Sbjct: 635 HYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEM 694

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           + ++   Y+ L NLYA S +WD VA +R +M++  L   PGCSW+ + G+ H F   D  
Sbjct: 695 DTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDF 754

Query: 517 HP 518
           HP
Sbjct: 755 HP 756



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 217/436 (49%), Gaps = 41/436 (9%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           ++ H  ++  G  S+  V   LIT Y  CG    ++LVF+ +  +D   +N++I+GY +N
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN 274

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               E L LF  M    V PD  T+ ++      + D  +G  +HG  IK GFV +V + 
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVN 334

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           NSL+ M+                   +VG W+                 +  VF +M+ +
Sbjct: 335 NSLIQMH------------------SSVGCWD----------------EAEMVFSKMEFK 360

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           ++ +WTAMI+GY +NG  ++A+  +  M+  + + P+++++ SVL  C+ L  L  G  +
Sbjct: 361 DLVSWTAMISGYEKNGLPEKAVETYTIME-HEGVVPDEITIASVLSACAGLGLLDKGIML 419

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H FA R  L   V + N+LIDMYSKC  +D A  VF     NK+ I+W+SI+ G  L+ +
Sbjct: 420 HEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRLNYR 478

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+  + +M+ L  KP+ +T+V VLSAC R G ++ G EI+   + T  +     +  
Sbjct: 479 SFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRT-GLGFDGFLPN 536

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            ++DM  R G+++ A +   +   E   + W  L++     G   +    +  +I+ +  
Sbjct: 537 ALLDMYVRCGRMEPAWNQFNS--CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDV- 593

Query: 460 NPSNYVSLSNLYASSR 475
           NP      S L A SR
Sbjct: 594 NPDEITFTSLLCACSR 609



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 181/362 (50%), Gaps = 37/362 (10%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L++ +   G   ++  VF  +  +D++ +N L+ GY K    +EAL L+  M +  + PD
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            +T   + +  G + DL  G  +H   I+ GF  DV + N+L++MYVKCG       +FD
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFD 254

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            MP+R+  SWN                                  AMI+GY +N    E 
Sbjct: 255 RMPRRDRISWN----------------------------------AMISGYFENDVCLEG 280

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF  M+ +  ++P+ +++ SV+  C +L     G+++HG+ I+     +VS+ N+LI 
Sbjct: 281 LRLFFMMR-EFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQ 339

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           M+S  G  D A  VF    F KD ++W++++SGY  +G   +AV  Y  M   G  PD I
Sbjct: 340 MHSSVGCWDEAEMVFSKMEF-KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEI 398

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           TI  VLSAC   GL+++G+ ++     T  +     +   ++DM  +   +D+AL+    
Sbjct: 399 TIASVLSACAGLGLLDKGIMLHEFADRT-GLTSYVIVANSLIDMYSKCRCIDKALEVFHR 457

Query: 421 MP 422
           +P
Sbjct: 458 IP 459



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 156/355 (43%), Gaps = 38/355 (10%)

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           NSLI          +AL    +M    VS ++ T   + +L    +  + G  +H    K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
               + V L N+L+SM+V+ G   E              +W                   
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVE--------------AW------------------- 149

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
             VF +M  R++++W  ++ GY + G  DEAL L+  M L   I P+  +   VL TC  
Sbjct: 150 -YVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRM-LWVGIRPDVYTFPCVLRTCGG 207

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  L+ G+++H   IR     DV + NALI MY KCG +  AR VF D    +D I+W++
Sbjct: 208 LPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVF-DRMPRRDRISWNA 266

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++SGY  +    E + L+  M      PD++T+  V+SAC   G    G E++  VI T 
Sbjct: 267 MISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTG 326

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            +   + +   ++ M    G  D A      M  +   S W A++S    +G  E
Sbjct: 327 FVAEVS-VNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVS-WTAMISGYEKNGLPE 379



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 131/301 (43%), Gaps = 31/301 (10%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           ++ S    S T+   L   A   +L   K+ H+  L  G   + F+   L+  Y  CG+ 
Sbjct: 489 MILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRM 548

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI---S 128
             +   FNS + KDV  +N L+ GY +      A+ELF  M  S+V+PD+ T  ++    
Sbjct: 549 EPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCAC 607

Query: 129 KLSGEIKDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRN 186
             SG + D   G+     +  K     ++    S++ +  + G+  +      +MP   +
Sbjct: 608 SRSGMVTD---GLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPD 664

Query: 187 VGSWNV-----RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
              W       RI  +   G+ +    ++ +F +M  ++V  +  + N Y  +G  DE  
Sbjct: 665 PAIWGALLNACRIYQNVELGELA----AQHIF-EMDTKSVGYYILLCNLYADSGKWDEV- 718

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
                 +++  +  N+   ++V P C S + ++G  Q+H F    + +  +   NA+++ 
Sbjct: 719 -----ARVRKIMRENR---LTVDPGC-SWVEVAG--QVHAFLTGDDFHPQIKEINAVLEG 767

Query: 302 Y 302
           +
Sbjct: 768 F 768


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/492 (33%), Positives = 274/492 (55%), Gaps = 19/492 (3%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T ++  +   G    ++  F  I  +   ++N++I+GYV++    EA ELF  M    + 
Sbjct: 234 TTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIP 293

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSI-------KIGFVVDVILA--NSLMSMYVKC 169
           PD+FT  ++          N G  +HG S+       +  FV +  L   N+L+++Y K 
Sbjct: 294 PDEFTFTSLLSACA-----NAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKS 348

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           GK +    +FD M  ++V SWN  +SG+  SG       + R+F +M  ++  +W  M++
Sbjct: 349 GKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLD---NAARIFKEMPYKSELSWMVMVS 405

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           GYV  G  ++AL LF +M+ +D ++P   +    +  C  L  L  GKQ+H   ++    
Sbjct: 406 GYVHGGLAEDALKLFNQMRSED-VKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFE 464

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
              S  NAL+ MY++CG++  AR VF     N D+++W++++S  G HG G EA+ L+++
Sbjct: 465 ASNSAGNALLTMYARCGAVKDARLVFLVMP-NVDSVSWNAMISALGQHGHGREALELFDQ 523

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           MV  G  PD I+ + +L+AC  +GL+++G + + S+   + I P  +  A ++D+LGRAG
Sbjct: 524 MVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAG 583

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
           ++  A D IKTMP EP+P+IW A++S   ++G+ E+   A   L ++ PE+   Y+ LSN
Sbjct: 584 RIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSN 643

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
            Y+++ RW   A +R +M+DRG+KK PGCSWI +  K H F V D  HP +  +Y  L+ 
Sbjct: 644 TYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEM 703

Query: 530 LILIMRGAAASP 541
           +   MR     P
Sbjct: 704 VGAKMRKLGYVP 715



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 233/490 (47%), Gaps = 55/490 (11%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSI--QHKDVYLYNSLINGYVKNHGHNEALELFSN 111
            P  +T L++AYA+ G+   S   F+S+    +D  L+N++I+ + +      A+ +F +
Sbjct: 88  GPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRS 147

Query: 112 MYYSNVS--PDDFTLATISKLSGEIKDLNVG--MLIHGLSIKIGFVVDVILANSLMSMYV 167
           +  S+ S  PDD++  ++    G++ DL V     +H    K+G    + ++N+L+++Y+
Sbjct: 148 LLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYM 207

Query: 168 KC---GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           KC   G   +   + DEMP+++  +W   + GH   GD   V  +R  F+++       W
Sbjct: 208 KCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGD---VHAARSAFEEIDGEFDVVW 264

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            AMI+GYVQ+G   EA  LF  M  K RI P++ +  S+L  C++      GK +HG  I
Sbjct: 265 NAMISGYVQSGMCAEAFELFRRMVSK-RIPPDEFTFTSLLSACANAGFFLHGKSVHGQFI 323

Query: 285 RKELNH----DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY------ 334
           R + +      + + NAL+ +YSK G +  A ++F DS   KD ++W++I+SGY      
Sbjct: 324 RLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIF-DSMTLKDVVSWNTILSGYIESGCL 382

Query: 335 ------------------------GLHGK-GHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
                                    +HG    +A+ L+N+M     KP   T  G ++AC
Sbjct: 383 DNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAAC 442

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
           G  G +  G +++  ++     + +      ++ M  R G +  A      MP   S S 
Sbjct: 443 GELGALKHGKQLHAHLVQC-GFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVS- 500

Query: 430 WGALVSASVMHGNS-EMQDLAYKSLIQ-LEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
           W A++SA   HG+  E  +L  + + Q + P+  S    L+    +    D      +M 
Sbjct: 501 WNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESME 560

Query: 488 KDRGLKKSPG 497
           +D G+  SPG
Sbjct: 561 RDFGI--SPG 568



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 4/174 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  KQ H+ ++  G  ++      L+T YA CG    ++LVF  + + D   +N++I+
Sbjct: 447 ALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMIS 506

Query: 95  GYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGF 152
             +  HGH  EALELF  M    + PD  +  TI         ++ G      +    G 
Sbjct: 507 A-LGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGI 565

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSL 205
                    L+ +  + G+  E  +L   MP +     W   +SG   +GD  L
Sbjct: 566 SPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMEL 619


>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
 gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
          Length = 528

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 179/519 (34%), Positives = 286/519 (55%), Gaps = 9/519 (1%)

Query: 12  LVTSR-NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCG 69
            V SR  Y + +V H L   A  + L+  ++ H+  ++ G H     VS K+   YA  G
Sbjct: 4   FVASRGRYMNRSVCHHLL--AQCKKLRELQRIHALAIAHGLHPHQQSVSCKIFRCYADFG 61

Query: 70  QPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK 129
           +   ++ +F+ I + D+  + SL++ +++     EA+ LF+ +  +   PD F +     
Sbjct: 62  RVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALS 121

Query: 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189
            S    D  VG  +HGL  ++G   +V++ N+L+ MY +CGKF   + +FD M  ++  +
Sbjct: 122 ASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVT 181

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
           W   + G+        V  +   FDQ+  R+V AWTA+I G+VQ      AL LF  M L
Sbjct: 182 WGSMLHGYIKCAG---VDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVL 238

Query: 250 KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
           +    P  V++V VL  C+ +  L  G+ IHG+  +   + ++ + NAL+DMY+K G ++
Sbjct: 239 EGH-RPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIE 297

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            A  VF++   +KD+ TW++++S   + G G +A+ L+  M+  G  P+ +T V VLSAC
Sbjct: 298 MAFSVFQEVQ-SKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVLSAC 356

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
             SGLI EG+E+++ +   Y+I P  E   C++D+LGR G L+ A   I  M VEP   I
Sbjct: 357 SHSGLIEEGIELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVEPDIVI 416

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489
           W +L+SA ++ GN+ + ++A K +++ EP +   YV L N+YASS +W    E+R  M  
Sbjct: 417 WRSLLSACLVRGNNRLAEIAGKEIVKREPGDDGVYVLLWNMYASSNKWREAREMRQQMLS 476

Query: 490 RGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
             + K PGCSWI I G  H F V DK H     IYE L+
Sbjct: 477 LKIFKKPGCSWIEIDGAVHEFLVEDKTHDARREIYETLE 515


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 163/482 (33%), Positives = 269/482 (55%), Gaps = 37/482 (7%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSP 119
           +I+ YA  G+  +++ +F+ +  +D + + ++ +GYV++  H EALELF  M  + N   
Sbjct: 161 MISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKC 220

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           + FT+++    S  I+ L++G  IHG  ++IG  +D ++ ++L  MY KCG   E     
Sbjct: 221 NKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGE----- 275

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
                                        +R +FD+   R+V +WTAMI+ Y + G  +E
Sbjct: 276 -----------------------------ARHIFDKTVDRDVVSWTAMIDRYFKEGRREE 306

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
              LF ++ LK  I PN+ +   VL  C+       GKQ+HG+  R   +      + L+
Sbjct: 307 GFALFSDL-LKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLV 365

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
            MY+KCG++  ARRVF +     D ++W+S++SGY  +G+  EA+  +  ++  G++PD 
Sbjct: 366 HMYTKCGNIKNARRVF-NGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDH 424

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           IT VGVLSAC  +GL+++GLE ++S+   + +  T +  AC++D+L R+G+L  A D I 
Sbjct: 425 ITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIID 484

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            MP+EP   +W +L+    +HGN ++   A ++L ++EPENP+ Y +L+N+YA++  W  
Sbjct: 485 KMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGG 544

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
           VAE+R +M  RG+ K PG SWI I  + H F V D +H  S  I+E L  L   M+    
Sbjct: 545 VAEVRKVMDARGVVKKPGLSWIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMKEEGY 604

Query: 540 SP 541
            P
Sbjct: 605 VP 606



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 208/410 (50%), Gaps = 16/410 (3%)

Query: 44  SQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHN 103
            Q+  +G I   F   + I + +   QP  S+   ++   K     + L+    K++   
Sbjct: 4   EQVYKVGKILKLFSPRRAICSSSTTSQPQLSKPPIHNTFFKSG-AKDELVKRLCKDNNFK 62

Query: 104 EALELFSNMYYSNVS---------PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           EA+++         +         P   T +T+ +L  +++ L+ GM +H  +   GFV 
Sbjct: 63  EAIDILCEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVP 122

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
            V+++N ++ MY+KC        LFDEM +R++ SWN+ ISG+A +G       +R++FD
Sbjct: 123 GVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQ---EARKLFD 179

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           QM  R+ ++WTAM +GYV++   +EAL LF  MQ  +  + NK ++ S L   +++  L 
Sbjct: 180 QMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLH 239

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK+IHG  +R  L+ D  + +AL DMY KCGS+  AR +F D + ++D ++W++++  Y
Sbjct: 240 LGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIF-DKTVDRDVVSWTAMIDRY 298

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
              G+  E   L++ ++  G  P+  T  GVL+AC        G +++   +      P+
Sbjct: 299 FKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHG-YMTRIGFDPS 357

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +   + +V M  + G +  A      MP  P    W +L+S    +G  +
Sbjct: 358 SFAASTLVHMYTKCGNIKNARRVFNGMP-RPDLVSWTSLISGYAQNGQPD 406



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 134/312 (42%), Gaps = 48/312 (15%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           +SL L K+ H  IL +G   +  V + L   Y  CG   +++ +F+    +DV  + ++I
Sbjct: 236 QSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMI 295

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           + Y K     E   LFS++  S + P++FT + +     +     +G  +HG   +IGF 
Sbjct: 296 DRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFD 355

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
                A++L+ MY KCG       +F+ MP+ ++ SW   IS                  
Sbjct: 356 PSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLIS------------------ 397

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                           GY QNG  DEAL  F E+ LK   +P+ ++ V VL  C+    +
Sbjct: 398 ----------------GYAQNGQPDEALQ-FFELLLKSGTQPDHITFVGVLSACTHAGLV 440

Query: 274 SGG-------KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
             G       K+ HG      L H       LID+ S+ G L  A  + +      D   
Sbjct: 441 DKGLEYFDSIKEKHG------LTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFL 494

Query: 327 WSSIVSGYGLHG 338
           W+S++ G  +HG
Sbjct: 495 WASLLGGCRIHG 506



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 2/216 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L   A H + +L KQ H  +  +G   + F ++ L+  Y  CG    ++ VFN +
Sbjct: 325 TFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGM 384

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
              D+  + SLI+GY +N   +EAL+ F  +  S   PD  T   +         ++ G+
Sbjct: 385 PRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGL 444

Query: 142 -LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHAS 199
                +  K G          L+ +  + G+  E  ++ D+MP + +   W   + G   
Sbjct: 445 EYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRI 504

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
            G+  L  R+     +++  N   +T + N Y   G
Sbjct: 505 HGNLKLAKRAAEALFEIEPENPATYTTLANIYATAG 540


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 261/465 (56%), Gaps = 36/465 (7%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F  +  KD+  +N++I G  +N  + E L +   M  +N+ PD FTL+++  L  E  D
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVD 315

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           ++ G  IHG SI+ G   +V +A+SL+ MY KC +                         
Sbjct: 316 ISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTR------------------------- 350

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                    VV S RVF  +  R+  +W ++I G VQNG  DE L  F +M L  +I+P 
Sbjct: 351 ---------VVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQM-LMAKIKPK 400

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
             S  S++P C+ L  L  GKQ+HG+  R   + ++ + ++L+DMY+KCG++  AR++F+
Sbjct: 401 SYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFD 460

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
                +D ++W++++ G  LHG   +A+ L+ +M   G +P+ +  + VL+AC  +GL++
Sbjct: 461 RMRL-RDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVD 519

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           E  + +NS+   + I P  E  A V D+LGRAG+L+ A DFI  MP+ P+ S+W  L+SA
Sbjct: 520 EAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSA 579

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N +M +     +++++P+N   Y+ L+N+Y+++RRW   A+ R  ++  G++K+P
Sbjct: 580 CRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTP 639

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            CSWI +  K + F   D++HPC   I E ++ L+ +M      P
Sbjct: 640 ACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGYVP 684



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/482 (23%), Positives = 212/482 (43%), Gaps = 62/482 (12%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T A V   L+   + +S    +Q H+Q+L     S+    + L++ Y+       S  +F
Sbjct: 7   TEALVNSLLRNPLSIKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINLLHDSLRLF 65

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           N++       + S+I  Y  +   +++L  F  M  S + PD     ++ K    + DLN
Sbjct: 66  NTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLN 125

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE-------CLNLFDEMPQRN----- 186
           +G  +HG  I++G   D+   N+LM+MY K     +          + DEM +R      
Sbjct: 126 LGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRT 185

Query: 187 ----VGSWNVRISG-HASSGDFSLVVRS-------------------------------- 209
               VG+   ++S   A + D S   R                                 
Sbjct: 186 ASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKDIS 245

Query: 210 --------RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                   R++F+ M  +++ +W  +I G  +NG   E L +  EM   + ++P+  +L 
Sbjct: 246 HSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGAN-LKPDSFTLS 304

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVLP  +  + +S GK+IHG +IR+ L+ +V + ++LIDMY+KC  +  + RVF   +  
Sbjct: 305 SVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLT-E 363

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D I+W+SI++G   +G   E +  + +M+    KP   +   ++ AC     ++ G ++
Sbjct: 364 RDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQL 423

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  +           I + +VDM  + G +  A      M +    S W A++    +HG
Sbjct: 424 HGYITRN-GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVS-WTAMIMGCALHG 481

Query: 442 NS 443
           ++
Sbjct: 482 HA 483



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 121/260 (46%), Gaps = 11/260 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L + A +  +   K+ H   +  G  +  +V++ LI  YA C +   S  VF 
Sbjct: 300 SFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFT 359

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  +D   +NS+I G V+N   +E L+ F  M  + + P  ++ ++I      +  L++
Sbjct: 360 LLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHL 419

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG   + GF  ++ +A+SL+ MY KCG       +FD M  R++ SW   I G A 
Sbjct: 420 GKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCAL 479

Query: 200 SGDFSLVVRSRRVFDQMKRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
            G     + +  +F+QMK      N  A+ A++      G +DEA   F  M L   I P
Sbjct: 480 HGH---ALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAP 536

Query: 256 NKVSLVSVLPTCSSLIGLSG 275
                V      S L+G +G
Sbjct: 537 G----VEHYAAVSDLLGRAG 552


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/490 (34%), Positives = 277/490 (56%), Gaps = 9/490 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ H Q+L  G I +    ++L+T YA       T +++VF+ I   +  ++N++I  Y 
Sbjct: 28  KQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYS 87

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
            ++   EAL L+  M + ++  + +T   + K    +  L     IH   IK GF  +V 
Sbjct: 88  NSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVY 147

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
             NSL+ +Y   G       LFD +P R++ SWN  I G+   G+  +   + ++F  M 
Sbjct: 148 ATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEM---AYKIFQAMP 204

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            +NV +WT+MI G+V+ G   EAL L  +M L   I+P+K++L   L  C+ L  L  GK
Sbjct: 205 EKNVISWTSMIVGFVRTGMHKEALCLLQQM-LVAGIKPDKITLSCSLSACAGLGALEQGK 263

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI-TWSSIVSGYGL 336
            IH +  + ++  D  L  ALIDMY KCG +  A  VF  S   K  + TW++I+ G+ +
Sbjct: 264 WIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVF--SKLEKKCVYTWTAIIGGFAV 321

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HGKG EA+  + +M   G KP   T   VL+AC  +GL+ EG  ++ S+   Y +KP  E
Sbjct: 322 HGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVME 381

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
              C+VD+LGRAG L  A +F+++MP++P+ +IWG+L++A  +H + E+     K LI+L
Sbjct: 382 HYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIEL 441

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           +PE+   Y+ L++++A++  WD  +++R+ +K++GL   PGCS I+++G  H F    + 
Sbjct: 442 DPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLNGVAHEFFAGAEP 501

Query: 517 HPCSVSIYEM 526
           HP    +Y+M
Sbjct: 502 HPHVREMYDM 511



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 140/356 (39%), Gaps = 75/356 (21%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           + + T    L+  +   +L  T Q H QI+  G  S  + +  L+  YA+ G    + ++
Sbjct: 109 HNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVL 168

Query: 78  FNSIQHKDVYLYNSLINGYVK-------------------------------NHGHNEAL 106
           F+ +  +D+  +N++I+GY+K                                  H EAL
Sbjct: 169 FDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEAL 228

Query: 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
            L   M  + + PD  TL+        +  L  G  IH    K    +D +L  +L+ MY
Sbjct: 229 CLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMY 288

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
           VKCG+  + L +F ++ ++ V +W                                  TA
Sbjct: 289 VKCGEMKKALLVFSKLEKKCVYTW----------------------------------TA 314

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG----- 281
           +I G+  +G   EAL  F +MQ K  I+P   +  +VL  CS    +  GK +       
Sbjct: 315 IIGGFAVHGKGSEALDWFTQMQ-KAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTF 373

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           + ++  + H       ++D+  + G L  A+   E      +A  W S+++   LH
Sbjct: 374 YNMKPVMEH----YGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLH 425


>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
 gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 164/446 (36%), Positives = 261/446 (58%), Gaps = 6/446 (1%)

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
           H+   L ++LI   ++   H +     +      V P  +  A     S  ++   +G  
Sbjct: 40  HRHPRLVSALILASLRLVPHPQQTSDHAAALLRRVHPSVYLRAAARLPSHLLRRSLLGPQ 99

Query: 143 IHGLSIKIGFVV-DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           +H L ++ G V  D  ++ SL+ +Y  C   ++  ++F EM  R+V +WNV I+G+  +G
Sbjct: 100 LHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGYVKAG 159

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D +    +R +FD M  RNV +WT +I GY Q    +EA+ +F  MQ++  IEP+ V+L+
Sbjct: 160 DLA---HARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEG-IEPDGVALL 215

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVL  C  L  +  G+ +H F +R+ L  ++ L N++IDMY KCG ++ A  VFE     
Sbjct: 216 SVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGME-E 274

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K  +TW+++++G+ LHG G +AV ++ +M      P+ +T + +LSAC   GL + G   
Sbjct: 275 KSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWY 334

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +N +++ YRIKP  E   C+VD+LGRAG L  A D +K MP++ + +IWGAL++AS  HG
Sbjct: 335 FNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHG 394

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           ++++ + A   LI+LEP N  NY+ LSN++A   RWD V++LR  MK+RGL+  PG S I
Sbjct: 395 DADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGLRNVPGASSI 454

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEML 527
            + G  H F+  D +HP    I E+L
Sbjct: 455 EVDGMVHEFTSRDGSHPFLHKICEVL 480



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 154/353 (43%), Gaps = 82/353 (23%)

Query: 34  RSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL 92
           RSL L  Q HS +L  GH+ S+  VS  L+  Y  C     ++ VF+ +  +DV  +N +
Sbjct: 93  RSL-LGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVM 151

Query: 93  INGYVKN----HGHN---------------------------EALELFSNMYYSNVSPDD 121
           I GYVK     H                              EA+E+F  M    + PD 
Sbjct: 152 IAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDG 211

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
             L ++    G++  +++G  +H   ++ G   ++ L NS++ MY+KCG   + + +F+ 
Sbjct: 212 VALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEG 271

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           M +++V +W   I+G A  G   L +++  +F +M+R N                     
Sbjct: 272 MEEKSVVTWTTLIAGFALHG---LGLQAVEMFRRMEREN--------------------- 307

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG-GK-----QIHGFAIRKELNHDVSLC 295
                      + PN V+ +++L  CS  +GL+  G+      +  + I+ ++ H     
Sbjct: 308 -----------MAPNDVTFLAILSACSH-VGLTDLGRWYFNIMVSQYRIKPQVEH----Y 351

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHEAVL 345
             ++D+  + G L  A+ + +D     +A  W ++++    HG    G EA++
Sbjct: 352 GCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHGDADLGEEALV 404


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 171/497 (34%), Positives = 268/497 (53%), Gaps = 36/497 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    +  +A    L + K  H  IL  G   +  + T LI  Y  CG    +  +F  +
Sbjct: 249 TFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGM 308

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            HKDV  + ++I+G V+N   + A+ +F  M  S V P   T+A++     E+    +G 
Sbjct: 309 MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGT 368

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HG  ++    +D+   NSL++MY KCG   +                           
Sbjct: 369 SVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQ--------------------------- 401

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  S  VFD+M RR++ +W A+++G+ QNG L +AL+LF EM+ K R  P+ +++V
Sbjct: 402 -------SCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMR-KARQRPDSITVV 453

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C+S+  L  GK IH F  +  L   + +  AL+DMYSKCG L  A++ F D    
Sbjct: 454 SLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCF-DRMPQ 512

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D ++WSSI++GYG HGKG  A+ +Y+  +  G +P+ +  + +LSAC  +GL+++GL  
Sbjct: 513 QDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSF 572

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++S+   + I+P  E  AC+VD+L RAG+++ A  F K M  +PS  + G L+ A    G
Sbjct: 573 FHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTG 632

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E+ D+  + ++ L+P N  NYV L++ YAS +RWD V E+ T MK   LKK PG S+I
Sbjct: 633 NVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFI 692

Query: 502 SIHGKTHCFSVADKAHP 518
            +HG    F     +HP
Sbjct: 693 ELHGTITTFFTDHSSHP 709



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/520 (25%), Positives = 248/520 (47%), Gaps = 76/520 (14%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H +++  G+ S+ +++T LI  Y+  G    ++ VF+++  ++V  + ++I  Y +   H
Sbjct: 71  HQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEH 130

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           + A  +++ M    + P   T+  +  LSG ++ +++  L H   I+ GF  DV LANS+
Sbjct: 131 DVAFSMYNIMRRQGIQPSSVTM--LGLLSGVLELVHLQCL-HACVIQYGFGSDVALANSM 187

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD----FSLVVR--------SR 210
           +++Y KCG+  +   LF+ M  R+V SWN  +SG+A  G+      L++R         +
Sbjct: 188 LNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQ 247

Query: 211 RVFDQMK------------------------RRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           + F  +                          ++ +  T++I  Y++ G+++ A  +F  
Sbjct: 248 QTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEG 307

Query: 247 M------------------------------QLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           M                               LK R+ P+  ++ SVL  C+ L     G
Sbjct: 308 MMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLG 367

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
             +HG+ +R+ +  D+   N+L+ MY+KCG L+ +  VF+  S  +D ++W++IVSG+  
Sbjct: 368 TSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS-RRDIVSWNAIVSGHAQ 426

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           +G   +A+LL+N+M     +PD IT+V +L AC   G +++G  I+N V  +  + P   
Sbjct: 427 NGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSC-LGPCIL 485

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           I   +VDM  + G L  A      MP +   S W ++++    HG  E     Y   +  
Sbjct: 486 IDTALVDMYSKCGDLGSAQKCFDRMPQQDLVS-WSSIIAGYGSHGKGETALRMYSDFLHT 544

Query: 457 EPENPSNYVSLSNLYASSRRW---DAVAELRTMMKDRGLK 493
             + P++ + LS L A S        ++   +M KD G++
Sbjct: 545 GIQ-PNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIE 583



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 168/367 (45%), Gaps = 41/367 (11%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           YN++IN         + L  +S+M  ++  PD  T  ++ K    +   + G+  H   I
Sbjct: 16  YNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVI 75

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
             G+  D  +A SL++ Y K G                          H  S        
Sbjct: 76  VDGYSSDSYIATSLINFYSKFG--------------------------HNQS-------- 101

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           +R+VFD M  RNV  WT MI  Y + G+ D A  ++  M+ +  I+P+ V+++ +L    
Sbjct: 102 ARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMR-RQGIQPSSVTMLGLLSGVL 160

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            L+ L   + +H   I+     DV+L N+++++Y KCG ++ A+ +FE     +D I+W+
Sbjct: 161 ELVHL---QCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMD-ARDVISWN 216

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           S+VSGY   G   E + L  +M   G +PD  T   ++SA      +  G  ++  ++  
Sbjct: 217 SLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRA 276

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
             ++  + I   ++ M  + G ++ A    + M  +   S W A++S  V +  ++M   
Sbjct: 277 -GLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVIS-WTAMISGLVQNDCADMAVT 334

Query: 449 AYKSLIQ 455
            ++ +++
Sbjct: 335 VFRRMLK 341



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 124/280 (44%), Gaps = 33/280 (11%)

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           ++ A+IN     G   + L+ +  M L     P+  +  S++  C+SL   S G   H  
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSM-LSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQR 73

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            I    + D  +  +LI+ YSK G    AR+VF D+  +++ + W++++  Y   G+   
Sbjct: 74  VIVDGYSSDSYIATSLINFYSKFGHNQSARKVF-DTMDDRNVVPWTTMIGCYTRAGEHDV 132

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSA--------CGRSGLINEG----LEIYNSVINTYR 390
           A  +YN M   G +P  +T++G+LS         C  + +I  G    + + NS++N Y 
Sbjct: 133 AFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYC 192

Query: 391 IKPTTEICACVVDM------------------LGRAGQLDRALDFIKTMPVEPSPSIWGA 432
                E    + ++                  LG   ++ + L  +KT  +EP    +G+
Sbjct: 193 KCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGS 252

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNY-VSLSNLY 471
           LVSA+ M     +  + +  +++   E  S+   SL  +Y
Sbjct: 253 LVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMY 292


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 182/550 (33%), Positives = 289/550 (52%), Gaps = 42/550 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+ + L   A   +  + ++ HS ++ LG  S   V+  ++  Y  CG    ++ VF
Sbjct: 161 TQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVF 220

Query: 79  NSIQHK-----------DVYL--------------------YNSLINGYVKNHGHNEALE 107
             +  +           D +L                    +N++I GY +N  + +AL 
Sbjct: 221 ERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALW 280

Query: 108 LFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
            FS M  YS ++PD+FT+ ++      +  +++G  +H   ++        + N+L+SMY
Sbjct: 281 FFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMY 340

Query: 167 VKCGKFSECLNLFDE--MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
            K G       +  +  M   NV S+   + G+   GD      +R +FD M  R+V AW
Sbjct: 341 AKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMK---HAREMFDVMSNRDVVAW 397

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           TAMI GY QNG  DEA+ LF  + ++   EPN  ++ +VL  C+SL  L  GKQIH  AI
Sbjct: 398 TAMIVGYEQNGHNDEAMELF-RLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAI 456

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R       S+ N+++ MY++ GSL  ARRVF+   + K+ +TW+S++     HG G +AV
Sbjct: 457 RSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAV 516

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+ +M+ +G KPD IT VGVLSAC   G ++EG   +  + + + I P     AC+VD+
Sbjct: 517 GLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDL 576

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           L RAG    A +FI+ MPVEP    WG+L+SA  +H N+++ +LA + L+ ++P N   Y
Sbjct: 577 LARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAY 636

Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
            +LSN+Y++  RW+  A++    KD+ +KK  G SW  I  + H F   D  HP   ++Y
Sbjct: 637 SALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVY 696

Query: 525 ----EMLDDL 530
               +M DD+
Sbjct: 697 RTAAKMWDDI 706



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 201/423 (47%), Gaps = 36/423 (8%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    L++ YA  G+   ++ VF  +  +D   +  ++ G  +     EA+++F +M 
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
              +SP  FTL  +       +   VG  +H   +K+G    V +ANS+++MY KCG   
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAE 214

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
               +F+ MP+R+V SWN  +S  A  G   L +    +F+ M  R + +W A+I GY Q
Sbjct: 215 TARAVFERMPERSVSSWNAMVSLDAHLGRMDLAL---SLFENMPDRTIVSWNAVIAGYNQ 271

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           NG   +AL  F  M     + P++ ++ SVL  C++L  +S GKQ+H + +R  + +   
Sbjct: 272 NGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQ 331

Query: 294 LCNALIDMYSKCGSLDCARRVFEDS--------SF------------------------N 321
           + NALI MY+K GS++ AR V + +        SF                        N
Sbjct: 332 VTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSN 391

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D + W++++ GY  +G   EA+ L+  M+  G +P+  T+  VLS C     +  G +I
Sbjct: 392 RDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQI 451

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +   I + + + ++ +   +V M  R+G L  A      +        W +++ A   HG
Sbjct: 452 HCKAIRSLQ-EQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHG 510

Query: 442 NSE 444
             E
Sbjct: 511 LGE 513



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 163/313 (52%), Gaps = 43/313 (13%)

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMY-----VKCGKFSECLNLFDEMP--QRNVGSWNV 192
           G  IH  ++K G +    L N+L+S Y        G F E   LFDE+P  QRNV +WN 
Sbjct: 42  GRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTWNS 101

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            +S +A SG  +    +R VF +M  R+  +WT M+ G  + G   EA+ +FL+M + D 
Sbjct: 102 LLSLYAKSGRLA---DARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDM-VTDG 157

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           + P + +L +VL +C++      G+++H F ++  L+  V + N++++MY KCG  + AR
Sbjct: 158 LSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETAR 217

Query: 313 RVFED------SSFN------------------------KDAITWSSIVSGYGLHGKGHE 342
            VFE       SS+N                        +  ++W+++++GY  +G   +
Sbjct: 218 AVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAK 277

Query: 343 AVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           A+  +++M+   +  PD  TI  VLSAC   G+++ G +++  ++ + R+    ++   +
Sbjct: 278 ALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRS-RMPYIGQVTNAL 336

Query: 402 VDMLGRAGQLDRA 414
           + M  ++G ++ A
Sbjct: 337 ISMYAKSGSVENA 349



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 41/211 (19%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL------------------------ 298
           +L  C +      G+ IH  A++  L     LCN L                        
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 299 --------------IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
                         + +Y+K G L  AR VF +    +D ++W+ +V G    G+  EA+
Sbjct: 89  IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMP-ERDPVSWTVMVVGLNRVGRFGEAI 147

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            ++  MV  G  P   T+  VLS+C  +     G ++++ V+    +     +   V++M
Sbjct: 148 KMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVK-LGLSSCVPVANSVLNM 206

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            G+ G  + A    + MP E S S W A+VS
Sbjct: 207 YGKCGDAETARAVFERMP-ERSVSSWNAMVS 236


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/503 (33%), Positives = 271/503 (53%), Gaps = 15/503 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALC-GQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
           KQ  + +++LGH    F + KL+    L     + ++ +F+ ++  +VYLY ++I  Y  
Sbjct: 72  KQLQAFLITLGHAQTHFYAFKLLRFCTLALSNLSYARFIFDHVESPNVYLYTAMITAYAS 131

Query: 99  NHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           +  H  AL L+ NM       P+ F    + K   ++       ++H   ++ GF    +
Sbjct: 132 HSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMVHCQVLRSGFEQYPV 191

Query: 158 LANSLMSMYVKCGKFSECLNL-FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           +  +L+  Y++     E   L FDEM +RNV SW   ISG+   G     V    +F++M
Sbjct: 192 VQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVL---LFEEM 248

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEM------QLKDRIEPNKVSLVSVLPTCSSL 270
             R+V +W A+I GY QNG   EAL LF  M             PN+V+ V  L  C   
Sbjct: 249 PERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHT 308

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  GK IHG+  R  L  D  + NAL+DMY KCG L  ARRVF D +  +   +W+S+
Sbjct: 309 GMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVF-DRTLERSLTSWNSM 367

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           ++   LHG+   A+ ++ +M+  GS  KPD +T +G+L+AC   GL+ +G   +  +   
Sbjct: 368 INCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQN 427

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           Y I+P  E   C+VD+LGRAGQ + A++ ++ M +EP   IWG+L++   +HG++++ + 
Sbjct: 428 YGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEF 487

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
           + K LI ++P N    + L+N+Y    +WD V ++R ++K++   K+PGCSWI I  + H
Sbjct: 488 SIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHKTPGCSWIEIDNQVH 547

Query: 509 CFSVADKAHPCSVSIYEMLDDLI 531
            F   DK HP +  IY  L+ LI
Sbjct: 548 QFYSVDKTHPRTEEIYNTLESLI 570



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 18/215 (8%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L+L K  H  +   G   + FVS  L+  Y  CG   +++ VF+    + +  +NS+IN 
Sbjct: 311 LRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINC 370

Query: 96  YVKNHGHNEALELFSNMYY--SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK-IGF 152
              +     A+ +F  M    S V PD+ T   +         +  G L   L  +  G 
Sbjct: 371 LALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGI 430

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEM---PQRNVGSW-----NVRISGHASSGDFS 204
              +     L+ +  + G+F E + +   M   P   +  W       +I GH    +FS
Sbjct: 431 EPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVI--WGSLLNGCKIHGHTDLAEFS 488

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           +    +++ D       Y    + N Y + G  DE
Sbjct: 489 I----KKLIDMDPNNGGYG-IMLANIYGELGKWDE 518


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/509 (33%), Positives = 274/509 (53%), Gaps = 46/509 (9%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY-------------------------- 89
           F+   L+ AYAL   P ++  VF+++ H+D + Y                          
Sbjct: 90  FLPNTLLRAYALNALPREAVAVFSAMPHRDSFTYSFLIKALSSAGVAPLRAVHSHVVKLG 149

Query: 90  --------NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
                   N+LI+ Y KN G ++A ++F  M   +V   +  +A + +  GE++     M
Sbjct: 150 SIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVR-QGEVEGAR-RM 207

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
               L        D +  N+L+  Y K G   E   LF  MP+RNV SW+  +SG+   G
Sbjct: 208 FDEMLE------KDTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKG 261

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D  +   +R +FD+M  +N+  WT M++   QNG ++EA  LF +M+ +  +E +  ++V
Sbjct: 262 DMEM---ARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMK-EASVELDVAAVV 317

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C+    L+ GK+IH +   ++L     +CNALIDM+ KCG ++ A  VF+     
Sbjct: 318 SILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVE 377

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD+++W++I+ G+ +HG G +A+  + +M   G  PD +T++ VLSAC   G + EG   
Sbjct: 378 KDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRY 437

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + ++   Y + P  E   C++D+LGR G +  A+D IK+MP +P+  IWG+L+SA  +H 
Sbjct: 438 FANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHK 497

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N E  ++A   L +L+P N  NY  LS++YA + +W  +A+ R  MK  G +KS G SWI
Sbjct: 498 NVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGSSWI 557

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            +    H F+V D+ HP S  I EM+D L
Sbjct: 558 ELDEAFHEFTVGDRKHPDSDQISEMVDRL 586


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 287/513 (55%), Gaps = 39/513 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNS 91
           R +   K+     L LG  SN  V T LI   + CG   +++ +FNS  I  +    +N+
Sbjct: 286 RDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNA 345

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I+GY+++  + +ALELF+ M  +++  D +T  ++      +K L++G  +H  +IK G
Sbjct: 346 MISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSG 405

Query: 152 FVVDVI-LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
             V+ + ++N++ + Y KCG   +                                   R
Sbjct: 406 LEVNYVSISNAVANAYAKCGSLEDV----------------------------------R 431

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           +VF++M+ R++ +WT+++  Y Q  + D+A+ +F  M+  + I PN+ +  SVL +C++L
Sbjct: 432 KVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMR-AEGIAPNQFTFSSVLVSCANL 490

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G+Q+HG   +  L+ D  + +AL+DMY+KCG L  A++VF   S N D ++W++I
Sbjct: 491 CLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAI 549

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++G+  HG   +A+ L+ +MV LG +P+ +T + VL AC   GL+ EGL+ +  +  TY 
Sbjct: 550 IAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYG 609

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           + P  E  AC+VD+L R G L+ A++FI  MPVEP+  +W  L+ A  +HGN E+ +LA 
Sbjct: 610 LVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAA 669

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + ++  + EN + YV LSN Y  S  +     LR +MK++G+KK PGCSWIS++G  H F
Sbjct: 670 QKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKF 729

Query: 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
              D+ HP    IY  L++L L +      P L
Sbjct: 730 YAGDQQHPEKDKIYAKLEELKLKLISLDDVPDL 762



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 217/510 (42%), Gaps = 86/510 (16%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LK    +H  ++ L H+++         AY+ C     +  +F+ +  ++ + +  LI G
Sbjct: 95  LKSKFSNHHSLVLLNHVAH---------AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAG 145

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
             +N    +  E F  M    + PD F  + I ++   +  + +G ++H   +  GF   
Sbjct: 146 LAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSH 205

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS----GDFSLVVRSR- 210
             ++ +L++MY K  +  +   +F+ M + NV SWN  I+G  S+      F L +R   
Sbjct: 206 TFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMG 265

Query: 211 --------------------RVFDQMKRRNVYAW-----------TAMINGYVQNGDLDE 239
                               R  ++ K  + YA            TA+I+   + G L E
Sbjct: 266 EGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQE 325

Query: 240 A---------------------------------LVLFLEMQLKDRIEPNKVSLVSVLPT 266
           A                                 L LF +M   D I  +  +  SV   
Sbjct: 326 ARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQND-IYLDHYTYCSVFNA 384

Query: 267 CSSLIGLSGGKQIHGFAIRK--ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            ++L  LS GK++H  AI+   E+N+ VS+ NA+ + Y+KCGSL+  R+VF     ++D 
Sbjct: 385 IAALKCLSLGKKVHARAIKSGLEVNY-VSISNAVANAYAKCGSLEDVRKVFNRME-DRDL 442

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           I+W+S+V+ Y    +  +A+ +++ M   G  P+  T   VL +C    L+  G +++  
Sbjct: 443 ISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVH-G 501

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +I    +     I + +VDM  + G L  A      +    + S W A+++    HG  +
Sbjct: 502 IICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVS-WTAIIAGHAQHGIVD 560

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
                ++ ++QL  E P+    L  L+A S
Sbjct: 561 DALQLFRRMVQLGVE-PNAVTFLCVLFACS 589



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 141/314 (44%), Gaps = 45/314 (14%)

Query: 31  ATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
           A  + L L K+ H++ +  G  ++   +S  +  AYA CG     + VFN ++ +D+  +
Sbjct: 386 AALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISW 445

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
            SL+  Y +    ++A+E+FSNM    ++P+ FT +++      +  L  G  +HG+  K
Sbjct: 446 TSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICK 505

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           +G  +D  + ++L+ MY KCG   +   +F+ +   +  SW   I+GHA           
Sbjct: 506 VGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHA----------- 554

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
                                  Q+G +D+AL LF  M ++  +EPN V+ + VL  CS 
Sbjct: 555 -----------------------QHGIVDDALQLFRRM-VQLGVEPNAVTFLCVLFACSH 590

Query: 270 LIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
              +  G Q        + +  E+ H       ++D+ S+ G L+ A           + 
Sbjct: 591 GGLVEEGLQYFKLMKKTYGLVPEMEHYA----CIVDLLSRVGHLNDAMEFISRMPVEPNE 646

Query: 325 ITWSSIVSGYGLHG 338
           + W +++    +HG
Sbjct: 647 MVWQTLLGACRVHG 660



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 139/299 (46%), Gaps = 17/299 (5%)

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           R+FDQM +RN ++WT +I G  +NG   +    F EMQ    I P++ +   +L  C  L
Sbjct: 126 RLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQ-SQGIFPDQFAYSGILQICIGL 184

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             +  G  +H   + +       +  AL++MY+K   ++ + +VF ++    + ++W+++
Sbjct: 185 DSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVF-NTMTEVNVVSWNAM 243

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++G+  +    +A  L+ +M+  G  PD  T +GV  A G    +N+  E+    +    
Sbjct: 244 ITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALEL-G 302

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS-PSIWGALVSASVMHGNSEMQDLA 449
           +   T +   ++DM  + G L  A     +  +     + W A++S  +  G +E     
Sbjct: 303 VDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNE----- 357

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM-----MKDRGLKKSPGCSWISI 503
               ++L  +   N + L + Y     ++A+A L+ +     +  R +K     +++SI
Sbjct: 358 --KALELFAKMCQNDIYLDH-YTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSI 413



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 15/190 (7%)

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL--NHDVSLCNALIDMYSKCGSLD 309
           +I+P    LV +L  C     L   K +HGF ++ +   +H + L N +   YSKC  +D
Sbjct: 67  QIQP----LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDID 122

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            A R+F+  S  ++  +W+ +++G   +G   +    + +M   G  PD     G+L  C
Sbjct: 123 AACRLFDQMS-QRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQIC 181

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTE---ICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
              GL  + +E+ N V     I+  T    +   +++M  +  +++ +     TM  E +
Sbjct: 182 --IGL--DSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM-TEVN 236

Query: 427 PSIWGALVSA 436
              W A+++ 
Sbjct: 237 VVSWNAMITG 246


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/516 (34%), Positives = 271/516 (52%), Gaps = 39/516 (7%)

Query: 27  LQVSATHRSLKLTKQSH-SQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           LQ  A    + L +  H S + +  H    F +T L+  YA CG    + LVF+ +  + 
Sbjct: 5   LQACANCGDVSLGRAVHGSGVKACVHWKTTFCNT-LLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           V  + SLI  Y +    +EA+ LF  M    VSPD FT+ T+         L  G  +H 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
              +     ++ + N+LM MY KCG   +  ++F EMP +++ S                
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIIS---------------- 167

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                             W  MI GY +N   +EAL LF +M L+  ++P+  +L  +LP
Sbjct: 168 ------------------WNTMIGGYSKNSLPNEALSLFGDMVLE--MKPDGTTLACILP 207

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C+SL  L  GK++HG  +R     D  + NAL+DMY KCG    AR +F D    KD I
Sbjct: 208 ACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLF-DMIPTKDLI 266

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           TW+ +++GYG+HG G+ A+  +N+M   G +PD ++ + +L AC  SGL++EG   +N +
Sbjct: 267 TWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVM 326

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
            +   +KP  E  AC+VD+L R+G+L  A  FIK+MP+EP  +IWGAL+S   +H + ++
Sbjct: 327 QDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKL 386

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            +   + + +LEPEN   YV L+N YA + +W+ V +LR  +  RGLKK+PGCSWI +  
Sbjct: 387 AEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKS 446

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           K H F   + +HP +  I  +L  L   M+     P
Sbjct: 447 KVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFP 482



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 144/321 (44%), Gaps = 45/321 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A + SL+  K  H+ I      SN FV   L+  YA CG    +  VF  +
Sbjct: 101 TITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEM 160

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD+  +N++I GY KN   NEAL LF +M    + PD  TLA I      +  L+ G 
Sbjct: 161 PVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGK 219

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HG  ++ GF  D  +AN+L+ MYVKCG       LFD +P +++ +W           
Sbjct: 220 EVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITW----------- 268

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  T MI GY  +G  + A+  F EM+ +  IEP++VS +
Sbjct: 269 -----------------------TVMIAGYGMHGFGNNAITTFNEMR-QAGIEPDEVSFI 304

Query: 262 SVLPTCSSLIGLSGGKQIHGFA-----IRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           S+L  CS    L  G +          ++ +L H       ++D+ ++ G L  A +  +
Sbjct: 305 SILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYA----CIVDLLARSGKLAMAYKFIK 360

Query: 317 DSSFNKDAITWSSIVSGYGLH 337
                 DA  W +++SG  +H
Sbjct: 361 SMPIEPDATIWGALLSGCRIH 381



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 97/175 (55%), Gaps = 3/175 (1%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +VS+L  C++   +S G+ +HG  ++  ++   + CN L+DMY+KCG LD A  VF+  S
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +  +TW+S+++ Y   G   EA+ L+++M   G  PDI TI  VL AC  +G +  G 
Sbjct: 61  V-RTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGK 119

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +++N  I    ++    +C  ++DM  + G ++ A      MPV+   S W  ++
Sbjct: 120 DVHN-YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIIS-WNTMI 172



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 2/220 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A+  SL   K+ H  IL  G  S+  V+  L+  Y  CG P  ++L+F+ I
Sbjct: 201 TLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMI 260

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD+  +  +I GY  +   N A+  F+ M  + + PD+ +  +I         L+ G 
Sbjct: 261 PTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGW 320

Query: 142 -LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHAS 199
              + +  +      +     ++ +  + GK +        MP + +   W   +SG   
Sbjct: 321 RFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRI 380

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
             D  L  +      +++  N   +  + N Y +    +E
Sbjct: 381 HHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEE 420


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 182/536 (33%), Positives = 276/536 (51%), Gaps = 70/536 (13%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN-------------------- 79
           KQ H+ +L LG   N FV T LI  YA  G+   ++LVF+                    
Sbjct: 148 KQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASK 207

Query: 80  -----------SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATI 127
                       I  +DV  +N++I+GY ++    EA+  F  M  + V+P+  T L+ +
Sbjct: 208 GFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVL 267

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
           S  +     L +G  +       G   ++ L N L+ MYVKCG   E  NLF+       
Sbjct: 268 SACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFE------- 320

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
                                      +++ +NV +W  MI GY       EAL LF  M
Sbjct: 321 ---------------------------KIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRM 353

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLCNALIDMYSKC 305
            ++  I+PN V+ +S+LP C++L  L  GK +H +  +  K + + V+L  +LIDMY+KC
Sbjct: 354 -MQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKC 412

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           G L  A+R+F D    K   TW++++SG+ +HG    A+ L+++M   G  PD IT VGV
Sbjct: 413 GDLAVAKRIF-DCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGV 471

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L+AC  +GL++ G   ++S+I  Y++ P      C++D+ GRAG  D A   +K M ++P
Sbjct: 472 LTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKP 531

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485
             +IW +L+ A  +H   E+ +   K L +LEPENPS YV LSN+YA + RW+ VA++RT
Sbjct: 532 DGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRT 591

Query: 486 MMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            + D  +KK PGCS I +    H F V DK HP S  IY+MLD++ + +  A   P
Sbjct: 592 RLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVP 647



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 221/415 (53%), Gaps = 10/415 (2%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNS 91
           ++L+  KQ HSQI+  G  +  F  +KLI   A+   G  + +  +F +I++ +  ++N 
Sbjct: 39  KTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNH 98

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I G   +     ALE + +M  S   P+++T  +I K   +I+  + G  +H   +K+G
Sbjct: 99  MIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLG 158

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              +  +  SL++MY + G+      +FD+   R+  S+   I+G+AS G    +  +R 
Sbjct: 159 LEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKG---FLDEARE 215

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS-SL 270
           +FD++  R+V +W AMI+GY Q+G ++EA+  F EM+ + ++ PN  +++SVL  C+ S 
Sbjct: 216 LFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMR-RAKVTPNVSTMLSVLSACAQSG 274

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G  +  +   + L  ++ L N LIDMY KCG L+ A  +FE    +K+ ++W+ +
Sbjct: 275 SSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ-DKNVVSWNVM 333

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV-INTY 389
           + GY       EA+ L+ +M+     P+ +T + +L AC   G ++ G  ++  V  N  
Sbjct: 334 IGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMK 393

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            +K T  +   ++DM  + G L  A      M  + S + W A++S   MHG+++
Sbjct: 394 SMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTK-SLATWNAMISGFAMHGHTD 447


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/522 (33%), Positives = 279/522 (53%), Gaps = 39/522 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L   A  + L+L  Q HS     G  S+ +V T  I+ Y+ CG+   +  +F 
Sbjct: 221 TTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFR 280

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
             +  D+  YN++I+GY  N     +L LF  +  S       TL ++  +SG    L +
Sbjct: 281 EFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGH---LML 337

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              IHG S+K  F+    ++ +L ++Y K  +                            
Sbjct: 338 IYAIHGYSLKSNFLSHTSVSTALTTVYSKLNE---------------------------- 369

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                 +  +R++FD+   +++ +W AMI+GY QNG  ++A+ LF EMQ      PN V+
Sbjct: 370 ------IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ-NSEFSPNPVT 422

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +  +L  C+ L  LS GK +H      +    + +  ALI MY+KCGS+  ARR+F D  
Sbjct: 423 ITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF-DFM 481

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             K+ +TW++++SGYGLHG G EA+ ++++M+  G  P  +T + VL AC  +GL+ EG 
Sbjct: 482 PKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGD 541

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           EI+NS+I+ Y  +P+ +  ACVVD+LGRAG L RAL FI+ MP++P PS+W  L+ A  +
Sbjct: 542 EIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRI 601

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H ++ +     + L +L+P+N   +V LSN++++ R +   A +R   K R L K+PG +
Sbjct: 602 HKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYT 661

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            I I    H F+  D++HP   +I+E L+ L   MR A   P
Sbjct: 662 LIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQP 703



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/491 (23%), Positives = 219/491 (44%), Gaps = 82/491 (16%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           FL +     S+    Q+H+QI+  G  ++  + TKL    +  G    ++ +F S+Q  D
Sbjct: 23  FLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPD 82

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLA-TISKLSGEIKDLNVGMLI 143
           V+L+N L+ G+  N   + +L +F+++  S ++ P+  T A  IS  SG  +D   G +I
Sbjct: 83  VFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASG-FRDDRAGCVI 141

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HG +I  G   +++L ++++ MY K  +  +   +FD MP+++   WN  ISG+  +   
Sbjct: 142 HGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKN--- 198

Query: 204 SLVVRSRRVFDQMKRRNV----------------------------------------YA 223
            + V S +VF  +   +                                         Y 
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV 258

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV------------------------- 258
            T  I+ Y + G +  A  LF E +  D +  N +                         
Sbjct: 259 LTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318

Query: 259 -----SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
                +LVS++P    L+ +     IHG++++       S+  AL  +YSK   ++ AR+
Sbjct: 319 KLKSSTLVSLVPVSGHLMLIYA---IHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARK 375

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           +F++S   K   +W++++SGY  +G   +A+ L+ +M      P+ +TI  +LSAC + G
Sbjct: 376 LFDESP-EKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLG 434

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            ++ G  +++ V +T   + +  +   ++ M  + G +  A      MP + +   W  +
Sbjct: 435 ALSLGKWVHDLVRST-DFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTM 492

Query: 434 VSASVMHGNSE 444
           +S   +HG+ +
Sbjct: 493 ISGYGLHGHGQ 503


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 175/516 (33%), Positives = 293/516 (56%), Gaps = 39/516 (7%)

Query: 30  SATH-RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYL 88
           +A+H +  +L +Q H+ ++    ++   V   LI  Y+ C     S  +F+++  KDV  
Sbjct: 299 AASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVS 358

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +N++I+ +V+N  ++EAL LF  M   ++  D  T+  +   + ++++ ++G   HG  +
Sbjct: 359 WNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLL 418

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           + G   +  + + L+ MY K G      N+F++                     FS    
Sbjct: 419 RNGIQFEG-MDSYLIDMYAKSGLIEAAQNVFEK--------------------SFS---- 453

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
                     R+   W +M++GY QNG +D+A ++  +M L  ++ PN V+L S+LP C+
Sbjct: 454 --------HERDQATWNSMMSGYTQNGLVDQAFLILRQM-LDQKVMPNVVTLASILPACN 504

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
               +  GKQ+HGF+IR +L+ +V +  ALIDMYSK GS+  A  VF  ++  K  +T+S
Sbjct: 505 PSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKAN-EKSIVTYS 563

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++ GYG HG G  A+ ++++M   G +PD +T+V VLSAC  +GL++EGL+I+ S+   
Sbjct: 564 TMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTV 623

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP-SIWGALVSASVMHGNSEMQD 447
           Y I+P+TE   CV DMLGRAG++D+A +F+  +  + +   IWG+L++A  +H   E+  
Sbjct: 624 YNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGK 683

Query: 448 LAYKSLIQLEPENPSN--YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
           L  K L+++E  N     +V LSN+YA  R W+ V  +R  M++RGLKK  G SWI I G
Sbjct: 684 LVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAG 743

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             + F+  D+ HP S  IY ML++L++ M+ A   P
Sbjct: 744 YMNHFASKDRKHPQSDQIYSMLEELLMEMKHAGYRP 779



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/503 (23%), Positives = 223/503 (44%), Gaps = 92/503 (18%)

Query: 1   MILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           +  S+ +++   V   +YT ++V   L+  A  R+L + K  H+  L      +  V   
Sbjct: 56  LFYSNMKSSSPQVKCDSYTYSSV---LKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNS 112

Query: 61  LITAYALCGQPTQS-------------QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
           L+  Y++C   T               + VF++++ + V  +N+LI  YV+   + EA++
Sbjct: 113 LLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVK 172

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG--FVVDVILANSLMSM 165
            FS M    + P   +   +      + D     ++HG+ +K+G  +V D+ + +S + M
Sbjct: 173 QFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFM 232

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y + G    CL                                +++VFD    RN   W 
Sbjct: 233 YAELG----CLEF------------------------------AKKVFDNCLERNTEVWN 258

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
            MI+ +VQN    E + LF +    +    ++V+L+S +   S L      +Q+H F I+
Sbjct: 259 TMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIK 318

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
                 V + NALI MYS+C S+D + ++F D+   KD ++W++++S +  +G   EA++
Sbjct: 319 NVAVTQVCVMNALIAMYSRCNSIDTSFKIF-DNMPEKDVVSWNTMISAFVQNGLNDEALM 377

Query: 346 LYNKMVCLGSKPDIITIVGVLSACG----------------RSGLINEGLEIYNSVINTY 389
           L+ +M       D +T+  +LSA                  R+G+  EG++ Y       
Sbjct: 378 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSY------- 430

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALD-FIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
                      ++DM  ++G ++ A + F K+   E   + W +++S    +G   + D 
Sbjct: 431 -----------LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNG---LVDQ 476

Query: 449 AYKSLIQ-LEPENPSNYVSLSNL 470
           A+  L Q L+ +   N V+L+++
Sbjct: 477 AFLILRQMLDQKVMPNVVTLASI 499



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 186/408 (45%), Gaps = 63/408 (15%)

Query: 67  LC--GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN--VSPDDF 122
           LC  GQ   ++ +F+++      L+N++I G V N+  +EAL  +SNM  S+  V  D +
Sbjct: 14  LCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSY 73

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC------GK----F 172
           T +++ K   + ++L VG  +H   ++       I+ NSL++MY  C      GK    +
Sbjct: 74  TYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 133

Query: 173 SEC---LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           S C     +FD M +R V +WN  I+ +         VR+ R  + +K+           
Sbjct: 134 SRCDLVRKVFDTMRKRTVVAWNTLIAWY---------VRTERYAEAVKQ----------- 173

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KE 287
                            M +K  I+P+ VS V+V P  SSL        +HG  ++   E
Sbjct: 174 ---------------FSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSE 218

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
             +D+ + ++ I MY++ G L+ A++VF D+   ++   W++++S +  +    E + L+
Sbjct: 219 YVNDLYVVSSAIFMYAELGCLEFAKKVF-DNCLERNTEVWNTMISAFVQNNFSLEGIQLF 277

Query: 348 NKMV-CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDM 404
            + V    +  D +T++  +SA           +++  VI    +   T++C    ++ M
Sbjct: 278 FQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAV---TQVCVMNALIAM 334

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG-NSEMQDLAYK 451
             R   +D +      MP E     W  ++SA V +G N E   L Y+
Sbjct: 335 YSRCNSIDTSFKIFDNMP-EKDVVSWNTMISAFVQNGLNDEALMLFYE 381


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/517 (33%), Positives = 285/517 (55%), Gaps = 9/517 (1%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           +VSA    ++L    H     +  + +PFV T  +  YA CG+   ++ VF+ + H+DV 
Sbjct: 123 KVSALFEGMEL----HGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVV 178

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            +N++I  Y +    +EA +LF  M  SNV PD+  L  I    G   ++     I+   
Sbjct: 179 TWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFL 238

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           I+    +D  L  +L++MY   G        F +M  RN+      +SG++  G      
Sbjct: 239 IENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLD--- 295

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            ++ +FDQ +++++  WT MI+ YV++    EAL +F EM     I+P+ VS+ SV+  C
Sbjct: 296 DAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSG-IKPDVVSMFSVISAC 354

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           ++L  L   K +H       L  ++S+ NALI+MY+KCG LD  R VFE     ++ ++W
Sbjct: 355 ANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSW 413

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           SS+++   +HG+  +A+ L+ +M     +P+ +T VGVL  C  SGL+ EG +I+ S+ +
Sbjct: 414 SSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTD 473

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            Y I P  E   C+VD+ GRA  L  AL+ I++MPV  +  IWG+L+SA  +HG  E+  
Sbjct: 474 EYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGK 533

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A K +++LEP++    V +SN+YA  +RW+ V  +R +M+++ + K  G S I  +GK+
Sbjct: 534 FAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKS 593

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
           H F + DK H  S  IY  LD+++  ++ A   P  G
Sbjct: 594 HEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCG 630



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 214/459 (46%), Gaps = 43/459 (9%)

Query: 34  RSLKLTKQSHSQILS--LGHISNPFV------STKLITAYALCGQPTQSQLVFNSIQHK- 84
           +SL   KQ H+ IL   + H  N F+      S+ +  +YAL         VF+SI    
Sbjct: 23  KSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALN--------VFSSIPSPP 74

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           +  ++N  +    ++      +  +  + +     D F+   I K   ++  L  GM +H
Sbjct: 75  ESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELH 134

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
           G++ KI  + D  +    M MY  CG+ +   N+FDEM  R+V +WN  I  +     F 
Sbjct: 135 GVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCR---FG 191

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMI------NGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
           LV  + ++F++MK  NV     ++       G   N   + A+  FL       IE N V
Sbjct: 192 LVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFL-------IE-NDV 243

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFA---IRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
            + + L T  +L+ +  G      A    RK    ++ +  A++  YSKCG LD A+ +F
Sbjct: 244 RMDTHLLT--ALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIF 301

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D +  KD + W++++S Y       EA+ ++ +M C G KPD++++  V+SAC   G++
Sbjct: 302 -DQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGIL 360

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           ++   ++ S I+   ++    I   +++M  + G LD   D  + MP     S W ++++
Sbjct: 361 DKAKWVH-SCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVS-WSSMIN 418

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           A  MHG +    L+  + ++ E   P+    +  LY  S
Sbjct: 419 ALSMHGEAS-DALSLFARMKQENVEPNEVTFVGVLYGCS 456


>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 176/511 (34%), Positives = 286/511 (55%), Gaps = 20/511 (3%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           S +   ++H+QI+  G     ++   L++ Y   G    +Q VF  I      ++N +I 
Sbjct: 39  SFRNLAKTHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIK 98

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G+ ++    +++ELF  M  + V  + FT + +       +    G  IHG  +  G+  
Sbjct: 99  GHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWS 158

Query: 155 DVILANSLMSMYVKCGK-----FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           ++ +  +L+++Y   G          L LFDEMP  NV  WN  ++G+   GDF     +
Sbjct: 159 NLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFD---GA 215

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           R+VFD+M  RNV  WT M+ G+ QNG    AL LF +M+ +  +E ++V+LV+ L  C+ 
Sbjct: 216 RKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMR-RAGVELDQVALVAALSACAE 274

Query: 270 LIGLSGGKQIHGFAIR----KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
           L  L+ GK IHG+  R    + L   VSL NALI MY+ CG++D A ++FE+    ++ +
Sbjct: 275 LGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIP-QRNTV 333

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGS---KPDIITIVGVLSACGRSGLINEGLEIY 382
           +WSSI++G+   G G EA+ ++  M+C G    +PD IT +G L+AC  +GLI++G+ ++
Sbjct: 334 SWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLF 393

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            S+  T+ + P  E   C+VD+L RAG L  AL  I++MP++P+ ++WGAL+S   +H N
Sbjct: 394 QSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKN 453

Query: 443 SEMQDLAYKSL-IQLEPENPSN--YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
            E+     K L  +++P N +   ++ L+N+YA+  RW   A +R  M D G+KK  G S
Sbjct: 454 DEIVSHVAKHLSFEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRS 513

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           WI I+G    F V ++ H     IYEML ++
Sbjct: 514 WIEINGVLCSFMVGEETHKDVNLIYEMLGNI 544


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 184/489 (37%), Positives = 283/489 (57%), Gaps = 7/489 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           HS I   G  S+ FV   LI  Y   G    ++ +F+    KDV  + ++INGY +N+  
Sbjct: 175 HSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWL 234

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           +EA+ LF++M  S+V P++ T+  +     +  D  +G  +H    +      + L N++
Sbjct: 235 DEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAM 294

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + MYVKCG  +    +F+ M +R+V SW   ++G+A +GD      +R++FD+M  RN+ 
Sbjct: 295 LDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLG---SARKLFDEMPERNIV 351

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +W AMI GY QN    EAL LF  M     + P + +LV VL     L  L  G++IH  
Sbjct: 352 SWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCN 411

Query: 283 AIRKELNHDVSLC--NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
            + K +   VSL   NA++DMY+KCGS+D A ++F  S   K+ ++W+S++S Y  +G  
Sbjct: 412 HVNK-IGIQVSLILKNAVMDMYAKCGSIDAAAKLFH-SMPEKNLVSWNSMISAYASYGHA 469

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            +A+ L+++M+  G KPD IT +GVLSAC   G ++EG   + S+ N + ++P  E  AC
Sbjct: 470 KKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYAC 529

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+L R G L  A + I  MP+E S   WGAL+ A   HGN EM  LA + L++L+PE+
Sbjct: 530 MVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDPED 589

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
              Y  L+N+ A  ++W  V  +R MM++RG+KK PG S I I GK H F VAD +H  S
Sbjct: 590 SGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFHEFLVADTSHTRS 649

Query: 521 VSIYEMLDD 529
             IY ++++
Sbjct: 650 SEIYRVVNE 658



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 209/456 (45%), Gaps = 71/456 (15%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ  + I   G ++  F +++L+   AL   G    + L+F+  +  + + +N++I GY 
Sbjct: 69  KQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYC 128

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           K +  +     F  M  +    D  +     K  G+  +  VGM +H +  K GF  D+ 
Sbjct: 129 KANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLF 188

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + N L+  YV+ G       +FDE   ++V +W                           
Sbjct: 189 VQNGLIQNYVETGCLGFARQMFDESSVKDVVTW--------------------------- 221

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
                  T MINGY +N  LDEA+ LF  M L   ++PN+V+++++L  CS       GK
Sbjct: 222 -------TTMINGYARNNWLDEAIALFNSM-LSSDVKPNEVTMIALLSACSQKGDSEMGK 273

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE--------------------- 316
            +H    RK++   ++L NA++DMY KCG L  AR +F                      
Sbjct: 274 TLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNG 333

Query: 317 ---------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV-CLGSKPDIITIVGVL 366
                    D    ++ ++W+++++GY  + +  EA+ L++ MV  +G  P   T+V VL
Sbjct: 334 DLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVL 393

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           SA G+ G +  G EI+ + +N   I+ +  +   V+DM  + G +D A     +MP E +
Sbjct: 394 SASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMP-EKN 452

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLI--QLEPEN 460
              W +++SA   +G+++     +  +I   L+P++
Sbjct: 453 LVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDH 488


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 175/516 (33%), Positives = 293/516 (56%), Gaps = 39/516 (7%)

Query: 30  SATH-RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYL 88
           +A+H +  +L +Q H+ ++    ++   V   LI  Y+ C     S  +F+++  KDV  
Sbjct: 323 AASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVS 382

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +N++I+ +V+N  ++EAL LF  M   ++  D  T+  +   + ++++ ++G   HG  +
Sbjct: 383 WNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLL 442

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           + G   +  + + L+ MY K G      N+F++                     FS    
Sbjct: 443 RNGIQFEG-MDSYLIDMYAKSGLIEAAQNVFEK--------------------SFS---- 477

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
                     R+   W +M++GY QNG +D+A ++  +M L  ++ PN V+L S+LP C+
Sbjct: 478 --------HERDQATWNSMMSGYTQNGLVDQAFLILRQM-LDQKVMPNVVTLASILPACN 528

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
               +  GKQ+HGF+IR +L+ +V +  ALIDMYSK GS+  A  VF  ++  K  +T+S
Sbjct: 529 PSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKAN-EKSIVTYS 587

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++ GYG HG G  A+ ++++M   G +PD +T+V VLSAC  +GL++EGL+I+ S+   
Sbjct: 588 TMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTV 647

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP-SIWGALVSASVMHGNSEMQD 447
           Y I+P+TE   CV DMLGRAG++D+A +F+  +  + +   IWG+L++A  +H   E+  
Sbjct: 648 YNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGK 707

Query: 448 LAYKSLIQLEPENPSN--YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
           L  K L+++E  N     +V LSN+YA  R W+ V  +R  M++RGLKK  G SWI I G
Sbjct: 708 LVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAG 767

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             + F+  D+ HP S  IY ML++L++ M+ A   P
Sbjct: 768 YMNHFASKDRKHPQSDQIYSMLEELLMEMKHAGYRP 803



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/503 (23%), Positives = 223/503 (44%), Gaps = 92/503 (18%)

Query: 1   MILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           +  S+ +++   V   +YT ++V   L+  A  R+L + K  H+  L      +  V   
Sbjct: 80  LFYSNMKSSSPQVKCDSYTYSSV---LKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNS 136

Query: 61  LITAYALCGQPTQS-------------QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
           L+  Y++C   T               + VF++++ + V  +N+LI  YV+   + EA++
Sbjct: 137 LLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVK 196

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG--FVVDVILANSLMSM 165
            FS M    + P   +   +      + D     ++HG+ +K+G  +V D+ + +S + M
Sbjct: 197 QFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFM 256

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y + G    CL                                +++VFD    RN   W 
Sbjct: 257 YAELG----CLEF------------------------------AKKVFDNCLERNTEVWN 282

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
            MI+ +VQN    E + LF +    +    ++V+L+S +   S L      +Q+H F I+
Sbjct: 283 TMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIK 342

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
                 V + NALI MYS+C S+D + ++F D+   KD ++W++++S +  +G   EA++
Sbjct: 343 NVAVTQVCVMNALIAMYSRCNSIDTSFKIF-DNMPEKDVVSWNTMISAFVQNGLNDEALM 401

Query: 346 LYNKMVCLGSKPDIITIVGVLSACG----------------RSGLINEGLEIYNSVINTY 389
           L+ +M       D +T+  +LSA                  R+G+  EG++ Y       
Sbjct: 402 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSY------- 454

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALD-FIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
                      ++DM  ++G ++ A + F K+   E   + W +++S    +G   + D 
Sbjct: 455 -----------LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNG---LVDQ 500

Query: 449 AYKSLIQ-LEPENPSNYVSLSNL 470
           A+  L Q L+ +   N V+L+++
Sbjct: 501 AFLILRQMLDQKVMPNVVTLASI 523



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 196/434 (45%), Gaps = 63/434 (14%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
           QS S +    H +NP + T       LC  GQ   ++ +F+++      L+N++I G V 
Sbjct: 12  QSPSHLPLHTHSTNPKIPTIRYRLSRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVC 71

Query: 99  NHGHNEALELFSNMYYSN--VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           N+  +EAL  +SNM  S+  V  D +T +++ K   + ++L VG  +H   ++       
Sbjct: 72  NNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSR 131

Query: 157 ILANSLMSMYVKC------GK----FSEC---LNLFDEMPQRNVGSWNVRISGHASSGDF 203
           I+ NSL++MY  C      GK    +S C     +FD M +R V +WN  I+ +      
Sbjct: 132 IVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWY------ 185

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
              VR+ R  + +K+                            M +K  I+P+ VS V+V
Sbjct: 186 ---VRTERYAEAVKQ--------------------------FSMMMKIGIKPSPVSFVNV 216

Query: 264 LPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
            P  SSL        +HG  ++   E  +D+ + ++ I MY++ G L+ A++VF D+   
Sbjct: 217 FPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVF-DNCLE 275

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMV-CLGSKPDIITIVGVLSACGRSGLINEGLE 380
           ++   W++++S +  +    E + L+ + V    +  D +T++  +SA           +
Sbjct: 276 RNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQ 335

Query: 381 IYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           ++  VI    +   T++C    ++ M  R   +D +      MP E     W  ++SA V
Sbjct: 336 LHAFVIKNVAV---TQVCVMNALIAMYSRCNSIDTSFKIFDNMP-EKDVVSWNTMISAFV 391

Query: 439 MHG-NSEMQDLAYK 451
            +G N E   L Y+
Sbjct: 392 QNGLNDEALMLFYE 405


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 178/503 (35%), Positives = 271/503 (53%), Gaps = 42/503 (8%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD--VYLYNSLINGYVK 98
           Q H  ++  G    PFV T LI+ Y  C     ++ VF+   H       YN+LI GY  
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 99  NHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           N   ++A+ LF  M    VS +  T L  I   +G I  L  G  +H  S++ G   D+ 
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIH-LGFGTSLHACSVRFGLDGDLS 195

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + N L++MYV+CG                             S DF+     R++FD M 
Sbjct: 196 VGNCLLTMYVRCG-----------------------------SVDFA-----RKLFDGMP 221

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            + +  W AMI+GY QNG     L L+ +M+    I P+ V+LV VL +C+ L   + G+
Sbjct: 222 EKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTG-IVPDPVTLVGVLSSCAHLGAHAAGR 280

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           ++           +  L NALI+MY++CG+L  AR +F D    K+ I+W++I++GYG+H
Sbjct: 281 EVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIF-DGMTEKNVISWTAIIAGYGMH 339

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G+G  AV L+++M+     PD    V VLSAC  +GL  +GL  + ++   Y ++P  E 
Sbjct: 340 GQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEH 399

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            +CVVD+LGRAG+L+ A   I +M VEP  ++WGAL+ A  +H N E+ +LA++ +I+ E
Sbjct: 400 YSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFE 459

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P N   YV LSN+++ +   + +  +R MM++R LKK PGCS++   G+ H F   D+ H
Sbjct: 460 PTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTH 519

Query: 518 PCSVSIYEMLDDL--ILIMRGAA 538
           P +  IY MLD L  I+  RG +
Sbjct: 520 PQAQEIYHMLDGLEDIIKRRGGS 542


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 185/586 (31%), Positives = 290/586 (49%), Gaps = 67/586 (11%)

Query: 22   TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
            T  H L   A   +    K  H  IL  G  SN  ++  L+  Y  CG   ++Q VF   
Sbjct: 433  TFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGT 492

Query: 82   QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            Q +DV  +NS+I G+ ++  +  A +LF  M    + PD+ T A++       + L +G 
Sbjct: 493  QARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGK 552

Query: 142  LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
             IHG   + G  +DV L N+L++MY++CG   +  N+F  +  R+V SW   I G A  G
Sbjct: 553  QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQG 612

Query: 202  D----------------------FSLVVR---SRRVFDQMKRRNVY-----------AWT 225
            +                      FS +++   S    D+ K+   Y              
Sbjct: 613  EDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGN 672

Query: 226  AMINGYVQNGDLDEALVLFLEMQLKDRIE------------------------------P 255
            A+I+ Y ++G + +A  +F +M  +D +                               P
Sbjct: 673  ALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVP 732

Query: 256  NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
            NK S VS+L  CSS   L  GK++H   ++++L  DV +  ALI MY+KCGS   A+ VF
Sbjct: 733  NKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVF 792

Query: 316  EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
             D+   K+ +TW+++++ Y  HG   +A+  +N M   G KPD  T   +LSAC  +GL+
Sbjct: 793  -DNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLV 851

Query: 376  NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
             EG +I++S+ + Y + PT E   C+V +LGRA +   A   I  MP  P  ++W  L+ 
Sbjct: 852  LEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLG 911

Query: 436  ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
            A  +HGN  + + A  + ++L   NP+ Y+ LSN+YA++ RWD VA++R +M+ RG++K 
Sbjct: 912  ACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKE 971

Query: 496  PGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            PG SWI +    H F  AD++HP +  IY  L  L + M  A   P
Sbjct: 972  PGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFP 1017



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 212/449 (47%), Gaps = 41/449 (9%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   +T ++L+  K  HS I   GH S+  +   LI+ YA CG   +++ +F ++  +D+
Sbjct: 337 LNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDL 396

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N++I GY +     EA+ L+  M    V P   T   +            G +IH  
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            ++ G   +  LAN+LM+MY +CG   E  N+F+    R+V SWN  I+GHA        
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA-------- 508

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                                     Q+G  + A  LF EMQ  + +EP+ ++  SVL  
Sbjct: 509 --------------------------QHGSYETAYKLFQEMQ-NEELEPDNITFASVLSG 541

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C +   L  GKQIHG      L  DV+L NALI+MY +CGSL  AR VF  S  ++D ++
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFH-SLQHRDVMS 600

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++ G    G+  +A+ L+ +M   G +P   T   +L  C  S  ++EG ++   ++
Sbjct: 601 WTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYIL 660

Query: 387 NT-YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           N+ Y +   T +   ++    ++G +  A +    MP     S W  +++    +G  + 
Sbjct: 661 NSGYELD--TGVGNALISAYSKSGSMTDAREVFDKMPSRDIVS-WNKIIAGYAQNGLGQT 717

Query: 446 Q-DLAYKSLIQLEPENPSNYVSLSNLYAS 473
             + AY+   Q    N  ++VSL N  +S
Sbjct: 718 AVEFAYQMQEQDVVPNKFSFVSLLNACSS 746



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 212/509 (41%), Gaps = 73/509 (14%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT    LQ     R L   K+ H+Q++      + F+S  LI  Y  C     +  VF  
Sbjct: 28  ATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +  +DV  +NSLI+ Y +     +A +LF  M  +   P+  T  +I        +L  G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS----- 195
             IH   IK G+  D  + NSL+SMY KCG       +F  +  R+V S+N  +      
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 196 ----------GHASSGDFSL----------VVRSRRVFDQMKR-----------RNVYAW 224
                     G  SS   S              +  + D+ KR            ++   
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 225 TAMINGYVQNGDLD-------------------------------EALVLFLEMQLKDRI 253
           TA++   V+ GD+D                               EA   +  M+  D +
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMR-SDGV 326

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
             N+ + +S+L  CS+   L  GK IH        + DV + NALI MY++CG L  AR 
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           +F      +D I+W++I++GY       EA+ LY +M   G KP  +T + +LSAC  S 
Sbjct: 387 LFYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSS 445

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
              +G  I+  ++ +  IK    +   +++M  R G L  A +  +        S W ++
Sbjct: 446 AYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSM 503

Query: 434 VSASVMHGNSEMQDLAYKSLI--QLEPEN 460
           ++    HG+ E     ++ +   +LEP+N
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 155/338 (45%), Gaps = 39/338 (11%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           IH   ++     D+ L+N L++MYVKC                                 
Sbjct: 49  IHAQMVEAWVGPDIFLSNLLINMYVKCRS------------------------------- 77

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V+ + +VF +M RR+V +W ++I+ Y Q G   +A  LF EMQ    I PNK++ +S
Sbjct: 78  ---VLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYIS 133

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           +L  C S   L  GK+IH   I+     D  + N+L+ MY KCG L  AR+VF   S  +
Sbjct: 134 ILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGIS-PR 192

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D +++++++  Y       E + L+ +M   G  PD +T + +L A     +++EG  I+
Sbjct: 193 DVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIH 252

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG- 441
              +    +     +   +V M  R G +D A    K    +    ++ AL++A   HG 
Sbjct: 253 KLTVEE-GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGT-ADRDVVVYNALIAALAQHGH 310

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
           N E  +  Y+        N + Y+S+ N  ++S+  +A
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEA 348



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 4/162 (2%)

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           E  + + V++L  C+    L   K+IH   +   +  D+ L N LI+MY KC S+  A +
Sbjct: 24  ETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VF++    +D I+W+S++S Y   G   +A  L+ +M   G  P+ IT + +L+AC    
Sbjct: 84  VFKEMP-RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 374 LINEGLEIYNSVINT-YRIKPTTEICACVVDMLGRAGQLDRA 414
            +  G +I++ +I   Y+  P  +    ++ M G+ G L RA
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQ--NSLLSMYGKCGDLPRA 182


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 177/507 (34%), Positives = 287/507 (56%), Gaps = 10/507 (1%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT---QSQLVFNSIQHKDVYLYN 90
           ++L+  KQ H+QI++  H ++PF  + L +  AL   PT    ++ +F+ +Q+    LYN
Sbjct: 78  KTLRHLKQVHAQIIT--HHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYN 135

Query: 91  SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           SLI     +    EAL L+  M  S + PD  T   + K   E      G+L+H   +K 
Sbjct: 136 SLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKS 195

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           GF  D  + +SL+ +Y           LF+    R+V SWN  I G+    +      +R
Sbjct: 196 GFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMG---HAR 252

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
            VFD+M  R+V +W  MINGY   G  +EAL LF +M+    ++P + ++VS+L  C+ L
Sbjct: 253 MVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVG-VKPTEATVVSLLSACAHL 311

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G  +H +     +  +  +  AL+DMY+KCG +  A +VF ++  +KD + W++I
Sbjct: 312 GALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF-NAMESKDVLAWNTI 370

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++G  +HG   EA  L+ +M   G +P+ IT V +LSAC  +G+++EG ++ + + ++Y 
Sbjct: 371 IAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYG 430

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           I+P  E   CV+D+L RAG L+ A++ I TMP+EP+PS  GAL+    +HGN E+ ++  
Sbjct: 431 IEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVG 490

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           K LI L+P +   Y+ LSN+YA++++WD   ++R +MK  G+ K PG S I + G  H F
Sbjct: 491 KRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRF 550

Query: 511 SVADKAHPCSVSIYEMLDDLILIMRGA 537
              D +HP S  IYE L+++   ++ A
Sbjct: 551 VAGDWSHPESNKIYEKLNEIHTRLKSA 577


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/505 (33%), Positives = 287/505 (56%), Gaps = 5/505 (0%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A+   LK     H++IL + H  +      LI  YA CG    ++ VF S++  D 
Sbjct: 285 LSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDH 344

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NSLI G V      +AL LF+ M  S+V  D+F L TI  +       + G L+HG 
Sbjct: 345 ISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGY 404

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           +IK G      + N++++MY KCG   +   +F  MP RN  SW   I+  + SGD   +
Sbjct: 405 TIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGD---I 461

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
            ++R  FD M  RN+  W +M++ YVQNG  +E L L++ M+  + ++P+ ++  + +  
Sbjct: 462 GKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMR-SNGVQPDWITFTTSIRA 520

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+ L  +  G Q+   A +  L+ +VS+ N+++ MYS+CG +  A+  F DS  +KD I+
Sbjct: 521 CADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTF-DSIDDKDLIS 579

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+++++ +  +G G + +  +  M+    KP+ I+ V VLS C   GL+ EG   ++S+ 
Sbjct: 580 WNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMT 639

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             + I PT E  +C+VD+LGRAG L++A D I+ MP +P+ ++W AL+ +  +H +  + 
Sbjct: 640 RVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLA 699

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
           + A K L++L+ E    YV LSN+Y+ S   D VA++R +MK +G++ S GCSWI +  +
Sbjct: 700 ETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNR 759

Query: 507 THCFSVADKAHPCSVSIYEMLDDLI 531
            H F+V + +HP    +Y  L++++
Sbjct: 760 VHVFTVDETSHPQIKEVYLKLEEMM 784



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 220/455 (48%), Gaps = 46/455 (10%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           F Q S TH+S  + ++ H+Q++  G  S+ F+   L+  Y+ CG    +  VF    H++
Sbjct: 14  FKQCSFTHKSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRN 73

Query: 86  VYLYN---------------------------------SLINGYVKNHGHNEALELFSNM 112
           ++ +N                                 ++I+GY +N  H+ + E FS M
Sbjct: 74  IFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLM 133

Query: 113 YYSN----VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
                    + D F+  ++ K  G + D  + + +H L  K+GF ++  + NS++ MYVK
Sbjct: 134 IRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVK 193

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHAS-SGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           CG       +F ++ + ++  WN  I G++   G +    ++ ++F++M  R+  +W  +
Sbjct: 194 CGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPY----KALQIFNRMPERDEVSWNTL 249

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I+ + Q+G   + L +F+EM       PN ++  SVL  C+S   L  G  +H   +R E
Sbjct: 250 ISIFSQHGFGVQCLAMFVEM-CNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRME 308

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
            + D+   N LIDMY+KCG LD A+RVF+ S    D I+W+S+++G    G G +A++L+
Sbjct: 309 HSLDLVFGNGLIDMYAKCGCLDLAKRVFK-SLREHDHISWNSLITGVVHFGLGEDALILF 367

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
           N+M       D   +  +L  C      + G  ++   I +  +  +  +   ++ M  +
Sbjct: 368 NQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKS-GMGSSAPVGNAIITMYAK 426

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            G  D+A    + MP+  + S W A+++A    G+
Sbjct: 427 CGDTDKADLVFRLMPLRNTIS-WTAMITAFSRSGD 460



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 108/505 (21%), Positives = 203/505 (40%), Gaps = 104/505 (20%)

Query: 4   SSARNTFALVT------SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFV 57
           S +  TF+L+        +NY   +    ++   +    +L  Q H+ +  LG      +
Sbjct: 124 SRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCI 183

Query: 58  STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN- 116
              ++  Y  CG    ++ VF  I+   ++ +NS+I GY + +G  +AL++F+ M   + 
Sbjct: 184 QNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDE 243

Query: 117 ------------------------------VSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
                                          SP+  T  ++        DL  G  +H  
Sbjct: 244 VSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHAR 303

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            +++   +D++  N L+ MY KCG    CL+L                            
Sbjct: 304 ILRMEHSLDLVFGNGLIDMYAKCG----CLDL---------------------------- 331

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             ++RVF  ++  +  +W ++I G V  G  ++AL+LF +M+ +  +  ++  L ++L  
Sbjct: 332 --AKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMR-RSSVVLDEFILPTILGV 388

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE---------- 316
           CS     S G+ +HG+ I+  +     + NA+I MY+KCG  D A  VF           
Sbjct: 389 CSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISW 448

Query: 317 --------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
                               D    ++ +TW+S++S Y  +G   E + LY  M   G +
Sbjct: 449 TAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQ 508

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD IT    + AC    ++  G+++       + +     +   +V M  R G +  A +
Sbjct: 509 PDWITFTTSIRACADLAIVKLGMQVVTHA-TKFGLSLNVSVANSIVTMYSRCGLIKEAKN 567

Query: 417 FIKTMPVEPSPSIWGALVSASVMHG 441
              ++  +   S W A+++A   +G
Sbjct: 568 TFDSIDDKDLIS-WNAMLAAFAQNG 591


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 175/513 (34%), Positives = 282/513 (54%), Gaps = 41/513 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R L   K  H  +   G   + +V+  LIT YA CG+   ++ VF+ +  +D+  +NS+I
Sbjct: 142 RGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMI 201

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +GY K     EA+ LF  M      PD+ TL ++    G++ DL +G  + G  ++    
Sbjct: 202 SGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKME 261

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
           V+  + ++L+ MY KCG                                   ++ +RRVF
Sbjct: 262 VNSYMGSALIDMYGKCGD----------------------------------LISARRVF 287

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D M  ++V  W A+I GY QNG  +EA+VLF  M+ +    P++V+++ VL  CS++  L
Sbjct: 288 DSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMR-EAGPHPDRVTMIEVLSACSTIGAL 346

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GK +   A  K L HDV + +ALIDMY+KCGSLD A RVFE S  +K+ ++W++++S 
Sbjct: 347 DLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFE-SMPHKNEVSWNAMISA 405

Query: 334 YGLHGKGHEAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
              HG+  EA+ L+ +M       +P+ IT +GVLSAC  +GL++EG +++ S+  ++ +
Sbjct: 406 LAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGL 465

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
            P  E  +C+VD+  RAG L  A D IK MP +P   + G+L+ A     N+++ +   +
Sbjct: 466 VPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQ 525

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
             +++E  N  NYV  S +YA+ RRWD  A++R +M+  G+ K+PGCSWI I    H F 
Sbjct: 526 LFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEFH 585

Query: 512 VADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
             D  H  S++IY++L++    M+     P++G
Sbjct: 586 AGDSLHNHSMNIYQLLNEE---MKREGYIPNIG 615



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/433 (30%), Positives = 222/433 (51%), Gaps = 45/433 (10%)

Query: 14  TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNP-FVSTKLITAYALCGQPT 72
           T + +     +  L +    +S  L KQ H+Q+L +  I  P F+ +K+I    L     
Sbjct: 24  TQKEHHQTLTEKLLSLIKQCKSKNLLKQIHAQML-INSIPKPNFLLSKIIDLKDL----A 78

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKN-HGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
            + LVFN +   ++Y +N ++ G       ++  +EL+  +    +  ++FT   +    
Sbjct: 79  YASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIAC 138

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
           G ++ L  G + H L  K G   D  + +SL++MY +CG+      +FDEM  R++ SWN
Sbjct: 139 GNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWN 198

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                                             +MI+GY + G   EA+ LF+EM+ ++
Sbjct: 199 ----------------------------------SMISGYSKMGFTKEAIGLFMEMR-EE 223

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
             EP++++LVSVL  C  L  L  G+ + GF + K++  +  + +ALIDMY KCG L  A
Sbjct: 224 GFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISA 283

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
           RRVF DS  NKD +TW++I++GY  +G  +EA++L+N M   G  PD +T++ VLSAC  
Sbjct: 284 RRVF-DSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACST 342

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
            G ++ G  +  +  +   ++    + + ++DM  + G LD A+   ++MP +   S W 
Sbjct: 343 IGALDLGKWV-ETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVS-WN 400

Query: 432 ALVSASVMHGNSE 444
           A++SA   HG ++
Sbjct: 401 AMISALAFHGQAQ 413


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 167/474 (35%), Positives = 270/474 (56%), Gaps = 6/474 (1%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L K+ HS IL  G   + FV   LIT Y+ C +   ++++F+ +  +D+  +N+++ GY 
Sbjct: 126 LAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYS 185

Query: 98  KNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           +   + +  ELF  M  S  V P+  T  ++ +   +  DL  G+ +H    +    +DV
Sbjct: 186 QGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDV 245

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            L N+++ +Y KCG       LF+EM +++  ++   ISG+   G    V ++  +F + 
Sbjct: 246 SLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHG---FVNQAMDLFREQ 302

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           +R  +  W A+I+G VQN   + A+ +F  MQ      PN V+L S+LP  S    L GG
Sbjct: 303 ERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQ-SHGCRPNTVTLASILPVFSHFSTLKGG 361

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K+IHG+AIR   + ++ +  A+ID Y+KCG L  A+ VF D    +  I W+SI+S Y +
Sbjct: 362 KEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVF-DQIKGRSLIAWTSIISAYAV 420

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG  + A+ L+ +M+  G +PD +T   VL+AC  SG ++E  +I+N ++  Y I+P  E
Sbjct: 421 HGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVE 480

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             AC+V +L RAG+L  A++FI  MP+EP+  +WGAL++ + + G+ E+    +  L ++
Sbjct: 481 HYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEI 540

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           EPEN  NYV ++NLY+ S RW     +R +MK+  LKK PG SWI   G    F
Sbjct: 541 EPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIETSGGMQRF 594



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/476 (26%), Positives = 217/476 (45%), Gaps = 82/476 (17%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            +Q    H   ++ KQ H++++    + + F+ +KLI+ Y+  G    +  VF  I  K+
Sbjct: 9   LIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKN 68

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSN---VSPDDFTLA-TISKLSGEIKDLNVGM 141
           ++ +N+L+  Y  ++ H + L+LFS++  SN   V PD FT+   +  L+    +  +  
Sbjct: 69  IFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAK 128

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   ++ G   D+ + N+L++ Y +C +      +FD MP+R++ SWN          
Sbjct: 129 EVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWN---------- 178

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   AM+ GY Q G  ++   LF  M     ++PN ++ V
Sbjct: 179 ------------------------AMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAV 214

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVL  C+    L  G ++H F    ++  DVSL NA+I +Y+KCGSLD AR +FE+    
Sbjct: 215 SVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEE-MLE 273

Query: 322 KDAITWSSIVSGYGLHG-------------------------------KGHEAVLLYNKM 350
           KDAIT+ S++SGY +HG                               +   AV ++  M
Sbjct: 274 KDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAM 333

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRIKPTTEICACVVDMLGRAG 409
              G +P+ +T+  +L        +  G EI+   I NTY       +   ++D   + G
Sbjct: 334 QSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTY--DRNIYVATAIIDSYAKCG 391

Query: 410 QLDRA---LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ-DLAYKSLIQ-LEPEN 460
            L  A    D IK      S   W +++SA  +HG++ +   L Y+ L   ++P+ 
Sbjct: 392 YLHGAQLVFDQIKGR----SLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQ 443



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 11/239 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L V +   +LK  K+ H   +   +  N +V+T +I +YA CG    +QLVF+
Sbjct: 342 TVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFD 401

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I+ + +  + S+I+ Y  +   N AL LF  M  + + PD  T  ++        +L+ 
Sbjct: 402 QIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDE 461

Query: 140 GMLIHGLSI-KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGH 197
              I  + + + G    V     ++ +  + GK S+ +    +MP +     W   ++G 
Sbjct: 462 AWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGA 521

Query: 198 ASSGDFSLVVRSRRVFD---QMKRRNVYAWTAMINGYVQNG---DLDEALVLFLEMQLK 250
           + +GD  L    + VFD   +++  N   +  M N Y Q+G   D D    L  E++LK
Sbjct: 522 SVAGDVEL---GKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLK 577


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/533 (33%), Positives = 288/533 (54%), Gaps = 48/533 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNS 80
           T+   L   +    L+  K+ H+  L  G +  N FV + L+  Y  C Q    + VF+ 
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNV 139
           +  + + L+N++I GY +N    EAL LF  M  S  +  +  T+A +          + 
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              IHG  +K G   D  + N+LM MY + GK                            
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI--------------------------- 456

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR------- 252
             D ++     R+F +M+ R++  W  MI GYV +   ++AL+L  +MQ  +R       
Sbjct: 457 --DIAM-----RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGAS 509

Query: 253 ---IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
              ++PN ++L+++LP+C++L  L+ GK+IH +AI+  L  DV++ +AL+DMY+KCG L 
Sbjct: 510 RVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQ 569

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            +R+VF D    K+ ITW+ I+  YG+HG G EA+ L   M+  G KP+ +T + V +AC
Sbjct: 570 MSRKVF-DQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAAC 628

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS- 428
             SG+++EGL I+  +   Y ++P+++  ACVVD+LGRAG++  A   +  MP + + + 
Sbjct: 629 SHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG 688

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
            W +L+ AS +H N E+ ++A ++LIQLEP   S+YV L+N+Y+S+  WD   E+R  MK
Sbjct: 689 AWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMK 748

Query: 489 DRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           ++G++K PGCSWI    + H F   D +HP S  +   L+ L   MR     P
Sbjct: 749 EQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVP 801



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 226/514 (43%), Gaps = 67/514 (13%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
            L+  A  + ++L KQ H+ +   G+ + +  V+  L+  Y  CG       VF+ I  +
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI---KDLNVGM 141
           +   +NSLI+          ALE F  M   NV P  FTL ++      +   + L +G 
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 222

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   ++ G +   I+ N+L++MY K GK +                            
Sbjct: 223 QVHAYGLRKGELNSFII-NTLVAMYGKLGKLAS--------------------------- 254

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  S+ +      R++  W  +++   QN  L EAL    EM L+  +EP++ ++ 
Sbjct: 255 -------SKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG-VEPDEFTIS 306

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           SVLP CS L  L  GK++H +A++   L+ +  + +AL+DMY  C  +   RRVF D  F
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF-DGMF 365

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLINEGL 379
           ++    W+++++GY  +    EA+LL+  M    G   +  T+ GV+ AC RSG  +   
Sbjct: 366 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 425

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            I+  V+    +     +   ++DM  R G++D A+     M  +     W  +++  V 
Sbjct: 426 AIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVF 483

Query: 440 HGNSE--------MQDLAYK-----SLIQLEPENPSNYVSLSNLYASSRRWDAVAELR-- 484
             + E        MQ+L  K     S + L+P    N ++L  +  S     A+A+ +  
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKP----NSITLMTILPSCAALSALAKGKEI 539

Query: 485 ---TMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
               +  +     + G + + ++ K  C  ++ K
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 182/404 (45%), Gaps = 55/404 (13%)

Query: 44  SQILSLGHISNPFV------STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           SQ+L      +P++      S     A A+ G P+    +F S Q +    +  L+   V
Sbjct: 19  SQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPS----IFIS-QSRSPEWWIDLLRSKV 73

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD-V 156
           +++   EA+  + +M    + PD++    + K   +++D+ +G  IH    K G+ VD V
Sbjct: 74  RSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSV 133

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            +AN+L+++Y KCG F     +FD + +RN  SWN  IS   S   + + + + R     
Sbjct: 134 TVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM--- 190

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI---GL 273
                                           L + +EP+  +LVSV+  CS+L    GL
Sbjct: 191 --------------------------------LDENVEPSSFTLVSVVTACSNLPMPEGL 218

Query: 274 SGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
             GKQ+H + +RK ELN  +   N L+ MY K G L  + +V   S   +D +TW++++S
Sbjct: 219 MMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKL-ASSKVLLGSFGGRDLVTWNTVLS 275

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
               + +  EA+    +MV  G +PD  TI  VL AC    ++  G E++   +    + 
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD 335

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
             + + + +VDM     Q+         M  +    +W A+++ 
Sbjct: 336 ENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 13/180 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   K+ H+  +     ++  V + L+  YA CG    S+ VF+
Sbjct: 517 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 576

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I  K+V  +N +I  Y  +    EA++L   M    V P++ T  ++          + 
Sbjct: 577 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACS-----HS 631

Query: 140 GMLIHGLSIKIGFVVDVILANS------LMSMYVKCGKFSECLNLFDEMPQ--RNVGSWN 191
           GM+  GL I      D  +  S      ++ +  + G+  E   L + MP+     G+W+
Sbjct: 632 GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 691


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/519 (31%), Positives = 280/519 (53%), Gaps = 37/519 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A    +K  KQ H  +L  G + + +V   LI  Y+ C     +  + +++   DV
Sbjct: 135 LSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDV 194

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
           + YNS+++  V++    EA ++   M    V  D  T  ++  L  +I+DL +G+ IH  
Sbjct: 195 FSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQ 254

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            +K G V DV ++++L+  Y KCG+                                  V
Sbjct: 255 LLKTGLVFDVFVSSTLIDTYGKCGE----------------------------------V 280

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
           + +R+ FD ++ RNV AWTA++  Y+QNG  +E L LF +M+L+D   PN+ +   +L  
Sbjct: 281 LNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELED-TRPNEFTFAVLLNA 339

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+SL+ L+ G  +HG  +     + + + NALI+MYSK G++D +  VF +   N+D IT
Sbjct: 340 CASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNM-MNRDVIT 398

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++ GY  HG G +A+L++  M+  G  P+ +T +GVLSAC    L+ EG   ++ ++
Sbjct: 399 WNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIM 458

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-VEPSPSIWGALVSASVMHGNSEM 445
             + ++P  E   C+V +LGRAG LD A +F+KT   V+     W  L++A  +H N  +
Sbjct: 459 KKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNL 518

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
                +++IQ++P +   Y  LSN++A +R+WD V ++R +MK+R +KK PG SW+ I  
Sbjct: 519 GKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRN 578

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
            TH F      HP S  I+E +  L+ +++    +P +G
Sbjct: 579 NTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVG 617



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 203/449 (45%), Gaps = 44/449 (9%)

Query: 23  VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK---LITAYALCGQPTQSQLVFN 79
           V + L+ SAT +SL+  K  H+Q++     S     T+   LI  Y+ CGQ   ++ +F+
Sbjct: 26  VVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFD 85

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLN 138
            +  ++V  +++L+ GY+      E L LF N+    +  P+++    +     +   + 
Sbjct: 86  RMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVK 145

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G   HG  +K G ++   + N+L+ MY +C      + + D +P  +V S+N  +S   
Sbjct: 146 EGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALV 205

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
            SG        R    Q+ +R V                DE ++             + V
Sbjct: 206 ESG-------CRGEAAQVLKRMV----------------DECVIW------------DSV 230

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           + VSVL  C+ +  L  G QIH   ++  L  DV + + LID Y KCG +  AR+ F D 
Sbjct: 231 TYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQF-DG 289

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
             +++ + W+++++ Y  +G   E + L+ KM    ++P+  T   +L+AC     +  G
Sbjct: 290 LRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYG 349

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
             ++  ++ +   K    +   +++M  ++G +D + +    M +      W A++    
Sbjct: 350 DLLHGRIVMS-GFKNHLIVGNALINMYSKSGNIDSSYNVFSNM-MNRDVITWNAMICGYS 407

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
            HG  +   L ++ ++    E P NYV+ 
Sbjct: 408 HHGLGKQALLVFQDMMS-AGECP-NYVTF 434



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 145/326 (44%), Gaps = 45/326 (13%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           + S T    L + A  R L+L  Q H+Q+L  G + + FVS+ LI  Y  CG+   ++  
Sbjct: 227 WDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQ 286

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F+ ++ ++V  + +++  Y++N    E L LF+ M   +  P++FT A +      +  L
Sbjct: 287 FDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVAL 346

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
             G L+HG  +  GF   +I+ N+L++MY K G      N+F  M  R+V +WN      
Sbjct: 347 AYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWN------ 400

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                                       AMI GY  +G   +AL++F +M       PN 
Sbjct: 401 ----------------------------AMICGYSHHGLGKQALLVFQDMMSAGEC-PNY 431

Query: 258 VSLVSVLPTCSSLIGLSGG-----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           V+ + VL  C  L  +  G     + +  F +   L H       ++ +  + G LD A 
Sbjct: 432 VTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEH----YTCMVALLGRAGLLDEAE 487

Query: 313 RVFEDSSFNK-DAITWSSIVSGYGLH 337
              + ++  K D + W ++++   +H
Sbjct: 488 NFMKTTTQVKWDVVAWRTLLNACHIH 513


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/503 (34%), Positives = 292/503 (58%), Gaps = 22/503 (4%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC------GQPTQ----SQL 76
           LQ  ++   LK+    H  +L    IS+ FV+++L+   ALC       +PT     +  
Sbjct: 19  LQSCSSFSDLKII---HGFLLRTHLISDVFVASRLL---ALCVDDSTFNKPTNLLGYAYG 72

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F+ IQ+ +++++N LI  +      ++A   ++ M  S + PD+ T   + K S E++ 
Sbjct: 73  IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           + VG   H   ++ GF  DV + NSL+ MY  CG  +    +F +M  R+V SW   ++G
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +   G   +V  +R +FD+M  RN++ W+ MINGY +N   ++A+ LF E   ++ +  N
Sbjct: 193 YCKCG---MVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF-EFMKREGVVAN 248

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           +  +VSV+ +C+ L  L  G++ + + ++  +  ++ L  AL+DM+ +CG ++ A  VFE
Sbjct: 249 ETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFE 308

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
                 D+++WSSI+ G  +HG  H+A+  +++M+ LG  P  +T   VLSAC   GL+ 
Sbjct: 309 GLP-ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVE 367

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +GLEIY ++   + I+P  E   C+VDMLGRAG+L  A +FI  M V+P+  I GAL+ A
Sbjct: 368 KGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGA 427

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             ++ N+E+ +     LI+++PE+   YV LSN+YA + +WD +  LR MMK++ +KK P
Sbjct: 428 CKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPP 487

Query: 497 GCSWISIHGKTHCFSVA-DKAHP 518
           G S I I GK + F++  D+ HP
Sbjct: 488 GWSLIEIDGKINKFTMGDDQKHP 510



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 122/270 (45%), Gaps = 40/270 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVS----------------------- 58
           T    ++ S+    + + +Q+HSQI+  G  ++ +V                        
Sbjct: 119 TFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQM 178

Query: 59  --------TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
                   T ++  Y  CG    ++ +F+ + H++++ ++ +INGY KN+   +A++LF 
Sbjct: 179 GFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFE 238

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M    V  ++  + ++      +  L  G   +   +K    V++IL  +L+ M+ +CG
Sbjct: 239 FMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCG 298

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-----RNVYAWT 225
              + +++F+ +P+ +  SW+  I G A  G      ++   F QM       R+V  +T
Sbjct: 299 DIEKAIHVFEGLPETDSLSWSSIIKGLAVHGH---AHKAMHYFSQMISLGFIPRDV-TFT 354

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
           A+++     G +++ L ++  M+    IEP
Sbjct: 355 AVLSACSHGGLVEKGLEIYENMKKDHGIEP 384


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/552 (32%), Positives = 293/552 (53%), Gaps = 38/552 (6%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T+ T  HF+ +    +++    Q H+QI+     S+  ++T+LI++ +L      S  VF
Sbjct: 77  TTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVF 136

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           N  + K+++ +N+LI G   N     A+  F  M  S + PD  T   + K    +    
Sbjct: 137 NHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTE 196

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGS----WNVR 193
           +GM IH + ++ G  +D  +  SL+ MYVK  K      +FDE P+R + GS    WNV 
Sbjct: 197 LGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVL 256

Query: 194 ISGHASSGDFSLVV----------------------------RSRRVFDQMKRRNVYAWT 225
           I G   +G     V                            R+  +FDQM  +NV +WT
Sbjct: 257 IKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWT 316

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
            M++G+ +NGD ++AL +F +M L++ + PN  ++VS L  C+ + GL  G +IH +   
Sbjct: 317 TMVDGFSRNGDSEKALSMFSKM-LEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKD 375

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
             L+   +L  AL+DMY+KCG+++ A  VF ++   K   TW+ ++ G+ +HG   +A+ 
Sbjct: 376 NGLHLTEALGTALVDMYAKCGNIESASEVFGETE-QKSIRTWTVMIWGWAIHGHSEQAIA 434

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
            + +M+  G KPD +  + +L+AC  SG ++ GL  ++S+   Y I+P+ +    +VDML
Sbjct: 435 CFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDML 494

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
           GR+GQL  AL FI+ MP+ P   IWGAL  A   H  ++M   A   L++LEP +  NY+
Sbjct: 495 GRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYI 554

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYE 525
            LSN YA+  +W+    +R +M++RG+ K+ G S I + G+ H F   D  H  S +I  
Sbjct: 555 FLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICL 614

Query: 526 MLDDLILIMRGA 537
            L++   IM GA
Sbjct: 615 KLEE---IMAGA 623


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/533 (33%), Positives = 288/533 (54%), Gaps = 48/533 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNS 80
           T+   L   +    L+  K+ H+  L  G +  N FV + L+  Y  C Q    + VF+ 
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNV 139
           +  + + L+N++I GY +N    EAL LF  M  S  +  +  T+A +          + 
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              IHG  +K G   D  + N+LM MY + GK                            
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI--------------------------- 456

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR------- 252
             D ++     R+F +M+ R++  W  MI GYV +   ++AL+L  +MQ  +R       
Sbjct: 457 --DIAM-----RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGAS 509

Query: 253 ---IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
              ++PN ++L+++LP+C++L  L+ GK+IH +AI+  L  DV++ +AL+DMY+KCG L 
Sbjct: 510 RVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQ 569

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            +R+VF D    K+ ITW+ I+  YG+HG G EA+ L   M+  G KP+ +T + V +AC
Sbjct: 570 MSRKVF-DQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAAC 628

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS- 428
             SG+++EGL I+  +   Y ++P+++  ACVVD+LGRAG++  A   +  MP + + + 
Sbjct: 629 SHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG 688

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
            W +L+ AS +H N E+ ++A ++LIQLEP   S+YV L+N+Y+S+  WD   E+R  MK
Sbjct: 689 AWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMK 748

Query: 489 DRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           ++G++K PGCSWI    + H F   D +HP S  +   L+ L   MR     P
Sbjct: 749 EQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVP 801



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 226/514 (43%), Gaps = 67/514 (13%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
            L+  A  + ++L KQ H+ +   G+ + +  V+  L+  Y  CG       VF+ I  +
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI---KDLNVGM 141
           +   +NSLI+          ALE F  M   NV P  FTL ++      +   + L +G 
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 222

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   ++ G +   I+ N+L++MY K GK +                            
Sbjct: 223 QVHAYGLRKGELNSFII-NTLVAMYGKLGKLAS--------------------------- 254

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  S+ +      R++  W  +++   QN  L EAL    EM L+  +EP++ ++ 
Sbjct: 255 -------SKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG-VEPDEFTIS 306

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           SVLP CS L  L  GK++H +A++   L+ +  + +AL+DMY  C  +   RRVF D  F
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF-DGMF 365

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLINEGL 379
           ++    W+++++GY  +    EA+LL+  M    G   +  T+ GV+ AC RSG  +   
Sbjct: 366 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 425

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            I+  V+    +     +   ++DM  R G++D A+     M  +     W  +++  V 
Sbjct: 426 AIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVF 483

Query: 440 HGNSE--------MQDLAYK-----SLIQLEPENPSNYVSLSNLYASSRRWDAVAELR-- 484
             + E        MQ+L  K     S + L+P    N ++L  +  S     A+A+ +  
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKP----NSITLMTILPSCAALSALAKGKEI 539

Query: 485 ---TMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
               +  +     + G + + ++ K  C  ++ K
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 182/404 (45%), Gaps = 55/404 (13%)

Query: 44  SQILSLGHISNPFV------STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           SQ+L      +P++      S     A A+ G P+    +F S Q +    +  L+   V
Sbjct: 19  SQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPS----IFIS-QSRSPEWWIDLLRSKV 73

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD-V 156
           +++   EA+  + +M    + PD++    + K   +++D+ +G  IH    K G+ VD V
Sbjct: 74  RSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSV 133

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            +AN+L+++Y KCG F     +FD + +RN  SWN  IS   S   + + + + R     
Sbjct: 134 TVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM--- 190

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI---GL 273
                                           L + +EP+  +LVSV+  CS+L    GL
Sbjct: 191 --------------------------------LDENVEPSSFTLVSVVTACSNLPMPEGL 218

Query: 274 SGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
             GKQ+H + +RK ELN  +   N L+ MY K G L  + +V   S   +D +TW++++S
Sbjct: 219 MMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKL-ASSKVLLGSFGGRDLVTWNTVLS 275

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
               + +  EA+    +MV  G +PD  TI  VL AC    ++  G E++   +    + 
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD 335

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
             + + + +VDM     Q+         M  +    +W A+++ 
Sbjct: 336 ENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 13/180 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   K+ H+  +     ++  V + L+  YA CG    S+ VF+
Sbjct: 517 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 576

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I  K+V  +N +I  Y  +    EA++L   M    V P++ T  ++          + 
Sbjct: 577 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACS-----HS 631

Query: 140 GMLIHGLSIKIGFVVDVILANS------LMSMYVKCGKFSECLNLFDEMPQ--RNVGSWN 191
           GM+  GL I      D  +  S      ++ +  + G+  E   L + MP+     G+W+
Sbjct: 632 GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 691


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/533 (33%), Positives = 288/533 (54%), Gaps = 48/533 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNS 80
           T+   L   +    L+  K+ H+  L  G +  N FV + L+  Y  C Q    + VF+ 
Sbjct: 217 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 276

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNV 139
           +  + + L+N++I GY +N    EAL LF  M  S  +  +  T+A +          + 
Sbjct: 277 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 336

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              IHG  +K G   D  + N+LM MY + GK                            
Sbjct: 337 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI--------------------------- 369

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR------- 252
             D ++     R+F +M+ R++  W  MI GYV +   ++AL+L  +MQ  +R       
Sbjct: 370 --DIAM-----RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGAS 422

Query: 253 ---IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
              ++PN ++L+++LP+C++L  L+ GK+IH +AI+  L  DV++ +AL+DMY+KCG L 
Sbjct: 423 RVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQ 482

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            +R+VF D    K+ ITW+ I+  YG+HG G EA+ L   M+  G KP+ +T + V +AC
Sbjct: 483 MSRKVF-DQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAAC 541

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS- 428
             SG+++EGL I+  +   Y ++P+++  ACVVD+LGRAG++  A   +  MP + + + 
Sbjct: 542 SHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG 601

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
            W +L+ AS +H N E+ ++A ++LIQLEP   S+YV L+N+Y+S+  WD   E+R  MK
Sbjct: 602 AWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMK 661

Query: 489 DRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           ++G++K PGCSWI    + H F   D +HP S  +   L+ L   MR     P
Sbjct: 662 EQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVP 714



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 226/514 (43%), Gaps = 67/514 (13%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
            L+  A  + ++L KQ H+ +   G+ + +  V+  L+  Y  CG       VF+ I  +
Sbjct: 16  LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 75

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI---KDLNVGM 141
           +   +NSLI+          ALE F  M   NV P  FTL ++      +   + L +G 
Sbjct: 76  NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 135

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   ++ G +   I+ N+L++MY K GK +                            
Sbjct: 136 QVHAYGLRKGELNSFII-NTLVAMYGKLGKLAS--------------------------- 167

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  S+ +      R++  W  +++   QN  L EAL    EM L+  +EP++ ++ 
Sbjct: 168 -------SKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG-VEPDEFTIS 219

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           SVLP CS L  L  GK++H +A++   L+ +  + +AL+DMY  C  +   RRVF D  F
Sbjct: 220 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF-DGMF 278

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLINEGL 379
           ++    W+++++GY  +    EA+LL+  M    G   +  T+ GV+ AC RSG  +   
Sbjct: 279 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 338

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            I+  V+    +     +   ++DM  R G++D A+     M  +     W  +++  V 
Sbjct: 339 AIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVF 396

Query: 440 HGNSE--------MQDLAYK-----SLIQLEPENPSNYVSLSNLYASSRRWDAVAELR-- 484
             + E        MQ+L  K     S + L+P    N ++L  +  S     A+A+ +  
Sbjct: 397 SEHHEDALLLLHKMQNLERKVSKGASRVSLKP----NSITLMTILPSCAALSALAKGKEI 452

Query: 485 ---TMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
               +  +     + G + + ++ K  C  ++ K
Sbjct: 453 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 486



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 149/325 (45%), Gaps = 44/325 (13%)

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD-VILANSLMSMYVKCGKFSEC 175
           + PD++    + K   +++D+ +G  IH    K G+ VD V +AN+L+++Y KCG F   
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
             +FD + +RN  SWN  IS   S   + + + + R                        
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM---------------------- 103

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI---GLSGGKQIHGFAIRK-ELNHD 291
                        L + +EP+  +LVSV+  CS+L    GL  GKQ+H + +RK ELN  
Sbjct: 104 -------------LDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSF 150

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           +   N L+ MY K G L  + +V   S   +D +TW++++S    + +  EA+    +MV
Sbjct: 151 I--INTLVAMYGKLGKL-ASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 207

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G +PD  TI  VL AC    ++  G E++   +    +   + + + +VDM     Q+
Sbjct: 208 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 267

Query: 412 DRALDFIKTMPVEPSPSIWGALVSA 436
                    M  +    +W A+++ 
Sbjct: 268 LSGRRVFDGM-FDRKIGLWNAMIAG 291



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 9/226 (3%)

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD-VSLCNALIDMYSKCGSLDCA 311
           I+P+  +  ++L   + L  +  GKQIH    +     D V++ N L+++Y KCG     
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
            +VF+  S  ++ ++W+S++S      K   A+  +  M+    +P   T+V V++AC  
Sbjct: 66  YKVFDRIS-ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 124

Query: 372 SGLINEGLEIYNSVINTYRIKP---TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
             +  EGL +    ++ Y ++     + I   +V M G+ G+L  +   + +       +
Sbjct: 125 LPM-PEGL-MMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVT 182

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            W  ++S S+      ++ L Y   + LE   P  +   S L A S
Sbjct: 183 -WNTVLS-SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS 226



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 13/180 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   K+ H+  +     ++  V + L+  YA CG    S+ VF+
Sbjct: 430 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 489

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I  K+V  +N +I  Y  +    EA++L   M    V P++ T  ++          + 
Sbjct: 490 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACS-----HS 544

Query: 140 GMLIHGLSIKIGFVVDVILANS------LMSMYVKCGKFSECLNLFDEMPQ--RNVGSWN 191
           GM+  GL I      D  +  S      ++ +  + G+  E   L + MP+     G+W+
Sbjct: 545 GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 604


>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 490

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/483 (35%), Positives = 275/483 (56%), Gaps = 12/483 (2%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVF 78
            + + H L  + T   L    Q H+  L  G H SN  +S  +    +L   P  +  +F
Sbjct: 9   ESKILHLLHNTKTQTHLP---QIHAHFLRHGLHHSNQILSHFVSVCTSLHQIPYATT-IF 64

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDL 137
           N   H ++ L+NS+I  +      +++   F+ M  + N+ PD+FT   + K +  ++D 
Sbjct: 65  NHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDY 124

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
           ++G  +H     +GF     +   L+ +Y  CGK  +   +FDEM  R V  WN+ I+G 
Sbjct: 125 DLGQCLHAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGF 184

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
              GD  + ++   +F +M +R+V +W  MI+   Q     EA  +F EM L+   EP+ 
Sbjct: 185 CKMGDLEIGLK---LFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREM-LEQGFEPDD 240

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV-SLCNALIDMYSKCGSLDCARRVFE 316
            +LV+VLP C+ L  +  G+ IH +A  K L   V S+ N+L+D Y KCG+L+ A +VF 
Sbjct: 241 ATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFN 300

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           + +  K+ ++W++++SG GL+GKG   V L+ KM   G  P   T VGVL+ C  +G ++
Sbjct: 301 EMT-KKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVD 359

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +G EI++S+   +++ P  E   CVVD+LGR G +  A D I+ MP+ P+ ++WGAL+SA
Sbjct: 360 KGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPLMPNAALWGALLSA 419

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
              HG+ E+ ++A K L++LEP N  NYV LSN+YA  R+W+ V ++R +M+  G+KK+P
Sbjct: 420 CRTHGDREVAEIAAKELVRLEPGNSGNYVLLSNVYAEERKWNEVEKVRVLMQGVGIKKNP 479

Query: 497 GCS 499
           G S
Sbjct: 480 GQS 482


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 169/486 (34%), Positives = 269/486 (55%), Gaps = 19/486 (3%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T ++  Y   G    ++ VF  +  K   ++N++I+GYV +    EA ELF  M    V 
Sbjct: 232 TTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVP 291

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSI-------KIGFVVDVILA--NSLMSMYVKC 169
            D+FT  ++          N G   HG S+       +  FV +  L   N+L+++Y KC
Sbjct: 292 LDEFTFTSVLSACA-----NAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKC 346

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           G  +    +FD M  ++V SWN  +SG+  S   S + ++  VF++M  +N  +W  M++
Sbjct: 347 GNIAVARRIFDNMKSKDVVSWNTILSGYVES---SCLDKAVEVFEEMPYKNELSWMVMVS 403

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           GYV  G  ++AL LF  M+ +D ++P   +    +  C  L  L  GKQ+HG  ++    
Sbjct: 404 GYVHGGFSEDALKLFNRMRAED-VKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFE 462

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
              S  NALI MY++CG++  A  +F     N D+++W++++S  G HG G EA+ L+++
Sbjct: 463 GSNSAGNALITMYARCGAVKEANLMFLVMP-NIDSVSWNAMISALGQHGHGREALELFDR 521

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           MV  G  PD I+ + VL+AC  SGL++EG + + S+   + I P  +    ++D+LGRAG
Sbjct: 522 MVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAG 581

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
           ++  A D IKTMP EP+PSIW A++S     G+ E+   A   L ++ P++   Y+ LSN
Sbjct: 582 RIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSN 641

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
            Y+++ RW   A +R +M+DRG+KK PGCSWI    K H F V D  HP +  +Y+ L+ 
Sbjct: 642 TYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEM 701

Query: 530 LILIMR 535
           +   MR
Sbjct: 702 VGARMR 707



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 197/464 (42%), Gaps = 116/464 (25%)

Query: 55  PFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNSLINGYVKNHGHNEALELFSNM 112
           P  +T L+ AYA  G+   +   F+++    +D  L+N++I+ Y +      A+ +F ++
Sbjct: 88  PVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSL 147

Query: 113 YYS-NVSPDDFTLATISKLSGEIKDLNV----GMLIHGLSIKIGFVVDVILANSLMSMYV 167
             S ++ PDD++   +   +G + +++V     +    L    G V+ V  +N+L+++Y+
Sbjct: 148 LASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSV--SNALVALYM 205

Query: 168 KCGKFS---ECLNLFDEMPQRN----------------VGS---------------WNVR 193
           KC       +   + DEMP ++                VG+               WN  
Sbjct: 206 KCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAM 265

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           ISG                                  YV +G + EA  LF  M L +R+
Sbjct: 266 ISG----------------------------------YVHSGMVVEAFELFRRMVL-ERV 290

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH----DVSLCNALIDMYSKCGSLD 309
             ++ +  SVL  C++    + GK +HG   R + N      + + NAL+ +YSKCG++ 
Sbjct: 291 PLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIA 350

Query: 310 CARRVFEDSSFNKDAITWSSIVSGY------------------------------GLHGK 339
            ARR+F D+  +KD ++W++I+SGY                               +HG 
Sbjct: 351 VARRIF-DNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGG 409

Query: 340 GHE-AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
             E A+ L+N+M     KP   T  G +SACG  G +  G +++  ++     + +    
Sbjct: 410 FSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQ-LGFEGSNSAG 468

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
             ++ M  R G +  A      MP   S S W A++SA   HG+
Sbjct: 469 NALITMYARCGAVKEANLMFLVMPNIDSVS-WNAMISALGQHGH 511



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 131/314 (41%), Gaps = 77/314 (24%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           V+  L+T Y+ CG    ++ +F++++ KDV  +N++++GYV++   ++A+E+F  M Y N
Sbjct: 335 VNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKN 394

Query: 117 -------------------------------VSPDDFTLATISKLSGEIKDLNVGMLIHG 145
                                          V P D+T A      GE+  L  G  +HG
Sbjct: 395 ELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHG 454

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             +++GF       N+L++MY +CG   E   +F  MP  +  SWN              
Sbjct: 455 HLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWN-------------- 500

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                               AMI+   Q+G   EAL LF  M + + I P+++S ++VL 
Sbjct: 501 --------------------AMISALGQHGHGREALELFDRM-VAEGIYPDRISFLTVLT 539

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA------LIDMYSKCGSLDCARRVFEDSS 319
            C+       G    GF   + +  D  +         LID+  + G +  AR + +   
Sbjct: 540 ACN-----HSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMP 594

Query: 320 FNKDAITWSSIVSG 333
           F      W +I+SG
Sbjct: 595 FEPTPSIWEAILSG 608



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 18/254 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SLK  KQ H  ++ LG   +      LIT YA CG   ++ L+F  + + D   +N++I+
Sbjct: 445 SLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMIS 504

Query: 95  GYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGF 152
             +  HGH  EALELF  M    + PD  +  T+         ++ G      +    G 
Sbjct: 505 A-LGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGI 563

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISGHASSGDFSLVVRSRR 211
           +        L+ +  + G+  E  +L   MP     S W   +SG  +SGD  L   +  
Sbjct: 564 IPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAAD 623

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGD-LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
              +M  ++   +  + N Y   G  +D A V  L   ++DR        V   P CS  
Sbjct: 624 QLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKL---MRDRG-------VKKEPGCS-- 671

Query: 271 IGLSGGKQIHGFAI 284
             +  G ++H F +
Sbjct: 672 -WIEAGNKVHVFVV 684


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 180/514 (35%), Positives = 267/514 (51%), Gaps = 37/514 (7%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV- 117
           T L+T  A CG+ T+++++F  I    V  +N++I GY++N   +EA ELF  M + N  
Sbjct: 325 TALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTI 384

Query: 118 --------------SPDDFTLATISKLSG----------------EIKDLNVGMLIHGLS 147
                         S +   L      +G                 I  L  G  +H L+
Sbjct: 385 SWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLA 444

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           +K G   +  + N+L+SMY KC        +F+ M  ++  SWN  I+    +   +++ 
Sbjct: 445 VKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQN---NMLE 501

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            +R +FD M  R+V +WT +I+ Y Q    DEA V F +  L +  +PN   L  +L  C
Sbjct: 502 DARHIFDNMLSRDVVSWTTIISAYAQAERGDEA-VEFFKTMLHEHEKPNSPILTILLSVC 560

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
             L     G+QIH  AI+  ++ ++ + NAL+ MY KCG  D + +VF DS   +D  TW
Sbjct: 561 GGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVF-DSMEERDIFTW 618

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++ ++G   HG G EA+ +Y  M  +G  P+ +T VG+L+AC  +GL++EG + + S+  
Sbjct: 619 NTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSR 678

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            Y + P  E  AC+VD+LGR G +  A  FI  MP+EP   IW AL+ A  +H N+E+  
Sbjct: 679 DYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGR 738

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A + L   EP N  NYV LSN+Y+S   W  VAELR +MK RG+ K PGCSW+ I  K 
Sbjct: 739 RAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKV 798

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           H F   DK H     I   L DL  ++RG    P
Sbjct: 799 HSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVP 832



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 192/419 (45%), Gaps = 41/419 (9%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L V + HR+L   K +HS                 I   A  G+  +++ VF+++ H+D+
Sbjct: 22  LPVRSVHRALD--KSAHS---------------ARIRELARLGRLREAREVFDAMPHRDI 64

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NS+I+ Y  +    +A  LF  +   NV      L+  ++L    + L+   +  G+
Sbjct: 65  IAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYARLG---RVLDARRVFDGM 121

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
             +     + +  N+++S YV+ G  +    LFD MP R+V SWN  ++G+  S     +
Sbjct: 122 PER-----NTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQ---M 173

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
           V +  +F QM +RN+  WT MI+GYV+     +   +F  M   +   P++ +  SVL  
Sbjct: 174 VDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIF-RMMHHEGASPDQSNFASVLSA 232

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS-LDCARRVFEDSSFNKDAI 325
            + L  L   + +    ++     DV +  +++++Y++  S LD A + F D    ++  
Sbjct: 233 VTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFF-DGMVERNEY 291

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           TWS++++     G+   A+ +Y +   + S P    ++  L+ CGR   I E   ++  +
Sbjct: 292 TWSTMIAALSHGGRIDAAIAVYGRDP-VKSIPSQTALLTGLARCGR---ITEARILFEQI 347

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            +     P       ++    + G +D A +    MP   + S W  +++    +G SE
Sbjct: 348 PD-----PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTIS-WAGMIAGYAQNGRSE 400



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 138/340 (40%), Gaps = 78/340 (22%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  +Q HS  +  G   N +V   LI+ Y  C      + VFN ++ KD   +NS I 
Sbjct: 433 ALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIA 492

Query: 95  GYVKNH-------------------------------GHNEALELFSNMYYSNVSPDDFT 123
             V+N+                                 +EA+E F  M + +  P+   
Sbjct: 493 ALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPI 552

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           L  +  + G +    +G  IH ++IK G   ++I+AN+LMSMY KCG  ++   +FD M 
Sbjct: 553 LTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSME 611

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
           +R++ +WN  I+G A                                  Q+G   EA+ +
Sbjct: 612 ERDIFTWNTFITGCA----------------------------------QHGLGREAIKM 637

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL----- 298
           +  M+    + PN+V+ V +L  CS       G    G+   K ++ D  L   L     
Sbjct: 638 YEHMESVG-VLPNEVTFVGLLNACS-----HAGLVDEGWQFFKSMSRDYGLTPLLEHYAC 691

Query: 299 -IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            +D+  + G +  A +   D     D + WS+++    +H
Sbjct: 692 MVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIH 731


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/481 (34%), Positives = 271/481 (56%), Gaps = 37/481 (7%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
            + T L+  YA C     +  VF+ +  ++   +++LI G+V      EA  LF +M   
Sbjct: 240 LIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVE 299

Query: 116 NVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
            +     T +A+  ++   + DL +G  +H L  K G   D+   NSL+SMY K G  +E
Sbjct: 300 GMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINE 359

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
              LFDE+  ++  S+                                   A+++GYVQN
Sbjct: 360 ATMLFDEIAIKDTISYG----------------------------------ALLSGYVQN 385

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G  +EA ++F +MQ  + ++P+  ++VS++P CS L  L  G+  HG  I + L  + S+
Sbjct: 386 GKAEEAFLVFKKMQACN-VQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSI 444

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
           CN+LIDMY+KCG +D +R+VF D    +D ++W+++++GYG+HG G EA  L+  M   G
Sbjct: 445 CNSLIDMYAKCGRIDLSRQVF-DKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQG 503

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
            +PD +T + +++AC  SGL+ EG   ++++ + Y I P  E   C+VD+L R G LD A
Sbjct: 504 FEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEA 563

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
             FI++MP++    +WGAL+ A  +H N ++     + + +L PE   N+V LSN+++++
Sbjct: 564 YQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAA 623

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
            R+D  AE+R + K +G KKSPGCSWI I+G  H F   D++HPCS  IY  LD++++ +
Sbjct: 624 GRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDI 683

Query: 535 R 535
           +
Sbjct: 684 K 684



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 180/389 (46%), Gaps = 41/389 (10%)

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
           GQ   ++ VF+ I   D   YN+LI  Y      + A++L+ +M Y  V P+ +T   + 
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           K    + DL  G  IH  +  +G   D+ ++ +L+ +Y++C +F    N+F +MP R+V 
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           +WN                                  AM+ GY  +G    A+   L+MQ
Sbjct: 167 AWN----------------------------------AMLAGYANHGMYHHAIAHLLDMQ 192

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD---VSLCNALIDMYSKC 305
            +  + PN  +LVS+LP  +    L  G  +H + +R  L+ +   V +  AL+DMY+KC
Sbjct: 193 DRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKC 252

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVG 364
             L  A RVF   +  ++ +TWS+++ G+ L  +  EA  L+  M+  G       ++  
Sbjct: 253 KHLVYACRVFHGMTV-RNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVAS 311

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
            L  C     +  G +++ +++    I         ++ M  +AG ++ A      + ++
Sbjct: 312 ALRVCASLADLRMGTQLH-ALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIK 370

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSL 453
            + S +GAL+S  V +G +E   L +K +
Sbjct: 371 DTIS-YGALLSGYVQNGKAEEAFLVFKKM 398



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 168/390 (43%), Gaps = 54/390 (13%)

Query: 3   LSSARNTFA--LVTSRNYTSAT-VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           ++ A N F   LV    + SAT V   L+V A+   L++  Q H+ +   G  ++     
Sbjct: 286 MTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGN 345

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            L++ YA  G   ++ ++F+ I  KD   Y +L++GYV+N    EA  +F  M   NV P
Sbjct: 346 SLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQP 405

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D  T+ ++      +  L  G   HG  I  G  ++  + NSL+ MY KCG+      +F
Sbjct: 406 DIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVF 465

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D+MP R++ SWN                                   MI GY  +G   E
Sbjct: 466 DKMPARDIVSWNT----------------------------------MIAGYGIHGLGKE 491

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSL 294
           A  LFL M+     EP+ V+ + ++  CS    ++ GK       H + I   + H +  
Sbjct: 492 ATTLFLSMK-NQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYI-- 548

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHEAVLLYNKMV 351
              ++D+ ++ G LD A +  +      D   W +++    +H     G +   +  K+ 
Sbjct: 549 --CMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLG 606

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEI 381
             G+  + + +  + SA GR    +E  E+
Sbjct: 607 PEGTG-NFVLLSNIFSAAGR---FDEAAEV 632



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 115/281 (40%), Gaps = 33/281 (11%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  + SH  ++  G      +   LI  YA CG+   S+ VF+ +  +D+  +N++I 
Sbjct: 422 ALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIA 481

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHG------LS 147
           GY  +    EA  LF +M      PDD T +  I+  S      + G++  G      ++
Sbjct: 482 GYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACS------HSGLVTEGKHWFDTMT 535

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLV 206
            K G +  +     ++ +  + G   E       MP + +V  W   +       +  L 
Sbjct: 536 HKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLG 595

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
            +  R+  ++       +  + N +   G  DEA     E+++  +++  K S     P 
Sbjct: 596 KQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEA----AEVRIIQKVKGFKKS-----PG 646

Query: 267 CS------SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
           CS      SL    GG Q H      ++ H++   N LID+
Sbjct: 647 CSWIEINGSLHAFVGGDQSH--PCSPDIYHELD--NILIDI 683


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/493 (32%), Positives = 279/493 (56%), Gaps = 37/493 (7%)

Query: 52  ISNPFVSTKLI-TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           ++NP +   LI T  + C   + +  +F+ IQ+ +++ +N++I GY ++     ALEL+ 
Sbjct: 70  LTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYR 129

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M+ S + PD  T   + K   ++ D+  G  +H ++I+ GF   V + N+L+ MY  CG
Sbjct: 130 QMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACG 189

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
                                     HA S        + ++F+ M  RN+  W ++ING
Sbjct: 190 --------------------------HAES--------AHKLFELMAERNLVTWNSVING 215

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           Y  NG  +EAL LF EM L+  +EP+  ++VS+L  C+ L  L+ G++ H + ++  L+ 
Sbjct: 216 YALNGRPNEALTLFREMGLRG-VEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDG 274

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           ++   NAL+D+Y+KCGS+  A +VF++    K  ++W+S++ G  ++G G EA+ L+ ++
Sbjct: 275 NLHAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLIVGLAVNGFGKEALELFKEL 333

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G  P  IT VGVL AC   G+++EG + +  +   Y I P  E   C+VD+LGRAG 
Sbjct: 334 ERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGL 393

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           + +A +FI+ MP++P+  +W  L+ A  +HG+  + ++A   L+QLEP++  +YV LSNL
Sbjct: 394 VKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNL 453

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YAS +RW  V ++R  M   G+KK+PG S + +  + H F + D++HP +  IY  L ++
Sbjct: 454 YASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEI 513

Query: 531 ILIMRGAAASPHL 543
             +++     PH+
Sbjct: 514 TKLLKLEGYVPHI 526



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 139/323 (43%), Gaps = 46/323 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  A    ++  ++ HS  +  G  S  FV   L+  YA CG    +  +F  +
Sbjct: 142 TYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELM 201

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +++  +NS+INGY  N   NEAL LF  M    V PD FT+ ++     E+  L +G 
Sbjct: 202 AERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGR 261

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
             H   +K+G   ++   N+L+ +Y KCG   +   +FDEM +++V SW           
Sbjct: 262 RAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSW----------- 310

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  T++I G   NG   EAL LF E++ K  + P++++ V
Sbjct: 311 -----------------------TSLIVGLAVNGFGKEALELFKELERKG-LMPSEITFV 346

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC------NALIDMYSKCGSLDCARRVF 315
            VL  CS       G    GF   K +  +  +         ++D+  + G +  A    
Sbjct: 347 GVLYACSHC-----GMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFI 401

Query: 316 EDSSFNKDAITWSSIVSGYGLHG 338
           ++     +A+ W +++    +HG
Sbjct: 402 QNMPMQPNAVVWRTLLGACTIHG 424


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 287/513 (55%), Gaps = 39/513 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNS 91
           R +   K+     L LG  SN  V T LI   + CG   +++ +FNS  I  +    +N+
Sbjct: 286 RDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNA 345

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I+GY+++  + +ALELF+ M  +++  D +T  ++      +K L++G  +H  +IK G
Sbjct: 346 MISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSG 405

Query: 152 FVVDVI-LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
             V+ + ++N++ + Y KCG   +                                   R
Sbjct: 406 LEVNYVSISNAVANAYAKCGSLEDV----------------------------------R 431

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           +VF++M+ R++ +WT+++  Y Q  + D+A+ +F  M+  + I PN+ +  SVL +C++L
Sbjct: 432 KVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMR-AEGIAPNQFTFSSVLVSCANL 490

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G+Q+HG   +  L+ D  + +AL+DMY+KCG L  A++VF   S N D ++W++I
Sbjct: 491 CLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAI 549

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++G+  HG   +A+ L+ +MV LG +P+ +T + VL AC   GL+ EGL+ +  +  TY 
Sbjct: 550 IAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYG 609

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           + P  E  AC+VD+L R G L+ A++FI  MPVEP+  +W  L+ A  +HGN E+ +LA 
Sbjct: 610 LVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAA 669

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + ++  + EN + YV LSN Y  S  +     LR +MK++G+KK PGCSWIS++G  H F
Sbjct: 670 QKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKF 729

Query: 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
              D+ HP    IY  L++L L +      P L
Sbjct: 730 YAGDQQHPEKDKIYAKLEELKLKLISLDDVPDL 762



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 217/510 (42%), Gaps = 86/510 (16%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LK    +H  ++ L H+++         AY+ C     +  +F+ +  ++ + +  LI G
Sbjct: 95  LKSKFSNHHSLVLLNHVAH---------AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAG 145

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
             +N    +  E F  M    + PD F  + I ++   +  + +G ++H   +  GF   
Sbjct: 146 LAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSH 205

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS----GDFSLVVRSR- 210
             ++ +L++MY K  +  +   +F+ M + NV SWN  I+G  S+      F L +R   
Sbjct: 206 TFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMG 265

Query: 211 --------------------RVFDQMKRRNVYAW-----------TAMINGYVQNGDLDE 239
                               R  ++ K  + YA            TA+I+   + G L E
Sbjct: 266 EGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQE 325

Query: 240 A---------------------------------LVLFLEMQLKDRIEPNKVSLVSVLPT 266
           A                                 L LF +M   D I  +  +  SV   
Sbjct: 326 ARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQND-IYLDHYTYCSVFNA 384

Query: 267 CSSLIGLSGGKQIHGFAIRK--ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            ++L  LS GK++H  AI+   E+N+ VS+ NA+ + Y+KCGSL+  R+VF     ++D 
Sbjct: 385 IAALKCLSLGKKVHARAIKSGLEVNY-VSISNAVANAYAKCGSLEDVRKVFNRME-DRDL 442

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           I+W+S+V+ Y    +  +A+ +++ M   G  P+  T   VL +C    L+  G +++  
Sbjct: 443 ISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVH-G 501

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +I    +     I + +VDM  + G L  A      +    + S W A+++    HG  +
Sbjct: 502 IICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVS-WTAIIAGHAQHGIVD 560

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
                ++ ++QL  E P+    L  L+A S
Sbjct: 561 DALQLFRRMVQLGVE-PNAVTFLCVLFACS 589



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 141/314 (44%), Gaps = 45/314 (14%)

Query: 31  ATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
           A  + L L K+ H++ +  G  ++   +S  +  AYA CG     + VFN ++ +D+  +
Sbjct: 386 AALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISW 445

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
            SL+  Y +    ++A+E+FSNM    ++P+ FT +++      +  L  G  +HG+  K
Sbjct: 446 TSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICK 505

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           +G  +D  + ++L+ MY KCG   +   +F+ +   +  SW   I+GHA           
Sbjct: 506 VGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHA----------- 554

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
                                  Q+G +D+AL LF  M ++  +EPN V+ + VL  CS 
Sbjct: 555 -----------------------QHGIVDDALQLFRRM-VQLGVEPNAVTFLCVLFACSH 590

Query: 270 LIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
              +  G Q        + +  E+ H       ++D+ S+ G L+ A           + 
Sbjct: 591 GGLVEEGLQYFKLMKKTYGLVPEMEHYA----CIVDLLSRVGHLNDAMEFISRMPVEPNE 646

Query: 325 ITWSSIVSGYGLHG 338
           + W +++    +HG
Sbjct: 647 MVWQTLLGACRVHG 660



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 139/299 (46%), Gaps = 17/299 (5%)

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           R+FDQM +RN ++WT +I G  +NG   +    F EMQ    I P++ +   +L  C  L
Sbjct: 126 RLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQ-SQGIFPDQFAYSGILQICIGL 184

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             +  G  +H   + +       +  AL++MY+K   ++ + +VF ++    + ++W+++
Sbjct: 185 DSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVF-NTMTEVNVVSWNAM 243

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++G+  +    +A  L+ +M+  G  PD  T +GV  A G    +N+  E+    +    
Sbjct: 244 ITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALEL-G 302

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS-PSIWGALVSASVMHGNSEMQDLA 449
           +   T +   ++DM  + G L  A     +  +     + W A++S  +  G +E     
Sbjct: 303 VDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNE----- 357

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM-----MKDRGLKKSPGCSWISI 503
               ++L  +   N + L + Y     ++A+A L+ +     +  R +K     +++SI
Sbjct: 358 --KALELFAKMCQNDIYLDH-YTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSI 413



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 15/190 (7%)

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL--NHDVSLCNALIDMYSKCGSLD 309
           +I+P    LV +L  C     L   K +HGF ++ +   +H + L N +   YSKC  +D
Sbjct: 67  QIQP----LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDID 122

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            A R+F+  S  ++  +W+ +++G   +G   +    + +M   G  PD     G+L  C
Sbjct: 123 AACRLFDQMS-QRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQIC 181

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTE---ICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
              GL  + +E+ N V     I+  T    +   +++M  +  +++ +     TM  E +
Sbjct: 182 --IGL--DSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM-TEVN 236

Query: 427 PSIWGALVSA 436
              W A+++ 
Sbjct: 237 VVSWNAMITG 246


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 264/477 (55%), Gaps = 36/477 (7%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N  +   LI     C +   S+ +F  +Q KD   + ++I G+ +N    EA++LF  M 
Sbjct: 207 NVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMR 266

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
             N+  D +T  ++    G +  L  G  +H   I+  +  ++ + ++L+ MY KC    
Sbjct: 267 LENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKS-- 324

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
                                           +  +  VF +M  +NV +WTAM+ GY Q
Sbjct: 325 --------------------------------IKSAETVFRKMNCKNVVSWTAMLVGYGQ 352

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           NG  +EA+ +F +MQ  + IEP+  +L SV+ +C++L  L  G Q H  A+   L   ++
Sbjct: 353 NGYSEEAVKIFCDMQ-NNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFIT 411

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           + NAL+ +Y KCGS++ + R+F + S+  D ++W+++VSGY   GK +E + L+  M+  
Sbjct: 412 VSNALVTLYGKCGSIEDSHRLFSEMSY-VDEVSWTALVSGYAQFGKANETLRLFESMLAH 470

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G KPD +T +GVLSAC R+GL+ +G +I+ S+I  +RI P  +   C++D+  RAG+L+ 
Sbjct: 471 GFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEE 530

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A  FI  MP  P    W +L+S+   H N E+   A +SL++LEP N ++Y+ LS++YA+
Sbjct: 531 ARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAA 590

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
             +W+ VA LR  M+D+GL+K PGCSWI    + H FS  D+++P S  IY  L+ L
Sbjct: 591 KGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKL 647



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 219/448 (48%), Gaps = 39/448 (8%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
           TK+ H  I+        F+   L++AYA   + T ++ VF+ +  +++Y +N+L++ Y K
Sbjct: 28  TKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSK 87

Query: 99  NHGHNEALELFSNM--------------------------------YYSNVSPDDFTLAT 126
                E   +F  M                                Y    + +   L+T
Sbjct: 88  LACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALST 147

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +  L+ +   +++G+ +HG  +K GF   V + + L+ MY K G        FDEMP++N
Sbjct: 148 MLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKN 207

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           V  +N  I+G       S +  SR++F  M+ ++  +WTAMI G+ QNG   EA+ LF E
Sbjct: 208 VVMYNTLIAGLMRC---SRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFRE 264

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           M+L++ +E ++ +  SVL  C  ++ L  GKQ+H + IR +   ++ + +AL+DMY KC 
Sbjct: 265 MRLEN-LEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCK 323

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
           S+  A  VF   +  K+ ++W++++ GYG +G   EAV ++  M   G +PD  T+  V+
Sbjct: 324 SIKSAETVFRKMN-CKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVI 382

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           S+C     + EG + +   + +  I   T +   +V + G+ G ++ +      M     
Sbjct: 383 SSCANLASLEEGAQFHCRALVSGLISFIT-VSNALVTLYGKCGSIEDSHRLFSEMSYVDE 441

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLI 454
            S W ALVS     G +      ++S++
Sbjct: 442 VS-WTALVSGYAQFGKANETLRLFESML 468



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 40/306 (13%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  KQ H+ I+   +  N FV + L+  Y  C     ++ VF  +  K+V  + +++ 
Sbjct: 289 ALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLV 348

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY +N    EA+++F +M  + + PDDFTL ++      +  L  G   H  ++  G + 
Sbjct: 349 GYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLIS 408

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
            + ++N+L+++Y KCG   +   LF EM   +  SW   +S                   
Sbjct: 409 FITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVS------------------- 449

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                          GY Q G  +E L LF E  L    +P+KV+ + VL  CS    + 
Sbjct: 450 ---------------GYAQFGKANETLRLF-ESMLAHGFKPDKVTFIGVLSACSRAGLVQ 493

Query: 275 GGKQIHGFAIRKEL---NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            G QI    I++       D   C  +ID++S+ G L+ AR+      F+ DAI W+S++
Sbjct: 494 KGNQIFESMIKEHRIIPIEDHYTC--MIDLFSRAGRLEEARKFINKMPFSPDAIGWASLL 551

Query: 332 SGYGLH 337
           S    H
Sbjct: 552 SSCRFH 557



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 33/201 (16%)

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED--------- 317
           C  L      K+IH   I+   N ++ L N L+  Y+K   +  ARRVF+          
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 318 ----SSFNK-----------------DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS- 355
               SS++K                 D ++W+S++S Y   G   ++V  YN M+  G  
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
             + I +  +L    + G ++ GL+++  V+  +  +    + + +VDM  + G +  A 
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVK-FGFQSYVFVGSPLVDMYSKTGLVFCAR 197

Query: 416 DFIKTMPVEPSPSIWGALVSA 436
                MP E +  ++  L++ 
Sbjct: 198 QAFDEMP-EKNVVMYNTLIAG 217


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 188/591 (31%), Positives = 293/591 (49%), Gaps = 69/591 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L V A+   L L  Q H   +S G   +  V+  L+  Y+ C     ++ +F+
Sbjct: 159 SVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFD 218

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           +    D+  +N +I+GYV+N    EA  LF  M  + + PD  T A+      E+  L  
Sbjct: 219 TSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKH 278

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKC------------------------------ 169
              IHG  I+   V+DV L ++L+ +Y KC                              
Sbjct: 279 CKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVL 338

Query: 170 -GKFSECLNLFDEMPQRNVGSWNVRISG------------------------------HA 198
            GK  E L  F  + Q  +   +V  S                               H 
Sbjct: 339 NGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHV 398

Query: 199 SSGDFSLVVRSRR------VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            S    +  +  R      VF+++  ++   W +MI    QNG   EA+ LF +M ++  
Sbjct: 399 GSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEG- 457

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
              + VS+   L  C++L  L  GK+IHG  I+  L  D+   ++LIDMY+KCG+L+ +R
Sbjct: 458 TRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSR 517

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           RVF D    ++ ++W+SI+S YG HG   E + L+++M+  G +PD +T +G++SACG +
Sbjct: 518 RVF-DRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHA 576

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           G ++EG+  Y+ +   Y I    E  ACV DM GRAG+LD A + I +MP  P   +WG 
Sbjct: 577 GQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGT 636

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
           L+ A  +HGN E+ ++A K L  L+P N   YV L+N+ A + +W  V ++R++MK+RG+
Sbjct: 637 LLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGV 696

Query: 493 KKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           +K PG SWI ++  TH F  AD +HP +  IY +LD L+L ++     P L
Sbjct: 697 RKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYVPQL 747



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 212/421 (50%), Gaps = 40/421 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  + ++     +S+K+ K  H  +  +G   + FV + LI  YA  G  + +Q +F++I
Sbjct: 60  TFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD  L+N ++NGYVKN     A+++F  M +S + P+  T A +  +      L++G 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HG+++  G  +D  +AN+L++MY KC        LFD  PQ ++ SWN          
Sbjct: 180 QLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWN---------- 229

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                    +I+GYVQNG + EA  LF  M +   I+P+ ++  
Sbjct: 230 ------------------------GIISGYVQNGLMGEAEHLFRGM-ISAGIKPDSITFA 264

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF-EDSSF 320
           S LP  + L+ L   K+IHG+ IR  +  DV L +ALID+Y KC  ++ A+++  + SSF
Sbjct: 265 SFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSF 324

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
             D +  ++++SGY L+GK  EA+  +  +V    KP  +T   +  A      +N G E
Sbjct: 325 --DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKE 382

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           ++ S+I T ++     + + ++DM  + G+LD A      +  E     W +++++   +
Sbjct: 383 LHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLACRVFNRI-TEKDAICWNSMITSCSQN 440

Query: 441 G 441
           G
Sbjct: 441 G 441



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 197/418 (47%), Gaps = 58/418 (13%)

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y   G    ++ +F ++Q      +N +I G+      N AL  +  M  + VSPD +T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
             + K    +K + +G ++H     +G   DV + +SL+ +Y + G  S+   LFD +PQ
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           +                                  +   W  M+NGYV+NGD   A+ +F
Sbjct: 122 K----------------------------------DSVLWNVMLNGYVKNGDSGNAIKIF 147

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
           LEM+    I+PN V+   VL  C+S   L  G Q+HG A+   L  D  + N L+ MYSK
Sbjct: 148 LEMR-HSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSK 206

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           C  L  AR++F D+S   D ++W+ I+SGY  +G   EA  L+  M+  G KPD IT   
Sbjct: 207 CQCLQAARKLF-DTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFAS 265

Query: 365 VLSACGRSGLINEGLEI-YNSVINTYRIKPTTEICACVVDMLGRAGQLD-----RALDFI 418
            L        +NE L + +   I+ Y I+      A V+D+  ++  +D     R ++  
Sbjct: 266 FLPC------VNELLSLKHCKEIHGYIIRH-----AVVLDVFLKSALIDIYFKCRDVEMA 314

Query: 419 KTMPVEPS---PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           + +  + S     +   ++S  V++G ++    A++ L+Q E   P++ V+ S+++ +
Sbjct: 315 QKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQ-ERMKPTS-VTFSSIFPA 370



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 132/325 (40%), Gaps = 44/325 (13%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           TS T        A   +L L K+ H  I+         V + ++  YA CG+   +  VF
Sbjct: 360 TSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVF 419

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           N I  KD   +NS+I    +N    EA+ LF  M       D  +++        +  L+
Sbjct: 420 NRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALH 479

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  IHGL IK     D+   +SL+ MY KCG  +    +FD M +RN  SWN       
Sbjct: 480 YGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWN------- 532

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                      ++I+ Y  +GDL E L LF EM L++ I+P+ V
Sbjct: 533 ---------------------------SIISAYGNHGDLKECLALFHEM-LRNGIQPDHV 564

Query: 259 SLVSVLPTCSSLIGLSGGKQIH-----GFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           + + ++  C     +  G + +      + I   + H       + DM+ + G LD A  
Sbjct: 565 TFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYA----CVADMFGRAGRLDEAFE 620

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHG 338
                 F  DA  W +++    +HG
Sbjct: 621 TINSMPFPPDAGVWGTLLGACHIHG 645



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 5/201 (2%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           Y   ++   L   A   +L   K+ H  ++     S+ +  + LI  YA CG    S+ V
Sbjct: 460 YDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRV 519

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           F+ +Q ++   +NS+I+ Y  NHG   E L LF  M  + + PD  T   I    G    
Sbjct: 520 FDRMQERNEVSWNSIISAY-GNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQ 578

Query: 137 LNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRI 194
           ++ G+   H ++ + G    +     +  M+ + G+  E     + MP   + G W   +
Sbjct: 579 VDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLL 638

Query: 195 SGHASSGDFSLV-VRSRRVFD 214
                 G+  L  V S+ +FD
Sbjct: 639 GACHIHGNVELAEVASKHLFD 659


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 169/518 (32%), Positives = 287/518 (55%), Gaps = 9/518 (1%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNS 91
           +S+   KQ+H+ +++ G I +P  + KL+        G  + +  +F+ I   DV++YN+
Sbjct: 26  KSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNT 85

Query: 92  LINGY--VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           +I  +  +    HN      S +  S   P+ +T   + K  G    +  G  I   +IK
Sbjct: 86  MIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIK 145

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           IG   ++ + N+++ MY   G   E   +FD    +++ SWN+ I G+  SG+   + R+
Sbjct: 146 IGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGE---IGRA 202

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           + +FD+M  R+V +WT +I GYVQ G   EAL LF EM L+    PN+ +L S L  C++
Sbjct: 203 KEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEM-LQTGPPPNEFTLASALAACAN 261

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI-TWS 328
           L+ L  G+ IH +  + E+  +  L  +L+DMY+KCG +D A +VF D    K  +  W+
Sbjct: 262 LVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWN 321

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++ GY +HGK  EA+ L+ +M      P+ +T V +L+AC    L+ EG   + S+ ++
Sbjct: 322 AMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASS 381

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           Y I+P  E   C+VD+LGR+G L  A + +  MP+ P  +IWGAL+ A  +H + E    
Sbjct: 382 YGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQR 441

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
             K + +L+ ++   +V L+NLY++S +WD    +R  ++  G KK+PGCS I ++G  H
Sbjct: 442 IGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFH 501

Query: 509 CFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
            F V D++HP +  +Y  LD++   ++ A   P  G++
Sbjct: 502 QFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEV 539


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 190/579 (32%), Positives = 307/579 (53%), Gaps = 72/579 (12%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNS 80
           T+   L+  A  R L+L K  H        I S+ FV + L+  Y+ CGQ  ++  VF  
Sbjct: 105 TIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEE 164

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNV 139
            Q  D  L+ S++ GY +N+   EAL LFS M   + V  D  TL ++     ++ ++  
Sbjct: 165 FQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKA 224

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCG----------------------------- 170
           G  +HGL I+  F  D+ L NSL+++Y K G                             
Sbjct: 225 GSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYAN 284

Query: 171 --KFSECLNLFDEMPQRNVGSWNVRI---------SGHASSG--------------DFSL 205
               +E LNLF EM ++     +V +         S +   G              DFS+
Sbjct: 285 NEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSV 344

Query: 206 VV-------------RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                           +  +F ++ +++V +W A+++GY QNG   +++ +F  M L D 
Sbjct: 345 STALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNM-LSDG 403

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           I+P+ V++V +L   S L        +HG+ +R   N +V +  +LI++YSKCGSL  A 
Sbjct: 404 IQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAV 463

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGR 371
           ++F+     +D + WSS+++ YG+HG+G EA+ ++++MV   + +P+ +T + +LSAC  
Sbjct: 464 KLFK-GMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSH 522

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           +GL+ EGL+I++ +++ Y+++P +E    +VD+LGR GQL +A+D I  MP+   P +WG
Sbjct: 523 AGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWG 582

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
           AL+ A  +H N EM + A K+L  L+P +   Y+ LSN+YA   +WD VAELRT +K+RG
Sbjct: 583 ALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERG 642

Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           LKK  G S + + G  H F  +D+ HP S  IYE+L  L
Sbjct: 643 LKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKL 681



 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 175/541 (32%), Positives = 274/541 (50%), Gaps = 57/541 (10%)

Query: 19   TSATVQHFLQVSATHRSLKLT---------------KQSHSQILSLGHISNPFVSTKLIT 63
            T A +Q + ++ AT    K                 K++H++I + G   +  + TK   
Sbjct: 701  TGAVLQFWQRIKATESKYKTIGSAPGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAI 760

Query: 64   AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
             Y    +   + +VF  I +   +L+N +I G+  +     +LEL+S M    + PD F 
Sbjct: 761  MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFA 820

Query: 124  LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
                 K    + DL  G +IH   +  G   D+ +  +L+ MY KCG             
Sbjct: 821  FPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGD------------ 868

Query: 184  QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
                                  +  +R VFD+M  R++ +WT+MI+GY  NG   E L  
Sbjct: 869  ----------------------IEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGF 906

Query: 244  FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
            F ++     + PN+VS++SVL  C +L  L  G+  H + I+     D+ +  A++DMYS
Sbjct: 907  F-DLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYS 965

Query: 304  KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
            KCGSLD AR +F++++  KD + WS++++ YG+HG G +A+ L+++MV  G +P  +T  
Sbjct: 966  KCGSLDLARCLFDETA-GKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFT 1024

Query: 364  GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
             VLSAC  SGL+ EG   +  +   + I       AC+VD+LGRAGQL  A+D I+ MPV
Sbjct: 1025 CVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPV 1084

Query: 424  EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483
            EP  SIWG+L+ A  +H N ++ +     L  L+P +   +V LSN+YA+  RW+ V ++
Sbjct: 1085 EPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKV 1144

Query: 484  RTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            R MM  RG  K  G S +    + H F V D++HP    +Y  L++L      AA   HL
Sbjct: 1145 RKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEEL------AAPMKHL 1198

Query: 544  G 544
            G
Sbjct: 1199 G 1199



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/418 (29%), Positives = 213/418 (50%), Gaps = 51/418 (12%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q HSQ+   G + + F +TKL + YA C     ++ VF+   H +V+L+NS +  Y +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 101 GHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK---IGFVVDV 156
              E L LF  M   +  +PD+FT+    K    ++ L +G +IHG + K   IG   D+
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIG--SDM 139

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            + ++L+ +Y KCG+  E L +F+E                                   
Sbjct: 140 FVGSALVELYSKCGQMGEALKVFEE----------------------------------F 165

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           +R +   WT+M+ GY QN D +EAL LF +M + D +  + V+LVSV+  C+ L+ +  G
Sbjct: 166 QRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAG 225

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
             +HG  IR+E + D+ L N+L+++Y+K G    A  +F      KD I+WS++++ Y  
Sbjct: 226 SCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMIACYAN 284

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN-SVINTYRIKPTT 395
           +   +EA+ L+++M+    +P+ +T+V  L AC  S  + EG +I+  +V   + +  + 
Sbjct: 285 NEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFS- 343

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
            +   ++DM  +    D A+D  + +P +   S W AL+S    +G      +AYKS+
Sbjct: 344 -VSTALIDMYMKCSCPDEAVDLFQRLPKKDVVS-WVALLSGYAQNG------MAYKSM 393



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 141/341 (41%), Gaps = 45/341 (13%)

Query: 4   SSARNTFALVTSRNY--TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
           + A N F  +  + +   S TV   LQ  A  R+L+  K+ H   +  G   +  VST L
Sbjct: 289 NEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTAL 348

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           I  Y  C  P ++  +F  +  KDV  + +L++GY +N    +++ +F NM    + PD 
Sbjct: 349 IDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDA 408

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
             +  I   S E+      + +HG  ++ GF  +V +  SL+ +Y KCG   + + LF  
Sbjct: 409 VAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKG 468

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           M  R+V  W                                  ++MI  Y  +G   EAL
Sbjct: 469 MIVRDVVIW----------------------------------SSMIAAYGIHGRGGEAL 494

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG-----KQIHGFAIRKELNHDVSLCN 296
            +F +M     + PN V+ +S+L  CS    +  G     + +H + +R +  H      
Sbjct: 495 EIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEH----FG 550

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            ++D+  + G L  A  +            W +++    +H
Sbjct: 551 IMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIH 591



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 6/199 (3%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           LV +   C++   +S   Q+H    +  + HD      L  +Y+KC SL  AR+VF+++ 
Sbjct: 7   LVDLFQACNNGRSVS---QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETP 63

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEG 378
            + +   W+S +  Y    +  E + L++ M+C  G  PD  TI   L AC    ++  G
Sbjct: 64  -HPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
             I+        I     + + +V++  + GQ+  AL   +     P   +W ++V+   
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTGYQ 181

Query: 439 MHGNSEMQDLAYKSLIQLE 457
            + + E     +  ++ ++
Sbjct: 182 QNNDPEEALALFSQMVMMD 200


>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
          Length = 499

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 172/490 (35%), Positives = 280/490 (57%), Gaps = 7/490 (1%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ-SQLVFNSIQHKDVYLYNSLIN 94
           ++  K+ H+ +++ G         KLIT Y         ++L+F+++ H   YLYN++  
Sbjct: 1   MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSLHHARLLFDAVYHPSTYLYNTMFR 60

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            Y  +     AL L  +M+     PD +T   + K    +  L  G  +H  ++K G   
Sbjct: 61  VYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQELHCQALKFGLGG 120

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
            V + NSL+ +Y    +      +FD M  R++ SW   ++ +A+S     V  +R+VFD
Sbjct: 121 HVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCS---VEAARKVFD 177

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  R+V +++AM+  YV+     EAL LF E+    +IEP+   ++SVL  C++L  L 
Sbjct: 178 EMPERSVVSYSAMLAAYVRGNRFREALELFREL-FSVKIEPSDSCVMSVLCACANLGALD 236

Query: 275 GGKQIHGFAIRKELNH-DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
            G+ ++ F    + ++ D  +  ALIDM+ KCGS++ A  VFE +   K    W++++SG
Sbjct: 237 VGRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAK-EKHVGEWTAMLSG 295

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
             +HG G + +  + KMV  G KPD +T V +LS C  SGL+NEGL  ++ + + + ++P
Sbjct: 296 LAMHGLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEP 355

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
           T E   CVVD+LGRAG +D+A+  I  MP EP+ +IWGAL++A  ++ N E+ +LA + L
Sbjct: 356 TVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGALLNACRVYKNVEVGELAAQWL 415

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           I+ EP N + Y++L +LY  + RWD V +++  MK+ G +K PGCS I + G  + F V 
Sbjct: 416 IKDEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEVGGICYEFVVG 475

Query: 514 DKAHPCSVSI 523
           DK+HPC+V I
Sbjct: 476 DKSHPCAVEI 485


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/507 (31%), Positives = 276/507 (54%), Gaps = 38/507 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVS-TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           L+  ++S  Q L  G + +     T+ +   ++  + +  + +F  +  KD+  +N++I 
Sbjct: 154 LRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRK-IFEMMPEKDLVSWNTIIA 212

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G  +N  + E L +   M  +N+ PD FTL+++  L  E  D++ G  IHG SI+ G   
Sbjct: 213 GNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDA 272

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+ +A+SL+ MY KC +                                  V  S RVF 
Sbjct: 273 DIYVASSLIDMYAKCTR----------------------------------VADSCRVFT 298

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            +  R+  +W ++I G VQNG  DE L  F +M L  +I+P   S  S++P C+ L  L 
Sbjct: 299 LLTERDGISWNSIIAGCVQNGLFDEGLRFFRQM-LMAKIKPKSYSFSSIMPACAHLTTLH 357

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GKQ+HG+  R   + ++ + ++L+DMY+KCG++  A+++F+     +D ++W++++ G 
Sbjct: 358 LGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL-RDMVSWTAMIMGC 416

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            LHG+  +A+ L+ +M   G KP+ +  + VL+AC   GL++E  + +NS+   + I P 
Sbjct: 417 ALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPG 476

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E  A V D+LGRAG+L+ A DFI  M + P+ SIW  L+SA  +H N +M +     ++
Sbjct: 477 VEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRIL 536

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +++P N   Y+ L+N+Y+++RRW   A+ R  M+  G++K+P CSWI +  K + F   D
Sbjct: 537 EVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGD 596

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASP 541
           ++HPC   I E ++ L+ +M      P
Sbjct: 597 ESHPCYEKIREAMEVLVELMEKEGYVP 623



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 232/494 (46%), Gaps = 31/494 (6%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ 75
           R  T A V+  L+   + +S    +Q H+Q+L     S+    + L++ Y+       S 
Sbjct: 2   RTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINLLHDSL 60

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
            +FN+I       + S+I  Y  +   +++L  F  M  S + PD     ++ K    + 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE-------CLNLFDEMPQRNVG 188
           DLN+G  +HG  I++G   D+   N+LM+MY K     E          +FDEM +R   
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
              V +    S          R++F+ M  +++ +W  +I G  +NG  +E L +  EM 
Sbjct: 181 VRTVSVLSEDS---------VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMG 231

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
             + ++P+  +L SVLP  +  + +S GK+IHG +IR+ L+ D+ + ++LIDMY+KC  +
Sbjct: 232 GAN-LKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRV 290

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
             + RVF   +  +D I+W+SI++G   +G   E +  + +M+    KP   +   ++ A
Sbjct: 291 ADSCRVFTLLT-ERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPA 349

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
           C     ++ G +++  +           I + +VDM  + G +  A      M +    S
Sbjct: 350 CAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS 408

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYVSLSNLYASSRRW---DAVAEL 483
            W A++    +HG +     A +   Q+E E   P++   ++ L A S      +A    
Sbjct: 409 -WTAMIMGCALHGQAPD---AIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYF 464

Query: 484 RTMMKDRGLKKSPG 497
            +M +D G+  +PG
Sbjct: 465 NSMTRDFGI--APG 476



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 121/260 (46%), Gaps = 11/260 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L + A +  +   K+ H   +  G  ++ +V++ LI  YA C +   S  VF 
Sbjct: 239 SFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFT 298

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  +D   +NS+I G V+N   +E L  F  M  + + P  ++ ++I      +  L++
Sbjct: 299 LLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHL 358

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG   + GF  ++ +A+SL+ MY KCG       +FD M  R++ SW   I G A 
Sbjct: 359 GKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCAL 418

Query: 200 SGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
            G     +    +F+QM+    + N  A+ A++      G +DEA   F  M     I P
Sbjct: 419 HGQAPDAI---ELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAP 475

Query: 256 NKVSLVSVLPTCSSLIGLSG 275
                 +V    S L+G +G
Sbjct: 476 GVEHYAAV----SDLLGRAG 491


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 282/478 (58%), Gaps = 19/478 (3%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +I AY    Q  ++  +F    +KD   + ++INGYV+    +EA E+++ M Y +V+  
Sbjct: 272 MIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVA-- 329

Query: 121 DFTLATISKLSGEIKDLNV---GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
               A  + +SG I++  +     +   L+ +     D I  NS+++ Y + G+ SE LN
Sbjct: 330 ----AKTALMSGLIQNGRIDEASQVFSQLNKR-----DAICWNSMIAGYCQSGRMSEALN 380

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           LF +MP +N  SWN  ISG+A +G+     R+  +F+ M  RNV +W ++I G++QNG  
Sbjct: 381 LFRQMPVKNAVSWNTMISGYAQAGEMD---RATEIFEAMGVRNVISWNSLITGFLQNGLY 437

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
            +AL   + M  + + +P++ +    L +C++L  L  GKQ+H   ++    +D+ + NA
Sbjct: 438 LDALKSLVLMGQEGK-KPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNA 496

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           LI MY+KCG +  A +VF+D     D I+W+S++SGY L+G  +EA   + +M   G+ P
Sbjct: 497 LIAMYAKCGGVQSAEKVFKDIE-GVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVP 555

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           D +T +G+LSAC  +GL N+G++++  +I  + I+P  E  +C+VD+LGR G+L+ A + 
Sbjct: 556 DEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNI 615

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
           ++ M V+ +  +WG+L++A  +H N E+  +A   L++LEP N SNY++LSN++A + RW
Sbjct: 616 VRGMKVKANAGLWGSLLAACRVHKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGRW 675

Query: 478 DAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           + V  LR +M++R   K PGCSWI +  +   F   D     + SI  +L+ L   MR
Sbjct: 676 EDVERLRVLMRERRAGKLPGCSWIEVQNQIQNFVSDDPGKLRTESIKIILNTLSAHMR 733



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 200/425 (47%), Gaps = 61/425 (14%)

Query: 48  SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
           +L    N F   K I      G+  +++ VF+++ HK+   YNS++  + KN   ++A +
Sbjct: 10  TLEQSKNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQ 69

Query: 108 LFSNMYYSNVSPDDFTLA------------TISKLSGEIKDLNVGMLIHGLSIK------ 149
           LF  M   N+   +  +A             +  L  E  + +  ++I   + K      
Sbjct: 70  LFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKA 129

Query: 150 ------IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
                 +   +D    N++++ Y K G+F +   +F++MP +++ S+N  ++G+  +G  
Sbjct: 130 RELFELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKM 189

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
            L +   + F++M  RNV +W  M+ G+V N DL  A  LF ++      +PN VS V++
Sbjct: 190 GLAM---KFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIP-----DPNAVSWVTM 241

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC------NALIDMYSKCGSLDCARRVFED 317
           L  C        G   HG  +      D   C      NA+I  Y +   +D A ++F++
Sbjct: 242 L--C--------GFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKE 291

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
           + + KD ++W+++++GY   GK  EA  +YN+M       D+     ++S   ++G I+E
Sbjct: 292 TPY-KDCVSWTTMINGYVRVGKLDEAREVYNQM----PYKDVAAKTALMSGLIQNGRIDE 346

Query: 378 GLEIYNSVINTYRIKPTTEIC-ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
             ++++      ++     IC   ++    ++G++  AL+  + MPV+ + S W  ++S 
Sbjct: 347 ASQVFS------QLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVS-WNTMISG 399

Query: 437 SVMHG 441
               G
Sbjct: 400 YAQAG 404



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 177/382 (46%), Gaps = 76/382 (19%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++T +A  G+ + ++ +F+ +  +++  +N++I GY+ N+   EA +LF  M       D
Sbjct: 54  MVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLM----AERD 109

Query: 121 DFTLATI-----------------SKLSGEIKDLNVGMLIHGLSIKIGF----------- 152
           +F+ A +                   +  ++       +I G + K  F           
Sbjct: 110 NFSWALMITCYTRKGMLEKARELFELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMP 169

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS-------- 204
           V D++  NS+++ Y + GK    +  F+ M +RNV SWN+ ++G  ++ D          
Sbjct: 170 VKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEK 229

Query: 205 --------------------LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
                                +V +R++FD+M  +NV +W AMI  YVQ+  +DEA+ LF
Sbjct: 230 IPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLF 289

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
            E   KD      VS  +++     +  L   ++++     K++    +L + LI    +
Sbjct: 290 KETPYKD-----CVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLI----Q 340

Query: 305 CGSLDCARRVFEDSSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
            G +D A +VF  S  NK DAI W+S+++GY   G+  EA+ L+ +M       + ++  
Sbjct: 341 NGRIDEASQVF--SQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPV----KNAVSWN 394

Query: 364 GVLSACGRSGLINEGLEIYNSV 385
            ++S   ++G ++   EI+ ++
Sbjct: 395 TMISGYAQAGEMDRATEIFEAM 416



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 46/292 (15%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           + N      +I+ YA  G+  ++  +F ++  ++V  +NSLI G+++N  + +AL+    
Sbjct: 387 VKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVL 446

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M      PD  T A        +  L VG  +H L +K G++ D+ ++N+L++MY KCG 
Sbjct: 447 MGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGG 506

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                 +F ++   ++ SWN  ISG+A                             +NGY
Sbjct: 507 VQSAEKVFKDIEGVDLISWNSLISGYA-----------------------------LNGY 537

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK------QIHGFAIR 285
                 +EA   F +M  +  + P++V+ + +L  CS   GL+          I GFAI 
Sbjct: 538 A-----NEAFWAFEQMSSEGTV-PDEVTFIGMLSACSH-AGLTNQGVDLFKCMIEGFAIE 590

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
               H     + L+D+  + G L+ A  +        +A  W S+++   +H
Sbjct: 591 PLAEH----YSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVH 638



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L++ KQ H  IL  G+I++ FVS  LI  YA CG    ++ VF  I+  D+  +NSLI+
Sbjct: 471 ALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLIS 530

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GY  N   NEA   F  M      PD+ T   +          N G+ +    I+ GF +
Sbjct: 531 GYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIE-GFAI 589

Query: 155 DVILAN--SLMSMYVKCGKFSECLNLFDEMP-QRNVGSW 190
           + +  +   L+ +  + G+  E  N+   M  + N G W
Sbjct: 590 EPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLW 628


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 163/482 (33%), Positives = 267/482 (55%), Gaps = 37/482 (7%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSP 119
           LI+ YA  G   +++ +F+ +  +D + + ++I+GYV++   NEALELF  M  S N   
Sbjct: 142 LISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKS 201

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           + FT+++    +  +  L +G  IHG  ++ G   D ++ ++L  MY KCG   E     
Sbjct: 202 NKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEE----- 256

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
                                        +R +FD+M  R++  WTAMI+ Y Q+G   E
Sbjct: 257 -----------------------------ARHIFDKMVDRDIVTWTAMIDRYFQDGRRKE 287

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
              LF ++ L+  I PN+ +   VL  C++      GK++HG+  R   +      +AL+
Sbjct: 288 GFDLFADL-LRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALV 346

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
            MYSKCG++  A RVF+++    D  +W+S+++GY  +G+  EA+  +  +V  G++PD 
Sbjct: 347 HMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDH 405

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           IT VGVLSAC  +GL+++GL+ ++S+   Y +  T +  AC++D+L R+GQ D A + I 
Sbjct: 406 ITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIIS 465

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            M ++P   +W +L+    +HGN ++   A ++L ++EPENP+ YV+L+N+YA++  W  
Sbjct: 466 KMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSE 525

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
           VA++R  M DRG+ K PG SWI+I    H F V D +HP S  I E L  L   M+    
Sbjct: 526 VAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGF 585

Query: 540 SP 541
            P
Sbjct: 586 VP 587



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 167/308 (54%), Gaps = 6/308 (1%)

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L  G  +H      GFV  + + N L+ MY KC    +   LFDEMP+R++ SWN+ ISG
Sbjct: 86  LQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISG 145

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +A  G   L+  ++ +FD+M  R+ ++WTAMI+GYV++   +EAL LF  M+  D  + N
Sbjct: 146 YAKMG---LLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSN 202

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           K ++ S L   +++  L  GK+IHG+ +R  L+ D  + +AL DMY KCGS++ AR +F 
Sbjct: 203 KFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIF- 261

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D   ++D +TW++++  Y   G+  E   L+  ++  G +P+  T  GVL+AC       
Sbjct: 262 DKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEE 321

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G +++  +       P +   + +V M  + G +  A    K  P +P    W +L++ 
Sbjct: 322 LGKKVHGYMTRV-GFDPFSFAASALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAG 379

Query: 437 SVMHGNSE 444
              +G  +
Sbjct: 380 YAQNGQPD 387



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 133/305 (43%), Gaps = 38/305 (12%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L++ K+ H  I+  G  S+  V + L   Y  CG   +++ +F+ +  +D+  + ++I+ 
Sbjct: 219 LRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDR 278

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y ++    E  +LF+++  S + P++FT + +           +G  +HG   ++GF   
Sbjct: 279 YFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPF 338

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
              A++L+ MY KCG       +F E PQ ++ SW   I+G                   
Sbjct: 339 SFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAG------------------- 379

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL-- 273
                          Y QNG  DEA+  F E+ +K   +P+ ++ V VL  C+   GL  
Sbjct: 380 ---------------YAQNGQPDEAIRYF-ELLVKSGTQPDHITFVGVLSACAH-AGLVD 422

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
            G    H    +  L H       +ID+ ++ G  D A  +    S   D   W+S++ G
Sbjct: 423 KGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGG 482

Query: 334 YGLHG 338
             +HG
Sbjct: 483 CRIHG 487



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 2/216 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L   A   S +L K+ H  +  +G     F ++ L+  Y+ CG    ++ VF   
Sbjct: 306 TFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKET 365

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
              D++ + SLI GY +N   +EA+  F  +  S   PD  T   +         ++ G+
Sbjct: 366 PQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGL 425

Query: 142 -LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHAS 199
              H +  + G          ++ +  + G+F E  N+  +M  + +   W   + G   
Sbjct: 426 DYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRI 485

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
            G+  L  R+     +++  N   +  + N Y   G
Sbjct: 486 HGNLKLAQRAAEALFEIEPENPATYVTLANIYATAG 521


>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
 gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 183/535 (34%), Positives = 296/535 (55%), Gaps = 12/535 (2%)

Query: 4   SSARNTFALVTS--RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTK 60
           SS    F L +S  R+  S   Q FL +      L   KQ H  I+  G +S   ++   
Sbjct: 112 SSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVKQIHCHIIVSGCLSLGNYLWNS 171

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L+  Y   G    ++ VF  + H DV  +N +I GY K     EAL+L+  M    + PD
Sbjct: 172 LVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPD 231

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV--DVILANSLMSMYVKCGKFSECLNL 178
           ++T+ ++    G + D+ +G  +HG   + G V   ++IL+N+L+ MY KC +       
Sbjct: 232 EYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRA 291

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG-DL 237
           FD M ++++ SWN  + G    GD      ++ VFDQM +R++ +W +++ GY + G D 
Sbjct: 292 FDAMKKKDMRSWNTMVVGFVRLGDME---AAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQ 348

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
                LF EM + ++++P++V++VS++   ++   LS G+ +HG  IR +L  D  L +A
Sbjct: 349 RTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSA 408

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           LIDMY KCG ++ A  VF+ ++  KD   W+S+++G   HG G +A+ L+ +M   G  P
Sbjct: 409 LIDMYCKCGIIERAFMVFKTAT-EKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTP 467

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           + +T++ VL+AC  SGL+ EGL ++N + + +   P TE    +VD+L RAG+++ A D 
Sbjct: 468 NNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDI 527

Query: 418 I-KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
           + K MP+ PS S+WG+++SA     + E  +LA   L++LEPE    YV LSN+YA+  R
Sbjct: 528 VQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGR 587

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA-HPCSVSIYEMLDDL 530
           W    + R  M++RG+KK+ G S +      H F  A+K  HP    I  +L  L
Sbjct: 588 WGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPRWTEIKRILQHL 642


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 172/505 (34%), Positives = 282/505 (55%), Gaps = 10/505 (1%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           FL +    + L    Q H   +  G     ++   L+  Y    +   +  VF  +   D
Sbjct: 133 FLFLLQASKFLSQVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPD 192

Query: 86  VYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
              +N +I GY K  GHN EAL+    M    + PD+FT+  +    G + D  +G  +H
Sbjct: 193 AVSFNIMIFGYAKK-GHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVH 251

Query: 145 GLSIKIGFV--VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
               + G +   ++IL N+L+ MYVKC +     ++F+ + +++  SWN  I+G+A  G+
Sbjct: 252 AWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGN 311

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
             +   +   F+ M  R++ +W ++I GY Q GD      LF E  + + I P+ V++++
Sbjct: 312 LEI---AHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLF-ENMVAENIWPDFVTIIN 367

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           ++   + +  L  G+ IHG+ +R ++  D  L +A IDMY KCGS+  A  VF + +  K
Sbjct: 368 LVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVT-EK 426

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D   W+++++G+  HG G +A+ L+ +M      P+ +T V VL+AC  SG +++GL I+
Sbjct: 427 DVTVWTTMITGFAFHGYGSKALQLFYEMQEY-VMPNQVTFVAVLTACSHSGFVSQGLRIF 485

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           NS+   Y I+P  E   C+VD+LGR+G+     D I+ MP++PS SIWGA++SA   +GN
Sbjct: 486 NSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGN 545

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
            E+ ++A K L++LEPE    YV LSN+YA+S RW    ++R +M+ RG+KK+ GCS + 
Sbjct: 546 IEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVV 605

Query: 503 IHGKTHCFSVADKAHPCSVSIYEML 527
           + G  H F  ADK HP  + I  +L
Sbjct: 606 VDGIIHEFVAADKRHPRWIEIQSIL 630



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 84/186 (45%), Gaps = 3/186 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + +  +A   +L   +  H  ++ +    + F+ +  I  Y  CG   ++ +VF  +
Sbjct: 364 TIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREV 423

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KDV ++ ++I G+  +   ++AL+LF  M    V P+  T   +         ++ G+
Sbjct: 424 TEKDVTVWTTMITGFAFHGYGSKALQLFYEM-QEYVMPNQVTFVAVLTACSHSGFVSQGL 482

Query: 142 LI-HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISGHAS 199
            I + +  + G    V     L+ +  + G+FSE  ++ + MP +   S W   +S   +
Sbjct: 483 RIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRA 542

Query: 200 SGDFSL 205
            G+  +
Sbjct: 543 YGNIEI 548


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 161/495 (32%), Positives = 271/495 (54%), Gaps = 39/495 (7%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+  +  G   + ++   L++ Y    Q T +Q VF  ++  DV  +N++I+ + ++   
Sbjct: 387 HAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFR 446

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            +A ELF  M  S +  + +T+ ++     +  DL  G  IHG +IK G  ++  L  SL
Sbjct: 447 AKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSL 506

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
             MY+ CG      N+F   PQR++ S                                 
Sbjct: 507 TEMYINCGDERAATNMFTRCPQRDLVS--------------------------------- 533

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W ++I+ Y++N +  +AL+LF  M     +EPN V+++++L +C+ L  L  G+ +H +
Sbjct: 534 -WNSLISSYIKNDNAGKALLLFNHM--ISELEPNSVTIINILTSCTQLAHLPLGQCLHAY 590

Query: 283 AIRKE--LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
             R+E  L  D SL NA I MY++CG L  A ++F      +  ++W+++++GYG+HG+G
Sbjct: 591 TTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQ-TRSIVSWNAMITGYGMHGRG 649

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            +A L + +M+  G KP+ ++   VLSAC  SGL   GL++++S++  + I P      C
Sbjct: 650 RDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGC 709

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+LGR G    A+ FI +MP+EP  SIW AL+S+  +  N+++ +  +  L++LEP N
Sbjct: 710 MVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSN 769

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
           P N++ LSN+YA++  W  V ++R  +++RGL K PG SWI I  + H F+  D  HP S
Sbjct: 770 PGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQS 829

Query: 521 VSIYEMLDDLILIMR 535
             IYE L+ L  ++R
Sbjct: 830 ERIYENLNSLTSLIR 844



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 188/381 (49%), Gaps = 42/381 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           SAT+   L+      ++    + HS I  L  I++  V T L+  Y  CG   ++  VF 
Sbjct: 60  SATMPLVLKACGRLNAIGNGVRIHSCIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFV 119

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  +D+  +N+LI+GYV    + EA+ LF  M  + ++P+  T+  +    GE+ +L +
Sbjct: 120 EMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRL 179

Query: 140 GMLIHGLSIKIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           G  IHG  ++ G F +D  +  +L+  Y++          FD                  
Sbjct: 180 GQEIHGYCLRNGLFDMDAYVGTALVGFYMR----------FD------------------ 211

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                   V S RVF  M  RN+ +W A+I G++  GD  +AL L+  M L + I+ + V
Sbjct: 212 -------AVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSM-LIEGIKFDAV 263

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +++ V+  C+    L  G Q+H  AI+  L +D+ + NAL++MYS  GSL+ +  +F ++
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALF-NA 322

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
               DA  W+S++S Y   G   EA+ L+ KM     K D+ TI  +LS C     +N+G
Sbjct: 323 VPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCND---LNDG 379

Query: 379 LEIYNSVINTYRIKPTTEICA 399
             I+   ++ + +K   E+ A
Sbjct: 380 -SIWGRGLHAHAMKSGIELDA 399



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 183/381 (48%), Gaps = 46/381 (12%)

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           ++ + L   P Q+ LV  S   KD   +NS+I  + K    +  L  ++ M    ++PD 
Sbjct: 7   LSFHGLSSTPEQTHLVNVS---KD---WNSIIKHHTKLKNDHAILSTYTQMESLGITPDS 60

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T+  + K  G +  +  G+ IH     +  + DV +  +L+  Y KCG           
Sbjct: 61  ATMPLVLKACGRLNAIGNGVRIHSCIRGLDLINDVRVGTALVDFYCKCG----------- 109

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
                                  LV  + +VF +M  R++ +W A+I+GYV      EA+
Sbjct: 110 -----------------------LVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAV 146

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-NHDVSLCNALID 300
           +LF+EM+ K  + PN  ++V++L  C  ++ L  G++IHG+ +R  L + D  +  AL+ 
Sbjct: 147 LLFVEMK-KAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVG 205

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
            Y +  ++  + RVF      ++ ++W++I++G+   G   +A+ LY+ M+  G K D +
Sbjct: 206 FYMRFDAV-LSHRVFS-LMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAV 263

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T++ V+ AC   G +  G++++   I  + +     I   +++M    G L+ +      
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIK-FNLINDLFILNALLNMYSDNGSLESSWALFNA 322

Query: 421 MPVEPSPSIWGALVSASVMHG 441
           +P   + ++W +++S+ +  G
Sbjct: 323 VPTSDA-ALWNSMISSYIGFG 342



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 201/457 (43%), Gaps = 46/457 (10%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVF 78
           S TV   L        L+L ++ H   L  G    + +V T L+  Y +      S  VF
Sbjct: 161 SRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY-MRFDAVLSHRVF 219

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  +++  +N++I G++      +AL+L+S+M    +  D  T+  + +   E   L 
Sbjct: 220 SLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLR 279

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +GM +H L+IK   + D+ + N+L++MY   G       LF+ +P  +   WN       
Sbjct: 280 LGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWN------- 332

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                      +MI+ Y+  G   EA+ LF++M+L +RI+ +  
Sbjct: 333 ---------------------------SMISSYIGFGFHAEAIALFIKMRL-ERIKEDVR 364

Query: 259 SLVSVLPTCSSL-IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           ++  +L  C+ L  G   G+ +H  A++  +  D  L NAL+ MY K   +  A+ VFE 
Sbjct: 365 TIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEK 424

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
                D I+W++++S +       +A  L+  M     K +  TIV +L+ C     +  
Sbjct: 425 MR-GLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVF 483

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G  I+   I    ++  T +   + +M    G    A +     P     S W +L+S+ 
Sbjct: 484 GRSIHGFAIKN-GLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVS-WNSLISSY 541

Query: 438 VMHGNSEMQDLAYKSLI-QLEPENPSNYVSLSNLYAS 473
           + + N+    L +  +I +LEP    N V++ N+  S
Sbjct: 542 IKNDNAGKALLLFNHMISELEP----NSVTIINILTS 574



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 149/362 (41%), Gaps = 49/362 (13%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           + S T+   L        L   +  H   +  G   N  ++T L   Y  CG    +  +
Sbjct: 463 FNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNM 522

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F     +D+  +NSLI+ Y+KN    +AL LF++M  S + P+  T+  I     ++  L
Sbjct: 523 FTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM-ISELEPNSVTIINILTSCTQLAHL 581

Query: 138 NVGMLIHGLSIK--IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
            +G  +H  + +  +   +D  LAN+ ++MY +CGK      +F  +  R++ SWN    
Sbjct: 582 PLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWN---- 637

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                                         AMI GY  +G   +A + F +M L D  +P
Sbjct: 638 ------------------------------AMITGYGMHGRGRDATLAFAQM-LDDGFKP 666

Query: 256 NKVSLVSVLPTCS-SLIGLSGGKQIHG----FAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           N VS  SVL  CS S + ++G +  H     F I  +L H       ++D+  + G    
Sbjct: 667 NNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTH----YGCMVDLLGRGGHFSE 722

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKP-DIITIVGVLSA 368
           A           DA  W +++S   +         ++ K+V L  S P + I +  + +A
Sbjct: 723 AIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAA 782

Query: 369 CG 370
            G
Sbjct: 783 AG 784


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 173/488 (35%), Positives = 274/488 (56%), Gaps = 42/488 (8%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T LIT Y   G    ++ +F+ I  KDV  +N++I GYV++    EAL  F+ M  ++VS
Sbjct: 197 TALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVS 256

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           P+  T+ ++    G ++ L +G  I       GF  ++ L N+L+ MY KCG+       
Sbjct: 257 PNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGE------- 309

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
                   +G+                   +R++FD M+ ++V  W  MI GY      +
Sbjct: 310 --------IGT-------------------ARKLFDGMEDKDVILWNTMIGGYCHLSLYE 342

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-----HDVS 293
           EALVLF E+ L++ + PN V+ ++VLP C+SL  L  GK +H + I K L      ++VS
Sbjct: 343 EALVLF-EVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAY-IDKNLKGTGNVNNVS 400

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L  ++I MY+KCG ++ A +VF  S  ++   +W++++SG  ++G    A+ L+ +M+  
Sbjct: 401 LWTSIIVMYAKCGCVEVAEQVFR-SMGSRSLASWNAMISGLAMNGHAERALGLFEEMINE 459

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G +PD IT VGVLSAC ++G +  G   ++S+   Y I P  +   C++D+L R+G+ D 
Sbjct: 460 GFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDE 519

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A   +  M +EP  +IWG+L++A  +HG  E  +   + L +LEPEN   YV LSN+YA 
Sbjct: 520 AKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAG 579

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
           + RWD VA++RT + D+G+KK PGC+ I I G  H F V DK HP S +I+ MLD++  +
Sbjct: 580 AGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRL 639

Query: 534 MRGAAASP 541
           +      P
Sbjct: 640 LEETGFVP 647



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 229/459 (49%), Gaps = 26/459 (5%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV--FNSIQHK--DVYLYNSLING 95
           KQ HS I+  G  +  F  +KLI   AL      S  +  F+SI H+  +++++N+LI  
Sbjct: 42  KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           +        +L LFS M +S + P+  T  ++ K   + K  +    +H  ++K+   + 
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLH 161

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             +  SL+ MY + G+      +FD+   R+  S+   I+G+ S G    V  +RR+FD+
Sbjct: 162 PHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGH---VDDARRLFDE 218

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           +  ++V +W AMI GYVQ+G  +EAL  F  MQ  D + PN+ ++VSVL  C  L  L  
Sbjct: 219 IPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEAD-VSPNQSTMVSVLSACGHLRSLEL 277

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK I  +   +    ++ L NAL+DMYSKCG +  AR++F D   +KD I W++++ GY 
Sbjct: 278 GKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLF-DGMEDKDVILWNTMIGGYC 336

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
                 EA++L+  M+     P+ +T + VL AC   G ++ G  ++  +    +     
Sbjct: 337 HLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNV 396

Query: 396 E---ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
               +   ++ M  + G ++ A    ++M    S + W A++S   M+G++E     ++ 
Sbjct: 397 NNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSR-SLASWNAMISGLAMNGHAERALGLFEE 455

Query: 453 LIQ--LEPEN-----------PSNYVSLSNLYASSRRWD 478
           +I    +P++            + +V L + Y SS   D
Sbjct: 456 MINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKD 494



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 136/315 (43%), Gaps = 48/315 (15%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           RSL+L K   S +   G   N  +   L+  Y+ CG+   ++ +F+ ++ KDV L+N++I
Sbjct: 273 RSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMI 332

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK---- 149
            GY     + EAL LF  M   NV+P+D T   +      +  L++G  +H    K    
Sbjct: 333 GGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKG 392

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            G V +V L  S++ MY KCG       +F  M  R++ SWN  ISG A           
Sbjct: 393 TGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLA----------- 441

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
                                   NG  + AL LF EM + +  +P+ ++ V VL  C+ 
Sbjct: 442 -----------------------MNGHAERALGLFEEM-INEGFQPDDITFVGVLSACTQ 477

Query: 270 LIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
              +  G +        + I  +L H       +ID+ ++ G  D A+ +  +     D 
Sbjct: 478 AGFVELGHRYFSSMNKDYGISPKLQH----YGCMIDLLARSGKFDEAKVLMGNMEMEPDG 533

Query: 325 ITWSSIVSGYGLHGK 339
             W S+++   +HG+
Sbjct: 534 AIWGSLLNACRIHGQ 548


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 174/488 (35%), Positives = 265/488 (54%), Gaps = 6/488 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H   L LG +   FV+  L+ +YA  G    S+  F+ +  ++V  +NS+I GY +    
Sbjct: 68  HGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDT 127

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EA  LF  M       D+FTLA++     +  +L  G L+H L +  G  VD+IL  +L
Sbjct: 128 REACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGAL 187

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + MY KCG        F+ MP ++V SW   +      G    V  +R  FD M  RN  
Sbjct: 188 VDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGS---VDAARCWFDHMPERNTV 244

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +W  MI+ YVQ G   EAL L+ +MQ      P++ +LV VL  C  +  L+ GK +H +
Sbjct: 245 SWNTMISCYVQRGQYHEALDLYKQMQ-SHGPAPDEATLVPVLSACGRIGDLTVGKMVHLY 303

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
                 N D+SL N+L+DMY+KCG +D A R+F +   N++ ++W+ I+ G  +HG+  +
Sbjct: 304 IRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMC-NRNVVSWNVIIGGLAMHGRALD 362

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+  +  MV   + PD IT V +LS+C   GL+  G   + S+ + Y +K   E  AC+V
Sbjct: 363 AITFFRSMV-RNTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMV 421

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGR G L++A+  IK MP++P   +WGAL+ A  +HGN ++     K L++LE  +  
Sbjct: 422 DLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGISGG 481

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            +V +SNL   + +W+ +  LR +MK+RG +K  G S I I+   H F V D  H  S  
Sbjct: 482 LFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNSIHEFGVEDIRHESSSE 541

Query: 523 IYEMLDDL 530
           IY ++D L
Sbjct: 542 IYAVVDQL 549



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 185/421 (43%), Gaps = 67/421 (15%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F+ I   D  +YN++   Y  +    EAL L   M    V P++FTL  + K     + 
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
            +  + +HG+++K+GFV  V +AN+L+  Y   G   +    FDEM  RNV SWN  I G
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +A                                  Q GD  EA  LF EM+ +     +
Sbjct: 121 YA----------------------------------QAGDTREACALFGEMR-RQGFLGD 145

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + +L S+L  CS    L  G+ +H   +      D+ L  AL+DMYSKCG L  ARR FE
Sbjct: 146 EFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFE 205

Query: 317 ------------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
                                         D    ++ ++W++++S Y   G+ HEA+ L
Sbjct: 206 MMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDL 265

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           Y +M   G  PD  T+V VLSACGR G +  G  ++  + +     P   +   ++DM  
Sbjct: 266 YKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIH-NPDISLINSLLDMYA 324

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466
           + GQ+D A+   + M      S W  ++    MHG +      ++S+++    +   +V+
Sbjct: 325 KCGQVDTAIRLFREMCNRNVVS-WNVIIGGLAMHGRALDAITFFRSMVRNTSPDGITFVA 383

Query: 467 L 467
           L
Sbjct: 384 L 384


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 163/503 (32%), Positives = 273/503 (54%), Gaps = 36/503 (7%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H   +  G   N  V+  ++  YA CG   ++ L+F+ ++ KD   +N++I  + +N 
Sbjct: 393 QLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNE 452

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
              E L LF +M  S + PDD+T  ++ K     K LN GM +HG  IK G  +D  + +
Sbjct: 453 HVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGS 512

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
           +++ MY KCG                                  ++V + ++ ++++ R 
Sbjct: 513 AIIDMYCKCG----------------------------------MLVEAEKIHERLEERT 538

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
             +W ++I+G+      + AL  F  M L+  + P+  +  +VL  C++L  +  GKQIH
Sbjct: 539 TVSWNSIISGFSSEKQGENALSYFSRM-LQVGVIPDNFTYATVLDICANLATVELGKQIH 597

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
           G  ++ +L+ DV + + ++DMYSKCG++  +R +FE +   +D +TWS+++  Y  HG G
Sbjct: 598 GQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAYHGLG 656

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            +A+ L+ +M     KP+    + VL AC   G +++GL  +  + + Y + P  E  +C
Sbjct: 657 EDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSC 716

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+LGR+GQ++ AL+ I++MP E    IW  L+    + GN E+ + A  SL+QL+P++
Sbjct: 717 MVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQD 776

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
            S YV LSN+YA +  W  VA++R+ MK+  LKK PGCSWI +  + H F V DKAHP S
Sbjct: 777 SSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRS 836

Query: 521 VSIYEMLDDLILIMRGAAASPHL 543
             IY+    L+  M+     P +
Sbjct: 837 EEIYQQTHLLVDEMKWDGYVPEI 859



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/513 (23%), Positives = 223/513 (43%), Gaps = 102/513 (19%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC------------- 68
           T  H  Q  +  +++   KQ+H+QI   G +   FVS  L+  Y  C             
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 69  ------------------GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
                             G    +Q +F+S+  +DV  +NS+++ Y++N  H +++E+F+
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M    +  D  T A + K    I+D  +G+ +H L+I++GF  DV+   +L+ MY  C 
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 171 K-------------------------------FSECLNLFDEMPQRNVG----------- 188
           K                               F+E L L+  M    +G           
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFR 279

Query: 189 --------SWNVRISGHASSGDFSL-----------------VVRSRRVFDQMKRRNVYA 223
                       ++  +A   +F                   +V +R+VF+        +
Sbjct: 280 SCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQS 339

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
             A+I GY +   + EAL +F  +Q K  ++ +++SL   L  CS++ G   G Q+HG A
Sbjct: 340 HNALIVGYARQDQVLEALEIFRSLQ-KSYLDFDEISLSGALTACSAIKGYLEGIQLHGLA 398

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           ++  L+ ++ + N ++DMY+KCG+L  A  +F+D    KDA++W++I++ +  +    E 
Sbjct: 399 VKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEI-KDAVSWNAIIAAHEQNEHVEET 457

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + L+  M+    +PD  T   V+ AC     +N G+E++  VI +  +     + + ++D
Sbjct: 458 LALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKS-GMGLDWFVGSAIID 516

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           M  + G L  A + I     E +   W +++S 
Sbjct: 517 MYCKCGMLVEA-EKIHERLEERTTVSWNSIISG 548



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 150/307 (48%), Gaps = 9/307 (2%)

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T + I +    +K +N G   H      GFV  V ++N L+  Y KC   +   N+FD+
Sbjct: 39  LTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           MPQR+V SWN  I G+A  G+      ++ +FD M  R+V +W +M++ Y+QNG   +++
Sbjct: 99  MPQRDVISWNTMIFGYAGVGNMEF---AQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSI 155

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            +F +M+L + I+ +  +   VL  C+ +     G Q+H  AI+   + DV    AL+DM
Sbjct: 156 EIFTKMRLLE-IQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDM 214

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           YS C  LD A  +F +    ++++ WS++++GY  + +  E + LY  M+  G      T
Sbjct: 215 YSTCKKLDHAFNIFCEMP-ERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQAT 273

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
                 +C        G +++   + T        +    +DM  +    DR +D  K  
Sbjct: 274 FASAFRSCAGLSAFELGTQLHAYALKT-NFGYDNIVGTATLDMYAKC---DRMVDARKVF 329

Query: 422 PVEPSPS 428
              P+P+
Sbjct: 330 NTFPNPT 336



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 149/325 (45%), Gaps = 43/325 (13%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           +YT  +V   ++  A  ++L    + H +++  G   + FV + +I  Y  CG   +++ 
Sbjct: 473 DYTFGSV---VKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEK 529

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +   ++ +    +NS+I+G+        AL  FS M    V PD+FT AT+  +   +  
Sbjct: 530 IHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLAT 589

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           + +G  IHG  +K+    DV +A++++ MY KCG   +   +F++ P+R+  +W+  I  
Sbjct: 590 VELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICA 649

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +A                                   +G  ++A+ LF EMQL++ ++PN
Sbjct: 650 YA----------------------------------YHGLGEDAIKLFEEMQLQN-VKPN 674

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE---LNHDVSLCNALIDMYSKCGSLDCARR 313
               +SVL  C+ +  +  G  +H F   +    L+  +   + ++D+  + G ++ A  
Sbjct: 675 HTIFISVLRACAHMGFVDKG--LHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALE 732

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHG 338
           + E   F  D + W +++    L G
Sbjct: 733 LIESMPFEADDVIWRTLLGICRLQG 757



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 32/212 (15%)

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           K++   +   CS+L  ++ GKQ H           V + N L+  Y KC +L+ A  VF+
Sbjct: 38  KLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFD 97

Query: 317 ------------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
                                         DS   +D ++W+S++S Y  +G   +++ +
Sbjct: 98  KMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEI 157

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           + KM  L  + D  T   VL AC        GL+++   I              +VDM  
Sbjct: 158 FTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQM-GFDSDVVTGTALVDMYS 216

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
              +LD A +    MP E +   W A+++  V
Sbjct: 217 TCKKLDHAFNIFCEMP-ERNSVCWSAVIAGYV 247


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 182/504 (36%), Positives = 279/504 (55%), Gaps = 37/504 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LKL  Q H+ ++  G+  + F+ TKL+      G  + ++ +F  + + D +L+ SLI  
Sbjct: 25  LKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRS 84

Query: 96  YVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
             K H  +  +L  ++ M  SNV+P ++T  ++ K   ++  L  G +IHG  +  GF  
Sbjct: 85  TSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGS 144

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           DV +  +LMS Y KCG                                  ++  +R+VFD
Sbjct: 145 DVYVQTALMSFYGKCG----------------------------------VLCNARKVFD 170

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M+ R+V  W +MI+GY QNG   EA+ LF  M+ +  +EPN  + VSVL  C+ L    
Sbjct: 171 KMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMK-EIGVEPNSATFVSVLSACAHLGAFI 229

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G  +H +A+   L+ +V L  +LI+MY++CG++  AR VF DS   ++ + W++++SGY
Sbjct: 230 LGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVF-DSMKERNVVAWTAMISGY 288

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           G +G G +AV L+++M   G  P+ IT V VLSAC  +GL+NEG  ++ S+   YR+ P 
Sbjct: 289 GTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPE 348

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+VDMLGRAG LD A +FIK +  EP+P+IW A++ A  MH N  +     +  +
Sbjct: 349 VEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRL 408

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
             EP NP++YV LSN+YA + R D V  +R  M  + LKK  G S I +  KT+ FS+ D
Sbjct: 409 ASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGD 468

Query: 515 KAHPCSVSIYEMLDDLILIMRGAA 538
           K+H  +  IY  LD L+   R A 
Sbjct: 469 KSHTETNEIYHYLDQLMRKCREAG 492



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 152/336 (45%), Gaps = 47/336 (13%)

Query: 7   RNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYA 66
           R   + V   NYT  +V   ++  A   +L+  +  H  +L  G  S+ +V T L++ Y 
Sbjct: 101 RMVLSNVAPSNYTFTSV---IKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYG 157

Query: 67  LCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
            CG    ++ VF+ ++ + V  +NS+I+GY +N    EA+ LF  M    V P+  T  +
Sbjct: 158 KCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVS 217

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +      +    +G  +H  ++  G  ++V+L  SL++MY +CG  S+   +FD M +RN
Sbjct: 218 VLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN 277

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           V +W   ISG                                  Y  NG   +A+ LF E
Sbjct: 278 VVAWTAMISG----------------------------------YGTNGYGSQAVELFHE 303

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDM 301
           M+ ++ + PN ++ V+VL  C+    ++ G+++       + +  E+ H V     L+DM
Sbjct: 304 MR-RNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHV----CLVDM 358

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
             + G LD A    ++         W++++    +H
Sbjct: 359 LGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMH 394


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 161/495 (32%), Positives = 271/495 (54%), Gaps = 39/495 (7%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+  +  G   + ++   L++ Y    Q T +Q VF  ++  DV  +N++I+ + ++   
Sbjct: 387 HAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFR 446

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            +A ELF  M  S +  + +T+ ++     +  DL  G  IHG +IK G  ++  L  SL
Sbjct: 447 AKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSL 506

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
             MY+ CG      N+F   PQR++ S                                 
Sbjct: 507 TEMYINCGDERAATNMFTRCPQRDLVS--------------------------------- 533

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W ++I+ Y++N +  +AL+LF  M     +EPN V+++++L +C+ L  L  G+ +H +
Sbjct: 534 -WNSLISSYIKNDNAGKALLLFNHM--ISELEPNSVTIINILTSCTQLAHLPLGQCLHAY 590

Query: 283 AIRKE--LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
             R+E  L  D SL NA I MY++CG L  A ++F      +  ++W+++++GYG+HG+G
Sbjct: 591 TTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQ-TRSIVSWNAMITGYGMHGRG 649

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            +A L + +M+  G KP+ ++   VLSAC  SGL   GL++++S++  + I P      C
Sbjct: 650 RDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGC 709

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+LGR G    A+ FI +MP+EP  SIW AL+S+  +  N+++ +  +  L++LEP N
Sbjct: 710 MVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSN 769

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
           P N++ LSN+YA++  W  V ++R  +++RGL K PG SWI I  + H F+  D  HP S
Sbjct: 770 PGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQS 829

Query: 521 VSIYEMLDDLILIMR 535
             IYE L+ L  ++R
Sbjct: 830 ERIYENLNSLTSLIR 844



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 188/381 (49%), Gaps = 42/381 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           SAT+   L+      ++    + HS I  L  I++  V T L+  Y  CG   ++  VF 
Sbjct: 60  SATMPLVLKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFV 119

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  +D+  +N+LI+GYV    + EA+ LF  M  + ++P+  T+  +    GE+ +L +
Sbjct: 120 EMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRL 179

Query: 140 GMLIHGLSIKIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           G  IHG  ++ G F +D  +  +L+  Y++          FD                  
Sbjct: 180 GQEIHGYCLRNGLFDMDAYVGTALVGFYMR----------FD------------------ 211

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                   V S RVF  M  RN+ +W A+I G++  GD  +AL L+  M L + I+ + V
Sbjct: 212 -------AVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSM-LIEGIKFDAV 263

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +++ V+  C+    L  G Q+H  AI+  L +D+ + NAL++MYS  GSL+ +  +F ++
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALF-NA 322

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
               DA  W+S++S Y   G   EA+ L+ KM     K D+ TI  +LS C     +N+G
Sbjct: 323 VPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCND---LNDG 379

Query: 379 LEIYNSVINTYRIKPTTEICA 399
             I+   ++ + +K   E+ A
Sbjct: 380 -SIWGRGLHAHAMKSGIELDA 399



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 183/381 (48%), Gaps = 46/381 (12%)

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           ++ + L   P Q+ LV  S   KD   +NS+I  + K    +  L  ++ M    ++PD 
Sbjct: 7   LSFHGLSSTPEQTHLVNVS---KD---WNSIIKHHTKLKNDHAILSTYTQMESLGITPDS 60

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T+  + K  G +  +  G+ IH     +  + DV +  +L+  Y KCG           
Sbjct: 61  ATMPLVLKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDFYCKCG----------- 109

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
                                  LV  + +VF +M  R++ +W A+I+GYV      EA+
Sbjct: 110 -----------------------LVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAV 146

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-NHDVSLCNALID 300
           +LF+EM+ K  + PN  ++V++L  C  ++ L  G++IHG+ +R  L + D  +  AL+ 
Sbjct: 147 LLFVEMK-KAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVG 205

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
            Y +  ++  + RVF      ++ ++W++I++G+   G   +A+ LY+ M+  G K D +
Sbjct: 206 FYMRFDAV-LSHRVFS-LMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAV 263

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T++ V+ AC   G +  G++++   I  + +     I   +++M    G L+ +      
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIK-FNLINDLFILNALLNMYSDNGSLESSWALFNA 322

Query: 421 MPVEPSPSIWGALVSASVMHG 441
           +P   + ++W +++S+ +  G
Sbjct: 323 VPTSDA-ALWNSMISSYIGFG 342



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 201/457 (43%), Gaps = 46/457 (10%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVF 78
           S TV   L        L+L ++ H   L  G    + +V T L+  Y +      S  VF
Sbjct: 161 SRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY-MRFDAVLSHRVF 219

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  +++  +N++I G++      +AL+L+S+M    +  D  T+  + +   E   L 
Sbjct: 220 SLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLR 279

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +GM +H L+IK   + D+ + N+L++MY   G       LF+ +P  +   WN       
Sbjct: 280 LGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWN------- 332

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                      +MI+ Y+  G   EA+ LF++M+L +RI+ +  
Sbjct: 333 ---------------------------SMISSYIGFGFHAEAIALFIKMRL-ERIKEDVR 364

Query: 259 SLVSVLPTCSSL-IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           ++  +L  C+ L  G   G+ +H  A++  +  D  L NAL+ MY K   +  A+ VFE 
Sbjct: 365 TIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEK 424

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
                D I+W++++S +       +A  L+  M     K +  TIV +L+ C     +  
Sbjct: 425 MR-GLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVF 483

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G  I+   I    ++  T +   + +M    G    A +     P     S W +L+S+ 
Sbjct: 484 GRSIHGFAIKN-GLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVS-WNSLISSY 541

Query: 438 VMHGNSEMQDLAYKSLI-QLEPENPSNYVSLSNLYAS 473
           + + N+    L +  +I +LEP    N V++ N+  S
Sbjct: 542 IKNDNAGKALLLFNHMISELEP----NSVTIINILTS 574



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 149/362 (41%), Gaps = 49/362 (13%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           + S T+   L        L   +  H   +  G   N  ++T L   Y  CG    +  +
Sbjct: 463 FNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNM 522

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F     +D+  +NSLI+ Y+KN    +AL LF++M  S + P+  T+  I     ++  L
Sbjct: 523 FTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHM-ISELEPNSVTIINILTSCTQLAHL 581

Query: 138 NVGMLIHGLSIK--IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
            +G  +H  + +  +   +D  LAN+ ++MY +CGK      +F  +  R++ SWN    
Sbjct: 582 PLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWN---- 637

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                                         AMI GY  +G   +A + F +M L D  +P
Sbjct: 638 ------------------------------AMITGYGMHGRGRDATLAFAQM-LDDGFKP 666

Query: 256 NKVSLVSVLPTCS-SLIGLSGGKQIHG----FAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           N VS  SVL  CS S + ++G +  H     F I  +L H       ++D+  + G    
Sbjct: 667 NNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTH----YGCMVDLLGRGGHFSE 722

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKP-DIITIVGVLSA 368
           A           DA  W +++S   +         ++ K+V L  S P + I +  + +A
Sbjct: 723 AIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAA 782

Query: 369 CG 370
            G
Sbjct: 783 AG 784


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 179/520 (34%), Positives = 283/520 (54%), Gaps = 38/520 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+ + L  S+      L +  H++I+     S+  + + L+T Y+  G    +  +F+
Sbjct: 342 SFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFS 401

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           +++ +DV  + S+I+G+ +N  + EAL+ F  M    V PD   +A+I      ++ +++
Sbjct: 402 TMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDL 461

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IHG  IK G  +DV +A+SL+ MY K G F E                         
Sbjct: 462 GCTIHGFVIKSGLQLDVFVASSLLDMYSKFG-FPE------------------------- 495

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                   R+  +F  M  +N+ AW ++I+ Y +N   D ++ LF ++ L++ + P+ VS
Sbjct: 496 --------RAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQV-LRNDLYPDSVS 546

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
             SVL   SS+  L  GK +HG+ +R  +  D+ + N LIDMY KCG L  A+ +FE  S
Sbjct: 547 FTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERIS 606

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             K+ + W+S++ GYG HG+  +A+ L+++M   G KPD +T + +LS+C  SGLI EGL
Sbjct: 607 -EKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGL 665

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            ++  +   + I+P  E    +VD+ GRAG L  A  F+K MPVEP  SIW +L+ +  +
Sbjct: 666 HLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKI 725

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H N E+ ++    L+ +EP   SNYV L NLY  +  WD  A LR  MK++GLKK+PGCS
Sbjct: 726 HLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCS 785

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLI--LIMRGA 537
           WI +  K   F   D + P +  IY+ L  L   +I +GA
Sbjct: 786 WIEVRNKVDVFYSGDCSSPITTEIYDTLSSLKRNMIKKGA 825



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 190/401 (47%), Gaps = 41/401 (10%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLING 95
           K  KQ HS I+      +PF+ T LI  Y  CG+PT+++ +F  ++ + ++  +N +I G
Sbjct: 156 KEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGG 215

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           + +N     +LE +      NV     +        G+ + ++ G  +H  +IK+GF  D
Sbjct: 216 FGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDD 275

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             +  SL++MY KC        +F+E+P + +  WN  IS                    
Sbjct: 276 PYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALIS-------------------- 315

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                          YV NG   +AL ++ +M+L   +  +  ++++VL T SS+ GL  
Sbjct: 316 --------------AYVGNGYAYDALRIYKQMKLC-TVLSDSFTILNVL-TSSSMAGLYD 359

Query: 276 -GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+ IH   +++ L   +++ +AL+ MYSK G  + A  +F      +D + W S++SG+
Sbjct: 360 LGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMK-ERDVVAWGSVISGF 418

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             + K  EA+  +  M     KPD   +  ++SAC     ++ G  I+  VI +  ++  
Sbjct: 419 CQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKS-GLQLD 477

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
             + + ++DM  + G  +RA +    MP++ +   W +++S
Sbjct: 478 VFVASSLLDMYSKFGFPERAGNIFSDMPLK-NLVAWNSIIS 517



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 177/397 (44%), Gaps = 60/397 (15%)

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           I   V+   + EAL+L++    S V    FT  ++ K    + +L  G  IH   I  G 
Sbjct: 28  IKSLVQQRQYIEALKLYTK---SPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-----NVGSWNVRISGHASSGDF---- 203
             D  + +SL+++YVKCG F++ + +FD++P+      +V  WN  I G+   G      
Sbjct: 85  HSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGM 144

Query: 204 ------------------SLVVR-------------------------SRRVFDQMK-RR 219
                             S +VR                         +R +F ++K R 
Sbjct: 145 VQFGRMQSSGYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRS 204

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N+ AW  MI G+ +NG  + +L  +L +   + ++    S    L  C     +S GKQ+
Sbjct: 205 NIVAWNVMIGGFGENGLWENSLEYYL-LAKTENVKVVSSSFTCTLSACGQGEFVSFGKQV 263

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H  AI+     D  +  +L+ MY KC  ++ A +VF +   +K+   W++++S Y  +G 
Sbjct: 264 HCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVP-DKEIELWNALISAYVGNGY 322

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
            ++A+ +Y +M       D  TI+ VL++   +GL + G  I+  ++    ++ +  I +
Sbjct: 323 AYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKR-PLQSSITIQS 381

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            ++ M  + G  + A     TM  E     WG+++S 
Sbjct: 382 ALLTMYSKFGDSNYANSIFSTMK-ERDVVAWGSVISG 417


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 314/557 (56%), Gaps = 42/557 (7%)

Query: 3   LSSARNTFALVTSRN--YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           ++ AR  F  ++ R+    +  +  +++    + + KL  +  +Q        +  V T 
Sbjct: 61  VNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQ-------KSVIVWTA 113

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +++ Y    +  +++ +FN +  ++V  +N++I+GY +N    EAL+LF  M   NV   
Sbjct: 114 MVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSW 173

Query: 121 DFTLATIS---------KLSGEIKDLNV---GMLIHGLSIKIGFV------------VDV 156
           +  +  ++         +L  E+++ +V     ++ GLS K G V             +V
Sbjct: 174 NTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLS-KNGRVDAAREVFDKMPIRNV 232

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           +  N++++ Y + G+F E L LF+ MP+R++ SWN  ++G   +GD +   R+ ++F  M
Sbjct: 233 VSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLN---RAEQLFHAM 289

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
            ++NV  WTAM+ GYVQ+G  +EAL LF +MQ  D ++P   + V+VL  CS L GL  G
Sbjct: 290 PQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEG 349

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAITWSSIVSGYG 335
           +QIH    +        + +ALI+MYSKCG    A+++F+D  S + D I W+ +++ Y 
Sbjct: 350 QQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYA 409

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            HG G+EA+ L+NKM  LG + + +T VG+L+AC  +GL +EG + ++ ++    I+   
Sbjct: 410 HHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVRE 469

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           +   C++D+ GRAG+LD AL+ I+ +  E S S+WGAL++   +HGN+++  L    +++
Sbjct: 470 DHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNADIGKLVADKVLK 529

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           +EPEN   Y+  SN+YAS    +  A +R  MK +GLKK PGCSWI +      F V DK
Sbjct: 530 MEPENADTYLLASNMYASVGMREEAANVRMKMKKKGLKKQPGCSWIDVGNTVQVFVVNDK 589

Query: 516 AHPCSVSIYEMLDDLIL 532
           +H    S +EML  L+L
Sbjct: 590 SH----SQFEMLKYLLL 602



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 211/437 (48%), Gaps = 54/437 (12%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNSL 92
           +L++   S + + S     N F+S        LC  G+  +++ VF+ +  +D  L+ ++
Sbjct: 30  NLRIRSSSTATLTSEMKRCNYFISK-------LCREGKVNEARKVFDEMSKRDSCLWTTM 82

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPD--DFTLATISKLSGEIKDLNV---GMLIHGLS 147
           I+GY+K    NEA +LF         PD     +   + +SG IK   +     L + + 
Sbjct: 83  ISGYIKCGLINEARKLFDR-------PDAQKSVIVWTAMVSGYIKMNRIEEAERLFNEMP 135

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           ++     +V+  N+++  Y + G+  E L+LF  MP+RNV SWN  ++  A  G    + 
Sbjct: 136 VR-----NVVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTALAHCGR---ID 187

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            + R+F++M+ R+V +WT M+ G  +NG +D A  +F +M +++ +  N +         
Sbjct: 188 DAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSWNAM--------- 238

Query: 268 SSLIGLS-GGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
             + G +  G+      + + +   D+   N ++  + + G L+ A ++F  +   K+ I
Sbjct: 239 --IAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFH-AMPQKNVI 295

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           TW+++++GY  HG   EA+ L+NKM    G KP   T V VL AC     + EG +I+  
Sbjct: 296 TWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQM 355

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALD-FIKTMPVEPSPSIWGALVSASVMHGN- 442
           +  T   + +T + + +++M  + G    A   F   +        W  +++A   HG  
Sbjct: 356 ISKTV-FQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYG 414

Query: 443 -------SEMQDLAYKS 452
                  ++MQ+L +++
Sbjct: 415 NEAINLFNKMQELGFQA 431


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 176/496 (35%), Positives = 268/496 (54%), Gaps = 36/496 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L L +Q H+ ++  G   N +V + LI  YA  GQ   +  +   +   DV  + ++I 
Sbjct: 478 ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GYV++   +EAL+LF  M Y  +  D+   A+       I+ L  G  IH  S   GF  
Sbjct: 538 GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA 597

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+ + N+L+S+Y +CG+  E    F+++  +N  SWN  +SG A SG F           
Sbjct: 598 DLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYF----------- 646

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                                  +EAL +F+ M L+   E N  +  S +   +SL  + 
Sbjct: 647 -----------------------EEALQVFVRM-LRTEAEVNMFTYGSAISAAASLANIK 682

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+QIH   ++   + +  + N+LI +Y+K GS+  A R F D S  ++ I+W+++++GY
Sbjct: 683 QGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGY 741

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG G EA+ L+ +M   G  P+ +T VGVLSAC   GL+ EGL+ + S+   + + P 
Sbjct: 742 SQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPK 801

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
           +E   CVVD+LGRAGQLDRA+++IK MP+     IW  L+SA V+H N E+ + A   L+
Sbjct: 802 SEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLL 861

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEPE+ + YV +SN+YA SR+W      R +MKDRG+KK PG SWI +    H F   D
Sbjct: 862 ELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGD 921

Query: 515 KAHPCSVSIYEMLDDL 530
           K HP +  IYE +  L
Sbjct: 922 KLHPLTNQIYEYIGHL 937



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 197/437 (45%), Gaps = 46/437 (10%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L  S   +  +L +Q H  ++  G  S  +V   L+  Y+   +   ++ +F+++  +D 
Sbjct: 268 LSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDG 327

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             YNSLI+G V+    + ALELF+ M    + PD  T+A++      +  L+ GM +H  
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSH 387

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           +IK G   D+IL  SL+ +Y KC         F      N+  WNV              
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNV-------------- 433

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                               M+  Y Q  +L ++  +F +MQ++  I PN+ +  S+L T
Sbjct: 434 --------------------MLVAYGQLDNLSDSFEIFRQMQMEGMI-PNQFTYPSILRT 472

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA----RRVFEDSSFNK 322
           C+SL  L  G+QIH   I+     +V +C+ LIDMY+K G L  A    RR+ ED     
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPED----- 527

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D ++W+++++GY  H    EA+ L+ +M   G + D I     +SAC     + +G +I+
Sbjct: 528 DVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIH 587

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
                         I   ++ +  R G++  A    + +  + + S W +LVS     G 
Sbjct: 588 AQSYAA-GFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGY 645

Query: 443 SEMQDLAYKSLIQLEPE 459
            E     +  +++ E E
Sbjct: 646 FEEALQVFVRMLRTEAE 662



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 189/414 (45%), Gaps = 43/414 (10%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            L+   T  SL  T + H +I   G    P +   L+  Y   G    +  VF+   ++ 
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK--LSGEIKDLNVGMLI 143
           V+ +N +I+ +V    + +   LF  M    ++P+ +T A + K  + G+I   N    +
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIA-FNYVKQV 182

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H  +   GF    ++AN L+ +Y K G                                 
Sbjct: 183 HSRTFYYGFDSSPLVANLLIDLYSKNG--------------------------------- 209

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
             +  +++VF+ +  +++  W AMI+G  QNG  +EA++LF +M   + I P    L SV
Sbjct: 210 -YIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASE-IFPTPYVLSSV 267

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN-K 322
           L   + +     G+Q+H   I+   + +  +CN L+ +YS+   L  A R+F  S+ N +
Sbjct: 268 LSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIF--STMNSR 325

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D ++++S++SG    G    A+ L+ KM     KPD IT+  +LSAC   G +++G++++
Sbjct: 326 DGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLH 385

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +  I    +     +   ++D+  +   ++ A  F  T   E +  +W  ++ A
Sbjct: 386 SHAIKA-GMSADIILEGSLLDLYSKCADVETAHKFFLTTETE-NIVLWNVMLVA 437



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 5/235 (2%)

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC-SS 269
           +VFD+   R+V++W  MI+ +V      +   LF  M L + I PN  +   VL  C   
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM-LAEGITPNGYTFAGVLKACVGG 172

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
            I  +  KQ+H        +    + N LID+YSK G ++ A++VF +    KD +TW +
Sbjct: 173 DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVF-NCICMKDIVTWVA 231

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++SG   +G   EA+LL+  M      P    +  VLSA  +  L   G +++  VI  +
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK-W 290

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
                T +C  +V +  R+ +L  A     TM      S + +L+S  V  G S+
Sbjct: 291 GFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS-YNSLISGLVQQGFSD 344



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 3/182 (1%)

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L ++L+D Y + G    A +VF+++S N+   +W+ ++  +       +   L+ +M+  
Sbjct: 95  LIDSLVDNYFRHGDQHGAVKVFDENS-NRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAE 153

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G  P+  T  GVL AC    +    ++  +S    Y    +  +   ++D+  + G ++ 
Sbjct: 154 GITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIES 213

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A      + ++   + W A++S    +G  E   L +  +   E   P+ YV  S L AS
Sbjct: 214 AKKVFNCICMKDIVT-WVAMISGLSQNGLEEEAILLFCDMHASEI-FPTPYVLSSVLSAS 271

Query: 474 SR 475
           ++
Sbjct: 272 TK 273


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 176/508 (34%), Positives = 282/508 (55%), Gaps = 25/508 (4%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKDVYLYNSLI 93
            +Q H+  L     ++PFVS++L+  Y+    P  + L     +F+ IQ + +  +N++I
Sbjct: 32  VEQLHAFSLKTAIFNHPFVSSRLLALYS---DPKINDLGYARSIFDRIQRRSLIHWNTII 88

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
             YV+N   ++ + LF  + +  + PD+FTL  + K    +  +  G  IHGL++KIGF 
Sbjct: 89  KCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 147

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQR-----------NVGSWNVRISGHASSGD 202
            DV +  SL++MY KCG+      +FD M  +           N+ SWN  I+G+  SGD
Sbjct: 148 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGD 207

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
           F     +  +F QM   ++  W  MI GY  NG   +A+ +F  M LK    P+  +LVS
Sbjct: 208 FD---SALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFF-MMLKLGSRPSHATLVS 263

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL   S L  L  G+ IH +  +     D  L  +LI+MY+KCG ++ A  VF      K
Sbjct: 264 VLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQ-KK 322

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
               W++I+ G G+HG  + A+ L+ +M   G KP+ I  +GVL+AC  +GL+++G + +
Sbjct: 323 KVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYF 382

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           + ++N Y+I+PT E   C+VD+L RAG L+ A + I+ MP+ P+  IW +L+  S  HG 
Sbjct: 383 DMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGK 442

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
            ++ + A + +I++ PE    Y+ LSN+YA+S  W+ V+ +R MM  RG +K PGCS + 
Sbjct: 443 IDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVE 502

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLDDL 530
             G  H F V D +HP +  IY  + ++
Sbjct: 503 HKGTLHEFIVGDISHPQTKEIYAKMSEM 530


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 184/548 (33%), Positives = 280/548 (51%), Gaps = 69/548 (12%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            L+     R+LK  KQ H+ I + G I   ++S +L+  YA CG    ++ VF+ + H+D
Sbjct: 125 LLKFCLKQRALKEGKQVHAHIKTSGSIG-LYISNRLLDMYAKCGSLVDAEKVFDEMVHRD 183

Query: 86  VYLYNSLINGYVKNHG----------------------------HN---EALELFSNMYY 114
           +  +N +I+GYVK                               HN   EALEL+  M  
Sbjct: 184 LCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQK 243

Query: 115 SNVSP-DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
            + S  +  T+++    S  I  L++G  IHG  +++G   D ++  SL+ MY KCG   
Sbjct: 244 HDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIE 303

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
           E                                  +R +FD+M+ R+V +WT MI+ Y++
Sbjct: 304 E----------------------------------ARYIFDKMEERDVVSWTTMIHTYLK 329

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           NG  +E   LF  + +   I PN  +   VL  C+ L     GKQIH + +R   +   S
Sbjct: 330 NGRREEGFALFRHL-MNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSS 388

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
             +AL+ MYSKCG ++ A+ VFE      D  +W+S++ GY  HG+  +A+  +  ++  
Sbjct: 389 AASALVHMYSKCGDIENAKSVFEILP-QPDLFSWTSLLVGYAQHGQHDKALHFFELLLKS 447

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G+KPD I  +GVLSAC  +GL+++GLE ++S+   + +  T +  AC++D+L RAGQ   
Sbjct: 448 GTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTE 507

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A   I  MP++P   IW AL+    +HGN E+   A KSL ++EPENP+ YV+L+N+YAS
Sbjct: 508 AESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYAS 567

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
           +      A +R  M  RG+ K PG SWI I  + H FSV D +HP S  I E L +L   
Sbjct: 568 AGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKR 627

Query: 534 MRGAAASP 541
           M+     P
Sbjct: 628 MKEVGYVP 635



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 170/319 (53%), Gaps = 7/319 (2%)

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           T+ K   + + L  G  +H   IK    + + ++N L+ MY KCG   +   +FDEM  R
Sbjct: 124 TLLKFCLKQRALKEGKQVHA-HIKTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHR 182

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
           ++ SWN+ ISG+   G+F    ++R +FD+M  R+ ++WTA+I+G VQ+   +EAL L+ 
Sbjct: 183 DLCSWNIMISGYVKGGNFE---KARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYR 239

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
            MQ  D  + NK ++ S L   +++  L  GK+IHG  +R  L+ D  +  +L+DMY KC
Sbjct: 240 LMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKC 299

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           GS++ AR +F D    +D ++W++++  Y  +G+  E   L+  ++     P+  T  GV
Sbjct: 300 GSIEEARYIF-DKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGV 358

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L+AC      + G +I+  ++        +   + +V M  + G ++ A    + +P +P
Sbjct: 359 LNACADLAAEDLGKQIHAYMVRV-GFDSFSSAASALVHMYSKCGDIENAKSVFEILP-QP 416

Query: 426 SPSIWGALVSASVMHGNSE 444
               W +L+     HG  +
Sbjct: 417 DLFSWTSLLVGYAQHGQHD 435


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 179/525 (34%), Positives = 288/525 (54%), Gaps = 39/525 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T     +  A+  +++  K+ H  I+ +G+  + F+ + L+  Y +CG+   +Q VF+  
Sbjct: 107 TYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEF 166

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVG 140
             KDV  +N+LI GY +     ++  +F  M     V P++ T+  +     E K+L +G
Sbjct: 167 DAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLG 226

Query: 141 MLIHGLSIKIGFVVD-VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
             IHG  +K   + + V L  +L+++YVKCG                             
Sbjct: 227 RAIHGYMMKDMVLREGVKLEAALINLYVKCGYLD-------------------------- 260

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    +R++FD++  +N   W ++I GY Q G L+E + L  EM L + ++P++ +
Sbjct: 261 --------GARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSN-LKPDRFT 311

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +  VL  C+ +   + G  +H FA +K +  DV +  ALIDMY+KCG +  AR+VF D  
Sbjct: 312 VSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVF-DQM 369

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             ++  TW++I+SGY  HG+   A+ L+++M   G++PD IT + VL AC  SGL+  G 
Sbjct: 370 NERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGK 429

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           + ++ ++  Y+I P  E   C+VD+LGRAG L  A + IK M VEP+  +WGAL+SA  +
Sbjct: 430 QYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSI 489

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           HGN E+ + A   +I+L   +  +YV L+NLYAS++R++ V  +R MM ++G+ KS GCS
Sbjct: 490 HGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCS 549

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
            I I    H F VADK HP S  IY +LD+L   ++ A   P L 
Sbjct: 550 MIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYVPLLA 594



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 128/254 (50%), Gaps = 5/254 (1%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           + +VF+Q +  + + + AMI  Y  +     A+ ++ +M+    I  +K +   V   C+
Sbjct: 57  ATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACA 116

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           S   +  GK++HG  +R     D  L ++L++ Y  CG +  A++VF++    KD + W+
Sbjct: 117 SQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFD-AKDVVFWN 175

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++++GY   G   ++  ++ +MV +   +P+  T++G++ AC  S  +  G  I+  ++ 
Sbjct: 176 ALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMK 235

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG--NSEM 445
              ++   ++ A ++++  + G LD A      +P E +  +W +L+      G  N  +
Sbjct: 236 DMVLREGVKLEAALINLYVKCGYLDGARKLFDEIP-EKNTVVWNSLICGYCQIGSLNEVI 294

Query: 446 QDLAYKSLIQLEPE 459
           + L    L  L+P+
Sbjct: 295 ELLREMHLSNLKPD 308


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 176/517 (34%), Positives = 289/517 (55%), Gaps = 43/517 (8%)

Query: 29  VSATHRSLKLT--KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           + A  RSL L   +++  Q +  G+  + FV   ++  YA CG+  ++  VF+ +  +D+
Sbjct: 112 LKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDL 171

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             + ++I G  +N    EA++++  M+   V  D   +  + +    +    +G+ IHG 
Sbjct: 172 VCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGY 231

Query: 147 SIKIGFVVDVILANSLMSMYVKCG--KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
            I+   ++DVI+  SL+ MY K G  + + C                             
Sbjct: 232 MIRKDIIMDVIVQTSLVDMYAKNGHLELASC----------------------------- 262

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
                  VF +M  +NV +W+A+I+G+ QNG    AL L ++MQ     +P+ VSLVSVL
Sbjct: 263 -------VFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQ-SFGYKPDSVSLVSVL 314

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             CS +  L  GK +HG+ +R+ L+ D     A+IDMYSKCGSL  AR VF+  SF +D+
Sbjct: 315 LACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISF-RDS 372

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           I+W++I++ YG+HG G EA+ L+ +M     KPD  T   +LSA   SGL+ +G   ++ 
Sbjct: 373 ISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSI 432

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           ++N Y+I+P+ +  AC+VD+L RAG+++ A + I++M  EP  +IW AL+S  + HG   
Sbjct: 433 MVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFL 492

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           + ++A K +++L P++P  Y  +SN +A++RRWD VAE+R +MK  G+KK PG S + ++
Sbjct: 493 IGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVN 552

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           GK H F + DK+H     I ++L  L   M+     P
Sbjct: 553 GKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVP 589



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 148/352 (42%), Gaps = 46/352 (13%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            +Q   T    K+    H  ++    I +  V T L+  YA  G    +  VF  + +K+
Sbjct: 212 LIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKN 271

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           V  +++LI+G+ +N     AL+L  +M      PD  +L ++     ++  L +G  +HG
Sbjct: 272 VISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHG 331

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             ++     D + + +++ MY KCG  S    +FD++  R+  SWN              
Sbjct: 332 YIVR-RLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWN-------------- 376

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                               A+I  Y  +G  +EAL LFL+M+ +  ++P+  +  S+L 
Sbjct: 377 --------------------AIIASYGIHGSGEEALSLFLQMR-ETNVKPDHATFASLLS 415

Query: 266 TCSSLIGLSGGK-----QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
             S    +  G+      ++ + I+    H       ++D+ S+ G ++ A+ + E    
Sbjct: 416 AFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYA----CMVDLLSRAGRVEEAQELIESMIT 471

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLSACGR 371
                 W +++SG   HGK     +   K++ L    P I ++V    A  R
Sbjct: 472 EPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATAR 523


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 173/494 (35%), Positives = 274/494 (55%), Gaps = 43/494 (8%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           F +  L+  YA  G+   S+ +F S   +D+  +N++I+ + ++   +EAL  F  M   
Sbjct: 149 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 208

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG-FVVDVILANSLMSMYVKCGKFSE 174
            V  D  T+A++      ++ L+VG  IH   ++    + +  + ++L+ MY  C     
Sbjct: 209 GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNC----- 263

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
                     R V S                    RRVFD +  R +  W AMI+GY +N
Sbjct: 264 ----------RQVES-------------------GRRVFDHILGRRIELWNAMISGYARN 294

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC-SSLIGLSGGKQIHGFAIRKELNHDVS 293
           G  ++AL+LF+EM     + PN  ++ SV+P C  SL  ++ GK+IH +AIR  L  D++
Sbjct: 295 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDIT 354

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           + +AL+DMY+KCG L+ +RRVF +   NK+ ITW+ ++   G+HGKG EA+ L+  MV  
Sbjct: 355 VGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHGKGEEALELFKNMVAE 413

Query: 354 G-----SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
                 +KP+ +T + V +AC  SGLI+EGL ++  + + + ++PT++  ACVVD+LGRA
Sbjct: 414 AGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRA 473

Query: 409 GQLDRALDFIKTMPVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           GQL+ A + + TMP E      W +L+ A  +H N E+ ++A K+L+ LEP   S+YV L
Sbjct: 474 GQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLL 533

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           SN+Y+S+  W+   E+R  M+  G+KK PGCSWI    + H F   D +HP S  ++  L
Sbjct: 534 SNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFL 593

Query: 528 DDLILIMRGAAASP 541
           + L   MR     P
Sbjct: 594 ETLSEKMRKEGYVP 607



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 142/335 (42%), Gaps = 63/335 (18%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           T+   L   +    L + K+ H+ +L     I N FV + L+  Y  C Q    + VF+ 
Sbjct: 216 TIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDH 275

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATI-SKLSGEIKDLN 138
           I  + + L+N++I+GY +N    +AL LF  M   + + P+  T+A++       +  + 
Sbjct: 276 ILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIA 335

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL----FDEMPQRNVGSWNVRI 194
            G  IH  +I+     D+ + ++L+ MY KCG    CLNL    F+EMP +NV +WNV  
Sbjct: 336 KGKEIHAYAIRNMLASDITVGSALVDMYAKCG----CLNLSRRVFNEMPNKNVITWNV-- 389

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK---- 250
                                           +I     +G  +EAL LF  M  +    
Sbjct: 390 --------------------------------LIMACGMHGKGEEALELFKNMVAEAGRG 417

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGG-------KQIHGFAIRKELNHDVSLCNALIDMYS 303
              +PN+V+ ++V   CS    +S G       K  HG     E   D   C  ++D+  
Sbjct: 418 GEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGV----EPTSDHYAC--VVDLLG 471

Query: 304 KCGSLDCARRVFEDSSFNKDAI-TWSSIVSGYGLH 337
           + G L+ A  +        D +  WSS++    +H
Sbjct: 472 RAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIH 506



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 131/288 (45%), Gaps = 30/288 (10%)

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           R+  +W   +    ++ D  EA+  ++EM +     P+  +  +VL   S L  L  G+Q
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSG-ARPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 279 IHGFAIRKEL-NHDVSLCNALIDMYSKCGSL--------------------DCARRVFED 317
           IH  A++    +  V++ N L++MY KCG +                    D ++ +FE 
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE- 172

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
           S  ++D ++W++++S +    +  EA+  +  MV  G + D +TI  VL AC     ++ 
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD---RALDFIKTMPVEPSPSIWGALV 434
           G EI+  V+    +   + + + +VDM     Q++   R  D I    +E    +W A++
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIE----LWNAMI 288

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482
           S    +G  E   + +  +I++    P+     S + A      A+A+
Sbjct: 289 SGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAK 336


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 175/528 (33%), Positives = 287/528 (54%), Gaps = 43/528 (8%)

Query: 11  ALVTSRNYTSATVQH-------FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
           AL+  +     +VQH        L+  +  ++L+  +Q H+ IL  G  SN FV   LI 
Sbjct: 105 ALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQ 164

Query: 64  AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
            YA CGQ   ++ VF+ +  + +  +NS+++GY KN   +E ++LF  +    +  DD T
Sbjct: 165 MYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVT 224

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           + ++    G + +L +G LI    +  G   +  L  SL+ MY KCG+            
Sbjct: 225 MISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQ------------ 272

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
                                 V  +R++FD+M +R+V AW+AMI+GY Q     EAL L
Sbjct: 273 ----------------------VDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNL 310

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           F EMQ K  + PN+V++VSVL +C+ L     GK +H +  +K++   V+L   LID Y+
Sbjct: 311 FHEMQ-KGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYA 369

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           KCG +D +  VF++ SF K+  TW++++ G   +G+G  A+  ++ M+    KP+ +T +
Sbjct: 370 KCGYIDRSVEVFKEMSF-KNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFI 428

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
           GVLSAC  + L+++G  ++NS+   + I+P  E   C+VD+LGRAG L+ A  FI  MP 
Sbjct: 429 GVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPF 488

Query: 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483
            P+  +W  L+++   H N EM + + + + +LEP +  +Y+ LSN YA   R +    +
Sbjct: 489 PPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRV 548

Query: 484 RTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           R+++K++ +KK PGCS I + G  H F   D  H  S  I++ LD ++
Sbjct: 549 RSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMM 596



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 4/225 (1%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +F+ + +    A+  MI G       D AL+LF +M  K  ++ +K +  SVL  CS + 
Sbjct: 77  IFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKS-VQHDKFTFSSVLKACSRMK 135

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  G+Q+H   ++     +  + N LI MY+ CG +  AR VF D    +  + W+S++
Sbjct: 136 ALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVF-DGMPERSIVAWNSML 194

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           SGY  +G   E V L+ K++ L  + D +T++ VL ACGR   +  G E+    I +  +
Sbjct: 195 SGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIG-ELIGEYIVSKGL 253

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +    +   ++DM  + GQ+D A      M      + W A++S 
Sbjct: 254 RRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVA-WSAMISG 297


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 184/576 (31%), Positives = 293/576 (50%), Gaps = 69/576 (11%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK+  Q H+  L     S+  V T  +  YA CG    +Q +FNS+    +  YN++I 
Sbjct: 292 ALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIV 351

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G V+N    EAL+ F  +  S +  ++ +L+        IK    G  +H LS+K     
Sbjct: 352 GCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRS 411

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD-------FSLVV 207
           ++ +ANS++ MY KC   SE   +FDEM +R+  SWN  I+ H  +G+       F+ ++
Sbjct: 412 NICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASML 471

Query: 208 RSRRVFDQMKRRNV-----------------------------YAWTAMINGYVQNGDLD 238
           R R   DQ    +V                             +   A+I+ Y + G ++
Sbjct: 472 RLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIE 531

Query: 239 EALVL-------------------------------FLEMQLKDRIEPNKVSLVSVLPTC 267
           EA  +                               F EM LK  ++P+  +   VL  C
Sbjct: 532 EAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEM-LKMSVKPDNFTYAIVLDAC 590

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           ++L  +  GKQIHG  I+ EL+ DV + + L+DMYSKCG++  +  VFE +  NKD +TW
Sbjct: 591 ANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAP-NKDFVTW 649

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++++ GY  HG G EA+  + +M     +P+  T V +L AC   G I++GL  +N+++ 
Sbjct: 650 NAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLT 709

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            Y ++P  E  +C++D++GR+G++  AL  I+ MP E    IW  L+S   +HGN E+ +
Sbjct: 710 EYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAE 769

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A  +++QLEPE+ S  + LSN+YA +  W  V+E+R MM+   LKK PGCSWI +  + 
Sbjct: 770 KATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEV 829

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           H F V +K HP    IY++L  L+  M+     P +
Sbjct: 830 HAFLVGNKTHPRYEEIYKILSVLLDEMKWIGYIPDI 865



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 139/535 (25%), Positives = 247/535 (46%), Gaps = 81/535 (15%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  H +Q  + + SLK  KQ+H++++  G I + ++S  L+  Y  C     +  VF  +
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104

Query: 82  QHKDVYLYNSLIN-------------------------------GYVKNHGHNEALELFS 110
             +DV  YN++I+                               G+++N    +++++F 
Sbjct: 105 SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFL 164

Query: 111 NMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
           +M  S  V  D  T A + K    ++D  +G+ +HGL +++GF  DV+  ++L+ MY KC
Sbjct: 165 DMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKC 224

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
            +  + L +F E+P +N   W                                 W+A+I 
Sbjct: 225 KRLDDSLKIFSEIPVKN---W-------------------------------VCWSAIIA 250

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           G VQN +    L LF EMQ K  I  ++    SV  +C+ L  L  G Q+H  A++ +  
Sbjct: 251 GCVQNDEHILGLELFKEMQ-KVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFG 309

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT-WSSIVSGYGLHGKGHEAVLLYN 348
            D+++  A +DMY+KCGSL  A+R+F  +S  K ++  +++I+ G   + KG EA+  + 
Sbjct: 310 SDITVGTATLDMYAKCGSLADAQRIF--NSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQ 367

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN-SVINTYRIKPTTEICAC--VVDML 405
            ++  G   + I++ G  SAC       +G ++++ SV +T R    + IC    ++DM 
Sbjct: 368 LLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLR----SNICVANSILDMY 423

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE-NPSNY 464
           G+   L  A      M    + S W A+++A   +GN E     + S+++L  E +   Y
Sbjct: 424 GKCEALSEACCMFDEMERRDAVS-WNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTY 482

Query: 465 VSLSNLYASSRRWDAVAEL--RTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
            S+    +S +  ++  E+  R +    GL    G + I ++ K      A K H
Sbjct: 483 GSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIH 537



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/503 (24%), Positives = 218/503 (43%), Gaps = 76/503 (15%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H  I+ +G   +    + L+  YA C +   S  +F+ I  K+   ++++I G V+N 
Sbjct: 197 QVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQND 256

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
            H   LELF  M    +       A++ +    +  L VG  +H  ++K  F  D+ +  
Sbjct: 257 EHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGT 316

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD-------FSLVVRSRRVF 213
           + + MY KCG  ++   +F+ +P+ ++  +N  I G   +         F L+++S   F
Sbjct: 317 ATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGF 376

Query: 214 DQMK-----------------------------RRNVYAWTAMINGYVQNGDLDEALVLF 244
           +++                              R N+    ++++ Y +   L EA  +F
Sbjct: 377 NEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMF 436

Query: 245 LEMQLKD------------------------------RIEPNKVSLVSVLPTCSSLIGLS 274
            EM+ +D                              R+EP++ +  SVL  CSS   L+
Sbjct: 437 DEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALN 496

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G +IH   I+  L  D  +  ALIDMY KCG ++ A+++  D    +  ++W++I++G+
Sbjct: 497 SGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKI-HDRIEQQTMVSWNAIIAGF 555

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            L     +A   + +M+ +  KPD  T   VL AC     +  G +I+  +I    +   
Sbjct: 556 TLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKL-ELHSD 614

Query: 395 TEICACVVDMLGRAGQL-DRALDFIKTMPVEPSPSI--WGALVSASVMHGNSEMQDLAYK 451
             I + +VDM  + G + D AL F K     P+     W A++     HG  E + L Y 
Sbjct: 615 VYITSTLVDMYSKCGNMQDSALVFEKA----PNKDFVTWNAMICGYAQHGLGE-EALGYF 669

Query: 452 SLIQLEPENPSNYVSLSNLYASS 474
             +QLE   P++   +S L A +
Sbjct: 670 ERMQLENVRPNHATFVSILRACA 692



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 160/328 (48%), Gaps = 12/328 (3%)

Query: 102 HNEALELFSNMYYSNVSPDDFTLAT----ISKLSGEIKDLNV---GMLIHGLSIKIGFVV 154
           +N+ L +F+    S +  +   L T     S +  E  D N    G   H   I  GF+ 
Sbjct: 17  YNKTLRIFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIP 76

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           DV ++N LM MY++C   +    +F++M QR+V S+N  ISG+A +G+ +L   +   F 
Sbjct: 77  DVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNL---ANEFFY 133

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
              +R+V +W +M++G++QNG+  +++ +FL+M   + +  ++ +   VL  CS L    
Sbjct: 134 DTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGG 193

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G Q+HG  +R     DV   +AL+DMY+KC  LD + ++F +    K+ + WS+I++G 
Sbjct: 194 LGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPV-KNWVCWSAIIAGC 252

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             + +    + L+ +M  +G          V  +C     +  G +++   +        
Sbjct: 253 VQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKC-DFGSD 311

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMP 422
             +    +DM  + G L  A     ++P
Sbjct: 312 ITVGTATLDMYAKCGSLADAQRIFNSLP 339



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 146/315 (46%), Gaps = 40/315 (12%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  ++ ++L    + H++I+  G   + FV   LI  Y  CG   +++ + + I+ + +
Sbjct: 486 LKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTM 545

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N++I G+       +A   F  M   +V PD+FT A +      +  + +G  IHG 
Sbjct: 546 VSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQ 605

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            IK+    DV + ++L+ MY KCG   +   +F++ P ++  +WN  I G          
Sbjct: 606 IIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICG---------- 655

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                                   Y Q+G  +EAL  F  MQL++ + PN  + VS+L  
Sbjct: 656 ------------------------YAQHGLGEEALGYFERMQLEN-VRPNHATFVSILRA 690

Query: 267 CSSLIGLSGGKQIHGF-AIRKE--LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           C+ +  +  G  +H F A+  E  L   +   + +ID+  + G +  A ++ ++  F  D
Sbjct: 691 CAHMGFIDKG--LHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEAD 748

Query: 324 AITWSSIVSGYGLHG 338
           A+ W +++S   +HG
Sbjct: 749 AVIWRTLLSICKIHG 763


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 183/564 (32%), Positives = 302/564 (53%), Gaps = 50/564 (8%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ-PT--- 72
           N+T A+V   L + A     K   Q H+  L  G      VS  L++ Y+ C   P+   
Sbjct: 148 NFTFASVLAGLALVADDE--KQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLH 205

Query: 73  QSQLVFNSIQHKD--------------------------------VYLYNSLINGYVKNH 100
            ++ VF+ I  KD                                +  YN++I+GYV   
Sbjct: 206 SARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRG 265

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK---IGFVVDVI 157
            + EALE+   M  S +  D+FT  ++ +       L +G  +H   ++     F  D  
Sbjct: 266 FYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD-- 323

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
             NSL+S+Y KCGKF E   +F++MP +++ SWN  +SG+ SSG    +  ++ +F +MK
Sbjct: 324 --NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGH---IGEAKLIFKEMK 378

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            +N+ +W  MI+G  +NG  +E L LF  M+ ++  EP   +    + +C+ L     G+
Sbjct: 379 EKNILSWMIMISGLAENGFGEEGLKLFSCMK-REGFEPCDYAFSGAIKSCAVLGAYCNGQ 437

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           Q H   ++   +  +S  NALI MY+KCG ++ AR+VF       D+++W+++++  G H
Sbjct: 438 QYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMP-CLDSVSWNALIAALGQH 496

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G G EAV +Y +M+  G +PD IT++ VL+AC  +GL+++G + ++S+   YRI P  + 
Sbjct: 497 GHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADH 556

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            A ++D+L R+G+   A   I+++P +P+  IW AL+S   +HGN E+  +A   L  L 
Sbjct: 557 YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLI 616

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           PE+   Y+ LSN++A++ +W+ VA +R +M+DRG+KK   CSWI +  + H F V D +H
Sbjct: 617 PEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSH 676

Query: 518 PCSVSIYEMLDDLILIMRGAAASP 541
           P + ++Y  L DL   MR     P
Sbjct: 677 PEAEAVYIYLQDLGKEMRRLGYVP 700



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 211/449 (46%), Gaps = 55/449 (12%)

Query: 51  HISNP--FVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYVKNHGHNEAL 106
            IS P     T +++ Y   G  T ++ VF    +  +D  +YN++I G+  N+    A+
Sbjct: 74  EISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAI 133

Query: 107 ELFSNMYYSNVSPDDFTLATI-SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
            LF  M +    PD+FT A++ + L+    D    +  H  ++K G      ++N+L+S+
Sbjct: 134 NLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSV 193

Query: 166 YVKCGKFSECLN----LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR-N 220
           Y KC      L+    +FDE+ +++  SW   ++G+  +G F L      + + M     
Sbjct: 194 YSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDL---GEELLEGMDDNMK 250

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
           + A+ AMI+GYV  G   EAL +   M +   IE ++ +  SV+  C++   L  GKQ+H
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRM-VSSGIELDEFTYPSVIRACATAGLLQLGKQVH 309

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
            + +R+E +      N+L+ +Y KCG  D AR +FE     KD ++W++++SGY   G  
Sbjct: 310 AYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMP-AKDLVSWNALLSGYVSSGHI 367

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT------YRIKPT 394
            EA L++ +M     + +I++ + ++S    +G   EGL++++ +         Y     
Sbjct: 368 GEAKLIFKEM----KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGA 423

Query: 395 TEICA----------------------------CVVDMLGRAGQLDRALDFIKTMPVEPS 426
            + CA                             ++ M  + G ++ A    +TMP   S
Sbjct: 424 IKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDS 483

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            S W AL++A   HG+       Y+ +++
Sbjct: 484 VS-WNALIAALGQHGHGAEAVDVYEEMLK 511



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 49/357 (13%)

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L +   +HG  I  GF     + N L+ +Y K  + +    LFDE+ + +  +    +SG
Sbjct: 30  LQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSG 89

Query: 197 HASSGDFSLVVRSRRVFDQMK--RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           + +SGD +L   +R VF++     R+   + AMI G+  N D   A+ LF +M+  +  +
Sbjct: 90  YCASGDITL---ARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMK-HEGFK 145

Query: 255 PNKVSLVSVLPTCSSLIGLSGGK--QIHGFAIRKELNHDVSLCNALIDMYSKCGS----L 308
           P+  +  SVL    +L+     +  Q H  A++    +  S+ NAL+ +YSKC S    L
Sbjct: 146 PDNFTFASVLAGL-ALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLL 204

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGY------------------------------GLHG 338
             AR+VF D    KD  +W+++++GY                              G   
Sbjct: 205 HSARKVF-DEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVN 263

Query: 339 KG--HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           +G   EA+ +  +MV  G + D  T   V+ AC  +GL+  G +++  V+   R   +  
Sbjct: 264 RGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLR--REDFSFH 321

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
               +V +  + G+ D A    + MP +   S W AL+S  V  G+     L +K +
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVS-WNALLSGYVSSGHIGEAKLIFKEM 377


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 182/565 (32%), Positives = 294/565 (52%), Gaps = 51/565 (9%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNS--- 80
           H LQ   +  +LKL    HS + + G +   P    +LI  Y+  G    ++ +F+    
Sbjct: 30  HLLQCCTSLTTLKLI---HSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHH 86

Query: 81  -----IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
                 Q  + +L N+++  Y       EA++L+  M    V  ++FT   + K+     
Sbjct: 87  HHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASEL 146

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
               G ++HG  ++ GF  D+ +  +L+ MY KCG+  +   +FD M  R+V  W   I+
Sbjct: 147 GAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMIT 206

Query: 196 GHASS-----------------------------------GDFSLVV-RSRRVFDQMKRR 219
            +  +                                   GD  + + R+R VFD+M+ R
Sbjct: 207 LYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEER 266

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N  +W +M++GY QNG   +AL LF +MQ  +  +PN V+ + ++  CS L     G+++
Sbjct: 267 NGISWNSMLSGYTQNGRPTDALSLFNQMQASE-CDPNPVTALIMVSACSYLGSKHLGRKL 325

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF-NKDAITWSSIVSGYGLHG 338
           H F I  +++ D +L NA++DMY KCG LD A  +F +     +D  +W+ ++SGYG+HG
Sbjct: 326 HNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHG 385

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
            G EA+ L+++M   G +P+ IT   +LSAC  +GLI+EG + +   +    ++P  +  
Sbjct: 386 HGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFAD-MTKLSVRPEMKHY 444

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
           AC+VDMLGRAG L+ A   IK +P  PS  +WGAL+ A  +HGN+E+ ++A  +L QLEP
Sbjct: 445 ACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEP 504

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
           E+   YV +SN+YA+S +W  V  +R  MK RGLKK    S I    + H F  AD++ P
Sbjct: 505 EHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSP 564

Query: 519 CSVSIYEMLDDLILIMRGAAASPHL 543
               +Y  ++ L + M+     P L
Sbjct: 565 YYREVYRKVESLAIEMKMVGYVPDL 589


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 186/543 (34%), Positives = 289/543 (53%), Gaps = 55/543 (10%)

Query: 2   ILSSARNTFALVTSRNYTSATVQ--HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           ++S A   F  +  +N  S TV     LQ      + +L          +    +    T
Sbjct: 206 MISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRL--------FDMMPEKDVVTRT 257

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            +I  Y   G+  +++++F+ +  ++V  + ++I GYV+N   + A +LF       V P
Sbjct: 258 NMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFE------VMP 311

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +   ++  + L G                                 Y  CG+  E   LF
Sbjct: 312 EKNEVSWTAMLKG---------------------------------YTNCGRLDEASELF 338

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           + MP ++V + N  I     +G+   V ++R+VFDQM+ ++   W+AMI  Y + G   +
Sbjct: 339 NAMPIKSVVACNAMILCFGQNGE---VPKARQVFDQMREKDEGTWSAMIKVYERKGLELD 395

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           AL LF  MQ ++ I PN  SL+SVL  C+ L  L  G++IH   +R + + DV + + L+
Sbjct: 396 ALELFRMMQ-REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLL 454

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
            MY KCG+L  A++VF D    KD + W+SI++GY  HG G EA+ +++ M   G  PD 
Sbjct: 455 SMYIKCGNLAKAKQVF-DRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDD 513

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           +T VGVLSAC  +G + +GLEI+NS+   Y+++   E  AC+VD+LGRAG+L+ A+D I+
Sbjct: 514 VTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIE 573

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            MP+E    IWGAL+ A   H   ++ ++A K L+ LEP+N   ++ LSN+YAS  RWD 
Sbjct: 574 KMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDD 633

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA-HPCSVSIYEMLDDLILIMRGAA 538
           VAELR  M+DR + K PGCSWI +  K H F+  D + HP    I  +L+ L  ++R A 
Sbjct: 634 VAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAG 693

Query: 539 ASP 541
             P
Sbjct: 694 YYP 696



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 199/427 (46%), Gaps = 53/427 (12%)

Query: 46  ILSLGHISNPFVS-TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
           +L+  + SN  +S   LIT Y+  GQ  ++++VF+ ++ K++  +NS++ GY +N    E
Sbjct: 88  VLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQE 147

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-VVDVILANSLM 163
           A  +F  M   N      T++    +SG I   N GM+     +       +V+   +++
Sbjct: 148 AQNMFDKMSERN------TISWNGLVSGYI---NNGMINEAREVFDRMPERNVVSWTAMV 198

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG---------------------- 201
             YVK G  SE   LF +MP++NV SW V + G    G                      
Sbjct: 199 RGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTN 258

Query: 202 ------DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                     +V +R +FD+M RRNV +WT MI GYVQN  +D A  LF  M      E 
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP-----EK 313

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQI-HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           N+VS  ++L   ++   L    ++ +   I+      V  CNA+I  + + G +  AR+V
Sbjct: 314 NEVSWTAMLKGYTNCGRLDEASELFNAMPIK-----SVVACNAMILCFGQNGEVPKARQV 368

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F D    KD  TWS+++  Y   G   +A+ L+  M   G +P+  +++ VLS C     
Sbjct: 369 F-DQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLAN 427

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++ G EI+  ++ + +      + + ++ M  + G L +A        V+    +W +++
Sbjct: 428 LDHGREIHAQLVRS-QFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSII 485

Query: 435 SASVMHG 441
           +    HG
Sbjct: 486 TGYAQHG 492



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 151/315 (47%), Gaps = 29/315 (9%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           ++I  NS+++ Y +  +  E  N+FD+M +RN  SWN  +SG+ ++G   ++  +R VFD
Sbjct: 128 NIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNG---MINEAREVFD 184

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  RNV +WTAM+ GYV+ G + EA  LF +M      E N VS   +L        + 
Sbjct: 185 RMPERNVVSWTAMVRGYVKEGMISEAETLFWQMP-----EKNVVSWTVMLGGLLQEGRID 239

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
              ++      K    DV     +I  Y + G L  AR +F D    ++ ++W+++++GY
Sbjct: 240 EACRLFDMMPEK----DVVTRTNMIGGYCQVGRLVEARMLF-DEMPRRNVVSWTTMITGY 294

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
                 ++ V +  K+  +  + + ++   +L      G ++E  E++N++       P 
Sbjct: 295 ----VQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM-------PI 343

Query: 395 TEICAC--VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
             + AC  ++   G+ G++ +A      M  E     W A++      G  E+  L    
Sbjct: 344 KSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAMIKVYERKG-LELDALELFR 401

Query: 453 LIQLEPENPSNYVSL 467
           ++Q E   P N+ SL
Sbjct: 402 MMQREGIRP-NFPSL 415


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 176/541 (32%), Positives = 281/541 (51%), Gaps = 67/541 (12%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+   + V++      L    H Q+L LG  +  FV + L+  YA  G    ++ VF
Sbjct: 145 TRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVF 204

Query: 79  NSIQHKDVYLYNSLINGYVK-------------------------------NHGHNEALE 107
             ++ K V +YN+LI G ++                               N    EAL+
Sbjct: 205 QEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALD 264

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           +F  M    V  D +T  +I    G +  L  G  IH    +  +  +V + ++L+ MY 
Sbjct: 265 VFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYS 324

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           KC                     ++R++                VF +M  RN+ +WTAM
Sbjct: 325 KCR--------------------SIRLA--------------EAVFRRMTCRNIISWTAM 350

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I GY QN   +EA+  F EMQ+ D I+P+  +L SV+ +C++L  L  G Q H  A+   
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQM-DGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
           L   +++ NAL+ +Y KCGS++ A R+F++ SF+ D ++W+++V+GY   GK  E + L+
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVTGYAQFGKAKETIDLF 468

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            KM+  G KPD +T +GVLSAC R+GL+ +G + ++S+   + I P  +   C++D+  R
Sbjct: 469 EKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSR 528

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           +G+   A +FIK MP  P    W  L+S+  + GN E+   A ++L++ +P+NP++YV L
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLL 588

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
            +++A+  +W  VA LR  M+DR +KK PGCSWI    K H FS  D++HP S  IYE L
Sbjct: 589 CSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648

Query: 528 D 528
           +
Sbjct: 649 E 649



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 214/473 (45%), Gaps = 26/473 (5%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    L++A A        + +F S+  +D   YN+LI G+        +++L+  + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 114 YS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
              +V P   TL+ +  ++  + D  +G  +H   +++GF     + + L+ MY K G  
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            +   +F EM  + V  +N  I+G        ++  ++ +F  M  R+   WT M+ G  
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRC---KMIEDAKGLFQLMVDRDSITWTTMVTGLT 254

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG   EAL +F  M+  + +  ++ +  S+L  C +L  L  GKQIH +  R     +V
Sbjct: 255 QNGLQLEALDVFRRMR-AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNV 313

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            + +AL+DMYSKC S+  A  VF   +  ++ I+W++++ GYG +    EAV  +++M  
Sbjct: 314 FVGSALVDMYSKCRSIRLAEAVFRRMT-CRNIISWTAMIVGYGQNACSEEAVRAFSEMQM 372

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G KPD  T+  V+S+C     + EG + +   + +  ++  T +   +V + G+ G ++
Sbjct: 373 DGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYIT-VSNALVTLYGKCGSIE 431

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENPSNYVSLSNLY 471
            A      M      S W ALV+     G + E  DL  K L       P     +  L 
Sbjct: 432 DAHRLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLAN--GLKPDGVTFIGVLS 488

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           A SR               GL +  GC +     K H     D  + C + +Y
Sbjct: 489 ACSR--------------AGLVEK-GCDYFDSMQKDHGIVPIDDHYTCMIDLY 526



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 153/340 (45%), Gaps = 36/340 (10%)

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             L N L++ Y K G+ +    +FDEMP  N+ + N  +S  A S    LV    R+F  
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHS---RLVPDMERLFAS 104

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  R+  ++ A+I G+   G    ++ L+  +  ++ + P +++L +++   S+L   + 
Sbjct: 105 MPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRAL 164

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS---------------- 319
           G  +H   +R        + + L+DMY+K G +  ARRVF++                  
Sbjct: 165 GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLR 224

Query: 320 --------------FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
                          ++D+ITW+++V+G   +G   EA+ ++ +M   G   D  T   +
Sbjct: 225 CKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSI 284

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L+ACG    + EG +I+  +  T+  +    + + +VDM  +   +  A    + M    
Sbjct: 285 LTACGALAALEEGKQIHAYITRTW-YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
             S W A++     +  SE    A+ S +Q++   P ++ 
Sbjct: 344 IIS-WTAMIVGYGQNACSEEAVRAF-SEMQMDGIKPDDFT 381


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 163/479 (34%), Positives = 274/479 (57%), Gaps = 37/479 (7%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           V   L+  Y  CG    S  VF S+  +D   + +++  + ++  H+EALE+   +    
Sbjct: 404 VGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEG 463

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           +  D   + +I +    +K +++   +H  +I+ G ++D+IL N L+ +Y +CG+F   L
Sbjct: 464 IMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNG-LLDLILENRLIDIYGECGEFDHSL 522

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
           NLF                                   +++++++ +WT+MIN    NG 
Sbjct: 523 NLFQ----------------------------------RVEKKDIVSWTSMINCCTNNGR 548

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
           L+ A+ LF EMQ K  I+P+ V+LVS+L   + L  L+ GKQ+HGF IR+    +  + +
Sbjct: 549 LNGAVFLFTEMQ-KANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVS 607

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           +L+DMYS CGS++ A RVFE +   KD + W+++++  G+HG G +A+ L+ +M+  G  
Sbjct: 608 SLVDMYSGCGSMNYAIRVFERAKC-KDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLT 666

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD ++ + +L AC  S L+ EG    + +++ YR+KP  E  ACVVD+LGR+GQ + A +
Sbjct: 667 PDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYE 726

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
           FIKTMP++P  ++W AL+ A  +H N  +  +A   L++LEP+NP NY+ +SN++A   +
Sbjct: 727 FIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGK 786

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           W+   E RT M +RGL+K+P CSWI I    H F+  D  H  S +I+  L ++  ++R
Sbjct: 787 WNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLR 845



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 210/430 (48%), Gaps = 54/430 (12%)

Query: 40  KQSHSQILSLGHIS---NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           +Q H+  ++ G ++   + F++TKL+  Y  CG+   ++ +FN +  + V+ +N+L+  Y
Sbjct: 77  RQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAY 136

Query: 97  VKNHGHNEALELFSNMYYSNV---SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           + +    EA+ ++  M  S     +PD  TLA++ K  G   D   G  +HGL++K+G  
Sbjct: 137 LSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLD 196

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQ--RNVGSWNVRISGHASSGDFSLVVRSRR 211
              ++AN+L+ MY KCG     L +F+ + Q  R+V SWN                    
Sbjct: 197 KSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWN-------------------- 236

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                         ++++G VQNG   EAL LF  MQ       N  + V+VL  C+ L 
Sbjct: 237 --------------SVVSGCVQNGRTLEALALFRGMQ-SAGFPMNSYTSVAVLQVCAELG 281

Query: 272 GLSGGKQIHGFAIR--KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
            LS G+++H   ++   ELN     CNAL+ MY+K G +D A RVF   +  KD I+W+S
Sbjct: 282 LLSLGRELHAALLKCGSELNIQ---CNALLVMYAKYGRVDSALRVFGQIA-EKDYISWNS 337

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++S Y  +    EA+  + +M+  G +PD   +V + SA G    +N G E +   I   
Sbjct: 338 MLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQ- 396

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
           R+    ++   ++DM  + G ++ +    ++M +    S W  +++       S     A
Sbjct: 397 RLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHIS-WTTILAC---FAQSSRHSEA 452

Query: 450 YKSLIQLEPE 459
            + +++L+ E
Sbjct: 453 LEMILELQKE 462



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 14/226 (6%)

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           +A +    + GDL +AL      QL  R  P +     VL   ++    + G+Q+H  A+
Sbjct: 30  SASLKRLCKEGDLRQAL-----RQLTTRAPPAREHYGWVLDLVAARRAAAEGRQVHAHAV 84

Query: 285 RK-ELNHDVS--LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
               LN D    L   L+ MY +CG +D ARR+F +    +   +W+++V  Y   G   
Sbjct: 85  TTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLF-NGMPARTVFSWNALVGAYLSSGSAG 143

Query: 342 EAVLLYNKM---VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           EA+ +Y  M      GS PD  T+  VL ACG  G    G E++   +    +  +T + 
Sbjct: 144 EAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKV-GLDKSTLVA 202

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSP-SIWGALVSASVMHGNS 443
             ++ M  + G LD AL   + +  +    + W ++VS  V +G +
Sbjct: 203 NALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRT 248



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 35  SLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           SL   KQ H  ++     I  P VS+ L+  Y+ CG    +  VF   + KDV L+ ++I
Sbjct: 583 SLTKGKQVHGFLIRRNFPIEGPVVSS-LVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMI 641

Query: 94  NGYVKNHGH-NEALELFSNMYYSNVSPD 120
           N     HGH  +A++LF  M  + ++PD
Sbjct: 642 NA-TGMHGHGKQAIDLFKRMLQTGLTPD 668


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 186/586 (31%), Positives = 292/586 (49%), Gaps = 67/586 (11%)

Query: 22   TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
            T  H L       +    K  H  IL  G  SN  ++  L+  Y  CG   ++Q VF   
Sbjct: 488  TFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGT 547

Query: 82   QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            + +D+  +NS+I G+ ++  +  A +LF  M    + PD  T A++       + L +G 
Sbjct: 548  RARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGR 607

Query: 142  LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
             IH L I+ G  +DV L N+L++MY++CG   +   +F  +  RNV SW   I G A  G
Sbjct: 608  QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQG 667

Query: 202  D----------------------FSLVVR---SRRVFDQMKR-----------RNVYAWT 225
            +                      FS +++   S    D+ K+            +     
Sbjct: 668  EDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN 727

Query: 226  AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV--------------------------- 258
            A+I+ Y ++G + +A  +F +M  +D +  NK+                           
Sbjct: 728  ALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVL 787

Query: 259  ---SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
               S VS+L  CSS   L  GK++H   +++++  DV +  ALI MY+KCGSL+ A+ VF
Sbjct: 788  NKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVF 847

Query: 316  EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
             D+   K+ +TW+++++ Y  HG   +A+  +N M   G KPD  T   +LSAC  SGL+
Sbjct: 848  -DNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLV 906

Query: 376  NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
             EG  I++S+ + + + PT E   C+V +LGRAG+   A   I  MP  P  ++W  L+ 
Sbjct: 907  MEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLG 966

Query: 436  ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
            A  +HGN  + + A  + ++L   NP+ YV LSN+YA++ RWD VA++R +M+ RG++K 
Sbjct: 967  ACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKE 1026

Query: 496  PGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            PG SWI +    H F  AD++HP +  IYE L  L L M  A  SP
Sbjct: 1027 PGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSP 1072



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 195/424 (45%), Gaps = 41/424 (9%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L+  K+ HS+I+  G+  +P V   L+  Y  C     ++ VF+ I  +DV  YN+++  
Sbjct: 199 LEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGL 258

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y +     E + LF  M    + PD  T   +         L+ G  IH L++  G   D
Sbjct: 259 YAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSD 318

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + +  +L +M+V+CG                                   V  +++  + 
Sbjct: 319 IRVGTALATMFVRCGD----------------------------------VAGAKQALEA 344

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
              R+V  + A+I    Q+G  +EA   + +M+  D +  N+ + +SVL  CS+   L  
Sbjct: 345 FADRDVVVYNALIAALAQHGHYEEAFEQYYQMR-SDGVVMNRTTYLSVLNACSTSKALGA 403

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+ IH        + DV + N+LI MY++CG L  AR +F ++   +D I+W++I++GY 
Sbjct: 404 GELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELF-NTMPKRDLISWNAIIAGYA 462

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
                 EA+ LY +M   G KP  +T + +LSAC  S   ++G  I+  ++ +  IK   
Sbjct: 463 RREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNG 521

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            +   +++M  R G +  A +  +        S W ++++    HG+ E    AYK  ++
Sbjct: 522 HLANALMNMYRRCGSIMEAQNVFEGTRARDIIS-WNSMIAGHAQHGSYEA---AYKLFLE 577

Query: 456 LEPE 459
           ++ E
Sbjct: 578 MKKE 581



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 190/401 (47%), Gaps = 39/401 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  + L    T   L   K+ H   ++ G  S+  V T L T +  CG    ++    + 
Sbjct: 286 TYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAF 345

Query: 82  QHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
             +DV +YN+LI    + HGH  EA E +  M    V  +  T  ++       K L  G
Sbjct: 346 ADRDVVVYNALIAALAQ-HGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG 404

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
            LIH    ++G   DV + NSL+SMY +CG          ++P                 
Sbjct: 405 ELIHSHISEVGHSSDVQIGNSLISMYARCG----------DLP----------------- 437

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                  R+R +F+ M +R++ +W A+I GY +  D  EA+ L+ +MQ  + ++P +V+ 
Sbjct: 438 -------RARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQ-SEGVKPGRVTF 489

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           + +L  C++    S GK IH   +R  +  +  L NAL++MY +CGS+  A+ VFE +  
Sbjct: 490 LHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR- 548

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            +D I+W+S+++G+  HG    A  L+ +M   G +PD IT   VL  C     +  G +
Sbjct: 549 ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ 608

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
           I+  +I +  ++    +   +++M  R G L  A +   ++
Sbjct: 609 IHMLIIES-GLQLDVNLGNALINMYIRCGSLQDAYEVFHSL 648



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 200/434 (46%), Gaps = 41/434 (9%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            +Q     RSL   K+ H+Q++  G   + F+S  LI  Y  C   + +  VF  +  +D
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRD 147

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           V  +NSLI+ Y +     +A +LF  M  +   P   T  +I        +L  G  IH 
Sbjct: 148 VISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHS 207

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             I+ G+  D  + NSL++MY KC          +++P                      
Sbjct: 208 KIIEAGYQRDPRVQNSLLNMYGKC----------EDLPS--------------------- 236

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
              +R+VF  + RR+V ++  M+  Y Q   ++E + LF +M   + I P+KV+ +++L 
Sbjct: 237 ---ARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMS-SEGIPPDKVTYINLLD 292

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
             ++   L  GK+IH  A+ + LN D+ +  AL  M+ +CG +  A++  E  + ++D +
Sbjct: 293 AFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFA-DRDVV 351

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
            ++++++    HG   EA   Y +M   G   +  T + VL+AC  S  +  G E+ +S 
Sbjct: 352 VYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSH 410

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           I+        +I   ++ M  R G L RA +   TMP     S W A+++    +   E 
Sbjct: 411 ISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLIS-WNAIIAG---YARRED 466

Query: 446 QDLAYKSLIQLEPE 459
           +  A K   Q++ E
Sbjct: 467 RGEAMKLYKQMQSE 480



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 155/337 (45%), Gaps = 45/337 (13%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           IH   ++ G   D+ L+N L++MYVKC   S+   +F +MP                   
Sbjct: 104 IHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMP------------------- 144

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                          RR+V +W ++I+ Y Q G   +A  LF EMQ    I P+K++ +S
Sbjct: 145 ---------------RRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFI-PSKITYIS 188

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           +L  C S   L  GK+IH   I      D  + N+L++MY KC  L  AR+VF    + +
Sbjct: 189 ILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVF-SGIYRR 247

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D +++++++  Y       E + L+ +M   G  PD +T + +L A     +++EG  I+
Sbjct: 248 DVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIH 307

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
              +N   +     +   +  M  R G +  A   ++    +    ++ AL++A   HG+
Sbjct: 308 KLAVNE-GLNSDIRVGTALATMFVRCGDVAGAKQALEAF-ADRDVVVYNALIAALAQHGH 365

Query: 443 SEMQDLAYKSLIQLEPE----NPSNYVSLSNLYASSR 475
            E    A++   Q+  +    N + Y+S+ N  ++S+
Sbjct: 366 YEE---AFEQYYQMRSDGVVMNRTTYLSVLNACSTSK 399



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 146/354 (41%), Gaps = 38/354 (10%)

Query: 21   ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
            +T    L+   +   L   K+  + IL+ G+  +  V   LI+AY+  G  T ++ VF+ 
Sbjct: 689  STFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDK 748

Query: 81   IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
            + ++D+  +N +I GY +N     AL+    M    V  + F+  +I         L  G
Sbjct: 749  MPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEG 808

Query: 141  MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
              +H   +K     DV +  +L+SMY KCG   E   +FD   ++NV +WN         
Sbjct: 809  KRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWN--------- 859

Query: 201  GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                     AMIN Y Q+G   +AL  F  M  K+ I+P+  + 
Sbjct: 860  -------------------------AMINAYAQHGLASKALDFFNCMD-KEGIKPDGSTF 893

Query: 261  VSVLPTCS-SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
             S+L  C+ S + + G +       +  L+  +     L+ +  + G    A  +     
Sbjct: 894  TSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMP 953

Query: 320  FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV--GVLSACGR 371
            F  DA  W +++    +HG    A    N  + L ++   + ++   V +A GR
Sbjct: 954  FPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGR 1007



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 4/162 (2%)

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           E N+ + V ++  C+    L+  K+IH   +   +  D+ L N LI+MY KC S+  A +
Sbjct: 79  ETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQ 138

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VF      +D I+W+S++S Y   G   +A  L+ +M   G  P  IT + +L+AC    
Sbjct: 139 VFLKMP-RRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPA 197

Query: 374 LINEGLEIYNSVINT-YRIKPTTEICACVVDMLGRAGQLDRA 414
            +  G +I++ +I   Y+  P  +    +++M G+   L  A
Sbjct: 198 ELEYGKKIHSKIIEAGYQRDPRVQ--NSLLNMYGKCEDLPSA 237


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 173/535 (32%), Positives = 297/535 (55%), Gaps = 40/535 (7%)

Query: 34  RSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL 92
           ++LK  K  H+++L    + S+ FV  KL+  Y+  G    +  VF+ I   + YL+ SL
Sbjct: 13  KTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSL 72

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           I+GYV+N  ++EA  LF  M    +S  +FT++++ K    +     G  ++G +     
Sbjct: 73  IHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMC 132

Query: 153 VVDVILAN-------------------------------SLMSMYVKCGKFSECLNLFDE 181
             D++  N                               S++  YVK G  +E   LFD 
Sbjct: 133 EKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDS 192

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           MP +++ SWNV +SG+   GD++    +R +FDQM  +N+  W+ MI GY +NG   +AL
Sbjct: 193 MPVKDLASWNVMVSGYMDIGDYT--NGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKAL 250

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            LF   + +D I+P++  ++ ++  CS L  +   + I    +   L  D+ +  +LIDM
Sbjct: 251 ELFERFKEQD-IKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDM 309

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y+KCGS++ A ++FE  +  KD + +S++++    HG G +A+ L++KM     KPD +T
Sbjct: 310 YAKCGSIEKALQMFE-MAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVT 368

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
            +GVL+AC   GL++EG + +  +   + I+P+ +  ACVVD+LGR G L+ A + I+ M
Sbjct: 369 FLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNM 428

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
           P+ P   +WGAL++A  +H N ++ ++A   L ++EP+N  NY+ LSN+YA++ RW +VA
Sbjct: 429 PIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVA 488

Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSI----YEMLDDLIL 532
           ++R  +++  ++K+ G SWI +    H F + D +H  S SI    Y + +D+ L
Sbjct: 489 KVRAKIREHRVRKNRGSSWIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDMKL 543


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 178/553 (32%), Positives = 286/553 (51%), Gaps = 45/553 (8%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   +  + L + K+ H  I+     SN FV+  L+  Y  CG    +  +F+  
Sbjct: 272 TLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKF 331

Query: 82  QHKDVYLYNSLINGYVKN-----------------------------HGH------NEAL 106
             K    YN++I GY++N                              GH      ++AL
Sbjct: 332 ARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDAL 391

Query: 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
            LF ++    + PD FTL +I     ++  +  G  IH ++I  G   +  +  +L+ MY
Sbjct: 392 MLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMY 451

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK----RRNVY 222
            KC         FDE+ +R+  +WN  ISG+A       + + R + ++MK      NVY
Sbjct: 452 CKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQ---IGKIRELVERMKSDGFEPNVY 508

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W +++ G V+N   D A+ LF EMQ+   + P+  ++  +L  CS L  +  GKQ+H +
Sbjct: 509 TWNSILAGLVENKQYDLAMQLFNEMQVSS-LRPDIYTVGIILAACSKLATIHRGKQVHAY 567

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
           +IR   + D  +   L+DMY+KCGS+    +V+   S N + +  +++++ Y +HG G E
Sbjct: 568 SIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKIS-NPNLVCHNAMLTAYAMHGHGEE 626

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
            ++++ +M+    +PD +T + VLS+C  +G I  G E +  ++ TY I PT +   C+V
Sbjct: 627 GIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECF-YLMETYNITPTLKHYTCMV 685

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+L RAG+LD A   IK MP+E     W AL+    +H    + ++A + LI+LEP N  
Sbjct: 686 DLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIHKEVALGEIAAEKLIELEPSNTG 745

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
           NYV L+NLYAS+ RW  +A+ R +M D+G++KSPGCSWI      H F  +DK+H     
Sbjct: 746 NYVLLANLYASAGRWHDLAKTRELMNDKGMQKSPGCSWIEDRDGVHIFLASDKSHQRVEE 805

Query: 523 IYEMLDDLILIMR 535
           IY MLD+L   +R
Sbjct: 806 IYFMLDNLTKFIR 818



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 225/493 (45%), Gaps = 81/493 (16%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN- 94
           L+L +Q H  +L  G ++N +V   LI  Y  CG   +++ V   +  KD   +NS+I  
Sbjct: 150 LELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITA 209

Query: 95  ----------------------------------GYVKNHGHNEALELFSNMYYSNVSPD 120
                                             G+  N    E++ELF+ M  + V+PD
Sbjct: 210 CVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPD 269

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
             TLA++      +K L VG  +HG  ++     +  +AN+L+ MY +CG       +F 
Sbjct: 270 ARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFS 329

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR----RNVYAWTAMINGYVQNGD 236
           +  ++   S+N  I G+  +G+   V +++ +F QM++    R+  +W  MI+G+V N  
Sbjct: 330 KFARKCAASYNTMIVGYLENGN---VGKAKELFYQMEQEGVERDRISWNCMISGHVDNFM 386

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
            D+AL+LF ++ L + IEP+  +L S+L   + +  +  GK+IH  AI K L  +  +  
Sbjct: 387 FDDALMLFRDL-LMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGG 445

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG--------------LHGKGHE 342
           AL++MY KC  +  A+  F++ S  +D  TW++++SGY               +   G E
Sbjct: 446 ALVEMYCKCNDIIAAQMAFDEIS-ERDTSTWNALISGYARCNQIGKIRELVERMKSDGFE 504

Query: 343 ---------------------AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
                                A+ L+N+M     +PDI T+  +L+AC +   I+ G ++
Sbjct: 505 PNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQV 564

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +   I          I A +VDM  + G +         +   P+     A+++A  MHG
Sbjct: 565 HAYSIRA-GYDSDAHIGATLVDMYAKCGSIKHCYQVYNKIS-NPNLVCHNAMLTAYAMHG 622

Query: 442 NSEMQDLAYKSLI 454
           + E   + ++ ++
Sbjct: 623 HGEEGIVIFRRML 635



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 216/470 (45%), Gaps = 55/470 (11%)

Query: 10  FALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCG 69
           F+L+ +   TS T    LQ S    SL L KQ HS  +  G  ++ FV TKL+  Y++  
Sbjct: 24  FSLLHTPPLTSTTYSTILQSS---NSLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINS 80

Query: 70  QPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP--DDFTLATI 127
               +  +F+ +  K+++ + +++  ++      +   LF       +    D F    +
Sbjct: 81  SFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVV 140

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
             +   + DL +G  +HG+ +K GFV +V + N+L+ MY KCG   E   + + M Q++ 
Sbjct: 141 LNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDC 200

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQM----KRRNVYAWTAMINGYVQNGDLDEALVL 243
            SWN  I+   ++G   +V  +  + + M       NV  W+A+I G+  N    E++ L
Sbjct: 201 VSWNSIITACVANG---VVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVEL 257

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           F  M +   + P+  +L SVLP CS +  L  GK++HG+ +R EL  +  + NAL+ MY 
Sbjct: 258 FARM-VGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYR 316

Query: 304 KCGSLDCARRVF----------------------------------EDSSFNKDAITWSS 329
           +CG +  A ++F                                  E     +D I+W+ 
Sbjct: 317 RCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNC 376

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++SG+  +    +A++L+  ++  G +PD  T+  +L+       I +G EI++  I   
Sbjct: 377 MISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAI-VK 435

Query: 390 RIKPTTEICACVVDMLGRAGQL---DRALDFIKTMPVEPSPSIWGALVSA 436
            ++  + +   +V+M  +   +     A D I     E   S W AL+S 
Sbjct: 436 GLQSNSFVGGALVEMYCKCNDIIAAQMAFDEIS----ERDTSTWNALISG 481



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 149/357 (41%), Gaps = 78/357 (21%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A    ++  K+ HS  +  G  SN FV   L+  Y  C     +Q+ F+
Sbjct: 406 SFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFD 465

Query: 80  SIQHKDVYLYNSLINGY-----------------------------------VKNHGHNE 104
            I  +D   +N+LI+GY                                   V+N  ++ 
Sbjct: 466 EISERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDL 525

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           A++LF+ M  S++ PD +T+  I     ++  ++ G  +H  SI+ G+  D  +  +L+ 
Sbjct: 526 AMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVD 585

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MY KCG    C  +++++   N+   N                                 
Sbjct: 586 MYAKCGSIKHCYQVYNKISNPNLVCHN--------------------------------- 612

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC----SSLIGLSGGKQIH 280
            AM+  Y  +G  +E +V+F  M L  R+ P+ V+ +SVL +C    S  IG      + 
Sbjct: 613 -AMLTAYAMHGHGEEGIVIFRRM-LDSRVRPDHVTFLSVLSSCVHAGSIKIGYECFYLME 670

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            + I   L H       ++D+ S+ G LD A ++ ++     D++TWS+++ G  +H
Sbjct: 671 TYNITPTLKH----YTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIH 723


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 186/543 (34%), Positives = 289/543 (53%), Gaps = 55/543 (10%)

Query: 2   ILSSARNTFALVTSRNYTSATVQ--HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           ++S A   F  +  +N  S TV     LQ      + +L          +    +    T
Sbjct: 206 MISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRL--------FDMMPEKDVVTRT 257

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            +I  Y   G+  +++++F+ +  ++V  + ++I GYV+N   + A +LF       V P
Sbjct: 258 NMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFE------VMP 311

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +   ++  + L G                                 Y  CG+  E   LF
Sbjct: 312 EKNEVSWTAMLKG---------------------------------YTNCGRLDEASELF 338

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           + MP ++V + N  I     +G+   V ++R+VFDQM+ ++   W+AMI  Y + G   +
Sbjct: 339 NAMPIKSVVACNAMILCFGQNGE---VPKARQVFDQMREKDEGTWSAMIKVYERKGLELD 395

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           AL LF  MQ ++ I PN  SL+SVL  C+ L  L  G++IH   +R + + DV + + L+
Sbjct: 396 ALELFRMMQ-REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLL 454

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
            MY KCG+L  A++VF D    KD + W+SI++GY  HG G EA+ +++ M   G  PD 
Sbjct: 455 SMYIKCGNLAKAKQVF-DRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDD 513

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           +T VGVLSAC  +G + +GLEI+NS+   Y+++   E  AC+VD+LGRAG+L+ A+D I+
Sbjct: 514 VTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIE 573

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            MP+E    IWGAL+ A   H   ++ ++A K L+ LEP+N   ++ LSN+YAS  RWD 
Sbjct: 574 KMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDD 633

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA-HPCSVSIYEMLDDLILIMRGAA 538
           VAELR  M+DR + K PGCSWI +  K H F+  D + HP    I  +L+ L  ++R A 
Sbjct: 634 VAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAG 693

Query: 539 ASP 541
             P
Sbjct: 694 YYP 696



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 199/427 (46%), Gaps = 53/427 (12%)

Query: 46  ILSLGHISNPFVS-TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
           +L+  + SN  +S   LIT Y+  GQ  ++++VF+ ++ K++  +NS++ GY +N    E
Sbjct: 88  VLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQE 147

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-VVDVILANSLM 163
           A  +F  M   N      T++    +SG I   N GM+     +       +V+   +++
Sbjct: 148 AQNMFDKMSERN------TISWNGLVSGYI---NNGMINEAREVFDRMPERNVVSWTAMV 198

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG---------------------- 201
             YVK G  SE   LF +MP++NV SW V + G    G                      
Sbjct: 199 RGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTN 258

Query: 202 ------DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                     +V +R +FD+M RRNV +WT MI GYVQN  +D A  LF  M      E 
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP-----EK 313

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQI-HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           N+VS  ++L   ++   L    ++ +   I+      V  CNA+I  + + G +  AR+V
Sbjct: 314 NEVSWTAMLKGYTNCGRLDEASELFNAMPIK-----SVVACNAMILCFGQNGEVPKARQV 368

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F D    KD  TWS+++  Y   G   +A+ L+  M   G +P+  +++ VLS C     
Sbjct: 369 F-DQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLAN 427

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++ G EI+  ++ + +      + + ++ M  + G L +A        V+    +W +++
Sbjct: 428 LDHGREIHAQLVRS-QFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSII 485

Query: 435 SASVMHG 441
           +    HG
Sbjct: 486 TGYAQHG 492



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 151/315 (47%), Gaps = 29/315 (9%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           ++I  NS+++ Y +  +  E  N+FD+M +RN  SWN  +SG+ ++G   ++  +R VFD
Sbjct: 128 NIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNG---MINEAREVFD 184

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  RNV +WTAM+ GYV+ G + EA  LF +M      E N VS   +L        + 
Sbjct: 185 RMPERNVVSWTAMVRGYVKEGMISEAETLFWQMP-----EKNVVSWTVMLGGLLQEGRID 239

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
              ++      K    DV     +I  Y + G L  AR +F D    ++ ++W+++++GY
Sbjct: 240 EACRLFDMMPEK----DVVTRTNMIGGYCQVGRLVEARMLF-DEMPRRNVVSWTTMITGY 294

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
                 ++ V +  K+  +  + + ++   +L      G ++E  E++N++       P 
Sbjct: 295 ----VQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM-------PI 343

Query: 395 TEICAC--VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
             + AC  ++   G+ G++ +A      M  E     W A++      G  E+  L    
Sbjct: 344 KSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAMIKVYERKG-LELDALELFR 401

Query: 453 LIQLEPENPSNYVSL 467
           ++Q E   P N+ SL
Sbjct: 402 MMQREGIRP-NFPSL 415


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 176/541 (32%), Positives = 281/541 (51%), Gaps = 67/541 (12%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+   + V++      L    H Q+L LG  +  FV + L+  YA  G    ++ VF
Sbjct: 145 TRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVF 204

Query: 79  NSIQHKDVYLYNSLINGYVK-------------------------------NHGHNEALE 107
             ++ K V +YN+LI G ++                               N    EAL+
Sbjct: 205 QEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALD 264

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           +F  M    V  D +T  +I    G +  L  G  IH    +  +  +V + ++L+ MY 
Sbjct: 265 VFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYS 324

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           KC                     ++R++                VF +M  RN+ +WTAM
Sbjct: 325 KCR--------------------SIRLA--------------EAVFRRMTCRNIISWTAM 350

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I GY QN   +EA+  F EMQ+ D I+P+  +L SV+ +C++L  L  G Q H  A+   
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQM-DGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
           L   +++ NAL+ +Y KCGS++ A R+F++ SF+ D ++W+++V+GY   GK  E + L+
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVTGYAQFGKAKETIDLF 468

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            KM+  G KPD +T +GVLSAC R+GL+ +G + ++S+   + I P  +   C++D+  R
Sbjct: 469 EKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSR 528

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           +G+   A +FIK MP  P    W  L+S+  + GN E+   A ++L++ +P+NP++YV L
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLL 588

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
            +++A+  +W  VA LR  M+DR +KK PGCSWI    K H FS  D++HP S  IYE L
Sbjct: 589 CSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648

Query: 528 D 528
           +
Sbjct: 649 E 649



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 214/473 (45%), Gaps = 26/473 (5%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    L++A A        + +F S+  +D   YN+LI G+        +++L+  + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 114 YS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
              +V P   TL+ +  ++  + D  +G  +H   +++GF     + + L+ MY K G  
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            +   +F EM  + V  +N  I+G        ++  ++ +F  M  R+   WT M+ G  
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRC---KMIEDAKGLFQLMVDRDSITWTTMVTGLT 254

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG   EAL +F  M+  + +  ++ +  S+L  C +L  L  GKQIH +  R     +V
Sbjct: 255 QNGLQLEALDVFRRMR-AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNV 313

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            + +AL+DMYSKC S+  A  VF   +  ++ I+W++++ GYG +    EAV  +++M  
Sbjct: 314 FVGSALVDMYSKCRSIRLAEAVFRRMT-CRNIISWTAMIVGYGQNACSEEAVRAFSEMQM 372

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G KPD  T+  V+S+C     + EG + +   + +  ++  T +   +V + G+ G ++
Sbjct: 373 DGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYIT-VSNALVTLYGKCGSIE 431

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENPSNYVSLSNLY 471
            A      M      S W ALV+     G + E  DL  K L       P     +  L 
Sbjct: 432 DAHRLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLAN--GLKPDGVTFIGVLS 488

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           A SR               GL +  GC +     K H     D  + C + +Y
Sbjct: 489 ACSR--------------AGLVEK-GCDYFDSMQKDHGIVPIDDHYTCMIDLY 526



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 153/340 (45%), Gaps = 36/340 (10%)

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             L N L++ Y K G+ +    +FDEMP  N+ + N  +S  A S    LV    R+F  
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHS---RLVPDMERLFAS 104

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  R+  ++ A+I G+   G    ++ L+  +  ++ + P +++L +++   S+L   + 
Sbjct: 105 MPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRAL 164

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS---------------- 319
           G  +H   +R        + + L+DMY+K G +  ARRVF++                  
Sbjct: 165 GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLR 224

Query: 320 --------------FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
                          ++D+ITW+++V+G   +G   EA+ ++ +M   G   D  T   +
Sbjct: 225 CKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSI 284

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L+ACG    + EG +I+  +  T+  +    + + +VDM  +   +  A    + M    
Sbjct: 285 LTACGALAALEEGKQIHAYITRTW-YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
             S W A++     +  SE    A+ S +Q++   P ++ 
Sbjct: 344 IIS-WTAMIVGYGQNACSEEAVRAF-SEMQMDGIKPDDFT 381


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 173/520 (33%), Positives = 288/520 (55%), Gaps = 9/520 (1%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H L++   H++    K+ H+QI+  G      +   L+ AY  C     +  +F+ +  +
Sbjct: 7   HRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQR 66

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLI 143
           D   + S++  Y +    N+ L +F  M+ ++ + PD F  AT+ K    +  L +G  +
Sbjct: 67  DHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQV 126

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H   +   FV D ++ +SL+ MY KCG  S   ++FD +  +   SW   +SG+A SG  
Sbjct: 127 HARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSG-- 184

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK--DRIEPNKVSLV 261
            L   +  +F +   RN+Y+WTA+I+G VQ+G   +   +F+EM+ +  D ++P  + L 
Sbjct: 185 -LKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDP--LVLS 241

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SV+  C++L  L  GKQIHG  I       + + NAL+DMY+KC  +  AR VF +   +
Sbjct: 242 SVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVF-NRMLH 300

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D ++W+SI+ G   HG+  EA+ LY++MV    KP+ +T VG++ AC  +GL+++G ++
Sbjct: 301 RDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKL 360

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + ++I  YRI P+ ++  C +D+L R+G L+ A D IKTMP +P    W AL+SA   HG
Sbjct: 361 FKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHG 420

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N+EM       L+ L    PS YV LSN+YA + +W+ ++ +R +M D  +K+ PG S I
Sbjct: 421 NTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSI 480

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            +  ++  F   +  HP    I+ +L +L   MR     P
Sbjct: 481 DLGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIP 520


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 173/531 (32%), Positives = 288/531 (54%), Gaps = 27/531 (5%)

Query: 22   TVQHFLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNS 80
            T+   L   +    L++ ++ H   L  G  I N FV T L+  Y  C QP + +LVF+ 
Sbjct: 536  TLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDG 595

Query: 81   IQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNV 139
            +  + V ++N+L+ GY +N   ++AL LF  M   S   P+  T A++       K  + 
Sbjct: 596  VVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSD 655

Query: 140  GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
               IHG  +K GF  D  + N+LM MY + G+      +F  M +R++ SWN  I+G   
Sbjct: 656  KEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIV 715

Query: 200  SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
             G +   +    +  +M+RR     +     Y  +G +                +PN V+
Sbjct: 716  CGRYDDAL---NLLHEMQRRQGEDGSDTFVDYEDDGGVP--------------FKPNSVT 758

Query: 260  LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            L++VLP C++L  L  GK+IH +A++++L  DV++ +AL+DMY+KCG L+ A RVF+   
Sbjct: 759  LMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMP 818

Query: 320  FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS------KPDIITIVGVLSACGRSG 373
              ++ ITW+ ++  YG+HGKG EA+ L+  M   G       +P+ +T + + +AC  SG
Sbjct: 819  I-RNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSG 877

Query: 374  LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP-SIWGA 432
            +++EGL +++++  ++ ++P  +  AC+VD+LGR+G++  A + I TMP   +    W +
Sbjct: 878  MVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSS 937

Query: 433  LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
            L+ A  +H + E  ++A K L  LEP   S+YV +SN+Y+S+  WD    +R  MK+ G+
Sbjct: 938  LLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGV 997

Query: 493  KKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            +K PGCSWI    + H F   D +HP S  ++E L+ L   MR     P +
Sbjct: 998  RKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDI 1048



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 206/459 (44%), Gaps = 64/459 (13%)

Query: 10  FALVTSRN-----YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITA 64
           F L+ S N     +T  +V H    S     ++L KQ H+  L  G +   + +  L+T 
Sbjct: 421 FRLMLSENVDPTSFTLVSVAH--ACSHVRGGVRLGKQVHAYTLRNGDLRT-YTNNALVTM 477

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           YA  G+   ++ +F     KD+  +N++I+   +N    EAL     M    V PD  TL
Sbjct: 478 YARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTL 537

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           A++     +++ L +G  IH  +++ G  + +  +  +L+ MY  C +  +   +FD + 
Sbjct: 538 ASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVV 597

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
           +R V  WN                                  A++ GY +N   D+AL L
Sbjct: 598 RRTVAVWN----------------------------------ALLAGYARNEFDDQALRL 623

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           F+EM  +    PN  +  SVLP C      S  + IHG+ +++    D  + NAL+DMYS
Sbjct: 624 FVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYS 683

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV------------ 351
           + G ++ ++ +F   +  +D ++W+++++G  + G+  +A+ L ++M             
Sbjct: 684 RMGRVEISKTIFGRMN-KRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFV 742

Query: 352 ------CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
                  +  KP+ +T++ VL  C     + +G EI+   +   ++     + + +VDM 
Sbjct: 743 DYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQ-KLAMDVAVGSALVDMY 801

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            + G L+ A      MP+  +   W  L+ A  MHG  E
Sbjct: 802 AKCGCLNLASRVFDQMPIR-NVITWNVLIMAYGMHGKGE 839



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 181/391 (46%), Gaps = 43/391 (10%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHI--SNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           L+ +A    L L KQ H+ +   GH   S+  V+  L+  Y  CG  T ++ VF+ I  +
Sbjct: 337 LKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDR 396

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK-DLNVGMLI 143
           D   +NS+I    +      +L LF  M   NV P  FTL +++     ++  + +G  +
Sbjct: 397 DHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQV 456

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H  +++ G  +     N+L++MY + G+ ++   LF                        
Sbjct: 457 HAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFG----------------------- 492

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                   VFD    +++ +W  +I+   QN   +EAL +++ + + D + P+ V+L SV
Sbjct: 493 --------VFDG---KDLVSWNTVISSLSQNDRFEEAL-MYVYLMIVDGVRPDGVTLASV 540

Query: 264 LPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           LP CS L  L  G++IH +A+R  +L  +  +  AL+DMY  C      R VF D    +
Sbjct: 541 LPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVF-DGVVRR 599

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-PDIITIVGVLSACGRSGLINEGLEI 381
               W+++++GY  +    +A+ L+ +M+      P+  T   VL AC R  + ++   I
Sbjct: 600 TVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGI 659

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
           +  ++          +   ++DM  R G+++
Sbjct: 660 HGYIVKR-GFGKDKYVQNALMDMYSRMGRVE 689



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 165/360 (45%), Gaps = 52/360 (14%)

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV--DVILANSLMSMYVKCGKFSECLN 177
           D+F    + K +  + DL +G  IH    K G      V +ANSL++MY KCG  +    
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           +FD++P R+  SWN                                  +MI    +  + 
Sbjct: 389 VFDDIPDRDHVSWN----------------------------------SMIATLCRFEEW 414

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI-GLSGGKQIHGFAIRKELNHDVSLC- 295
           + +L LF  + L + ++P   +LVSV   CS +  G+  GKQ+H + +R   N D+    
Sbjct: 415 ELSLHLF-RLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLR---NGDLRTYT 470

Query: 296 -NALIDMYSKCGSLDCARRVFEDSSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
            NAL+ MY++ G ++ A+ +F    F+ KD ++W++++S    + +  EA++    M+  
Sbjct: 471 NNALVTMYARLGRVNDAKALF--GVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVD 528

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G +PD +T+  VL AC +   +  G EI+   +    +   + +   +VDM     Q  +
Sbjct: 529 GVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKK 588

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
               +    V  + ++W AL++    +  +E  D A +  +++  E  S +   +  +AS
Sbjct: 589 G-RLVFDGVVRRTVAVWNALLAG---YARNEFDDQALRLFVEMISE--SEFCPNATTFAS 642



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           ++RR+   W  ++     +    +A+  +  M        N  +  +VL   +++  L  
Sbjct: 290 VERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDN-FAFPAVLKAAAAVHDLCL 348

Query: 276 GKQIHG--FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           GKQIH   F         V++ N+L++MY KCG L  AR+VF+D   ++D ++W+S+++ 
Sbjct: 349 GKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIP-DRDHVSWNSMIAT 407

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR-SGLINEGLEIYNSVINTYRIK 392
                +   ++ L+  M+     P   T+V V  AC    G +  G +++   +    ++
Sbjct: 408 LCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLR 467

Query: 393 PTTEICACVVDMLGRAGQLDRA 414
             T     +V M  R G+++ A
Sbjct: 468 TYTN--NALVTMYARLGRVNDA 487



 Score = 38.5 bits (88), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 9/181 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   K+ H+  +      +  V + L+  YA CG    +  VF+
Sbjct: 756 SVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFD 815

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN------VSPDDFTLATISKLSGE 133
            +  ++V  +N LI  Y  +    EALELF  M          + P++ T   I      
Sbjct: 816 QMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSH 875

Query: 134 IKDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ--RNVGSW 190
              ++ G+ L H +    G          L+ +  + G+  E   L + MP     V +W
Sbjct: 876 SGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAW 935

Query: 191 N 191
           +
Sbjct: 936 S 936


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 169/480 (35%), Positives = 266/480 (55%), Gaps = 7/480 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF-NSIQHKDVYLYNSLINGYVK 98
           KQ H+++L  G + +P+  TK ++        + +  VF N     D +L+N +I G   
Sbjct: 28  KQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGLSC 87

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
           +   + +L L+  M   +   + +T   + K    +        IH    K G+  D+  
Sbjct: 88  SDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYA 147

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM-K 217
            NSL++ Y   G F     LFD + + +  SWN  I G+  +G+  + +    +F +M +
Sbjct: 148 VNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALT---LFRKMPE 204

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
           + N  +WT MI+GYVQ G   EAL LF EMQ    + P+ VSL S L  CS L  L  GK
Sbjct: 205 KNNAISWTTMISGYVQAGMNKEALQLFHEMQ-NSNVPPDNVSLASALSACSQLGALEQGK 263

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            IH +A +     D  LC  LIDMY+KCG ++ A  VF++    K    W++++SGY  H
Sbjct: 264 WIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMK-TKSVQVWTALISGYAYH 322

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G G EA+  + +M  +G KP+ IT   VL+AC  +GL+ EG  ++N++   Y +KPT E 
Sbjct: 323 GLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEH 382

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             C+VD+LGRAG L+ A  FI+ MP++P+  IWG+L+ A  +H N E+ +   + LI+++
Sbjct: 383 YGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMD 442

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
             +   YV ++N++A  ++WD  AE R +M+++G+ K PGCS IS+ G TH F   D++H
Sbjct: 443 SNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSH 502



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 145/359 (40%), Gaps = 68/359 (18%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L  S  + + T    L+  +   + + T Q H+ I   G+  + +    LI +YA+ G  
Sbjct: 102 LCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNF 161

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVK-------------------------------NH 100
             + L+F+ IQ  D   +NS+I GYVK                                 
Sbjct: 162 KHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQA 221

Query: 101 GHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
           G N EAL+LF  M  SNV PD+ +LA+      ++  L  G  IH  + K    +D +L 
Sbjct: 222 GMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLC 281

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
             L+ MY KCG+  E L +F  M  ++V  W   ISG+A  G              + R 
Sbjct: 282 CVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHG--------------LGR- 326

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
                              EA+  FLEMQ    ++PN ++  +VL  CS    +  GK +
Sbjct: 327 -------------------EAISKFLEMQ-NMGVKPNAITFTAVLTACSYTGLVEEGKSV 366

Query: 280 HGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
                R   L   +     ++D+  + G L+ A R  +      +A+ W S++    +H
Sbjct: 367 FNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIH 425


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 172/526 (32%), Positives = 289/526 (54%), Gaps = 40/526 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC---GQPTQSQLVF 78
           T+   +   A    L L +Q HSQ +  G   +  V   LI  YA C   G    ++ +F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           + I   +V+ + ++I GYV+  G++E AL+LF  M  ++V P+ FT ++  K    +  L
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAAL 392

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            +G  +   ++K+GF     +ANSL+SMY + G+  +                       
Sbjct: 393 RIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDD----------------------- 429

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                      +R+ FD +  +N+ ++  +I+ Y +N + +EAL LF E++    +  + 
Sbjct: 430 -----------ARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE-DQGMGASA 477

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            +  S+L   +S+  +  G+QIH   I+  L  + S+CNALI MYS+CG+++ A +VFED
Sbjct: 478 FTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFED 537

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
              +++ I+W+SI++G+  HG   +A+ L++KM+  G +P+ +T + VLSAC   GL+NE
Sbjct: 538 ME-DRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNE 596

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G + + S+   + + P  E  AC+VD+LGR+G L  A+ FI +MP +    +W   + A 
Sbjct: 597 GWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
            +HGN E+   A K +I+ EP +P+ Y+ LSNLYAS  +WD V+ +R  MK++ L K  G
Sbjct: 657 RVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAG 716

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           CSW+ +  K H F V D +HP +  IY+ L +L + ++     P+L
Sbjct: 717 CSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNL 762



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 188/393 (47%), Gaps = 37/393 (9%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF  +  ++   +  +I   ++     EA++LF +M +S   PD FTL+ +      ++ 
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L +G  +H  +I+ G  +D  +   L++MY KC                           
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKC--------------------------- 319

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD-EALVLFLEMQLKDRIEP 255
              S D S+   +R++FDQ+   NV++WTAMI GYVQ G  D EAL LF  M L   I P
Sbjct: 320 ---SVDGSMCA-ARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVI-P 374

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N  +  S L  C++L  L  G+Q+   A++   +    + N+LI MY++ G +D AR+ F
Sbjct: 375 NHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAF 434

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D  F K+ I++++++  Y  +    EA+ L+N++   G      T   +LS     G I
Sbjct: 435 -DILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTI 493

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            +G +I+  VI +  +K    +C  ++ M  R G ++ A    + M      S W ++++
Sbjct: 494 GKGEQIHARVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVIS-WTSIIT 551

Query: 436 ASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSL 467
               HG  ++  +L +K L +    N   Y+++
Sbjct: 552 GFAKHGFATQALELFHKMLEEGVRPNEVTYIAV 584



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 174/385 (45%), Gaps = 46/385 (11%)

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           + N   ++A+    +M +    PD  T +   K     +  ++G L+H    +    +D 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           +  NSL+S+Y KCG++ +  ++F     R +GS                           
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIF-----RLMGS--------------------------- 129

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
             R++ +W+AM++ +  N     AL+ F++M +++   PN+    +    CS+   +S G
Sbjct: 130 -SRDLISWSAMVSCFANNNMGFRALLTFVDM-IENGYYPNEYCFAAATRACSTAEFVSVG 187

Query: 277 KQIHGFAIRK-ELNHDVSLCNALIDMYSKC-GSLDCARRVFEDSSFNKDAITWSSIVSGY 334
             I GF I+   L  DV +   LIDM+ K  G L  A +VFE     ++A+TW+ +++  
Sbjct: 188 DSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMP-ERNAVTWTLMITRL 246

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
              G   EA+ L+  M+  G +PD  T+ GV+SAC    L+  G ++++  I   R   T
Sbjct: 247 MQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAI---RHGLT 303

Query: 395 TEICA--CVVDMLGRA---GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            + C   C+++M  +    G +  A      + ++ +   W A+++  V  G  + + L 
Sbjct: 304 LDRCVGCCLINMYAKCSVDGSMCAARKIFDQI-LDHNVFSWTAMITGYVQKGGYDEEALD 362

Query: 450 YKSLIQLEPENPSNYVSLSNLYASS 474
               + L    P+++   S L A +
Sbjct: 363 LFRGMILTHVIPNHFTFSSTLKACA 387


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 179/540 (33%), Positives = 282/540 (52%), Gaps = 73/540 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  A  ++ K  +Q H  +L LG   + +V T LI+ YA  G+   +Q VF+  
Sbjct: 77  TFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRS 136

Query: 82  QHKDVYLY-------------------------------NSLINGYVKNHGHNEALELFS 110
            H+DV  Y                               N++I+GY +   + +ALELF 
Sbjct: 137 SHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFK 196

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M  +NV PD+ T+AT+     +   + +G  +H      GF  ++ + N+L+ +Y KCG
Sbjct: 197 EMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCG 256

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
           +      L +                                   +  ++V +W  +I G
Sbjct: 257 EVETACELLE----------------------------------GLSNKDVISWNTLIGG 282

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           Y       EAL+LF EM L+    PN V+++S+LP C+ L  +  G+ IH + I K+L  
Sbjct: 283 YTHMNLYKEALLLFQEM-LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY-IDKKLKG 340

Query: 291 DV-----SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
            V     SL  +LIDMY+KCG +D A +V + S+FN+   TW++++ G+ +HG+ + A  
Sbjct: 341 VVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFD 400

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           ++++M   G +PD IT VG+LSAC  SG+++ G  I+ S+   Y I P  E   C++D+L
Sbjct: 401 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLL 460

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
           G +G    A + I TMP+EP   IW +L+ A  +HGN E+ +   K LI++EPENP +YV
Sbjct: 461 GHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYV 520

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLKKS-PGCSWISIHGKTHCFSVADKAHPCSVSIY 524
            LSN+YA++ +W+ V ++RT++ D+G+KK  PGCS I I    H F + DK HP +  IY
Sbjct: 521 LLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIY 580



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 199/370 (53%), Gaps = 8/370 (2%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF +I   +  ++N +  G+  +     AL+L+  M    + P+ FT   + K   + K 
Sbjct: 31  VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
              G  IHG  +K+GF +D+ +  SL+SMY + G+  +   +FD    R+V S+   I+G
Sbjct: 91  FKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITG 150

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +AS G    +  ++++FD++  ++V +W AMI+GY + G+  +AL LF EM +K  ++P+
Sbjct: 151 YASRG---YIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEM-MKTNVKPD 206

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + ++ +V+  C+    +  G+Q+H +        ++ + NALID+YSKCG ++ A  + E
Sbjct: 207 ESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLE 266

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
             S NKD I+W++++ GY       EA+LL+ +M+  G  P+ +T++ +L AC   G I+
Sbjct: 267 GLS-NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 325

Query: 377 EGLEIYNSVINTYR---IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            G  I+  +    +   +   + +   ++DM  + G +D A     +     S S W A+
Sbjct: 326 IGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAM 385

Query: 434 VSASVMHGNS 443
           +    MHG +
Sbjct: 386 IFGFAMHGRA 395



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 137/328 (41%), Gaps = 47/328 (14%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            +T+   +   A   S++L +Q HS I   G  SN  +   LI  Y+ CG+   +  +  
Sbjct: 207 ESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLE 266

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            + +KDV  +N+LI GY   + + EAL LF  M  S  +P+D T+ +I      +  +++
Sbjct: 267 GLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 326

Query: 140 GMLIHGLSIK--IGFVVDVI--LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           G  IH    K   G VV     L  SL+ MY KCG         D  PQ           
Sbjct: 327 GRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGD-------IDAAPQ----------- 368

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                      V     F+    R++  W AMI G+  +G  + A  +F  M+ K+ IEP
Sbjct: 369 -----------VSDSSAFN----RSLSTWNAMIFGFAMHGRANAAFDIFSRMR-KNGIEP 412

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           + ++ V +L  CS    L  G+ I       + I  +L H       +ID+    G    
Sbjct: 413 DDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEH----YGCMIDLLGHSGLFKE 468

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           A  +        D + W S++    +HG
Sbjct: 469 AEEMINTMPMEPDGVIWCSLLKACKIHG 496


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 168/516 (32%), Positives = 277/516 (53%), Gaps = 37/516 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A+   L   K  H Q++  G   +  +   L+  YA CG    +  VF  I  +DV
Sbjct: 198 LKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDV 257

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             + +LI G+V   G+   L +F+ M     +P+ +T  +I +    + D+++G  +H  
Sbjct: 258 VSWTALITGFVA-EGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQ 316

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            +K     +  +  +L+ MY K        N F E                         
Sbjct: 317 IVKNSLDGNDFVGTALVDMYAK--------NRFLE------------------------- 343

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             +  +F+++ +R+++AWT ++ GY Q+G  ++A+  F++MQ ++ ++PN+ +L S L  
Sbjct: 344 -DAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ-REGVKPNEFTLASSLSG 401

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           CS +  L  G+Q+H  AI+   + D+ + +AL+DMY+KCG ++ A  VF D   ++D ++
Sbjct: 402 CSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVF-DGLVSRDTVS 460

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++I+ GY  HG+G +A+  +  M+  G+ PD +T +GVLSAC   GLI EG + +NS+ 
Sbjct: 461 WNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLS 520

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             Y I PT E  AC+VD+LGRAG+      FI+ M +  +  IW  ++ A  MHGN E  
Sbjct: 521 KIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFG 580

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
           + A   L +LEPE  SNY+ LSN++A+   WD V  +R +M  RG+KK PGCSW+ ++G+
Sbjct: 581 ERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQ 640

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
            H F   D +HP    I+  L DL   +     +P+
Sbjct: 641 VHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPN 676



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 202/444 (45%), Gaps = 44/444 (9%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R+  + K+   +++  G   +  + + L+  Y  C     ++ V   +  +DV  +N  +
Sbjct: 3   RAKYILKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKL 62

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +     +   EA++LF  M ++ +  + F  A++   +  + D + G  IH    K GF 
Sbjct: 63  SSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFE 122

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            D++++N+ ++MY+K          F  M   N+ S N  +SG     D     +  R+ 
Sbjct: 123 SDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFC---DTETCDQGPRIL 179

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
            Q+          ++ G+                      EPN  + +S+L TC+S   L
Sbjct: 180 IQL----------LVEGF----------------------EPNMYTFISILKTCASKGDL 207

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           + GK IHG  I+  +N D  L N+L+++Y+KCGS + A +VF +    +D ++W+++++G
Sbjct: 208 NEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP-ERDVVSWTALITG 266

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           +   G G   + ++N+M+  G  P++ T + +L +C     ++ G +++  ++    +  
Sbjct: 267 FVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN-SLDG 324

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
              +   +VDM  +   L+ A + I    ++     W  +V+     G  E    A K  
Sbjct: 325 NDFVGTALVDMYAKNRFLEDA-ETIFNRLIKRDLFAWTVIVAGYAQDGQGEK---AVKCF 380

Query: 454 IQLEPE--NPSNYVSLSNLYASSR 475
           IQ++ E   P+ +   S+L   SR
Sbjct: 381 IQMQREGVKPNEFTLASSLSGCSR 404



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 12/206 (5%)

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K+I    I+  +  D  L ++L+++Y KC SL CAR+V E+    +D   W+  +S    
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPI-QDVQQWNQKLSSANS 67

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
                EAV L+  M     + +      ++SA    G  + G  I+  V   Y  +    
Sbjct: 68  PYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCK-YGFESDIL 126

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG--NSEMQDLAYKSLI 454
           I    V M  +   ++    F K M +E   S        +++ G  ++E  D   + LI
Sbjct: 127 ISNAFVTMYMKTQSVENGWQFFKAMMIENLAS------RNNLLSGFCDTETCDQGPRILI 180

Query: 455 QL--EPENPSNYVSLSNLYASSRRWD 478
           QL  E   P+ Y  +S L   + + D
Sbjct: 181 QLLVEGFEPNMYTFISILKTCASKGD 206


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 164/487 (33%), Positives = 272/487 (55%), Gaps = 9/487 (1%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T +IT Y        ++   N    K    +N++I+GY     + EA E+F  M  S + 
Sbjct: 227 TTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQ 286

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKI--GFVVDVILA--NSLMSMYVKCGKFSE 174
            D+FT  ++  +        +G  +H   +K       DV +   N+L++ Y KCGK   
Sbjct: 287 LDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDI 346

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
              +F++MP+R++ SWN+ +SG+    +   +  ++  F++M  +N+ +W  MI+G  Q 
Sbjct: 347 AQEIFNKMPERDLVSWNIILSGYV---NVRCMDEAKSFFNEMPEKNILSWIIMISGLAQI 403

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G  +EAL  F  M+L+   EP   +    + +CS L  L  G+Q+H   +R      +S 
Sbjct: 404 GFAEEALKFFNRMKLQG-FEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSA 462

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            NALI MY++CG +D A  +F +     DAI+W+++++  G HG+G +A+ L+ +M+  G
Sbjct: 463 GNALITMYARCGVVDAAHCLFINMPC-VDAISWNAMIAALGQHGQGTQAIELFEEMLKEG 521

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
             PD I+ + V+SAC  +GL+ EG + ++S+ N Y + P  E  A ++D+L RAG+   A
Sbjct: 522 ILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEA 581

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            + +++MP EP   IW AL++   +HGN ++   A + L +L+P++   YV LSN+YA +
Sbjct: 582 KEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVA 641

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
            +W+ +A++R +M+DRG+KK PGCSWI +  K H F V D  HP    IY  L+ L+L M
Sbjct: 642 GQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEM 701

Query: 535 RGAAASP 541
           R     P
Sbjct: 702 RKIGYVP 708



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 195/458 (42%), Gaps = 108/458 (23%)

Query: 59  TKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           T LI AY+  G    S+ +F+   +  +D   YN++I  Y  NH  + A+ELF +M   N
Sbjct: 83  TTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDN 142

Query: 117 VSPDDFT-------LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
             PD++T       LA +++     + L+  ++  G     GFV  V+  N+L+S YVKC
Sbjct: 143 FRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSG----TGFVTSVL--NALISSYVKC 196

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
                                    +   S+   SL+  +R++FD+M  R+  +WT +I 
Sbjct: 197 -------------------------AASPSAQSSSLMAEARKLFDEMPNRDELSWTTIIT 231

Query: 230 GYVQNGDLD-------------------------------EALVLFLEMQLKDRIEPNKV 258
           GYV+N DLD                               EA  +F +M +  +I+ ++ 
Sbjct: 232 GYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKM-IMSKIQLDEF 290

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELN--HDVSLC--NALIDMYSKCGSLDCARRV 314
           +  SV+  C++      GK++H + ++   N   DV++   NALI  Y KCG +D A+ +
Sbjct: 291 TFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEI 350

Query: 315 F-------------------------EDSSF-----NKDAITWSSIVSGYGLHGKGHEAV 344
           F                         E  SF      K+ ++W  ++SG    G   EA+
Sbjct: 351 FNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEAL 410

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
             +N+M   G +P      G + +C   G +  G +++  V+  Y  + +      ++ M
Sbjct: 411 KFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVR-YGYESSLSAGNALITM 469

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
             R G +D A      MP   + S W A+++A   HG 
Sbjct: 470 YARCGVVDAAHCLFINMPCVDAIS-WNAMIAALGQHGQ 506



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 154/364 (42%), Gaps = 58/364 (15%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H   I  GF     + N L+ +Y K  K +    LFDE+PQ ++ +    I+ ++++GD
Sbjct: 35  VHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGD 94

Query: 203 FSLVVRSRRVFDQ--MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
             L   SR++F    +  R+   + AMI  Y  N D   A+ LF +MQ +D   P+  + 
Sbjct: 95  LKL---SRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQ-RDNFRPDNYTF 150

Query: 261 VSVLPTCSSLIGLSGG-KQIHGFAIRKELNHDVSLCNALIDMYSKCGS---------LDC 310
            SVL   + +       +Q+H   ++       S+ NALI  Y KC +         +  
Sbjct: 151 TSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAE 210

Query: 311 ARRVFEDSSFNKDAITWSSIVSGY--------------------------GLHGKGH--- 341
           AR++F++   N+D ++W++I++GY                           + G  H   
Sbjct: 211 ARKLFDEMP-NRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGL 269

Query: 342 --EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA  ++ KM+    + D  T   V+S C  +G    G E++   + T    P  ++  
Sbjct: 270 YLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTV-ANPAPDVAM 328

Query: 400 CV----VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            V    +    + G++D A +    MP E     W  ++S  V   N    D A KS   
Sbjct: 329 PVNNALITFYWKCGKVDIAQEIFNKMP-ERDLVSWNIILSGYV---NVRCMDEA-KSFFN 383

Query: 456 LEPE 459
             PE
Sbjct: 384 EMPE 387



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 137/356 (38%), Gaps = 77/356 (21%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPF------VSTKLITAYALCGQPTQSQ 75
           T    + V A     +L K+ H+  L    ++NP       V+  LIT Y  CG+   +Q
Sbjct: 291 TFTSVISVCANAGCFRLGKEMHAYFLKT--VANPAPDVAMPVNNALITFYWKCGKVDIAQ 348

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHN-------------------------------E 104
            +FN +  +D+  +N +++GYV     +                               E
Sbjct: 349 EIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEE 408

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           AL+ F+ M      P D+  A        +  L  G  +H   ++ G+   +   N+L++
Sbjct: 409 ALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALIT 468

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MY +CG       LF  MP  +  SWN                                 
Sbjct: 469 MYARCGVVDAAHCLFINMPCVDAISWN--------------------------------- 495

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL--SGGKQIHGF 282
            AMI    Q+G   +A+ LF EM LK+ I P+++S ++V+  CS   GL   G K     
Sbjct: 496 -AMIAALGQHGQGTQAIELFEEM-LKEGILPDRISFLTVISACSH-AGLVKEGRKYFDSM 552

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
                +N D      +ID+  + G    A+ V E   F   A  W ++++G  +HG
Sbjct: 553 HNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHG 608



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 2/207 (0%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SLK  +Q H+Q++  G+ S+      LIT YA CG    +  +F ++   D   +N++I 
Sbjct: 440 SLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIA 499

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFV 153
              ++    +A+ELF  M    + PD  +  T+         +  G      +    G  
Sbjct: 500 ALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVN 559

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRV 212
            D      ++ +  + GKFSE   + + MP +     W   ++G    G+  L + +   
Sbjct: 560 PDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAER 619

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDE 239
             ++K ++   +  + N Y   G  ++
Sbjct: 620 LFELKPQHDGTYVLLSNMYAVAGQWND 646


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  310 bits (795), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 164/502 (32%), Positives = 285/502 (56%), Gaps = 14/502 (2%)

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           H+ +    T LI+  A  G    +QL+ +    +DV  + SLI  Y + +   EA+  F 
Sbjct: 169 HVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFK 228

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M    ++PD+ T+  +     ++KDL +G  +H L  + G      L  +L+ MY KCG
Sbjct: 229 TMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCG 288

Query: 171 KFSECLNLFDEM-----PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
            F     +FD +     PQ    SWN  I G+   G   +   +R +FD+M+ R++  + 
Sbjct: 289 DFGHAQQVFDALGRGPRPQ----SWNAIIDGYCKHGHVDV---ARSLFDEMEVRDIITFN 341

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           +M+ GY+ +G L EAL+LF+ M+  D +  +  ++V++L  C+SL  L  G+ +H    +
Sbjct: 342 SMMTGYIHSGQLREALLLFMSMRRHD-LRVDNFTVVNLLTACASLGALQQGRALHACIEQ 400

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
           + +  D+ L  AL+DMY KCG +D A  VF+     +D  TW+++++G   +G G  A+ 
Sbjct: 401 RLVEADIYLGTALLDMYMKCGRVDEATIVFQRMG-KRDVHTWTAMIAGLAFNGMGKAALE 459

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
            + +M C G +P+ ++ + VL+AC  S L+NEG   ++ +   Y I P  E   C++D+L
Sbjct: 460 HFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLL 519

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
           GR+G LD A+D +KTMP++P+  IW +++SA  +H + ++   A + L++LEP+    YV
Sbjct: 520 GRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYV 579

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYE 525
            L N+Y  SR+W+  +++R +M++R +KK+ G S I++ G+ H F V+DK+HP  + I  
Sbjct: 580 QLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIA 639

Query: 526 MLDDLILIMRGAAASPHLGKMT 547
           ML+++   ++    SP   ++T
Sbjct: 640 MLEEISHRLKSLGYSPLTSQIT 661



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 211/453 (46%), Gaps = 51/453 (11%)

Query: 32  THRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKD 85
           T R+++   + H+++ + GH+  +P  +  L+ +   C +P    L     +F+ +    
Sbjct: 8   TPRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PS 66

Query: 86  VYLYNSLINGYVK--NHGHNEALELFSNMYYSNVSPDDFTLATISK---LSGEIKDLNVG 140
            +L+++ +    +  +  H   L LF  M  + V PD FT   + K    S     L + 
Sbjct: 67  TFLFDTALRACSRAGSDPHRPFL-LFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLC 125

Query: 141 MLIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
            ++H   ++         ++NSL+ MY++ G  ++    FDE+  ++  +W + ISG A 
Sbjct: 126 TMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAK 185

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
            G   ++  ++ +  Q   R+V +WT++I  Y +     EA+  F  M L   I P++V+
Sbjct: 186 MG---MLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM-LSHGIAPDEVT 241

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE--- 316
           +++VL  C+ L  L  G+ +H     K +    +L  ALIDMY+KCG    A++VF+   
Sbjct: 242 VIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALG 301

Query: 317 ----DSSFN------------------------KDAITWSSIVSGYGLHGKGHEAVLLYN 348
                 S+N                        +D IT++S+++GY   G+  EA+LL+ 
Sbjct: 302 RGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFM 361

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
            M     + D  T+V +L+AC   G + +G  ++ + I    ++    +   ++DM  + 
Sbjct: 362 SMRRHDLRVDNFTVVNLLTACASLGALQQGRALH-ACIEQRLVEADIYLGTALLDMYMKC 420

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           G++D A    + M  +     W A+++    +G
Sbjct: 421 GRVDEATIVFQRMG-KRDVHTWTAMIAGLAFNG 452



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 140/349 (40%), Gaps = 68/349 (19%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A  + L+L +  H  +   G  ++  +   LI  YA CG    +Q VF+++
Sbjct: 241 TVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDAL 300

Query: 82  --------------------------------QHKDVYLYNSLINGYVKNHGHNEALELF 109
                                           + +D+  +NS++ GY+ +    EAL LF
Sbjct: 301 GRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLF 360

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
            +M   ++  D+FT+  +      +  L  G  +H    +     D+ L  +L+ MY+KC
Sbjct: 361 MSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKC 420

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           G+  E   +F  M +R+V +W                                  TAMI 
Sbjct: 421 GRVDEATIVFQRMGKRDVHTW----------------------------------TAMIA 446

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK-QIHGFAIRKEL 288
           G   NG    AL  F +M+  D  +PN VS ++VL  CS    L+ G+       I   +
Sbjct: 447 GLAFNGMGKAALEHFYQMRC-DGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNI 505

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +  +     +ID+  + G LD A  + +      +A+ W+SI+S   +H
Sbjct: 506 HPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVH 554


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 164/502 (32%), Positives = 285/502 (56%), Gaps = 14/502 (2%)

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           H+ +    T LI+  A  G    +QL+ +    +DV  + SLI  Y + +   EA+  F 
Sbjct: 169 HVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFK 228

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M    ++PD+ T+  +     ++KDL +G  +H L  + G      L  +L+ MY KCG
Sbjct: 229 TMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCG 288

Query: 171 KFSECLNLFDEM-----PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
            F     +FD +     PQ    SWN  I G+   G   +   +R +FD+M+ R++  + 
Sbjct: 289 DFGHAQQVFDALGRGPRPQ----SWNAIIDGYCKHGHVDV---ARSLFDEMEVRDIITFN 341

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           +M+ GY+ +G L EAL+LF+ M+  D +  +  ++V++L  C+SL  L  G+ +H    +
Sbjct: 342 SMMTGYIHSGQLREALLLFMSMRRHD-LRVDNFTVVNLLTACASLGALQQGRALHACIEQ 400

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
           + +  D+ L  AL+DMY KCG +D A  VF+     +D  TW+++++G   +G G  A+ 
Sbjct: 401 RLVEADIYLGTALLDMYMKCGRVDEATIVFQRMG-KRDVHTWTAMIAGLAFNGMGKAALE 459

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
            + +M C G +P+ ++ + VL+AC  S L+NEG   ++ +   Y I P  E   C++D+L
Sbjct: 460 HFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLL 519

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
           GR+G LD A+D +KTMP++P+  IW +++SA  +H + ++   A + L++LEP+    YV
Sbjct: 520 GRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYV 579

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYE 525
            L N+Y  SR+W+  +++R +M++R +KK+ G S I++ G+ H F V+DK+HP  + I  
Sbjct: 580 QLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIA 639

Query: 526 MLDDLILIMRGAAASPHLGKMT 547
           ML+++   ++    SP   ++T
Sbjct: 640 MLEEISHRLKSLGYSPLTSQIT 661



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 211/453 (46%), Gaps = 51/453 (11%)

Query: 32  THRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQL-----VFNSIQHKD 85
           T R+++   + H+++ + GH+  +P  +  L+ +   C +P    L     +F+ +    
Sbjct: 8   TPRTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMP-PS 66

Query: 86  VYLYNSLINGYVK--NHGHNEALELFSNMYYSNVSPDDFTLATISK---LSGEIKDLNVG 140
            +L+++ +    +  +  H   L LF  M  + V PD FT   + K    S     L + 
Sbjct: 67  TFLFDTALRACSRAGSDPHRPFL-LFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLC 125

Query: 141 MLIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
            ++H   ++         ++NSL+ MY++ G  ++    FDE+  ++  +W + ISG A 
Sbjct: 126 TMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAK 185

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
            G   ++  ++ +  Q   R+V +WT++I  Y +     EA+  F  M L   I P++V+
Sbjct: 186 MG---MLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM-LSHGIAPDEVT 241

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE--- 316
           +++VL  C+ L  L  G+ +H     K +    +L  ALIDMY+KCG    A++VF+   
Sbjct: 242 VIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALG 301

Query: 317 ----DSSFN------------------------KDAITWSSIVSGYGLHGKGHEAVLLYN 348
                 S+N                        +D IT++S+++GY   G+  EA+LL+ 
Sbjct: 302 RGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFM 361

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
            M     + D  T+V +L+AC   G + +G  ++ + I    ++    +   ++DM  + 
Sbjct: 362 SMRRHDLRVDNFTVVNLLTACASLGALQQGRALH-ACIEQRLVEADIYLGTALLDMYMKC 420

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           G++D A    + M  +     W A+++    +G
Sbjct: 421 GRVDEATIVFQRMG-KRDVHTWTAMIAGLAFNG 452



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 140/349 (40%), Gaps = 68/349 (19%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A  + L+L +  H  +   G  ++  +   LI  YA CG    +Q VF+++
Sbjct: 241 TVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDAL 300

Query: 82  --------------------------------QHKDVYLYNSLINGYVKNHGHNEALELF 109
                                           + +D+  +NS++ GY+ +    EAL LF
Sbjct: 301 GRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLF 360

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
            +M   ++  D+FT+  +      +  L  G  +H    +     D+ L  +L+ MY+KC
Sbjct: 361 MSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKC 420

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           G+  E   +F  M +R+V +W                                  TAMI 
Sbjct: 421 GRVDEATIVFQRMGKRDVHTW----------------------------------TAMIA 446

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK-QIHGFAIRKEL 288
           G   NG    AL  F +M+  D  +PN VS ++VL  CS    L+ G+       I   +
Sbjct: 447 GLAFNGMGKAALEHFYQMRC-DGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNI 505

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +  +     +ID+  + G LD A  + +      +A+ W+SI+S   +H
Sbjct: 506 HPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVH 554


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 182/585 (31%), Positives = 309/585 (52%), Gaps = 72/585 (12%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           +YT+  V   LQV A    L   ++ H+ +L  G   N      L+  YA CG    +  
Sbjct: 265 SYTTVGV---LQVCAELAQLNHGRELHAALLKCGTEFN-IQCNALLVMYARCGWVDSALR 320

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF  I  KD   +NS+++ YV+N  + EA++ F  M  +  +PD   + ++    G +  
Sbjct: 321 VFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGR 380

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMY-----VKCG--------------------- 170
           L  G  +H  ++K     D+ +AN+LM MY     V+C                      
Sbjct: 381 LINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIAC 440

Query: 171 -----KFSECLNLFDEMPQRNV-------GSWNVRISGHAS-------------SGDFSL 205
                ++SE +  F    +  +       GS     SG  S             +G   L
Sbjct: 441 YAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDL 500

Query: 206 VVRSR---------------RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           ++++R                +F+ + ++++  WT+M+N + +NG L EA+ LF +M L 
Sbjct: 501 ILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKM-LN 559

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             I+P+ V+LV +L   + L  L+ GK+IHGF IR +   + ++ ++L+DMYS CGS++ 
Sbjct: 560 AGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNY 619

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           A +VF+++   KD + W+++++  G+HG G +A+ ++ +M+  G  PD ++ + +L AC 
Sbjct: 620 ALKVFDEAKC-KDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACS 678

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
            S L++EG    + +++ Y+++P  E  ACVVD+LGR+GQ + A  FIK+MP+EP   +W
Sbjct: 679 HSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVW 738

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
            AL+ A  +H N E+  +A   L++LEP+NP NYV +SN++A   +W+ V E+RT M ++
Sbjct: 739 CALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQ 798

Query: 491 GLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           GL+K P CSWI I    H F+  D +H  S +I+  L ++   +R
Sbjct: 799 GLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLR 843



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 230/506 (45%), Gaps = 86/506 (16%)

Query: 3   LSSARNTFALVTSRNYTSATVQHF---LQVSATHRSLKLTKQSHSQILSLGHISNP---F 56
           L  A    A  ++R        H+   L + A  R++   +Q H+  ++ G + +    F
Sbjct: 35  LREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGF 94

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           ++TKL+  Y  CG+   +  +F+ +  + V+ +N+LI   + + G  EA+ ++  M  S 
Sbjct: 95  LATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASE 154

Query: 117 ----VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
                +PD  TLA++ K  G   D   G  +HGL++K G     ++AN+L+ MY KCG  
Sbjct: 155 PVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLL 214

Query: 173 SECLNLFDEMPQ-RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
              L +F+ M   R+V SWN  IS                                  G 
Sbjct: 215 DSALRVFEWMRDGRDVASWNSAIS----------------------------------GC 240

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
           VQNG   EAL LF  MQ  D    N  + V VL  C+ L  L+ G+++H   ++     +
Sbjct: 241 VQNGMFLEALDLFRRMQ-SDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN 299

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           +  CNAL+ MY++CG +D A RVF +   +KD I+W+S++S Y  +    EA+  + +MV
Sbjct: 300 IQ-CNALLVMYARCGWVDSALRVFREIG-DKDYISWNSMLSCYVQNRLYAEAIDFFGEMV 357

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G  PD   IV +LSA G  G +  G E++   +   R+    +I   ++DM       
Sbjct: 358 QNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQ-RLDSDLQIANTLMDM------- 409

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
                +IK   VE S  ++                        ++  ++  ++ ++   Y
Sbjct: 410 -----YIKCYSVECSARVFD-----------------------RMRIKDHVSWTTIIACY 441

Query: 472 ASSRRW-DAVAELRTMMKDRGLKKSP 496
           A S R+ +A+ + RT  K+ G+K  P
Sbjct: 442 AQSSRYSEAIGKFRTAQKE-GIKVDP 466



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 166/354 (46%), Gaps = 40/354 (11%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+        +   + H   +  G   +  V+  L+  YA CG    +  VF  +
Sbjct: 165 TLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWM 224

Query: 82  QH-KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +  +DV  +NS I+G V+N    EAL+LF  M     S + +T   + ++  E+  LN G
Sbjct: 225 RDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHG 284

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             +H   +K G   + I  N+L+ MY +CG     L +F E+  ++  SWN         
Sbjct: 285 RELHAALLKCGTEFN-IQCNALLVMYARCGWVDSALRVFREIGDKDYISWN--------- 334

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                    +M++ YVQN    EA+  F EM +++   P+   +
Sbjct: 335 -------------------------SMLSCYVQNRLYAEAIDFFGEM-VQNGFNPDHACI 368

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           VS+L     L  L  G+++H +A+++ L+ D+ + N L+DMY KC S++C+ RVF D   
Sbjct: 369 VSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVF-DRMR 427

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
            KD ++W++I++ Y    +  EA+  +      G K D + +  +L AC  SGL
Sbjct: 428 IKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEAC--SGL 479



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 9/216 (4%)

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-ELNHD 291
           ++GDL EAL        + R  P       VL   +    +S G+Q+H  A+    L  D
Sbjct: 31  KDGDLREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDD 90

Query: 292 VS--LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            +  L   L+ MY KCG L  A R+F D    +   +W++++      G   EAV +Y  
Sbjct: 91  DAGFLATKLLFMYGKCGRLPDAHRLF-DGMPARTVFSWNALIGACLSSGGAGEAVGVYRA 149

Query: 350 MVC----LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           M       G+ PD  T+  VL ACG  G    G E++   + +  +  +T +   +V M 
Sbjct: 150 MRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKS-GLDRSTLVANALVGMY 208

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
            + G LD AL   + M      + W + +S  V +G
Sbjct: 209 AKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNG 244


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/451 (35%), Positives = 263/451 (58%), Gaps = 12/451 (2%)

Query: 87  YLYNSLING----YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
           +++N+LI       V+N     AL L+  M    V PD   L T   L   I   + G  
Sbjct: 25  FVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPD---LHTFPFLLQSINTPHRGRQ 81

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H   + +G   D  +  SL++MY  CG  +     FDE+ Q ++ SWN  I  +A +G 
Sbjct: 82  LHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAG- 140

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD--RIEPNKVSL 260
             ++  +R++FDQM  +NV +W+ MI+GYV  G+   AL LF  +Q  +  ++ PN+ ++
Sbjct: 141 --MIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTM 198

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            SVL  C+ L  L  GK +H +  +  +  DV L  +LIDMY+KCGS++ A+ +F++   
Sbjct: 199 SSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGP 258

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            KD + WS++++ + +HG   E + L+ +MV  G +P+ +T V VL AC   GL++EG E
Sbjct: 259 EKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNE 318

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            +  ++N Y + P  +   C+VD+  RAG+++ A + +K+MP+EP   IWGAL++ + +H
Sbjct: 319 YFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIH 378

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
           G+ E  ++A   L++L+P N S YV LSN+YA   RW  V  LR +M+ RG+KK PGCS 
Sbjct: 379 GDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSL 438

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           + + G    F   D +HP  +++Y MLD+++
Sbjct: 439 VEVDGVIREFFAGDNSHPELLNLYVMLDEIM 469



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 154/358 (43%), Gaps = 84/358 (23%)

Query: 22  TVQHFLQ-VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           T    LQ ++  HR     +Q H+QIL LG  ++PFV T LI  Y+ CG PT ++  F+ 
Sbjct: 65  TFPFLLQSINTPHRG----RQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDE 120

Query: 81  IQHKDVYLYNS-------------------------------LINGYVKNHGHNEALELF 109
           I   D+  +N+                               +I+GYV    +  AL LF
Sbjct: 121 ITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLF 180

Query: 110 SNMYY---SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
            ++     S + P++FT++++      +  L  G  +H    K G  +DV+L  SL+ MY
Sbjct: 181 RSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMY 240

Query: 167 VKCGKFSECLNLFDEM-PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
            KCG       +FD + P+++V                                   AW+
Sbjct: 241 AKCGSIERAKCIFDNLGPEKDV----------------------------------MAWS 266

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG-----KQIH 280
           AMI  +  +G  +E L LF  M + D + PN V+ V+VL  C     +S G     + ++
Sbjct: 267 AMITAFSMHGLSEECLELFARM-VNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMN 325

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
            + +   + H       ++D+YS+ G ++ A  V +      D + W ++++G  +HG
Sbjct: 326 EYGVSPMIQH----YGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHG 379


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 181/579 (31%), Positives = 300/579 (51%), Gaps = 72/579 (12%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SL+L K  H+QI+  G  ++ FVST L+  YA  G    S  VFN +   +   +N++I+
Sbjct: 236 SLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMIS 295

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G   N  H EA +LF  M     +P+ +TL ++SK  G++ D+N+G  +   + ++G   
Sbjct: 296 GCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEG 355

Query: 155 DVILA---------------------------------NSLMSMYVKCGKFSECLNLFDE 181
           +V++                                  N+++S Y + G   E L L+ +
Sbjct: 356 NVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQ 415

Query: 182 MPQRNVGS-------------------WNVRISGHASSGDFSLVVRS------------- 209
           M Q  + S                   +   + G        L+V S             
Sbjct: 416 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 475

Query: 210 -----RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
                R+VFD+M+ R++ +WT ++  Y Q+   +EAL  F  M+ ++   PN+ +  SVL
Sbjct: 476 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMR-EEGFAPNQFTFSSVL 534

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            +C+SL  L  G+Q+HG   +  L+ +  + +ALIDMY+KCGS+  A +VF+  S N D 
Sbjct: 535 ISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-NPDI 593

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           ++W++I+SGY  HG   +A+ L+ +M   G K + +T++ VL AC   G++ EGL  +  
Sbjct: 594 VSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQ 653

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           + + Y + P  E  AC++D+LGR G+LD A++FI+ MP+EP+  +W  L+    +HGN E
Sbjct: 654 MEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVE 713

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           + ++A + ++ + PE  + YV LSN Y  +  ++    LR +MKD+G+KK PG SWIS+ 
Sbjct: 714 LGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 773

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           G+ H F   D+ HP    IY  L++L   ++     P L
Sbjct: 774 GRVHKFYSGDQQHPQKKEIYVKLEELREKIKAMGYVPDL 812



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 188/461 (40%), Gaps = 53/461 (11%)

Query: 15  SRNYTSATVQHFLQV---SATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT-------A 64
           S  Y    VQ  + V    A   S++  K  H  +L      + F    L+         
Sbjct: 110 SETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLK-----SNFEDKDLMVLFNHAAHV 164

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y+ C +   +  VF+ +  ++V+ +  +I G  ++    +  + F  M  S + PD F  
Sbjct: 165 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 224

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           + I +    +  L +G ++H   +  GF   + ++ SL++MY K G   +   +F+ M +
Sbjct: 225 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE 284

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
            N  SWN  ISG  S                                  NG   EA  LF
Sbjct: 285 HNQVSWNAMISGCTS----------------------------------NGLHLEAFDLF 310

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
           + M+      PN  +LVSV      L+ ++ GK++   A    +  +V +  ALIDMYSK
Sbjct: 311 VRMK-NGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSK 369

Query: 305 CGSLDCARRVFEDSSFNKDAIT-WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           CGSL  AR VF+ +  N    T W++++SGY   G   EA+ LY +M   G   D+ T  
Sbjct: 370 CGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYC 429

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            V +A   S  +  G  ++  V+          +   + D   + G L+        M  
Sbjct: 430 SVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRME- 488

Query: 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           E     W  LV+A       E + LA   L++ E   P+ +
Sbjct: 489 ERDIVSWTTLVTAYSQSSLGE-EALATFCLMREEGFAPNQF 528



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 137/280 (48%), Gaps = 12/280 (4%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VFD+M +RNV++WT MI G  ++G   +    F EM L   I P+K +  +++ +C  L 
Sbjct: 177 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEM-LNSGILPDKFAYSAIIQSCIGLD 235

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  GK +H   + +     + +  +L++MY+K GS++ +  VF   +   + ++W++++
Sbjct: 236 SLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMT-EHNQVSWNAMI 294

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           SG   +G   EA  L+ +M      P++ T+V V  A G+   +N G E+ N   +   I
Sbjct: 295 SGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCA-SELGI 353

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSEMQDLAY 450
           +    +   ++DM  + G L  A     T  +    +  W A++S     G S+      
Sbjct: 354 EGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQ------ 407

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
              ++L  +   N ++ S+LY     ++A+A  +++   R
Sbjct: 408 -EALELYVQMCQNGIT-SDLYTYCSVFNAIAASKSLQFGR 445


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 187/591 (31%), Positives = 292/591 (49%), Gaps = 69/591 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L V A+   L L  Q H   +  G   +  V+  L+  Y+ C     ++ +F+
Sbjct: 159 SVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFD 218

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           ++   D+  +N +I+GYV+N    EA  LF  M  + + PD  T A+      E+  L  
Sbjct: 219 TLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKH 278

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKC------------------------------ 169
              IHG  I+   V+DV L ++L+ +Y KC                              
Sbjct: 279 CKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVL 338

Query: 170 -GKFSECLNLFDEMPQRNVGSWNVRISG------------------------------HA 198
            GK  E L  F  + Q  +   +V  S                               H 
Sbjct: 339 NGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHV 398

Query: 199 SSGDFSLVVRSRR------VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            S    +  +  R      VF+++  ++   W +MI    QNG   EA+ LF +M ++  
Sbjct: 399 GSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEG- 457

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
              + VS+   L  C++L  L  GK+IHG  I+  L  D+   ++LIDMY+KCG+L+ +R
Sbjct: 458 TRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSR 517

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           RVF D    K+ ++W+SI+S YG HG   E + L+++M+  G +PD +T +G++SACG +
Sbjct: 518 RVF-DRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHA 576

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           G ++EG+  Y+ +   Y I    E  ACV DM GRAG+L  A + I +MP  P   +WG 
Sbjct: 577 GQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGT 636

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
           L+ A  +HGN E+ ++A K L  L+P N   YV L+N+ A + +W  V ++R++MK+RG+
Sbjct: 637 LLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGV 696

Query: 493 KKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           +K PG SWI ++  TH F  AD +HP +  IY +LD L+L ++     P L
Sbjct: 697 RKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYVPQL 747



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/421 (28%), Positives = 213/421 (50%), Gaps = 40/421 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  + ++     +S+K+ K  H  +  +G   + FV + LI  YA  G  + +Q +F++I
Sbjct: 60  TFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD  L+N ++NGYVKN     A+++F  M +S + P+  T A +  +      L++G 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HG+++  G  +D  +AN+L++MY KC        LFD +PQ ++ SWN          
Sbjct: 180 QLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWN---------- 229

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                    +I+GYVQNG + EA  LF  M +   I+P+ ++  
Sbjct: 230 ------------------------GIISGYVQNGLMGEAEHLFRGM-ISAGIKPDSITFA 264

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR-VFEDSSF 320
           S LP  + L+ L   K+IHG+ IR  +  DV L +ALID+Y KC  ++ A++ + + SSF
Sbjct: 265 SFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSF 324

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
             D +  ++++SGY L+GK  EA+  +  +V    KP  +T   +  A      +N G E
Sbjct: 325 --DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKE 382

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           ++ S+I T ++     + + ++DM  + G+LD A      +  E     W +++++   +
Sbjct: 383 LHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLACRVFNRI-TEKDAICWNSMITSCSQN 440

Query: 441 G 441
           G
Sbjct: 441 G 441



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 194/421 (46%), Gaps = 64/421 (15%)

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y   G    ++ +F ++Q      +N +I G+      N AL  +  M  + VSPD +T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
             + K    +K + +G ++H     +G   DV + +SL+ +Y + G  S+   LFD +PQ
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
                                             ++   W  M+NGYV+NGD   A+ +F
Sbjct: 122 ----------------------------------KDSVLWNVMLNGYVKNGDSGNAIKIF 147

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
           LEM+    I+PN V+   VL  C+S   L  G Q+HG A+   L  D  + N L+ MYSK
Sbjct: 148 LEMR-HSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSK 206

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           C  L  AR++F D+    D ++W+ I+SGY  +G   EA  L+  M+  G KPD IT   
Sbjct: 207 CQCLQAARKLF-DTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFAS 265

Query: 365 VLSACGRSGLINEGLEI-YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            L        +NE L + +   I+ Y I+      A V+D+  ++  +D    + K   V
Sbjct: 266 FLPC------VNELLSLKHCKEIHGYIIRH-----AVVLDVFLKSALIDI---YFKCRDV 311

Query: 424 EPSPS-----------IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
           E +             +   ++S  V++G ++    A++ L+Q E   P++ V+ S+++ 
Sbjct: 312 EMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQ-ERMKPTS-VTFSSIFP 369

Query: 473 S 473
           +
Sbjct: 370 A 370



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 131/325 (40%), Gaps = 44/325 (13%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           TS T        A   +L L K+ H  I+         V + ++  YA CG+   +  VF
Sbjct: 360 TSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVF 419

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           N I  KD   +NS+I    +N    EA+ LF  M       D  +++        +  L+
Sbjct: 420 NRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALH 479

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  IHGL IK     D+   +SL+ MY KCG  +    +FD M ++N  SWN       
Sbjct: 480 YGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWN------- 532

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                      ++I+ Y  +GDL E L LF EM L++ I+P+ V
Sbjct: 533 ---------------------------SIISAYGNHGDLKECLALFHEM-LRNGIQPDHV 564

Query: 259 SLVSVLPTCSSLIGLSGGKQIH-----GFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           + + ++  C     +  G + +      + I   + H       + DM+ + G L  A  
Sbjct: 565 TFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYA----CVADMFGRAGRLHEAFE 620

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHG 338
                 F  DA  W +++    +HG
Sbjct: 621 TINSMPFPPDAGVWGTLLGACHIHG 645



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 5/201 (2%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           Y   ++   L   A   +L   K+ H  ++     S+ +  + LI  YA CG    S+ V
Sbjct: 460 YDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRV 519

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           F+ +Q K+   +NS+I+ Y  NHG   E L LF  M  + + PD  T   I    G    
Sbjct: 520 FDRMQEKNEVSWNSIISAY-GNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQ 578

Query: 137 LNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRI 194
           ++ G+   H ++ + G    +     +  M+ + G+  E     + MP   + G W   +
Sbjct: 579 VDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLL 638

Query: 195 SGHASSGDFSLV-VRSRRVFD 214
                 G+  L  V S+ +FD
Sbjct: 639 GACHIHGNVELAEVASKHLFD 659


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 174/515 (33%), Positives = 274/515 (53%), Gaps = 46/515 (8%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H Q    G+ S+ FV++ LI  Y+ CG    ++ +F+ I  ++V  + S+I+GYV+N
Sbjct: 106 KQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQN 165

Query: 100 HGHNEALELFSNMY------YSNVSP-----DDFTLATISKLSGEIKDLNVGMLIHGLSI 148
               EA+ LF          Y  +       D   L  +      +   +V   +HGL++
Sbjct: 166 ERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAV 225

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K GF   + + N+LM  Y KCG+ S                                   
Sbjct: 226 KKGFEGCLAVGNTLMDAYAKCGEISV---------------------------------- 251

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           SR+VFD M+  +V +W ++I  Y QNG   EA  LF +M  +  +  N V+L +VL  C+
Sbjct: 252 SRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACA 311

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
               L  GK IH   ++ EL  ++ +  +++DMY KCG ++ AR+ F D    K+  +W+
Sbjct: 312 HSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAF-DRLKRKNVKSWT 370

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
            +V+GYG+HG G EA+ ++ +M+  G KP+ IT V VL+AC  +GL+ EG   +N +   
Sbjct: 371 VMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCE 430

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           + ++P  E  +C+VD+LGRAG L  A   I+ M V+P   +WG+L+ A  +H N E+ ++
Sbjct: 431 FDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEI 490

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
           + + L +L+P N   YV LSN+YA + RWD V  +R +MK+ GL K+PG S +   G+ H
Sbjct: 491 SARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVH 550

Query: 509 CFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            F V DK HP    IYE LD+L + ++     P++
Sbjct: 551 VFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNV 585



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 196/409 (47%), Gaps = 60/409 (14%)

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +    VY +NS+I  + ++    +AL  FS+M   ++ P+  T     K    + DL  G
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             IH  +   G+  D+ +A++L+ MY KCG  ++   LFDE+P+RNV SW          
Sbjct: 106 KQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSW---------- 155

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS- 259
                                   T+MI+GYVQN    EA+ LF E  L D  + +++  
Sbjct: 156 ------------------------TSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVG 191

Query: 260 ---------LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
                    L  V+  C+ +   S  + +HG A++K     +++ N L+D Y+KCG +  
Sbjct: 192 VGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISV 251

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSAC 369
           +R+VF D     D  +W+S+++ Y  +G   EA  L++ MV  G  + + +T+  VL AC
Sbjct: 252 SRKVF-DGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLAC 310

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD---RALDFIKTMPVEPS 426
             SG +  G  I++ V+    ++    +   +VDM  + G+++   +A D +K   V+  
Sbjct: 311 AHSGALQIGKCIHDQVVKM-ELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKS- 368

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPENPSNYVSLSNLYAS 473
              W  +V+   MHG+ +     +  +I+  ++P    NY++  ++ A+
Sbjct: 369 ---WTVMVAGYGMHGHGKEAMKVFYEMIRCGIKP----NYITFVSVLAA 410



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 2/111 (1%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           Y + T+   L   A   +L++ K  H Q++ +    N  V T ++  Y  CG+   ++  
Sbjct: 298 YNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKA 357

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATI 127
           F+ ++ K+V  +  ++ GY   HGH  EA+++F  M    + P+  T  ++
Sbjct: 358 FDRLKRKNVKSWTVMVAGY-GMHGHGKEAMKVFYEMIRCGIKPNYITFVSV 407


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 182/569 (31%), Positives = 286/569 (50%), Gaps = 68/569 (11%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H+Q++      +P+++ KLI +Y+L    + +  VFN +   +V+LYN LI  Y  +
Sbjct: 39  KQIHAQLIKCHLHQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLS 98

Query: 100 HGHNEALELFS---NMYYSNVSPDDFTLATISK-LSGEIKDLNVGMLIHGLSIKIGFVVD 155
              + +L  F     M+   V  D+FT   + K  +G    L++  ++H    K+GF  D
Sbjct: 99  GNESNSLCAFGVLLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWD 158

Query: 156 VILANSLMSMYVKCGK-------------------------------FSECLNLFDEMPQ 184
           + + NSL+  Y +CG                                    L +FDEMP+
Sbjct: 159 IFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPE 218

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           R+  SWN  + G   +G+     ++ ++F++M  R++ +W+ M+ GY +NGD+D A +LF
Sbjct: 219 RDRVSWNTMLDGFTKAGEMD---KAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLF 275

Query: 245 LE-------------------------MQLKDRIEPNKVSL-----VSVLPTCSSLIGLS 274
                                      M L D +E + + L     +S+L  C+    L 
Sbjct: 276 DRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLG 335

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK++H   +R        + N+ IDMY+KCG +D A RVF      KD ++W+S++ G+
Sbjct: 336 LGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGF 395

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           G+HG G +++ L+N MV  G KPD  T +G+L AC  +GL+NEG   + S+   Y I P 
Sbjct: 396 GIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQ 455

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+VD+LGR G L  A   +++MP EP+  I G L+ A  MH + ++     K L 
Sbjct: 456 IEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLF 515

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +L P +P N+  LSN+YA S  W  VA++R  M D G +K  G S I +  + H F+V D
Sbjct: 516 KLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEGGQKPSGVSSIEVEEEVHEFTVRD 575

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            +HP S  IY M+D L+  +R     P L
Sbjct: 576 WSHPKSGDIYNMIDRLVHDLRQVGYVPRL 604



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 101/263 (38%), Gaps = 17/263 (6%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ-HKD 85
           L   A    L L K+ H   L      +  V    I  YA CG    +  VFN ++  KD
Sbjct: 325 LAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKD 384

Query: 86  VYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LI 143
           +  +NS+I+G+   HGH E ++ELF+ M      PD +T   +         +N G    
Sbjct: 385 LVSWNSMIHGF-GIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGLVNEGRGYF 443

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGD 202
           + +    G V  +     ++ +  + G   E   L   MP + N       +       D
Sbjct: 444 YSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNAIILGTLLGACRMHND 503

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
             L     +   ++   +   ++ + N Y Q+GD      +  +M  +   +P+ VS + 
Sbjct: 504 VKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQMNDEGGQKPSGVSSIE 563

Query: 263 VLPTCSSLIGLSGGKQIHGFAIR 285
           V             +++H F +R
Sbjct: 564 V------------EEEVHEFTVR 574


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/495 (33%), Positives = 276/495 (55%), Gaps = 36/495 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           ++L +Q HS  +  G  S+ +VS  LI  Y+  G   +++ +   ++ +DV  + S+I G
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           YV++    EAL  F  M    V PD+  LA+ +     IK +  G+ IH      G+  D
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + + N+L+++Y +CG+  E  +LF E+                                 
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREI--------------------------------- 508

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
            + ++   W  +I+G+ Q+    +AL++F++M  +   + N  + +S +   ++L  +  
Sbjct: 509 -EHKDEITWNGLISGFGQSRLYKQALMVFMKMG-QAGAKYNVFTFISAISALANLADIKQ 566

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GKQ+HG A++     +  + NALI +Y KCGS++ A+ +F + S  ++ ++W++I++   
Sbjct: 567 GKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSL-RNEVSWNTIITSCS 625

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            HG+G EA+ L+++M   G KP+ +T +GVL+AC   GL+ EGL  + S+ N Y + P  
Sbjct: 626 QHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIP 685

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           +  ACVVD+LGRAGQLDRA  F+  MP+  +  IW  L+SA  +H N E+ +LA K L++
Sbjct: 686 DHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLE 745

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           LEP + ++YV LSN YA + +W    ++R MMKDRG++K PG SWI +    H F V D+
Sbjct: 746 LEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDR 805

Query: 516 AHPCSVSIYEMLDDL 530
            HP S  IY+ L +L
Sbjct: 806 LHPLSDQIYKFLSEL 820



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 180/397 (45%), Gaps = 44/397 (11%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+Q+      S  FV   LI  Y   G    ++ VF  +   D   +N+LI+G+ +  GH
Sbjct: 167 HAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQC-GH 225

Query: 103 NE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
            E AL++F  M  S + PD  T+A++      + DL  G  +H   +K G   D I   S
Sbjct: 226 GECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGS 285

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+ +YVKCG      ++F      N+G                             R NV
Sbjct: 286 LLDLYVKCGDIETAHDIF------NLGD----------------------------RTNV 311

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
             W  M+  Y Q  DL ++  +F +MQ    I PN+ +   +L TC+    +  G+QIH 
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATG-IHPNQFTYPCILRTCTCTGQIELGEQIHS 370

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
            +I+     D+ +   LIDMYSK G LD AR++ E     +D ++W+S+++GY  H    
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE-KRDVVSWTSMIAGYVQHDFCE 429

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV-INTYRIKPTTEICAC 400
           EA+  + +M   G  PD I +    SAC     + +GL+I+  V ++ Y       I   
Sbjct: 430 EALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY--AADISIWNT 487

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSA 436
           +V++  R G+ + A    +   +E    I W  L+S 
Sbjct: 488 LVNLYARCGRSEEAFSLFR--EIEHKDEITWNGLISG 522



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 141/306 (46%), Gaps = 38/306 (12%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           ++++   Q H+++   G+ ++  +   L+  YA CG+  ++  +F  I+HKD   +N LI
Sbjct: 461 KAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLI 520

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +G+ ++  + +AL +F  M  +    + FT  +       + D+  G  +HG ++K G  
Sbjct: 521 SGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHT 580

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +  +AN+L+S+Y KCG   +   +F EM  RN  SWN                      
Sbjct: 581 SETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNT--------------------- 619

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                        +I    Q+G   EAL LF +M+ ++ ++PN V+ + VL  CS  +GL
Sbjct: 620 -------------IITSCSQHGRGLEALDLFDQMK-QEGLKPNDVTFIGVLAACSH-VGL 664

Query: 274 --SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
              G       +    LN        ++D+  + G LD ARR  ++     +A+ W +++
Sbjct: 665 VEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLL 724

Query: 332 SGYGLH 337
           S   +H
Sbjct: 725 SACKVH 730



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 8/229 (3%)

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           N+ I  +A +G   LV ++R+VF ++  R+  +W AM++GY Q+G   EA  L+ +M   
Sbjct: 82  NLLIDLYAKNG---LVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWT 138

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             I P    L SVL  C+     + G+ IH    ++    +  + NALI +Y   GS   
Sbjct: 139 AVI-PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKL 197

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           A RVF D  F  D +T+++++SG+   G G  A+ ++++M   G +PD +T+  +L+AC 
Sbjct: 198 AERVFCDMLFC-DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACA 256

Query: 371 RSGLINEGLEIYNSVINT-YRIKPTTEICACVVDMLGRAGQLDRALDFI 418
             G + +G ++++ ++         TE    ++D+  + G ++ A D  
Sbjct: 257 SVGDLQKGKQLHSYLLKAGMSFDYITE--GSLLDLYVKCGDIETAHDIF 303



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +IH  ++ + L  D  + N LID+Y+K G +  AR+VF++ S ++D ++W +++SGY   
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELS-SRDHVSWVAMLSGYAQS 122

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           G G EA  LY++M      P    +  VLSAC +  L  +G  I+  V
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQV 170


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 164/479 (34%), Positives = 275/479 (57%), Gaps = 7/479 (1%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
            V   L+  YA       ++ +F+ +  +DV  + +L++GY +    +EA  +F  M  +
Sbjct: 167 LVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVA 226

Query: 116 NVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
               P++ TL   +  +G+I  L +G ++H   ++ G  + V L N+L+ M+ KCG  + 
Sbjct: 227 GGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVAS 286

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
              +FD MP ++V SW   +S +A  GD      + ++F ++  RN  +W+ M+  Y Q 
Sbjct: 287 AKEIFDGMPIKDVYSWTSMVSAYAKCGDLE---NAGKLFKEIPNRNAVSWSCMVAAYSQA 343

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH-GFAIRKELNHDVS 293
              +EA+ +F +M +   +EP   +LVSVL  C+ L  L  G+ ++  + +  ++   V+
Sbjct: 344 NLPEEAMRIFNDM-IAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVN 402

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L NA IDM++KCG +  A R+F +   +K+ ++W++++  + LHG+  EA+ L+ K   +
Sbjct: 403 LSNAFIDMFAKCGDVGAASRLFRNME-DKNVVSWNTMIVAHALHGQSEEALHLFQKFKAI 461

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G  PD IT +GVLSAC  SGL++EG   +  +   Y I+P  E  AC++D+LG+ G L+ 
Sbjct: 462 GIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEE 521

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A +  ++MPV    + WGAL++A  MHGN E+   A   L+ L+P +   YV +S +YAS
Sbjct: 522 AFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQIYAS 581

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
             +W  V  +RT+M+DRG+KK+PGCS I + GK H F  AD +H  S  IY  L+++ L
Sbjct: 582 KSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGKFHEFLAADVSHAHSEDIYAALENIYL 640



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 185/430 (43%), Gaps = 73/430 (16%)

Query: 50  GHISNPFVSTKLITAYALCGQPT---QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEAL 106
           G  ++ F +++L+   AL   P     + ++    +  + Y+  +++ G+++      AL
Sbjct: 58  GLAAHRFPASRLLAFCALSDPPRLAHAAAVLAQCAEGPNAYMLATMMRGFLRAGKPAHAL 117

Query: 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSLMSM 165
            LF  +    +  D  T+  +  +       +    IH ++ K GF+   V++ N+L+ M
Sbjct: 118 ALFRRVLRDRLPADARTI--VFAVKAATTSSSPAEAIHCVAFKRGFIGQSVLVGNALVHM 175

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y       +   LFDEM  R+V SW   + G                             
Sbjct: 176 YASSMSLPDARKLFDEMADRDVVSWTTLVDG----------------------------- 206

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG-GKQIHGFAI 284
                Y + G  DEA  +F  M +     PN+V+LV+   + +  IGL G G+ +H   +
Sbjct: 207 -----YARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAA-ASAAGQIGLLGLGRMVHQCVV 260

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF------------------------ 320
              +   V+L NAL+DM+ KCG +  A+ +F+                            
Sbjct: 261 ESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGK 320

Query: 321 ------NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
                 N++A++WS +V+ Y       EA+ ++N M+  G +P   T+V VLSAC + G 
Sbjct: 321 LFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGC 380

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++ G  +Y++ I +++++ T  +    +DM  + G +  A    + M  +   S W  ++
Sbjct: 381 LDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVS-WNTMI 439

Query: 435 SASVMHGNSE 444
            A  +HG SE
Sbjct: 440 VAHALHGQSE 449



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 124/236 (52%), Gaps = 8/236 (3%)

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N Y    M+ G+++ G    AL LF  + L+DR+  +  ++V  +   ++    S  + I
Sbjct: 96  NAYMLATMMRGFLRAGKPAHALALFRRV-LRDRLPADARTIVFAVKAATT--SSSPAEAI 152

Query: 280 HGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           H  A ++  +   V + NAL+ MY+   SL  AR++F++ + ++D ++W+++V GY   G
Sbjct: 153 HCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMA-DRDVVSWTTLVDGYARGG 211

Query: 339 KGHEAVLLYNKMVCLGSK-PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
              EA  ++ +MV  G   P+ +T+V   SA G+ GL+  G  ++  V+ +  ++ +  +
Sbjct: 212 LPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVES-GVRMSVNL 270

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
              +VDM G+ G +  A +    MP++   S W ++VSA    G+ E     +K +
Sbjct: 271 ENALVDMFGKCGCVASAKEIFDGMPIKDVYS-WTSMVSAYAKCGDLENAGKLFKEI 325



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 129/307 (42%), Gaps = 53/307 (17%)

Query: 42  SHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101
           S  +I     I + +  T +++AYA CG    +  +F  I +++   ++ ++  Y + + 
Sbjct: 286 SAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANL 345

Query: 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI---KIGFVVDVIL 158
             EA+ +F++M  + V P D TL ++     ++  L+VG  ++   I   K+   V+  L
Sbjct: 346 PEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVN--L 403

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
           +N+ + M+ KCG       LF  M  +NV SWN  I  HA                    
Sbjct: 404 SNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHA-------------------- 443

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG-- 276
                          +G  +EAL LF + +    I P++++ + VL  CS    +S G  
Sbjct: 444 --------------LHGQSEEALHLFQKFKAIG-IFPDEITYIGVLSACSHSGLVSEGRY 488

Query: 277 -----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
                K ++G   R E          +ID+  K G L+ A  V        D   W +++
Sbjct: 489 HFKEMKIVYGIEPRAEHY------ACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALL 542

Query: 332 SGYGLHG 338
           +   +HG
Sbjct: 543 NACRMHG 549


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 168/500 (33%), Positives = 271/500 (54%), Gaps = 50/500 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYA-LCGQPTQS-------------QLVFNSIQHKDVYL 88
           H+  L  G  ++ F +  L+  Y  L   P+ S             + VF+ +  KDV  
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +N+L+ G  ++  H EAL L   M+     PD FTL+++  +  E  D+  GM +HG + 
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFAT 200

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           + GF  DV + +SL+ MY  C +                              D+S+   
Sbjct: 201 RNGFHDDVFVGSSLIDMYANCTR-----------------------------TDYSV--- 228

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
             +VFD +  R+   W +M+ G  QNG +DEAL LF  M L   I+P  V+  S++P C 
Sbjct: 229 --KVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRM-LHSGIKPMPVTFSSLIPACG 285

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           +L  L  GKQ+H + IR   + +V + ++LIDMY KCG++  ARR+F D   + D ++W+
Sbjct: 286 NLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIF-DRIQSPDIVSWT 344

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++ G+ LHG   EA++L+++M     KP+ IT + VL+AC  +GL+++G + +NS+ + 
Sbjct: 345 AMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDH 404

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           Y I P+ E  A + D LGR G+L+ A +FI  M ++P+ S+W  L+ A  +H N+ + + 
Sbjct: 405 YGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEE 464

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
             K +  LEP +  +++ LSN Y+SS RW+  A LR  M+ +G++K P CSWI +  K H
Sbjct: 465 VAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQH 524

Query: 509 CFSVADKAHPCSVSIYEMLD 528
            F   DK+HP    I + L+
Sbjct: 525 VFVAHDKSHPWYERIIDALN 544



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 182/383 (47%), Gaps = 43/383 (11%)

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN------VGMLIHGLSIKIGFVVDV 156
           + A+ LF  M  S+  P     + ++ L G +K         +G  +H L+++ G   D 
Sbjct: 36  HHAIALFLRMRASD--PAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGAFADR 93

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS--RRVFD 214
             AN+L+++Y K             +P             H+   D S VV    R+VFD
Sbjct: 94  FAANALLNLYCK-------------LPAP---------PSHSPEMDGSAVVLESVRKVFD 131

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  ++V +W  ++ G  ++G   EAL L  EM  +D  +P+  +L SVLP  +    + 
Sbjct: 132 EMPEKDVVSWNTLVLGCAESGRHGEALGLVREM-WRDGCKPDSFTLSSVLPIFAEGADVR 190

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G ++HGFA R   + DV + ++LIDMY+ C   D + +VF++    +DAI W+S+++G 
Sbjct: 191 RGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPV-RDAILWNSMLAGC 249

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G   EA+ L+ +M+  G KP  +T   ++ ACG    +  G +++  VI        
Sbjct: 250 AQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRG-GFDGN 308

Query: 395 TEICACVVDMLGRAGQLD---RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
             I + ++DM  + G +    R  D I++    P    W A++    +HG +  + L   
Sbjct: 309 VFISSSLIDMYCKCGNVSIARRIFDRIQS----PDIVSWTAMIMGHALHGPAR-EALVLF 363

Query: 452 SLIQLEPENPSNYVSLSNLYASS 474
             ++L    P++   L+ L A S
Sbjct: 364 DRMELGNLKPNHITFLAVLTACS 386



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 137/323 (42%), Gaps = 44/323 (13%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L + A    ++   + H      G   + FV + LI  YA C +   S  VF+
Sbjct: 173 SFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFD 232

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           ++  +D  L+NS++ G  +N   +EAL LF  M +S + P   T +++    G +  L +
Sbjct: 233 NLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLL 292

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +H   I+ GF  +V +++SL+ MY KCG  S    +FD +   ++ SW   I GHA 
Sbjct: 293 GKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHA- 351

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                             +G   EALVLF  M+L + ++PN ++
Sbjct: 352 ---------------------------------LHGPAREALVLFDRMELGN-LKPNHIT 377

Query: 260 LVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
            ++VL  CS    +  G +        + I   L H      AL D   + G L+ A   
Sbjct: 378 FLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHA----ALADTLGRPGKLEEAYNF 433

Query: 315 FEDSSFNKDAITWSSIVSGYGLH 337
                    A  WS+++    +H
Sbjct: 434 ISGMKIKPTASVWSTLLRACKVH 456



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 20/237 (8%)

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK---VSLVSVLPTCSSLIGLSGGKQI 279
           +W   I      GD   A+ LFL M+  D          SL   L +C++L   + G  +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGS--------------LDCARRVFEDSSFNKDAI 325
           H  A+R     D    NAL+++Y K  +              L+  R+VF++    KD +
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMP-EKDVV 139

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W+++V G    G+  EA+ L  +M   G KPD  T+  VL        +  G+E++   
Sbjct: 140 SWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFA 199

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
                      + + ++DM     + D ++     +PV  +  +W ++++    +G+
Sbjct: 200 TRN-GFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDA-ILWNSMLAGCAQNGS 254


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/486 (34%), Positives = 269/486 (55%), Gaps = 19/486 (3%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T ++  Y   G    ++ VF  +  K   ++N++I+GYV++    +A ELF  M    V 
Sbjct: 238 TTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVP 297

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSI-------KIGFVVDVILA--NSLMSMYVKC 169
            D+FT  ++          N G  +HG S+       +  FV +  L   N+L+++Y K 
Sbjct: 298 LDEFTFTSVLSACA-----NAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKG 352

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           GK      +FD M  ++V SWN  +SG+  SG     V    VF  M  +N  +W  M++
Sbjct: 353 GKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVE---VFKVMPYKNDLSWMVMVS 409

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           GYV  G  ++AL LF +M+ +D ++P   +    +  C  L  L  G+Q+H   ++    
Sbjct: 410 GYVHGGLSEDALKLFNQMRAED-VKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFE 468

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
              S  NAL+ MY+KCG+++ AR VF     N D+++W++++S  G HG G EA+ L+++
Sbjct: 469 ASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMISALGQHGHGREALELFDQ 527

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           MV  G  PD I+ + +L+AC  +GL++EG   + S+   + I P  +  A ++D+LGR+G
Sbjct: 528 MVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSG 587

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
           ++  A D IKTMP EP+PSIW A++S    +G+ E    A   L ++ P++   Y+ LSN
Sbjct: 588 RIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSN 647

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
            Y+++ RW   A +R +M+DRG+KK PGCSWI +  K H F V D  HP +  +Y+ L+ 
Sbjct: 648 TYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEV 707

Query: 530 LILIMR 535
           +   MR
Sbjct: 708 IGARMR 713



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 110/516 (21%), Positives = 220/516 (42%), Gaps = 108/516 (20%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQ--HKDVYLYNSLINGYVKNHGHNEALELFSN 111
            P  +T L+ A+A  G+   +   F+++    +D  L+N++++ + +      A+ +F  
Sbjct: 93  GPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHA 152

Query: 112 MYYS-NVSPDDFTLATISKLSGEIKDLNVG--MLIHGLSIKIGFVVDVILANSLMSMYVK 168
           +  S ++ PDD++   +    G++ +L       +H   +K G    + ++N+L+++Y+K
Sbjct: 153 LLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMK 212

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           C           + P+    SW+                 +R+V D+M  ++   WT M+
Sbjct: 213 C-----------DTPE---ASWD-----------------ARKVLDEMPDKDDLTWTTMV 241

Query: 229 NGYVQNGDLDEALVLFLEMQLK------------------------------DRIEPNKV 258
            GYV+ GD++ A  +F E+  K                              +++  ++ 
Sbjct: 242 VGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEF 301

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH----DVSLCNALIDMYSKCGSLDCARRV 314
           +  SVL  C++      GK +HG  IR + N      + + NAL+ +YSK G +  A+R+
Sbjct: 302 TFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRI 361

Query: 315 FEDSSFNKDAITWSSIVSGY------------------------------GLHGK-GHEA 343
           F+  +  KD ++W++I+SGY                               +HG    +A
Sbjct: 362 FDTMNL-KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDA 420

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + L+N+M     KP   T  G ++ACG  G +  G +++  ++     + +      ++ 
Sbjct: 421 LKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQC-GFEASNSAGNALLT 479

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPENP 461
           M  + G ++ A      MP   S S W A++SA   HG+       +  ++   ++P+  
Sbjct: 480 MYAKCGAVNDARLVFLVMPNLDSVS-WNAMISALGQHGHGREALELFDQMVAEGIDPDRI 538

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
           S    L+    +    +      +M +D G+  SPG
Sbjct: 539 SFLTILTACNHAGLVDEGFHYFESMKRDFGI--SPG 572



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 138/335 (41%), Gaps = 81/335 (24%)

Query: 40  KQSHSQILSLGHISNPF----VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           K  H QI+ L     P     V+  L+T Y+  G+   ++ +F+++  KDV  +N++++G
Sbjct: 320 KSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSG 379

Query: 96  YVKN-----------------------------HG--HNEALELFSNMYYSNVSPDDFTL 124
           Y+ +                             HG    +AL+LF+ M   +V P D+T 
Sbjct: 380 YIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTY 439

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           A      GE+  L  G  +H   ++ GF       N+L++MY KCG  ++   +F  MP 
Sbjct: 440 AGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPN 499

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
            +  SWN                                  AMI+   Q+G   EAL LF
Sbjct: 500 LDSVSWN----------------------------------AMISALGQHGHGREALELF 525

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA------L 298
            +M + + I+P+++S +++L  C+       G    GF   + +  D  +         L
Sbjct: 526 DQM-VAEGIDPDRISFLTILTACN-----HAGLVDEGFHYFESMKRDFGISPGEDHYARL 579

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           ID+  + G +  AR + +   F      W +I+SG
Sbjct: 580 IDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSG 614



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 4/174 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  +Q H+ ++  G  ++      L+T YA CG    ++LVF  + + D   +N++I+
Sbjct: 451 ALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMIS 510

Query: 95  GYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGF 152
             +  HGH  EALELF  M    + PD  +  TI         ++ G      +    G 
Sbjct: 511 A-LGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGI 569

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISGHASSGDFSL 205
                    L+ +  + G+  E  +L   MP     S W   +SG  ++GD   
Sbjct: 570 SPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEF 623


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/508 (32%), Positives = 283/508 (55%), Gaps = 36/508 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R++   KQ H+Q+ + G I +  V+ KL+   A       + L+FN ++ +D   ++ +I
Sbjct: 14  RNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMI 73

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            G+VKN  +    + F  +  +   PD+F+L  + K   +   L +G LIH   +K G  
Sbjct: 74  GGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLH 133

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
           +D  + ++L+ MY KCG                                  ++  ++++F
Sbjct: 134 LDNFVCSTLVDMYAKCG----------------------------------MIDNAKQLF 159

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D+M ++++   T MI GY + G  +E+ VLF +M+ +D   P+KV++V+++  C+ L  +
Sbjct: 160 DRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMR-RDGFVPDKVAMVTIVNACAKLGAM 218

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           +  + +H +   +  + DV L  A+IDMY+KCGS+D +R +F D    K+ I+WS+++  
Sbjct: 219 NKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIF-DRMEQKNVISWSAMIGA 277

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG HG+G EA+ L++ M+  G  P+ IT + +L AC  +GL+++GL++++ +  +Y ++P
Sbjct: 278 YGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRP 337

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             +   C+VD+LGRAG+LD+AL  I+ M VE    IW A + A  +H   ++ + A K L
Sbjct: 338 DVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLL 397

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           + L+ +NP +Y+ LSN+YA++ RW  VA++R +M  R LKK PG +WI +    + F   
Sbjct: 398 LSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAG 457

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASP 541
           D +H  S  IYEML  L   +  A   P
Sbjct: 458 DNSHLRSNEIYEMLKSLSQKLESAGYVP 485



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 5/163 (3%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            +S L  C ++  +   KQ+H       + HD+ + N L+ M +K   L  A  +F    
Sbjct: 6   FISTLFKCRNIFQI---KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKME 62

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D ++WS ++ G+  +G        + +++  GSKPD  ++  V+ AC  +  +  G 
Sbjct: 63  -ERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGR 121

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
            I+++V+    +     +C+ +VDM  + G +D A      MP
Sbjct: 122 LIHSTVLKN-GLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMP 163


>gi|357450559|ref|XP_003595556.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484604|gb|AES65807.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1040

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/516 (34%), Positives = 296/516 (57%), Gaps = 39/516 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+ + L+ +    SLK+ K  HS +++        V+T L++ YA       ++L+F 
Sbjct: 217 SVTLINLLRATVESNSLKIGKVLHSLVVASNLCKELTVNTALLSMYAKLDSLKDARLMFE 276

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLN 138
            +  KDV ++N +I+ Y  +    E+LEL   M  S + PD FT +  IS ++ ++K + 
Sbjct: 277 KMPEKDVVVWNIMISVYSGSGCPKESLELVYCMVRSGIRPDMFTAIPAISSIT-KLKSIE 335

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  +H   I+ G    V + NSL+ MY  C   +                         
Sbjct: 336 WGKQLHAQVIRNGSDYQVSVHNSLVDMYSTCADLNS------------------------ 371

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                     +R++F  +K R V +W+AMI GY  + +  EAL LF+EM+L    + + V
Sbjct: 372 ----------ARKIFGLIKDRTVVSWSAMIKGYAMHDNCLEALSLFIEMKLSG-TKVDLV 420

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF-ED 317
            ++++LP  + +  L     +HG++++  L+   SL  +L++ Y+KCG ++ AR++F E+
Sbjct: 421 IVINILPAFAKIGALHYVGYLHGYSLKTNLDSLKSLKTSLLNSYAKCGCIEMARKLFNEE 480

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
            S  KD + W+S+++ Y  HG+  +   LYN++     KPD +T +G+L+AC  SGL+++
Sbjct: 481 KSSLKDIVAWNSMITAYSNHGEWFQCFELYNQIKLSIVKPDHVTFLGMLTACVNSGLVDK 540

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G EI+  +++ Y  +P+ E  AC+VD+LGRAG++D A   I+T  +     ++G L+SA 
Sbjct: 541 GKEIFKEMVDIYGFQPSKEHNACMVDLLGRAGKIDEARKIIETNQLNSDARVYGPLLSAC 600

Query: 438 VMHG-NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
            MHG  ++  +LA + LI++EPENP+NYV LSN++A++ +WD  A++R+ ++DRGLKK+P
Sbjct: 601 KMHGLETDFAELAAEKLIKMEPENPANYVLLSNIFAAAGKWDKFAKMRSFLRDRGLKKTP 660

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           GCSW+ + G+ H F VAD +HP S  IY +L  L L
Sbjct: 661 GCSWVVLDGQFHEFRVADHSHPRSEDIYSVLKVLEL 696



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 178/401 (44%), Gaps = 66/401 (16%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H++    G   N  +S+KLI +Y+  G    S  +F+  ++ D  +YN+ +      
Sbjct: 38  QQIHARFFLHGLHQNSSLSSKLIDSYSNFGLLHFSHKIFSFTENPDSIIYNAFLRNLFMF 97

Query: 100 HGHNEALELFSNMYYSNVSPD-DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
             + + L L+  M   ++ PD D   + +  L     +  + M+ HG  +K+G     ++
Sbjct: 98  GEYEKTLFLYKEMVQKSMCPDEDCCFSVLKSLFYVFHEKGLIMMAHGHVVKLGMDAFDLV 157

Query: 159 ANSLMSMY---------------------------VKCGKFSECLNLFDEMPQRNVGSWN 191
            N+L+ +Y                            + GK  E   LF  M   NV   +
Sbjct: 158 GNTLIELYGFLNGNGLVERKSVTKLNFWNNLIYEAYESGKIVESFELFCRMRNENVQPNS 217

Query: 192 V------RISGHASSGDF-----SLVVRS-------------------------RRVFDQ 215
           V      R +  ++S        SLVV S                         R +F++
Sbjct: 218 VTLINLLRATVESNSLKIGKVLHSLVVASNLCKELTVNTALLSMYAKLDSLKDARLMFEK 277

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  ++V  W  MI+ Y  +G   E+L L   M ++  I P+  + +  + + + L  +  
Sbjct: 278 MPEKDVVVWNIMISVYSGSGCPKESLELVYCM-VRSGIRPDMFTAIPAISSITKLKSIEW 336

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GKQ+H   IR   ++ VS+ N+L+DMYS C  L+ AR++F     ++  ++WS+++ GY 
Sbjct: 337 GKQLHAQVIRNGSDYQVSVHNSLVDMYSTCADLNSARKIFGLIK-DRTVVSWSAMIKGYA 395

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           +H    EA+ L+ +M   G+K D++ ++ +L A  + G ++
Sbjct: 396 MHDNCLEALSLFIEMKLSGTKVDLVIVINILPAFAKIGALH 436


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 170/503 (33%), Positives = 284/503 (56%), Gaps = 10/503 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  KQSH  ++  G   +     K I A +  G    +  VF      + YL+N++I 
Sbjct: 27  NLKTLKQSHCFMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHNTMIR 86

Query: 95  GYV---KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
                 + + H+ A+ ++   +     PD FT   + K+   + D+  G  +HG ++  G
Sbjct: 87  ALSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFG 146

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F   V +   L+ MY  CG   +   +FDEM  R+V  WN  ++G+   G+      +R 
Sbjct: 147 FDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMD---EARG 203

Query: 212 VFDQMK--RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           + + M    RN  +WT +I+GY ++G   EA+ +F  M L + ++P++V+L++VL  C+ 
Sbjct: 204 LLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRM-LMENVDPDEVTLLAVLSACAD 262

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  L  G++I  +   + +N  VSL NA+IDMY+K G++  A  VFE S   ++ +TW++
Sbjct: 263 LGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFE-SVNERNVVTWTT 321

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           I++G   HG G EA++++++MV  G KP+ +T + +LSAC   G ++ G   +NS+ + Y
Sbjct: 322 IITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKY 381

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I P  E   C++D+LGRAG+L  A + IK+MP E + +IWG+L++AS +H + ++ + A
Sbjct: 382 GINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAASNVHHDIDVGERA 441

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
              LI+LEP N  NY+ L+NLY++  RWD    +R MMK  G+KK  G S I +  + + 
Sbjct: 442 LYQLIKLEPNNSGNYMLLANLYSNLGRWDESRMMRKMMKGIGVKKLAGESSIEVENRVYK 501

Query: 510 FSVADKAHPCSVSIYEMLDDLIL 532
           F   D +HP    I+E+L ++ L
Sbjct: 502 FISGDLSHPQVEKIHELLQEMDL 524


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/495 (33%), Positives = 277/495 (55%), Gaps = 36/495 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           ++L +Q HS  +  G  S+ +VS  LI  Y+      +++ +   ++ +DV  + S+I G
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           YV++    EAL  F  M    V PD+  LA+ +     IK +  G+ IH      G+  D
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + + N+L+++Y +CG+  E  +LF E+  ++  +WN                        
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWN------------------------ 517

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                      +I+G+ Q+   ++AL++F++M  +   + N  + +S +   ++L  +  
Sbjct: 518 ----------GLISGFGQSRLYEQALMVFMKMS-QAGAKYNVFTFISAISALANLADIKQ 566

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GKQ+HG A++     +  + NALI +Y KCGS++ A+ +F + S  ++ ++W++I++   
Sbjct: 567 GKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSL-RNEVSWNTIITSCS 625

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            HG+G EA+ L+++M   G KP+ +T +GVL+AC   GL+ EGL  + S+ N Y + P  
Sbjct: 626 QHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIP 685

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           +  ACVVD+LGRAGQLDRA  F+  MP+  +  IW  L+SA  +H N E+ +LA K L++
Sbjct: 686 DHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLE 745

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           LEP + ++YV LSN YA + +W    ++R MMKDRG++K PG SWI +    H F V D+
Sbjct: 746 LEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDR 805

Query: 516 AHPCSVSIYEMLDDL 530
            HP S  IY+ L +L
Sbjct: 806 LHPLSDQIYKFLSEL 820



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 179/396 (45%), Gaps = 42/396 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+Q+      S  FV   LI  Y   G    ++ VF  +   D   +N+LI+G+ +  GH
Sbjct: 167 HAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQC-GH 225

Query: 103 NE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
            E AL++F  M  S + PD  T+A++      + DL  G  +H   +K G   D I   S
Sbjct: 226 GECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGS 285

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+ +YVKCG      ++F      N+G                             R NV
Sbjct: 286 LLDLYVKCGDIETAHDIF------NLGD----------------------------RTNV 311

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
             W  M+  Y Q  DL ++  +F +MQ    I PNK +   +L TC+    +  G+QIH 
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATG-IHPNKFTYPCILRTCTCTGQIELGEQIHS 370

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
            +I+     D+ +   LIDMYSK   LD AR++ E     +D ++W+S+++GY  H    
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLE-KRDVVSWTSMIAGYVQHDFCE 429

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV-INTYRIKPTTEICAC 400
           EA+  + +M   G  PD I +    SAC     + +GL+I+  V ++ Y       I   
Sbjct: 430 EALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY--AADISIWNT 487

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +V++  R G+ + A    + +  +   + W  L+S 
Sbjct: 488 LVNLYARCGRSEEAFSLFREIDHKDEIT-WNGLISG 522



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 140/306 (45%), Gaps = 38/306 (12%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           ++++   Q H+++   G+ ++  +   L+  YA CG+  ++  +F  I HKD   +N LI
Sbjct: 461 KAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLI 520

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +G+ ++  + +AL +F  M  +    + FT  +       + D+  G  +HG ++K G  
Sbjct: 521 SGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHT 580

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +  +AN+L+S+Y KCG   +   +F EM  RN  SWN                      
Sbjct: 581 SETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNT--------------------- 619

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                        +I    Q+G   EAL LF +M+ ++ ++PN V+ + VL  CS  +GL
Sbjct: 620 -------------IITSCSQHGRGLEALDLFDQMK-QEGLKPNDVTFIGVLAACSH-VGL 664

Query: 274 --SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
              G       +    LN        ++D+  + G LD ARR  ++     +A+ W +++
Sbjct: 665 VEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLL 724

Query: 332 SGYGLH 337
           S   +H
Sbjct: 725 SACKVH 730



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           N+ I  +A +G   LV ++R+VF ++  R+  +W AM++GY Q G   EA  L+ +M   
Sbjct: 82  NLLIDLYAKNG---LVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWT 138

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             I P    L SVL  C+     + G+ IH    ++    +  + NALI +Y   GS   
Sbjct: 139 AVI-PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKL 197

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           A RVF D  F  D +T+++++SG+   G G  A+ ++++M   G +PD +T+  +L+AC 
Sbjct: 198 AERVFCDMLFC-DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACA 256

Query: 371 RSGLINEGLEIYNSVINT-YRIKPTTEICACVVDMLGRAGQLDRALDFI 418
             G + +G ++++ ++         TE    ++D+  + G ++ A D  
Sbjct: 257 SVGDLQKGKQLHSYLLKAGMSFDYITE--GSLLDLYVKCGDIETAHDIF 303



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +IH  ++ + L  D  + N LID+Y+K G +  AR+VF++ S ++D ++W +++SGY   
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELS-SRDHVSWVAMLSGYAQR 122

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           G G EA  LY++M      P    +  VLSAC +  L  +G  I+  V
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQV 170


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 168/501 (33%), Positives = 276/501 (55%), Gaps = 45/501 (8%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L   + +HS +  L   S+P  +  LIT Y+ CG+   ++ VF+ I  +D+  +NS+I G
Sbjct: 132 LSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAG 191

Query: 96  YVKNHGHNEALELFSNM-YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           Y K     EA+E+F  M       PD+ +L ++    GE+ DL +G  + G  ++ G  +
Sbjct: 192 YAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTL 251

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +  + ++L+SMY KCG               ++GS                   +RR+FD
Sbjct: 252 NSYIGSALISMYAKCG---------------DLGS-------------------ARRIFD 277

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            M  R+V  W A+I+GY QNG  DEA+ LF  M+ +D +  NK++L +VL  C+++  L 
Sbjct: 278 GMAARDVITWNAVISGYAQNGMADEAISLFHAMK-EDCVTENKITLTAVLSACATIGALD 336

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GKQI  +A ++   HD+ +  ALIDMY+KCGSL  A+RVF++    K+  +W++++S  
Sbjct: 337 LGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMP-QKNEASWNAMISAL 395

Query: 335 GLHGKGHEAVLLYNKMVCL-----GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
             HGK  EA+ L+    C+     G++P+ IT VG+LSAC  +GL+NEG  +++ +   +
Sbjct: 396 ASHGKAKEALSLFQ---CMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLF 452

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            + P  E  +C+VD+L RAG L  A D I+ MP +P     GAL+ A     N ++ +  
Sbjct: 453 GLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIGERV 512

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            + +++++P N  NY+  S +YA+   W+  A +R +M+ +G+ K+PGCSWI +    H 
Sbjct: 513 IRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHLHE 572

Query: 510 FSVADKAHPCSVSIYEMLDDL 530
           F   D     S+ +  ++D L
Sbjct: 573 FHAGDGLCLDSIDLSNIIDLL 593



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 3/167 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   AT  +L L KQ        G   + FV+T LI  YA CG    +Q VF  +
Sbjct: 321 TLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEM 380

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNM--YYSNVSPDDFTLATISKLSGEIKDLNV 139
             K+   +N++I+    +    EAL LF  M        P+D T   +         +N 
Sbjct: 381 PQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNE 440

Query: 140 GM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           G  L   +S   G V  +   + ++ +  + G   E  +L ++MP++
Sbjct: 441 GYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEK 487


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/486 (34%), Positives = 269/486 (55%), Gaps = 19/486 (3%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T ++  Y   G    ++ VF  +  K   ++N++I+GYV++    +A ELF  M    V 
Sbjct: 236 TTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVP 295

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSI-------KIGFVVDVILA--NSLMSMYVKC 169
            D+FT  ++          N G  +HG S+       +  FV +  L   N+L+++Y K 
Sbjct: 296 LDEFTFTSVLSACA-----NAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKG 350

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           GK      +FD M  ++V SWN  +SG+  SG     V    VF  M  +N  +W  M++
Sbjct: 351 GKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVE---VFKVMPYKNDLSWMVMVS 407

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           GYV  G  ++AL LF +M+ +D ++P   +    +  C  L  L  G+Q+H   ++    
Sbjct: 408 GYVHGGLSEDALKLFNQMRAED-VKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFE 466

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
              S  NAL+ MY+KCG+++ AR VF     N D+++W++++S  G HG G EA+ L+++
Sbjct: 467 ASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMISALGQHGHGREALELFDQ 525

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           MV  G  PD I+ + +L+AC  +GL++EG   + S+   + I P  +  A ++D+LGR+G
Sbjct: 526 MVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSG 585

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
           ++  A D IKTMP EP+PSIW A++S    +G+ E    A   L ++ P++   Y+ LSN
Sbjct: 586 RIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSN 645

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
            Y+++ RW   A +R +M+DRG+KK PGCSWI +  K H F V D  HP +  +Y+ L+ 
Sbjct: 646 TYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEV 705

Query: 530 LILIMR 535
           +   MR
Sbjct: 706 IGARMR 711



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 110/515 (21%), Positives = 219/515 (42%), Gaps = 108/515 (20%)

Query: 55  PFVSTKLITAYALCGQPTQSQLVFNSI--QHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           P  +T L+ A A  G+   +   F+++    +D  L+N++++ + +      A+ +F  +
Sbjct: 92  PSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHAL 151

Query: 113 YYS-NVSPDDFTLATISKLSGEIKDLNVG--MLIHGLSIKIGFVVDVILANSLMSMYVKC 169
             S ++ PDD++   +    G++ +L       +H   +K G    + ++N+L+++Y+KC
Sbjct: 152 LGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKC 211

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
                      + P+    SW+                 +R+V D+M  ++   WT M+ 
Sbjct: 212 -----------DTPE---ASWD-----------------ARKVLDEMPDKDDLTWTTMVV 240

Query: 230 GYVQNGDLDEALVLFLEMQLK------------------------------DRIEPNKVS 259
           GYV+ GD++ A  +F E+  K                              +++  ++ +
Sbjct: 241 GYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFT 300

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNH----DVSLCNALIDMYSKCGSLDCARRVF 315
             SVL  C++      GK +HG  IR + N      + + NAL+ +YSK G +  A+R+F
Sbjct: 301 FTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIF 360

Query: 316 EDSSFNKDAITWSSIVSGY------------------------------GLHGK-GHEAV 344
           +  +  KD ++W++I+SGY                               +HG    +A+
Sbjct: 361 DTMNL-KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDAL 419

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+N+M     KP   T  G ++ACG  G +  G +++  ++     + +      ++ M
Sbjct: 420 KLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQC-GFEASNSAGNALLTM 478

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPENPS 462
             + G ++ A      MP   S S W A++SA   HG+       +  ++   ++P+  S
Sbjct: 479 YAKCGAVNDARLVFLVMPNLDSVS-WNAMISALGQHGHGREALELFDQMVAEGIDPDRIS 537

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
               L+    +    +      +M +D G+  SPG
Sbjct: 538 FLTILTACNHAGLVDEGFHYFESMKRDFGI--SPG 570



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 81/335 (24%)

Query: 40  KQSHSQILSLGHISNPF----VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           K  H QI+ L     P     V+  L+T Y+  G+   ++ +F+++  KDV  +N++++G
Sbjct: 318 KSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSG 377

Query: 96  YV-----------------KN------------HG--HNEALELFSNMYYSNVSPDDFTL 124
           Y+                 KN            HG    +AL+LF+ M   +V P D+T 
Sbjct: 378 YIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTY 437

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           A      GE+  L  G  +H   ++ GF       N+L++MY KCG  ++   +F  MP 
Sbjct: 438 AGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPN 497

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
            +  SWN                                  AMI+   Q+G   EAL LF
Sbjct: 498 LDSVSWN----------------------------------AMISALGQHGHGREALELF 523

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA------L 298
            +M + + I+P+++S +++L  C+       G    GF   + +  D  +         L
Sbjct: 524 DQM-VAEGIDPDRISFLTILTACN-----HAGLVDEGFHYFESMKRDFGISPGEDHYARL 577

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           ID+  + G +  AR + +   F      W +I+SG
Sbjct: 578 IDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSG 612



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 4/174 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  +Q H+ ++  G  ++      L+T YA CG    ++LVF  + + D   +N++I+
Sbjct: 449 ALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMIS 508

Query: 95  GYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGF 152
             +  HGH  EALELF  M    + PD  +  TI         ++ G      +    G 
Sbjct: 509 A-LGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGI 567

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISGHASSGDFSL 205
                    L+ +  + G+  E  +L   MP     S W   +SG  ++GD   
Sbjct: 568 SPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEF 621


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 170/512 (33%), Positives = 268/512 (52%), Gaps = 43/512 (8%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q+H Q L  G   + FVS+ L+  Y+ CG+   ++ +F+ I H+++  + S+I GYV+N
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 231

Query: 100 HGHNEALELFSNMYYS--------NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
              + AL LF               V  D   + ++      + + ++   +HG  IK G
Sbjct: 232 DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRG 291

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F  D+ + N+LM  Y KCG+      +FD M +R+V SWN                    
Sbjct: 292 FEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWN-------------------- 331

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                         ++I  Y QNG   E++ +F  M     I  N V+L +VL  C+   
Sbjct: 332 --------------SIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSG 377

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
               GK IH   I+  L  +V +  ++IDMY KCG ++ AR+ F D    K+  +WS++V
Sbjct: 378 SQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAF-DRMREKNVKSWSAMV 436

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           +GYG+HG   EA+ ++ +M   G KP+ IT V VL+AC  +GL+ EG   + ++ + + +
Sbjct: 437 AGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDV 496

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           +P  E   C+VD+LGRAG L  A D IK M + P   +WGAL+ A  MH N ++ +++ +
Sbjct: 497 EPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISAR 556

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            L +L+P+N   YV LSN+YA + RW+ V  +R +MK+ GL K PG S + I G+ H F 
Sbjct: 557 KLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFL 616

Query: 512 VADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           V D+ HP    IYE L+ L + ++     P +
Sbjct: 617 VGDREHPQHEKIYEYLEKLSMKLQEVGYVPDM 648



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 222/462 (48%), Gaps = 62/462 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T QHFL +   H + + +  S  + +  G +        L   Y+    P  + L    +
Sbjct: 64  TAQHFL-IFPEHTAFQFSGFSKRRSICAGAV--------LRRRYS--NNPNLTTLFNKYV 112

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
              +V+ +NS+I    ++    EAL  FS+M   ++ P+  T     K    + DL+ G 
Sbjct: 113 DKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGR 172

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
             H  ++  GF  D+ ++++L+ MY KCG+  +   LFDE+  RN+ SW           
Sbjct: 173 QAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSW----------- 221

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-------RIE 254
                                  T+MI GYVQN D   AL+LF E  +++        + 
Sbjct: 222 -----------------------TSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVC 258

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
            + +++VSVL  CS +   S  + +HGF I++    D+ + N L+D Y+KCG L  +RRV
Sbjct: 259 VDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRV 318

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSG 373
           F D    +D I+W+SI++ Y  +G   E++ ++++MV  G    + +T+  VL AC  SG
Sbjct: 319 F-DGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSG 377

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
               G  I++ VI    ++    +   ++DM  + G+++ A      M  E +   W A+
Sbjct: 378 SQRLGKCIHDQVIKM-GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR-EKNVKSWSAM 435

Query: 434 VSASVMHGNS-EMQDLAYK-SLIQLEPENPSNYVSLSNLYAS 473
           V+   MHG++ E  ++ Y+ ++  ++P    NY++  ++ A+
Sbjct: 436 VAGYGMHGHAKEALEVFYEMNMAGVKP----NYITFVSVLAA 473



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 130/306 (42%), Gaps = 45/306 (14%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           +T+  H  ++  G   +  V   L+ AYA CG+   S+ VF+ +  +DV  +NS+I  Y 
Sbjct: 279 ITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYA 338

Query: 98  KNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           +N    E++E+F  M     ++ +  TL+ +           +G  IH   IK+G   +V
Sbjct: 339 QNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNV 398

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            +  S++ MY KCGK       FD M ++NV SW                          
Sbjct: 399 FVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSW-------------------------- 432

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
                   +AM+ GY  +G   EAL +F EM +   ++PN ++ VSVL  CS    L  G
Sbjct: 433 --------SAMVAGYGMHGHAKEALEVFYEMNMAG-VKPNYITFVSVLAACSHAGLLEEG 483

Query: 277 -----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
                   H F +   + H       ++D+  + G L  A  + +      D + W +++
Sbjct: 484 WHWFKAMSHEFDVEPGVEH----YGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALL 539

Query: 332 SGYGLH 337
               +H
Sbjct: 540 GACRMH 545



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 12/254 (4%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           NY + T+   L   A   S +L K  H Q++ +G  SN FV T +I  Y  CG+   ++ 
Sbjct: 360 NYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARK 419

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
            F+ ++ K+V  +++++ GY   HGH  EALE+F  M  + V P+  T  ++        
Sbjct: 420 AFDRMREKNVKSWSAMVAGY-GMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 478

Query: 136 DLNVG-----MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGS 189
            L  G      + H   ++ G    V     ++ +  + G   E  +L   M  R +   
Sbjct: 479 LLEEGWHWFKAMSHEFDVEPG----VEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVV 534

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
           W   +       +  L   S R   ++  +N   +  + N Y   G  ++   + + M+ 
Sbjct: 535 WGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKN 594

Query: 250 KDRIEPNKVSLVSV 263
              ++P   SLV +
Sbjct: 595 SGLVKPPGFSLVDI 608


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/547 (32%), Positives = 297/547 (54%), Gaps = 42/547 (7%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           T R LKL K  HS  +    I   F++ +LI  Y+ C     +  VF+ +  K+ + +N 
Sbjct: 26  TTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLPVKNTHSWNI 85

Query: 92  LINGYVK----NHGHN---------------------------EALELFSNMYY--SNVS 118
           +I+ Y +    N  HN                           E+L +F  M    SNV 
Sbjct: 86  IISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVL 145

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
            D+FTL ++      +    +   +HG +I IG   ++I+ N+L+  Y KCG+     ++
Sbjct: 146 FDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSI 205

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F  MP+R+V SW   ++ +A +   S +  +  +F QM+ +N  +WTA+I G+ QNG  D
Sbjct: 206 FSRMPERDVVSWTSMVAAYAQA---SRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGD 262

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK---ELNHDVSLC 295
           EAL LF +M+ ++ I P+  +  SVL  C+ L  ++ GK+IHG  IR    +   ++ + 
Sbjct: 263 EALHLFEQMR-EEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFIL 321

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           NALIDMY KCG +  A  +F+     KD ++W+S+++G+  +G G E++ ++ +M+    
Sbjct: 322 NALIDMYCKCGQMRSATTLFK-GMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADI 380

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
           +P+ +T +G+LSAC  +GL++EGL I +S+   Y + P ++  A ++D+LGR  +L+ A+
Sbjct: 381 RPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAM 440

Query: 416 DFIKTMPV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
             IK  P       +WGAL+ A  +HGN ++   A + L QLEP N + YV + N+YA++
Sbjct: 441 GLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAA 500

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
            RWD   ++R +M +RGL+K   CSWI +    H F   +++H     +YE++ +L+  M
Sbjct: 501 SRWDEARQVRRLMMERGLRKEAACSWIEVRNTRHQFVAKERSHCQINEVYEVIHNLVDQM 560

Query: 535 RGAAASP 541
             +   P
Sbjct: 561 YDSGYLP 567



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 130/331 (39%), Gaps = 66/331 (19%)

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           ++P      S++  C +   L  GK +H   I+  L     L N LID YSKC S+  A 
Sbjct: 10  LDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAH 69

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           +VF      K+  +W+ I+S Y   G  +EA  L ++M     KP++++   ++S  G  
Sbjct: 70  KVFHVLPV-KNTHSWNIIISAYSRSGLFNEAHNLLDQM----PKPNLVSYNSLISGLGHH 124

Query: 373 GLINEGLEIY--------NSVINTYRIKPTTEICA------------------------- 399
           G   E L ++        N + + + +      CA                         
Sbjct: 125 GFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNII 184

Query: 400 ---CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
               ++D  G+ G+ D +      MP E     W ++V+A      S ++D A+    Q+
Sbjct: 185 IGNALIDAYGKCGEPDISFSIFSRMP-ERDVVSWTSMVAAYAQ--ASRLED-AHWLFSQM 240

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           + +N  ++ +L   +A + R D    L   M++ G+  S              F+ A   
Sbjct: 241 QEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSA-------------FTFASVL 287

Query: 517 HPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
             C+        DL LI RG     H+ + T
Sbjct: 288 SACA--------DLALIARGKEIHGHIIRST 310


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/510 (34%), Positives = 270/510 (52%), Gaps = 7/510 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+   T R+++    +H  ++ LG +   FV+  L+  +A  G    S+  F  +
Sbjct: 116 TLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEM 175

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             ++V  +N++I GY +    +EA  LF  M +  +  D FTL ++        +L VG 
Sbjct: 176 ADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGR 235

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           L+H   +  G  VD IL N+L+ MY KCG        FD MP +NV +W   +   A  G
Sbjct: 236 LVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHG 295

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
               V   R  F+QM  RN+ +W AMI+ YVQ G L E L L+  M+    I P++ +L 
Sbjct: 296 SVDAV---RDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMR-SLGITPDEFTLA 351

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNH-DVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            VL  C     L+ GK IH + +R   N   V+L N+L+DMY++CG +D A  +F +   
Sbjct: 352 GVLSACGQNGDLASGKMIHCY-VRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMP- 409

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           NK+ I+W+ I+    +HG+  E V  +  MV     PD IT VG+LSAC   GL+  G  
Sbjct: 410 NKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEY 469

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            + ++   Y ++P  E   C+VD+LGR G L +A++ IK M ++P   +WGAL+ A  +H
Sbjct: 470 YFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIH 529

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
           GN E+  L  K L++LE      +V + NL+  + +W+ + +LR +MK++G KK  G S 
Sbjct: 530 GNVEIGKLVIKQLLELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSS 589

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           I +    H F V D  H  +  IY  +D L
Sbjct: 590 IEVKNIIHEFGVEDLRHESTNEIYAAVDQL 619



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 212/467 (45%), Gaps = 73/467 (15%)

Query: 24  QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC------GQPTQSQLV 77
           +H L++    RS++   Q H+ ++  G      V+++LI +Y         G    ++ +
Sbjct: 11  RHVLELLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRL 70

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F+ I   D ++YN+L+  Y  +    EAL L   +    + P++FTL  + K    ++ +
Sbjct: 71  FDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAV 130

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
              +  HG+ +K+GFV  + +AN+L+  +   G   +    F EM  RNV SWN  I G+
Sbjct: 131 EHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGY 190

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A +G+ S                                  EA  LF EM+ +  +  + 
Sbjct: 191 AQAGEVS----------------------------------EACALFGEMRHQGLL-ADV 215

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE- 316
            +LVS+L  CSS   L  G+ +H   +      D  L NAL+DMY KCG L  A R F+ 
Sbjct: 216 FTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDM 275

Query: 317 -----------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
                                        +    ++ ++W++++S Y   G+ HE + LY
Sbjct: 276 MPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLY 335

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
           N+M  LG  PD  T+ GVLSACG++G +  G  I+  V + +   P   +   ++DM  R
Sbjct: 336 NRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFN-DPGVTLLNSLLDMYAR 394

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            GQ+D A+     MP +   S W  ++ A  MHG ++     +++++
Sbjct: 395 CGQVDTAIGLFTEMPNKNVIS-WNVIIGALAMHGRAQETVTFFRTMV 440


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 169/495 (34%), Positives = 275/495 (55%), Gaps = 9/495 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCG--QPTQSQLVFNSIQHKDVYLYNSL 92
           ++K   Q H Q+L  G I N    + L+ +YA         +++VF+SI   +  ++N++
Sbjct: 22  NMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTM 81

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           +  Y  ++    AL L+  M +++V  + +T   + K    +        IH   IK GF
Sbjct: 82  LRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGF 141

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
            ++V   NSL+ +Y   G       LF+++P R++ SWN+ I G+   G+  +   + ++
Sbjct: 142 GLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDM---AYKI 198

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
           F  M  +NV +WT MI G+V+ G   EAL L  +M L   I+P+ ++L   L  C+ L  
Sbjct: 199 FQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQM-LVAGIKPDSITLSCSLSACAGLGA 257

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI-TWSSIV 331
           L  GK IH +  + E+  D  L   L DMY KCG ++ A  VF  S   K  +  W++I+
Sbjct: 258 LEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVF--SKLEKKCVCAWTAII 315

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            G  +HGKG EA+  + +M   G  P+ IT   +L+AC  +GL  EG  ++ S+ + Y I
Sbjct: 316 GGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNI 375

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           KP+ E   C+VD++GRAG L  A +FI++MPV+P+ +IWGAL++A  +H + E+     K
Sbjct: 376 KPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGK 435

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            LI+L+P++   Y+ L+++YA++  W+ V  +R+ +K RGL   PGCS I+++G  H F 
Sbjct: 436 ILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVHEFF 495

Query: 512 VADKAHPCSVSIYEM 526
             D +HP    IY M
Sbjct: 496 AGDGSHPHIQEIYGM 510



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 136/356 (38%), Gaps = 75/356 (21%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           + S T    L+  +   + + T+Q H+ I+  G     + +  L+  YA+ G    + ++
Sbjct: 108 HNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVL 167

Query: 78  FNSIQHKDVYLYNSLINGYVKNHG-------------------------------HNEAL 106
           FN +  +D+  +N +I+GY+K                                  H EAL
Sbjct: 168 FNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEAL 227

Query: 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
            L   M  + + PD  TL+        +  L  G  IH    K    +D +L   L  MY
Sbjct: 228 SLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMY 287

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
           VKCG+  + L +F ++ ++ V +W                                  TA
Sbjct: 288 VKCGEMEKALLVFSKLEKKCVCAW----------------------------------TA 313

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG----- 281
           +I G   +G   EAL  F +MQ K  I PN ++  ++L  CS       GK +       
Sbjct: 314 IIGGLAIHGKGREALDWFTQMQ-KAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSV 372

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           + I+  + H       ++D+  + G L  AR   E      +A  W ++++   LH
Sbjct: 373 YNIKPSMEH----YGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLH 424


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 173/512 (33%), Positives = 276/512 (53%), Gaps = 43/512 (8%)

Query: 40   KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
            + SH Q    G  ++ FVS+ LI  Y+ CGQ   ++ +F+ I  ++V  + S+I GYV+N
Sbjct: 1162 RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQN 1221

Query: 100  HGHNEALELFSNMYY--------SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
               + AL LF +           +NV  D   + ++      +    +   +HG  +K G
Sbjct: 1222 EQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKG 1281

Query: 152  FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
            F   + + N+LM  Y KCG+                                 LV  S++
Sbjct: 1282 FDGSIGVGNTLMDAYAKCGQ--------------------------------PLV--SKK 1307

Query: 212  VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
            VFD M+ ++  +W +MI  Y Q+G   EAL +F  M     +  N V+L +VL  C+   
Sbjct: 1308 VFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAG 1367

Query: 272  GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
             L  GK IH   I+ +L ++V +  ++IDMY KCG ++ A++ F D    K+  +W+++V
Sbjct: 1368 ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTF-DRMKEKNVKSWTAMV 1426

Query: 332  SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            +GYG+HG+  EA+ ++ KMV  G KP+ IT V VL+AC  +GL+ EG   +N++ + Y I
Sbjct: 1427 AGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDI 1486

Query: 392  KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
            +P  E   C+VD+ GRAG L+ A + IK M ++P   +WG+L+ A  +H N ++ ++A +
Sbjct: 1487 EPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQ 1546

Query: 452  SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
             L +L+P+N   YV LSNLYA + RW  V  +R +MK+R L K PG S + + G+ H F 
Sbjct: 1547 KLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFL 1606

Query: 512  VADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            V DK HP    IY+ L+ L L ++     P++
Sbjct: 1607 VGDKEHPHHEMIYKYLEKLTLELQKIGYVPNM 1638



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 222/397 (55%), Gaps = 6/397 (1%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           ++ K  +Q H++I+  G  ++  ++ KLI  Y+  G+   + L+F  IQ+   + +N +I
Sbjct: 38  KNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLII 97

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
                N    +AL L+ NM    ++ D FT   + K       +++G ++HG  IK GF 
Sbjct: 98  RANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFS 157

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV + N+L+  Y KCG     L +F++M  RNV SW   ISG  S GD      +RR+F
Sbjct: 158 GDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQ---EARRIF 214

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D++  +NV +WTAMINGY++N   +EAL LF  MQ ++ I PN+ ++VS++  C+ +  L
Sbjct: 215 DEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN-IFPNEYTMVSLIKACTEMGIL 273

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           + G+ IH +AI+  +   V L  ALIDMYSKCGS+  A  VFE     K   TW+S+++ 
Sbjct: 274 TLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITS 332

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
            G+HG G EA+ L+++M  +  KPD IT +GVL AC     + EG   +  +   Y I P
Sbjct: 333 LGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAP 392

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSI 429
             E   C+ ++  R+  LD A    K +  +  SPSI
Sbjct: 393 IPEHYECMTELYARSNNLDEAFKSTKEVGSLANSPSI 429



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 199/417 (47%), Gaps = 55/417 (13%)

Query: 78   FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
            +  +   +V+ +NS+I    +     EAL  FS++    + P   +     K    + DL
Sbjct: 1099 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 1158

Query: 138  NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
              G + H  +   GF  D+ ++++L+ MY KCG+  +   LFDE+P RNV SW       
Sbjct: 1159 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSW------- 1211

Query: 198  ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF-------LEMQLK 250
                                       T+MI GYVQN   D AL+LF        E++  
Sbjct: 1212 ---------------------------TSMITGYVQNEQADNALLLFKDFLEEETEVEDG 1244

Query: 251  DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
            + +  + V +VSVL  CS + G    + +HGF ++K  +  + + N L+D Y+KCG    
Sbjct: 1245 NNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLV 1304

Query: 311  ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGVLSAC 369
            +++VF D    KD I+W+S+++ Y   G   EA+ +++ MV  +G + + +T+  VL AC
Sbjct: 1305 SKKVF-DWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLAC 1363

Query: 370  GRSGLINEGLEIYNSVINTYRIKPTTEIC--ACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
              +G +  G  I++ VI   ++     +C    ++DM  + G+++ A      M  E + 
Sbjct: 1364 AHAGALRAGKCIHDQVI---KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK-EKNV 1419

Query: 428  SIWGALVSASVMHGNS-EMQDLAYKSL-IQLEPENPSNYVSLSNLYASSRRWDAVAE 482
              W A+V+   MHG + E  D+ YK +   ++P    NY++  ++ A+      V E
Sbjct: 1420 KSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP----NYITFVSVLAACSHAGLVEE 1472



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 134/303 (44%), Gaps = 39/303 (12%)

Query: 38   LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
            +T+  H  ++  G   +  V   L+ AYA CGQP  S+ VF+ ++ KD   +NS+I  Y 
Sbjct: 1269 ITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYA 1328

Query: 98   KNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            ++    EALE+F  M  +  V  +  TL+ +         L  G  IH   IK+    +V
Sbjct: 1329 QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNV 1388

Query: 157  ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
             +  S++ MY KCG+       FD M ++NV SW                          
Sbjct: 1389 CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSW-------------------------- 1422

Query: 217  KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL--S 274
                    TAM+ GY  +G   EAL +F +M ++  ++PN ++ VSVL  CS   GL   
Sbjct: 1423 --------TAMVAGYGMHGRAKEALDIFYKM-VRAGVKPNYITFVSVLAACSH-AGLVEE 1472

Query: 275  GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G    +    + ++   +     ++D++ + G L+ A  + +      D + W S++   
Sbjct: 1473 GWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGAC 1532

Query: 335  GLH 337
             +H
Sbjct: 1533 RIH 1535



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 54/110 (49%)

Query: 18   YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
            Y + T+   L   A   +L+  K  H Q++ +    N  V T +I  Y  CG+   ++  
Sbjct: 1351 YNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 1410

Query: 78   FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            F+ ++ K+V  + +++ GY  +    EAL++F  M  + V P+  T  ++
Sbjct: 1411 FDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSV 1460


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/479 (32%), Positives = 276/479 (57%), Gaps = 4/479 (0%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           + N +    ++  YA  G    ++ +F+ +  KDV  +N+++  Y K    NEA+ L+ +
Sbjct: 126 VRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRD 185

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
               ++  + F+ A +  L  ++K+L +   +HG  +  GF+ +++L++S++  Y KCG+
Sbjct: 186 FRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGE 245

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                 LFDEM  +++ +W   +SG+A  GD +    +  +F QM  +N  +W+A+I+GY
Sbjct: 246 MRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMN---SASELFHQMPEKNPVSWSALISGY 302

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            +N    EAL  F +M +K  I P + +  S L  C+S+  L  GKQ+HG+ IR     +
Sbjct: 303 ARNSLGHEALDYFTKM-MKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCN 361

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
             + ++LIDMYSKCG L+ +  VF      +D + W++++S    +G G +A+ ++N MV
Sbjct: 362 TIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMV 421

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G KPD IT + +LSAC  SGL+ EGL  + ++   + + P  E  AC++D+LGRAG  
Sbjct: 422 ESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCF 481

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
              ++ ++ M  +P   +W AL+    +H N E+     + +I+L+P++ + YVSL++LY
Sbjct: 482 VELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLY 541

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           A   +W++V ++R +M ++ ++K  G SWI +  KTH F  +D+ HP    IY +L+ L
Sbjct: 542 AFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQL 600



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 203/443 (45%), Gaps = 42/443 (9%)

Query: 104 EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSL 162
           EAL     +    +         + +L  + K    G  +H      GF     I+AN L
Sbjct: 45  EALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHL 104

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + MY +CG+  E   +FD+M  RN+ SWN  ++G+A  GD   V  +R++FD+M  ++V 
Sbjct: 105 IGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGD---VNNARKLFDRMMEKDVV 161

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +W  ++  Y + G  +EA+ L+ + +  D +  N  S   VL  C  L  L   KQ+HG 
Sbjct: 162 SWNTIVLAYAKQGCFNEAIGLYRDFRRLD-MGFNAFSFAGVLILCVKLKELQLAKQVHGQ 220

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-------------SSF--------- 320
            +      ++ L ++++D YSKCG + CAR +F++             S +         
Sbjct: 221 VLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSA 280

Query: 321 --------NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
                    K+ ++WS+++SGY  +  GHEA+  + KM+  G  P+  T    L AC   
Sbjct: 281 SELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASI 340

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
             +  G +++  +I TY  +  T + + ++DM  + G L+ +      M  +    +W  
Sbjct: 341 AALKHGKQVHGYLIRTY-FRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNT 399

Query: 433 LVSASVMHGNSEMQDLAYKSLIQ--LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
           ++SA   +G+ E     +  +++  L+P+  +  V LS    S    + +   + M  D 
Sbjct: 400 MISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDH 459

Query: 491 GL---KKSPGCSWISIHGKTHCF 510
           G+   ++   C  I + G+  CF
Sbjct: 460 GVFPDQEHYAC-LIDLLGRAGCF 481



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 144/341 (42%), Gaps = 76/341 (22%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYL----- 88
           + L+L KQ H Q+L  G +SN  +S+ ++ AY+ CG+   ++ +F+ +  KD++      
Sbjct: 209 KELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIV 268

Query: 89  --------------------------YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
                                     +++LI+GY +N   +EAL+ F+ M    ++P+ +
Sbjct: 269 SGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQY 328

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T ++       I  L  G  +HG  I+  F  + I+ +SL+ MY KCG       +F  M
Sbjct: 329 TFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLM 388

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
             +                                 ++V  W  MI+   QNG  ++A+ 
Sbjct: 389 GNK---------------------------------QDVVVWNTMISALAQNGHGEKAMQ 415

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC------N 296
           +F +M ++  ++P++++ + +L  CS     SG  Q  G    K + +D  +        
Sbjct: 416 MFNDM-VESGLKPDRITFIVILSACSH----SGLVQ-EGLRFFKAMTYDHGVFPDQEHYA 469

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            LID+  + G         E+ S   D   WS+++    +H
Sbjct: 470 CLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIH 510



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 4/169 (2%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           N    T    L   A+  +LK  KQ H  ++      N  V + LI  Y+ CG    S  
Sbjct: 324 NPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCC 383

Query: 77  VFNSIQHK-DVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEI 134
           VF+ + +K DV ++N++I+   +N GH E A+++F++M  S + PD  T   I       
Sbjct: 384 VFHLMGNKQDVVVWNTMISALAQN-GHGEKAMQMFNDMVESGLKPDRITFIVILSACSHS 442

Query: 135 KDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
             +  G+     ++   G   D      L+ +  + G F E +N  + M
Sbjct: 443 GLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENM 491


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 170/525 (32%), Positives = 287/525 (54%), Gaps = 38/525 (7%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           +YT +T+   L V  T  +++  KQ H+ ++ + ++S   V   L+T Y+ CG   ++++
Sbjct: 214 HYTYSTM---LAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEI 270

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF S++ +++  + + ING+ ++    +AL+ FS M  S + P++FT + +    G +KD
Sbjct: 271 VFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKD 330

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
              G + H   IK G    V +  +++ MY   G+  E    F +M             G
Sbjct: 331 FIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQM-------------G 377

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
            A+S                   NV +W A+I GYV N  +++A+  F  M +K+ +  N
Sbjct: 378 RAAS-------------------NV-SWNALIAGYVLNEKIEKAMEAFCRM-VKEDVACN 416

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + +  ++   CSS   L+   QIH   I+  +  ++ + ++LI+ Y++CGSL+ A +VF 
Sbjct: 417 EFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFT 476

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
             S + D ++W+SI+  Y  +G   +A+ L  KM+  G+KP   T + VLSAC  SGL+ 
Sbjct: 477 QIS-DADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQ 535

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EG E + S++  Y I+P    C+C+VD+LGRAGQL+ ALDFIK + ++P+ SIW  L++A
Sbjct: 536 EGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAA 595

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
              + N +M +   + ++ LEP + + YV+LSN+YA   RW      R +M+ + + K P
Sbjct: 596 CRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEP 655

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           GCSWI ++ K + F   DKAHP    +YE L  L+  ++    SP
Sbjct: 656 GCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQLVRQIQDIGYSP 700



 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 178/526 (33%), Positives = 281/526 (53%), Gaps = 40/526 (7%)

Query: 14   TSRNYTSA--TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
            T R + S+  T    + + A  R+L   +  H+ ++ +G     + + KL++ Y  CGQ 
Sbjct: 795  THRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQL 854

Query: 72   TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
            + ++ +F+ I + ++  +  L     +   + EAL  FS M    + P+ F L +I K  
Sbjct: 855  SNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKAC 914

Query: 132  GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS------------------ 173
            G + D   G  +H + +K  F  D  + ++L+ MY KCG                     
Sbjct: 915  GHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMN 974

Query: 174  -------------ECLNLFDEMPQR----NVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
                         E LBL  +M Q     NV SWN  I+G +  GD S+V    R+    
Sbjct: 975  AMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTAN 1034

Query: 217  K-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                +V +WT++I+G+VQN    E    F EM L     P+ V++ S+LP C+++  L  
Sbjct: 1035 GVEPDVVSWTSVISGFVQNFHNHEGFDAFKEM-LDQGFCPSSVTISSLLPACTNVANLRH 1093

Query: 276  GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
            GK+IHG+A+   +  DV + +AL+DMY+KCG +  A+ +F      ++ +TW+S++ GY 
Sbjct: 1094 GKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMP-ERNTVTWNSLIFGYA 1152

Query: 336  LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
             HG  +EA+ L+N+M    +K D +T   VL+AC  +G++  G  ++  +   YRI+P  
Sbjct: 1153 NHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRL 1212

Query: 396  EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            E  AC+VD+LGRAG+L  A D IK MPVEP   +WGAL+ A   HGN E+ ++A + L +
Sbjct: 1213 EHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFE 1272

Query: 456  LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
            LEPE+P + + LSNLYA + RW   A+++ MMK R   K PGCSWI
Sbjct: 1273 LEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWI 1318



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 157/346 (45%), Gaps = 41/346 (11%)

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           + +G   H   +KIG   D  +  SL+ MY KCG+                         
Sbjct: 129 VELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGE------------------------- 163

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM-QLKDRIEP 255
                    V  + RV+D+M   +      +I+ Y +NG   +A  +F+++  +  R  P
Sbjct: 164 ---------VDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTR--P 212

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N  +  ++L  C ++  +  GKQ+H   ++ +   + ++ NAL+ +YSKCG ++ A  VF
Sbjct: 213 NHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVF 272

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
           E S   ++ I+W++ ++G+  HG   +A+  ++ M   G +P+  T   VL++CG     
Sbjct: 273 E-SLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDF 331

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            +G   +  VI    +     +   ++DM    G++D A    K M    S   W AL++
Sbjct: 332 IDGRMFHTQVIKK-GMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIA 390

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
             V++   E    A+  +++   +   N  + SN++ +   + ++A
Sbjct: 391 GYVLNEKIEKAMEAFCRMVK--EDVACNEFTYSNIFKACSSFPSLA 434



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 95/188 (50%), Gaps = 3/188 (1%)

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P++  + S L  C     +  G++ H F ++  L  D  +C +LIDMY+KCG +D A RV
Sbjct: 111 PHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRV 170

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           + D   + DA T + ++S Y  +G   +A  ++ ++  +G++P+  T   +L+ CG    
Sbjct: 171 Y-DKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISA 229

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           I EG +++  V+    +  T  +   ++ +  + G ++ A    +++      S W A +
Sbjct: 230 IQEGKQLHAHVVKMQYLSETA-VGNALLTLYSKCGMMEEAEIVFESLRQRNIIS-WTASI 287

Query: 435 SASVMHGN 442
           +    HG+
Sbjct: 288 NGFYQHGD 295


>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Glycine max]
          Length = 548

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/505 (33%), Positives = 286/505 (56%), Gaps = 8/505 (1%)

Query: 34  RSLKLTKQSHSQILSLG-HISNPFVSTKL-ITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           +S+   KQ H+ ++S G    +PF+S  L  +A +  G    S  VF+ +    ++ +N+
Sbjct: 25  KSILELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNT 84

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I GY  +    ++L +F  M    V+PD  T   + K S  + +   G+ +H   IK G
Sbjct: 85  IIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTG 144

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              D  + NSL+ MY  CG       +FD + Q+NV SWN  + G+A  G+   +V +++
Sbjct: 145 HESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCGE---MVMAQK 201

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
            F+ M  ++V +W+++I+GYV+ G+  EA+ +F +MQ     + N+V++VSV   C+ + 
Sbjct: 202 AFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGP-KANEVTMVSVSCACAHMG 260

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK-DAITWSSI 330
            L  G+ I+ + +   L   + L  +L+DMY+KCG+++ A  +F   S ++ D + W+++
Sbjct: 261 ALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAV 320

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           + G   HG   E++ L+ +M  +G  PD +T + +L+AC   GL+ E    + S ++   
Sbjct: 321 IGGLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAHGGLVKEAWFFFES-LSKCG 379

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           + PT+E  AC+VD+L RAGQL  A  FI  MP EP+ S+ GAL+S  + H N  + ++  
Sbjct: 380 MTPTSEHYACMVDVLARAGQLTTAYQFICQMPTEPTASMLGALLSGCINHRNLALAEIVG 439

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + LI+LEP +   Y+ LSN+YA  +RWD    +R  M+ RG+KKSPG S++ I G  H F
Sbjct: 440 RKLIELEPNHDGRYIGLSNMYAVDKRWDDARSMREAMERRGVKKSPGFSFVEISGVLHRF 499

Query: 511 SVADKAHPCSVSIYEMLDDLILIMR 535
              DK HP S   Y ML+ ++  M+
Sbjct: 500 IAHDKTHPDSEETYFMLNFVVYQMK 524


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/499 (34%), Positives = 265/499 (53%), Gaps = 36/499 (7%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           HS ++  G   + FV T L+  Y+  G  T ++ VF+ I  K+V  + ++I GY+++   
Sbjct: 125 HSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCF 184

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EAL LF  +    + PD FTL  I      + DL  G  I G   + G V +V +A SL
Sbjct: 185 GEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSL 244

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + MY KCG   E                                  +RRVFD M  ++V 
Sbjct: 245 VDMYAKCGSMEE----------------------------------ARRVFDGMVEKDVV 270

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W+A+I GY  NG   EAL +F EMQ ++ + P+  ++V V   CS L  L  G    G 
Sbjct: 271 CWSALIQGYASNGMPKEALDVFFEMQ-RENVRPDCYAMVGVFSACSRLGALELGNWARGL 329

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
               E   +  L  ALID Y+KCGS+  A+ VF+     KD + +++++SG  + G    
Sbjct: 330 MDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMR-RKDCVVFNAVISGLAMCGHVGA 388

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A  ++ +MV +G +PD  T VG+L  C  +GL+++G   ++ + + + + PT E   C+V
Sbjct: 389 AFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMV 448

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+  RAG L  A D I++MP+E +  +WGAL+    +H ++++ +   K LI+LEP N  
Sbjct: 449 DLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSG 508

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
           +YV LSN+Y++S RWD   ++R+ +  +G++K PGCSW+ + G  H F V D +HP S  
Sbjct: 509 HYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHK 568

Query: 523 IYEMLDDLILIMRGAAASP 541
           IYE L+ L   +R A  +P
Sbjct: 569 IYEKLESLFKDLREAGYNP 587



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 131/284 (46%), Gaps = 18/284 (6%)

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
           SS  F+    +  VF Q    N++ +  +I G V N    +A+ ++  M+ +    P+  
Sbjct: 44  SSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMR-QHGFAPDNF 102

Query: 259 SLVSVLPTCSSL-----IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           +   VL  C+ L     +GLS    +H   I+   + DV +   L+ +YSK G L  AR+
Sbjct: 103 TFPFVLKACTRLPHYFHVGLS----LHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARK 158

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VF++    K+ ++W++I+ GY   G   EA+ L+  ++ +G +PD  T+V +L AC R G
Sbjct: 159 VFDEIP-EKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVG 217

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            +  G  I   +  +  +     +   +VDM  + G ++ A      M VE     W AL
Sbjct: 218 DLASGRWIDGYMRESGSVG-NVFVATSLVDMYAKCGSMEEARRVFDGM-VEKDVVCWSAL 275

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLSNLYASSR 475
           +     +G   M   A     +++ EN  P  Y  +    A SR
Sbjct: 276 IQGYASNG---MPKEALDVFFEMQRENVRPDCYAMVGVFSACSR 316


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 173/512 (33%), Positives = 276/512 (53%), Gaps = 43/512 (8%)

Query: 40   KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
            + SH Q    G  ++ FVS+ LI  Y+ CGQ   ++ +F+ I  ++V  + S+I GYV+N
Sbjct: 2035 RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQN 2094

Query: 100  HGHNEALELFSNMYY--------SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
               + AL LF +           +NV  D   + ++      +    +   +HG  +K G
Sbjct: 2095 EQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKG 2154

Query: 152  FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
            F   + + N+LM  Y KCG+                                 LV  S++
Sbjct: 2155 FDGSIGVGNTLMDAYAKCGQ--------------------------------PLV--SKK 2180

Query: 212  VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
            VFD M+ ++  +W +MI  Y Q+G   EAL +F  M     +  N V+L +VL  C+   
Sbjct: 2181 VFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAG 2240

Query: 272  GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
             L  GK IH   I+ +L ++V +  ++IDMY KCG ++ A++ F D    K+  +W+++V
Sbjct: 2241 ALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTF-DRMKEKNVKSWTAMV 2299

Query: 332  SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            +GYG+HG+  EA+ ++ KMV  G KP+ IT V VL+AC  +GL+ EG   +N++ + Y I
Sbjct: 2300 AGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDI 2359

Query: 392  KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
            +P  E   C+VD+ GRAG L+ A + IK M ++P   +WG+L+ A  +H N ++ ++A +
Sbjct: 2360 EPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQ 2419

Query: 452  SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
             L +L+P+N   YV LSNLYA + RW  V  +R +MK+R L K PG S + + G+ H F 
Sbjct: 2420 KLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFL 2479

Query: 512  VADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            V DK HP    IY+ L+ L L ++     P++
Sbjct: 2480 VGDKEHPHHEMIYKYLEKLTLELQKIGYVPNM 2511



 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 222/397 (55%), Gaps = 6/397 (1%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           ++ K  +Q H++I+  G  ++  ++ KLI  Y+  G+   + L+F  IQ+   + +N +I
Sbjct: 38  KNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLII 97

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
                N    +AL L+ NM    ++ D FT   + K       +++G ++HG  IK GF 
Sbjct: 98  RANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFS 157

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV + N+L+  Y KCG     L +F++M  RNV SW   ISG  S GD      +RR+F
Sbjct: 158 GDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQ---EARRIF 214

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D++  +NV +WTAMINGY++N   +EAL LF  MQ ++ I PN+ ++VS++  C+ +  L
Sbjct: 215 DEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN-IFPNEYTMVSLIKACTEMGIL 273

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           + G+ IH +AI+  +   V L  ALIDMYSKCGS+  A  VFE     K   TW+S+++ 
Sbjct: 274 TLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITS 332

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
            G+HG G EA+ L+++M  +  KPD IT +GVL AC     + EG   +  +   Y I P
Sbjct: 333 LGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAP 392

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSI 429
             E   C+ ++  R+  LD A    K +  +  SPSI
Sbjct: 393 IPEHYECMTELYARSNNLDEAFKSTKEVGSLANSPSI 429



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 185/385 (48%), Gaps = 50/385 (12%)

Query: 78   FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
            +  +   +V+ +NS+I    +     EAL  FS++    + P   +     K    + DL
Sbjct: 1972 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 2031

Query: 138  NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
              G + H  +   GF  D+ ++++L+ MY KCG+  +   LFDE+P RNV SW       
Sbjct: 2032 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSW------- 2084

Query: 198  ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF-------LEMQLK 250
                                       T+MI GYVQN   D AL+LF        E++  
Sbjct: 2085 ---------------------------TSMITGYVQNEQADNALLLFKDFLEEETEVEDG 2117

Query: 251  DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
            + +  + V +VSVL  CS + G    + +HGF ++K  +  + + N L+D Y+KCG    
Sbjct: 2118 NNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLV 2177

Query: 311  ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGVLSAC 369
            +++VF D    KD I+W+S+++ Y   G   EA+ +++ MV  +G + + +T+  VL AC
Sbjct: 2178 SKKVF-DWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLAC 2236

Query: 370  GRSGLINEGLEIYNSVINTYRIKPTTEIC--ACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
              +G +  G  I++ VI   ++     +C    ++DM  + G+++ A      M  E + 
Sbjct: 2237 AHAGALRAGKCIHDQVI---KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK-EKNV 2292

Query: 428  SIWGALVSASVMHGNS-EMQDLAYK 451
              W A+V+   MHG + E  D+ YK
Sbjct: 2293 KSWTAMVAGYGMHGRAKEALDIFYK 2317



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 134/303 (44%), Gaps = 39/303 (12%)

Query: 38   LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
            +T+  H  ++  G   +  V   L+ AYA CGQP  S+ VF+ ++ KD   +NS+I  Y 
Sbjct: 2142 ITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYA 2201

Query: 98   KNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            ++    EALE+F  M  +  V  +  TL+ +         L  G  IH   IK+    +V
Sbjct: 2202 QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNV 2261

Query: 157  ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
             +  S++ MY KCG+       FD M ++NV SW                          
Sbjct: 2262 CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSW-------------------------- 2295

Query: 217  KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL--S 274
                    TAM+ GY  +G   EAL +F +M ++  ++PN ++ VSVL  CS   GL   
Sbjct: 2296 --------TAMVAGYGMHGRAKEALDIFYKM-VRAGVKPNYITFVSVLAACSH-AGLVEE 2345

Query: 275  GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G    +    + ++   +     ++D++ + G L+ A  + +      D + W S++   
Sbjct: 2346 GWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGAC 2405

Query: 335  GLH 337
             +H
Sbjct: 2406 RIH 2408



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 125/264 (47%), Gaps = 41/264 (15%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +F Q++    + W  +I     NG  ++AL+L+  M  +  I  +K +   V+  C++ +
Sbjct: 81  LFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFL 139

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE--------------- 316
            +  GK +HG  I+   + DV + N LID Y KCG    A +VFE               
Sbjct: 140 SIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVIS 199

Query: 317 ---------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
                          D   +K+ ++W+++++GY  + +  EA+ L+ +M      P+  T
Sbjct: 200 GLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYT 259

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC----ACVVDMLGRAGQLDRALDF 417
           +V ++ AC   G++  G  I++     Y IK   EI       ++DM  + G +  A++ 
Sbjct: 260 MVSLIKACTEMGILTLGRGIHD-----YAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEV 314

Query: 418 IKTMPVEPSPSIWGALVSASVMHG 441
            +TMP +  P+ W +++++  +HG
Sbjct: 315 FETMPRKSLPT-WNSMITSLGVHG 337



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 54/110 (49%)

Query: 18   YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
            Y + T+   L   A   +L+  K  H Q++ +    N  V T +I  Y  CG+   ++  
Sbjct: 2224 YNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 2283

Query: 78   FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            F+ ++ K+V  + +++ GY  +    EAL++F  M  + V P+  T  ++
Sbjct: 2284 FDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSV 2333


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 175/535 (32%), Positives = 286/535 (53%), Gaps = 40/535 (7%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC-GQ 70
           L +S     A  Q+ L +     +L    Q H+ IL LG  +NP V TK  +  +L    
Sbjct: 18  LASSTPNPRAPEQNCLALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHAT 77

Query: 71  PTQSQLVFNS---IQHKDVYLYNSLINGYVKN-HGHNEALELFSNMYYSNVSPDDFTLAT 126
              +  +F++    +  D +L+N+LI  Y +  H  ++AL L+  M +  + P+ FT   
Sbjct: 78  DYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPF 137

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           + K    ++ LN+G  +HG  +K GF  D+ + N+++ MY  C                 
Sbjct: 138 VLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCA---------------- 181

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
            G  N                 +R+VFD+M + +   W+AMI GY + G   EA+ LF E
Sbjct: 182 -GGIN----------------SARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFRE 224

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           MQ+ + + P+++++VS+L  C+ L  L  GK I  +  R E++  V + NALIDM++KCG
Sbjct: 225 MQMAE-VCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCG 283

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
            +  A ++F   +  K  ++W+S++ G  +HG+G EA  L+ +M   G  PD +  +G+L
Sbjct: 284 DISKALKLFRAMN-EKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLL 342

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           SAC  SGL+  G E + S++  Y++ P  E   C+VDM  R G +  AL+F++ MP+EP+
Sbjct: 343 SACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPN 402

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486
           P I   LVSA   HG  ++ +   K L++ EP + SNYV LSN+YA +  W+   ++R +
Sbjct: 403 PVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREV 462

Query: 487 MKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           M+ +G+KK PG + I I  + + F   DK+H     IYEM+D++   M+ +   P
Sbjct: 463 MEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRP 517


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/491 (32%), Positives = 274/491 (55%), Gaps = 6/491 (1%)

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           H+ N +    +++ Y   G   ++++VF+S+  +DV  +N+++ GY ++   +EAL  + 
Sbjct: 109 HLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYK 168

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
               S +  ++F+ A +     + + L +    HG  +  GF+ +V+L+ S++  Y KCG
Sbjct: 169 EFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCG 228

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
           +       FDEM  +++  W   ISG+A  GD      + ++F +M  +N  +WTA+I G
Sbjct: 229 QMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEA---AEKLFCEMPEKNPVSWTALIAG 285

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           YV+ G  + AL LF +M +   ++P + +  S L   +S+  L  GK+IHG+ IR  +  
Sbjct: 286 YVRQGSGNRALDLFRKM-IALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRP 344

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           +  + ++LIDMYSK GSL+ + RVF       D + W++++S    HG GH+A+ + + M
Sbjct: 345 NAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDM 404

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
           +    +P+  T+V +L+AC  SGL+ EGL  + S+   + I P  E  AC++D+LGRAG 
Sbjct: 405 IKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGC 464

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
               +  I+ MP EP   IW A++    +HGN E+   A   LI+L+PE+ + Y+ LS++
Sbjct: 465 FKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSI 524

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD--KAHPCSVSIYEMLD 528
           YA   +W+ V +LR +MK R + K    SWI I  K   F+V+D   AH     IY +L 
Sbjct: 525 YADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAFTVSDGSHAHARKEEIYFILH 584

Query: 529 DLILIMRGAAA 539
           +L  ++   A+
Sbjct: 585 NLAAVIEEEAS 595



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 183/370 (49%), Gaps = 43/370 (11%)

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSECLN 177
           P D  LA++ +  G+ K L  G  IH      GF   + +L+N L+ MY+KCGK  +   
Sbjct: 45  PFDL-LASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACK 103

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           +FD+M  RN+ SWN  +SG+  SG   ++VR+R VFD M  R+V +W  M+ GY Q+G+L
Sbjct: 104 VFDQMHLRNLYSWNNMVSGYVKSG---MLVRARVVFDSMPERDVVSWNTMVIGYAQDGNL 160

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
            EAL  + E + +  I+ N+ S   +L  C     L   +Q HG  +      +V L  +
Sbjct: 161 HEALWFYKEFR-RSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCS 219

Query: 298 LIDMYSKCGSLDCARRVFEDSSF------------------------------NKDAITW 327
           +ID Y+KCG ++ A+R F++ +                                K+ ++W
Sbjct: 220 IIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSW 279

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +++++GY   G G+ A+ L+ KM+ LG KP+  T    L A      +  G EI+  +I 
Sbjct: 280 TALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIR 339

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
           T  ++P   + + ++DM  ++G L+ +    +    +     W  ++SA   HG      
Sbjct: 340 T-NVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHG------ 392

Query: 448 LAYKSLIQLE 457
           L +K+L  L+
Sbjct: 393 LGHKALRMLD 402



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 141/345 (40%), Gaps = 66/345 (19%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            L      R L+L +Q+H Q+L  G +SN  +S  +I AYA CGQ   ++  F+ +  KD
Sbjct: 185 LLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKD 244

Query: 86  VYLYNSLIN-------------------------------GYVKNHGHNEALELFSNMYY 114
           ++++ +LI+                               GYV+    N AL+LF  M  
Sbjct: 245 IHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIA 304

Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
             V P+ FT ++    S  I  L  G  IHG  I+     + I+ +SL+ MY K G    
Sbjct: 305 LGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEA 364

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
              +F                               R+ D   + +   W  MI+   Q+
Sbjct: 365 SERVF-------------------------------RICDD--KHDCVFWNTMISALAQH 391

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS-SLIGLSGGKQIHGFAIRKELNHDVS 293
           G   +AL +  +M +K R++PN+ +LV +L  CS S +   G +      ++  +  D  
Sbjct: 392 GLGHKALRMLDDM-IKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQE 450

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
               LID+  + G      R  E+  F  D   W++I+    +HG
Sbjct: 451 HYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHG 495


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 180/518 (34%), Positives = 282/518 (54%), Gaps = 38/518 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S TV      + + + LK+ +  HS  + +G  ++  VS   I AYA CG+   ++ VF+
Sbjct: 155 SVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFD 214

Query: 80  SIQH--KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
            I    K    +NS+I GY      ++A+  F  M       D  T+ ++     + + L
Sbjct: 215 GIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVL 274

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
             G LIH   I++G   D+ + N+L+SMY KCG               ++GS        
Sbjct: 275 FHGKLIHAHGIQVGCDSDIQVINTLISMYSKCG---------------DIGS-------- 311

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                      +R +FD M  +   +WTAMI GY + GDLDEA+ LF  M+     +P+ 
Sbjct: 312 -----------ARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGE-KPDL 359

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           V+++S++  C     L  GK I  +A    L  ++ +CNALID+Y+KCGS+D AR +F  
Sbjct: 360 VTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYT 419

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               K  ++W+++++G  L+G+  EA+ L+ +MV LG KP+ IT + VL AC  +G + +
Sbjct: 420 MP-EKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEK 478

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G E +N +   Y+I P  +  +C+ D+LGR G+L  A +FI+ MP +P   IW  L+SA 
Sbjct: 479 GWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSAC 538

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
            +H N  + +     L +LEP+    YV ++N+YAS+ +WD VA +RTMMK     KSPG
Sbjct: 539 KIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSPG 598

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            S + ++GKTH F+V D+ HP  + IYE L++L L M+
Sbjct: 599 KSLVQVNGKTHEFTVEDRCHPEGLLIYETLENLALQMK 636



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 198/410 (48%), Gaps = 40/410 (9%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK ++  H+ ++     ++ FV T ++  Y  C Q   +  +F+ +  +DV  +NS+I 
Sbjct: 69  NLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMIL 128

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G+ +    +  + LF  M    +  D  T+  ++  +  +KDL +   IH   IKIG   
Sbjct: 129 GFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDT 188

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           DV ++N+ ++ Y KCG                               +F L   +  VFD
Sbjct: 189 DVSVSNTWIAAYAKCG-------------------------------EFGL---AETVFD 214

Query: 215 QMKR--RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
            + +  +   +W +MI GY       +A+  F +M L      +  +++S+L +C     
Sbjct: 215 GIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKM-LCGGFRADLSTILSLLSSCVQPEV 273

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  GK IH   I+   + D+ + N LI MYSKCG +  AR +F D+   K  ++W+++++
Sbjct: 274 LFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLF-DNMLGKTRVSWTAMIA 332

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           GY   G   EA+ L++ M  +G KPD++TI+ ++S CG++G +  G  I ++      +K
Sbjct: 333 GYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWI-DTYATANGLK 391

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
               +C  ++D+  + G +D A +   TMP E S   W  L++   ++G 
Sbjct: 392 DNLMVCNALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTLIAGCALNGE 440



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 165/356 (46%), Gaps = 40/356 (11%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +NS I   V     ++AL LF  M  + + P++ T  +++K   ++ +L    ++H   +
Sbjct: 22  WNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVV 81

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K  F  D+ +  S++ MYVKC +     NLF  MP+R+V SWN                 
Sbjct: 82  KSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWN----------------- 124

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
                            +MI G+ Q G +D  + LF EM + + I  + V+++ +  +  
Sbjct: 125 -----------------SMILGFAQLGFVDRVVSLFCEMGI-EGIRADSVTVIGLTHSAL 166

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE--DSSFNKDAIT 326
           SL  L   + IH F I+  ++ DVS+ N  I  Y+KCG    A  VF+  D    K  ++
Sbjct: 167 SLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGL-KTGVS 225

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+S+++GY    +  +AV  + KM+C G + D+ TI+ +LS+C +  ++  G  I+   I
Sbjct: 226 WNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGI 285

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
                    ++   ++ M  + G +  A      M  +   S W A+++     G+
Sbjct: 286 QV-GCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVS-WTAMIAGYAEKGD 339



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 2/146 (1%)

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
            V  W + I   V  G   +AL+LF +M+ ++ +EPN ++  SV   CS L+ L   + +
Sbjct: 18  TVAQWNSSITESVNQGYAHKALLLFRQMK-QNGLEPNNLTFPSVAKACSKLLNLKYSQIV 76

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H   ++     D+ +  +++DMY KC  L  A  +F      +D  +W+S++ G+   G 
Sbjct: 77  HTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMP-KRDVASWNSMILGFAQLGF 135

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGV 365
               V L+ +M   G + D +T++G+
Sbjct: 136 VDRVVSLFCEMGIEGIRADSVTVIGL 161


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/478 (35%), Positives = 268/478 (56%), Gaps = 15/478 (3%)

Query: 56  FVSTKLITAYALCG-QPTQSQL--VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           F  + LI A A  G  P ++    VF     +D ++ N+LI+ Y KN G ++A ++F  M
Sbjct: 206 FTYSFLIKALATAGVTPVRAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEM 265

Query: 113 YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
              +V   +  +A + +  GE+       +   +  K     D +  N+++  Y K G+ 
Sbjct: 266 TTRDVVSWNTAMAAMVR-KGEVDAARS--MFDEMPEK-----DTVSWNTMLDGYAKAGEA 317

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            E   LF  MP RNV SW+  +S +   GD  +   +R +FD+M  +N+  WT M++   
Sbjct: 318 EEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEM---ARVIFDKMPAKNLVTWTIMVSACA 374

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           Q G + EA  LF EM+ +  IE + V++VS+L  C+    L+ GK+IH    +++L    
Sbjct: 375 QKGLVGEAGRLFTEMK-EAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRST 433

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            +CNAL+DM+ KCG ++ A  +F+     KD+++W+ I+ G+ +HG G +A+ L+ +M  
Sbjct: 434 LVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQ 493

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G  PD +T++ VLSAC   GL+ EG   + ++   Y IKP  E   C+VD+LGR G + 
Sbjct: 494 QGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIK 553

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A+D IK+MP EP+  IWG+L+SA  +H N E  +LA   L  L+P N  NY  LSN+YA
Sbjct: 554 EAVDMIKSMPWEPNEVIWGSLLSACRLHKNVEYAELAANELSNLQPSNAGNYAVLSNIYA 613

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            + +W  +A+ R  MK  G +K+ G SWI +    H F+V D+ HP S  I +M+D L
Sbjct: 614 EAGKWSDMAKARVQMKGTGSQKTAGSSWIELDEAFHEFTVGDRKHPESDQISDMIDRL 671



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 182/414 (43%), Gaps = 53/414 (12%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK-----DVYLYN 90
           L+  ++ H+Q+L  G   +P  ++KLI +YAL  +    + VF++            L N
Sbjct: 117 LRHVQELHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSAAAAPPFAPSTALLAN 176

Query: 91  SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           +L+  Y  N   + AL +F +M       D FT + + K         V    H    K+
Sbjct: 177 TLLRAYALNSLPHAALAVFVDMPLRQR--DTFTYSFLIKALATAGVTPV-RAAHTHVFKL 233

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G V D  + N+L+  Y K    S+   +FDEM  R+V SWN  ++     G+   V  +R
Sbjct: 234 GSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGE---VDAAR 290

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
            +FD+M  ++  +W  M++GY + G+ +EA  LF  M  +     N VS  +V       
Sbjct: 291 SMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGR-----NVVSWSTV------- 338

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
                                       +  Y K G ++ AR +F D    K+ +TW+ +
Sbjct: 339 ----------------------------VSAYCKKGDMEMARVIF-DKMPAKNLVTWTIM 369

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           VS     G   EA  L+ +M     + D++ +V +L+AC  SG +  G  I+  V    +
Sbjct: 370 VSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHV-RQRK 428

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +  +T +C  ++DM  + G ++RA     T  VE     W  ++    MHG+ E
Sbjct: 429 LGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGE 482


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/508 (34%), Positives = 279/508 (54%), Gaps = 40/508 (7%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNSLING 95
           L  Q H QI  +G +  PFV T LI+ Y        ++ VF    H  K    YN+L++G
Sbjct: 67  LGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSG 126

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           YV N   +EA+ LF  M    V  +  TL  +        +L +G  +H  ++K GF  D
Sbjct: 127 YVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSD 186

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V + N  ++MY+KCG                                   V  ++++FD+
Sbjct: 187 VSVVNCFITMYMKCGS----------------------------------VNYAQKLFDE 212

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  + + +W AM++GY QNG     L L+  M + + + P+ V+LV VL +C++L   S 
Sbjct: 213 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDM-NGVHPDPVTLVGVLSSCANLGAQSV 271

Query: 276 GKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
           G ++  F I+      +  L NALI+MY++CG+L  A+ VF D    +  ++W++I+ GY
Sbjct: 272 GHEVE-FKIQASGFTSNPFLNNALINMYARCGNLTKAQAVF-DGMPERTLVSWTAIIGGY 329

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           G+HG G  AV L+ +M+  G +PD    V VLSAC  +GL ++GLE +  +   Y+++P 
Sbjct: 330 GMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPG 389

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E  +C+VD+LGRAG+L  A   I++MP++P  ++WGAL+ A  +H N E+ +LA++ +I
Sbjct: 390 PEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVI 449

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEPEN   YV LSN+Y+++     V  +R MMK++ LKK PGCS++ + G+ H F V D
Sbjct: 450 ELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGD 509

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASPH 542
           + H  S  IY +L++L  I+      P 
Sbjct: 510 RNHLQSDEIYRVLEELEAIIMQEFGKPE 537



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 155/354 (43%), Gaps = 48/354 (13%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   +    +  +L+L    H   L  G  S+  V    IT Y  CG    +Q +F+
Sbjct: 152 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 211

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  K +  +N++++GY +N      LEL+ NM  + V PD  TL  +      +   +V
Sbjct: 212 EMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSV 271

Query: 140 GMLIHGLSIKI---GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           G   H +  KI   GF  +  L N+L++MY +CG  ++   +FD MP+R + SW      
Sbjct: 272 G---HEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSW------ 322

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                       TA+I GY  +G  + A+ LF EM ++  IEP+
Sbjct: 323 ----------------------------TAIIGGYGMHGHGEIAVQLFKEM-IRSGIEPD 353

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRK---ELNHDVSLCNALIDMYSKCGSLDCARR 313
             + V VL  CS   GL+  + +  F + K   +L       + ++D+  + G L  A+ 
Sbjct: 354 GTAFVCVLSACSH-AGLT-DQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQT 411

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           + E      D   W +++    +H     A L + +++ L  +P+ I    +LS
Sbjct: 412 LIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIEL--EPENIGYYVLLS 463


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 179/566 (31%), Positives = 296/566 (52%), Gaps = 72/566 (12%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SL+L K  H+QI+  G  ++ FVST L+  YA  G    S  VFN +   +   +N++I+
Sbjct: 182 SLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMIS 241

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G   N  H EA +LF  M     +P+ +TL ++SK  G++ D+N+G  +   + ++G   
Sbjct: 242 GCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEG 301

Query: 155 DVILA---------------------------------NSLMSMYVKCGKFSECLNLFDE 181
           +V++                                  N+++S Y + G   E L L+ +
Sbjct: 302 NVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQ 361

Query: 182 MPQRNVGS-------------------WNVRISGHASSGDFSLVVRS------------- 209
           M Q  + S                   +   + G        L+V S             
Sbjct: 362 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 421

Query: 210 -----RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
                R+VFD+M+ R++ +WT ++  Y Q+   +EAL  F  M+ ++   PN+ +  SVL
Sbjct: 422 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMR-EEGFAPNQFTFSSVL 480

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            +C+SL  L  G+Q+HG   +  L+ +  + +ALIDMY+KCGS+  A +VF+  S N D 
Sbjct: 481 ISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-NPDI 539

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           ++W++I+SGY  HG   +A+ L+ +M   G K + +T++ VL AC   G++ EGL  +  
Sbjct: 540 VSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQ 599

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           + + Y + P  E  AC++D+LGR G+LD A++FI+ MP+EP+  +W  L+    +HGN E
Sbjct: 600 MEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVE 659

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           + ++A + ++ + PE  + YV LSN Y  +  ++    LR +MKD+G+KK PG SWIS+ 
Sbjct: 660 LGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 719

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDL 530
           G+ H F   D+ HP    IY  L++L
Sbjct: 720 GRVHKFYSGDQQHPQKKEIYVKLEEL 745



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 189/461 (40%), Gaps = 53/461 (11%)

Query: 15  SRNYTSATVQHFLQV---SATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT-------A 64
           S  Y    VQ  + V    A   S++  K  H  +L     SN F    L+         
Sbjct: 56  SETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLK----SN-FEDKDLMVLFNHAAHV 110

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y+ C +   +  VF+ +  ++V+ +  +I G  ++    +  + F  M  S + PD F  
Sbjct: 111 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 170

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           + I +    +  L +G ++H   +  GF   + ++ SL++MY K G   +   +F+ M +
Sbjct: 171 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE 230

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
            N  SWN  ISG  S                                  NG   EA  LF
Sbjct: 231 HNQVSWNAMISGCTS----------------------------------NGLHLEAFDLF 256

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
           + M+      PN  +LVSV      L+ ++ GK++   A    +  +V +  ALIDMYSK
Sbjct: 257 VRMK-NGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSK 315

Query: 305 CGSLDCARRVFEDSSFNKDAIT-WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           CGSL  AR VF+ +  N    T W++++SGY   G   EA+ LY +M   G   D+ T  
Sbjct: 316 CGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYC 375

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            V +A   S  +  G  ++  V+          +   + D   + G L+        M  
Sbjct: 376 SVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRME- 434

Query: 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
           E     W  LV+A       E + LA   L++ E   P+ +
Sbjct: 435 ERDIVSWTTLVTAYSQSSLGE-EALATFCLMREEGFAPNQF 474



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 136/280 (48%), Gaps = 12/280 (4%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VFD+M +RNV++WT MI G  ++G   +    F EM L   I P+K +  +++ +C  L 
Sbjct: 123 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEM-LNSGILPDKFAYSAIIQSCIGLD 181

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  GK +H   + +     + +  +L++MY+K GS++ +  VF   +   + ++W++++
Sbjct: 182 SLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMT-EHNQVSWNAMI 240

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           SG   +G   EA  L+ +M      P++ T+V V  A G+   +N G E+ N   +   I
Sbjct: 241 SGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCA-SELGI 299

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSEMQDLAY 450
           +    +   ++DM  + G L  A     T  +    +  W A++S     G S+     Y
Sbjct: 300 EGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELY 359

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
             + Q       N ++ S+LY     ++A+A  +++   R
Sbjct: 360 VQMCQ-------NGIT-SDLYTYCSVFNAIAASKSLQFGR 391


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 179/522 (34%), Positives = 278/522 (53%), Gaps = 51/522 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A  ++L L K+ H  +   G +SNPFV   L+  Y  C     +  +F+  
Sbjct: 48  TLASVLPACARLQNLNLGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGF 107

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             K+V  YN++I GY +N    +A ELF  M                +L G+        
Sbjct: 108 SVKNVVSYNTMIVGYCENGNVEKAKELFDQM----------------ELVGK-------- 143

Query: 142 LIHGLSIKIGFVVDVILANSLMSMY----VKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
                        D I  NS++S Y    +KC         FD + +R+  +WNV ISG+
Sbjct: 144 -------------DTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLISGY 190

Query: 198 ASSGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           A       +   + +  +MK      NVY W  +I+G+V+NG  + AL LF EMQ    +
Sbjct: 191 ACCNQLENI---QNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSS-L 246

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
            P+  ++  +LP C+ L  ++ GKQ+H  +IR+    DV +  AL+DMY+KCGS+  A +
Sbjct: 247 RPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQ 306

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           V+   S N + ++ +++++ Y +HG G E + L+  M+  G +PD +T + VLS+C  +G
Sbjct: 307 VYNRIS-NPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAG 365

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            +  G E ++ ++  Y + P+ +   C+VD+L RAG+LD A + +K +P +P   +WGAL
Sbjct: 366 AVETGHEFFD-LMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGAL 424

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
           +   V+ GN E+ ++A +SLI+LEP N  NYV L+NLYA + RW  +   R M+KDRG+ 
Sbjct: 425 LGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMH 484

Query: 494 KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           KSPGCSWI      H F   DK+H  +  IY  LD+L   MR
Sbjct: 485 KSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMR 526



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 163/362 (45%), Gaps = 48/362 (13%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           ++++I G+ +N    EALEL   M  +   P+  TLA++      +++LN+G  IHG   
Sbjct: 14  WSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIHGYVT 73

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           + GF+ +  + N L+ +Y +C      L +F     +NV S+N  I G+  +G+   V +
Sbjct: 74  RHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGN---VEK 130

Query: 209 SRRVFDQMK--RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
           ++ +FDQM+   ++  +W +MI+GY  N                             L  
Sbjct: 131 AKELFDQMELVGKDTISWNSMISGYADN-----------------------------LLK 161

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKD 323
           C  L       +    A       D +  N LI  Y+ C  L+  + + +      F  +
Sbjct: 162 CEDL-------KAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPN 214

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY- 382
             TW+ I+SG+  +G    A+ L+ +M     +PDI T+  +L AC R   I  G +++ 
Sbjct: 215 VYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHA 274

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           +S+   Y +     I A +VDM  + G +  A+     +   P+     A+++A  MHG+
Sbjct: 275 HSIRQGYELD--VHIGAALVDMYAKCGSIKHAMQVYNRIS-NPNLVSQNAMLTAYAMHGH 331

Query: 443 SE 444
            +
Sbjct: 332 GD 333



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 12/233 (5%)

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
           + N+ +W+A+I G+ QNG   EAL L   MQ     EPN  +L SVLP C+ L  L+ GK
Sbjct: 8   KPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAG-FEPNARTLASVLPACARLQNLNLGK 66

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +IHG+  R     +  + N L+D+Y +C  +  A ++F   S  K+ +++++++ GY  +
Sbjct: 67  EIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSV-KNVVSYNTMIVGYCEN 125

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN--TYRIKPTT 395
           G   +A  L+++M  +G   D I+   ++S    + L  E L+      +  T R   T 
Sbjct: 126 GNVEKAKELFDQMELVGK--DTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATW 183

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMP---VEPSPSIWGALVSASVMHGNSEM 445
            +   ++       QL+   + I+ M     EP+   W  ++S  V +G++E+
Sbjct: 184 NV---LISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNEL 233


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/508 (34%), Positives = 277/508 (54%), Gaps = 39/508 (7%)

Query: 26  FLQVSATHRSLKLT-KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           F+  S    SL ++ +Q H  ++  G  + PFV T LI+ Y  CG    ++ VF    H 
Sbjct: 55  FILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHS 114

Query: 85  DVY--LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
                 YN+LI+GY  N   ++A  +F  M  + VS D  T+  +  L    + L +G  
Sbjct: 115 SQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRS 174

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +HG  +K G   +V + NS ++MY+KCG                                
Sbjct: 175 LHGECVKGGTYSEVAVLNSFITMYMKCGS------------------------------- 203

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V   RR+FD+M  + +  W A+I+GY QNG   + L LF +M+    + P+  +LVS
Sbjct: 204 ---VESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMK-SSGVCPDPFTLVS 259

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL +C+ L     G+++           +V L NALI MY++CG+L  AR VF D    K
Sbjct: 260 VLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVF-DIMPVK 318

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
             ++W++++  YG+HG G   + L++ M+  G +PD    V VLSAC  SGL ++GLE++
Sbjct: 319 SLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELF 378

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            ++   Y+++P  E  +C+VD+LGRAG+LD A++FI +MPVEP  ++WGAL+ A  +H N
Sbjct: 379 RAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKN 438

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
            +M +LA+  +I+ EP N   YV +SN+Y+ S+  + +  +R MM++R  +K PG S++ 
Sbjct: 439 VDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVE 498

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLDDL 530
             GK H F   D++H  +  ++ MLD+L
Sbjct: 499 HKGKVHLFLAGDRSHEQTEEVHRMLDEL 526



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 140/344 (40%), Gaps = 46/344 (13%)

Query: 14  TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73
           T  +  S T+   + +      L L +  H + +  G  S   V    IT Y  CG    
Sbjct: 147 TGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVES 206

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
            + +F+ +  K +  +N++I+GY +N    + LELF  M  S V PD FTL ++      
Sbjct: 207 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAH 266

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           +    +G  +  L    GF  +V L+N+L+SMY +CG  ++   +FD MP +++ SW   
Sbjct: 267 LGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSW--- 323

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                                          TAMI  Y  +G  +  L LF +M +K  I
Sbjct: 324 -------------------------------TAMIGCYGMHGMGETGLTLFDDM-IKRGI 351

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL------CNALIDMYSKCGS 307
            P+    V VL  CS       G    G  + + +  +  L       + L+D+  + G 
Sbjct: 352 RPDGAVFVMVLSACS-----HSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 406

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           LD A    +      D   W +++    +H     A L + K++
Sbjct: 407 LDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVI 450



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 14/238 (5%)

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +W   +          E++ L+  M L+    P+  S   +L +C+SL     G+Q+H  
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSM-LRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCH 75

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD-AITWSSIVSGYGLHGKGH 341
            IR     +  +  ALI MY KCG ++ AR+VFE++  +    + +++++SGY  + K  
Sbjct: 76  VIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN--TYRIKPTTEICA 399
           +A  ++ +M   G   D +TI+G++  C     +  G  ++   +   TY       +  
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTY---SEVAVLN 192

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             + M  + G ++        MPV+   + W A++S    +G      LAY  L   E
Sbjct: 193 SFITMYMKCGSVESGRRLFDEMPVKGLIT-WNAVISGYSQNG------LAYDVLELFE 243


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 172/494 (34%), Positives = 271/494 (54%), Gaps = 13/494 (2%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F+ T LIT Y   G  T ++ + +++  +    +N++I+GY+ +    +AL LF  M 
Sbjct: 222 NEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMR 281

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD----VILANSLMSMYVKC 169
              V  D+ T  ++     +     +G  +H   +K     D    + + N+L+++Y K 
Sbjct: 282 LLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKY 341

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           GK      +F EMP +++ +WN  +SG+ ++G       ++  F QM  +N+  WT MI+
Sbjct: 342 GKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRME---EAKSFFAQMPEKNLLTWTVMIS 398

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           G  QNG  ++AL LF +M+L D  EPN  +    +  CS L  L  G+Q+H   +   L 
Sbjct: 399 GLAQNGFGEQALKLFNQMKL-DGYEPNDYAFAGAITACSVLGALENGRQLHAQIV--HLG 455

Query: 290 HD--VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
           HD  +S+ NA+I MY++CG ++ AR +F    F  D ++W+S+++  G HG G +A+ LY
Sbjct: 456 HDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPVSWNSMIAALGQHGHGVKAIELY 514

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            +M+  G  PD  T + VLSAC  +GL+ EG   +NS++  Y I P  +  A ++D+  R
Sbjct: 515 EQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCR 574

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           AG+   A + I +MP E    IW AL++    HGN ++   A + L +L P++   YV L
Sbjct: 575 AGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLL 634

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           SN+YAS  RW+ VA  R +M+DRG+KK P CSW  +  K H F V D  HP  +SIY  L
Sbjct: 635 SNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYL 694

Query: 528 DDLILIMRGAAASP 541
           + L L M+     P
Sbjct: 695 EKLNLEMKKIGYIP 708



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 213/467 (45%), Gaps = 100/467 (21%)

Query: 59  TKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYVK-NHGHNEALELFSNMYYS 115
           T LITAY+  G    ++ +FN   +  +D   YN++I GY   N GH+ A+ELF  M ++
Sbjct: 83  TTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHS-AIELFRAMRWA 141

Query: 116 NVSPDDFTLATISKLSGEI--KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
           N  PDDFT A++   S  I   +   G + HG  +K G  +   + N+L+S+YVKC    
Sbjct: 142 NFQPDDFTFASVLSASTLIFYDERQCGQM-HGTVVKFGIEIFPAVLNALLSVYVKC---- 196

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
                                +        SL+  +R++FD+M +RN + WT +I GYV+
Sbjct: 197 ---------------------ASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVR 235

Query: 234 NGDL-------------------------------DEALVLFLEMQLKDRIEPNKVSLVS 262
           NGDL                               ++AL LF +M+L   ++ ++ +  S
Sbjct: 236 NGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLG-VQVDESTYTS 294

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHD----VSLCNALIDMYSKCGSLDCARRVF--- 315
           V+  C+       GKQ+H + ++ ELN D    +S+ N LI +Y K G +D AR++F   
Sbjct: 295 VISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEM 354

Query: 316 ----------------------EDSSF-----NKDAITWSSIVSGYGLHGKGHEAVLLYN 348
                                 E  SF      K+ +TW+ ++SG   +G G +A+ L+N
Sbjct: 355 PVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFN 414

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
           +M   G +P+     G ++AC   G +  G +++  +++      T  +   ++ M  R 
Sbjct: 415 QMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGH-DSTLSVGNAMITMYARC 473

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           G ++ A     TMP    P  W ++++A   HG+       Y+ +++
Sbjct: 474 GIVEAARTMFLTMPF-VDPVSWNSMIAALGQHGHGVKAIELYEQMLK 519



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 159/364 (43%), Gaps = 58/364 (15%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +HG  I  GF +   + N L+ +Y K   F     LFDE+PQ +V +    I+ +++ G+
Sbjct: 35  VHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGN 94

Query: 203 FSLVVRSRRVFDQ--MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
             +   +R +F++  +  R+   + AMI GY    D   A+ LF  M+  +  +P+  + 
Sbjct: 95  LKM---AREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWAN-FQPDDFTF 150

Query: 261 VSVLPTCSSLIGLSGGK--QIHGFAIRKELNHDVSLCNALIDMYSKCG---------SLD 309
            SVL + S+LI     +  Q+HG  ++  +    ++ NAL+ +Y KC           + 
Sbjct: 151 ASVL-SASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMA 209

Query: 310 CARRVFE------------------------------DSSFNKDAITWSSIVSGYGLHGK 339
            AR++F+                              D+   +  I W++++SGY  HG 
Sbjct: 210 SARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGL 269

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             +A+ L+ KM  LG + D  T   V+SAC   G    G +++  ++    + P  +   
Sbjct: 270 FEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKN-ELNPDRDFLL 328

Query: 400 CV----VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            V    + +  + G++D A      MPV+   + W  L+S  V  G  E      KS   
Sbjct: 329 SVGNTLITLYWKYGKVDGARKIFYEMPVKDIIT-WNTLLSGYVNAGRMEEA----KSFFA 383

Query: 456 LEPE 459
             PE
Sbjct: 384 QMPE 387



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 8/180 (4%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  +Q H+QI+ LGH S   V   +IT YA CG    ++ +F ++   D   +NS+I 
Sbjct: 440 ALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIA 499

Query: 95  GYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKL---SGEIKDLNVGMLIHGLSIKI 150
             +  HGH  +A+EL+  M    + PD  T  T+      +G +++ N     + +    
Sbjct: 500 A-LGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGN--RYFNSMLENY 556

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRS 209
           G          ++ ++ + GKFS+  N+ D MP +     W   ++G  + G+  L + +
Sbjct: 557 GIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEA 616


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 155/479 (32%), Positives = 276/479 (57%), Gaps = 4/479 (0%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           + N +    ++  YA  G    ++ +F+ +  KDV  +N+++  Y K    NEA+ L+ +
Sbjct: 126 VRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRD 185

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
               ++  + F+ A +  L  ++K+L +   +HG  +  GF+ +++L++S++  Y KCG+
Sbjct: 186 FRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGE 245

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                 LFDEM  +++ +W   +SG+A  GD +    +  +F QM  +N  +W+A+I+GY
Sbjct: 246 MRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMN---SASELFHQMPEKNPVSWSALISGY 302

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            +N    EAL  F +M +K  I P + +  S L  C+S+  L  GKQ+HG+ IR     +
Sbjct: 303 ARNSLGHEALDYFTKM-MKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCN 361

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
             + ++LIDMYSKCG L+ +  VF      +D + W++++S    +G G +A+ ++N MV
Sbjct: 362 TIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMV 421

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G KPD IT + +LSAC  SGL+ EGL  + ++   + + P  E  +C++D+LGRAG  
Sbjct: 422 ESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCF 481

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
              ++ ++ M  +P   +W AL+    +H N E+     + +I+L+P++ + YVSL++LY
Sbjct: 482 VELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLY 541

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           A   +W++V ++R +M ++ ++K  G SWI +  KTH F  +D+ HP    IY +L+ L
Sbjct: 542 AFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQL 600



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 203/443 (45%), Gaps = 42/443 (9%)

Query: 104 EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSL 162
           EAL     +    V         + +L  + K    G  +H      GF     I+AN L
Sbjct: 45  EALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHL 104

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + MY +CG+  E   +FD+M  RN+ SWN  ++G+A  GD   V  +R++FD+M  ++V 
Sbjct: 105 IGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGD---VNNARKLFDRMMEKDVV 161

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +W  ++  Y + G  +EA+ L+ + +  D +  N  S   VL  C  L  L   KQ+HG 
Sbjct: 162 SWNTIVLAYAKQGCFNEAIGLYRDFRRLD-MGFNAFSFAGVLILCVKLKELQLAKQVHGQ 220

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-------------SSF--------- 320
            +      ++ L ++++D Y+KCG + CAR +F++             S +         
Sbjct: 221 VLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSA 280

Query: 321 --------NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
                    K+ ++WS+++SGY  +  GHEA+  + KM+  G  P+  T    L AC   
Sbjct: 281 SELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASI 340

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
             +  G +++  +I TY  +  T + + ++DM  + G L+ +      M  +    +W  
Sbjct: 341 AALKHGKQVHGYLIRTY-FRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNT 399

Query: 433 LVSASVMHGNSEMQDLAYKSLIQ--LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
           ++SA   +G+ E     +  +++  L+P+  +  V LS    S    + +   + M  D 
Sbjct: 400 MISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDH 459

Query: 491 GL---KKSPGCSWISIHGKTHCF 510
           G+   ++   C  I + G+  CF
Sbjct: 460 GVFPDQEHYSC-LIDLLGRAGCF 481



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 145/341 (42%), Gaps = 76/341 (22%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYL----- 88
           + L+L KQ H Q+L  G +SN  +S+ ++ AYA CG+   ++ +F+ +  KD++      
Sbjct: 209 KELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIV 268

Query: 89  --------------------------YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
                                     +++LI+GY +N   +EAL+ F+ M    ++P+ +
Sbjct: 269 SGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQY 328

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T ++       I  L  G  +HG  I+  F  + I+ +SL+ MY KCG       +F  M
Sbjct: 329 TFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLM 388

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
             +                                 ++V  W  MI+   QNG  ++A+ 
Sbjct: 389 GNK---------------------------------QDVVVWNTMISALAQNGHGEKAMQ 415

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC------N 296
           +F +M ++  ++P++++ + +L  CS     SG  Q  G    K + +D  +       +
Sbjct: 416 MFNDM-VESGLKPDRITFIVILSACSH----SGLVQ-EGLRFFKAMTYDHGVFPDQEHYS 469

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            LID+  + G         E+ S   D   WS+++    +H
Sbjct: 470 CLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIH 510



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 4/169 (2%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           N    T    L   A+  +LK  KQ H  ++      N  V + LI  Y+ CG    S  
Sbjct: 324 NPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCC 383

Query: 77  VFNSIQHK-DVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEI 134
           VF+ + +K DV ++N++I+   +N GH E A+++F++M  S + PD  T   I       
Sbjct: 384 VFHLMGNKQDVVVWNTMISALAQN-GHGEKAMQMFNDMVESGLKPDRITFIVILSACSHS 442

Query: 135 KDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
             +  G+     ++   G   D    + L+ +  + G F E +N  + M
Sbjct: 443 GLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENM 491


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 183/521 (35%), Positives = 288/521 (55%), Gaps = 38/521 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  A    +KL +Q HS ++ +    + FV   LI  Y+ CG    +++VF+ +
Sbjct: 291 TLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLM 350

Query: 82  QHKDVYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
             KDV ++NS+I+GY  N G++ EA+ LF+NMY   +  +  TL+TI K +   +     
Sbjct: 351 PXKDVIVWNSIISGY-SNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFC 409

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             +H +SIK G+  D  +ANSL+  Y KC                               
Sbjct: 410 EQVHTISIKSGYQYDGYVANSLLDSYGKC------------------------------- 438

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
               L+  + +VF+     ++ A+T+MI  Y Q G  +EAL ++L MQ +D I+P+    
Sbjct: 439 ---CLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRD-IKPDAFIF 494

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            S+   C++L     GKQIH   ++  L  DV   N+L++MY+KCGS+D A  +F + S+
Sbjct: 495 SSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISW 554

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            +  ++WS+++ G   HG G +A+ L+ +M+  G  P+ IT+V VLSAC  +GL+ E   
Sbjct: 555 -RGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARR 613

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            +  +   + I PT E  AC+VD+LGR G+LD A+  +K MP + S ++WGAL+ A+ +H
Sbjct: 614 FFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIH 673

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
            N E+   A + L+ LEPE    ++ L+N+YAS+  WD VA++R  MK+  +KK PG SW
Sbjct: 674 KNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSW 733

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           I +  K + F V D++HP S  IY  LDDL   +  A   P
Sbjct: 734 IELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVP 774



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 129/265 (48%), Gaps = 36/265 (13%)

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           L + M  + +SP++F+L+T+      ++D N GM +HG  IK+G+  D   AN+L+ MY 
Sbjct: 175 LVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYA 234

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           K G     + +F E+P+ ++ SWN                                  A+
Sbjct: 235 KSGCPEAAIAVFYEIPKPDIVSWN----------------------------------AV 260

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I G V +   D AL L  +M    R+ P+  +L S L  C+++  +  G+Q+H   ++ +
Sbjct: 261 IAGCVLHEKNDLALKLLGKMG-SYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMD 319

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
           +  D  +   LIDMYSKCG L  AR VF D    KD I W+SI+SGY   G   EA+ L+
Sbjct: 320 MEPDSFVGVGLIDMYSKCGLLQDARMVF-DLMPXKDVIVWNSIISGYSNCGYDIEAMSLF 378

Query: 348 NKMVCLGSKPDIITIVGVLSACGRS 372
             M   G + +  T+  +L +   S
Sbjct: 379 TNMYKEGLEFNQTTLSTILKSTAGS 403



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 140/326 (42%), Gaps = 44/326 (13%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            +   T+   L+ +A  ++    +Q H+  +  G+  + +V+  L+ +Y  C     +  
Sbjct: 387 EFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAK 446

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF     +D+  Y S+I  Y +     EAL+++  M   ++ PD F  +++      +  
Sbjct: 447 VFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSA 506

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
              G  IH   +K G + DV   NSL++MY KCG   +   +F+E+  R + SW      
Sbjct: 507 YEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSW------ 560

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                       +AMI G  Q+G   +AL LF +M LK+ I PN
Sbjct: 561 ----------------------------SAMIGGLAQHGHGRKALQLFYQM-LKNGILPN 591

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            ++LVSVL  C+    ++  ++  G     F I     H       ++D+  + G LD A
Sbjct: 592 HITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYA----CMVDILGRVGRLDEA 647

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLH 337
             + ++  F   A  W +++    +H
Sbjct: 648 MVLVKEMPFQASAAVWGALLGAARIH 673



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 42/267 (15%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL------------------- 249
           +R++       ++ +W+A+I+GYVQNG  +EAL+ + EM L                   
Sbjct: 101 ARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSL 160

Query: 250 --------------------KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
                                  I PN+ SL +VL  C+ L   + G ++HG+ I+   +
Sbjct: 161 TRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYD 220

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            D    NAL+DMY+K G  + A  VF +     D ++W+++++G  LH K   A+ L  K
Sbjct: 221 SDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLHEKNDLALKLLGK 279

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M      P + T+   L AC   GL+  G +++++++    ++P + +   ++DM  + G
Sbjct: 280 MGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKM-DMEPDSFVGVGLIDMYSKCG 338

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSA 436
            L  A      MP +    +W +++S 
Sbjct: 339 LLQDARMVFDLMPXK-DVIVWNSIISG 364



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 44/194 (22%)

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           +++YSKC     AR++  DSS   D ++WS+++SGY  +G+G EA+L Y +M  LG+K +
Sbjct: 89  VNLYSKCQCFRVARKLVIDSS-EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGN 147

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVI-----------NTYRIKPTTEICA-------- 399
             T   VL  C  +  +  G +I+   +           N + +      CA        
Sbjct: 148 EFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYG 207

Query: 400 --------------------CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
                                ++DM  ++G  + A+     +P +P    W A+++  V+
Sbjct: 208 MKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVL 266

Query: 440 HGNSEMQDLAYKSL 453
           H   E  DLA K L
Sbjct: 267 H---EKNDLALKLL 277


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 267/481 (55%), Gaps = 9/481 (1%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T ++  Y   G    ++ VF  +  K   ++N++I+GYV +    EA ELF  M    V 
Sbjct: 232 TTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVP 291

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKI--GFVVDVILA--NSLMSMYVKCGKFSE 174
            D+FT  ++      +     G  +HG  I++   FV +  L   N+L++ Y KCG  + 
Sbjct: 292 LDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAV 351

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
              +FD M  ++V SWN  +SG+  S   S + ++  VF++M  +N  +W  M++GYV  
Sbjct: 352 ARRIFDNMTLKDVVSWNTILSGYVES---SCLDKAVEVFEEMPYKNELSWMVMVSGYVHG 408

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G  ++AL LF +M+  + ++P   +    +  C  L  L  GKQ+HG  ++       S 
Sbjct: 409 GFAEDALKLFNKMR-SENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSA 467

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            NALI MY++CG++  A  +F     N D+++W++++S  G HG G EA+ L+++MV  G
Sbjct: 468 GNALITMYARCGAVKEAHLMFLVMP-NIDSVSWNAMISALGQHGHGREALELFDRMVAEG 526

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
             PD I+ + VL+AC  SGL++EG   + S+   + I P  +    ++D+LGRAG++  A
Sbjct: 527 IYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEA 586

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            D IKTMP EP+PSIW A++S     G+ E+   A   L ++ P++   Y+ LSN Y+++
Sbjct: 587 RDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAA 646

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
             W   A +R +M+DRG+KK PGCSWI    K H F V D  HP +  +Y+ L+ +   M
Sbjct: 647 GCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKM 706

Query: 535 R 535
           R
Sbjct: 707 R 707



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 209/431 (48%), Gaps = 50/431 (11%)

Query: 55  PFVSTKLITAYALCGQPTQSQLVFNSIQ--HKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           P  +T L+ AYA   +   +   F+++    +D  L+N++I+ Y +      A+ +F ++
Sbjct: 88  PVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSL 147

Query: 113 YYS-NVSPDDFTLATISKLSGEIKDLNVGML--IHGLSIKIGFVVDVILANSLMSMYVKC 169
             S ++ PDD++   +    G + +++V     +H   +K G    + + N+L+++Y+KC
Sbjct: 148 LASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKC 207

Query: 170 GK---FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
                  +   + DEMP ++  +W   + G+   GD   V  +R VF+++  +    W A
Sbjct: 208 ESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGD---VGAARSVFEEVDGKFDVVWNA 264

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           MI+GYV +G   EA  LF  M L +R+  ++ +  SVL  C+++   + GK +HG  IR 
Sbjct: 265 MISGYVHSGMAVEAFELFRRMVL-ERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRL 323

Query: 287 ELNH----DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY-------- 334
           + N      + + NAL+  YSKCG++  ARR+F++ +  KD ++W++I+SGY        
Sbjct: 324 QPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTL-KDVVSWNTILSGYVESSCLDK 382

Query: 335 ----------------------GLHGK-GHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
                                  +HG    +A+ L+NKM     KP   T  G ++ACG 
Sbjct: 383 AVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGE 442

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
            G +  G +++  ++     + +      ++ M  R G +  A      MP   S S W 
Sbjct: 443 LGALKHGKQLHGHIVQ-LGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVS-WN 500

Query: 432 ALVSASVMHGN 442
           A++SA   HG+
Sbjct: 501 AMISALGQHGH 511



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 138/335 (41%), Gaps = 81/335 (24%)

Query: 40  KQSHSQILSLGHISNPF----VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           K  H QI+ L     P     V+  L+T Y+ CG    ++ +F+++  KDV  +N++++G
Sbjct: 314 KSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSG 373

Query: 96  YVKN-----------------------------HG--HNEALELFSNMYYSNVSPDDFTL 124
           YV++                             HG    +AL+LF+ M   NV P D+T 
Sbjct: 374 YVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTY 433

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           A      GE+  L  G  +HG  +++GF       N+L++MY +CG   E   +F  MP 
Sbjct: 434 AGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPN 493

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
            +  SWN                                  AMI+   Q+G   EAL LF
Sbjct: 494 IDSVSWN----------------------------------AMISALGQHGHGREALELF 519

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA------L 298
             M + + I P+++S ++VL  C+       G    GF   + +  D  +         L
Sbjct: 520 DRM-VAEGIYPDRISFLTVLTACN-----HSGLVDEGFRYFESMKRDFGIIPGEDHYTRL 573

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           ID+  + G +  AR + +   F      W +I+SG
Sbjct: 574 IDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSG 608



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 18/254 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  KQ H  I+ LG   +      LIT YA CG   ++ L+F  + + D   +N++I+
Sbjct: 445 ALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMIS 504

Query: 95  GYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGF 152
             +  HGH  EALELF  M    + PD  +  T+         ++ G      +    G 
Sbjct: 505 A-LGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGI 563

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISGHASSGDFSLVVRSRR 211
           +        L+ +  + G+  E  +L   MP     S W   +SG  +SGD  L   +  
Sbjct: 564 IPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAAD 623

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGD-LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
              +M  ++   +  + N Y   G  +D A V  L   ++DR        V   P CS  
Sbjct: 624 QLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKL---MRDRG-------VKKEPGCS-- 671

Query: 271 IGLSGGKQIHGFAI 284
             +  G ++H F +
Sbjct: 672 -WIEAGNKVHVFLV 684


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 163/499 (32%), Positives = 280/499 (56%), Gaps = 14/499 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQP--TQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ  S +   G + +PF + ++I+  A+  Q   + + L+F S+  +  +++N+++  + 
Sbjct: 30  KQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFT 89

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
                   L L+  M  +   P+++T + + +   ++ DL+ G+L+H  ++++G+     
Sbjct: 90  DKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDF 149

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + N L+ +Y  C        LFD    R+V +W   I+G+A SG    VV +R++FD+M 
Sbjct: 150 VQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQ---VVVARQLFDEMP 206

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            +N  +W+AMI GY Q G   EAL LF +MQ+     PN  ++V  L  C+ L  L  G+
Sbjct: 207 EKNAVSWSAMITGYAQIGLFREALELFNDMQIAG-FRPNHGAIVGALTACAFLGALDQGR 265

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            IH +  R  +  D  L  ALIDMY+KCG ++ A RVF D   ++D   ++S++SG   H
Sbjct: 266 WIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVF-DEMLDRDVFAFTSLISGLANH 324

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G    A+ ++ +M   G  P+ +T + +LSAC R GL+ EGL I+ S+ N Y I+P  + 
Sbjct: 325 GHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQH 384

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             C+VD+LGRAG L+ A   ++ MP+EP   + GAL++A  +HG+ E+     + L +  
Sbjct: 385 YGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERS 444

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
            ++   +V LSN+YAS+ +W+ VA++R  M+++ +KK PGCS I + G    F   D +H
Sbjct: 445 LDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSH 504

Query: 518 PCSVSIYEMLDDLILIMRG 536
                    +D+++L++ G
Sbjct: 505 V-------FMDEIVLLLLG 516



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 141/362 (38%), Gaps = 78/362 (21%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    LQ  A    L      H+Q + LG  +  FV   L+  YA C     ++ +F+  
Sbjct: 115 TFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGS 174

Query: 82  QHKDVYLYNSLINGYVKNHG-------------------------------HNEALELFS 110
            ++DV  + ++INGY K+                                   EALELF+
Sbjct: 175 VNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFN 234

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
           +M  +   P+   +         +  L+ G  IH    +   V+D IL  +L+ MY KCG
Sbjct: 235 DMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCG 294

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
                  +FDEM  R+                                  V+A+T++I+G
Sbjct: 295 CVETACRVFDEMLDRD----------------------------------VFAFTSLISG 320

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIR 285
              +G    A+ +F  MQ  + + PN+V+ + +L  CS +  +  G +I       + I 
Sbjct: 321 LANHGHSATAIEMFTRMQ-NEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIE 379

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHE 342
             + H       L+D+  + G L+ A+RV  +     D+    ++++   +HG    G E
Sbjct: 380 PVVQH----YGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKE 435

Query: 343 AV 344
            V
Sbjct: 436 TV 437


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 163/499 (32%), Positives = 280/499 (56%), Gaps = 14/499 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQP--TQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ  S +   G + +PF + ++I+  A+  Q   + + L+F S+  +  +++N+++  + 
Sbjct: 5   KQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFT 64

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
                   L L+  M  +   P+++T + + +   ++ DL+ G+L+H  ++++G+     
Sbjct: 65  DKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDF 124

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + N L+ +Y  C        LFD    R+V +W   I+G+A SG    VV +R++FD+M 
Sbjct: 125 VQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQ---VVVARQLFDEMP 181

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            +N  +W+AMI GY Q G   EAL LF +MQ+     PN  ++V  L  C+ L  L  G+
Sbjct: 182 EKNAVSWSAMITGYAQIGLFREALELFNDMQIAG-FRPNHGAIVGALTACAFLGALDQGR 240

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            IH +  R  +  D  L  ALIDMY+KCG ++ A RVF D   ++D   ++S++SG   H
Sbjct: 241 WIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVF-DEMLDRDVFAFTSLISGLANH 299

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G    A+ ++ +M   G  P+ +T + +LSAC R GL+ EGL I+ S+ N Y I+P  + 
Sbjct: 300 GHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQH 359

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             C+VD+LGRAG L+ A   ++ MP+EP   + GAL++A  +HG+ E+     + L +  
Sbjct: 360 YGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERS 419

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
            ++   +V LSN+YAS+ +W+ VA++R  M+++ +KK PGCS I + G    F   D +H
Sbjct: 420 LDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSH 479

Query: 518 PCSVSIYEMLDDLILIMRG 536
                    +D+++L++ G
Sbjct: 480 V-------FMDEIVLLLLG 491



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 141/362 (38%), Gaps = 78/362 (21%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    LQ  A    L      H+Q + LG  +  FV   L+  YA C     ++ +F+  
Sbjct: 90  TFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGS 149

Query: 82  QHKDVYLYNSLINGYVKNHG-------------------------------HNEALELFS 110
            ++DV  + ++INGY K+                                   EALELF+
Sbjct: 150 VNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFN 209

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
           +M  +   P+   +         +  L+ G  IH    +   V+D IL  +L+ MY KCG
Sbjct: 210 DMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCG 269

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
                  +FDEM  R+                                  V+A+T++I+G
Sbjct: 270 CVETACRVFDEMLDRD----------------------------------VFAFTSLISG 295

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIR 285
              +G    A+ +F  MQ  + + PN+V+ + +L  CS +  +  G +I       + I 
Sbjct: 296 LANHGHSATAIEMFTRMQ-NEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIE 354

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHE 342
             + H       L+D+  + G L+ A+RV  +     D+    ++++   +HG    G E
Sbjct: 355 PVVQH----YGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKE 410

Query: 343 AV 344
            V
Sbjct: 411 TV 412


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 179/568 (31%), Positives = 306/568 (53%), Gaps = 71/568 (12%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K+ H+QI+     ++ +V+ KLI+A++LC Q   +  VFN IQ  +V+LYN+LI  +V+N
Sbjct: 40  KEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQN 99

Query: 100 --------------------------------------------HGHNEALELFSNMYYS 115
                                                       H H E    F +++  
Sbjct: 100 SQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVP 159

Query: 116 NVSPDDFTLATI------SKLSGEI--KDL-NVGMLIHGLSIKIGFV------------V 154
           N   D ++   +       KL  E+  KDL +   +I GL +K G +             
Sbjct: 160 NSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGL-VKAGDLGRARKLFDEMAER 218

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D +  N+++  YVK G+ S+  NLF++MP+RNV SW+  +SG+  +GD  +   +R +FD
Sbjct: 219 DAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEM---ARMLFD 275

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  +N+  WT +I+G+ + G   EA  L+ +M+    ++P+  +L+S+L  C+    L 
Sbjct: 276 KMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAG-LKPDDGTLISILAACAESGLLV 334

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK++H    +  +   V++ NAL+DMY+KCG +D A  +F + S  +D ++W+ ++ G 
Sbjct: 335 LGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSM-RDLVSWNCMLQGL 393

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            +HG G +A+ L++KM   G KPD +T++ +L AC  +G +++GL  +NS+   + I P 
Sbjct: 394 AMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPH 453

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C++D+LGR G+L+ A   +++MP+EP+  IWG L+ A  +H    + +     LI
Sbjct: 454 IEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLI 513

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
            LE  +P NY  LSN++A++  W++VA +R  MK  G++K  G S I +  + H F+V D
Sbjct: 514 TLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEFTVFD 573

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASPH 542
           K+HP +  IY++L  L   ++  A +P 
Sbjct: 574 KSHPETDKIYQILVKLGQDLKQVAYAPE 601



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 182/425 (42%), Gaps = 77/425 (18%)

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           D N    +H   IK     D+ +A  L+S +  C + +  +N+F+++   NV  +N  I 
Sbjct: 35  DFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIR 94

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYA----------------W---TAMINGYVQN-- 234
            H  +   S  +++   F  M++  ++A                W     MI+ +V+   
Sbjct: 95  AHVQN---SQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYG 151

Query: 235 --GDL------------------DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL---- 270
             GDL                  + A+ LF+EM  KD +  N  S++  L     L    
Sbjct: 152 FFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWN--SMIGGLVKAGDLGRAR 209

Query: 271 ---------IGLSGGKQIHGFAIRKELNHDVSL-----------CNALIDMYSKCGSLDC 310
                      +S    + G+    E++   +L            + ++  Y K G ++ 
Sbjct: 210 KLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEM 269

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR +F+   F K+ +TW+ I+SG+   G   EA  LYN+M   G KPD  T++ +L+AC 
Sbjct: 270 ARMLFDKMPF-KNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACA 328

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
            SGL+  G +++ S I   RIK +  +   +VDM  + G++D+AL     M +    S W
Sbjct: 329 ESGLLVLGKKVHAS-IKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVS-W 386

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW---DAVAELRTMM 487
             ++    MHG+ E + +   S +Q E   P     ++ L A +        ++   +M 
Sbjct: 387 NCMLQGLAMHGHGE-KAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSME 445

Query: 488 KDRGL 492
           +D G+
Sbjct: 446 RDHGI 450



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 3/165 (1%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
            T+   L   A    L L K+ H+ I  +    +  VS  L+  YA CG+  ++  +FN 
Sbjct: 318 GTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNE 377

Query: 81  IQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           +  +D+  +N ++ G +  HGH E A++LFS M      PD  TL  I         ++ 
Sbjct: 378 MSMRDLVSWNCMLQG-LAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQ 436

Query: 140 GM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           G+   + +    G V  +     ++ +  + G+  E   L   MP
Sbjct: 437 GLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMP 481


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/491 (35%), Positives = 278/491 (56%), Gaps = 12/491 (2%)

Query: 41  QSHSQILS---LGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           Q H+ IL    L H   P ++ KL  AYA  G+   S  +F+     D++L+ + IN   
Sbjct: 45  QIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTAS 104

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
            N   ++A  L+  +  S ++P++FT ++I K S   K    G LIH   +K G  +D  
Sbjct: 105 INGLKDQAFLLYVQLLSSQINPNEFTFSSILK-SCSTKS---GKLIHTHVLKFGLGLDPY 160

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           +A  L+ +Y K G       +FD MP+R++ S    I+ +A  G+   V  +R +FD+M 
Sbjct: 161 VATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGN---VEAARALFDRMC 217

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            R++ +W  MI+GY Q+G   +AL+LF ++    + +P+++++V+ L  CS +  L  G+
Sbjct: 218 ERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGR 277

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            IH F     +  +V +C ALIDMYSKCGSL+ A  VF D+   KD + W+++++GY +H
Sbjct: 278 WIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTP-RKDIVAWNAMITGYAMH 336

Query: 338 GKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           G   +A+ L+++M  + G +P  IT +G L AC  +GL+NEG++I+ S+   Y IKP  E
Sbjct: 337 GYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIE 396

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
              C+V +LGRAGQL RA + IK M +E    +W +++ +  +HG   +     + LI  
Sbjct: 397 HYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQ 456

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
              N   YV LSN+YA    ++ VA++R +MK++G+ K PG S I I  K H F   D+ 
Sbjct: 457 NISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDRE 516

Query: 517 HPCSVSIYEML 527
           H  S  IY ML
Sbjct: 517 HLKSKEIYTML 527



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 142/342 (41%), Gaps = 75/342 (21%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ------------ 82
           S K  K  H+ +L  G   +P+V+T L+  YA  G    +Q VF+ +             
Sbjct: 139 STKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMIT 198

Query: 83  -------------------HKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDF 122
                               +D+  +N +I+GY ++   ++AL LF  +       PD+ 
Sbjct: 199 CYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEI 258

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T+        +I  L  G  IH         ++V +  +L+ MY KCG   E + +F++ 
Sbjct: 259 TVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDT 318

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P++++ +WN  I+G+A                             ++GY Q     +AL 
Sbjct: 319 PRKDIVAWNAMITGYA-----------------------------MHGYSQ-----DALR 344

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNA 297
           LF EMQ    ++P  ++ +  L  C+    ++ G QI       + I+ ++ H       
Sbjct: 345 LFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEH----YGC 400

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           L+ +  + G L  A  + ++ +   D++ WSS++    LHG+
Sbjct: 401 LVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGE 442


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 187/561 (33%), Positives = 285/561 (50%), Gaps = 55/561 (9%)

Query: 20   SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            +AT+   LQ      +L   KQ H  +   G  S+  +   LI+ Y+  G+   ++ VF+
Sbjct: 775  TATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFD 834

Query: 80   SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT---------------- 123
            S+++++   +NS+I+ Y      N+A  LF  +  S++ PD  T                
Sbjct: 835  SMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEE 894

Query: 124  -LATISKLSGE------------------IKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
             L  + ++ GE                  +  LN+G   HG  ++ GF  DV +  SL+ 
Sbjct: 895  VLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLID 954

Query: 165  MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----N 220
            MYVK         +FD M  RN+ +WN  +SG++  G F   +R   + +QM++     +
Sbjct: 955  MYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALR---LLNQMEKEGIKPD 1011

Query: 221  VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
            +  W  MI+GY   G   +A +            PN  S+  +L  C+SL  L  GK+IH
Sbjct: 1012 LVTWNGMISGYAMWGCARKAFM------------PNSASITCLLRACASLSLLQKGKEIH 1059

Query: 281  GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
              +IR     DV +  ALIDMYSK  SL  A +VF     NK   +W+ ++ G+ + G G
Sbjct: 1060 CLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQ-NKTLASWNCMIMGFAIFGLG 1118

Query: 341  HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
             EA+ ++N+M  +G  PD IT   +LSAC  SGLI EG + ++S+I  YRI P  E   C
Sbjct: 1119 KEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCC 1178

Query: 401  VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
            +VD+LGRAG LD A D I TMP++P  +IWGAL+ +  +H N    + A K+L +LEP N
Sbjct: 1179 MVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNN 1238

Query: 461  PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
             +NY+ + NLY+   RW+ +  LR +M   G++     SWI I+ + H FS  +K HP +
Sbjct: 1239 SANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDA 1298

Query: 521  VSIYEMLDDLILIMRGAAASP 541
              IY  L  L+  M+     P
Sbjct: 1299 GKIYFELYQLVSEMKKLGYVP 1319



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 176/347 (50%), Gaps = 14/347 (4%)

Query: 38   LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
            L  + H  ++  G   + ++   L+  Y  C    ++  VF+ + + +  L+N  I   +
Sbjct: 692  LGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNL 751

Query: 98   KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
            ++    + +ELF  M +S +  +  T+  + +  G++  LN    IHG   + G   DV 
Sbjct: 752  QSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVS 811

Query: 158  LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
            L N L+SMY K GK      +FD M  RN  SWN  IS +A+ G    +  +  +F +++
Sbjct: 812  LCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALG---FLNDAWSLFYELE 868

Query: 218  ----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                + ++  W  +++G+  +G  +E L +   MQ  +  +PN  S+ SVL   S L  L
Sbjct: 869  SSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ-GEGFKPNSSSMTSVLQAISELGFL 927

Query: 274  SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
            + GK+ HG+ +R   + DV +  +LIDMY K  SL  A+ VF D+  N++   W+S+VSG
Sbjct: 928  NMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVF-DNMKNRNIFAWNSLVSG 986

Query: 334  YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS-----ACGRSGLI 375
            Y   G   +A+ L N+M   G KPD++T  G++S      C R   +
Sbjct: 987  YSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFM 1033



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 186/450 (41%), Gaps = 76/450 (16%)

Query: 46   ILSLGHISNPFVSTK-LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH-N 103
            ++ L    NP  + K LI++Y   G    + +VF     ++   +NS +  +  + G  +
Sbjct: 597  MIKLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLH 656

Query: 104  EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163
              LE+F  ++   V  D    +   K    + D+ +GM IHG  IK GF +DV L  +LM
Sbjct: 657  IVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALM 716

Query: 164  SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
            + Y +C    +   +F EMP      WN  I                             
Sbjct: 717  NFYGRCWGLEKANQVFHEMPNPEALLWNEAI----------------------------- 747

Query: 224  WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
               ++N  +Q+  L + + LF +MQ    ++    ++V VL  C  +  L+  KQIHG+ 
Sbjct: 748  ---ILN--LQSEKLQKGVELFRKMQF-SFLKAETATIVRVLQACGKMGALNAAKQIHGYV 801

Query: 284  IRKELNHDVSLCNALIDMYSKCGSLDCARRVF---------------------------- 315
             R  L+ DVSLCN LI MYSK G L+ ARRVF                            
Sbjct: 802  FRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAW 861

Query: 316  ------EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
                  E S    D +TW+ ++SG+ LHG   E + +  +M   G KP+  ++  VL A 
Sbjct: 862  SLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAI 921

Query: 370  GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
               G +N G E +  V+          +   ++DM  +   L  A      M    +   
Sbjct: 922  SELGFLNMGKETHGYVLRN-GFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMK-NRNIFA 979

Query: 430  WGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            W +LVS     G   M + A + L Q+E E
Sbjct: 980  WNSLVSGYSFKG---MFEDALRLLNQMEKE 1006


>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 629

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 178/512 (34%), Positives = 284/512 (55%), Gaps = 14/512 (2%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQ 82
           H LQ    + ++K TKQ H+  ++       ++S++++  +A    G    ++ +F  + 
Sbjct: 27  HLLQ-QWQNLTMKQTKQIHAHAIANNLTRFSYISSRILAFFAASPRGDFRYAETLFTHMP 85

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
           + +++ YNS+I  Y  N   +++L +F+ M   N+ P+  T  T+ K    +  L     
Sbjct: 86  NPNIFDYNSIITSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTLVKSCVTLSSLE---Q 142

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +  L++K G   DV   +S+++++ K G       +FDE   RNV  W   +SG+ S G 
Sbjct: 143 VFTLTMKSGNSSDVYFVSSVINVFSKHGAIHLARQVFDESSNRNVVCWTSLVSGYCSCG- 201

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD----RIEPNKV 258
             LV   R VFD+M +RN  + +AM++GYV+N    E + LF E++ KD    R++ N  
Sbjct: 202 --LVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRARVKFNGA 259

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
            LVSVL  C+ +     GK IH +     L +D+ L  ALID Y+KCG +  A +VF D 
Sbjct: 260 LLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDLELGTALIDFYAKCGWVKDAEKVF-DK 318

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              KD  TWS+++ G  ++G    A+ L+ KM  +G KP+ +T VGVL+AC    L  E 
Sbjct: 319 MLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGES 378

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
             ++  +   Y I P+ E   C+VD+L R+GQ+ +AL FI +M +EP  +IWG+L++  +
Sbjct: 379 SRLFGIMSEKYNITPSIEHYGCIVDILARSGQVKKALIFINSMHIEPDGAIWGSLLNGCL 438

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           MHG+ E+     K LI+ +PE+   YV L+N+YA+  +W+ V+E+R +MKDRG+    G 
Sbjct: 439 MHGHYELGQKVGKYLIEFDPEHSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVVIVYGW 498

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           S+I I    H FS  DK    S  IYE+L  L
Sbjct: 499 SFIEIDQTLHKFSADDKCCLYSGEIYEVLSHL 530


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/534 (32%), Positives = 287/534 (53%), Gaps = 42/534 (7%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           ++  N+T   V  FL   A    +++ + +H ++  LG  ++      ++T Y  CG+  
Sbjct: 113 ISPNNFTFPFV--FL-ACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENG 169

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY-SNVSPDDFTLATISKLS 131
            ++ VF+ I  KD+  +NSL++GY K     EA+E+F  +   S   PD+ +L ++    
Sbjct: 170 VARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGAC 229

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
           GE+ DL +G  + G  ++ G  V+  + ++L+SMY KCG+                    
Sbjct: 230 GELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGE-------------------- 269

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                         +V SRR+FD M  R+   W A I+ Y QNG  DEA+ LF  M+ ++
Sbjct: 270 --------------LVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK-EN 314

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            ++PNKV+L +VL  C+S+  L  GKQ+  +A  + L HD+ +  ALIDMY+KCGSL+ A
Sbjct: 315 GVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESA 374

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG--SKPDIITIVGVLSAC 369
           +RVF D     DA +W++++S    HGK  EA+ L+ +M   G  ++P+ IT V +LSAC
Sbjct: 375 QRVFNDMPRKNDA-SWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSAC 433

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
             +GL++EG  +++ +   + + P  E  +C+VD+L RAG L  A D I+ MP +P    
Sbjct: 434 VHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVT 493

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489
            GAL SA     N ++ +   + L++L+P N  NY+  S +Y +   WD  A +R +M++
Sbjct: 494 LGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRE 553

Query: 490 RGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            G+ K+PGCSWI +  +   F   D     S+ +  ++D L   ++     P +
Sbjct: 554 NGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLYEELKKEGYVPKI 607



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 203/413 (49%), Gaps = 45/413 (10%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ-HKDVYLYNSLI 93
           S K  +Q H+Q  ++  I  P     L++        T S L+F+ I  H + Y +N ++
Sbjct: 33  STKTLQQIHTQ-FTIHSIHKP---NHLLSQSISLKDFTYSTLIFSHITPHPNDYAFNIML 88

Query: 94  NGYVKN-HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
                  H +   L L+  M   N+SP++FT   +      ++++ +  L H    K+G 
Sbjct: 89  RATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGL 148

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             D    NS+++MY +CG+                       +G A           R+V
Sbjct: 149 DNDHHTVNSMVTMYFRCGE-----------------------NGVA-----------RKV 174

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
           FD++  +++ +W ++++GY + G   EA+ +F  ++ +   EP+++SLVSVL  C  L  
Sbjct: 175 FDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGD 234

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  G+ + GF + + +  +  + +ALI MYSKCG L  +RR+F D   ++D ITW++ +S
Sbjct: 235 LELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIF-DGMPSRDFITWNAAIS 293

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR-I 391
            Y  +G   EA+ L++ M   G  P+ +T+  VLSAC   G ++ G ++      T+R +
Sbjct: 294 AYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYA--THRGL 351

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +    +   ++DM  + G L+ A      MP +   S W A++SA   HG ++
Sbjct: 352 QHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDAS-WNAMISALASHGKAK 403


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 185/589 (31%), Positives = 297/589 (50%), Gaps = 69/589 (11%)

Query: 10  FALVTSRNYT--SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
           F L+ SRN    S +    L+  A+    ++  +  S  +  G   N FV + +I+    
Sbjct: 118 FGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVK 177

Query: 68  CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            G+  ++Q VF+ + +KDV  +NS+I GYV+    + A +LF  M+ S + P   T+ ++
Sbjct: 178 FGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSL 237

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
            +  G I +L +G  +HG  + +G   D+++  S + MY K G       +F +MP RN+
Sbjct: 238 IQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNL 297

Query: 188 GSWNVRISGHASSG-------DFSLVVRSRRVFD-------------------------- 214
            SWN  ISG   +G        F  +VRS   FD                          
Sbjct: 298 VSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGC 357

Query: 215 --QMKRRNVYAWTAMINGYVQNGDL-------------------------------DEAL 241
             +    N+   TA+++ Y + G L                               ++AL
Sbjct: 358 AIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDAL 417

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            LF +MQ ++ I  N V+ VS++ +C+ L  L  G+ IHG   R     D+    AL+DM
Sbjct: 418 RLFAQMQ-EEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDM 476

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y+KCG ++ A R+F   S +KD + W+S+++GYG+HG G++AV +Y+KM+  G KP+  T
Sbjct: 477 YAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTT 536

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
            + +LSAC  S L+ +G+ ++NS+   + I+P  +  AC+VD+L RAG+ + A   I+ M
Sbjct: 537 FLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKM 596

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
           P +P  ++  AL+S    H N  +       L+ L+  NP  Y+ LSN+YA +RRWD V 
Sbjct: 597 PFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVD 656

Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            +R +M++RGLKK+PG S +      H F   D +HP    IY  L+ L
Sbjct: 657 YIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESL 705



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 214/456 (46%), Gaps = 47/456 (10%)

Query: 17  NYTSATVQHFLQV-SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ 75
           N     + +FL +   + ++L   K +H+QI++    ++ FV+TKL+ AY+       ++
Sbjct: 25  NQLPTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAAR 84

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
            VF+        L N+++ GY+++  + E LELF  M   N+  D  +     K      
Sbjct: 85  YVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSL 144

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           D  +GM I   +++ G   +  + +S++S  VK GK  E   +FD MP ++V  WN    
Sbjct: 145 DYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWN---- 200

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                                         ++I GYVQ G  D A  LF EM     I+P
Sbjct: 201 ------------------------------SIIGGYVQAGCFDVAFQLFFEMH-GSGIKP 229

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           + +++ S++  C  +  L  GK +HG+ +   L +D+ +  + +DMYSK G ++ AR VF
Sbjct: 230 SPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVF 289

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
                 ++ ++W++++SG   +G   E+  L++++V      D+ TIV +L  C ++  +
Sbjct: 290 YKMP-TRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASL 348

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
             G  ++   I ++  +    +   +VD+  + G L +A  F+     + +   W A++ 
Sbjct: 349 ATGKILHGCAIRSF--ESNLILSTAIVDLYSKCGSLKQA-TFVFNRMKDRNVITWTAMLV 405

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPE----NPSNYVSL 467
               +G++E    A +   Q++ E    N   +VSL
Sbjct: 406 GLAQNGHAED---ALRLFAQMQEEGIAANSVTFVSL 438


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 164/482 (34%), Positives = 266/482 (55%), Gaps = 38/482 (7%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           +L  Q HS ++   +  N  V   LI  Y   G   +++ VF+ ++ +DV  + ++I+G 
Sbjct: 253 RLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGC 312

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           V N   ++ALE +  M  +   PD+ T+A++      +  L++GM +H L+ + G ++ V
Sbjct: 313 VDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYV 372

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           ++ANSL+ MY KC +  + L +F ++P ++                              
Sbjct: 373 VVANSLIDMYSKCKRIEKALEIFHQIPDKD------------------------------ 402

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
               V +WT++ING   N    EAL+ F +M LK +  PN V+L+S L  C+ +  L  G
Sbjct: 403 ----VISWTSVINGLRINNRCFEALIFFRKMILKSK--PNSVTLISALSACARVGALMCG 456

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K+IH  A++  +  D  L NA++D+Y +CG +  A   F  +   KD   W+ +++GY  
Sbjct: 457 KEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFNLNE--KDVGAWNILLTGYAQ 514

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
            GKG   + L+ +MV     PD +T + +L AC RSG++ EGLE +  +   Y I P  +
Sbjct: 515 KGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLK 574

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             ACVVD+LGRAG+L+ A +FI+ MP++P P+IWGAL++A  +H +  + +LA + + + 
Sbjct: 575 HYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQ 634

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           + E+   Y+ L NLYA S +WD VA++R  MK+ GL   PGCSW+ + GK H F   D  
Sbjct: 635 DAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNF 694

Query: 517 HP 518
           HP
Sbjct: 695 HP 696



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 215/454 (47%), Gaps = 41/454 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  A    L   ++ H+ ++      +  V   LIT Y  CG    ++++F+ +
Sbjct: 137 TFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKM 196

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D   +N++I+GY +N    E LELF  M   ++ PD  T+ ++      + D  +G 
Sbjct: 197 PTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGT 256

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   ++  +  ++ + NSL+ MY+  G + E  ++F  M  R+V SW           
Sbjct: 257 QLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSW----------- 305

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  T +I+G V N   D+AL  +  M++   + P++V++ 
Sbjct: 306 -----------------------TTIISGCVDNLLPDKALETYKTMEITGTM-PDEVTIA 341

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVL  C+SL  L  G ++H  A R      V + N+LIDMYSKC  ++ A  +F     +
Sbjct: 342 SVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIP-D 400

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD I+W+S+++G  ++ +  EA++ + KM+ L SKP+ +T++  LSAC R G +  G EI
Sbjct: 401 KDVISWTSVINGLRINNRCFEALIFFRKMI-LKSKPNSVTLISALSACARVGALMCGKEI 459

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +   +    +     +   ++D+  R G++  AL+       E     W  L++     G
Sbjct: 460 HAHALKA-GMGFDGFLPNAILDLYVRCGRMRTALNQFNLN--EKDVGAWNILLTGYAQKG 516

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
              M    +K +++ E  NP +   +S L A SR
Sbjct: 517 KGAMVMELFKRMVESEI-NPDDVTFISLLCACSR 549



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 200/415 (48%), Gaps = 40/415 (9%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L++ +   G    +  VF  +  +D++ +N L+ GY K    +EAL L+  + ++ + PD
Sbjct: 75  LLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPD 134

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            +T  ++ +      DL  G  +H   ++  F +DV + N+L++MYVKCG          
Sbjct: 135 VYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGD--------- 185

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                                    VV +R +FD+M  R+  +W AMI+GY +N +  E 
Sbjct: 186 -------------------------VVSARMLFDKMPTRDRISWNAMISGYFENDECLEG 220

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF  M+ +  I+P+ +++ SV+  C  L     G Q+H + +R   + ++S+ N+LI 
Sbjct: 221 LELFFRMR-ELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQ 279

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY   G    A  VF      +D ++W++I+SG   +    +A+  Y  M   G+ PD +
Sbjct: 280 MYLSVGHWKEAESVFSGMEC-RDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEV 338

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           TI  VLSAC   G ++ G++++     T  I     +   ++DM  +  ++++AL+    
Sbjct: 339 TIASVLSACASLGQLDMGMKLHELAERTGHILYVV-VANSLIDMYSKCKRIEKALEIFHQ 397

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
           +P +   S W ++++   ++       + ++ +I      P++   +S L A +R
Sbjct: 398 IPDKDVIS-WTSVINGLRINNRCFEALIFFRKMIL--KSKPNSVTLISALSACAR 449



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 176/390 (45%), Gaps = 85/390 (21%)

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
           ++ V L N+L+SM+V+ G      N+F  M +R++ SWNV                    
Sbjct: 66  LLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNV-------------------- 105

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
                         ++ GY + G  DEAL L+  + L   I P+  +  SVL +C+  + 
Sbjct: 106 --------------LVGGYTKAGFFDEALCLYHRI-LWAGIRPDVYTFPSVLRSCAGAMD 150

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  G+++H   +R + + DV + NALI MY KCG +  AR +F D    +D I+W++++S
Sbjct: 151 LVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLF-DKMPTRDRISWNAMIS 209

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG-------------- 378
           GY  + +  E + L+ +M  L   PD++T+  V+SAC   G    G              
Sbjct: 210 GYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDG 269

Query: 379 -LEIYNSVINTYR--------------------IKPTTEICACVVDML-GRAGQLDRALD 416
            + +YNS+I  Y                     +  TT I  CV ++L  +A +  + ++
Sbjct: 270 NISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTME 329

Query: 417 FIKTMPVEPS-PSIWGALVSASVMHGNSEMQDLAYKS--LIQLEPENPSNYVSLSNLYAS 473
              TMP E +  S+  A  S   +    ++ +LA ++  ++ +   N     SL ++Y+ 
Sbjct: 330 ITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVAN-----SLIDMYSK 384

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
            +R +   E+   + D+ +      SW S+
Sbjct: 385 CKRIEKALEIFHQIPDKDV-----ISWTSV 409



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 8/290 (2%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           +T       T+   L   A+   L +  + H      GHI    V+  LI  Y+ C +  
Sbjct: 330 ITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIE 389

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
           ++  +F+ I  KDV  + S+ING   N+   EAL  F  M   +  P+  TL +      
Sbjct: 390 KALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACA 448

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +  L  G  IH  ++K G   D  L N+++ +YV+CG+    LN F+ + +++VG+WN+
Sbjct: 449 RVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNI 507

Query: 193 RISGHASSGDFSLVVR-SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
            ++G+A  G  ++V+   +R+ +     +   + +++    ++G + E L  F  M++  
Sbjct: 508 LLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNY 567

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGG-KQIHGFAIRKELNHDVSLCNALID 300
            I PN      V+     L+G +G   + H F  R  +  D ++  AL++
Sbjct: 568 HITPNLKHYACVV----DLLGRAGKLNEAHEFIERMPIKPDPAIWGALLN 613


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 175/496 (35%), Positives = 267/496 (53%), Gaps = 36/496 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L L +Q H+ ++  G   N +V + LI  YA  GQ   +  +   +   DV  + ++I 
Sbjct: 478 ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GYV++   +EAL+LF  M Y  +  D+   A+       I+ L  G  IH  S   GF  
Sbjct: 538 GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA 597

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+ + N+L+S+Y +CG+  E    F+++  +N  SWN  +SG A SG F           
Sbjct: 598 DLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYF----------- 646

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                                  +EAL +F+ M L+   E N  +  S +   +SL  + 
Sbjct: 647 -----------------------EEALQVFVRM-LRTEAEVNMFTYGSAISAAASLANIK 682

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+QIH   ++   + +  + N+LI +Y+K GS+  A R F D S  ++ I+W+++++GY
Sbjct: 683 QGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGY 741

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG G EA+ L+ +M   G  P+ +T VGVLSAC   GL+ EGL+ + S+   + + P 
Sbjct: 742 SQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPK 801

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
           +E   CVVD+LGRAGQLDRA+++IK MP+     IW  L+SA V+H N E+ + A   L+
Sbjct: 802 SEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLL 861

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEPE+ + YV +SN+YA SR+W      R +MKD G+KK PG SWI +    H F   D
Sbjct: 862 ELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGD 921

Query: 515 KAHPCSVSIYEMLDDL 530
           K HP +  IYE +  L
Sbjct: 922 KLHPLTNQIYEYIGHL 937



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 197/437 (45%), Gaps = 46/437 (10%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L  S   +  +L +Q H  ++  G  S  +V   L+  Y+   +   ++ +F+++  +D 
Sbjct: 268 LSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDG 327

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             YNSLI+G V+    + ALELF+ M    + PD  T+A++      +  L+ GM +H  
Sbjct: 328 VSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSH 387

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           +IK G   D+IL  SL+ +Y KC         F      N+  WNV              
Sbjct: 388 AIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNV-------------- 433

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                               M+  Y Q  +L ++  +F +MQ++  I PN+ +  S+L T
Sbjct: 434 --------------------MLVAYGQLDNLSDSFEIFRQMQMEGMI-PNQFTYPSILRT 472

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA----RRVFEDSSFNK 322
           C+SL  L  G+QIH   I+     +V +C+ LIDMY+K G L  A    RR+ ED     
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPED----- 527

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D ++W+++++GY  H    EA+ L+ +M   G + D I     +SAC     + +G +I+
Sbjct: 528 DVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIH 587

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
                         I   ++ +  R G++  A    + +  + + S W +LVS     G 
Sbjct: 588 AQSYAA-GFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNIS-WNSLVSGLAQSGY 645

Query: 443 SEMQDLAYKSLIQLEPE 459
            E     +  +++ E E
Sbjct: 646 FEEALQVFVRMLRTEAE 662



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 188/414 (45%), Gaps = 43/414 (10%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            L+   T  SL  T + H +I   G    P +   L+  Y   G    +  VF+   ++ 
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK--LSGEIKDLNVGMLI 143
           V+ +N +I+ +V    + +   LF  M    ++P+ +T A + K  + G+I   N    +
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIA-FNYVKQV 182

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H  +   GF    ++AN L+ +Y K G                                 
Sbjct: 183 HSRTFYYGFDSSPLVANLLIDLYSKNG--------------------------------- 209

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
             +  +++VF+ +  +++  W AMI+G  QNG  +EA++LF +M   + I P    L SV
Sbjct: 210 -YIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASE-IFPTPYVLSSV 267

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN-K 322
           L   + +     G+Q+H   I+   + +  +CN L+ +YS+   L  A R+F  S+ N +
Sbjct: 268 LSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIF--STMNSR 325

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D ++++S++SG    G    A+ L+ KM     KPD IT+  +LSAC   G +++G++++
Sbjct: 326 DGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLH 385

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +  I    +     +   ++D+  +   ++ A  F      E +  +W  ++ A
Sbjct: 386 SHAIKA-GMSADIILEGSLLDLYSKCADVETAHKFFLXTETE-NIVLWNVMLVA 437



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 5/235 (2%)

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC-SS 269
           +VFD+   R+V++W  MI+ +V      +   LF  M L + I PN  +   VL  C   
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM-LAEGITPNGYTFAGVLKACVGG 172

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
            I  +  KQ+H        +    + N LID+YSK G ++ A++VF +    KD +TW +
Sbjct: 173 DIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVF-NCICMKDIVTWVA 231

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++SG   +G   EA+LL+  M      P    +  VLSA  +  L   G +++  VI  +
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK-W 290

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
                T +C  +V +  R+ +L  A     TM      S + +L+S  V  G S+
Sbjct: 291 GFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS-YNSLISGLVQQGFSD 344



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 3/182 (1%)

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L ++L+D Y + G    A +VF+++S N+   +W+ ++  +       +   L+ +M+  
Sbjct: 95  LIDSLVDNYFRHGDQHGAVKVFDENS-NRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAE 153

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G  P+  T  GVL AC    +    ++  +S    Y    +  +   ++D+  + G ++ 
Sbjct: 154 GITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIES 213

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A      + ++   + W A++S    +G  E   L +  +   E   P+ YV  S L AS
Sbjct: 214 AKKVFNCICMKDIVT-WVAMISGLSQNGLEEEAILLFCDMHASEI-FPTPYVLSSVLSAS 271

Query: 474 SR 475
           ++
Sbjct: 272 TK 273


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/538 (32%), Positives = 281/538 (52%), Gaps = 69/538 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L+  A  ++ +  +Q H  +L LG+  + +V T LI+ YA  G+   +  VF+
Sbjct: 66  SYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFD 125

Query: 80  SIQHKDVYLY-------------------------------NSLINGYVKNHGHNEALEL 108
              H+DV  Y                               N++I+GY +   + EALEL
Sbjct: 126 RSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALEL 185

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           F  M  +NV PD+ T+ T+     + + + +G  +H      GF  ++ + N+L+ +Y K
Sbjct: 186 FKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSK 245

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG+      LF+ +  ++V S                                  W  +I
Sbjct: 246 CGQVETACGLFEGLSCKDVVS----------------------------------WNTLI 271

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-- 286
            GY       EAL+LF EM L+    PN V++VS+LP C+ L  +  G+ IH +  +K  
Sbjct: 272 GGYTHMNLYKEALLLFQEM-LRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLK 330

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
           ++ +  SL  +LIDMY+KCG ++ A +VF +S  +K   +W++++ G+ +HG+ +    L
Sbjct: 331 DVTNAPSLRTSLIDMYAKCGDIEAAHQVF-NSMLHKSLSSWNAMIFGFAMHGRANAGFDL 389

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           +++M   G +PD IT VG+LSAC  SG ++ G  I+ S+   Y I P  E   C++D+LG
Sbjct: 390 FSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLG 449

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466
            +G    A + IKTMP+EP   IW +L+ A   HGN E+ +   ++L+++EPENP +YV 
Sbjct: 450 HSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVL 509

Query: 467 LSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           LSN+YA++  WD VA++R ++  +G+KK PGCS I I  + H F V DK HP +  IY
Sbjct: 510 LSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIY 567



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 202/368 (54%), Gaps = 7/368 (1%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF +IQ  +  ++N+++ GY  +     AL+L+  M    + P+ +T   + K   + K 
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
              G  IHG  +K+G+  D+ +  SL+SMY + G+  +   +FD    R+V S+   I+G
Sbjct: 82  FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITG 141

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +ASSG+   +  ++ +FD++  ++V +W AMI+GY + G   EAL LF EM +K  + P+
Sbjct: 142 YASSGN---IRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEM-MKTNVRPD 197

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + ++V+VL  C+    +  G+Q+H +        ++ + NALID+YSKCG ++ A  +FE
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
             S  KD ++W++++ GY       EA+LL+ +M+  G  P+ +TIV +L AC   G I+
Sbjct: 258 GLSC-KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAID 316

Query: 377 EGLEIYNSVINTYR-IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            G  I+  +    + +     +   ++DM  + G ++ A     +M +  S S W A++ 
Sbjct: 317 IGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIF 375

Query: 436 ASVMHGNS 443
              MHG +
Sbjct: 376 GFAMHGRA 383



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 67/295 (22%)

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
           F   +++F  + + N   WN  + G+A S D                             
Sbjct: 16  FPYAISVFATIQEPNQLIWNTMLRGYALSSDPV--------------------------- 48

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
                   AL L++ M +   + PN  +   +L +C+       G+QIHG  ++     D
Sbjct: 49  -------SALKLYVVM-ISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPD 100

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFN------------------------------ 321
           + +  +LI MY++ G L+ A +VF+ SS                                
Sbjct: 101 LYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPV 160

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD ++W++++SGY   G   EA+ L+ +M+    +PD  T+V VLSAC +S  +  G ++
Sbjct: 161 KDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQV 220

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           + S I+ +      +I   ++D+  + GQ++ A    + +  +   S W  L+  
Sbjct: 221 H-SWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVS-WNTLIGG 273


>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
 gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 530

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 170/503 (33%), Positives = 284/503 (56%), Gaps = 10/503 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +LK  KQSH  ++  G   +     K I A +  G    +  VF      + YL+N++I 
Sbjct: 27  NLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIR 86

Query: 95  GYV---KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
                 + + H+ A+ ++  ++     PD FT   + K++  + D+  G  IHG  +  G
Sbjct: 87  ALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFG 146

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F   V +   L+ MY  CG   +   +FDEM  ++V  WN  ++G+   G+      +R 
Sbjct: 147 FDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMD---EARS 203

Query: 212 VFDQMK--RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           + + M    RN  +WT +I+GY ++G   EA+ +F  M L + +EP++V+L++VL  C+ 
Sbjct: 204 LLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRM-LMENVEPDEVTLLAVLSACAD 262

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  L  G++I  +   + +N  VSL NA+IDMY+K G++  A  VFE  +  ++ +TW++
Sbjct: 263 LGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVN-ERNVVTWTT 321

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           I++G   HG G EA+ ++N+MV  G +P+ +T + +LSAC   G ++ G  ++NS+ + Y
Sbjct: 322 IIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKY 381

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I P  E   C++D+LGRAG+L  A + IK+MP + + +IWG+L++AS +H + E+ + A
Sbjct: 382 GIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERA 441

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
              LI+LEP N  NY+ L+NLY++  RWD    +R MMK  G+KK  G S I +  + + 
Sbjct: 442 LSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYK 501

Query: 510 FSVADKAHPCSVSIYEMLDDLIL 532
           F   D  HP    I+E+L ++ L
Sbjct: 502 FISGDLTHPQVERIHEILQEMDL 524



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 145/354 (40%), Gaps = 77/354 (21%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+++     +   +Q H Q++  G  S+  V T LI  Y  CG    ++ +F+ +
Sbjct: 118 TFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEM 177

Query: 82  QHKDVYLYNSL---------------------------------INGYVKNHGHNEALEL 108
             KDV ++N+L                                 I+GY K+   +EA+E+
Sbjct: 178 LVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEV 237

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           F  M   NV PD+ TL  +     ++  L +G  I       G    V L N+++ MY K
Sbjct: 238 FQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAK 297

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
            G  ++ L++F+ + +RNV +W   I+G A+ G  +                        
Sbjct: 298 SGNITKALDVFECVNERNVVTWTTIIAGLATHGHGA------------------------ 333

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FA 283
                     EAL +F  M +K  + PN V+ +++L  CS +  +  GK++       + 
Sbjct: 334 ----------EALAMFNRM-VKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYG 382

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           I   + H       +ID+  + G L  A  V +   F  +A  W S+++   +H
Sbjct: 383 IHPNIEH----YGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVH 432



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 4/225 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A   SL+L ++  S +   G      ++  +I  YA  G  T++  VF  +
Sbjct: 252 TLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECV 311

Query: 82  QHKDVYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
             ++V  + ++I G +  HGH  EAL +F+ M  + V P+D T   I      +  +++G
Sbjct: 312 NERNVVTWTTIIAG-LATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLG 370

Query: 141 -MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHA 198
             L + +  K G   ++     ++ +  + GK  E   +   MP + N   W   ++   
Sbjct: 371 KRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASN 430

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
              D  L  R+     +++  N   +  + N Y   G  DE+ ++
Sbjct: 431 VHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMM 475


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 156/455 (34%), Positives = 264/455 (58%), Gaps = 11/455 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCG---QPTQSQLVFNSIQHKDVYLYNSLINGY 96
           KQ H+ +L     ++P  S  L    ++C      + ++L+F  +   +V  +N+ +  +
Sbjct: 32  KQLHAHLLK---TNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSF 88

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            +     +A+ LF  +   ++SPD +T + + K    + D+  G ++HG   K+G   ++
Sbjct: 89  AEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            L N ++ +Y  CG+      +FD+MPQR+V +WN+ I+     GD      + ++F +M
Sbjct: 149 FLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAE---GAYKLFAEM 205

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
             RNV +WT+MI GY Q G   EA+ LFLEM+    + PN+V++V+VL  C+ +  L  G
Sbjct: 206 PERNVRSWTSMIGGYAQCGKSKEAIDLFLEME-DAGLLPNEVTVVAVLVACADMGNLVLG 264

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           ++IH F+ R     ++ +CN LIDMY KCG L+ A R+F D+   +  ++WS++++G   
Sbjct: 265 RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIF-DNMEERTVVSWSAMIAGLAA 323

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HG+  +A+ L+NKM+  G KP+ +T +G+L AC   G++ +G + + S+   Y I P  E
Sbjct: 324 HGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIE 383

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
              C+VD+  RAG L  A +FI  MP+ P+  +WGAL+    +H N ++ + A + L +L
Sbjct: 384 HYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKL 443

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
           +P N   YV LSN+YA + RW+ VA +R +M+DRG
Sbjct: 444 DPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG 478



 Score = 42.4 bits (98), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 4/233 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A   +L L ++ H      G+  N  V   LI  Y  CG    +  +F+++
Sbjct: 247 TVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNM 306

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + + V  ++++I G   +    +AL LF+ M  + V P+  T   I      +  +  G 
Sbjct: 307 EERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGR 366

Query: 142 -LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG-SWNVRISGHAS 199
                ++   G V  +     ++ ++ + G   E       MP    G  W   + G   
Sbjct: 367 KYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKV 426

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
             +  L   + R   ++   N   +  + N Y + G  ++  V  +   ++DR
Sbjct: 427 HKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWED--VARVRKLMRDR 477


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 164/516 (31%), Positives = 275/516 (53%), Gaps = 38/516 (7%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVS--TKLITAYALCGQPTQSQLVFNSIQHKD 85
            V A    LKL K  H+ ++  G      V   T LI  Y  C     ++ VF+ +    
Sbjct: 233 HVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKAS 292

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           +  + ++I  Y+  +  NE + LF  M    + P++ T+ ++ K  G    L +G L+H 
Sbjct: 293 IISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHA 352

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
            +++ GF + ++LA + + MY KCG                                   
Sbjct: 353 FTLRNGFTLSLVLATAFIDMYGKCGD---------------------------------- 378

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  +R VFD  K +++  W+AMI+ Y QN  +DEA  +F+ M     I PN+ ++VS+L 
Sbjct: 379 VRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMT-GCGIRPNERTMVSLLM 437

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C+    L  GK IH +  ++ +  D+ L  + +DMY+ CG +D A R+F +++ ++D  
Sbjct: 438 ICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEAT-DRDIS 496

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
            W++++SG+ +HG G  A+ L+ +M  LG  P+ IT +G L AC  SGL+ EG  +++ +
Sbjct: 497 MWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKM 556

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           ++ +   P  E   C+VD+LGRAG LD A + IK+MP+ P+ +++G+ ++A  +H N ++
Sbjct: 557 VHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKL 616

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            + A K  + LEP      V +SN+YAS+ RW  VA +R  MKD G+ K PG S I ++G
Sbjct: 617 GEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNG 676

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             H F + D+ HP +  +YEM+D++   +  A  +P
Sbjct: 677 LLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTP 712



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 176/352 (50%), Gaps = 42/352 (11%)

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
           +++ LI  Y+KN+   +A ++++ M  ++   D+F + ++ K    I    +G  +HG  
Sbjct: 91  IHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFV 150

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           +K GF  DV + N+L+ MY + G  +                                  
Sbjct: 151 VKNGFHGDVFVCNALIMMYSEVGSLA---------------------------------- 176

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            +R +FD+++ ++V +W+ MI  Y ++G LDEAL L  +M +  R++P+++ ++S+    
Sbjct: 177 LARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVM-RVKPSEIGMISITHVL 235

Query: 268 SSLIGLSGGKQIHGFAIR--KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
           + L  L  GK +H + +R  K     V LC ALIDMY KC +L  ARRVF+  S     I
Sbjct: 236 AELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLS-KASII 294

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W+++++ Y      +E V L+ KM+  G  P+ IT++ ++  CG +G +  G  ++   
Sbjct: 295 SWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFT 354

Query: 386 I-NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           + N + +  +  +    +DM G+ G +  A     +   +    +W A++S+
Sbjct: 355 LRNGFTL--SLVLATAFIDMYGKCGDVRSARSVFDSFKSK-DLMMWSAMISS 403



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 139/321 (43%), Gaps = 44/321 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   ++   T  +L+L K  H+  L  G   +  ++T  I  Y  CG    ++ VF+S 
Sbjct: 330 TMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSF 389

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KD+ +++++I+ Y +N+  +EA ++F +M    + P++ T+ ++  +  +   L +G 
Sbjct: 390 KSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGK 449

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH    K G   D+IL  S + MY  CG       LF E   R++  WN          
Sbjct: 450 WIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWN---------- 499

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   AMI+G+  +G  + AL LF EM+    + PN ++ +
Sbjct: 500 ------------------------AMISGFAMHGHGEAALELFEEMEALG-VTPNDITFI 534

Query: 262 SVLPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
             L  CS    L  GK+     +H F    ++ H       ++D+  + G LD A  + +
Sbjct: 535 GALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEH----YGCMVDLLGRAGLLDEAHELIK 590

Query: 317 DSSFNKDAITWSSIVSGYGLH 337
                 +   + S ++   LH
Sbjct: 591 SMPMRPNIAVFGSFLAACKLH 611



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 4/213 (1%)

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           +I  Y++N    +A  ++  M+  D  E +   + SVL  C  +     G+++HGF ++ 
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTD-TEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKN 153

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
             + DV +CNALI MYS+ GSL  AR +F D   NKD ++WS+++  Y   G   EA+ L
Sbjct: 154 GFHGDVFVCNALIMMYSEVGSLALARLLF-DKIENKDVVSWSTMIRSYDRSGLLDEALDL 212

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI-KPTTEICACVVDML 405
              M  +  KP  I ++ +         +  G  ++  V+   +  K    +C  ++DM 
Sbjct: 213 LRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMY 272

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
            +   L  A      +  + S   W A+++A +
Sbjct: 273 VKCENLAYARRVFDGLS-KASIISWTAMIAAYI 304


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 283/542 (52%), Gaps = 73/542 (13%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L+  A  +  K  +Q H  +L LG   + +V T LI+ YA  G+   ++ VF+
Sbjct: 89  SYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFD 148

Query: 80  SIQHKDVYLY-------------------------------NSLINGYVKNHGHNEALEL 108
              H+DV  Y                               N++I+GYV+   + EALEL
Sbjct: 149 ISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALEL 208

Query: 109 FSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           F  M   +NV PD+ T+ T+     +   + +G  +H      GF  ++ + N+L+ +Y 
Sbjct: 209 FKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYS 268

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           K G+      LFD       G WN                           ++V +W  +
Sbjct: 269 KFGEVETACELFD-------GLWN---------------------------KDVISWNTL 294

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I GY       EAL+LF EM L+    PN V+++S+LP C+ L  +  G+ IH + I K+
Sbjct: 295 IGGYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY-INKK 352

Query: 288 LNHDV----SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           L   V    SL  +LIDMY+KCG +D A++VF+ S  N+   TW++++SG+ +HG+ + A
Sbjct: 353 LKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAA 412

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
             ++++M   G +PD IT VG+LSAC  SG+++ G  I+ S+   Y I P  E   C++D
Sbjct: 413 FDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMID 472

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           +LG +G    A + I TMP+EP   IW +L+ A  +HGN E+ +   K LI++EP N  +
Sbjct: 473 LLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGS 532

Query: 464 YVSLSNLYASSRRWDAVAELRTMMKDRGLKKS-PGCSWISIHGKTHCFSVADKAHPCSVS 522
           YV LSN+YA++ RW+ VA++R ++ D+G+KK  PGCS I I    H F + DK HP +  
Sbjct: 533 YVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNRE 592

Query: 523 IY 524
           IY
Sbjct: 593 IY 594



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 210/388 (54%), Gaps = 8/388 (2%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF++IQ  ++ ++N++  G+  +     AL+L+  M    + PD +T   + K   + K 
Sbjct: 45  VFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKI 104

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
              G  IHG  +K+GF +D+ +  SL+SMY + G+  +   +FD    R+V S+   I+G
Sbjct: 105 RKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAG 164

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           + S G    +  ++++FD++  ++V +W AMI+GYV+ G+  EAL LF EM +   + P+
Sbjct: 165 YVSRG---YIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPD 221

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + ++V+V+  C+    +  G+ +H +        ++ + NALID+YSK G ++ A  +F 
Sbjct: 222 ESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELF- 280

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D  +NKD I+W++++ GY       EA+LL+ +M+  G  P+ +T++ +L AC   G I+
Sbjct: 281 DGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 340

Query: 377 EGLEIYNSVINTYR--IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
            G  I+  +    +  +   + +   ++DM  + G +D A     +     S S W A++
Sbjct: 341 IGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMI 400

Query: 435 SASVMHG--NSEMQDLAYKSLIQLEPEN 460
           S   MHG  N+     +   +  +EP++
Sbjct: 401 SGFAMHGRANAAFDIFSRMRMNGIEPDD 428



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 50/371 (13%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           ++T+     +T+   +   A   S++L +  HS I   G  SN  +   LI  Y+  G+ 
Sbjct: 214 MMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEV 273

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             +  +F+ + +KDV  +N+LI GY   + + EAL LF  M  S  +P+D T+ +I    
Sbjct: 274 ETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPAC 333

Query: 132 GEIKDLNVGMLIH-GLSIKIGFVVDVI--LANSLMSMYVKCGKFSECLNLFD-EMPQRNV 187
             +  +++G  IH  ++ K+  VV  +  L  SL+ MY KCG       +FD  M  R++
Sbjct: 334 AHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSL 393

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
            +WN  ISG A  G      R+   FD   R         +NG                 
Sbjct: 394 STWNAMISGFAMHG------RANAAFDIFSRMR-------MNG----------------- 423

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMY 302
                IEP+ ++ V +L  CS    L  G+ I      G+ I  +L H       +ID+ 
Sbjct: 424 -----IEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEH----YGCMIDLL 474

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL--GSKPDII 360
              G    A  +        D + W S++    +HG          K++ +  G+    +
Sbjct: 475 GHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYV 534

Query: 361 TIVGVLSACGR 371
            +  + +A GR
Sbjct: 535 LLSNIYAAAGR 545


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/508 (34%), Positives = 280/508 (55%), Gaps = 38/508 (7%)

Query: 41  QSHSQILSLGHISNPFVSTKLI-TAYALCGQPTQSQLVFNSIQ-----HKDVYLYNSLIN 94
           Q HS IL LG   NP V TK   T+         S ++F + Q       D +L+N+LI 
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 95  GYVKN-HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            + +  H    AL  ++ M    VSP+ FT   + K    +  L +G  +H   +K GF 
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFE 259

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            D  + N+L+ MY  C     C +                     SSG  S    +++VF
Sbjct: 260 EDPHVRNTLVHMYCCC-----CQD--------------------GSSGPVS----AKKVF 290

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D+   ++   W+AMI GY + G+   A+ LF EMQ+   + P+++++VSVL  C+ L  L
Sbjct: 291 DESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTG-VCPDEITMVSVLSACADLGAL 349

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GK +  +  RK +   V LCNALIDM++KCG +D A +VF +    +  ++W+S++ G
Sbjct: 350 ELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKV-RTIVSWTSMIVG 408

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
             +HG+G EAVL++++M+  G  PD +  +GVLSAC  SGL+++G   +N++ N + I P
Sbjct: 409 LAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVP 468

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             E   C+VDML RAG+++ AL+F++ MPVEP+  IW ++V+A    G  ++ +   K L
Sbjct: 469 KIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKEL 528

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           I+ EP + SNYV LSN+YA   RW+   ++R MM  +G++K PG + I ++ + + F   
Sbjct: 529 IRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAG 588

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASP 541
           DK+H     IYEM++++   ++ A   P
Sbjct: 589 DKSHDQYKEIYEMVEEMGREIKRAGYVP 616



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 134/329 (40%), Gaps = 51/329 (15%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ-----PTQSQL 76
           T    L+  A    L+L    H+ ++  G   +P V   L+  Y  C Q     P  ++ 
Sbjct: 229 TFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKK 288

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+    KD   ++++I GY +      A+ LF  M  + V PD+ T+ ++     ++  
Sbjct: 289 VFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGA 348

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L +G  +     +   +  V L N+L+ M+ KCG     + +F EM  R + SW      
Sbjct: 349 LELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSW------ 402

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                       T+MI G   +G   EA+++F EM ++  ++P+
Sbjct: 403 ----------------------------TSMIVGLAMHGRGLEAVLVFDEM-MEQGVDPD 433

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            V+ + VL  CS    +  G          F+I  ++ H       ++DM S+ G ++ A
Sbjct: 434 DVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEH----YGCMVDMLSRAGRVNEA 489

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
                      + + W SIV+    H +G
Sbjct: 490 LEFVRAMPVEPNQVIWRSIVT--ACHARG 516


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 181/567 (31%), Positives = 293/567 (51%), Gaps = 65/567 (11%)

Query: 24  QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83
           QH   +    + L   ++ H+Q+L  G   +P  ++KLI++YAL  +   S+ +F S  +
Sbjct: 59  QHLASLPHGLQHLHHVQELHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPN 118

Query: 84  KD--VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS------------- 128
                +L N+L+  Y  N   + A+ LFS M   +     F +  +S             
Sbjct: 119 PQATTFLPNTLLRAYALNALPHAAVSLFSAMPQRDSFTYSFLIKALSSSGLTPLRAVHSH 178

Query: 129 --KLSGEIKDLNVG-MLIHGLSIKIGFV-------------------------------- 153
             KL G I+D  VG  LI   S   GF+                                
Sbjct: 179 VVKL-GSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVAS 237

Query: 154 ----------VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
                      D +  N+++  Y K GK  +   LF  MP+RNV SW+  +SG+   GD 
Sbjct: 238 ARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDI 297

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
            +   +R +FD+M  +N+  WT M++   QNG ++EA  LF +M+ +  +E +  ++VS+
Sbjct: 298 EM---ARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMK-EAAVELDVAAVVSI 353

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           L  C+    L+ GK+IH +   ++L     +CNA+IDM+ KCG ++ A  VF+     KD
Sbjct: 354 LAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKD 413

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
           +++W++I+ G+ +HG G +A+  + +M   G +PD +T++ VLSAC   G + EG + ++
Sbjct: 414 SVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFS 473

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           ++   Y I P  E   C++D+LGR G ++ A+  IK+MP +P+  IWG+L+SA  +H N 
Sbjct: 474 NMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNV 533

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           E  ++A   L +L+P N  NY  LSN+YA + +W  +A+ R  MK  G +KS G SWI +
Sbjct: 534 EYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWIEL 593

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDL 530
               H F+V D+ H  S  I EM+D L
Sbjct: 594 DEAFHEFTVGDRKHSDSDQISEMVDRL 620



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 4/166 (2%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           A V   L   A   SL L K+ H  + +     +  V   +I  +  CG   ++  VF++
Sbjct: 348 AAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDT 407

Query: 81  -IQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            I  KD   +N++I G+   HGH ++AL+ F+ M      PD  T+  +      +  + 
Sbjct: 408 EIAEKDSVSWNTIIGGFAM-HGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVE 466

Query: 139 VGML-IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
            G      +    G V  +     ++ +  + G   E + L   MP
Sbjct: 467 EGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMP 512


>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
 gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
          Length = 528

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 172/509 (33%), Positives = 275/509 (54%), Gaps = 22/509 (4%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYAL-CGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           L   KQ  S + +LGH    F + KLI   +L       +  +FN I   ++YL+ ++I 
Sbjct: 19  LNQLKQLQSHLTTLGHSQTHFYAFKLIRFCSLNLSNLHYAHQIFNHIHSPNIYLFTAIIT 78

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
            +      +   +LF  M  SN+ P++F    + K    +K+  +  L+H   +K GF+ 
Sbjct: 79  AFSSQQ--HTTFKLFKTMLNSNIRPNNFIYPHVLK---SVKERFLVDLVHAQIVKCGFLN 133

Query: 155 DVILANSLMSMYVKC-GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
             ++  SL+  Y K  G   +   +FDEM +RN+  + V +SG+   GD   V +   VF
Sbjct: 134 YPVVETSLVDSYSKVLGGLRDAHKVFDEMSERNIVVFTVLVSGYLRVGD---VEKGLMVF 190

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI---------EPNKVSLVSVL 264
           D+M  R+V AW A+I+G  QNG   E + LF EM     +         +PN+V++V VL
Sbjct: 191 DEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVTVVCVL 250

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             C     L  GK IHG+  R     D  + NAL+DMY KCGSL+ AR+VFE     K  
Sbjct: 251 SACGHGGMLQLGKWIHGYVYRHGFVVDSFVSNALVDMYGKCGSLELARKVFEMDQ-RKGL 309

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINEGLEIY 382
            +W+S+++ Y LHGK  +A+  + KMV  G   +PD +T +G+L+AC   GL+ +G   +
Sbjct: 310 TSWNSMINCYALHGKCEDAITFFEKMVECGGGVRPDEVTFIGLLNACTHGGLVEQGCGYF 369

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
             +I  Y I+P      C++D+LGRAGQ D A+D +K M +EP   +WG+L++   +HG 
Sbjct: 370 EMMIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGR 429

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
           +++ + A K L++++P N      L+N+Y    +WD +  + + +K +   K PGCSWI 
Sbjct: 430 TDLAEFAAKKLVEIDPHNGGYGTMLANIYGQLGKWDEMRNVWSKLKQQKSYKIPGCSWIE 489

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           +  K H F   D+++P +  +Y +L+ L 
Sbjct: 490 VDDKVHQFFSLDQSNPKTEELYNILESLF 518


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 174/483 (36%), Positives = 272/483 (56%), Gaps = 14/483 (2%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++ AY   G+   +  +FN +  +D   +N L+ G V++     A ++F  M   +V   
Sbjct: 141 MLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCGLVRSGSLERARKMFERMPVRDVMSW 200

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
              ++ +++ +G + D  V  L   +  +     +V+  N+++S Y +  +  E L+LF 
Sbjct: 201 TTMISGLAR-NGSVDDAWV--LFDAMPER-----NVVSWNAMISGYARNHRIEEALDLFT 252

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           +MP R+V SWN+ I+G   + D      +R++FD+M +RNV  WT M+NGY+Q    + A
Sbjct: 253 KMPIRDVASWNIMITGFIQNKDLK---SARQLFDEMPKRNVITWTTMMNGYLQCMQSEMA 309

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF  M ++  I+PN+V+ +  L  CS+L  L  G+Q+H    +     D  + + L++
Sbjct: 310 LKLFNCMLVQG-IQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMN 368

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           +Y+KCG +  AR VF D S  KD I+W+ I++ Y  HG G EA+ LY  M   G KP+  
Sbjct: 369 LYAKCGEIRLARNVF-DFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDA 427

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T VG+LSAC  +GL++EGL+I+ S++    I    E   C+VD+  RAG+L+ A   I  
Sbjct: 428 TYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISW 487

Query: 421 MPVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
             ++P+ S +W AL+     HGN  + DLA K L++ EP+N   Y  L N+YAS+ +W  
Sbjct: 488 FKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYTLLCNIYASAGKWKE 547

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539
            AE+R+ M  RGLKK PGCSWI +  K H F   DK+H  S  I ++L D+  IMR A  
Sbjct: 548 AAEIRSEMNVRGLKKQPGCSWIEVANKVHVFVSRDKSHSESDLINDLLQDIHRIMRMAGT 607

Query: 540 SPH 542
            P 
Sbjct: 608 VPR 610



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 196/426 (46%), Gaps = 61/426 (14%)

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           +   A  G+ + ++ +F+ +  +DV  + +++  Y +     EA  LF         PD 
Sbjct: 48  VAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR-------PDA 100

Query: 122 F--TLATISKLSGEIKDLNVG---MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
               +   + LSG  +   V     L  G++ +     +V+  N+++  Y   G+  +  
Sbjct: 101 RRNVVTWTALLSGYARARRVDEAEALFEGMAER-----NVVSWNTMLEAYTAVGRVEDAS 155

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
            LF+ MP R+ GSWN+ + G   SG      R+R++F++M  R+V +WT MI+G  +NG 
Sbjct: 156 ALFNRMPVRDAGSWNILLCGLVRSGSLE---RARKMFERMPVRDVMSWTTMISGLARNGS 212

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN------- 289
           +D+A VLF  M  ++ +  N +              +SG  + H   I + L+       
Sbjct: 213 VDDAWVLFDAMPERNVVSWNAM--------------ISGYARNH--RIEEALDLFTKMPI 256

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            DV+  N +I  + +   L  AR++F D    ++ ITW+++++GY    +   A+ L+N 
Sbjct: 257 RDVASWNIMITGFIQNKDLKSARQLF-DEMPKRNVITWTTMMNGYLQCMQSEMALKLFNC 315

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M+  G +P+ +T +G L AC     + EG +++  +  T   +  T + + ++++  + G
Sbjct: 316 MLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPS-QFDTFVESTLMNLYAKCG 374

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHG--------NSEMQDLAYKSLIQLEPENP 461
           ++  A +      +E     W  +++A   HG           MQ+  YK        N 
Sbjct: 375 EIRLARNVFD-FSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKP-------ND 426

Query: 462 SNYVSL 467
           + YV L
Sbjct: 427 ATYVGL 432



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 128/284 (45%), Gaps = 47/284 (16%)

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           N R++  A++G  S    +RR+FD M  R+V +WTAM+  Y + G L EA VLF      
Sbjct: 45  NWRVAELAAAGRVS---DARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLF------ 95

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQI-------HGFAIRKELNHDVSLCNALIDMYS 303
           DR +  +    +V+   + L G +  +++        G A R     +V   N +++ Y+
Sbjct: 96  DRPDARR----NVVTWTALLSGYARARRVDEAEALFEGMAER-----NVVSWNTMLEAYT 146

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
             G ++ A  +F      +DA +W+ ++ G    G    A  ++ +M       D+++  
Sbjct: 147 AVGRVEDASALFNRMPV-RDAGSWNILLCGLVRSGSLERARKMFERMPV----RDVMSWT 201

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTM 421
            ++S   R+G +++   +++++       P   + +   ++    R  +++ ALD    M
Sbjct: 202 TMISGLARNGSVDDAWVLFDAM-------PERNVVSWNAMISGYARNHRIEEALDLFTKM 254

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
           P+    S W  +++  +       Q+   KS  QL  E P   V
Sbjct: 255 PIRDVAS-WNIMITGFI-------QNKDLKSARQLFDEMPKRNV 290



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 114/270 (42%), Gaps = 29/270 (10%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H  I       + FV + L+  YA CG+   ++ VF+    KD+  +N +I  Y  +
Sbjct: 345 QQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYA-H 403

Query: 100 HGHN-EALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVD-- 155
           HG   EA+ L+ NM  +   P+D T +  +S  S      + G++  GL I    V D  
Sbjct: 404 HGFGIEAMHLYKNMQENGYKPNDATYVGLLSACS------HAGLVDEGLKIFESMVKDNS 457

Query: 156 VILANS----LMSMYVKCGKFSECLNLFDEMPQRNVGS--WNVRISGHASSGDFSLVVRS 209
           +++ +     L+ +  + G+  +   L      +   S  W+  + G  S G+ S+   +
Sbjct: 458 IVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLA 517

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
            +   + +  N   +T + N Y   G   EA  +  EM ++          +   P CS 
Sbjct: 518 AKHLLEAEPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRG---------LKKQPGCS- 567

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
              +    ++H F  R + + +  L N L+
Sbjct: 568 --WIEVANKVHVFVSRDKSHSESDLINDLL 595


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 171/509 (33%), Positives = 279/509 (54%), Gaps = 36/509 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A  + LKL  Q     +  G  S+  + T LI+ ++ CG+   ++L+F  I
Sbjct: 33  TVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEI 92

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KD+   N++I+G+  N    +++ LF  +  S       T+  +  +        +  
Sbjct: 93  RKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCN 152

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IHG  +K+G V    ++ +L ++Y +           +EM                   
Sbjct: 153 CIHGFCVKLGIVSHSSVSTALTTVYCR----------LNEM------------------- 183

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                + +R++FD+   + + +W AMI+G  QNG  D A+ LF  MQ K+ + PN V++ 
Sbjct: 184 -----IFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQ-KNNVNPNPVTVT 237

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C+ +  LS G+ +H          +V +  ALIDMY+KCGS+  AR +F D    
Sbjct: 238 SILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELF-DLMPE 296

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K+ +TW++++SGYGLHG G EA+ L+  M+    KP  +T + VL AC  +GL+ EG  I
Sbjct: 297 KNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGI 356

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++++++ +  +P  E  AC+VD+LGRAGQL +AL+FIK MPVEP P +WGAL+ A ++H 
Sbjct: 357 FHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHK 416

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           ++ +  +A + L +L+PEN   YV +SN+Y+  R++   A +R + K + L K+PGC+ I
Sbjct: 417 DTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLI 476

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            I    H F+  D++HP S +IY  LD L
Sbjct: 477 EIGQVPHVFTSGDQSHPQSKAIYAELDKL 505



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 187/409 (45%), Gaps = 49/409 (11%)

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKI 150
           +I+G+VKN    +++ +F +M   N    D T +  +     E+++L +GM I  L+IK 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           GF   V L   L+S++ KCG+      LF E+ ++++ S N  IS               
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMIS--------------- 105

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
                              G+  NG+ ++++ LF E+ L      +  ++V ++P  S  
Sbjct: 106 -------------------GFTCNGETEDSVRLFKEL-LSSGERVSSSTIVGLIPVYSPF 145

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
                   IHGF ++  +    S+  AL  +Y +   +  AR++F++S+  K   +W+++
Sbjct: 146 GHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESA-EKTLASWNAM 204

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           +SG   +G    A+ L+  M      P+ +T+  +LSAC + G ++ G E  +S+I + R
Sbjct: 205 ISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLG-EWVHSLIKSNR 263

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQDLA 449
            +    +   ++DM  + G +  A +    MP E +   W A++S   +HG+  E   L 
Sbjct: 264 FESNVYVSTALIDMYAKCGSITVARELFDLMP-EKNEVTWNAMISGYGLHGHGQEALKLF 322

Query: 450 YKSLIQLEPENPSNYVSLSNLYASS-----RRWDAVAELRTMMKDRGLK 493
           Y  L       P+    LS LYA S     +  D +    TM+ D G +
Sbjct: 323 YDMLSS--SVKPTGLTFLSVLYACSHAGLVKEGDGI--FHTMVHDFGFE 367



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 140/331 (42%), Gaps = 44/331 (13%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L +    +S+T+   + V +      L    H   + LG +S+  VST L T Y    + 
Sbjct: 124 LSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEM 183

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             ++ +F+    K +  +N++I+G  +N   + A+ LF  M  +NV+P+  T+ +I    
Sbjct: 184 IFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSAC 243

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
            +I  L++G  +H L     F  +V ++ +L+ MY KCG  +    LFD MP++N  +WN
Sbjct: 244 AQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWN 303

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                                             AMI+GY  +G   EAL LF +M L  
Sbjct: 304 ----------------------------------AMISGYGLHGHGQEALKLFYDM-LSS 328

Query: 252 RIEPNKVSLVSVLPTCS--SLIGLSGG---KQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
            ++P  ++ +SVL  CS   L+    G     +H F       H       ++D+  + G
Sbjct: 329 SVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYA----CMVDILGRAG 384

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            L  A    +          W +++    +H
Sbjct: 385 QLKKALEFIKAMPVEPGPPVWGALLGACMIH 415



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 10/221 (4%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           N    TV   L   A   +L L +  HS I S    SN +VST LI  YA CG  T ++ 
Sbjct: 230 NPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARE 289

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATI---SKLSG 132
           +F+ +  K+   +N++I+GY   HGH  EAL+LF +M  S+V P   T  ++      +G
Sbjct: 290 LFDLMPEKNEVTWNAMISGY-GLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAG 348

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWN 191
            +K+ +   + H +    GF         ++ +  + G+  + L     MP +     W 
Sbjct: 349 LVKEGD--GIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWG 406

Query: 192 VRISGHASSGDFSLV-VRSRRVFDQMKRRNVYAWTAMINGY 231
             +       D +L  V S ++F ++   N+  +  M N Y
Sbjct: 407 ALLGACMIHKDTNLAHVASEKLF-ELDPENIGYYVLMSNIY 446


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 174/482 (36%), Positives = 270/482 (56%), Gaps = 44/482 (9%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           ++  LI  Y+  G+  +++ VF+ ++ KDV  + ++I   V +    +A+E +  M    
Sbjct: 336 MNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEG 395

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           + PD+ TL ++      I  L++G+ +H ++IK G V  VI++NSL+ MY KC      L
Sbjct: 396 ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNAL 455

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
            +F     RN       ISG                      +NV +WT++I G   N  
Sbjct: 456 EVF-----RN-------ISG----------------------KNVVSWTSLILGLRINNR 481

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
             EAL+ F   Q+K+ ++PN V+L+SVL  C+ +  L  GK+IH  A+R  +  D  L N
Sbjct: 482 SFEALLFF--RQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN 539

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFN---KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           A++DMY +CG     R+V   + FN   KD   W+ +++GY   G+   AV L++KM+ L
Sbjct: 540 AILDMYVRCG-----RKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL 594

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
              PD IT + +L AC +SG++ EGLE +N + N Y + P  +  ACVVD+LGRAGQLD 
Sbjct: 595 EIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDD 654

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A DFI+ MP+ P  +IWGAL++A  +H N E+ ++A K + + + ++   Y+ L NLYA 
Sbjct: 655 AYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAG 714

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
              WD V+++R++M++RGL   PGCSW+ I GK H F   D +H  S  I  +LD     
Sbjct: 715 CGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSK 774

Query: 534 MR 535
           M+
Sbjct: 775 MK 776



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 227/481 (47%), Gaps = 72/481 (14%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L++ +   G    +  VF  +  +DV+ +N L+ GY K    +EAL L+  M ++ + P+
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPN 197

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            +T  ++ K    + D+  G  IH   I+ GF  DV + N+L++MYVKCG  S    LFD
Sbjct: 198 VYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFD 257

Query: 181 EMPQRNVGSWNVRISGHASSGD-------FSL---------------VVRSRRVFDQMK- 217
           +MP+R+  SWN  ISG+  +G        FS+               V  +  + D  + 
Sbjct: 258 KMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERL 317

Query: 218 RRNVYAWT-------------AMINGYVQNGDLDEALVLFLEMQLKDRIE---------- 254
            R V+ +              ++I  Y   G L+EA  +F  M+ KD +           
Sbjct: 318 GRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVS 377

Query: 255 --------------------PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
                               P++++LVSVL  C+ +  L  G ++H  AI+  L   V +
Sbjct: 378 HKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIV 437

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            N+LIDMYSKC  +D A  VF + S  K+ ++W+S++ G  ++ +  EA+L + +M    
Sbjct: 438 SNSLIDMYSKCKCVDNALEVFRNIS-GKNVVSWTSLILGLRINNRSFEALLFFRQMK-ES 495

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
            KP+ +T++ VLSAC R G +  G EI+   + T  +     +   ++DM  R G+   A
Sbjct: 496 MKPNSVTLISVLSACARIGALMRGKEIHAHALRT-GVGFDGFLPNAILDMYVRCGRKVPA 554

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           L+   +   +   + W  L++     G +++    +  +++LE  +P     +S L A S
Sbjct: 555 LNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEI-HPDEITFISLLCACS 611

Query: 475 R 475
           +
Sbjct: 612 K 612



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 140/287 (48%), Gaps = 42/287 (14%)

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V L N+L+SM+V+ G      NL D        +W                     VF +
Sbjct: 132 VRLGNALLSMFVRFG------NLLD--------AW--------------------YVFGK 157

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  R+V++W  ++ GY + G  DEAL L+  M L   I PN  +  SVL TC+ +  ++ 
Sbjct: 158 MSERDVFSWNVLVGGYAKAGCFDEALNLYHRM-LWAEIRPNVYTFPSVLKTCAGVSDIAR 216

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK+IH   IR     DV + NALI MY KCG +  AR +F D    +D I+W++++SGY 
Sbjct: 217 GKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF-DKMPKRDRISWNAMISGYF 275

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE--GLEIYNSVINTYRIKP 393
            +G G E + L++ M  L   PD+IT+  V SAC    L NE  G  ++  V+ +     
Sbjct: 276 ENGGGLEGLELFSMMRELSVDPDLITMTTVASAC--ELLDNERLGRGVHGYVVKS-EFGG 332

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
              +   ++ M    G+L+ A      M  +   S W A++++ V H
Sbjct: 333 DISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVS-WTAMIASLVSH 378



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 38/317 (11%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A    L L  + H   +  G +S+  VS  LI  Y+ C     +  VF +I
Sbjct: 402 TLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNI 461

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             K+V  + SLI G   N+   EAL  F  M  S + P+  TL ++      I  L  G 
Sbjct: 462 SGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARIGALMRGK 520

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH  +++ G   D  L N+++ MYV+CG+    LN F+   +++V +WN+ ++G+A  G
Sbjct: 521 EIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQG 579

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
              L V    +FD+M                            LE++    I P++++ +
Sbjct: 580 QAKLAV---ELFDKM----------------------------LELE----IHPDEITFI 604

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           S+L  CS    ++ G +       K  L  ++     ++D+  + G LD A    +D   
Sbjct: 605 SLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPI 664

Query: 321 NKDAITWSSIVSGYGLH 337
             DA  W ++++   +H
Sbjct: 665 RPDAAIWGALLNACRIH 681



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 23/232 (9%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   K+ H+  L  G   + F+   ++  Y  CG+   +   FN
Sbjct: 500 SVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFN 559

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           S Q KDV  +N L+ GY +      A+ELF  M    + PD+ T   IS L    K    
Sbjct: 560 S-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF--ISLLCACSKS--- 613

Query: 140 GMLIHGLSI------KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNV 192
           GM+  GL        K     ++     ++ +  + G+  +  +   +MP R +   W  
Sbjct: 614 GMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGA 673

Query: 193 -----RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
                RI  +   G+    + ++RVF++   ++V  +  + N Y   G+ D+
Sbjct: 674 LLNACRIHRNVELGE----IAAKRVFEK-DNKSVGYYILLCNLYAGCGNWDK 720


>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 515

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 174/501 (34%), Positives = 277/501 (55%), Gaps = 13/501 (2%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNSLI 93
           +K TKQ H+  ++       ++S++++  +AL   G    ++ +F  I + +++ YNS+I
Sbjct: 1   MKQTKQIHAHAITNNLTRFSYISSRILAFFALSPRGDFRYAETLFTHIPNPNIFDYNSII 60

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
             Y  N   ++   +F+ M  +N+ P+  T  T+ K    +  L     +  LS+K+G  
Sbjct: 61  TSYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLVKACVSLSSLE---QVFTLSMKLGNS 117

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV   +S+++ + K         +FDE   RNV  W   +SG+ S G   LV  +R VF
Sbjct: 118 SDVYFVSSVINAFSKHSAIHLARQVFDECSNRNVVCWTSLVSGYCSCG---LVNEARDVF 174

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR----IEPNKVSLVSVLPTCSS 269
           D+M  RN  +++AM++GYV+NG   E + LF E++ KD+    ++ N   LVSVL  C+ 
Sbjct: 175 DKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCACLKFNGALLVSVLNACTM 234

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           +     GK IH +     L +D+ L  ALID Y KCG +  A +VF      KD  TWS+
Sbjct: 235 VGAFEEGKWIHSYVEENGLEYDLELGTALIDFYMKCGWVKGAEKVFNKMPV-KDVATWSA 293

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++ G  ++G    A+ L+ KM  +G KP+ +T VGVL+AC    L  E   ++  +   Y
Sbjct: 294 MILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESARLFGIMSEKY 353

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I P+ E   CVVD+L R+GQ+ +AL FI +M +EP  +IWG+L++  +MHG+ E+    
Sbjct: 354 NITPSIEHYGCVVDVLARSGQVKKALTFINSMHIEPDGAIWGSLLNGCLMHGHYELGQKV 413

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            K LI+ EP++   YV L+N+YA+  +W+ V+E+R +MKDRG+    G S+I I    H 
Sbjct: 414 GKYLIEFEPKHSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVMIVSGWSFIEIDQTIHK 473

Query: 510 FSVADKAHPCSVSIYEMLDDL 530
           F   DK    S  IY++L  L
Sbjct: 474 FFADDKCCLYSREIYDVLSHL 494


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 171/517 (33%), Positives = 284/517 (54%), Gaps = 39/517 (7%)

Query: 29  VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI--QHKDV 86
           ++A    + L +Q HS   S G  S   V   L+T Y+  G   ++++VFN +  + +D 
Sbjct: 147 ITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDE 206

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NS+I  Y ++    +AL L+ +M +     D FTLA++      ++DL+ G+  H  
Sbjct: 207 VSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAK 266

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           +IK GF  +  + + L+ MY KCG                                 + +
Sbjct: 267 AIKTGFNKNRHVGSGLIDMYAKCG---------------------------------AGM 293

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD-EALVLFLEMQLKDRIEPNKVSLVSVLP 265
             SR+VF+++   ++  W  MI+GY QN +L  EAL  F +MQ +    P+  S V  + 
Sbjct: 294 SESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQ-RAGYWPDDCSFVCAIS 352

Query: 266 TCSSLIGLSGGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            CS+L   S GKQ H  A++ E+ ++ +S+ NAL+ MYSKCG+L  AR++F+      + 
Sbjct: 353 ACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMP-QHNT 411

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           +T +SI++GY  HG G E++ L+ +M+     P  IT+V +LSAC  +G + EG + +N 
Sbjct: 412 VTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNM 471

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           + + + I+P  E  +C++D+LGRAG+L  A   I TMP  P  + W AL+ A   +GN E
Sbjct: 472 MKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNME 531

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           + + A    +QLEP N   Y+ L+++Y+++R+W+  A +R +M+DRG++K PGCSWI ++
Sbjct: 532 LAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELN 591

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            + H F   D +HP    I+  LD++ + M+ A   P
Sbjct: 592 KRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVP 628



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 123/509 (24%), Positives = 220/509 (43%), Gaps = 67/509 (13%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           +T  ++T  + +  L+    ++ L   K  H+  L     S+ ++S   I  Y+ C   T
Sbjct: 1   MTQFSWTLQSFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLT 60

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLA------ 125
            +   FN     +V+ +N+LI  Y K    + A  LF  +   + VS +    A      
Sbjct: 61  TAHHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGD 120

Query: 126 TISKLS--GEIKDL------------------NVGML--IHGLSIKIGFVVDVILANSLM 163
           T+S LS  GE++++                  +VG++  +H L+   GF   V + NSL+
Sbjct: 121 TLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLL 180

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
           + Y K G   E   +F+ M +                                + R+  +
Sbjct: 181 TYYSKNGILEEAEMVFNGMGE--------------------------------EVRDEVS 208

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           W +MI  Y Q+    +AL L+ +M +    E +  +L SVL T S +  LSGG Q H  A
Sbjct: 209 WNSMIVAYGQHKRGLKALALYRDM-VHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKA 267

Query: 284 IRKELNHDVSLCNALIDMYSKCGS-LDCARRVFEDSSFNKDAITWSSIVSGYGLHGK-GH 341
           I+   N +  + + LIDMY+KCG+ +  +R+VFE+     D + W++++SGY  + +   
Sbjct: 268 IKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEIC-GSDLVVWNTMISGYSQNKELSV 326

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           EA+  + +M   G  PD  + V  +SAC      ++G + +   + +        +   +
Sbjct: 327 EALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNAL 386

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG-NSEMQDLAYKSLIQLEPEN 460
           V M  + G L  A    + MP   + ++  ++++    HG  +E  +L  + L       
Sbjct: 387 VTMYSKCGNLQDARKLFQRMPQHNTVTL-NSIIAGYAQHGIGTESLNLFEQMLAASIAPT 445

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKD 489
               VS+ +  A + R +   +   MMKD
Sbjct: 446 SITLVSILSACAHTGRVEEGKKYFNMMKD 474


>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 176/511 (34%), Positives = 282/511 (55%), Gaps = 20/511 (3%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           S +   + H+QI+  G     ++   L++ Y   G    +Q VF  I      ++N +I 
Sbjct: 39  SFRNLAKIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIK 98

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G+ ++    +++ELF  M  + V  + FT + +       +    G  IHG  +  G+  
Sbjct: 99  GHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWS 158

Query: 155 DVILANSLMSMYVKCGK-----FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           ++ +  +L+++Y   G            LFDEMP  NV  WN  ++G+   GDF     +
Sbjct: 159 NLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFD---GA 215

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           R+VFD+M  RNV  WT M+ G+ QNG    AL LF +M+ +  +E ++V+LV+ L  C+ 
Sbjct: 216 RKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMR-RAGVELDQVALVAALSACAE 274

Query: 270 LIGLSGGKQIHGFAIR----KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
           L  L+ GK IHG+  R    + L   VSL NALI MY+ CG +D A +VFE+    ++ +
Sbjct: 275 LGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIP-QRNTV 333

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGS---KPDIITIVGVLSACGRSGLINEGLEIY 382
           +WSSI++G+   G G EA+ ++  M+C G    +PD IT +G L+AC  +GLI++G+ ++
Sbjct: 334 SWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLF 393

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            S+  T+ + P  E   C+VD+L RAG L  AL  I++MP++P+ ++WGAL+S   +H N
Sbjct: 394 QSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKN 453

Query: 443 SEMQDLAYKSL-IQLEPENPSN--YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
            E+     K L  ++ P N +   ++ L+N+YA+  RW   A +R  M D G+KK  G S
Sbjct: 454 DEIVSHVAKHLSFEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRS 513

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           WI I+G    F V ++ H     IYEML ++
Sbjct: 514 WIEINGVLCSFMVGEETHKDVNLIYEMLGNI 544


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 189/607 (31%), Positives = 304/607 (50%), Gaps = 77/607 (12%)

Query: 8   NTFALVTSR--NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           N F  +T    N++  T+   L+  A   +L+  +  HS  + +G   + F+S  L+  Y
Sbjct: 316 NLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMY 375

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125
           + CG    +  VF  I+  DV  ++++I    +     EA E+F  M +S V P+ FTLA
Sbjct: 376 SKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLA 435

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           ++   + ++ DL  G  IH    K GF  D  + N+L++MY+K G   +   +F+    R
Sbjct: 436 SLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNR 495

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAW----------------- 224
           ++ SWN  +SG     D        R+F+QM       N+Y +                 
Sbjct: 496 DLISWNALLSGFH---DNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGK 552

Query: 225 ------------------TAMINGYVQNGDLDEALVL----------------------- 243
                             TA+++ Y +N  L++A  +                       
Sbjct: 553 QVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDG 612

Query: 244 --------FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
                   F++MQ ++ ++PN+ +L S L  CS +  L  G+Q+H  AI+   + D+ + 
Sbjct: 613 QGEKAVKCFIQMQ-REGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVA 671

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           +AL+DMY+KCG ++ A  VF D   ++D ++W++I+ GY  HG+G +A+  +  M+  G+
Sbjct: 672 SALVDMYAKCGCVEDAEVVF-DGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 730

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
            PD +T +GVLSAC   GLI EG + +NS+   Y I PT E  AC+VD+LGRAG+     
Sbjct: 731 VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE 790

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
            FI+ M +  +  IW  ++ A  MHGN E  + A   L +LEPE  SNY+ LSN++A+  
Sbjct: 791 SFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKG 850

Query: 476 RWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            WD V  +R +M  RG+KK PGCSW+ ++G+ H F   D +HP    I+  L DL   + 
Sbjct: 851 MWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLM 910

Query: 536 GAAASPH 542
               +P+
Sbjct: 911 SVGYTPN 917



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 220/465 (47%), Gaps = 46/465 (9%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V +  +T AT    L+  +    L+  KQ H++ + +G  S+ FV + L+  YA CG+  
Sbjct: 225 VEANEFTYATA---LKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMV 281

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            ++ VF  +  ++   +N+L+NG+ +     + L LF  M  S ++   FTL+T+ K   
Sbjct: 282 LAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCA 341

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
              +L  G ++H L+I+IG  +D  ++  L+ MY KCG   + L +F            V
Sbjct: 342 NSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVF------------V 389

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
           RI                      +  +V +W+A+I    Q G   EA  +F  M+    
Sbjct: 390 RI----------------------EDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGV 427

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           I PN+ +L S++   + L  L  G+ IH    +    +D ++CNAL+ MY K GS+    
Sbjct: 428 I-PNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGC 486

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           RVFE ++ N+D I+W++++SG+  +      + ++N+M+  G  P++ T + +L +C   
Sbjct: 487 RVFEATT-NRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSL 545

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
             ++ G +++  ++    +     +   +VDM  +   L+ A      + ++     W  
Sbjct: 546 SDVDLGKQVHAQIVKN-SLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTV 603

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYVSLSNLYASSR 475
           +V+     G  E    A K  IQ++ E   P+ +   S+L   SR
Sbjct: 604 IVAGYAQDGQGEK---AVKCFIQMQREGVKPNEFTLASSLSGCSR 645



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 129/455 (28%), Positives = 201/455 (44%), Gaps = 53/455 (11%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A+   L   K  H Q++  G   +  +   L+  YA CG    +  VF  I  +DV
Sbjct: 135 LRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDV 194

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             + +LI G+V     + A+ LF  M    V  ++FT AT  K      DL  G  +H  
Sbjct: 195 VSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAE 254

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           +IK+G   D+ + ++L+ +Y KCG+      +F  MP++N  SWN               
Sbjct: 255 AIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWN--------------- 299

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                              A++NG+ Q GD ++ L LF  M     I  +K +L +VL  
Sbjct: 300 -------------------ALLNGFAQMGDAEKVLNLFCRMT-GSEINFSKFTLSTVLKG 339

Query: 267 CSSLIGLSGGKQIHGFAIR--KELNHDVSLCNALIDMYSKCGSLDCARRVF---EDSSFN 321
           C++   L  G+ +H  AIR   EL+  +S C  L+DMYSKCG    A +VF   ED    
Sbjct: 340 CANSGNLRAGQIVHSLAIRIGCELDEFISCC--LVDMYSKCGLAGDALKVFVRIEDP--- 394

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
            D ++WS+I++     G+  EA  ++ +M   G  P+  T+  ++SA    G +  G  I
Sbjct: 395 -DVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESI 453

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  V   Y  +    +C  +V M  + G +       +        S W AL+S    H 
Sbjct: 454 HACVCK-YGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLIS-WNALLSG--FHD 509

Query: 442 NSEMQDLAYKSLIQLEPE--NPSNYVSLSNLYASS 474
           N E  D   +   Q+  E  NP+ Y  +S L + S
Sbjct: 510 N-ETCDTGLRIFNQMLAEGFNPNMYTFISILRSCS 543



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 95/182 (52%), Gaps = 3/182 (1%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           +L TC+S   L+ GK IHG  I+  +N D  L N+L+++Y+KCGS + A +VF +    +
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP-ER 192

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D ++W+++++G+   G G  AV L+ +M   G + +  T    L AC     +  G +++
Sbjct: 193 DVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVH 252

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
              I          + + +VD+  + G++  A      MP + + S W AL++     G+
Sbjct: 253 AEAIKVGDFSDLF-VGSALVDLYAKCGEMVLAERVFLCMPKQNAVS-WNALLNGFAQMGD 310

Query: 443 SE 444
           +E
Sbjct: 311 AE 312


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 174/507 (34%), Positives = 276/507 (54%), Gaps = 38/507 (7%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNSLING 95
           L  Q H QI  +G +  PFV T LI+ Y        ++ VF    H  K    YN+L++G
Sbjct: 58  LGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSG 117

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           YV N   ++A+ LF  M    V  +  TL  +        +L +G  +H  ++K GF  D
Sbjct: 118 YVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSD 177

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V + N  ++MY+KCG                                   V  ++++FD+
Sbjct: 178 VSVVNCFITMYMKCGS----------------------------------VNYAQKLFDE 203

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  + + +W AM++GY QNG     L L+  M + + + P+ V+LV VL +C++L   S 
Sbjct: 204 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDM-NGVHPDPVTLVGVLSSCANLGAQSV 262

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G ++           +  L NALI+MY++CG+L  A+ VF D    +  ++W++I+ GYG
Sbjct: 263 GHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVF-DGMPERTLVSWTAIIGGYG 321

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           +HG G  AV L+ +M+  G +PD    V VLSAC  +GL ++GLE +  +   Y+++P  
Sbjct: 322 MHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGP 381

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           E  +C+VD+LGRAG+L  A   I++MP++P  ++WGAL+ A  +H N E+ +LA++ +I+
Sbjct: 382 EHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE 441

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           LEPEN   YV LSN+Y+++     V  +R MMK++ LKK PGCS++ + G+ H F V D+
Sbjct: 442 LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDR 501

Query: 516 AHPCSVSIYEMLDDLILIMRGAAASPH 542
            H  S  IY +L++L  I+      P 
Sbjct: 502 NHLQSDEIYRVLEELEAIIMQEFGKPE 528



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 155/354 (43%), Gaps = 48/354 (13%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   +    +  +L+L    H   L  G  S+  V    IT Y  CG    +Q +F+
Sbjct: 143 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 202

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  K +  +N++++GY +N      LEL+ NM  + V PD  TL  +      +   +V
Sbjct: 203 EMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSV 262

Query: 140 GMLIHGLSIKI---GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           G   H +  K+   GF  +  L N+L++MY +CG  ++   +FD MP+R + SW      
Sbjct: 263 G---HEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSW------ 313

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                       TA+I GY  +G  + A+ LF EM ++  IEP+
Sbjct: 314 ----------------------------TAIIGGYGMHGHGEIAVQLFKEM-IRSGIEPD 344

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRK---ELNHDVSLCNALIDMYSKCGSLDCARR 313
             + V VL  CS   GL+  + +  F + K   +L       + ++D+  + G L  A+ 
Sbjct: 345 GTAFVCVLSACSH-AGLT-DQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQT 402

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           + E      D   W +++    +H     A L + +++ L  +P+ I    +LS
Sbjct: 403 LIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIEL--EPENIGYYVLLS 454


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 172/504 (34%), Positives = 275/504 (54%), Gaps = 37/504 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQSH++IL LG   + F ++ L+   AL   G    +  +F  +     + +N+++ G+V
Sbjct: 48  KQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHV 107

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           K+    EAL  +  M    V PD+FT  T+ K    +  +  GM +H   +K+G   DV 
Sbjct: 108 KDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVF 167

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + NSL+SMY KCG+   C                                    VF+QM 
Sbjct: 168 VQNSLISMYGKCGEIGVCCA----------------------------------VFEQMN 193

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            R+V +W+A+I  +   G   + L L  +M  +      +  LVSVL  C+ L  L  G+
Sbjct: 194 ERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGR 253

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            +HGF +R     +V +  +LI+MY KCGSL     +F+  +  K+ +++S ++SG  +H
Sbjct: 254 SVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMA-KKNKLSYSVMISGLAMH 312

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G G E + ++ +M+  G +PD I  VGVL+AC  +GL+ EGL+ +N +   + I+PT + 
Sbjct: 313 GYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQH 372

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             C+VD++GRAG++D AL+ IK+MP+EP+  +W +L+SAS +H N +  ++A K L +L+
Sbjct: 373 YGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLD 432

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
            +  S+YV LSN+YA ++RW+ VA+ RT M  +GL + PG S + +  K H F   D  H
Sbjct: 433 SQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGH 492

Query: 518 PCSVSIYEMLDDLILIMRGAAASP 541
           P S S+YEML  +   ++    SP
Sbjct: 493 PQSESVYEMLYQMEWQLKFEGYSP 516



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 8/178 (4%)

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM--YSKCGSLDCARRVFEDS 318
           VS+L  CS++      KQ H   ++  L  D    + L+     S  GS+D A  +F   
Sbjct: 35  VSLLKKCSNMEEF---KQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQM 91

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
                +  +++++ G+       EA++ Y +M   G KPD  T   +L AC R   + EG
Sbjct: 92  D-ELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEG 150

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           ++++  ++    ++    +   ++ M G+ G++       + M  E S + W AL++A
Sbjct: 151 MQVHAHILK-LGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMN-ERSVASWSALITA 206


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 172/519 (33%), Positives = 282/519 (54%), Gaps = 42/519 (8%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           ++  N+T   V  FL   A    +++ + +H ++  LG  ++      ++T Y  CG+  
Sbjct: 113 ISPNNFTFPFV--FL-ACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENG 169

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY-SNVSPDDFTLATISKLS 131
            ++ VF+ I  KD+  +NSL++GY K     EA+E+F  +   S   PD+ +L ++    
Sbjct: 170 VARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGAC 229

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
           GE+ DL +G  + G  ++ G  V+  + ++L+SMY KCG+                    
Sbjct: 230 GELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGE-------------------- 269

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                         +V SRR+FD M  R+   W A I+ Y QNG  DEA+ LF  M+ ++
Sbjct: 270 --------------LVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK-EN 314

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            ++PNKV+L +VL  C+S+  L  GKQ+  +A  + L HD+ +  ALIDMY+KCGSL+ A
Sbjct: 315 GVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESA 374

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG--SKPDIITIVGVLSAC 369
           +RVF D     DA +W++++S    HGK  EA+ L+ +M   G  ++P+ IT V +LSAC
Sbjct: 375 QRVFNDMPRKNDA-SWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSAC 433

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
             +GL++EG  +++ +   + + P  E  +C+VD+L RAG L  A D I+ MP +P    
Sbjct: 434 VHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVT 493

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489
            GAL SA     N ++ +   + L++L+P N  NY+  S +Y +   WD  A +R +M++
Sbjct: 494 LGALHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRE 553

Query: 490 RGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
            G+ K+PGCSWI +  +   F   D     S+ +  ++D
Sbjct: 554 NGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIID 592



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 203/413 (49%), Gaps = 45/413 (10%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ-HKDVYLYNSLI 93
           S K  +Q H+Q  ++  I  P     L++        T S L+F+ I  H + Y +N ++
Sbjct: 33  STKTLQQIHTQ-FTIHSIHKP---NHLLSQSISLKDFTYSTLIFSHITPHPNDYAFNIML 88

Query: 94  NGYVKN-HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
                  H +   L L+  M   N+SP++FT   +      ++++ +  L H    K+G 
Sbjct: 89  RATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGL 148

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             D    NS+++MY +CG+                       +G A           R+V
Sbjct: 149 DNDHHTVNSMVTMYFRCGE-----------------------NGVA-----------RKV 174

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
           FD++  +++ +W ++++GY + G   EA+ +F  ++ +   EP+++SLVSVL  C  L  
Sbjct: 175 FDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGD 234

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  G+ + GF + + +  +  + +ALI MYSKCG L  +RR+F D   ++D ITW++ +S
Sbjct: 235 LELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIF-DGMPSRDFITWNAAIS 293

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR-I 391
            Y  +G   EA+ L++ M   G  P+ +T+  VLSAC   G ++ G ++      T+R +
Sbjct: 294 AYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYA--THRGL 351

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +    +   ++DM  + G L+ A      MP +   S W A++SA   HG ++
Sbjct: 352 QHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDAS-WNAMISALASHGKAK 403


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 175/541 (32%), Positives = 280/541 (51%), Gaps = 67/541 (12%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+   + V++      L    H Q+L LG  +  FV + L+  YA  G    ++ VF
Sbjct: 145 TRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVF 204

Query: 79  NSIQHKDVYLYNSLINGYVK-------------------------------NHGHNEALE 107
             ++ K V +YN+LI G ++                               N    EAL+
Sbjct: 205 QEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALD 264

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           +F  M    V  D +T  +I    G +     G  IH    +  +  +V + ++L+ MY 
Sbjct: 265 VFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYS 324

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           KC                     ++R++                VF +M  RN+ +WTAM
Sbjct: 325 KCR--------------------SIRLA--------------EAVFRRMTCRNIISWTAM 350

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I GY QN   +EA+  F EMQ+ D I+P+  +L SV+ +C++L  L  G Q H  A+   
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQM-DGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 409

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
           L   +++ NAL+ +Y KCGS++ A R+F++ SF+ D ++W+++V+GY   GK  E + L+
Sbjct: 410 LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVTGYAQFGKAKETIDLF 468

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            KM+  G KPD +T +GVLSAC R+GL+ +G + ++S+   + I P  +   C++D+  R
Sbjct: 469 EKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSR 528

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           +G+   A +FIK MP  P    W  L+S+  + GN E+   A ++L++ +P+NP++YV L
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLL 588

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
            +++A+  +W  VA LR  M+DR +KK PGCSWI    K H FS  D++HP S  IYE L
Sbjct: 589 CSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648

Query: 528 D 528
           +
Sbjct: 649 E 649



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 214/473 (45%), Gaps = 26/473 (5%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F    L++A A        + +F S+  +D   YN+LI G+        +++L+  + 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 114 YS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
              +V P   TL+ +  ++  + D  +G  +H   +++GF     + + L+ MY K G  
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            +   +F EM  + V  +N  I+G        ++  ++ +F  M  R+   WT M+ G  
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRC---KMIEDAKGLFQLMVDRDSITWTTMVTGLT 254

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG   EAL +F  M+  + +  ++ +  S+L  C +L     GKQIH +  R     +V
Sbjct: 255 QNGLQLEALDVFRRMR-AEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNV 313

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            + +AL+DMYSKC S+  A  VF   +  ++ I+W++++ GYG +    EAV  +++M  
Sbjct: 314 FVGSALVDMYSKCRSIRLAEAVFRRMT-CRNIISWTAMIVGYGQNACSEEAVRAFSEMQM 372

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G KPD  T+  V+S+C     + EG + +   + +  ++  T +   +V + G+ G ++
Sbjct: 373 DGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYIT-VSNALVTLYGKCGSIE 431

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENPSNYVSLSNLY 471
            A      M      S W ALV+     G + E  DL  K L+      P     +  L 
Sbjct: 432 DAHRLFDEMSFHDQVS-WTALVTGYAQFGKAKETIDLFEKMLVN--GLKPDGVTFIGVLS 488

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           A SR               GL +  GC +     K H     D  + C + +Y
Sbjct: 489 ACSR--------------AGLVEK-GCDYFDSMQKDHDIVPIDDHYTCMIDLY 526



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 152/340 (44%), Gaps = 36/340 (10%)

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             L N L++ Y K G+ +    +FDEMP  N+ + N  +S  A S    LV    R+F  
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHS---RLVPDMERLFAS 104

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  R+  ++ A+I G+   G    ++ L+  +  ++ + P +++L +++   S+L   + 
Sbjct: 105 MPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRAL 164

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS---------------- 319
           G  +H   +R        + + L+DMY+K G +  ARRVF++                  
Sbjct: 165 GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLR 224

Query: 320 --------------FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
                          ++D+ITW+++V+G   +G   EA+ ++ +M   G   D  T   +
Sbjct: 225 CKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSI 284

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L+ACG      EG +I+  +  T+  +    + + +VDM  +   +  A    + M    
Sbjct: 285 LTACGALAASEEGKQIHAYITRTW-YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
             S W A++     +  SE    A+ S +Q++   P ++ 
Sbjct: 344 IIS-WTAMIVGYGQNACSEEAVRAF-SEMQMDGIKPDDFT 381


>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 170/497 (34%), Positives = 286/497 (57%), Gaps = 12/497 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLIT--AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ+H+Q+L  G  ++ FV ++L+   A +  G  + +  +F  IQH  + ++N++I   +
Sbjct: 22  KQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALL 81

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
                  A+ +FS ++ + + PD +TL  + K S  + ++++G  IH  +IK+G  V+  
Sbjct: 82  LRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEF 141

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + NSL+ MY           +FDEMP+ +  SW V I G+A+ GD   V  +R +FD   
Sbjct: 142 VGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGD---VDTARELFDMAT 198

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            ++   W AMI+GYVQN    E L +F  MQL + +EP++  +V++L  C+ +  L  G 
Sbjct: 199 VKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTE-VEPDEAIIVTILSACAHMGALDTGI 257

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            IH +  R  L   + +   LIDMY+KCG LD A+ +F + S  +D + W++++SG  + 
Sbjct: 258 WIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMS-QRDNVCWNAMISGMAMD 316

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G G  A+ L+ +M   G KPD IT + VL+AC  SG+++EG+ I+N +   ++I+P +E 
Sbjct: 317 GDGEGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEH 376

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPS----IWGALVSASVMHGNSEMQDLAYKSL 453
             CV+D+L R G+ + A   I+ +P   SPS     W A +SA   HG ++  ++A + L
Sbjct: 377 YGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERL 436

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
            QLE  + + YV LSN+YA+  + +    +R MMK +G++K PGCS I ++G  + F   
Sbjct: 437 FQLERHSGA-YVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAG 495

Query: 514 DKAHPCSVSIYEMLDDL 530
           +K H    +I+ +L++L
Sbjct: 496 EKTHRHIDNIHLVLEEL 512


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 173/481 (35%), Positives = 272/481 (56%), Gaps = 48/481 (9%)

Query: 65  YALC--GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
           + LC  G+  +++ +F+ +  + V  + +++ GY +N+  ++A ++F      +V P+  
Sbjct: 180 HGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIF------DVMPEKT 233

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
            ++  S L G                                 YV+ G+  +   LF+ M
Sbjct: 234 EVSWTSMLMG---------------------------------YVQNGRIEDAEELFEVM 260

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P + V + N  ISG    G+   + ++RRVFD MK RN  +W  +I  + +NG   EAL 
Sbjct: 261 PVKPVIACNAMISGLGQKGE---IAKARRVFDSMKERNDASWQTVIKIHERNGFELEALD 317

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302
           LF+ MQ K  + P   +L+S+L  C+SL  L  GKQ+H   +R + + DV + + L+ MY
Sbjct: 318 LFILMQ-KQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMY 376

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIIT 361
            KCG L  ++ +F D   +KD I W+SI+SGY  HG G EA+ ++ +M   GS KP+ +T
Sbjct: 377 IKCGELVKSKLIF-DRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVT 435

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
            V  LSAC  +G++ EGL+IY S+ + + +KP T   AC+VDMLGRAG+ + A++ I +M
Sbjct: 436 FVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSM 495

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
            VEP  ++WG+L+ A   H   ++ +   K LI++EPEN   Y+ LSN+YAS  RW  VA
Sbjct: 496 TVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVA 555

Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD-KAHPCSVSIYEMLDDLILIMRGAAAS 540
           ELR +MK R ++KSPGCSW  +  K H F+     +HP   SI ++LD+L  ++R A  +
Sbjct: 556 ELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYN 615

Query: 541 P 541
           P
Sbjct: 616 P 616



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 32/307 (10%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           NS+++ Y       +   LFDEMP RN+ SWN  +SG+  +G+      +R+VFD M  R
Sbjct: 52  NSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEID---EARKVFDLMPER 108

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV +WTA++ GYV NG +D A  LF +M      E NKVS   +      LIG     +I
Sbjct: 109 NVVSWTALVKGYVHNGKVDVAESLFWKMP-----EKNKVSWTVM------LIGFLQDGRI 157

Query: 280 HGFAIRKEL--NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
                  E+  + D     ++I    K G +D AR +F++ S  +  ITW+++V+GYG +
Sbjct: 158 DDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMS-ERSVITWTTMVTGYGQN 216

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
            +  +A  +++ M     +   ++   +L    ++G I +  E++        + P   +
Sbjct: 217 NRVDDARKIFDVM----PEKTEVSWTSMLMGYVQNGRIEDAEELFE-------VMPVKPV 265

Query: 398 CAC--VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            AC  ++  LG+ G++ +A     +M  E + + W  ++     +G  E++ L    L+Q
Sbjct: 266 IACNAMISGLGQKGEIAKARRVFDSMK-ERNDASWQTVIKIHERNG-FELEALDLFILMQ 323

Query: 456 LEPENPS 462
            +   P+
Sbjct: 324 KQGVRPT 330



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 14/172 (8%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+   L V A+  SL   KQ H+Q++      + +V++ L+T Y  CG+  +S+L+F
Sbjct: 330 TFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIF 389

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFT-LATISKLSGEIKD 136
           +    KD+ ++NS+I+GY  +    EAL++F  M  S +  P++ T +AT+S  S     
Sbjct: 390 DRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACS----- 444

Query: 137 LNVGMLIHGL----SIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEM 182
              GM+  GL    S++  F V  I A+   ++ M  + G+F+E + + D M
Sbjct: 445 -YAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSM 495


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 182/583 (31%), Positives = 303/583 (51%), Gaps = 55/583 (9%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           LV    +   T+   +Q  A   SLKL KQ H   +    + + ++   L+  Y+  G  
Sbjct: 254 LVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSL 313

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             S  +F S+ ++D  L+NS+I+ Y     H EA++LF  M    V  D+ T+  +  + 
Sbjct: 314 ESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMC 373

Query: 132 GEIKD-LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
            E+   L  G  +H   IK G  +D  L N+L+SMY +         +FD M   ++ SW
Sbjct: 374 EELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISW 433

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKR--------------------------RNVYAW 224
           N  I   A +   +L  ++  +F++M+                           R+++ +
Sbjct: 434 NTMILALARN---TLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGY 490

Query: 225 -------------TAMINGYVQNGDLDEALVLFLEMQLKDRI---------EPNKVSLVS 262
                        TA+ + Y+  GD   A  LF     +D I         EPN V++++
Sbjct: 491 VMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIXKAEPNSVTIIN 550

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRK--ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           VL + + L  L  G+ +H +  R+   L  D+SL NA I MY++CGSL  A  +F+    
Sbjct: 551 VLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLP- 609

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            ++ I+W+++++GYG++G+G +A+L +++M+  G +P+ +T V VLSAC  SG I  GL+
Sbjct: 610 KRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQ 669

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           +++S++  + + P     +C+VD+L R G +D A +FI +MP+EP  S+W AL+S+   +
Sbjct: 670 LFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAY 729

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
            +++     ++ L +LEP N  NYV LSN+YA++  W  V  +RT +K++GL+K PG SW
Sbjct: 730 SDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISW 789

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           I +  + HCFS  D++HP S  IY  L  L+  MR     P L
Sbjct: 790 IIVKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRETGYDPDL 832



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 183/372 (49%), Gaps = 41/372 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L+  A   +++  K  H  I     + +  V T ++  Y  CG    ++ VF+
Sbjct: 60  NTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFD 119

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           ++  +DV L+N+++ GYV    + EA+ L   M   N+ P+  T+  +        +L +
Sbjct: 120 AMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRL 179

Query: 140 GMLIHGLSIKIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           G  +HG  ++ G F  +  +A +L+  Y++       L LFD M  RN+ SWN  ISG+ 
Sbjct: 180 GRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LFDLMVVRNIVSWNAMISGYY 238

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
             GD+                                   +AL LF++M L D ++ + V
Sbjct: 239 DVGDYF----------------------------------KALELFVQM-LVDEVKFDCV 263

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +++  +  C+ L  L  GKQIH  AI+ E   D+ + NAL++MYS  GSL+ + ++FE S
Sbjct: 264 TMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFE-S 322

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR--SGLIN 376
             N+DA  W+S++S Y   G   EA+ L+ +M   G K D  T+V +LS C    SGL+ 
Sbjct: 323 VPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLL- 381

Query: 377 EGLEIYNSVINT 388
           +G  ++  VI +
Sbjct: 382 KGKSLHAHVIKS 393



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 187/417 (44%), Gaps = 41/417 (9%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVF 78
           S T+   L        L+L +  H   L  G   SNP V+T LI  Y L        L+F
Sbjct: 161 SRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFY-LRFDMRVLPLLF 219

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  +++  +N++I+GY     + +ALELF  M    V  D  T+    +   E+  L 
Sbjct: 220 DLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLK 279

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  IH L+IK  FV D+ + N+L++MY   G       LF+ +P R+   WN       
Sbjct: 280 LGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWN------- 332

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                      +MI+ Y   G  +EA+ LF+ MQ  + ++ ++ 
Sbjct: 333 ---------------------------SMISAYAAFGCHEEAMDLFIRMQ-SEGVKKDER 364

Query: 259 SLVSVLPTCSSLI-GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           ++V +L  C  L  GL  GK +H   I+  +  D SL NAL+ MY++   ++  +++F D
Sbjct: 365 TVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIF-D 423

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
                D I+W++++     +    +A  L+ +M     KP+  TI+ +L+AC     ++ 
Sbjct: 424 RMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDF 483

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           G  I+  V+  + I+    +   + DM    G    A D  +  P     S W A++
Sbjct: 484 GRSIHGYVMK-HSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLIS-WNAMI 538



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 159/373 (42%), Gaps = 47/373 (12%)

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           IQ KD   +NS+I            L  ++ M    V P++ TL  + K       +  G
Sbjct: 20  IQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERG 79

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             IH        + DV +  +++  Y KCG   +   +FD M  R+V  WN         
Sbjct: 80  KSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWN--------- 130

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                    AM+ GYV  G  +EA++L  EM  ++ + PN  ++
Sbjct: 131 -------------------------AMVYGYVGWGCYEEAMLLVREMG-RENLRPNSRTM 164

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFE--- 316
           V++L  C     L  G+ +HG+ +R  + + +  +  ALI  Y     L    RV     
Sbjct: 165 VALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFY-----LRFDMRVLPLLF 219

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D    ++ ++W++++SGY   G   +A+ L+ +M+    K D +T++  + AC   G + 
Sbjct: 220 DLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLK 279

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G +I+   I  +       I   +++M    G L+ +    +++P   +P +W +++SA
Sbjct: 280 LGKQIHQLAIK-FEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAP-LWNSMISA 337

Query: 437 SVMHG-NSEMQDL 448
               G + E  DL
Sbjct: 338 YAAFGCHEEAMDL 350


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 176/514 (34%), Positives = 264/514 (51%), Gaps = 37/514 (7%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-- 116
           T LIT  A CG+   ++++F  I    V  +N+LI GY++N   NEA ELF  M + N  
Sbjct: 326 TALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTI 385

Query: 117 -----------------------------VSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
                                        + P   +L +I      I  L  G  +H L+
Sbjct: 386 SWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLA 445

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           +K+G   +    N+L++MY KC        +F  M  +++ SWN  ++    +    L+ 
Sbjct: 446 VKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQN---DLLD 502

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            +R  FD M  R+  +WT +I+ Y      +EA+  F  M  +  + PN   L  +L  C
Sbjct: 503 EARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTILLGVC 561

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
            SL     G+QIH  AI+  ++ ++ + NALI MY KCG  D +RR+F D    +D  TW
Sbjct: 562 GSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIF-DLMEERDIFTW 619

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++I++GY  HG G EA+ +Y  M   G  P+ +T VG+L+AC  +GL++EG + + S+  
Sbjct: 620 NTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQ 679

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            Y + P  E  AC+VD+LGR G +  A  FI  MP+EP   IW AL+ A  +H N+E+  
Sbjct: 680 DYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGK 739

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A + L ++EP N  NYV LSN+Y+S   W  VAE+R +MK +G+ K PGCSW  I  K 
Sbjct: 740 RAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKM 799

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           H F   DK H     I   L++L  +++     P
Sbjct: 800 HSFVTGDKQHEQIEEIVATLEELYTLLKATGYVP 833



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/474 (21%), Positives = 196/474 (41%), Gaps = 100/474 (21%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++T Y    Q   ++ +F  +  +++  +  +I+GY +   H +A ++F  M+   + PD
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPD 223

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK-CGKFSECLNLF 179
               A+       + +L+V   +  L++K GF  DV++  +++++Y +        +  F
Sbjct: 224 QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFF 283

Query: 180 DEMPQRNVGSWNVRISG--HASSGDFSLVVRSRR-------------------------- 211
           + M +RN  +W+  I+   H    D ++ V  R                           
Sbjct: 284 ESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARI 343

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE----------------- 254
           +F+Q+    V +W A+I GY+QNG ++EA  LF +M  ++ I                  
Sbjct: 344 LFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEA 403

Query: 255 -------------PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
                        P+  SL S+   CS+++ L  G Q+H  A++     +   CNALI M
Sbjct: 404 LGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITM 463

Query: 302 YSKCGSLDCARRVFE------------------------------DSSFNKDAITWSSIV 331
           Y KC +++ AR+VF                               D+  ++D ++W++I+
Sbjct: 464 YGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTII 523

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           S Y    + +EA+  +  M C    P+   +  +L  CG  G    G +I+   I   ++
Sbjct: 524 SAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAI---KL 580

Query: 392 KPTTE--ICACVVDMLGRAGQLD--RALDFIKTMPVEPSPSIWGALVSASVMHG 441
              +E  +   ++ M  + G  D  R  D ++    E     W  +++    HG
Sbjct: 581 GMDSELIVANALISMYFKCGCADSRRIFDLME----ERDIFTWNTIITGYAQHG 630



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 198/414 (47%), Gaps = 37/414 (8%)

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
           G+  +++ VF+++  +D+  +NS+I+ Y  N   + A +L+  +   N+      L+   
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYG 107

Query: 129 KLSG--EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +L    E + +  GML            + +  N+++S YV+ G  +    LFD MP R+
Sbjct: 108 RLGRVLEARRVFDGMLER----------NTVAWNAMISCYVQNGDITMARRLFDAMPSRD 157

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           V SWN  ++G+  S     +V +R +F++M  RN+ +WT MI+GY +  +  +A  +F +
Sbjct: 158 VSSWNSMLTGYCHSLQ---MVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCK 214

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           M  ++ + P++ +  S L     L  L   + +   A++     DV +  A++++YS+  
Sbjct: 215 MH-REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDT 273

Query: 307 S-LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK--MVCLGSKPDIITIV 363
           S LD A + FE S   ++  TWS++++     G+   A+ +Y +  +  +  +  +IT  
Sbjct: 274 SVLDTAIKFFE-SMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALIT-- 330

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
             L+ CGR   I++   ++  +      +P       ++    + G ++ A +    MP 
Sbjct: 331 -GLAQCGR---IDDARILFEQI-----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPF 381

Query: 424 EPSPSIWGALVSASVMHGNSE-----MQDLAYKSLIQLEPENPSNYVSLSNLYA 472
             + S W  +++    +G SE     +Q+L    ++       S + + SN+ A
Sbjct: 382 RNTIS-WAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVA 434



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 139/340 (40%), Gaps = 78/340 (22%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+   Q HS  + +G   N F    LIT Y  C     ++ VF+ +  KD+  +NS + 
Sbjct: 434 ALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLA 493

Query: 95  GYVKN---------------------------HGH----NEALELFSNMYYSNVSPDDFT 123
             V+N                           + H    NEA+  F  M+  +  P+   
Sbjct: 494 ALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPI 553

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           L  +  + G +    +G  IH ++IK+G   ++I+AN+L+SMY KCG  ++   +FD M 
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLME 612

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
           +R++ +WN                                   +I GY Q+G   EA+ +
Sbjct: 613 ERDIFTWNT----------------------------------IITGYAQHGLGREAIKM 638

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC------NA 297
           +  M+    + PN+V+ V +L  CS       G    G+   K ++ D  L         
Sbjct: 639 YQHME-SAGVLPNEVTFVGLLNACS-----HAGLVDEGWKFFKSMSQDYGLTPLPEHYAC 692

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           ++D+  + G +  A +   D     D + WS+++    +H
Sbjct: 693 MVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIH 732



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 128/310 (41%), Gaps = 87/310 (28%)

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGH----------------------------AS 199
           + G+  E   +FD MP+R++ +WN  IS +                            + 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG 105

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
            G    V+ +RRVFD M  RN  AW AMI+ YVQNGD+  A  LF  M       P++  
Sbjct: 106 YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAM-------PSR-- 156

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
                                          DVS  N+++  Y     +  AR +FE   
Sbjct: 157 -------------------------------DVSSWNSMLTGYCHSLQMVDARNLFEKMP 185

Query: 320 FNKDAITWSSIVSGYGL---HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
             ++ ++W+ ++SGYG    HGK  +   ++ KM   G  PD       LSA    GL N
Sbjct: 186 -ERNLVSWTVMISGYGRIENHGKAWD---IFCKMHREGLLPDQSNFASALSAV--KGLGN 239

Query: 377 EGLEIYNSVINTYRIKPTTE----ICACVVDMLGR-AGQLDRALDFIKTMPVEPSPSIWG 431
             L++  S +    +K   E    I   ++++  R    LD A+ F ++M +E +   W 
Sbjct: 240 --LDVLES-LRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESM-IERNEYTWS 295

Query: 432 ALVSASVMHG 441
            ++ A++ HG
Sbjct: 296 TMI-AALSHG 304



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 18/173 (10%)

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           G    V  +R VFD M RR++ AW +MI+ Y  NG  D A  L+      D I    +  
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY------DAISGGNMRT 98

Query: 261 VSVLPTCSSLIG--LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
            ++L +    +G  L   +   G      L  +    NA+I  Y + G +  ARR+F D+
Sbjct: 99  GAILLSGYGRLGRVLEARRVFDGM-----LERNTVAWNAMISCYVQNGDITMARRLF-DA 152

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
             ++D  +W+S+++GY    +  +A  L+ KM     + ++++   ++S  GR
Sbjct: 153 MPSRDVSSWNSMLTGYCHSLQMVDARNLFEKM----PERNLVSWTVMISGYGR 201


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 174/482 (36%), Positives = 270/482 (56%), Gaps = 44/482 (9%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           ++  LI  Y+  G+  +++ VF+ ++ KDV  + ++I   V +    +A+E +  M    
Sbjct: 336 MNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEG 395

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           + PD+ TL ++      I  L++G+ +H ++IK G V  VI++NSL+ MY KC      L
Sbjct: 396 ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNAL 455

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
            +F     RN       ISG                      +NV +WT++I G   N  
Sbjct: 456 EVF-----RN-------ISG----------------------KNVVSWTSLILGLRINNR 481

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
             EAL+ F   Q+K+ ++PN V+L+SVL  C+ +  L  GK+IH  A+R  +  D  L N
Sbjct: 482 SFEALLFF--RQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN 539

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFN---KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           A++DMY +CG     R+V   + FN   KD   W+ +++GY   G+   AV L++KM+ L
Sbjct: 540 AILDMYVRCG-----RKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL 594

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
              PD IT + +L AC +SG++ EGLE +N + N Y + P  +  ACVVD+LGRAGQLD 
Sbjct: 595 EIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDD 654

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A DFI+ MP+ P  +IWGAL++A  +H N E+ ++A K + + + ++   Y+ L NLYA 
Sbjct: 655 AYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAG 714

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
              WD V+++R++M++RGL   PGCSW+ I GK H F   D +H  S  I  +LD     
Sbjct: 715 CGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSK 774

Query: 534 MR 535
           M+
Sbjct: 775 MK 776



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 132/481 (27%), Positives = 227/481 (47%), Gaps = 72/481 (14%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L++ +   G    +  VF  +  +DV+ +N L+ GY K    +EAL L+  M ++ + P+
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPN 197

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            +T  ++ K    + D+  G  IH   I+ GF  DV + N+L++MYVKCG  S    LFD
Sbjct: 198 VYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFD 257

Query: 181 EMPQRNVGSWNVRISGHASSGD-------FSL---------------VVRSRRVFDQMK- 217
           +MP+R+  SWN  ISG+  +G        FS+               V  +  + D  + 
Sbjct: 258 KMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERL 317

Query: 218 RRNVYAWT-------------AMINGYVQNGDLDEALVLFLEMQLKDRIE---------- 254
            R V+ +              ++I  Y   G L+EA  +F  M+ KD +           
Sbjct: 318 GRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVS 377

Query: 255 --------------------PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
                               P++++LVSVL  C+ +  L  G ++H  AI+  L   V +
Sbjct: 378 HKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIV 437

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            N+LIDMYSKC  +D A  VF + S  K+ ++W+S++ G  ++ +  EA+L + +M    
Sbjct: 438 SNSLIDMYSKCKCVDNALEVFRNIS-GKNVVSWTSLILGLRINNRSFEALLFFRQMK-ES 495

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
            KP+ +T++ VLSAC R G +  G EI+   + T  +     +   ++DM  R G+   A
Sbjct: 496 MKPNSVTLISVLSACARIGALMRGKEIHAHALRT-GVGFDGFLPNAILDMYVRCGRKVPA 554

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           L+   +   +   + W  L++     G +++    +  +++LE  +P     +S L A S
Sbjct: 555 LNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEI-HPDEITFISLLCACS 611

Query: 475 R 475
           +
Sbjct: 612 K 612



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 140/287 (48%), Gaps = 42/287 (14%)

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V L N+L+SM+V+ G      NL D        +W                     VF +
Sbjct: 132 VRLGNALLSMFVRFG------NLLD--------AW--------------------YVFGK 157

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  R+V++W  ++ GY + G  DEAL L+  M L   I PN  +  SVL TC+ +  ++ 
Sbjct: 158 MSERDVFSWNVLVGGYAKAGCFDEALNLYHRM-LWAEIRPNVYTFPSVLKTCAGVSDIAR 216

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK+IH   IR     DV + NALI MY KCG +  AR +F D    +D I+W++++SGY 
Sbjct: 217 GKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF-DKMPKRDRISWNAMISGYF 275

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE--GLEIYNSVINTYRIKP 393
            +G G E + L++ M  L   PD+IT+  V SAC    L NE  G  ++  V+ +     
Sbjct: 276 ENGGGLEGLELFSMMRELSVDPDLITMTTVASAC--ELLDNERLGRGVHGYVVKS-EFGG 332

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
              +   ++ M    G+L+ A      M  +   S W A++++ V H
Sbjct: 333 DISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVS-WTAMIASLVSH 378



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 38/317 (11%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A    L L  + H   +  G +S+  VS  LI  Y+ C     +  VF +I
Sbjct: 402 TLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNI 461

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             K+V  + SLI G   N+   EAL  F  M  S + P+  TL ++      I  L  G 
Sbjct: 462 SGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARIGALMRGK 520

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH  +++ G   D  L N+++ MYV+CG+    LN F+   +++V +WN+ ++G+A  G
Sbjct: 521 EIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQG 579

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
              L V    +FD+M                            LE++    I P++++ +
Sbjct: 580 QAKLAV---ELFDKM----------------------------LELE----IHPDEITFI 604

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           S+L  CS    ++ G +       K  L  ++     ++D+  + G LD A    +D   
Sbjct: 605 SLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPI 664

Query: 321 NKDAITWSSIVSGYGLH 337
             DA  W ++++   +H
Sbjct: 665 RPDAAIWGALLNACRIH 681



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 23/232 (9%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   K+ H+  L  G   + F+   ++  Y  CG+   +   FN
Sbjct: 500 SVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFN 559

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           S Q KDV  +N L+ GY +      A+ELF  M    + PD+ T   IS L    K    
Sbjct: 560 S-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF--ISLLCACSKS--- 613

Query: 140 GMLIHGLSI------KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNV 192
           GM+  GL        K     ++     ++ +  + G+  +  +   +MP R +   W  
Sbjct: 614 GMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGA 673

Query: 193 -----RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
                RI  +   G+    + ++RVF++   ++V  +  + N Y   G+ D+
Sbjct: 674 LLNACRIHRNVELGE----IAAKRVFEK-DNKSVGYYILLCNLYAGCGNWDK 720


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 165/497 (33%), Positives = 275/497 (55%), Gaps = 38/497 (7%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H+ I+  G  S+PFV   LI+ Y+  G    +  +F+  + KDV  + ++I+G+V+N 
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILA 159
             +EA+  F  M  + V+ ++ T+ ++ K +G+++D+  G  +HGL ++ G V  DV + 
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           +SL+ MY KC  + +                                  +++VFD+M  R
Sbjct: 244 SSLVDMYGKCSCYDD----------------------------------AQKVFDEMPSR 269

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV  WTA+I GYVQ+   D+ +++F EM LK  + PN+ +L SVL  C+ +  L  G+++
Sbjct: 270 NVVTWTALIAGYVQSRCFDKGMLVFEEM-LKSDVAPNEKTLSSVLSACAHVGALHRGRRV 328

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H + I+  +  + +    LID+Y KCG L+ A  VFE     K+  TW+++++G+  HG 
Sbjct: 329 HCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFE-RLHEKNVYTWTAMINGFAAHGY 387

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             +A  L+  M+     P+ +T + VLSAC   GL+ EG  ++ S+   + ++P  +  A
Sbjct: 388 ARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYA 447

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VD+ GR G L+ A   I+ MP+EP+  +WGAL  + ++H + E+   A   +I+L+P 
Sbjct: 448 CMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPS 507

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           +   Y  L+NLY+ S+ WD VA +R  MKD+ + KSPG SWI + GK   F   D   P 
Sbjct: 508 HSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPL 567

Query: 520 -SVSIYEMLDDLILIMR 535
            S  +Y+ LD + + MR
Sbjct: 568 ESDDLYKTLDTVGVQMR 584



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 107/265 (40%), Gaps = 8/265 (3%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
            V A HR     ++ H  ++      N    T LI  Y  CG   ++ LVF  +  K+VY
Sbjct: 318 HVGALHRG----RRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVY 373

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            + ++ING+  +    +A +LF  M  S+VSP++ T   +         +  G  +  LS
Sbjct: 374 TWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLF-LS 432

Query: 148 IKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMPQRNVG-SWNVRISGHASSGDFS 204
           +K  F ++    +   ++ ++ + G   E   L + MP       W           D+ 
Sbjct: 433 MKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYE 492

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           L   +     +++  +   +T + N Y ++ + DE   +  +M+ +  ++    S + V 
Sbjct: 493 LGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELN 289
                 I     K +    + K L+
Sbjct: 553 GKLCEFIAFDDKKPLESDDLYKTLD 577


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 176/500 (35%), Positives = 281/500 (56%), Gaps = 13/500 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD--VYLYNSLINGYV 97
           +Q H+Q+++    SN  ++  LI  Y        ++++F+        + L+N +I  Y 
Sbjct: 91  QQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYS 150

Query: 98  KNHGHNEALELFSNMYYSN----VSPDDFTLA-TISKLSGEIKDLNVGMLIHGLSIKIGF 152
           K     E + LF  M   +    V PD++T    I+  S +I  L  G ++HG+ +K GF
Sbjct: 151 KIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQI-SLIYGEIVHGMVVKSGF 209

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             ++ + NS+++M     +  +   +F++M +R+V SW   + G+A  G+     R+  +
Sbjct: 210 ESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMD---RACEL 266

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
           F+ M  RN  +W  MI+G++  G   EAL  F  M   DR+ PN+  LV VL  C+ L  
Sbjct: 267 FNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGA 326

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  G  IH +  +  +    ++  ALIDMY+KCG +DCA RVF +    +D ++++S++S
Sbjct: 327 LDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVF-NGICKRDVLSFTSMIS 385

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           G   HG G +A+ ++ +M+     P+ ITI+GVL+ C  SGL+ EG  I  ++ + + I 
Sbjct: 386 GLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIA 445

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           P  E   C +D+LGRAG L+RAL+ +KTMP+EP   IW AL+SAS +H N  + +     
Sbjct: 446 PKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISH 505

Query: 453 LIQLE-PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
           + QL+  ++    V LSNLYAS  RW+ V E+R +M DR  + SPGCSWI ++G  H F 
Sbjct: 506 IGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFR 565

Query: 512 VADKAHPCSVSIYEMLDDLI 531
           VAD+ HP  V I   L++++
Sbjct: 566 VADQLHPQIVEIRNKLNEIL 585


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 176/514 (34%), Positives = 264/514 (51%), Gaps = 37/514 (7%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-- 116
           T LIT  A CG+   ++++F  I    V  +N+LI GY++N   NEA ELF  M + N  
Sbjct: 326 TALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTI 385

Query: 117 -----------------------------VSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
                                        + P   +L +I      I  L  G  +H L+
Sbjct: 386 SWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLA 445

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           +K+G   +    N+L++MY KC        +F  M  +++ SWN  ++    +    L+ 
Sbjct: 446 VKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQN---DLLD 502

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            +R  FD M  R+  +WT +I+ Y      +EA+  F  M  +  + PN   L  +L  C
Sbjct: 503 EARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTILLGVC 561

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
            SL     G+QIH  AI+  ++ ++ + NALI MY KCG  D +RR+F D    +D  TW
Sbjct: 562 GSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIF-DLMEERDIFTW 619

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++I++GY  HG G EA+ +Y  M   G  P+ +T VG+L+AC  +GL++EG + + S+  
Sbjct: 620 NTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQ 679

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            Y + P  E  AC+VD+LGR G +  A  FI  MP+EP   IW AL+ A  +H N+E+  
Sbjct: 680 DYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGK 739

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A + L ++EP N  NYV LSN+Y+S   W  VAE+R +MK +G+ K PGCSW  I  K 
Sbjct: 740 RAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKM 799

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           H F   DK H     I   L++L  +++     P
Sbjct: 800 HSFVTGDKQHEQIEEIVATLEELYTLLKATGYVP 833



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/474 (21%), Positives = 196/474 (41%), Gaps = 100/474 (21%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++T Y    Q   ++ +F  +  +++  +  +I+GY +   H +A ++F  M+   + PD
Sbjct: 164 MLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPD 223

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK-CGKFSECLNLF 179
               A+       + +L+V   +  L++K GF  DV++  +++++Y +        +  F
Sbjct: 224 QSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFF 283

Query: 180 DEMPQRNVGSWNVRISG--HASSGDFSLVVRSRR-------------------------- 211
           + M +RN  +W+  I+   H    D ++ V  R                           
Sbjct: 284 ESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARI 343

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE----------------- 254
           +F+Q+    V +W A+I GY+QNG ++EA  LF +M  ++ I                  
Sbjct: 344 LFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEA 403

Query: 255 -------------PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
                        P+  SL S+   CS+++ L  G Q+H  A++     +   CNALI M
Sbjct: 404 LGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITM 463

Query: 302 YSKCGSLDCARRVFE------------------------------DSSFNKDAITWSSIV 331
           Y KC +++ AR+VF                               D+  ++D ++W++I+
Sbjct: 464 YGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTII 523

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           S Y    + +EA+  +  M C    P+   +  +L  CG  G    G +I+   I   ++
Sbjct: 524 SAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAI---KL 580

Query: 392 KPTTE--ICACVVDMLGRAGQLD--RALDFIKTMPVEPSPSIWGALVSASVMHG 441
              +E  +   ++ M  + G  D  R  D ++    E     W  +++    HG
Sbjct: 581 GMDSELIVANALISMYFKCGCADSRRIFDLME----ERDIFTWNTIITGYAQHG 630



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 198/414 (47%), Gaps = 37/414 (8%)

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
           G+  +++ VF+++  +D+  +NS+I+ Y  N   + A +L+  +   N+      L+   
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYG 107

Query: 129 KLSG--EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +L    E + +  GML            + +  N+++S YV+ G  +    LFD MP R+
Sbjct: 108 RLGRVLEARRVFDGMLER----------NTVAWNAMISCYVQNGDITMARRLFDAMPSRD 157

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           V SWN  ++G+  S     +V +R +F++M  RN+ +WT MI+GY +  +  +A  +F +
Sbjct: 158 VSSWNSMLTGYCHSLQ---MVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCK 214

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
           M  ++ + P++ +  S L     L  L   + +   A++     DV +  A++++YS+  
Sbjct: 215 MH-REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDT 273

Query: 307 S-LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK--MVCLGSKPDIITIV 363
           S LD A + FE S   ++  TWS++++     G+   A+ +Y +  +  +  +  +IT  
Sbjct: 274 SVLDTAIKFFE-SMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALIT-- 330

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
             L+ CGR   I++   ++  +      +P       ++    + G ++ A +    MP 
Sbjct: 331 -GLAQCGR---IDDARILFEQI-----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPF 381

Query: 424 EPSPSIWGALVSASVMHGNSE-----MQDLAYKSLIQLEPENPSNYVSLSNLYA 472
             + S W  +++    +G SE     +Q+L    ++       S + + SN+ A
Sbjct: 382 RNTIS-WAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVA 434



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 139/340 (40%), Gaps = 78/340 (22%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+   Q HS  + +G   N F    LIT Y  C     ++ VF+ +  KD+  +NS + 
Sbjct: 434 ALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLA 493

Query: 95  GYVKN---------------------------HGH----NEALELFSNMYYSNVSPDDFT 123
             V+N                           + H    NEA+  F  M+  +  P+   
Sbjct: 494 ALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPI 553

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           L  +  + G +    +G  IH ++IK+G   ++I+AN+L+SMY KCG  ++   +FD M 
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLME 612

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
           +R++ +WN                                   +I GY Q+G   EA+ +
Sbjct: 613 ERDIFTWNT----------------------------------IITGYAQHGLGREAIKM 638

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC------NA 297
           +  M+    + PN+V+ V +L  CS       G    G+   K ++ D  L         
Sbjct: 639 YQHME-SAGVLPNEVTFVGLLNACS-----HAGLVDEGWKFFKSMSQDYGLTPLPEHYAC 692

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           ++D+  + G +  A +   D     D + WS+++    +H
Sbjct: 693 MVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIH 732



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 128/310 (41%), Gaps = 87/310 (28%)

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGH----------------------------AS 199
           + G+  E   +FD MP+R++ +WN  IS +                            + 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSG 105

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
            G    V+ +RRVFD M  RN  AW AMI+ YVQNGD+  A  LF  M       P++  
Sbjct: 106 YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAM-------PSR-- 156

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
                                          DVS  N+++  Y     +  AR +FE   
Sbjct: 157 -------------------------------DVSSWNSMLTGYCHSLQMVDARNLFEKMP 185

Query: 320 FNKDAITWSSIVSGYGL---HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
             ++ ++W+ ++SGYG    HGK  +   ++ KM   G  PD       LSA    GL N
Sbjct: 186 -ERNLVSWTVMISGYGRIENHGKAWD---IFCKMHREGLLPDQSNFASALSAV--KGLGN 239

Query: 377 EGLEIYNSVINTYRIKPTTE----ICACVVDMLGR-AGQLDRALDFIKTMPVEPSPSIWG 431
             L++  S +    +K   E    I   ++++  R    LD A+ F ++M +E +   W 
Sbjct: 240 --LDVLES-LRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESM-IERNEYTWS 295

Query: 432 ALVSASVMHG 441
            ++ A++ HG
Sbjct: 296 TMI-AALSHG 304



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 18/173 (10%)

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           G    V  +R VFD M RR++ AW +MI+ Y  NG  D A  L+      D I    +  
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY------DAISGGNMRT 98

Query: 261 VSVLPTCSSLIG--LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
            ++L +    +G  L   +   G      L  +    NA+I  Y + G +  ARR+F D+
Sbjct: 99  GAILLSGYGRLGRVLEARRVFDGM-----LERNTVAWNAMISCYVQNGDITMARRLF-DA 152

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
             ++D  +W+S+++GY    +  +A  L+ KM     + ++++   ++S  GR
Sbjct: 153 MPSRDVSSWNSMLTGYCHSLQMVDARNLFEKM----PERNLVSWTVMISGYGR 201


>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
          Length = 655

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 279/483 (57%), Gaps = 5/483 (1%)

Query: 42  SHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101
           +H+  +  G + + FV T L  AYA CG    ++ VF+ +  +DV  +  +++ Y +   
Sbjct: 172 THALAVRTGALDDGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRN 231

Query: 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
           + EAL LF+ M  S V PD   LAT+    G I+ L +G  IH   +    ++   ++++
Sbjct: 232 YKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSA 291

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+S+Y  C        L++EMP++++ S    +SG+A +    +   +R +FD M  ++V
Sbjct: 292 LISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEI---ARSIFDGMPEKDV 348

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            +W+AMI+GYV +   +EAL LF  MQ +  I  ++++++SV+  C++L  L   K IH 
Sbjct: 349 VSWSAMISGYVDSNQPNEALSLFNGMQ-ECGIRSDEITMLSVISACANLGSLDKAKWIHA 407

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           F     LN  + +CNALIDM++KCG ++ A  VF +    K+ ITW+S++S + +HG G 
Sbjct: 408 FIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPL-KNVITWTSMISAFAMHGDGK 466

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
            ++ L+ +M   G++P+ +T + +L AC  +GL++EG  +++S++  Y I+P  E   C+
Sbjct: 467 SSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCM 526

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           VD+LGRA  +  A+  I++M +EP+  IWG+L++A  MHG+ ++   A K ++QL+P + 
Sbjct: 527 VDLLGRAKLMQEAVSLIESMHLEPNVPIWGSLLAACWMHGDLKLGAFAAKKILQLDPNHD 586

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
              V L  +Y  S   +   E+R +MK   + K  G SW+ ++   H F+   + HP S 
Sbjct: 587 GASVLLLKIYMKSDNLNNAQEVRGVMKLHRVSKETGLSWMELNEPFHEFAAGGEKHPESG 646

Query: 522 SIY 524
            I+
Sbjct: 647 KIF 649



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 164/396 (41%), Gaps = 73/396 (18%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ-----------PTQ--------- 73
           R L++ K  HS +L    I    +S+ LI+ YA C             P +         
Sbjct: 265 RHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMV 324

Query: 74  -----------SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
                      ++ +F+ +  KDV  ++++I+GYV ++  NEAL LF+ M    +  D+ 
Sbjct: 325 SGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEI 384

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T+ ++      +  L+    IH      G    + + N+L+ M+ KCG  +  LN+F+EM
Sbjct: 385 TMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEM 444

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P +NV +W   IS  A  GD      S R+F+QMK                    DE   
Sbjct: 445 PLKNVITWTSMISAFAMHGDGK---SSLRLFEQMK--------------------DEG-- 479

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK---ELNHDVSLCNALI 299
                      EPN+V+ +S+L  C     +  G+ +    +++   E  H+   C  ++
Sbjct: 480 ----------AEPNEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGC--MV 527

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           D+  +   +  A  + E      +   W S+++   +HG          K++ L    D 
Sbjct: 528 DLLGRAKLMQEAVSLIESMHLEPNVPIWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDG 587

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            +++ +L    +S  +N   E+   V+  +R+   T
Sbjct: 588 ASVL-LLKIYMKSDNLNNAQEV-RGVMKLHRVSKET 621


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 176/523 (33%), Positives = 293/523 (56%), Gaps = 19/523 (3%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           A  QHF  +  T  ++K  KQ H+QI+  G     F+  KL++ Y   G    +  VF  
Sbjct: 16  ALQQHFFSLLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFER 75

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           I++    ++N +I G+ ++   ++ +EL++ M  +   P++FT + +       + L  G
Sbjct: 76  IENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREG 135

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS---ECLNLFDEMPQRNVGSWNVRISGH 197
             +HG  +  G+  +V +  SL+++Y   G +    +   +FDE+  RN+ SWN  ++G+
Sbjct: 136 EQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGY 195

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
              GD   V  +RR+FD+M  RNV +WT MI G  Q G   +AL LF EM+ +  ++ ++
Sbjct: 196 VRCGD---VDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMR-RAGVKLDQ 251

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD-----VSLCNALIDMYSKCGSLDCAR 312
           V+LV+ L  C+ L  L  G  IH + I + L+       VSL N+LI MY+ CG +D A 
Sbjct: 252 VALVAALSACAELGDLKLGTWIHSY-IDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAY 310

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS---KPDIITIVGVLSAC 369
           +VF      +  I+W+S+++G+   G   EA+ ++  M  LG+   +PD IT +GVL AC
Sbjct: 311 KVFIGMQ-QRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCAC 369

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
             +G +++G   +  +   + I P  E   C+VD+L RAG LD A   I++MP++P+ ++
Sbjct: 370 SHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAV 429

Query: 430 WGALVSASVMHGNSEMQD-LAYKSLIQLEPENPSNY-VSLSNLYASSRRWDAVAELRTMM 487
           WGAL+    +H N+E+   +A K  ++L+P+  + Y V LSN+YA+++RW  VA +R  M
Sbjct: 430 WGALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKM 489

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            + G++K  G SW+ I+G  H F   D  H  + S+YEML  +
Sbjct: 490 VEIGVRKPAGRSWVQINGVVHDFVAGDWTHKHASSVYEMLSKI 532


>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 149/459 (32%), Positives = 265/459 (57%), Gaps = 5/459 (1%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F+ +   DV    +LI  + + H + EA+ LFS M   N+ P++FT AT+   S  +K+
Sbjct: 55  LFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLKN 114

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           + +G  +H  ++K+G    V + ++++  Y K   F E  N F+++ + NV S+   I G
Sbjct: 115 IYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHG 174

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +   G    +  + ++F +M  RNV +W AM+ G+ Q G  +EA+ LF+EM L++   PN
Sbjct: 175 YLKKGK---IDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEM-LREGFMPN 230

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + +    + + +++  L  GK  H  A++     DV +CN+L+  Y+KCGS++ +  VF 
Sbjct: 231 QSTFPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFN 290

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           +   +++ ++W++++ G+  +G+G +AV+ + +M   G +P+ +T++G+L AC  +GL+ 
Sbjct: 291 ELP-DRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLLGLLCACNHAGLVE 349

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +G   +N +          E  AC+VD+L R G+L  A  F+  +P +P    W AL+  
Sbjct: 350 KGYMYFNQMRQEEPGILKPEHYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGG 409

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N+E+ DLA + ++ L+PE+ S+YV LSN Y+++ RW  V+ +R  MK++GLK+ P
Sbjct: 410 CHIHSNAELSDLAAQKILALDPEDVSSYVMLSNAYSAAGRWQQVSTIRREMKEKGLKRIP 469

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           GCSWI +  K H F  +DK H     IY  L   +  +R
Sbjct: 470 GCSWIEVRSKIHVFLNSDKNHHQKEEIYSFLKFCVEQLR 508



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 163/396 (41%), Gaps = 78/396 (19%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           +    +T ATV H    S   +++ L KQ H++ + +G  +  FV + ++  YA      
Sbjct: 95  IKPNEFTFATVIH---SSTGLKNIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFE 151

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV--------------- 117
           +++  F  IQ  +V  Y +LI+GY+K    ++AL+LF  M   NV               
Sbjct: 152 EARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGH 211

Query: 118 ----------------SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
                            P+  T       +  +  L +G   H  ++K     DV + NS
Sbjct: 212 NEEAVSLFIEMLREGFMPNQSTFPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNS 271

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+S Y KCG   + L +F+E+P RN  SWN                              
Sbjct: 272 LVSFYAKCGSMEDSLLVFNELPDRNTVSWN------------------------------ 301

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
               A+I G+ QNG  ++A++ F  M+    + PN V+L+ +L  C+   GL     ++ 
Sbjct: 302 ----AVICGFAQNGRGEDAVIFFERMRAAG-LRPNSVTLLGLLCACNH-AGLVEKGYMYF 355

Query: 282 FAIRKE----LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
             +R+E    L  +   C  ++D+ S+ G L  A +   D  F+     W +++ G  +H
Sbjct: 356 NQMRQEEPGILKPEHYAC--MVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGGCHIH 413

Query: 338 GKGHEAVLLYNKMVCLGSK--PDIITIVGVLSACGR 371
                + L   K++ L  +     + +    SA GR
Sbjct: 414 SNAELSDLAAQKILALDPEDVSSYVMLSNAYSAAGR 449


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 160/483 (33%), Positives = 275/483 (56%), Gaps = 32/483 (6%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+Q++  GH  +PF+  +L+ + + C     +  +F    + +VYLY +LI+G+V +  +
Sbjct: 52  HAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNY 111

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            +A++L+S M + ++ PD++ +A+I K  G    L  G  +H  ++K+G   + ++   +
Sbjct: 112 FDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRI 171

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           M +Y KCG+  +   +F+EMP+  V                               ++  
Sbjct: 172 MELYGKCGELGDARRVFEEMPEDVVA------------------------------KDTV 201

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            WTAMI+G+V+N +++ AL  F  MQ  + + PN+ ++V VL  CS L  L  G+ +H +
Sbjct: 202 CWTAMIDGFVRNEEMNRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGRWVHSY 260

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
             + E+  ++ + NALI+MYS+CGS+D A+ VF D   ++D IT+++++SG  ++GK  +
Sbjct: 261 MRKFEIELNLFVGNALINMYSRCGSIDEAQTVF-DEMKDRDVITYNTMISGLSMNGKSRQ 319

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ L+  M+    +P  +T VGVL+AC   GL++ G +I++S+   Y ++P  E   C+V
Sbjct: 320 AIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMV 379

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGR G+L+ A D I+TM + P   + G L+SA  MH N E+ +   K L      +  
Sbjct: 380 DLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSG 439

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            YV LS++YASS +W   A++R  MK+ G++K PGCS I ++ + H F + D  HP    
Sbjct: 440 TYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKER 499

Query: 523 IYE 525
           IYE
Sbjct: 500 IYE 502



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 144/331 (43%), Gaps = 53/331 (16%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           NY  A++   L+   +  +L+  ++ HS+ L LG  SN  V  +++  Y  CG+   ++ 
Sbjct: 130 NYLMASI---LKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARR 186

Query: 77  VFNSIQH----KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
           VF  +      KD   + ++I+G+V+N   N ALE F  M   NV P++FT+  +     
Sbjct: 187 VFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACS 246

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
           ++  L +G  +H    K    +++ + N+L++MY +CG   E   +FDEM  R+V ++N 
Sbjct: 247 QLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNT 306

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                                             MI+G   NG   +A+ LF  M +  R
Sbjct: 307 ----------------------------------MISGLSMNGKSRQAIELFRVM-IGRR 331

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD------VSLCNALIDMYSKCG 306
           + P  V+ V VL  CS      GG    GF I   +  D      +     ++D+  + G
Sbjct: 332 LRPTNVTFVGVLNACS-----HGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVG 386

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            L+ A  +        D I   +++S   +H
Sbjct: 387 RLEEAYDLIRTMKMTPDHIMLGTLLSACKMH 417



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 96/202 (47%), Gaps = 10/202 (4%)

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           IH   IR   + D  +   L+   SKC ++D A R+F+  + N +   +++++ G+   G
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQ-YTHNPNVYLYTALIDGFVSSG 109

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              +A+ LY++M+     PD   +  +L ACG    + EG E+++  +    +     + 
Sbjct: 110 NYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKL-GLSSNRLVR 168

Query: 399 ACVVDMLGRAGQLDRALDFIKTMP---VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
             ++++ G+ G+L  A    + MP   V      W A++   V   N EM + A ++   
Sbjct: 169 LRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVR--NEEM-NRALEAFRG 225

Query: 456 LEPEN--PSNYVSLSNLYASSR 475
           ++ EN  P+ +  +  L A S+
Sbjct: 226 MQGENVRPNEFTIVCVLSACSQ 247


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 180/559 (32%), Positives = 288/559 (51%), Gaps = 73/559 (13%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLG-----HISNPFVS---------------- 58
           S +    L+  A  ++ +  +Q H+Q+L LG     ++    +S                
Sbjct: 64  SYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFD 123

Query: 59  ----------TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALEL 108
                     T LIT YA  G    ++ VF+ I  +DV  +N++I GYV+N  + EALEL
Sbjct: 124 ASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALEL 183

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI----GFVVDVILANSLMS 164
           F  M  +NV PD+ TL ++     +   + +G  +H          GF   + + N+L+ 
Sbjct: 184 FKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALID 243

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           +Y KCG       LF+ +  ++V SWN                                 
Sbjct: 244 LYSKCGDVETAFGLFEGLSCKDVVSWNT-------------------------------- 271

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
             +I GY       EAL+LF EM L+    PN V+L+SVLP C+ L  +  G+ IH +  
Sbjct: 272 --LIGGYTHTNLYKEALLLFQEM-LRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYID 328

Query: 285 R--KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
           +  K + ++ SL  +LIDMY+KCG ++ A +VF +S   +   +W++++ G+ +HG+ + 
Sbjct: 329 KKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVF-NSMLYRSLSSWNAMIFGFAMHGRANA 387

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A  L+++M     +PD IT VG+LSAC  SGL++ G +I+ S+   Y + P  E   C++
Sbjct: 388 AFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMI 447

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LG +G    A + I TMP+EP   IW +L+ A   HGN E+ +   + LI++EPEN  
Sbjct: 448 DLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSG 507

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
           +YV LSN+YA++ RW+ VA +R ++  +G+KK PGCS I +    H F + DK HP    
Sbjct: 508 SYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRRE 567

Query: 523 IYEMLDDLILIMRGAAASP 541
           IY ML+++ + +  A  +P
Sbjct: 568 IYHMLEEMDVQLEEAGFAP 586



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 203/372 (54%), Gaps = 11/372 (2%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF +IQ  ++ ++N+++ G+  +     ALE++  M      P+ ++   + K   + K 
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKA 79

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
              G  IH   +K+G  +D  +  SL+SMY + G   +   +FD    R+V S    I+G
Sbjct: 80  FEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITG 139

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +AS GDF     +R+VFD++  R+V +W AMI GYV+NG  +EAL LF EM ++  + P+
Sbjct: 140 YASRGDFR---SARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEM-MRTNVRPD 195

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS----LCNALIDMYSKCGSLDCAR 312
           + +LVSV+  C+    +  G+Q+H +    + +H  S    + NALID+YSKCG ++ A 
Sbjct: 196 EGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAF 255

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
            +FE  S  KD ++W++++ GY       EA+LL+ +M+  G  P+ +T++ VL AC   
Sbjct: 256 GLFEGLSC-KDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHL 314

Query: 373 GLINEGLEIYNSVINTYR-IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           G I+ G  I+  +    + +   T +   ++DM  + G ++ A     +M +  S S W 
Sbjct: 315 GAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSM-LYRSLSSWN 373

Query: 432 ALVSASVMHGNS 443
           A++    MHG +
Sbjct: 374 AMIFGFAMHGRA 385



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 146/303 (48%), Gaps = 12/303 (3%)

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGD-FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
           +++F+ + + N+  WN  + GHASS D  S +    R+       N Y++  ++    ++
Sbjct: 18  ISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKS 77

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
              +E   +  ++ LK     ++    S++   +   GL   +++   +  +    DV  
Sbjct: 78  KAFEEGRQIHAQV-LKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHR----DVVS 132

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
           C ALI  Y+  G    AR+VF++ +  +D ++W+++++GY  +G+  EA+ L+ +M+   
Sbjct: 133 CTALITGYASRGDFRSARKVFDEIT-ERDVVSWNAMITGYVENGRYEEALELFKEMMRTN 191

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSV---INTYRIKPTTEICACVVDMLGRAGQL 411
            +PD  T+V V+SAC +SG I  G ++++ V    + +    + +I   ++D+  + G +
Sbjct: 192 VRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDV 251

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
           + A    + +  +   S W  L+     H N   + L     +    E P++   LS L 
Sbjct: 252 ETAFGLFEGLSCKDVVS-WNTLIGGYT-HTNLYKEALLLFQEMLRSGECPNDVTLLSVLP 309

Query: 472 ASS 474
           A +
Sbjct: 310 ACA 312


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 190/603 (31%), Positives = 303/603 (50%), Gaps = 78/603 (12%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           Y   T    LQ  A + +L   K+ H+ +L      +P   T LI  Y+ C     S  V
Sbjct: 27  YDLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRV 86

Query: 78  FNSIQH--KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
           FN   H  K+V+ YN+LI G++ N     AL L++ M +  ++PD FT   + +  G+  
Sbjct: 87  FNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDD 146

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK--------------------------- 168
           D  V   IHGL  K+G  +DV + ++L++ Y+K                           
Sbjct: 147 DGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVN 206

Query: 169 ----CGKFSECLNLFDEMPQRNVGSWNVRISGHAS----SGDF----------------S 204
                G+F E L +F  M    V      ++G  S     GDF                S
Sbjct: 207 GFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYES 266

Query: 205 LVVRSR----------------RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
            VV S                  VF+ M   ++++W ++++ + + GD    L LF  M 
Sbjct: 267 GVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMM 326

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF----AIRKELNHDVS----LCNALID 300
              R++P+ V++ +VLP C+ L  L  G++IHG+     + KE +HDV     L NAL+D
Sbjct: 327 GSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMD 386

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY+KCG++  AR VF +    KD  +W+ +++GYG+HG G EA+ ++++M      P+ I
Sbjct: 387 MYAKCGNMRDARMVFVNMR-EKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEI 445

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           + VG+LSAC  +G++ EGL   + + + Y + P+ E   CV+DML RAGQL  A D + T
Sbjct: 446 SFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLT 505

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP +  P  W +L++A  +H ++++ ++A   +I+LEP++  NYV +SN+Y    R++ V
Sbjct: 506 MPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVGRYEEV 565

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540
            E R  MK + +KK PGCSWI +    H F   D+ HP +  IY  L+ L  +++     
Sbjct: 566 LEWRYTMKQQNVKKRPGCSWIELVNGVHVFITGDRTHPQTEYIYAGLNSLTAVLQEHGYV 625

Query: 541 PHL 543
           P +
Sbjct: 626 PFI 628


>gi|297810955|ref|XP_002873361.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319198|gb|EFH49620.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 849

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 167/521 (32%), Positives = 295/521 (56%), Gaps = 11/521 (2%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVF 78
           S T+   L V A    L   K+ HS IL   ++  +  V   LI+ YA  G  + +   F
Sbjct: 330 SVTILSILPVCAQLTDLTCGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAF 389

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  KD+  +N++++ +  +    + L L  +++   ++ D  T+ ++ K    ++ + 
Sbjct: 390 SLMSMKDIISWNAILDAFADSPKQFQFLNLLHHLFNEAITLDSVTILSLLKFCTNVQGIG 449

Query: 139 VGMLIHGLSIKIGFV---VDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRI 194
               +HG S+K G +    +  L N+L+  Y KCG       +F  + +R  + ++N  +
Sbjct: 450 KVKEVHGYSVKAGLLHNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLL 509

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           SG+ +SG       ++ +F +M   ++  W+ M+  Y ++   +EA+ +F E+Q +  + 
Sbjct: 510 SGYVNSGSHD---DAQMLFSEMSTTDLTTWSLMVRIYAESCFPNEAIGVFREIQARG-MR 565

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           PN V+++++LP C+ L  L   +Q HG+ IR  L  D+ L   L+D+Y+KCGSL  A  V
Sbjct: 566 PNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGRLG-DIRLKGTLLDVYAKCGSLKHAYSV 624

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F+ S   +D + ++++V+GY +HG+G EA+++++ M+    KPD + I  +L+AC  +GL
Sbjct: 625 FQ-SDARRDLVMFTAMVAGYAVHGRGKEALMIFSHMIDSNIKPDHVFITTLLTACCHAGL 683

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           I +GL+IY+S+   + +KPT E  AC VD+L R G+LD A  FI  MPVEP+ +IWG L+
Sbjct: 684 IQDGLQIYDSIRAVHGMKPTMEQYACAVDLLARGGRLDDAYSFITQMPVEPNANIWGTLL 743

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
            A   +   ++       L+Q E ++  N+V +SN+YA+  +W+ V ELR +MK + +KK
Sbjct: 744 RACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKK 803

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
             GCSW+ + GK   F   D +HP   SI+++++ L L M+
Sbjct: 804 PAGCSWLEVDGKRDVFVSGDCSHPRRDSIFDLVNALYLQMK 844



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 183/401 (45%), Gaps = 45/401 (11%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H  +  LGHI+   VS  ++  YA C +    Q +F  +   D  ++N ++ G   + G 
Sbjct: 44  HGCVFKLGHIACTEVSKSVLNMYAKCRRMDDCQKMFRQMDSVDPVVWNIVLTGLSVSCG- 102

Query: 103 NEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
            E +  F  M++++   P   T A +  +   + D   G  +H   IK G   D ++ N+
Sbjct: 103 RETMRFFKAMHFADEPKPSSVTFAILLPVCVRLGDSYNGKSMHSYIIKTGLEKDTLVGNA 162

Query: 162 LMSMYVKCGK-FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
           L+SMY K G    +    FD++  ++V SWN                             
Sbjct: 163 LVSMYAKFGYIIPDAFTAFDDIADKDVVSWN----------------------------- 193

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL---IGLSGGK 277
                A+I G+ +N  + +A   F  M LK+  EPN  ++ +VLP C+S+   I    G+
Sbjct: 194 -----AIIAGFSENKMMADAFRSFCLM-LKEPTEPNYATIANVLPVCASMGKNIAYRSGR 247

Query: 278 QIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           QIH + +++  L   V +CN+L+  Y + G ++ A  +F     +KD ++W+ +++GY  
Sbjct: 248 QIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMG-SKDLVSWNVVIAGYAS 306

Query: 337 HGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           + +  +A+ L++ +V  G    D +TI+ +L  C +   +  G EI++ ++    +   T
Sbjct: 307 NHEWLKALQLFHNLVQKGDVSLDSVTILSILPVCAQLTDLTCGKEIHSYILRHSYLLEDT 366

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            +   ++    R G    A      M ++   S W A++ A
Sbjct: 367 SVGNALISFYARFGDTSAAYWAFSLMSMKDIIS-WNAILDA 406



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 198/448 (44%), Gaps = 84/448 (18%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV-FNSIQHKDVYLYNSLINGYVK 98
           K  HS I+  G   +  V   L++ YA  G         F+ I  KDV  +N++I G+ +
Sbjct: 142 KSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVSWNAIIAGFSE 201

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLS---GEIKDLNVGMLIHGLSIKIGFV-V 154
           N    +A   F  M      P+  T+A +  +    G+      G  IH   ++  ++  
Sbjct: 202 NKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMGKNIAYRSGRQIHSYVVQRSWLQT 261

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS-------------- 200
            V + NSL+S Y++ G+  E  +LF  M  +++ SWNV I+G+AS+              
Sbjct: 262 HVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNHEWLKALQLFHNLV 321

Query: 201 --GDFSL--------VVRSRRVFDQMKRRNVYAW--------------TAMINGYVQNGD 236
             GD SL        +    ++ D    + ++++               A+I+ Y + GD
Sbjct: 322 QKGDVSLDSVTILSILPVCAQLTDLTCGKEIHSYILRHSYLLEDTSVGNALISFYARFGD 381

Query: 237 LDEALVLFLEMQLKDRIEPN------------------------------KVSLVSVLPT 266
              A   F  M +KD I  N                               V+++S+L  
Sbjct: 382 TSAAYWAFSLMSMKDIISWNAILDAFADSPKQFQFLNLLHHLFNEAITLDSVTILSLLKF 441

Query: 267 CSSLIGLSGGKQIHGFAIRKELNH---DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           C+++ G+   K++HG++++  L H   +  L NAL+D Y+KCG+++ A ++F+  S  + 
Sbjct: 442 CTNVQGIGKVKEVHGYSVKAGLLHNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLSERRT 501

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            +T++S++SGY   G   +A +L+++M    S  D+ T   ++     S   NE + ++ 
Sbjct: 502 LVTYNSLLSGYVNSGSHDDAQMLFSEM----STTDLTTWSLMVRIYAESCFPNEAIGVFR 557

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQL 411
             I    ++P T     ++++L    QL
Sbjct: 558 E-IQARGMRPNT---VTIMNLLPVCAQL 581



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 133/311 (42%), Gaps = 40/311 (12%)

Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
           S    D      + K    + +L  G  +HG   K+G +    ++ S+++MY KC +  +
Sbjct: 15  SGFGTDHRVFLDVVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAKCRRMDD 74

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
           C  +F +M   +   WN+ ++G        L V   R                       
Sbjct: 75  CQKMFRQMDSVDPVVWNIVLTG--------LSVSCGR----------------------- 103

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
               E +  F  M   D  +P+ V+   +LP C  L     GK +H + I+  L  D  +
Sbjct: 104 ----ETMRFFKAMHFADEPKPSSVTFAILLPVCVRLGDSYNGKSMHSYIIKTGLEKDTLV 159

Query: 295 CNALIDMYSKCGS-LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
            NAL+ MY+K G  +  A   F+D + +KD ++W++I++G+  +    +A   +  M+  
Sbjct: 160 GNALVSMYAKFGYIIPDAFTAFDDIA-DKDVVSWNAIIAGFSENKMMADAFRSFCLMLKE 218

Query: 354 GSKPDIITIVGVLSAC---GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
            ++P+  TI  VL  C   G++     G +I++ V+    ++    +C  +V    R G+
Sbjct: 219 PTEPNYATIANVLPVCASMGKNIAYRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGR 278

Query: 411 LDRALDFIKTM 421
           ++ A      M
Sbjct: 279 IEEAASLFTRM 289



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 18/218 (8%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            + V+  C+S+  L+ G+ +HG   +        +  ++++MY+KC  +D  +++F    
Sbjct: 24  FLDVVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAKCRRMDDCQKMFRQMD 83

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLINEG 378
            + D + W+ +++G  +   G E +  +  M      KP  +T   +L  C R G    G
Sbjct: 84  -SVDPVVWNIVLTGLSV-SCGRETMRFFKAMHFADEPKPSSVTFAILLPVCVRLGDSYNG 141

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQL----DRALDFIKTMPVEPSPSIWGALV 434
             +++ +I T  ++  T +   +V M  + G +      A D I    V      W A++
Sbjct: 142 KSMHSYIIKT-GLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVS----WNAII 196

Query: 435 SASVMHGNSEMQDLAYKS--LIQLEPENPSNYVSLSNL 470
           +      N  M D A++S  L+  EP  P NY +++N+
Sbjct: 197 AG--FSENKMMAD-AFRSFCLMLKEPTEP-NYATIANV 230


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 169/497 (34%), Positives = 262/497 (52%), Gaps = 37/497 (7%)

Query: 40   KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
            K  H+ +L L    N  V   LIT Y  C     ++ VF S+   D+  YN LI GY   
Sbjct: 669  KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVL 728

Query: 100  HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL-NVGMLIHGLSIKIGFVVDVIL 158
                +A+++FS M  + + P+  T+  I        DL N G  +H   I+ GF+ D  +
Sbjct: 729  EDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYV 788

Query: 159  ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            ANSL++MY KCG      N                                  +F+ +  
Sbjct: 789  ANSLITMYAKCGNLESSTN----------------------------------IFNSITN 814

Query: 219  RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
            +N+ +W A+I   VQ G  +EAL LF++MQ     + ++V L   L +C+SL  L  G Q
Sbjct: 815  KNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGN-KLDRVCLAECLSSCASLASLEEGMQ 873

Query: 279  IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
            +HG  ++  L+ D  + NA +DMY KCG +D   +V  D +       W++++SGY  +G
Sbjct: 874  LHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQ-CWNTLISGYAKYG 932

Query: 339  KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
               EA   + +MV  G KPD +T V +LSAC  +GL+++G++ YNS+ +++ + P  + C
Sbjct: 933  YFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHC 992

Query: 399  ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
             C+VD+LGR G+   A  FI+ MPV P+  IW +L+S+S  H N E+     K L++L+P
Sbjct: 993  VCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDP 1052

Query: 459  ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
             + S YV LSNLYA++ RW  V +LR+ MK   + K P CSW+ +  +   F + D+ H 
Sbjct: 1053 FDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHK 1112

Query: 519  CSVSIYEMLDDLILIMR 535
             +  IY  LD+++L +R
Sbjct: 1113 HAEKIYAKLDEMLLKLR 1129



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 189/405 (46%), Gaps = 39/405 (9%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q  SQ++  G  +   V+  LIT +   G+   ++ +F+ ++  D   +N++I+ Y    
Sbjct: 468 QVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQG 527

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
             ++   +FS+M +  + PD  TL ++  +       + G  IH L ++      V + N
Sbjct: 528 ICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVIN 587

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
           +L++MY   GK S+   LF  M +R++ SWN                             
Sbjct: 588 ALVNMYSAAGKLSDAEFLFWNMSRRDLISWNT---------------------------- 619

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
                 MI+ YVQN +  +AL    ++       PN ++  S L  CSS   L  GK +H
Sbjct: 620 ------MISSYVQNCNSTDALKTLGQL-FHTNESPNHLTFSSALGACSSPGALIDGKMVH 672

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
              ++  L  ++ + N+LI MY KC S++ A +VF+ S    D ++++ ++ GY +   G
Sbjct: 673 AIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQ-SMPTHDIVSYNVLIGGYAVLEDG 731

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG-LINEGLEIYNSVINTYRIKPTTEICA 399
            +A+ +++ M   G KP+ IT++ +  +   S  L N G  ++  +I T  +     +  
Sbjct: 732 TKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEY-VAN 790

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            ++ M  + G L+ + +   ++  +   S W A+++A+V  G+ E
Sbjct: 791 SLITMYAKCGNLESSTNIFNSITNKNIVS-WNAIIAANVQLGHGE 834



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 190/433 (43%), Gaps = 44/433 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+     G + N ++ T L+  Y   G  + +Q +F  +  ++V  + +L+     N   
Sbjct: 369 HALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYL 428

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EAL  +  M    V  +    AT+  L G +++   G+ +    I  G    V +ANSL
Sbjct: 429 EEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSL 488

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           ++M+   G+  +   LFD M + +  SWN                               
Sbjct: 489 ITMFGNLGRVHDAEKLFDRMEEHDTISWN------------------------------- 517

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
              AMI+ Y   G   +  ++F +M+    + P+  +L S++  C+S    S G  IH  
Sbjct: 518 ---AMISMYSHQGICSKCFLVFSDMR-HHGLRPDATTLCSLMSVCASSDHFSHGSGIHSL 573

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            +R  L+  V++ NAL++MYS  G L  A  +F + S  +D I+W++++S Y  +    +
Sbjct: 574 CLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMS-RRDLISWNTMISSYVQNCNSTD 632

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+    ++      P+ +T    L AC   G + +G ++ ++++    ++    +   ++
Sbjct: 633 ALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDG-KMVHAIVLQLSLQRNLLVGNSLI 691

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS--ASVMHGNSEMQDLAYKSLIQLEPEN 460
            M G+   ++ A    ++MP     S +  L+   A +  G   MQ  ++     ++P  
Sbjct: 692 TMYGKCNSMEDAEKVFQSMPTHDIVS-YNVLIGGYAVLEDGTKAMQVFSWMRSAGIKP-- 748

Query: 461 PSNYVSLSNLYAS 473
             NY+++ N++ S
Sbjct: 749 --NYITMINIHGS 759



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 177/397 (44%), Gaps = 45/397 (11%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA---TISKLSGE 133
           +F+ +  +    + + ++G V+   H +A E+   M    V    F LA   T  +  G 
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGR 358

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
            + +  G  IH L+ + G + +V +  +L+ +Y   G  S+   LF EMP+RNV SW   
Sbjct: 359 DEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSW--- 415

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                                          TA++     NG L+EAL  + +M+ +D +
Sbjct: 416 -------------------------------TALMVALSSNGYLEEALRAYRQMR-RDGV 443

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
             N  +  +V+  C SL     G Q+    I   L + VS+ N+LI M+   G +  A +
Sbjct: 444 PCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEK 503

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           +F D     D I+W++++S Y   G   +  L+++ M   G +PD  T+  ++S C  S 
Sbjct: 504 LF-DRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSD 562

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
             + G  I++  + +      T I A +V+M   AG+L  A      M      S W  +
Sbjct: 563 HFSHGSGIHSLCLRSSLDSSVTVINA-LVNMYSAAGKLSDAEFLFWNMSRRDLIS-WNTM 620

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPS-NYVSLSN 469
           +S+ V + NS     A K+L QL   N S N+++ S+
Sbjct: 621 ISSYVQNCNSTD---ALKTLGQLFHTNESPNHLTFSS 654



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 1/158 (0%)

Query: 27   LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
            L   A+  SL+   Q H   +  G  S+ +V    +  Y  CG+  +   V      +  
Sbjct: 859  LSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ 918

Query: 87   YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHG 145
              +N+LI+GY K     EA E F  M  +   PD  T   +         ++ G+   + 
Sbjct: 919  QCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNS 978

Query: 146  LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
            ++   G    +     ++ +  + G+F+E     +EMP
Sbjct: 979  MASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMP 1016


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 269/481 (55%), Gaps = 5/481 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  A   +L   +Q H+ I  LG +S+ FVS  LI  YA CG    ++ VF+ +
Sbjct: 89  TFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEM 148

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KDV  +NSLI GY + +   + L LF  M    V  D  T+  +      + D ++  
Sbjct: 149 VVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMAD 208

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +          VDV L N+L+  + + G+      +F  M  RN+ + N  I+ +A   
Sbjct: 209 YMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQ 268

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D   +V +R++FDQ+ ++++ +W++MI+GY Q     +AL +F +MQ + +++P+ + + 
Sbjct: 269 D---IVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQ-RAKVKPDAIVIA 324

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SV+ +C+ L  L  GK +H +  R  +  D  + N+LIDMY KCGS   A +VF++    
Sbjct: 325 SVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMK-E 383

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD ++W+SI+ G   +G   E++ L+  M+  G +P+ +T +GVL AC  + L+ EGL+ 
Sbjct: 384 KDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDH 443

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + S+   Y ++P  +   CVVD+LGRAGQL++AL FI  MP++P P +W  L+ +   HG
Sbjct: 444 FESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHG 503

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           +  + ++  K L +LEP N  NY  LSN YAS+ RW     +R  M D  ++KSPGCS +
Sbjct: 504 DVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAV 563

Query: 502 S 502
            
Sbjct: 564 E 564



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 183/431 (42%), Gaps = 70/431 (16%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP--TQSQLVFNSIQHKDVYLYNSLI 93
           ++  K+ H+  +  G  +  +  +K++ +YA+  QP    +  VF+ I+    +L+N LI
Sbjct: 1   MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAIL-QPDLVFAHKVFDQIEAPTTFLWNILI 59

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            G  ++    +A+  +       + PD+ T   I K    I  LN G  +H    K+G +
Sbjct: 60  RGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLL 119

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            D+ ++NSL+ +Y  CG      ++FDEM  ++V SWN                      
Sbjct: 120 SDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWN---------------------- 157

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                       ++I GY Q     + L LF  MQ  + ++ +KV+++ V+  C+ L   
Sbjct: 158 ------------SLICGYSQCNRFKDILALFKLMQ-NEGVKADKVTMIKVVSACTRLGDY 204

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF------------------ 315
           S    +  +     +  DV L N L+D + + G L  A +VF                  
Sbjct: 205 SMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAY 264

Query: 316 ------------EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
                        D    KD I+WSS++SGY       +A+ ++ +M     KPD I I 
Sbjct: 265 AKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIA 324

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            V+S+C   G ++ G  ++  V     IK  T +   ++DM  + G    AL   K M  
Sbjct: 325 SVVSSCAHLGALDLGKWVHEYVRRN-NIKADTIMENSLIDMYMKCGSAKEALQVFKEMKE 383

Query: 424 EPSPSIWGALV 434
           + + S W +++
Sbjct: 384 KDTLS-WNSII 393



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 144/288 (50%), Gaps = 12/288 (4%)

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           +V + +VFDQ++    + W  +I G  Q+    +A+  + + Q    + P+ ++   +L 
Sbjct: 37  LVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMV-PDNLTFPFILK 95

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C+ +  L+ G+Q+H    +  L  D+ + N+LI +Y+ CG+L  AR VF D    KD +
Sbjct: 96  ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVF-DEMVVKDVV 154

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W+S++ GY    +  + + L+  M   G K D +T++ V+SAC R G  +   +     
Sbjct: 155 SWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMA-DYMVRY 213

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           I  Y I+    +   +VD  GR GQL  A      M V    ++  A+++A      ++ 
Sbjct: 214 IEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTM-NAMIAAY-----AKG 267

Query: 446 QDL--AYKSLIQLEPENPSNYVSLSNLYASSRRW-DAVAELRTMMKDR 490
           QD+  A K   Q+  ++  ++ S+ + Y+ +  + DA+   R M + +
Sbjct: 268 QDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAK 315


>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
          Length = 502

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 162/494 (32%), Positives = 275/494 (55%), Gaps = 41/494 (8%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           +S  +   L+  A   +L    Q H+Q L  G + +  + T L+  Y+ CG   +++ VF
Sbjct: 5   SSGRLSALLRRCAASGALSPGAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRAREVF 64

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +    ++ YN L+     +     A++L S +  S + PD +++  + +   E +D  
Sbjct: 65  DGMPSPSMHAYNVLLAASPPD----AAVKLVSRLVASGLRPDRYSVPAVLRACAESRDAL 120

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G ++HG ++++G + +V+++ +L+ MY K G   +                        
Sbjct: 121 LGSVLHGFAVRLGLLANVVVSGALLDMYAKTGTLGD------------------------ 156

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                     + RVFD+M  R+  AW  M+ GY + G  +E L LF + Q++       +
Sbjct: 157 ----------AGRVFDEMPERDAVAWNCMVTGYARAGRSEETLELFRKAQIESAGMARDL 206

Query: 259 SLV-SVLPTCSSLIGLSGGKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
             V SVL  C+    L  G++IHG   R    + D  + NALIDMY KCG +D A+ VF 
Sbjct: 207 RAVPSVLNVCADEGQLMKGREIHGRMARCLASSSDTVVGNALIDMYGKCGQVDGAQAVFA 266

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
            S   K+ ++WSS++S YG+HG G EA+ +Y +MV +G KP+ +T V +LS+C  SGL++
Sbjct: 267 -SMEEKNVVSWSSLISCYGVHGMGKEALRVYEEMVSVGVKPNCVTFVSILSSCSHSGLVS 325

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +G  I+ S+   + ++PT +  AC+VD+LGRAG ++ A+  +  MP+EP  S+WGAL+SA
Sbjct: 326 DGRRIFESMRKVHAVEPTADHYACMVDLLGRAGAIEEAVGLVNEMPMEPGASLWGALLSA 385

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N ++ ++A   L +LE +N SNYV+L  +Y +  R D+VA LR+ M++ G+ K+P
Sbjct: 386 CAIHNNVDVGEVAAYRLFELEEDNASNYVTLCGIYDAIGRSDSVAGLRSRMRELGMVKTP 445

Query: 497 GCSWISIHGKTHCF 510
           GCSW+ + G+ + F
Sbjct: 446 GCSWVHVKGRAYAF 459



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 15/194 (7%)

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+   L ++L  C++   LS G Q+H  A+      D +L   L+ +YS+CG+L  AR V
Sbjct: 4   PSSGRLSALLRRCAASGALSPGAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRAREV 63

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F D   +     ++ +++          AV L +++V  G +PD  ++  VL AC  S  
Sbjct: 64  F-DGMPSPSMHAYNVLLAA----SPPDAAVKLVSRLVASGLRPDRYSVPAVLRACAES-- 116

Query: 375 INEGLEIYNSVINTYRIK----PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
             + L    SV++ + ++        +   ++DM  + G L  A      MP E     W
Sbjct: 117 -RDAL--LGSVLHGFAVRLGLLANVVVSGALLDMYAKTGTLGDAGRVFDEMP-ERDAVAW 172

Query: 431 GALVSASVMHGNSE 444
             +V+     G SE
Sbjct: 173 NCMVTGYARAGRSE 186


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 172/496 (34%), Positives = 277/496 (55%), Gaps = 38/496 (7%)

Query: 36  LKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           LKL K+ H   L  G I S+  V+   +  YA CG    ++ VF  ++ K V  +N+LI 
Sbjct: 417 LKL-KEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIG 475

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G+V+N    +AL+L+  M  S + PD FT+A++      +K L+ G  IHG  ++ GF +
Sbjct: 476 GHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFEL 535

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D  +  SL+S+YV+CGK                                  ++ ++  FD
Sbjct: 536 DEFICISLVSLYVQCGK----------------------------------ILLAKLFFD 561

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            M+ +N+  W  MING+ QN    +AL +F +M L  +I P+++S++  L  CS +  L 
Sbjct: 562 NMEEKNLVCWNTMINGFSQNEFPFDALDMFHQM-LSSKIWPDEISIIGALGACSQVSALR 620

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK++H FA++  L     +  +LIDMY+KCG ++ ++ +F D    K  +TW+ +++GY
Sbjct: 621 LGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIF-DRVHLKGEVTWNVLITGY 679

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           G+HG G +A+ L+  M   G +PD +T + +L+AC  +GL+ EGLE    + + + IKP 
Sbjct: 680 GIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPK 739

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E  ACVVDMLGRAG+L+ AL+ +  +P +P   IW +L+S+   + + ++ +     L+
Sbjct: 740 LEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLL 799

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +L P+   NYV +SN YA   +WD V ++R  MK+ GL+K  GCSWI I GK   F V D
Sbjct: 800 ELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGD 859

Query: 515 KAHPCSVSIYEMLDDL 530
           ++   S+ I +   +L
Sbjct: 860 ESLLQSMKIQQTWIEL 875



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 236/483 (48%), Gaps = 76/483 (15%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFV-STKLITAYALCGQPTQSQLVFNSIQHK 84
            LQ+   ++++++ ++ H+ I +  H  N  V  T+L+T Y++C  P  S LVFN+ + K
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           +++L+N+L++GY++N    +A+ +F  M   +   PD+FTL  + K    + D+ +G  +
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAV 218

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HG ++K   + DV + N+L++MY K G     + +FD+MPQRN+ SWN  +     +G F
Sbjct: 219 HGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVF 278

Query: 204 ----------------------SLV-----------VRSRRVFDQMKRR-----NVYAWT 225
                                 ++V           VR   VF  +  +      +   +
Sbjct: 279 EESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNS 338

Query: 226 AMINGYVQNGDLDEALVLF--------------------------LEMQLKDRIEP---- 255
           ++++ Y + G L EA VLF                           E+  K ++E     
Sbjct: 339 SLLDMYSKCGYLCEARVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKV 398

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRV 314
           N+V+L++VLP C   I     K+IHG+A+R   +  D  + NA +  Y+KCGSL  A  V
Sbjct: 399 NEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGV 458

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F     +K   +W++++ G+  +G   +A+ LY  M   G +PD+ TI  +LSAC R   
Sbjct: 459 FCGME-SKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKS 517

Query: 375 INEGLEIYNSVI-NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
           ++ G EI+ S++ N + +     IC  +V +  + G++  A  F   M  E +   W  +
Sbjct: 518 LSCGKEIHGSMLRNGFELDEF--ICISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNTM 574

Query: 434 VSA 436
           ++ 
Sbjct: 575 ING 577



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 172/364 (47%), Gaps = 53/364 (14%)

Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHG-LSIKIGFVVDVILANSLMSMYVKC-GKF 172
           SN  P    +  + +L GE K++ +G  IH  +S    F  DV+L   L++MY  C   +
Sbjct: 88  SNSKPKQL-IGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPY 146

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
             CL                                   VF+  +R+N++ W A+++GY+
Sbjct: 147 DSCL-----------------------------------VFNASRRKNLFLWNALLSGYL 171

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           +N    +A+ +F+EM       P+  +L  V+  C  +  +  G+ +HGFA++ ++  DV
Sbjct: 172 RNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDV 231

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            + NALI MY K G ++ A +VF D    ++ ++W+S++     +G   E+  L+  ++ 
Sbjct: 232 FVGNALIAMYGKFGFVESAVKVF-DKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLN 290

Query: 353 --LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G  PD+ T+V V+  C R G +  G+ +++ +     +    ++ + ++DM  + G 
Sbjct: 291 GDEGLMPDVATMVTVIPLCARQGEVRLGM-VFHGLALKLGLCGELKVNSSLLDMYSKCGY 349

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL--AYKSL--IQLEPENPSNYVS 466
           L  A     T   E +   W +++      G S+ +D   A++ L  +Q+E +   N V+
Sbjct: 350 LCEARVLFDTN--EKNVISWNSMIG-----GYSKDRDFRGAFELLRKMQMEDKVKVNEVT 402

Query: 467 LSNL 470
           L N+
Sbjct: 403 LLNV 406



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 141/316 (44%), Gaps = 44/316 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A  +SL   K+ H  +L  G   + F+   L++ Y  CG+   ++L F+++
Sbjct: 504 TIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNM 563

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + K++  +N++ING+ +N    +AL++F  M  S + PD+ ++        ++  L +G 
Sbjct: 564 EEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGK 623

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H  ++K        +  SL+ MY KCG   +  N+FD +  +   +WNV         
Sbjct: 624 ELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNV--------- 674

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                    +I GY  +G   +A+ LF  MQ      P+ V+ +
Sbjct: 675 -------------------------LITGYGIHGHGRKAIELFKSMQ-NAGFRPDSVTFI 708

Query: 262 SVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           ++L  C+    ++ G +  G     F I+ +L H       ++DM  + G L+ A  +  
Sbjct: 709 ALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYA----CVVDMLGRAGRLNEALELVN 764

Query: 317 DSSFNKDAITWSSIVS 332
           +     D+  WSS++S
Sbjct: 765 ELPDKPDSRIWSSLLS 780



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 18/220 (8%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           QVSA    L+L K+ H   +      + FV+  LI  YA CG   QSQ +F+ +  K   
Sbjct: 615 QVSA----LRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEV 670

Query: 88  LYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
            +N LI GY   HGH  +A+ELF +M  +   PD  T   +          + G++  GL
Sbjct: 671 TWNVLITGY-GIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACN-----HAGLVAEGL 724

Query: 147 S----IKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHAS 199
                ++  F +   L +   ++ M  + G+ +E L L +E+P + +   W+  +S   +
Sbjct: 725 EYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRN 784

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
             D  +  +      ++       +  + N Y + G  DE
Sbjct: 785 YRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDE 824


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 186/573 (32%), Positives = 284/573 (49%), Gaps = 69/573 (12%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LK  K  H+ +L LG   + ++  K++      G    S  + +  +  +++L+N++I G
Sbjct: 23  LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
            V N    E++E++ +M    +SPD FT   + K    + D  +G+ +H L +K G   D
Sbjct: 83  LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD------------- 202
             +  SL+++Y KCG       +FD++P +N  SW   ISG+   G              
Sbjct: 143 AFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLE 202

Query: 203 -------FSLV-----------VRSRRVFDQMKR-----RNVYAWTA------------- 226
                  FSLV           +RS    D+        RNV+  TA             
Sbjct: 203 MGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMER 262

Query: 227 ------------------MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
                             MI GY  NG   EAL LF +M L + ++P+  ++V VL +C+
Sbjct: 263 ARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKM-LNEGLKPDCYAMVGVLCSCA 321

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
            L  L  G          E   +  L  ALIDMY+KCG +D A  VF      KD + W+
Sbjct: 322 RLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMR-KKDRVVWN 380

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           + +SG  + G   +A+ L+ +M   G KPD  T VG+L AC  +GL+ EG   +NS+   
Sbjct: 381 AAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECV 440

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           + + P  E   C+VD+LGRAG LD A   IK+MP+E +  +WGAL+    +H ++++ ++
Sbjct: 441 FTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEV 500

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
             K LI LEP +  NYV LSN+YA+S +W+  A++R++M +RG+KK PG SWI + G  H
Sbjct: 501 VLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVH 560

Query: 509 CFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            F V D +HP S  IY  L +L   ++ A   P
Sbjct: 561 QFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVP 593


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 180/587 (30%), Positives = 296/587 (50%), Gaps = 70/587 (11%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  A   S++  +  H  +  LG  S   V   L+  YA   +   + LVF+ +
Sbjct: 198 TISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGM 257

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            H+DV  +NS+I+G   N  +++A+ELF  M+      D  TL ++     E+  L +G 
Sbjct: 258 PHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGR 317

Query: 142 LIHGLSIKIGFVVDVILANSLMSM-------------------------------YVKCG 170
           ++HG S+K GF+    LAN L+ M                               Y + G
Sbjct: 318 VVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAG 377

Query: 171 KFSECLNLFDEMPQRNVGS--WNVRISGHASSGDFSL----------------------- 205
            + +   LF EM         + +  + HA +G+  L                       
Sbjct: 378 LYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTN 437

Query: 206 -----------VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
                      +  ++ +FD +  +++ +W  +I GY +N   +EA  LF EM L+ R  
Sbjct: 438 ALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLR-- 495

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           PN V++  +LP  +SL  L  G+++H +A+R+    D  + NALIDMY KCG+L  ARR+
Sbjct: 496 PNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRL 555

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F+  S NK+ I+W+ +V+GYG+HG+G +A+ L+ +M   G  PD  +   +L AC  SGL
Sbjct: 556 FDRLS-NKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGL 614

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
            +EG   ++++   ++I+P  +   C+VD+L   G L  A +FI +MP+EP  SIW +L+
Sbjct: 615 RDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLL 674

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
               +H N ++ +   + + +LEPEN   YV L+N+YA + RW+AV +L+  +  RGL++
Sbjct: 675 RGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRE 734

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           + GCSWI   GK H F   ++ HP    I E L+++   M+     P
Sbjct: 735 NTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDP 781



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 205/437 (46%), Gaps = 43/437 (9%)

Query: 27  LQVSATHRSLKLTKQSHSQIL--SLGHIS-NPFVSTKLITAYALCGQPTQSQLVFNSI-Q 82
           LQ+ +  RSL+  K++H  +   SLG    +  +  KL+  Y  CG    ++ VF+ + Q
Sbjct: 98  LQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQ 157

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
             DV ++ +L++GY K     E + LF  M+   V PD +T++ + K    +  +  G +
Sbjct: 158 VSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEV 217

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +HGL  K+GF     + N+LM+ Y K  +  + + +FD MP R+V SWN           
Sbjct: 218 VHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWN----------- 266

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                                  +MI+G   NG  D+A+ LF+ M L+   E +  +L+S
Sbjct: 267 -----------------------SMISGCTSNGLYDKAIELFVRMWLEGE-ELDSATLLS 302

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VLP C+ L  L  G+ +HG++++       SL N L+DMYS C       ++F +    K
Sbjct: 303 VLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRN-MVQK 361

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           + ++W+++++ Y   G   +   L+ +M   G++PDI  I   L A   + L+  G  ++
Sbjct: 362 NVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVH 421

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA-SVMHG 441
              I    ++    +   +++M  + G ++ A   I    V      W  L+   S  + 
Sbjct: 422 GYAIRN-GMEKVLAVTNALMEMYVKCGNMEEA-KLIFDGVVSKDMISWNTLIGGYSRNNL 479

Query: 442 NSEMQDLAYKSLIQLEP 458
            +E   L  + L+QL P
Sbjct: 480 ANEAFSLFTEMLLQLRP 496



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 15/224 (6%)

Query: 225 TAMINGYVQ----NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
           T+ +N ++Q    +GDL+EAL L     + DR      S  +VL  CS +  L GGK+ H
Sbjct: 61  TSDVNLHIQRLCRSGDLEEALGLLGSDGVDDR------SYGAVLQLCSEVRSLEGGKRAH 114

Query: 281 GFAIRKELNHDVS---LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
                  L  D     L   L+ MY KCG L+ ARRVF++     D   W++++SGY   
Sbjct: 115 FLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKA 174

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G   E VLL+ KM C G +PD  TI  VL      G I +G E+ + ++          +
Sbjct: 175 GDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDG-EVVHGLLEKLGFGSQCAV 233

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
              ++    ++ +   A+     MP     S W +++S    +G
Sbjct: 234 GNALMAFYAKSNRTKDAILVFDGMPHRDVIS-WNSMISGCTSNG 276



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 57/108 (52%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L  +A+  SL+  ++ H+  L  G++ + FV+  LI  Y  CG    ++ +F+
Sbjct: 498 AVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFD 557

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            + +K++  +  ++ GY  +    +A+ LF  M  S ++PD  + + I
Sbjct: 558 RLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAI 605


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 158/436 (36%), Positives = 260/436 (59%), Gaps = 25/436 (5%)

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
           ++ PD  +L  +      +     G  +HG++++ G   D+ + N+L+ MY KCG   E 
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN----VYAWTAMINGY 231
             +FD + +++V SWN  ++G++  G F     +  +F++M+  N    V +W+A+I  +
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFE---DALGLFEKMREENIELNVVSWSAVIAAF 124

Query: 232 VQNGDLDEALVLFLEMQLKDR----------------IEPNKVSLVSVLPTCSSLIGLSG 275
            Q G   E L +F EMQ  +                 ++PN  ++   L  C+ L  L  
Sbjct: 125 AQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRL 184

Query: 276 GKQIHGFAIRKELNHD-VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
           G+QIH + +R   +   + + N LIDMY+K G +D AR VF D+   K+ ++W+S+++GY
Sbjct: 185 GRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVF-DNLKQKNFVSWTSLMTGY 243

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           G+HG+G EA+ ++++M  +G +PD +T++ VL AC  SG+I++G+E +NS+   + + P 
Sbjct: 244 GMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPG 303

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E  AC+VD+LGRAG+L+ A++ I+ M +EPS  +W AL+S   +H N E+ + A K L+
Sbjct: 304 QEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLL 363

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +L  EN  +Y  LSN+YA++RRW  VA +R++MK+ G++K PGCSW+     T  F VAD
Sbjct: 364 ELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVAD 423

Query: 515 KAHPCSVSIYEMLDDL 530
           K HP S  IYE+L  L
Sbjct: 424 KTHPQSKQIYEILRSL 439



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 135/356 (37%), Gaps = 95/356 (26%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK- 98
           K  H   +  G   + FV   L+  YA CG   ++  VF+ I+ KDV  +N+++NGY + 
Sbjct: 33  KAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQI 92

Query: 99  ------------------------------------------------NHGH-NEALELF 109
                                                            HG  N+ALELF
Sbjct: 93  GRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELF 152

Query: 110 SNMYYSN--VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI-LANSLMSMY 166
           S M+  +  V P+ FT++        +  L +G  IH   ++  F    + +AN L+ MY
Sbjct: 153 SWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMY 212

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
            K G       +FD + Q+N  SW   ++G+   G       +  VFD+M+R        
Sbjct: 213 AKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGK---EALEVFDEMRRVG------ 263

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
                                     ++P+ V+L+ VL  CS    +  G +    ++ K
Sbjct: 264 --------------------------LQPDGVTLLVVLYACSHSGMIDQGIEFFN-SMSK 296

Query: 287 EL----NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           E       +   C  ++D+  + G L+ A  + E       +I W +++SG  +H 
Sbjct: 297 EFGVIPGQEHYAC--MVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHA 350



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPF--VSTKLITAYALCGQPTQSQLVFN 79
           T+   L   A   +L+L +Q H+ IL   H  + F  V+  LI  YA  G    ++ VF+
Sbjct: 168 TISCALIACARLAALRLGRQIHAYILR-NHFDSAFLYVANCLIDMYAKSGDIDVARFVFD 226

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           +++ K+   + SL+ GY  +    EALE+F  M    + PD  TL  +         ++ 
Sbjct: 227 NLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQ 286

Query: 140 GM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           G+   + +S + G +        ++ +  + G+ +E + L + M
Sbjct: 287 GIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGM 330


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 169/525 (32%), Positives = 272/525 (51%), Gaps = 37/525 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T      F+   A  ++L   ++ H+ + S     + F+   LI  Y  CG   ++  VF
Sbjct: 50  TPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVF 109

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +++KD+  + SLI GY +N    EA+ L   M      P+ FT A++ K  G   D  
Sbjct: 110 DKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSG 169

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  IH L++K  +  DV + ++L+ MY +CGK                           
Sbjct: 170 IGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMD------------------------- 204

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                     +  VFD++  +N  +W A+I+G+ + GD + AL++F EMQ ++  E    
Sbjct: 205 ---------MATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQ-RNGFEATHF 254

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +  S+    + +  L  GK +H   I+        + N ++DMY+K GS+  AR+VFE  
Sbjct: 255 TYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFE-R 313

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
             NKD +TW+S+++ +  +G G EAV  + +M   G   + I+ + +L+AC   GL+ EG
Sbjct: 314 VLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEG 373

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
            + Y  +I  Y ++P  E    VVD+LGRAG L+ AL FI  MP+EP+ ++WGAL++A  
Sbjct: 374 -KHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACR 432

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           MH N+++   A   + QL+P++    V L N+YAS+  WDA A +R MMK  G+KK P C
Sbjct: 433 MHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPAC 492

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           SW+ I    H F   D  HP +  IY+M D++ + +R     P +
Sbjct: 493 SWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDM 537


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 170/506 (33%), Positives = 280/506 (55%), Gaps = 36/506 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LK  K+ H  I+      + F+ + L+  Y  C     +Q ++++ +  DV + +++I+G
Sbjct: 359 LKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISG 418

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           YV N    EAL++F  +    + P+  T+A++      +  L +G  IHG  ++  +   
Sbjct: 419 YVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERK 478

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             + ++LM MY KCG+    L+L                              S  +F +
Sbjct: 479 CYVESALMDMYAKCGR----LDL------------------------------SHYIFLK 504

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M +++   W +MI+ + QNG   EAL LF +M ++  I+ N +++ + L  C+SL  +  
Sbjct: 505 MSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEG-IKYNNITISAALSACASLPAIYY 563

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK+IHG  I+  +  D+   +ALIDMY+KCG+L+ A RVFE    +K+ ++W+SI+S YG
Sbjct: 564 GKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMP-DKNEVSWNSIISAYG 622

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            HG   E+V L + M   G KPD +T + ++SAC  +GL+ EG++++  +   Y I P  
Sbjct: 623 AHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRM 682

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           E  AC+VD+  R+G+LD+A+ FI  MP +P   IWGAL+ A  +H N E+ D+A + L +
Sbjct: 683 EHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFK 742

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           L+P N   YV +SN+ A + RWD V+++R +MKD  + K PG SW+ ++  +H F  +DK
Sbjct: 743 LDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDK 802

Query: 516 AHPCSVSIYEMLDDLILIMRGAAASP 541
           +HP S  IY  L  L+  +R     P
Sbjct: 803 SHPESEDIYTSLKTLLQELREEGYVP 828



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 215/424 (50%), Gaps = 40/424 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + ++  A   ++ L +  H    ++G  ++ +V + L+  YA  G    ++  F+ I
Sbjct: 143 TLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGI 202

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D  L+N +++G +K    + A+ LF NM  S   P+  TLA    +     DL  G 
Sbjct: 203 PERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGA 262

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H L++K G   +V +AN+L++MY KC    +CL+           +W           
Sbjct: 263 QLHSLAVKCGLEPEVAVANTLLAMYAKC----QCLD----------DAW----------- 297

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                    R+F+ M + ++  W  MI+G VQNG   EA  LF +MQ +    P+ ++LV
Sbjct: 298 ---------RLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQ-RSGARPDSITLV 347

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+LP  + L GL  GK++HG+ +R  +N DV L +AL+D+Y KC  +  A+ ++ D++  
Sbjct: 348 SLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLY-DAARA 406

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
            D +  S+++SGY L+G   EA+ ++  ++    KP+ +TI  VL  C     +  G +I
Sbjct: 407 IDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQI 466

Query: 382 YNSVI-NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           +  V+ N Y  K   E  + ++DM  + G+LD +  +I     +     W +++S+   +
Sbjct: 467 HGYVLRNAYERKCYVE--SALMDMYAKCGRLDLS-HYIFLKMSQKDEVTWNSMISSFSQN 523

Query: 441 GNSE 444
           G  +
Sbjct: 524 GKPQ 527



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 169/366 (46%), Gaps = 46/366 (12%)

Query: 29  VSATHRSLKLTKQSHSQILSLGHISNP---FVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           VSA H  L L  Q H++ +  G +S+     + T+L+  Y L  +   +  VF+++    
Sbjct: 43  VSAPHLPLGL--QIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAA 100

Query: 86  V---YLYNSLINGYVKNHGHNEALELFSNMYY--SNVSPDDFTLATISKLSGEIKDLNVG 140
                 +N LI G+     H+ A+  +  M+   +  SPD  TL  + K    +  +++G
Sbjct: 101 AASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLG 160

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
            L+H  +  IG   DV + ++L+ MY   G      + FD +P+R+   WNV + G    
Sbjct: 161 RLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDG---- 216

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                          ++ GD+D A+ LF  M+     EPN  +L
Sbjct: 217 ------------------------------CIKAGDVDGAVRLFRNMRASG-CEPNFATL 245

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
              L  C++   L  G Q+H  A++  L  +V++ N L+ MY+KC  LD A R+FE    
Sbjct: 246 ACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMP- 304

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
             D +TW+ ++SG   +G   EA  L+  M   G++PD IT+V +L A      + +G E
Sbjct: 305 QDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKE 364

Query: 381 IYNSVI 386
           ++  ++
Sbjct: 365 VHGYIV 370



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 138/322 (42%), Gaps = 42/322 (13%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L   A+  +L L +Q H  +L   +    +V + L+  YA CG+   S  +F 
Sbjct: 444 AVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFL 503

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  KD   +NS+I+ + +N    EAL+LF  M    +  ++ T++        +  +  
Sbjct: 504 KMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYY 563

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IHG++IK     D+   ++L+ MY KCG     L +F+ MP +N  SWN  IS + +
Sbjct: 564 GKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGA 623

Query: 200 SGDFSLVVRSRRVFDQMKRRNV----YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
            G   LV  S  +   M+          + A+I+     G ++E + LF  M  K  I P
Sbjct: 624 HG---LVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAP 680

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
                                 ++  FA              ++D+YS+ G LD A +  
Sbjct: 681 ----------------------RMEHFA-------------CMVDLYSRSGKLDKAIQFI 705

Query: 316 EDSSFNKDAITWSSIVSGYGLH 337
            D  F  DA  W +++    +H
Sbjct: 706 ADMPFKPDAGIWGALLHACRVH 727



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 132/309 (42%), Gaps = 38/309 (12%)

Query: 137 LNVGMLIHGLSIKIGFVVD---VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           L +G+ IH  ++  G + D   + L   L+ MYV   +F + + +F  +P+         
Sbjct: 48  LPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPR--------- 98

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
            +  ASS                       W  +I G+   G    A++ +++M      
Sbjct: 99  -AAAASS---------------------LPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAA 136

Query: 254 -EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
             P+  +L  V+ +C++L  +S G+ +H  A    L +DV + +AL+ MY+  G L  AR
Sbjct: 137 PSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNAR 196

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
             F D    +D + W+ ++ G    G    AV L+  M   G +P+  T+   LS C   
Sbjct: 197 DAF-DGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATD 255

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
             +  G ++++  +    ++P   +   ++ M  +   LD A    + MP +     W  
Sbjct: 256 ADLLSGAQLHSLAVKC-GLEPEVAVANTLLAMYAKCQCLDDAWRLFELMP-QDDLVTWNG 313

Query: 433 LVSASVMHG 441
           ++S  V +G
Sbjct: 314 MISGCVQNG 322



 Score = 45.4 bits (106), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 11/193 (5%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAI----RKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           L++VL  C S   L  G QIH  A+      + NH ++L   L+ MY        A  VF
Sbjct: 35  LLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNH-LALHTRLLGMYVLARRFRDAVAVF 93

Query: 316 E--DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC--LGSKPDIITIVGVLSACGR 371
                +    ++ W+ ++ G+   G+ H AVL Y KM        PD  T+  V+ +C  
Sbjct: 94  SALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAA 153

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
            G ++ G  ++ +      +     + + +V M   AG L  A D    +P E    +W 
Sbjct: 154 LGAMSLGRLVHRTA-RAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIP-ERDCVLWN 211

Query: 432 ALVSASVMHGNSE 444
            ++   +  G+ +
Sbjct: 212 VMMDGCIKAGDVD 224



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 14/182 (7%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            Y + T+   L   A+  ++   K+ H   +     ++ F  + LI  YA CG    +  
Sbjct: 542 KYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALR 601

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIK 135
           VF  +  K+   +NS+I+ Y  +    E++ L   M      PD  T LA IS  +    
Sbjct: 602 VFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACA---- 657

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANS------LMSMYVKCGKFSECLNLFDEMP-QRNVG 188
             + G++  G+ +        ++A        ++ +Y + GK  + +    +MP + + G
Sbjct: 658 --HAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAG 715

Query: 189 SW 190
            W
Sbjct: 716 IW 717


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 168/518 (32%), Positives = 270/518 (52%), Gaps = 37/518 (7%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           F+   A  ++L   ++ H  + S     + F+   LI  Y  CG   ++  VF+ ++ KD
Sbjct: 57  FITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKD 116

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           +  + SLI GY +N    EA+ L   M      P+ FT A++ K +G   D  +G  IH 
Sbjct: 117 MVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHA 176

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
           L++K  +  DV + ++L+ MY +CGK                                  
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGKMD-------------------------------- 204

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
              +  VFD++  +N  +W A+I+G+ + GD + AL++F EMQ ++  E    +  S+  
Sbjct: 205 --MATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQ-RNGFEATHFTYSSIFS 261

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
             + +  L  GK +H   ++        + N ++DMY+K GS+  AR+VFE    NKD +
Sbjct: 262 GLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFE-RVLNKDLV 320

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           TW+S+++ +  +G G EAV  + +M   G   + IT + +L+AC   GL+ EG + Y  +
Sbjct: 321 TWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEG-KHYFDM 379

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           I  Y ++P  E    VVD+LGRAG L+ AL FI  MP+EP+ ++WGAL++A  MH N+++
Sbjct: 380 IKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKV 439

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
              A   + QL+P++    V L N+YAS+  WDA A +R MMK  G+KK P CSW+ I  
Sbjct: 440 GQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGN 499

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
             H F   D  HP +  IY+M D++ + +R     P +
Sbjct: 500 SVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDM 537



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 134/319 (42%), Gaps = 41/319 (12%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+ +  +    +  Q H+  +      + +V + L+  YA CG+   +  VF+ +
Sbjct: 154 TFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI-SKLSGEIKDLNVG 140
             K+   +N+LI+G+ +      AL +F+ M  +      FT ++I S L+G I  L  G
Sbjct: 214 DSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAG-IGALEQG 272

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             +H   +K    +   + N+++ MY K G   +   +F+ +  +++ +WN         
Sbjct: 273 KWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWN--------- 323

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                    +M+  + Q G   EA+  F EM+ K  I  N+++ 
Sbjct: 324 -------------------------SMLTAFAQYGLGKEAVSHFEEMR-KSGIYLNQITF 357

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN--ALIDMYSKCGSLDCARRVFEDS 318
           + +L  CS    +  GK  H F + KE N +  + +   ++D+  + G L+ A       
Sbjct: 358 LCILTACSHGGLVKEGK--HYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKM 415

Query: 319 SFNKDAITWSSIVSGYGLH 337
                A  W ++++   +H
Sbjct: 416 PMEPTAAVWGALLAACRMH 434


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 170/515 (33%), Positives = 273/515 (53%), Gaps = 35/515 (6%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           ++  A+  S+++ KQ H   L  G  S  FV + L   Y+ CG    +  VF  +  KD 
Sbjct: 113 IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE 172

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             + ++I+GY K     EAL  F  M    V+ D   L +     G +K    G  +H  
Sbjct: 173 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 232

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            +K+GF  D+ + N+L  MY K G      N+F       + S                 
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVF------GIDS----------------- 269

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                     + RNV ++T +I+GYV+   +++ L +F+E++ +  IEPN+ +  S++  
Sbjct: 270 ----------ECRNVVSYTCLIDGYVETEQIEKGLSVFVELR-RQGIEPNEFTFSSLIKA 318

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C++   L  G Q+H   ++   + D  + + L+DMY KCG L+ A + F++   +   I 
Sbjct: 319 CANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIG-DPTEIA 377

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+S+VS +G HG G +A+ ++ +MV  G KP+ IT + +L+ C  +GL+ EGL+ + S+ 
Sbjct: 378 WNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMD 437

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
            TY + P  E  +CV+D+LGRAG+L  A +FI  MP EP+   W + + A  +HG+ EM 
Sbjct: 438 KTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMG 497

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
            LA + L++LEP+N    V LSN+YA+ R+W+ V  +R  M+D  +KK PG SW+ +  K
Sbjct: 498 KLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYK 557

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           TH F   D +HP   +IYE LD L+  ++ A   P
Sbjct: 558 THVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVP 592



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 37/295 (12%)

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D   LA + +   + K L  G  +H L I  G+     L N L++MY KCG+    L LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D MP                                  +RN+ +WTAMI+G  QN    E
Sbjct: 64  DTMP----------------------------------QRNLVSWTAMISGLSQNSKFSE 89

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           A+  F  M++   + P + +  S +  C+SL  +  GKQ+H  A++  +  ++ + + L 
Sbjct: 90  AIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLE 148

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           DMYSKCG++  A +VFE+    KD ++W++++ GY   G+  EA+L + KM+      D 
Sbjct: 149 DMYSKCGAMFDACKVFEEMP-CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQ 207

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
             +   L ACG       G  +++SV+     +    +   + DM  +AG ++ A
Sbjct: 208 HVLCSTLGACGALKACKFGRSVHSSVVK-LGFESDIFVGNALTDMYSKAGDMESA 261



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 3/199 (1%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +L  V+ T +    L  GKQ+H   I         L N L++MYSKCG LD A ++F D+
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF-DT 65

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              ++ ++W++++SG   + K  EA+  +  M   G  P        + AC   G I  G
Sbjct: 66  MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 125

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
            +++   +  + I     + + + DM  + G +  A    + MP +   S W A++    
Sbjct: 126 KQMHCLALK-FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDGYS 183

Query: 439 MHGNSEMQDLAYKSLIQLE 457
             G  E   LA+K +I  E
Sbjct: 184 KIGEFEEALLAFKKMIDEE 202



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 14/237 (5%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    ++  A   +L+   Q H+Q++ +    +PFVS+ L+  Y  CG   Q+   F+ I
Sbjct: 311 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEI 370

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
                  +NSL++ + ++    +A+++F  M    V P+  T   IS L+G     + G+
Sbjct: 371 GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF--ISLLTG---CSHAGL 425

Query: 142 LIHGLSI------KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRI 194
           +  GL          G V      + ++ +  + G+  E     + MP + N   W   +
Sbjct: 426 VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 485

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                 GD  +   +     +++ +N  A   + N Y      ++  V  + M+++D
Sbjct: 486 GACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWED--VRSVRMRMRD 540


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  307 bits (786), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 169/497 (34%), Positives = 262/497 (52%), Gaps = 37/497 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K  H+ +L L    N  V   LIT Y  C     ++ VF S+   D+  YN LI GY   
Sbjct: 367 KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVL 426

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL-NVGMLIHGLSIKIGFVVDVIL 158
               +A+++FS M  + + P+  T+  I        DL N G  +H   I+ GF+ D  +
Sbjct: 427 EDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYV 486

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
           ANSL++MY KCG      N                                  +F+ +  
Sbjct: 487 ANSLITMYAKCGNLESSTN----------------------------------IFNSITN 512

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           +N+ +W A+I   VQ G  +EAL LF++MQ     + ++V L   L +C+SL  L  G Q
Sbjct: 513 KNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGN-KLDRVCLAECLSSCASLASLEEGMQ 571

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HG  ++  L+ D  + NA +DMY KCG +D   +V  D +       W++++SGY  +G
Sbjct: 572 LHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQ-CWNTLISGYAKYG 630

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              EA   + +MV  G KPD +T V +LSAC  +GL+++G++ YNS+ +++ + P  + C
Sbjct: 631 YFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHC 690

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C+VD+LGR G+   A  FI+ MPV P+  IW +L+S+S  H N E+     K L++L+P
Sbjct: 691 VCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDP 750

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
            + S YV LSNLYA++ RW  V +LR+ MK   + K P CSW+ +  +   F + D+ H 
Sbjct: 751 FDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHK 810

Query: 519 CSVSIYEMLDDLILIMR 535
            +  IY  LD+++L +R
Sbjct: 811 HAEKIYAKLDEMLLKLR 827



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 189/405 (46%), Gaps = 39/405 (9%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q  SQ++  G  +   V+  LIT +   G+   ++ +F+ ++  D   +N++I+ Y    
Sbjct: 166 QVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQG 225

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
             ++   +FS+M +  + PD  TL ++  +       + G  IH L ++      V + N
Sbjct: 226 ICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVIN 285

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
           +L++MY   GK S+   LF  M +R++ SWN                             
Sbjct: 286 ALVNMYSAAGKLSDAEFLFWNMSRRDLISWNT---------------------------- 317

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
                 MI+ YVQN +  +AL    ++       PN ++  S L  CSS   L  GK +H
Sbjct: 318 ------MISSYVQNCNSTDALKTLGQL-FHTNESPNHLTFSSALGACSSPGALIDGKMVH 370

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
              ++  L  ++ + N+LI MY KC S++ A +VF+ S    D ++++ ++ GY +   G
Sbjct: 371 AIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQ-SMPTHDIVSYNVLIGGYAVLEDG 429

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG-LINEGLEIYNSVINTYRIKPTTEICA 399
            +A+ +++ M   G KP+ IT++ +  +   S  L N G  ++  +I T  +     +  
Sbjct: 430 TKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEY-VAN 488

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            ++ M  + G L+ + +   ++  +   S W A+++A+V  G+ E
Sbjct: 489 SLITMYAKCGNLESSTNIFNSITNKNIVS-WNAIIAANVQLGHGE 532



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 190/433 (43%), Gaps = 44/433 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+     G + N ++ T L+  Y   G  + +Q +F  +  ++V  + +L+     N   
Sbjct: 67  HALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYL 126

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EAL  +  M    V  +    AT+  L G +++   G+ +    I  G    V +ANSL
Sbjct: 127 EEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSL 186

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           ++M+   G+  +   LFD M + +  SWN                               
Sbjct: 187 ITMFGNLGRVHDAEKLFDRMEEHDTISWN------------------------------- 215

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
              AMI+ Y   G   +  ++F +M+    + P+  +L S++  C+S    S G  IH  
Sbjct: 216 ---AMISMYSHQGICSKCFLVFSDMR-HHGLRPDATTLCSLMSVCASSDHFSHGSGIHSL 271

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            +R  L+  V++ NAL++MYS  G L  A  +F + S  +D I+W++++S Y  +    +
Sbjct: 272 CLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMS-RRDLISWNTMISSYVQNCNSTD 330

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+    ++      P+ +T    L AC   G + +G ++ ++++    ++    +   ++
Sbjct: 331 ALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDG-KMVHAIVLQLSLQRNLLVGNSLI 389

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS--ASVMHGNSEMQDLAYKSLIQLEPEN 460
            M G+   ++ A    ++MP     S +  L+   A +  G   MQ  ++     ++P  
Sbjct: 390 TMYGKCNSMEDAEKVFQSMPTHDIVS-YNVLIGGYAVLEDGTKAMQVFSWMRSAGIKP-- 446

Query: 461 PSNYVSLSNLYAS 473
             NY+++ N++ S
Sbjct: 447 --NYITMINIHGS 457



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 170/385 (44%), Gaps = 45/385 (11%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA---TISKLSGEIKDLNVGMLIHG 145
           + + ++G V+      A E+   M    V    F LA   T  +  G  + +  G  IH 
Sbjct: 9   WYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHA 68

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
           L+ + G + +V +  +L+ +Y   G  S+   LF EMP+RNV SW               
Sbjct: 69  LTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSW--------------- 113

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                              TA++     NG L+EAL  + +M+ +D +  N  +  +V+ 
Sbjct: 114 -------------------TALMVALSSNGYLEEALRAYRQMR-RDGVPCNANAFATVVS 153

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C SL     G Q+    I   L + VS+ N+LI M+   G +  A ++F D     D I
Sbjct: 154 LCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLF-DRMEEHDTI 212

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W++++S Y   G   +  L+++ M   G +PD  T+  ++S C  S   + G  I++  
Sbjct: 213 SWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLC 272

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           + +      T I A +V+M   AG+L  A      M      S W  ++S+ V + NS  
Sbjct: 273 LRSSLDSSVTVINA-LVNMYSAAGKLSDAEFLFWNMSRRDLIS-WNTMISSYVQNCNSTD 330

Query: 446 QDLAYKSLIQLEPENPS-NYVSLSN 469
              A K+L QL   N S N+++ S+
Sbjct: 331 ---ALKTLGQLFHTNESPNHLTFSS 352



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 1/158 (0%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A+  SL+   Q H   +  G  S+ +V    +  Y  CG+  +   V      +  
Sbjct: 557 LSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ 616

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHG 145
             +N+LI+GY K     EA E F  M  +   PD  T   +         ++ G+   + 
Sbjct: 617 QCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNS 676

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           ++   G    +     ++ +  + G+F+E     +EMP
Sbjct: 677 MASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMP 714


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 270/485 (55%), Gaps = 38/485 (7%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T L+T YA  G    ++ +F+ I  KDV  +N++I+GYV+   + EALELF  M  +NV 
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           PD+ T+ T+   S     + +G  +H      GF  ++ + N+L+  Y KCG+      L
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGL 252

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F  +  ++V SWN+                                  +I GY       
Sbjct: 253 FLGLSYKDVISWNI----------------------------------LIGGYTHLNLYK 278

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLCN 296
           EAL+LF EM L+    PN V+++S+L  C+ L  +  G+ IH +  +  K + +  SL  
Sbjct: 279 EALLLFQEM-LRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT 337

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           +LIDMYSKCG ++ A +VF +S  +K    W++++ G+ +HG+ + A  ++++M     K
Sbjct: 338 SLIDMYSKCGDIEAAHQVF-NSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIK 396

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD IT VG+LSAC  +G+++ G  I+ S+ + Y+I P  E   C++D+LG +G    A +
Sbjct: 397 PDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEE 456

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
            I TM +EP   IW +L+ A  MHGN E+ +   ++L ++EP NP +YV LSN+YA++ R
Sbjct: 457 MISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGR 516

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRG 536
           W+ VA +R ++ D+G+KK PGCS I I    H F + DK HP +  IY ML+++ ++++ 
Sbjct: 517 WNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQE 576

Query: 537 AAASP 541
           A   P
Sbjct: 577 AGFVP 581



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 204/370 (55%), Gaps = 11/370 (2%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF +IQ  ++ ++N++  G+  +     AL+L+  M    + P+ +T   + K   ++K 
Sbjct: 19  VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKA 78

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
              G+ IHG  +K+G+ +D+ +  SL+SMYV+  +  +   +FD    R+V S+   ++G
Sbjct: 79  SKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTG 138

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +AS G    +  +R +FD++  ++V +W AMI+GYV+ G+  EAL LF EM +K  + P+
Sbjct: 139 YASRG---YIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEM-MKTNVRPD 194

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + ++V+V+   +    +  G+Q+H +        ++ + NALID YSKCG ++ A  +F 
Sbjct: 195 ESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFL 254

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
             S+ KD I+W+ ++ GY       EA+LL+ +M+  G  P+ +T++ +L AC   G I+
Sbjct: 255 GLSY-KDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAID 313

Query: 377 EGLEIYNSVINTYRIKPTTE---ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            G  I+  V    R+K  T    +   ++DM  + G ++ A     +M  +  P+ W A+
Sbjct: 314 IGRWIH--VYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPA-WNAM 370

Query: 434 VSASVMHGNS 443
           +    MHG +
Sbjct: 371 IFGFAMHGRA 380



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 138/326 (42%), Gaps = 46/326 (14%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            +T+   +  SA   S++L +Q HS I   G  SN  +   LI  Y+ CG+   +  +F 
Sbjct: 195 ESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFL 254

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            + +KDV  +N LI GY   + + EAL LF  M  S  SP+D T+ +I      +  +++
Sbjct: 255 GLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDI 314

Query: 140 GMLIHGLSIK--IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
           G  IH    K   G      L  SL+ MY KCG       +F+ M  +++ +WN      
Sbjct: 315 GRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWN------ 368

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                                       AMI G+  +G  + A  +F  M+ K+ I+P+ 
Sbjct: 369 ----------------------------AMIFGFAMHGRANAAFDIFSRMR-KNEIKPDD 399

Query: 258 VSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           ++ V +L  CS    L  G+ I     H + I  +L H       +ID+    G    A 
Sbjct: 400 ITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEH----YGCMIDLLGHSGLFKEAE 455

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHG 338
            +    +   D + W S++    +HG
Sbjct: 456 EMISTMTMEPDGVIWCSLLKACKMHG 481


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/522 (33%), Positives = 284/522 (54%), Gaps = 36/522 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L        LK  K+ H  I+      + F+ + L+  Y  C     ++ +++
Sbjct: 343 SVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYD 402

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           + +  DV + +++I+GYV N    +AL++F  +    + P+  T+A++      I  L +
Sbjct: 403 AARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPL 462

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IHG  ++  +     + ++LM MY KCG+    L+L                     
Sbjct: 463 GQEIHGYVLRNAYEGKCYVESALMDMYAKCGR----LDL--------------------- 497

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    S  +F +M  ++   W +MI+ + QNG+  EAL LF +M ++  I+ N V+
Sbjct: 498 ---------SHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEG-IKYNNVT 547

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           + S L  C+SL  +  GK+IHG  I+  +  D+   +ALIDMY+KCG+++ A RVFE   
Sbjct: 548 ISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMP 607

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            +K+ ++W+SI+S YG HG   E+V   ++M   G KPD +T + ++SAC  +GL+ EGL
Sbjct: 608 -DKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGL 666

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           +++  +   Y I P  E  AC+VD+  R+G+LD+A+ FI  MP +P   IWGAL+ A  +
Sbjct: 667 QLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRV 726

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H N E+ D+A + L +L+P N   YV +SN+ A + RWD V+++R +MKD  + K PG S
Sbjct: 727 HRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYS 786

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           W+ ++  +H F  +DK+HP S  IY  L  L+  +R     P
Sbjct: 787 WVDVNNSSHLFVASDKSHPESEDIYTSLKALLQELREEGYVP 828



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 126/424 (29%), Positives = 218/424 (51%), Gaps = 40/424 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + ++  A   ++ L +  H    + G  S+ +V + LI  Y+  G    ++  F+ +
Sbjct: 143 TLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGM 202

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D  L+N +++GY+K      A+ LF NM  S   P+  TLA    +     DL  G+
Sbjct: 203 PWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGV 262

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H L++K G   +V +AN+L+SMY KC     CL+           +W           
Sbjct: 263 QLHSLAVKCGLEQEVAVANTLLSMYAKC----RCLD----------DAW----------- 297

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                    R+F+ + R ++  W  MI+G VQNG LDEAL LF +M L+    P+ V+LV
Sbjct: 298 ---------RLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDM-LRSGARPDSVTLV 347

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+LP  + L GL  GK++HG+ IR  ++ D  L +AL+D+Y KC  +  AR ++ D++  
Sbjct: 348 SLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLY-DAARA 406

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
            D +  S+++SGY L+G   +A+ ++  ++    KP+ +T+  VL AC     +  G EI
Sbjct: 407 IDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEI 466

Query: 382 YNSVI-NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           +  V+ N Y  K   E  + ++DM  + G+LD +      M ++   + W +++S+   +
Sbjct: 467 HGYVLRNAYEGKCYVE--SALMDMYAKCGRLDLSHYIFSKMSLKDEVT-WNSMISSFSQN 523

Query: 441 GNSE 444
           G  +
Sbjct: 524 GEPQ 527



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 171/366 (46%), Gaps = 46/366 (12%)

Query: 29  VSATHRSLKLTKQSHSQILSLGHISNP---FVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           VSA H  L L  Q H++ +  G +SN     + T+L+  Y L  +   +  VF+++    
Sbjct: 43  VSAPHLPLGL--QIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAA 100

Query: 86  V---YLYNSLINGYVKNHGHNEALELFSNMYY--SNVSPDDFTLATISKLSGEIKDLNVG 140
                 +N LI G+     H+ A+  +  M+   +  SPD  TL  + K    +  +++G
Sbjct: 101 AGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLG 160

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
            L+H  +   G   DV + ++L+ MY   G   +  + FD MP R+   WNV + G    
Sbjct: 161 RLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDG---- 216

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                         Y++ GD+  A+ LF  M++    EPN  +L
Sbjct: 217 ------------------------------YIKAGDVGGAVRLFRNMRVSG-CEPNFATL 245

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
              L  C++   L  G Q+H  A++  L  +V++ N L+ MY+KC  LD A R+FE    
Sbjct: 246 ACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLP- 304

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
             D +TW+ ++SG   +G   EA+ L+  M+  G++PD +T+V +L A      + +G E
Sbjct: 305 RDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKE 364

Query: 381 IYNSVI 386
           ++  +I
Sbjct: 365 VHGYII 370



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 132/309 (42%), Gaps = 38/309 (12%)

Query: 137 LNVGMLIHGLSIKIGFVVD---VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           L +G+ IH  ++  G + +   + L   L+ MYV   +F + + +F  +P+   GS    
Sbjct: 48  LPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGS---- 103

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                                         W  +I G+   G    A++ +++M      
Sbjct: 104 ---------------------------SLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAA 136

Query: 254 -EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
             P+  +L  V+ +C++L  +S G+ +H  A    L  DV + +ALI MYS  G L  AR
Sbjct: 137 PSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDAR 196

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
             F+   + +D + W+ ++ GY   G    AV L+  M   G +P+  T+   LS C   
Sbjct: 197 DAFDGMPW-RDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAE 255

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
             +  G+++++  +    ++    +   ++ M  +   LD A    + +P +   + W  
Sbjct: 256 ADLLSGVQLHSLAVKC-GLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVT-WNG 313

Query: 433 LVSASVMHG 441
           ++S  V +G
Sbjct: 314 MISGCVQNG 322



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 14/182 (7%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            Y + T+   L   A+  ++   K+ H  I+     ++ F  + LI  YA CG    +  
Sbjct: 542 KYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALR 601

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIK 135
           VF  +  K+   +NS+I+ Y  +    E++     M      PD  T LA IS  +    
Sbjct: 602 VFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACA---- 657

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANS------LMSMYVKCGKFSECLNLFDEMP-QRNVG 188
             + G++  GL +      + ++A        ++ +Y + G+  + +    +MP + + G
Sbjct: 658 --HAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAG 715

Query: 189 SW 190
            W
Sbjct: 716 IW 717



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 9/190 (4%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKEL--NHD-VSLCNALIDMYSKCGSLDCARRVFE 316
           L+++L  C S   L  G QIH  A+      NH+ ++L   L+ MY        A  VF 
Sbjct: 35  LLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFS 94

Query: 317 --DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC--LGSKPDIITIVGVLSACGRS 372
               +    ++ W+ ++ G+   G    AVL Y KM        PD  T+  V+ +C   
Sbjct: 95  ALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAAL 154

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           G ++ G  ++ +   T  +     + + ++ M   AG L  A D    MP      +W  
Sbjct: 155 GAVSLGRLVHRTARAT-GLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDC-VLWNV 212

Query: 433 LVSASVMHGN 442
           ++   +  G+
Sbjct: 213 MMDGYIKAGD 222


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/489 (34%), Positives = 274/489 (56%), Gaps = 5/489 (1%)

Query: 58  STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV 117
           S  +I  + + G   ++  +F+ +  KD+  +++LI  + +N  + EA+  F  M+   V
Sbjct: 178 SNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGV 237

Query: 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
             D+    +       +  +N+G LIH LS+KIG    + L N+L+ MY KCG       
Sbjct: 238 MVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARK 297

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           LFDE    ++ SWN  ISG+      +LV  ++ +FD M  ++V +W++MI+GY QN   
Sbjct: 298 LFDEAYLLDLISWNSMISGYLKC---NLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLF 354

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
           DE L LF EMQ+    +P++ +LVSV+  C+ L  L  GK +H +  R  L  +V L   
Sbjct: 355 DETLALFQEMQMSG-FKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTT 413

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           LIDMY KCG ++ A  VF      K   TW++++ G  ++G    ++ +++ M      P
Sbjct: 414 LIDMYMKCGCVETALEVFY-GMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 472

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           + IT +GVL AC   GL++EG   + S+I+ ++I+P  +   C+VD+LGRAG+L  A + 
Sbjct: 473 NEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEEL 532

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
           +  MP+ P  + WGAL+ A   HG+SEM     + LI+L+P++   +V LSN+YAS  +W
Sbjct: 533 LNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKW 592

Query: 478 DAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGA 537
           D V E+R MM    + K PGCS I  +G  H F   DK HP   +I +ML ++ + ++  
Sbjct: 593 DDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLE 652

Query: 538 AASPHLGKM 546
             +P + ++
Sbjct: 653 GYTPDINEV 661



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 203/429 (47%), Gaps = 61/429 (14%)

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           ++ +FN I++ + +++N +I  Y++ +  + A  L+ +M  + +  D++T   + +    
Sbjct: 31  TRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSI 90

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
            +       +H   +K+GF  DV + N+L++ +  C   ++   +F+E    +  SWN  
Sbjct: 91  RRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSI 150

Query: 194 ISGHASSGDFS----------------------------LVVRSRRVFDQMKRRNVYAWT 225
           ++G+   G+                              LVV + ++FD+M  +++  W+
Sbjct: 151 LAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWS 210

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           A+I  + QN   +EA+  F+ M  K  +  ++V  VS L  C++L+ ++ GK IH  +++
Sbjct: 211 ALIACFQQNEMYEEAIRTFVGMH-KIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLK 269

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFE----------------------------- 316
                 ++L NALI MYSKCG +  AR++F+                             
Sbjct: 270 IGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAI 329

Query: 317 -DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            DS   KD ++WSS++SGY  +    E + L+ +M   G KPD  T+V V+SAC R   +
Sbjct: 330 FDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAAL 389

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            +G  ++ + I    +     +   ++DM  + G ++ AL+    M +E   S W AL+ 
Sbjct: 390 EQGKWVH-AYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALIL 447

Query: 436 ASVMHGNSE 444
              M+G  E
Sbjct: 448 GLAMNGLVE 456



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 12/221 (5%)

Query: 29  VSATHR--SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           +SA  R  +L+  K  H+ I   G   N  + T LI  Y  CG    +  VF  +  K +
Sbjct: 380 ISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGI 439

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM----- 141
             +N+LI G   N     +L++FSNM   +V+P++ T   +      +  ++ G      
Sbjct: 440 STWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYS 499

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASS 200
           +IH   I+     +V     ++ +  + GK  E   L + MP   +V +W   +      
Sbjct: 500 MIHDHKIQ----PNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKH 555

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           GD  +  R  R   +++  +      + N Y   G  D+ L
Sbjct: 556 GDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVL 596


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/516 (32%), Positives = 273/516 (52%), Gaps = 35/516 (6%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           ++  A+  S+++ KQ H   L  G  S  FV + L   Y+ CG    +  VF  +  KD 
Sbjct: 48  IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE 107

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             + ++I+GY K     EAL  F  M    V+ D   L +     G +K    G  +H  
Sbjct: 108 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 167

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            +K+GF  D+ + N+L  MY K G      N+F       + S                 
Sbjct: 168 VVKLGFESDIFVGNALTDMYSKAGDMESASNVF------GIDS----------------- 204

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                     + RNV ++T +I+GYV+   +++ L +F+E++ +  IEPN+ +  S++  
Sbjct: 205 ----------ECRNVVSYTCLIDGYVETEQIEKGLSVFVELR-RQGIEPNEFTFSSLIKA 253

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C++   L  G Q+H   ++   + D  + + L+DMY KCG L+ A + F++   +   I 
Sbjct: 254 CANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIG-DPTEIA 312

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+S+VS +G HG G +A+ ++ +MV  G KP+ IT + +L+ C  +GL+ EGL+ + S+ 
Sbjct: 313 WNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMD 372

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
            TY + P  E  +CV+D+LGRAG+L  A +FI  MP EP+   W + + A  +HG+ EM 
Sbjct: 373 KTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMG 432

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
            LA + L++LEP+N    V LSN+YA+ R+W+ V  +R  M+D  +KK PG SW+ +  K
Sbjct: 433 KLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYK 492

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           TH F   D +HP   +IYE LD L+  ++ A   P 
Sbjct: 493 THVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPR 528



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 107/199 (53%), Gaps = 3/199 (1%)

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M +RN+ +WTAMI+G  QN    EA+  F  M++   + P + +  S +  C+SL  +  
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEM 59

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GKQ+H  A++  +  ++ + + L DMYSKCG++  A +VFE+    KD ++W++++ GY 
Sbjct: 60  GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP-CKDEVSWTAMIDGYS 118

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
             G+  EA+L + KM+      D   +   L ACG       G  +++SV+     +   
Sbjct: 119 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK-LGFESDI 177

Query: 396 EICACVVDMLGRAGQLDRA 414
            +   + DM  +AG ++ A
Sbjct: 178 FVGNALTDMYSKAGDMESA 196



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 14/237 (5%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    ++  A   +L+   Q H+Q++ +    +PFVS+ L+  Y  CG   Q+   F+ I
Sbjct: 246 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEI 305

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
                  +NSL++ + ++    +A+++F  M    V P+  T   IS L+G     + G+
Sbjct: 306 GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF--ISLLTG---CSHAGL 360

Query: 142 LIHGLSI------KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRI 194
           +  GL          G V      + ++ +  + G+  E     + MP + N   W   +
Sbjct: 361 VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 420

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                 GD  +   +     +++ +N  A   + N Y      ++  V  + M+++D
Sbjct: 421 GACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWED--VRSVRMRMRD 475


>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 500

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/491 (34%), Positives = 280/491 (57%), Gaps = 8/491 (1%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT--QSQLVFNSIQHKDVYLYNSLI 93
           ++  K+ H+ +++ G         KLIT Y      +   ++L+F++I H   YLYN++ 
Sbjct: 1   MQEAKRLHAHLITSGLHQQENHLRKLITLYTSSSSSSLHHARLLFDAIHHPSTYLYNTMF 60

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
             Y  +     AL L  +M      PD +T   + K    +  L  G  +H  ++K G  
Sbjct: 61  RVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQELHCQALKFGLG 120

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
             V + NSL+ +Y           +FD M  R++ SW   ++ +A+S     V  +R+VF
Sbjct: 121 GHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCS---VKAARKVF 177

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D+M  R+V +++AMI  YV+     EAL LF E+    +IEP+   ++SVL  C++L  L
Sbjct: 178 DEMPERSVISYSAMIAAYVRGNRFREALDLFREL-FSVKIEPSDSCVMSVLCACANLGAL 236

Query: 274 SGGKQIHGFAIRKELNH-DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
             G+ ++ +  + + ++ D  +  ALIDM+ KCGS++ A  VFE +   K    W++++S
Sbjct: 237 DVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAK-EKHVGEWTAMLS 295

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           G  +HG G + +  + KMV  G KP+ +T V +LS C  SGL+NEGL  ++ + + + ++
Sbjct: 296 GLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVE 355

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           PT E   CVVD+LGRAG +D+A+  I  MP EP+ +IWG+L++A  ++ N E+ +LA + 
Sbjct: 356 PTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSLLNACRVYKNVEIGELAAQW 415

Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           LI+ EP N + Y++L +LY  + RWD V +++  MK+ G +K PGCS I + G  + F V
Sbjct: 416 LIKDEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEVGGICYEFVV 475

Query: 513 ADKAHPCSVSI 523
            DK+HPC+V I
Sbjct: 476 GDKSHPCAVEI 486


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 169/517 (32%), Positives = 286/517 (55%), Gaps = 36/517 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T  + L+  A   S++L K  H   +      +  V+T +++ Y+       ++ +F+
Sbjct: 111 SFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFD 170

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  KD  ++N +I  Y +     E LELF +M  S +  D FT   +     ++K ++ 
Sbjct: 171 KMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDW 230

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G   H   ++ G    V + NSL+ MY +C                              
Sbjct: 231 GKQTHAHILRNGSDSQVSVHNSLIDMYCEC------------------------------ 260

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                ++  + ++F+ M  ++V +W+AMI GYV+NG    AL LF +M+  D I+ + V 
Sbjct: 261 ----KILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMK-SDGIQADFVI 315

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           ++++LP    +  L   K +HG++++  L    SL  AL+  Y+KCGS++ A+R+FE+  
Sbjct: 316 MINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEK 375

Query: 320 FN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
            + KD I W+S++S +  HG   +   LYN+M C  SKPD +T +G+L+AC  SGL+ +G
Sbjct: 376 IDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKG 435

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
            E +  +  +Y  +P+ E  AC+V++LGRAG +  A + +K MP++P   +WG L+SA  
Sbjct: 436 KEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACK 495

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           MH  S++ + A + LI +EP N  NY+ LSN+YA++ +WD VA++R+ ++++GLKK PGC
Sbjct: 496 MHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGC 555

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           SW+ I+G    F VAD+ HP +  IY +L +L L ++
Sbjct: 556 SWLEINGHVTEFRVADQTHPRAGDIYTILGNLELEIK 592



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 180/422 (42%), Gaps = 38/422 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  ++  ++   +  H  ++ LG      V+T L   Y  C +   +  +F+  
Sbjct: 12  TYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDKR 71

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD+   +SL     +N        +F  M    + PD FT   + +    +  + +  
Sbjct: 72  SVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAK 131

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           ++H ++I      D+++  +++S+Y K     +   LFD+MP+++   WN+         
Sbjct: 132 IVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNI--------- 182

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                    MI  Y + G   E L LF  M  +  I  +  + +
Sbjct: 183 -------------------------MIAAYAREGKPTECLELFKSMA-RSGIRSDLFTAL 216

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
            V+ + + L  +  GKQ H   +R   +  VS+ N+LIDMY +C  LD A ++F   + +
Sbjct: 217 PVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMT-D 275

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K  I+WS+++ GY  +G+   A+ L++KM   G + D + ++ +L A    G + E ++ 
Sbjct: 276 KSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGAL-ENVKY 334

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMH 440
            +       +     +   ++    + G ++ A    +   ++    I W +++SA   H
Sbjct: 335 LHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANH 394

Query: 441 GN 442
           G+
Sbjct: 395 GD 396



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 142/332 (42%), Gaps = 38/332 (11%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M   ++ PD+ T   + +      ++  G  IHG  +K+GF +  ++A +L  MY +C +
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIE 60

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
           F     LFD+   +++G W   ++      D    +   RVF +M               
Sbjct: 61  FENAHQLFDKRSVKDLG-WPSSLTTEGPQNDNGEGIF--RVFGRM--------------- 102

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
                            + +++ P+  +  ++L   + L  +   K +H  AI  +L+ D
Sbjct: 103 -----------------IAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGD 145

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           + +  A++ +YSK  SL  AR++F D    KD + W+ +++ Y   GK  E + L+  M 
Sbjct: 146 LLVNTAVLSLYSKLRSLVDARKLF-DKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMA 204

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G + D+ T + V+S+  +   ++ G + +  ++          +   ++DM      L
Sbjct: 205 RSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGS-DSQVSVHNSLIDMYCECKIL 263

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           D A      M  + S   W A++   V +G S
Sbjct: 264 DSACKIFNWM-TDKSVISWSAMIKGYVKNGQS 294


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 180/508 (35%), Positives = 284/508 (55%), Gaps = 38/508 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLIT-AYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           LK  +Q H++I+  G      + TKL++ AYA     + ++ +F SI   D +L++SLI 
Sbjct: 32  LKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLIT 91

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
              K     E+L  +  M  +N+S  ++T + + K S ++   ++G  IH      G+ +
Sbjct: 92  LTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGL 151

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D  +  +L+S Y K                          SGH        V+ +R+VFD
Sbjct: 152 DAYVQAALVSFYAK--------------------------SGH--------VMIARKVFD 177

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  + V AW +MI+GY QNG   EA+ LF  MQ    ++P+  + VS+L  C+ +  + 
Sbjct: 178 KMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQ-DLGVKPDSSTFVSLLSACAQVGAIG 236

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G  +H +  R   + +V L  AL++MYS+CG++  AR VF DS   K+ + W++++SGY
Sbjct: 237 LGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVF-DSMEEKNIVAWTAMISGY 295

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           G+HG G +A+ L+N+M   G +P+ +T V VLSAC  +GL++EG +I+ ++   Y + P+
Sbjct: 296 GMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPS 355

Query: 395 TEICACVVDMLGRAGQLDRALDFIK-TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
            E   C+VDMLGRAG L+ A  FIK T P EP+P++W A++ A  MH N ++     + L
Sbjct: 356 VEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHL 415

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           + +EPENP +YV LSN+YA + R D V ++R +M    LKK  G S I +  K + FS+ 
Sbjct: 416 LSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMG 475

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASP 541
           DK+HP +  IY  LD+L+   R A   P
Sbjct: 476 DKSHPKTNQIYLYLDELMSRCREAGYIP 503



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 158/342 (46%), Gaps = 48/342 (14%)

Query: 2   ILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
           +L   R   A ++S NYT + V   ++ SA   +  + +  H  +   G+  + +V   L
Sbjct: 103 LLCYRRMLLANISSSNYTFSAV---IKSSADLTAFSIGETIHCHVYICGYGLDAYVQAAL 159

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           ++ YA  G    ++ VF+ +  K V  +NS+I+GY +N    EA+ELF  M    V PD 
Sbjct: 160 VSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDS 219

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T  ++     ++  + +G  +H    +  F ++V+L  +LM+MY +CG  S+   +FD 
Sbjct: 220 STFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDS 279

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           M ++N+ +W                                  TAMI+GY  +G   +A+
Sbjct: 280 MEEKNIVAW----------------------------------TAMISGYGMHGHGSQAI 305

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCN 296
            LF EM   D   PN V+ V+VL  C+    +  G+QI       + +   + H V    
Sbjct: 306 ELFNEMSF-DGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQV---- 360

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDA-ITWSSIVSGYGLH 337
            ++DM  + G L+ A +  +++S  + A   W++++    +H
Sbjct: 361 CMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMH 402


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 166/478 (34%), Positives = 268/478 (56%), Gaps = 5/478 (1%)

Query: 22   TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
            T    L+  A   +L   +Q H+ I  LG +S+ FVS  LI  YA CG    ++ VF+ +
Sbjct: 554  TFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEM 613

Query: 82   QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
              KDV  +NSLI GY + +   + L LF  M    V  D  T+  +      + D ++  
Sbjct: 614  VVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMAD 673

Query: 142  LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
             +          VDV L N+L+  + + G+      +F  M  RN+ + N  I+ +A   
Sbjct: 674  YMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQ 733

Query: 202  DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
            D   +V +R++FDQ+ ++++ +W++MI+GY Q     +AL +F +MQ + +++P+ + + 
Sbjct: 734  D---IVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQ-RAKVKPDAIVIA 789

Query: 262  SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
            SV+ +C+ L  L  GK +H +  R  +  D  + N+LIDMY KCGS   A +VF++    
Sbjct: 790  SVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMK-E 848

Query: 322  KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
            KD ++W+SI+ G   +G   E++ L+  M+  G +P+ +T +GVL AC  + L+ EGL+ 
Sbjct: 849  KDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDH 908

Query: 382  YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
            + S+   Y ++P  +   CVVD+LGRAGQL++AL FI  MP++P P +W  L+ +   HG
Sbjct: 909  FESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHG 968

Query: 442  NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
            +  + ++  K L +LEP N  NY  LSN YAS+ RW     +R  M D  ++KSPGCS
Sbjct: 969  DVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCS 1026



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/423 (31%), Positives = 237/423 (56%), Gaps = 5/423 (1%)

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            SQL+ + +  +    +++L+  Y       +AL+LF +  + + + D +      K   
Sbjct: 42  HSQLIAHQVFDRRPTPWHALLKAYSHGPHPQDALQLFRHARW-HAADDTYAFTFALKACA 100

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +      M +HGL ++ GF     +  +L+++Y+ CG  ++    F+EMP +N  SWNV
Sbjct: 101 GLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNV 160

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            I+G A  G+   V  +R +F++M  RNV +W+ MI+GY +     EA+ LF  M + + 
Sbjct: 161 VITGFAGWGE---VEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRM-MAEG 216

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           I P+++++++V+P  S++  +  G+ +HG+  ++ L  DV + N+LID+Y+K GS+  + 
Sbjct: 217 ISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSL 276

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           RVF++    ++ ++W+SI+SG+ +HG   +AV L+  M   G +P+ IT + VL AC   
Sbjct: 277 RVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHG 336

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           GL+ +G+  + S+I  Y I P  +   C++DMLGRAG+L  A   I+  PVE + ++W  
Sbjct: 337 GLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRT 396

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
           L+     +G  EM +   K ++ LE E   ++V LSN+    RR+     +R ++  R  
Sbjct: 397 LLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNS 456

Query: 493 KKS 495
            KS
Sbjct: 457 VKS 459



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 194/464 (41%), Gaps = 78/464 (16%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
            S A     LV  RN    +V+ F  +      ++  K+ H+  +  G  +  +  +K++
Sbjct: 441 FSDAEIVRKLVDQRN----SVKSFFNIV----RMEAIKRLHAYYIVSGLYNCHYAMSKVL 492

Query: 63  TAYALCGQP--TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
            +YA+  QP    +  VF+ I+    +L+N LI G  ++    +A+  +       + PD
Sbjct: 493 RSYAIL-QPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPD 551

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
           + T   I K    I  LN G  +H    K+G + D+ ++NSL+ +Y  CG      ++FD
Sbjct: 552 NLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFD 611

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           EM  ++V SWN                                  ++I GY Q     + 
Sbjct: 612 EMVVKDVVSWN----------------------------------SLICGYSQCNRFKDI 637

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF  MQ  + ++ +KV+++ V+  C+ L   S    +  +     +  DV L N L+D
Sbjct: 638 LALFKLMQ-NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVD 696

Query: 301 MYSKCGSLDCARRVF------------------------------EDSSFNKDAITWSSI 330
            + + G L  A +VF                               D    KD I+WSS+
Sbjct: 697 YFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSM 756

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           +SGY       +A+ ++ +M     KPD I I  V+S+C   G ++ G  ++  V     
Sbjct: 757 ISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRN-N 815

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           IK  T +   ++DM  + G    AL   K M  + + S W +++
Sbjct: 816 IKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLS-WNSII 858



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 125/285 (43%), Gaps = 50/285 (17%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +IT +A  G+   ++L+F  +  ++V  ++ +I+GY +     EA+ LF  M    +SP 
Sbjct: 161 VITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPS 220

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
           + T+  +      +  + +G  +HG   K G V DV + NSL+ +Y K G     L +FD
Sbjct: 221 EITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFD 280

Query: 181 EM-PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           EM  +RN+ SW   ISG A  G   L V++  +F  M+R                     
Sbjct: 281 EMLDRRNLVSWTSIISGFAMHG---LSVKAVELFADMRRAG------------------- 318

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL------NHDVS 293
                        I PN+++ +SVL  CS      GG    G A  K +      N DV 
Sbjct: 319 -------------IRPNRITFLSVLHACS-----HGGLVEQGVAFFKSMIYEYNINPDVK 360

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV---SGYG 335
               +IDM  + G L  A ++  D     +A  W +++   S YG
Sbjct: 361 HFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYG 405



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 144/288 (50%), Gaps = 12/288 (4%)

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           +V + +VFDQ++    + W  +I G  Q+    +A+  + + Q    + P+ ++   +L 
Sbjct: 502 LVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMV-PDNLTFPFILK 560

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C+ +  L+ G+Q+H    +  L  D+ + N+LI +Y+ CG+L  AR VF D    KD +
Sbjct: 561 ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVF-DEMVVKDVV 619

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W+S++ GY    +  + + L+  M   G K D +T++ V+SAC R G  +   +     
Sbjct: 620 SWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMA-DYMVRY 678

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           I  Y I+    +   +VD  GR GQL  A      M V    ++  A+++A      ++ 
Sbjct: 679 IEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTM-NAMIAAY-----AKG 732

Query: 446 QDL--AYKSLIQLEPENPSNYVSLSNLYASSRRW-DAVAELRTMMKDR 490
           QD+  A K   Q+  ++  ++ S+ + Y+ +  + DA+   R M + +
Sbjct: 733 QDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAK 780


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/489 (34%), Positives = 274/489 (56%), Gaps = 5/489 (1%)

Query: 58  STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV 117
           S  +I  + + G   ++  +F+ +  KD+  +++LI  + +N  + EA+  F  M+   V
Sbjct: 313 SNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGV 372

Query: 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
             D+    +       +  +N+G LIH LS+KIG    + L N+L+ MY KCG       
Sbjct: 373 MVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARK 432

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           LFDE    ++ SWN  ISG+      +LV  ++ +FD M  ++V +W++MI+GY QN   
Sbjct: 433 LFDEAYLLDLISWNSMISGYLKC---NLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLF 489

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
           DE L LF EMQ+    +P++ +LVSV+  C+ L  L  GK +H +  R  L  +V L   
Sbjct: 490 DETLALFQEMQMSG-FKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTT 548

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           LIDMY KCG ++ A  VF      K   TW++++ G  ++G    ++ +++ M      P
Sbjct: 549 LIDMYMKCGCVETALEVFY-GMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 607

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           + IT +GVL AC   GL++EG   + S+I+ ++I+P  +   C+VD+LGRAG+L  A + 
Sbjct: 608 NEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEEL 667

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
           +  MP+ P  + WGAL+ A   HG+SEM     + LI+L+P++   +V LSN+YAS  +W
Sbjct: 668 LNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKW 727

Query: 478 DAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGA 537
           D V E+R MM    + K PGCS I  +G  H F   DK HP   +I +ML ++ + ++  
Sbjct: 728 DDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLE 787

Query: 538 AASPHLGKM 546
             +P + ++
Sbjct: 788 GYTPDINEV 796



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 12/221 (5%)

Query: 29  VSATHR--SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           +SA  R  +L+  K  H+ I   G   N  + T LI  Y  CG    +  VF  +  K +
Sbjct: 515 ISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGI 574

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM----- 141
             +N+LI G   N     +L++FSNM   +V+P++ T   +      +  ++ G      
Sbjct: 575 STWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYS 634

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASS 200
           +IH   I+     +V     ++ +  + GK  E   L + MP   +V +W   +      
Sbjct: 635 MIHDHKIQ----PNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKH 690

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           GD  +  R  R   +++  +      + N Y   G  D+ L
Sbjct: 691 GDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVL 731


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 176/518 (33%), Positives = 284/518 (54%), Gaps = 15/518 (2%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
           AL+   N  S T    L+   T ++L+  +  H +IL LG  S+ FV   L+  YA C +
Sbjct: 67  ALMVEAN--SFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSE 124

Query: 71  PTQSQL-VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK 129
              S   VF  +  +DV  +NS+I+ Y+       A+ L   M   N+   +  +  +SK
Sbjct: 125 NLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSK 184

Query: 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189
            +G ++      L H +  ++    +V   NS++S YV+ G      ++F +MP++ V S
Sbjct: 185 -AGNME------LAHSVFEQMPLRNEVSW-NSMISGYVRIGDVRAAQSIFYQMPEKTVVS 236

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
           W   ISG+A++GD      +  +F+ M  +NV +W AMI+GYV N + D+AL +F  M +
Sbjct: 237 WTAMISGYATNGDLK---SAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLI 293

Query: 250 KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
                P++ +L+S+L  C+ L  L  GK I+ +  + +L+  + L NALIDM++KCG ++
Sbjct: 294 NGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVE 353

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            A+ VF   S  +  ITW+++VSG  ++GK  EA+ L++KM   G+KPD +  + VLSAC
Sbjct: 354 NAKEVFHHMS-KRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSAC 412

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
              GL+ EG  +++ ++  + IKP  E   C+VD+LGRAG+L+ A+ F   M ++P+  I
Sbjct: 413 THGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVI 472

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489
           W  L+    +HGN ++     + ++  EP NPS    +SNL AS  RW+ V   R  M+ 
Sbjct: 473 WATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQ 532

Query: 490 RGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           + ++K PGCS I +  + H F   D  H     IY  L
Sbjct: 533 QRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRAL 570


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 251/442 (56%), Gaps = 37/442 (8%)

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L +G  IH  + ++G   +V +A+S +SMY +CG+  +   +F+EM  R+V SWN  ISG
Sbjct: 28  LVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISG 87

Query: 197 HASSGDFSLVVRSRR-----------------------------------VFDQMKRRNV 221
            A +G F   +   R                                   VFD+M+ + +
Sbjct: 88  FAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGL 147

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            +W AM+  Y  N    EA+ LF+ MQ KD IEP+ V+L +VLP+C  +  LS GK+IH 
Sbjct: 148 ISWNAMLAVYTNNEMHVEAVELFMRMQ-KDGIEPDAVTLATVLPSCGEVSALSLGKRIHE 206

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
              R+ +   + L NAL+DMY+ CG L  AR VF DS   +D ++W+SI+S YG HG G 
Sbjct: 207 VIKRRRMCSSMLLENALMDMYANCGCLKEARDVF-DSMGTRDVVSWTSIISAYGRHGHGR 265

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           EA+ L+ KM   G +PD I  V +L+AC  +GL++ G   + S+ + + I P  E  AC+
Sbjct: 266 EAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACM 325

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           VD+LGRAG +  A DFI  MP++P+  +WGAL+ A  +H N ++  LA  SL++L P+  
Sbjct: 326 VDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQT 385

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
             YV LSN+YA + RW  V+ +R++M+ +G+KK PG S   +  + H F + D +HP S 
Sbjct: 386 GYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSK 445

Query: 522 SIYEMLDDLILIMRGAAASPHL 543
            IY+ L +L+  +R    +P +
Sbjct: 446 MIYKKLSELLRRIREMGYNPEV 467



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 121/285 (42%), Gaps = 44/285 (15%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ ++ K +  +N+++  Y  N  H EA+ELF  M    + PD  TLAT+    GE+  
Sbjct: 138 VFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSA 197

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L++G  IH +  +      ++L N+LM MY  CG   E  ++FD M  R+V SW      
Sbjct: 198 LSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSW------ 251

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                       T++I+ Y ++G   EA+ LF +M     +EP+
Sbjct: 252 ----------------------------TSIISAYGRHGHGREAIDLFEKM-CGQGLEPD 282

Query: 257 KVSLVSVLPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            ++ V++L  CS    L  GK         F I  +L H       ++D+  + G +  A
Sbjct: 283 SIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYA----CMVDLLGRAGCIREA 338

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
                      +   W +++    +H      +L  + ++ L  K
Sbjct: 339 YDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPK 383



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 77/139 (55%), Gaps = 4/139 (2%)

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P  + L     +C++  GL  G+QIH    R  L+ +V + ++ I MY++CG  D A ++
Sbjct: 10  PGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQM 69

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLSACGRSG 373
           FE+  + +D ++W++++SG+   G    A+ ++ ++V L   KPD  T+  +L + G++ 
Sbjct: 70  FEEMQY-RDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKAR 128

Query: 374 LINEGLEIYNSVINTYRIK 392
           +  E + +   V +  R K
Sbjct: 129 V--EDIALLKGVFDEMRFK 145



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L L K+ H  I      S+  +   L+  YA CG   +++ VF+S+  +DV  + S+I+
Sbjct: 197 ALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIIS 256

Query: 95  GYVKNHGH-NEALELFSNMYYSNVSPDDFTLATI 127
            Y + HGH  EA++LF  M    + PD      I
Sbjct: 257 AYGR-HGHGREAIDLFEKMCGQGLEPDSIAFVAI 289


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 175/554 (31%), Positives = 296/554 (53%), Gaps = 50/554 (9%)

Query: 1   MILSSARN-----TFALVTSRNYTSATVQHFLQVS-----ATHRSLKLTKQSHSQILSLG 50
           MI S +RN        L+   N+          VS     A   ++++ K  H+ ++   
Sbjct: 166 MIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNS 225

Query: 51  ---HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
              H+  P  +T L+  YA CG    ++ +FN +  K V  + ++I G ++++   E  +
Sbjct: 226 NNEHMGVP-TTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTK 284

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
           LF  M   N+ P++ T+ ++    G    L +G  +H   ++ GF V + LA +L+ MY 
Sbjct: 285 LFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYG 344

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           KC                                  S +  +R +FD  + R+V  WTAM
Sbjct: 345 KC----------------------------------SDIRNARALFDSTQNRDVMIWTAM 370

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           ++ Y Q   +D+A  LF +M+    + P KV++VS+L  C+    L  GK +H +  ++ 
Sbjct: 371 LSAYAQANCIDQAFNLFDQMRTSG-VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKER 429

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
           +  D  L  AL+DMY+KCG ++ A R+F ++  ++D   W++I++G+ +HG G EA+ ++
Sbjct: 430 VEVDCILNTALVDMYAKCGDINAAGRLFIEA-ISRDICMWNAIITGFAMHGYGEEALDIF 488

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            +M   G KP+ IT +G+L AC  +GL+ EG +++  +++T+ + P  E   C+VD+LGR
Sbjct: 489 AEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGR 548

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           AG LD A + IK+MP++P+  +WGALV+A  +H N ++ +LA   L+++EPEN    V +
Sbjct: 549 AGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLM 608

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           SN+YA++ RW   A +R  MK  G+KK PG S I ++G  H F + D++HP    I EML
Sbjct: 609 SNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEML 668

Query: 528 DDLILIMRGAAASP 541
            ++   +  A   P
Sbjct: 669 AEMRRKLNEAGYVP 682



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 193/424 (45%), Gaps = 76/424 (17%)

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
           +F   ++ K  G++    +G  IHG  +K G   DV + N+LM MY +C        +FD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----------NVYA------- 223
           +M +R+V SW+  I   + + +F + +   R  + M+ R          N++A       
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 224 ---------------------WTAMINGYVQNGDLDEALVLF------------------ 244
                                 TA+++ Y + G L  A  LF                  
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 245 -------------LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
                        + MQ ++ I PN+++++S++  C     L  GKQ+H + +R   +  
Sbjct: 274 IRSNRLEEGTKLFIRMQ-EENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVS 332

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           ++L  AL+DMY KC  +  AR +F DS+ N+D + W++++S Y       +A  L+++M 
Sbjct: 333 LALATALVDMYGKCSDIRNARALF-DSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMR 391

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G +P  +TIV +LS C  +G ++ G  ++ S I+  R++    +   +VDM  + G +
Sbjct: 392 TSGVRPTKVTIVSLLSLCAVAGALDLGKWVH-SYIDKERVEVDCILNTALVDMYAKCGDI 450

Query: 412 DRALD-FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           + A   FI+   +     +W A+++   MHG  E + L   + ++ +   P++   +  L
Sbjct: 451 NAAGRLFIEA--ISRDICMWNAIITGFAMHGYGE-EALDIFAEMERQGVKPNDITFIGLL 507

Query: 471 YASS 474
           +A S
Sbjct: 508 HACS 511


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 169/509 (33%), Positives = 284/509 (55%), Gaps = 40/509 (7%)

Query: 31  ATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYN 90
           A+  +L+   Q H+  +     ++ +V+  LI  YA C   T+++ VF+     DV L+N
Sbjct: 361 ASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFN 420

Query: 91  SLINGYVK---NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
           ++I GY +       ++AL +F +M +  + P   T  ++ + S  +  L +   IHGL 
Sbjct: 421 AMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLM 480

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
            K G  +D+   ++L+++Y  C     CL                               
Sbjct: 481 FKFGLNLDIFAGSALIAVYSNC----YCLK------------------------------ 506

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            SR VFD+MK +++  W +M +GYVQ  + +EAL LFLE+QL  R  P++ + V ++   
Sbjct: 507 DSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQL-SRDRPDEFTFVDMVTAA 565

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
            +L  L  G++ H   +++ L  +  + NAL+DMY+KCGS + A + F DS+ ++D + W
Sbjct: 566 GNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAF-DSAASRDVVCW 624

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +S++S Y  HG+G +A+ +  KM+C G +P+ IT VGVLSAC  +GL+ +GL+ +  ++ 
Sbjct: 625 NSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR 684

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            + I+P TE   C+V +LGRAG+L+ A + I+ MP +P+  +W +L+S     GN E+ +
Sbjct: 685 -FGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAE 743

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A +  I  +P++  ++  LSN+YAS   W    ++R  MK  G+ K PG SWI I+ + 
Sbjct: 744 YAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIEINKEV 803

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRG 536
           H F   DK+H  +  IYE+LDDL++ +RG
Sbjct: 804 HIFLSKDKSHCKANQIYEVLDDLLVQIRG 832



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 205/436 (47%), Gaps = 53/436 (12%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H+ IL  GH  +  +   LI +Y  CG+   +  +F+ + +K++  + +L++GY +N
Sbjct: 269 KQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQN 328

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
             H EA+ELF++M    + PD F  ++I      +  L  G  +H  +IK     D  + 
Sbjct: 329 SLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVT 388

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           NSL+ MY KC    +CL                                +R+VFD     
Sbjct: 389 NSLIDMYAKC----DCLT------------------------------EARKVFDIFAAD 414

Query: 220 NVYAWTAMINGYVQNG---DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           +V  + AMI GY + G   +L +AL +F +M+ +  I P+ ++ VS+L   +SL  L   
Sbjct: 415 DVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFR-LIRPSLLTFVSLLRASASLTSLGLS 473

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           KQIHG   +  LN D+   +ALI +YS C  L  +R VF++    KD + W+S+ SGY  
Sbjct: 474 KQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKV-KDLVIWNSMFSGYVQ 532

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
             +  EA+ L+ ++     +PD  T V +++A G    +  G E +  ++    ++    
Sbjct: 533 QSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKR-GLECNPY 591

Query: 397 ICACVVDMLGRAGQLD---RALDFIKTMPVEPSPSIWGALVSASVMHGNSE--MQDLAYK 451
           I   ++DM  + G  +   +A D   +  V      W +++S+   HG     +Q L   
Sbjct: 592 ITNALLDMYAKCGSPEDAHKAFDSAASRDV----VCWNSVISSYANHGEGRKALQMLEKM 647

Query: 452 SLIQLEPENPSNYVSL 467
               +EP    NY++ 
Sbjct: 648 MCEGIEP----NYITF 659



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 155/316 (49%), Gaps = 39/316 (12%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           +V T LI  Y   G    ++LVF+++  K    + ++I+G VK      +L+LF  +   
Sbjct: 184 YVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEG 243

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
           NV PD + L+T+      +  L  G  IH   ++ G   D  L N L+  YVKCG+    
Sbjct: 244 NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGR---- 299

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
                                         V  + ++FD M  +N+ +WT +++GY QN 
Sbjct: 300 ------------------------------VRAAHKLFDGMPNKNIISWTTLLSGYKQNS 329

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
              EA+ LF  M  K  ++P+  +  S+L +C+SL  L  G Q+H + I+  L +D  + 
Sbjct: 330 LHKEAMELFTSMP-KFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVT 388

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY---GLHGKGHEAVLLYNKMVC 352
           N+LIDMY+KC  L  AR+VF D     D + +++++ GY   G   + H+A+ +++ M  
Sbjct: 389 NSLIDMYAKCDCLTEARKVF-DIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRF 447

Query: 353 LGSKPDIITIVGVLSA 368
              +P ++T V +L A
Sbjct: 448 RLIRPSLLTFVSLLRA 463



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 143/316 (45%), Gaps = 43/316 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+ SA+  SL L+KQ H  +   G   + F  + LI  Y+ C     S+LVF+ +
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEM 515

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KD+ ++NS+ +GYV+   + EAL LF  +  S   PD+FT   +   +G +  L +G 
Sbjct: 516 KVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQ 575

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
             H   +K G   +  + N+L+ MY KCG   +    FD    R+V  WN  IS +A+ G
Sbjct: 576 EFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHG 635

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           +       R+   QM                            LE  + + IEPN ++ V
Sbjct: 636 E------GRKAL-QM----------------------------LEKMMCEGIEPNYITFV 660

Query: 262 SVLPTCS--SLI--GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            VL  CS   L+  GL   + +  F I  E  H V     ++ +  + G L+ AR + E 
Sbjct: 661 GVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYV----CMVSLLGRAGRLNEARELIEK 716

Query: 318 SSFNKDAITWSSIVSG 333
                 AI W S++SG
Sbjct: 717 MPTKPAAIVWRSLLSG 732



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 178/393 (45%), Gaps = 42/393 (10%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
            LQ+ A    L      H QI+  G   + ++S  L+  Y+  G    ++ VF  +  ++
Sbjct: 50  LLQLRALDDPLLYHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERN 109

Query: 86  VYLYNSLINGYVKNHG-HNEALELFSNMYYSNV-SPDDFTLATISKLSGEIKDLNVGML- 142
           +  ++++++    +HG + E+L +F + + +   SP+++ L++  +    +      M+ 
Sbjct: 110 LVTWSTMVSA-CNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVF 168

Query: 143 -IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +    +K  F  DV +   L+  Y+K G       +FD +P+++  +W           
Sbjct: 169 QLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTW----------- 217

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  T MI+G V+ G    +L LF ++ ++  + P+   L 
Sbjct: 218 -----------------------TTMISGCVKMGRSYVSLQLFYQL-MEGNVVPDGYILS 253

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           +VL  CS L  L GGKQIH   +R     D SL N LID Y KCG +  A ++F D   N
Sbjct: 254 TVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLF-DGMPN 312

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K+ I+W++++SGY  +    EA+ L+  M   G KPD+     +L++C     +  G ++
Sbjct: 313 KNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQV 372

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
           +   I    +   + +   ++DM  +   L  A
Sbjct: 373 HAYTIKA-NLGNDSYVTNSLIDMYAKCDCLTEA 404



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 138/299 (46%), Gaps = 43/299 (14%)

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           ++HG  I  G  +D  L+N LM++Y + G                               
Sbjct: 65  VVHGQIIVSGLELDTYLSNILMNLYSRAGG------------------------------ 94

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
               +V +R+VF++M  RN+  W+ M++    +G  +E+LV+FL+     +  PN+  L 
Sbjct: 95  ----MVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILS 150

Query: 262 SVLPTCSSLIGLSGGK----QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           S +  CS L G   G+    Q+  F ++   + DV +   LID Y K G++D AR VF D
Sbjct: 151 SFIQACSGLDG--SGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVF-D 207

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
           +   K  +TW++++SG    G+ + ++ L+ +++     PD   +  VLSAC     +  
Sbjct: 208 ALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEG 267

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           G +I+  ++  Y  +    +   ++D   + G++  A      MP +   S W  L+S 
Sbjct: 268 GKQIHAHILR-YGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIIS-WTTLLSG 324



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 8/169 (4%)

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HG  I   L  D  L N L+++YS+ G +  AR+VFE     ++ +TWS++VS    HG
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMP-ERNLVTWSTMVSACNHHG 124

Query: 339 KGHEAVLLY-NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI---YNSVINTYRIKPT 394
              E+++++ +      + P+   +   + AC  SGL   G  +     S +   R    
Sbjct: 125 FYEESLVVFLDFWRTRKNSPNEYILSSFIQAC--SGLDGSGRWMVFQLQSFLVKSRFDRD 182

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
             +   ++D   + G +D A      +P E S   W  ++S  V  G S
Sbjct: 183 VYVGTLLIDFYLKEGNIDYARLVFDALP-EKSTVTWTTMISGCVKMGRS 230


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/486 (34%), Positives = 279/486 (57%), Gaps = 6/486 (1%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N F+S + I A    G  + +  +F++  H D+ LYN+ I    K      A+ L++ + 
Sbjct: 56  NLFLS-QFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIR 114

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
              + PD +++ ++ K   ++  + VG  IH  ++     +DV +A SL+ MY  CG  S
Sbjct: 115 IDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVS 174

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
           +   LFD +  ++V  WN  ++G+   G+      +R+VF++M +RNV +WT +I GY Q
Sbjct: 175 DARKLFDFVGFKDVALWNAMVAGYVKVGELK---SARKVFNEMPQRNVISWTTLIAGYAQ 231

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
                EA+ LF +MQL++ +EP+++++++VL  C+ L  L  G+ IH +  +  L   VS
Sbjct: 232 TNRPHEAIELFRKMQLEE-VEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVS 290

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L NALIDMY+K G++  A  VFE+    K  ITWS++++   LHG G EA+ ++ +M   
Sbjct: 291 LYNALIDMYAKSGNIRRALEVFENMK-QKSVITWSTVIAALALHGLGGEAIDMFLRMEKA 349

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
             +P+ +T V +LSAC   G+++ G   ++ + + Y+I+P  E   C++D+L RAG L  
Sbjct: 350 KVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQE 409

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A   +  MP E +  IWG+L++AS  H ++E+  LA K L +LEP N  NYV LSN YA+
Sbjct: 410 AQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAA 469

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
             +W+    +R +M++ G+KK+PG S I I+   + F   D +      IY +L  +IL 
Sbjct: 470 LGKWNESGTVRKLMRNAGVKKAPGGSVIEINNIVYEFLAGDMSDSQVHEIYHVLCKIILQ 529

Query: 534 MRGAAA 539
           ++ A +
Sbjct: 530 LKMAGS 535



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 162/376 (43%), Gaps = 79/376 (21%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           ++++ +Q H+Q +S     +  V+T LI  Y+ CG  + ++ +F+ +  KDV L+N+++ 
Sbjct: 137 AVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVA 196

Query: 95  GYVK--------------------------------NHGHNEALELFSNMYYSNVSPDDF 122
           GYVK                                N  H EA+ELF  M    V PD+ 
Sbjct: 197 GYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPH-EAIELFRKMQLEEVEPDEI 255

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
            +  +     ++  L +G  IH    K G    V L N+L+ MY K G     L +F+ M
Sbjct: 256 AMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENM 315

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
            Q++V +W+  I+  A  G                          + G        EA+ 
Sbjct: 316 KQKSVITWSTVIAALALHG--------------------------LGG--------EAID 341

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK----QIHG-FAIRKELNHDVSLCNA 297
           +FL M+ K ++ PN+V+ V++L  CS +  +  G+    Q+   + I  ++ H       
Sbjct: 342 MFLRME-KAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEH----YGC 396

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL--GS 355
           +ID+ ++ G L  A+++  D  F  +A+ W S+++    H     A L    +  L  G+
Sbjct: 397 MIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGN 456

Query: 356 KPDIITIVGVLSACGR 371
             + + +    +A G+
Sbjct: 457 SGNYVLLSNTYAALGK 472



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 15/239 (6%)

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           I  + +   S+L  C   + L    QIHGF + + L+ D    +  ID  +  G    A 
Sbjct: 20  IFTSSLQFTSLLSNCRHHLHLY---QIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAF 76

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
            +F + + + D   +++ +           A+ LY ++   G +PD  +I  VL A  + 
Sbjct: 77  SIFSNKT-HPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKL 135

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA---LDFIKTMPVEPSPSI 429
             +  G +I+   +++  +     +   ++ M    G +  A    DF+    V    ++
Sbjct: 136 SAVEVGRQIHTQTVSS-ALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDV----AL 190

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
           W A+V+  V  G  E++  A K   ++   N  ++ +L   YA + R     EL   M+
Sbjct: 191 WNAMVAGYVKVG--ELKS-ARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQ 246


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/517 (32%), Positives = 286/517 (55%), Gaps = 36/517 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T  + L+  A   S++L K  H   +      +  V+T +++ Y+       ++ +F+
Sbjct: 226 SFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFD 285

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  KD  ++N +I  Y +     E LELF +M  S +  D FT   +     ++K ++ 
Sbjct: 286 KMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDW 345

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G   H   ++ G    V + NSL+ MY +C                              
Sbjct: 346 GKQTHAHILRNGSDSQVSVHNSLIDMYCEC------------------------------ 375

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                ++  + ++F+ M  ++V +W+AMI GYV+NG    AL LF +M+  D I+ + V 
Sbjct: 376 ----KILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMK-SDGIQADFVI 430

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           ++++LP    +  L   K +HG++++  L    SL  AL+  Y+KCGS++ A+R+FE+  
Sbjct: 431 MINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEK 490

Query: 320 FN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
            + KD I W+S++S +  HG   +   LYN+M C  SKPD +T +G+L+AC  SGL+ +G
Sbjct: 491 IDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKG 550

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
            E +  +  +Y  +P+ E  AC+V++LGRAG +  A + +K MP++P   +WG L+SA  
Sbjct: 551 KEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACK 610

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           MH  S++ + A + LI +EP N  NY+ LSN+YA++ +WD VA++R+ ++++GLKK PGC
Sbjct: 611 MHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGC 670

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           SW+ I+G    F VAD+ HP +  IY +L +L L ++
Sbjct: 671 SWLEINGHVTEFRVADQTHPRAGDIYTILGNLELEIK 707



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/503 (23%), Positives = 208/503 (41%), Gaps = 87/503 (17%)

Query: 8   NTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
           NT +L+ SR     ++QH  Q+             H++ +  G   NP +S+KLI  YA 
Sbjct: 28  NTLSLLFSR---CNSIQHLQQI-------------HARFILHGFHQNPTLSSKLIDCYAN 71

Query: 68  CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            G    S  VF S+   ++ L+N+++    +       L ++  M   ++ PD+ T   +
Sbjct: 72  LGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFV 131

Query: 128 SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD------- 180
            +      ++  G  IHG  +K+GF +  ++A +L  MY +C +F     LFD       
Sbjct: 132 LRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDKRSVKDL 191

Query: 181 --------EMPQRNVGSWNVRISGH----------------------------------- 197
                   E PQ + G    R+ G                                    
Sbjct: 192 GWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCI 251

Query: 198 ----ASSGD-------FSLVVRSRRVFD------QMKRRNVYAWTAMINGYVQNGDLDEA 240
                 SGD        SL  + R + D      +M  ++   W  MI  Y + G   E 
Sbjct: 252 AIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTEC 311

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF  M  +  I  +  + + V+ + + L  +  GKQ H   +R   +  VS+ N+LID
Sbjct: 312 LELFKSMA-RSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLID 370

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY +C  LD A ++F   + +K  I+WS+++ GY  +G+   A+ L++KM   G + D +
Sbjct: 371 MYCECKILDSACKIFNWMT-DKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFV 429

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
            ++ +L A    G + E ++  +       +     +   ++    + G ++ A    + 
Sbjct: 430 IMINILPAFVHIGAL-ENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEE 488

Query: 421 MPVEPSPSI-WGALVSASVMHGN 442
             ++    I W +++SA   HG+
Sbjct: 489 EKIDDKDLIMWNSMISAHANHGD 511


>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
 gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
          Length = 530

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/491 (34%), Positives = 270/491 (54%), Gaps = 7/491 (1%)

Query: 40  KQSHSQILSLG--HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ H+Q L+ G   I  P ++ KL+  YA  G P  +Q VF  IQ  D   Y SLIN Y+
Sbjct: 20  KQIHAQALTQGLLFIEQP-LACKLVNRYAKLGNPRDAQKVFGYIQDPDRVTYTSLINLYL 78

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
                 +A  +FS +    + PD  ++       G+ +DL  G L+HG+  +     + I
Sbjct: 79  STQLPIKAFSVFSKLVNEGLRPDSHSVVGALSACGKKQDLLNGKLVHGMIFRFQLGANSI 138

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + N+L+ MY + G+      +F +M  ++V SW   ++G            +RRVFD+M 
Sbjct: 139 VGNALIDMYCRNGEIKIAQLVFKQMGIKDVSSWTSLLNGFVMCNGLE---SARRVFDEMP 195

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            RN  AWTAMI GYV+ G     L +F +M+ +   +P  ++ V+VL  C+ L     G+
Sbjct: 196 WRNDVAWTAMITGYVRGGMPIRGLEMFRQMKAEGENQPTVITAVAVLSGCADLGAHDHGQ 255

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            +HG+  +  L+  V++ NAL+DMYSK G ++ A ++F D    KD  +W++++S +  H
Sbjct: 256 AVHGYISKVNLDKGVTVSNALMDMYSKGGCVESAMKIF-DRLVKKDVFSWTTMISAHSSH 314

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           GKG+ A+ ++  M+  G  P+ +T + VLS C  SGL+ E  +++N +I  Y  +P  E 
Sbjct: 315 GKGNHALEVFYDMLESGVIPNDVTFLLVLSGCSHSGLLVEANKLFNGMIQCYGFEPKIEH 374

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             C+VD+L RAG L+ A + I  MP++P   IW +L+SA +   N  + ++A K +I+LE
Sbjct: 375 YGCMVDLLCRAGLLEEAKELIDNMPMDPDAVIWRSLLSACMNQRNLGLAEIAGKKIIELE 434

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P +   YV LSN+Y  + R     ++R MM D+ + K P CS+I ++G  H F   +  H
Sbjct: 435 PHDDGVYVLLSNIYHVANRMKDARKMRKMMGDQKVMKKPACSYIELNGVVHQFHTENATH 494

Query: 518 PCSVSIYEMLD 528
             S  IY +L+
Sbjct: 495 HASTKIYMLLE 505


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/447 (35%), Positives = 256/447 (57%), Gaps = 12/447 (2%)

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           +D ++ N+LI+ Y KN G ++A ++F  M   +V   +  +A + +  GE+       + 
Sbjct: 162 EDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVR-QGEVDAARS--MF 218

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
             +  K     D +  N+++  Y K G+  +   LF  MP RNV SW+  +S +   GD 
Sbjct: 219 DEMPEK-----DTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDM 273

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
            +   +R +FD+M  +N+  WT M++   Q G ++EA  LF EM +   IE + +++VS+
Sbjct: 274 EM---ARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEM-MDAAIELDVIAVVSI 329

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           L  C+    L+ GK+IH    +++L+    +CNAL+DM+ KCG ++ A  +F+     KD
Sbjct: 330 LAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKD 389

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            ++W+ I+ G+ +HG G +A+ L+ +M   G  PD +T++ VLSAC   GL+ EG   + 
Sbjct: 390 LVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFA 449

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           ++   Y IKP  E   C+VD+LGR G +  A+D IK MP EP+  IWG+L+SA  +H N 
Sbjct: 450 NMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNV 509

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           E  +LA   L  L+P +  NY  LSN+YA + +W  +A+ R  MK  G +K+ G SWI +
Sbjct: 510 EYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIEL 569

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDL 530
           +   H F+V D+ HP S  I +M+D L
Sbjct: 570 NEAFHEFTVGDRKHPESDQISDMIDRL 596


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/481 (34%), Positives = 270/481 (56%), Gaps = 37/481 (7%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
            + T L+  YA C Q   +  VF+ +  ++   +++LI G+V      EA  LF +M   
Sbjct: 241 LIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVE 300

Query: 116 NVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
            +     T +A+  ++   + DL++G  +H L  K G   D+  +NSL+SMY K G  +E
Sbjct: 301 GLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINE 360

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
               FDE+  ++  S+                                   A+++G VQN
Sbjct: 361 ATMFFDEIAVKDTISYG----------------------------------ALLSGCVQN 386

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G  +EA ++F +MQ  + +EP+  ++VS++P CS L  L  GK  HG  I + L  + S+
Sbjct: 387 GKAEEAFLVFKKMQACN-MEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI 445

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
           CN+LIDMY+KCG +D +R+VF D    +D ++W+++++GYG+HG G EA  L+  M   G
Sbjct: 446 CNSLIDMYAKCGKIDLSRQVF-DKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQG 504

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
             PD +T + +++AC  SGL+ EG   ++++ + Y I P  E   C+VD+L R G LD A
Sbjct: 505 FAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEA 564

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
             FI++MP++    +WGAL+ A  +H N ++     + + +L PE   N+V LSN+++++
Sbjct: 565 YQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAA 624

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
            R+D  AE+R + K +G KKSPG SWI I+G  H F   D++HPCS  IY  LD++++ +
Sbjct: 625 GRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDI 684

Query: 535 R 535
           +
Sbjct: 685 K 685



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 181/397 (45%), Gaps = 43/397 (10%)

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
           GQ   ++ VF+ I   D   YN+LI  Y      + A++L+ +M    V+P+ +T   + 
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           K    + DL  G  IH  +   G   D+ ++ +L+ +Y++C +F    N+F +MP R+V 
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           +WN                                  AM+ GY  +G    A+   L+MQ
Sbjct: 168 AWN----------------------------------AMLAGYANHGMYHHAIAHLLDMQ 193

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD---VSLCNALIDMYSKC 305
               + PN  +LVS+LP  +    L  G  IH + +R  L  +   V +  AL+DMY+KC
Sbjct: 194 DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKC 253

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVG 364
             L  A RVF       D +TWS+++ G+ L  +  EA  L+  M+  G       ++  
Sbjct: 254 KQLVYACRVFHGMPVRND-VTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVAS 312

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
            L  C     ++ G +++ ++I    I         ++ M  +AG ++ A  F   + V+
Sbjct: 313 ALRVCASLADLHMGTQLH-ALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK 371

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSL--IQLEPE 459
            + S +GAL+S  V +G +E   L +K +    +EP+
Sbjct: 372 DTIS-YGALLSGCVQNGKAEEAFLVFKKMQACNMEPD 407



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 165/390 (42%), Gaps = 54/390 (13%)

Query: 3   LSSARNTFA--LVTSRNYTSAT-VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           ++ A N F   LV    + SAT V   L+V A+   L +  Q H+ I   G  ++   S 
Sbjct: 287 MTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASN 346

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            L++ YA  G   ++ + F+ I  KD   Y +L++G V+N    EA  +F  M   N+ P
Sbjct: 347 SLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D  T+ ++      +  L  G   HG  I  G  ++  + NSL+ MY KCGK      +F
Sbjct: 407 DIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVF 466

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D+MP R+V SWN                                   MI GY  +G   E
Sbjct: 467 DKMPARDVVSWNT----------------------------------MIAGYGIHGLGKE 492

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSL 294
           A  LFL M+      P+ V+ + ++  CS    ++ GK       H + I   + H +  
Sbjct: 493 ATTLFLGMK-NQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYI-- 549

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHEAVLLYNKMV 351
              ++D+ ++ G LD A +  +      D   W +++    +H     G +   +  K+ 
Sbjct: 550 --CMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLG 607

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEI 381
             G+  + + +  + SA GR    +E  E+
Sbjct: 608 PEGTG-NFVLLSNIFSAAGR---FDEAAEV 633



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 23/276 (8%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  K SH  ++  G      +   LI  YA CG+   S+ VF+ +  +DV  +N++I 
Sbjct: 423 ALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIA 482

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHG------LS 147
           GY  +    EA  LF  M     +PDD T +  I+  S      + G++  G      ++
Sbjct: 483 GYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACS------HSGLVTEGKHWFDTMT 536

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLV 206
            K G +  +     ++ +  + G   E       MP + +V  W   +       +  L 
Sbjct: 537 HKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLG 596

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL-VSVLP 265
            +  R+  ++       +  + N +   G  DEA     E+++  +++  K S   S + 
Sbjct: 597 KQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEA----AEVRIIQKVKGFKKSPGYSWIE 652

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
              SL    GG Q H     +++ H++   N ++D+
Sbjct: 653 INGSLHAFVGGDQSH--PCSRDIYHELD--NIMVDI 684


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 174/520 (33%), Positives = 285/520 (54%), Gaps = 45/520 (8%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHS---QILSL-GHISNPFVSTKLITAYALCGQPTQSQ 75
           ++T+   L + A H +L   +  H+   +  SL  H     V T L+  YA CG    + 
Sbjct: 229 ASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYAS 288

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV---SPDDFTLATISKLSG 132
            VF ++  ++   +++L+ G+V      EA  LF +M    +   SP   ++A+  +   
Sbjct: 289 RVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPT--SVASALRACA 346

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            + DL +G  +H L  K G   D+   NSL+SMY K G                      
Sbjct: 347 NLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAG---------------------- 384

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                       L+ ++  +FDQM  ++  +++A+++GYVQNG  DEA  +F +MQ  + 
Sbjct: 385 ------------LIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACN- 431

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           ++P+  ++VS++P CS L  L  GK  HG  I + +  + S+CNALIDMY+KCG +D +R
Sbjct: 432 VQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSR 491

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           ++F D    +D ++W+++++GYG+HG G EA  L+  M     +PD +T + ++SAC  S
Sbjct: 492 QIF-DVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHS 550

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           GL+ EG   ++ + + Y I P  E    +VD+L R G LD A  FI+ MP++    +WGA
Sbjct: 551 GLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGA 610

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
           L+ A  +H N ++       + QL PE   N+V LSN+++++ R+D  AE+R + K++G 
Sbjct: 611 LLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGF 670

Query: 493 KKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           KKSPGCSWI I+G  H F   D++H  S  IY+ LD++++
Sbjct: 671 KKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILV 710



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 184/414 (44%), Gaps = 47/414 (11%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           I+ P +  ++     +CG  + ++ +F+ I    ++ YN+LI  Y             S 
Sbjct: 60  INFPHIICQIDHNRMICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSL 119

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
                  P+++T   + K    + DL     +H  + + G   D+ ++ +L+ +Y KC  
Sbjct: 120 RRRRLPQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCAS 179

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
           F     +F  MP R+V +WN  ++G+A  G +S                           
Sbjct: 180 FRHAATVFRRMPARDVVAWNAMLAGYALHGKYS--------------------------- 212

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
                  + +   L MQ  D   PN  +LV++LP  +    LS G+ +H +++R    HD
Sbjct: 213 -------DTIACLLLMQ--DDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHD 263

Query: 292 ----VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
               V +  AL+DMY+KCG L  A RVFE  +  ++ +TWS++V G+ L G+  EA  L+
Sbjct: 264 HKDGVLVGTALLDMYAKCGHLVYASRVFEAMAV-RNEVTWSALVGGFVLCGRMLEAFSLF 322

Query: 348 NKMVCLG-SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
             M+  G       ++   L AC     +  G +++ +++    +         ++ M  
Sbjct: 323 KDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLH-ALLAKSGLHTDLTAGNSLLSMYA 381

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +AG +D+A      M V+ + S + ALVS  V +G +   D A++   +++  N
Sbjct: 382 KAGLIDQATTLFDQMVVKDTVS-YSALVSGYVQNGKA---DEAFRVFRKMQACN 431


>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 174/521 (33%), Positives = 279/521 (53%), Gaps = 11/521 (2%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILS-LGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           S T+   L   A   +L++ K  H  I+   G   +  V   L++ YA C     +   F
Sbjct: 288 SVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTF 347

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
             I  KD+  +N++++ + ++      + L   M    + PD  T+ TI +    +  + 
Sbjct: 348 LMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVK 407

Query: 139 VGMLIHGLSIKIGFV---VDVILANSLMSMYVKCGKFSECLNLFDEMPQ-RNVGSWNVRI 194
                H  SI+ G +       L N ++  Y KCG     +N+F  + + RNV + N  I
Sbjct: 408 KVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMI 467

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           SG+ +S        +  +F+ M   ++  W  M+  Y +N   D+AL LF E+Q +  ++
Sbjct: 468 SGYVNSSSHD---DAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQG-MK 523

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+ V+++S+LP C+ +  +   +Q HG+ IR   N DV L  A IDMYSKCGS+  A ++
Sbjct: 524 PDIVTIMSILPACAHMASVHMLRQCHGYVIRACFN-DVRLNGAFIDMYSKCGSVFGAYKL 582

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F  SS  KD + ++++V G+ +HG G EA+ +++ M+ LG KPD + I  VL AC  +GL
Sbjct: 583 FL-SSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGL 641

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++EG +I+NS+   +  +PT E  ACVVD+L R G++  A  F+  MP+E + +IWG L+
Sbjct: 642 VDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLL 701

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
            A   H   E+  +    L ++E +N  NYV +SNLYA+  RWD V E+R +M+ R LKK
Sbjct: 702 GACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRELKK 761

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
             GCSWI +  + + F   D +HP    IY  L  L  +M+
Sbjct: 762 PAGCSWIEVGRRKNVFIAGDSSHPQRSIIYRTLSTLDQLMK 802



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 135/524 (25%), Positives = 232/524 (44%), Gaps = 60/524 (11%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           +V      S T+   L V A  R     K  HS ++  G  S+      LI+ YA CG  
Sbjct: 73  MVNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLV 131

Query: 72  -TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
            + +   FN I+ KDV  +N++I G+ +N    EA +LF  M    + P+  T+A+I  +
Sbjct: 132 CSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPV 191

Query: 131 SGEIKD---LNVGMLIHGLSIK-IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
              +++      G  +H   ++ +  V DV + NSLMS Y++ G+               
Sbjct: 192 CASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQME------------- 238

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
                                ++  +F  MK R++ +W A+I GY  NG+  +AL LF E
Sbjct: 239 ---------------------KAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSE 277

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKC 305
               + I+P+ V+LVSVLP C+ +  L   K IHG+ IR   L  D S+ NAL+  Y+KC
Sbjct: 278 FISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKC 337

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
                A + F   S  KD I+W++I+  +   G     V L + M+  G +PD ITI+ +
Sbjct: 338 NYTQAALQTFLMIS-RKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTI 396

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIK----PTTEICACVVDMLGRAGQLDRALDFIKTM 421
           +        + +  E ++  I    ++    PT  +   ++D   + G +  A++   ++
Sbjct: 397 IQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPT--LGNGMLDAYAKCGNMKYAVNIFGSL 454

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
             + +     +++S  V   NS   D AY     +   + + +  +  +YA +   D   
Sbjct: 455 SEKRNVVTCNSMISGYV---NSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQAL 511

Query: 482 ELRTMMKDRGLKKS--------PGCSWI-SIHGKTHCFSVADKA 516
            L   ++ +G+K          P C+ + S+H    C     +A
Sbjct: 512 SLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRA 555



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 123/270 (45%), Gaps = 10/270 (3%)

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLD-EALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           ++F +M +R+   W  +++G       + E + LF  M + +  +PN V++  VLP C+ 
Sbjct: 34  KLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCAR 93

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC--ARRVFEDSSFNKDAITW 327
           L     GK +H + I+  L       NALI MY+KCG L C  A   F    F KD ++W
Sbjct: 94  LRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCG-LVCSDAYAAFNRIEF-KDVVSW 150

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG---RSGLINEGLEIYNS 384
           +++++G+  +    EA  L++ M+    +P+  TI  +L  C     +     G E++  
Sbjct: 151 NAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCH 210

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           V+    +     +   ++    R GQ+++A    + M      S W A+++    +G   
Sbjct: 211 VLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVS-WNAIIAGYASNGEWL 269

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
                +   I LE   P +   +S L A +
Sbjct: 270 KALELFSEFISLETIKPDSVTLVSVLPACA 299



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 17/113 (15%)

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY-GLHGKGHEAVLLYNKMV 351
           SLC  L+++Y+K G+LD   ++F +    +D + W+ ++SG  G      E + L+  M 
Sbjct: 14  SLCKGLLNLYAKSGALDYCNKLFGEMD-QRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMH 72

Query: 352 CLG-SKPDIITIVGVLSACGR----------SGLINEGLEIY----NSVINTY 389
            +  +KP+ +TI  VL  C R          S +I  GLE +    N++I+ Y
Sbjct: 73  MVNEAKPNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMY 125


>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 181/534 (33%), Positives = 283/534 (52%), Gaps = 54/534 (10%)

Query: 13  VTSRNYTSATVQHFLQ--VSATHR--SLKLTKQSHSQILSLGHISNPFVSTKLITAYALC 68
           V  RN T  + +  L+  +S  HR  SL   KQ H+Q+L        FV  KLI A++LC
Sbjct: 3   VPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLC 62

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
            Q T +  VFN IQ  DV LYN+LI  +V+N     A  +F  M  S V  D+FT   + 
Sbjct: 63  RQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLL 122

Query: 129 K-LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
           K  SG++  + V  +IH    K+GF +D+ + NSL+  Y K G+  E             
Sbjct: 123 KACSGKVW-VRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGE------------- 168

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
                                +RR+FD+M  R+  +W  +++GYV+ G+++ A  LF +M
Sbjct: 169 ---------------------ARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKM 207

Query: 248 QLKDRIEPNKV---------SLVSVLPTC--SSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
             ++ +  + +         +++S+L  C  S L+GL  GK++H    R        + N
Sbjct: 208 PARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGL--GKRVHASIERTRFKCSTPVSN 265

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           ALIDMY+KCGSL+ A  +F      KD ++W++I+ G  +HG G +A+ L+++M   G  
Sbjct: 266 ALIDMYAKCGSLENALSIFH-GMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFV 324

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD +T VGVL AC  +G ++EGL  ++++   Y + P  E   C+VD+LGR G+L  A  
Sbjct: 325 PDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFR 384

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
            + +MP+EP+  IWG L+ A  MH  + + +  +  L++ E  +  N   LSN+YA++  
Sbjct: 385 LVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGD 444

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           WD  A +R  MK   ++K  G S I +  + H F+V D++HP S  IY+ +D L
Sbjct: 445 WDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTIDGL 498


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 172/547 (31%), Positives = 290/547 (53%), Gaps = 37/547 (6%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLI--TAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           +SL   KQ H+ +L LG  S+PF++ KL+   A +L      +  +F    + DV+++N+
Sbjct: 16  KSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNT 75

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSP-DDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           LI G  ++    ++L  F  M  ++ SP D F+ A I K +  ++ + VG+ +H  ++  
Sbjct: 76  LIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVH 135

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G    + +  +L+SMY +CG       +FDEMP+ N  +WN  ++     GD       R
Sbjct: 136 GLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMK---GGR 192

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI----------------- 253
            +FD M  RN+ +W  M+ GY + G+L+ A  +FLEM +KD +                 
Sbjct: 193 ELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEE 252

Query: 254 -------------EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
                         PN+ SL  VL  C+    L  GK +HGF  +  L   VS+ NAL+D
Sbjct: 253 AFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLD 312

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
            YSKCG++  A+ VFE     ++ ++W+S+++   +HG G EA+ +++KM   G +PD I
Sbjct: 313 TYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEI 372

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
             + +L AC  +GL+ +G E ++ +   Y I+P+ E   C+VD+ GRAGQL +A +F+  
Sbjct: 373 AFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQ 432

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MP+  +  IW  L+ A  MHG+ ++ +   + L +L+P N S++V LSN YA + +W   
Sbjct: 433 MPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDA 492

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR-GAAA 539
           A +R  M ++ + K+PG S I +    + F    K +  +   Y+ L ++I  +R     
Sbjct: 493 ASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGY 552

Query: 540 SPHLGKM 546
            P +G++
Sbjct: 553 VPEIGRV 559



 Score = 38.9 bits (89), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 85/227 (37%), Gaps = 23/227 (10%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI-QHKD 85
           L   A   +L+  K  H  I   G      V+  L+  Y+ CG    +QLVF  I   ++
Sbjct: 276 LSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERN 335

Query: 86  VYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTL---------ATISKLSGEIK 135
           +  + S++   +  HGH  EA+ +F  M  S + PD+            A + +   E  
Sbjct: 336 IVSWTSMMAA-LAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYF 394

Query: 136 DLNVGMLIHGLSIK-IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG-SWNVR 193
           D   GM     SI+  G +VD         +Y + G+  +      +MP       W   
Sbjct: 395 DKMKGMYNIEPSIEHYGCMVD---------LYGRAGQLQKAYEFVCQMPIPCTAIIWRTL 445

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           +   +  GD  L  + +    ++   N      + N Y   G   +A
Sbjct: 446 LGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDA 492


>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
          Length = 499

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/386 (41%), Positives = 231/386 (59%), Gaps = 6/386 (1%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ-RNVGSWNVRISGHASSG 201
           +H L ++ G   D   + SL+  Y  CG  +    +FDE     +V SWNV I G+  SG
Sbjct: 93  LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSG 152

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D +   R+R +FD M  RNV +WT +I  Y Q    +EA+ +F  MQ++  IEP+ V+L+
Sbjct: 153 DLA---RARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEG-IEPDGVALL 208

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVL  C  L  +  G+ +H F +R+ L  ++ L NA+IDMY KCGS+  A  VFE     
Sbjct: 209 SVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGME-Q 267

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K  +TW+++++G+ LHG G EAV L+ +M      P+ IT + VLS C   GL + G   
Sbjct: 268 KSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWY 327

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + ++++ Y+IKP  E   C++D+LGRAG L  A   I+ MP + + +IWGAL++A+  HG
Sbjct: 328 FKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHG 387

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           ++E+ + A   LI+LEP N  NY+ LSN+YA   RWDAV ELR  M+DRGL+  PG S I
Sbjct: 388 DTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSI 447

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEML 527
            + G  H F+  D +HP    I E+L
Sbjct: 448 DVDGMVHEFTSRDGSHPSLHKIREVL 473



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 153/346 (44%), Gaps = 81/346 (23%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN-SIQHKDVYLYNSLINGYVKN 99
           Q HS ++  GH ++P  S  L+ AY  CG    ++ VF+ +  + DV  +N +I+GYVK+
Sbjct: 92  QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKS 151

Query: 100 -------------HGHN------------------EALELFSNMYYSNVSPDDFTLATIS 128
                         G N                  EA+E+F  M    + PD   L ++ 
Sbjct: 152 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 211

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
              G++  +++G  +H   ++ G   ++ L N+++ MYVKCG   + L +F+ M Q+++ 
Sbjct: 212 SACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIV 271

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           +W   I+G A  G  S                                  EA+ LF  M+
Sbjct: 272 TWTTMIAGFALHGLGS----------------------------------EAVELFRRME 297

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSG-GK-----QIHGFAIRKELNHDVSLCNALIDMY 302
            K+ + PN ++ ++VL  CS  +GL+  G+      +  + I+  + H       +ID+ 
Sbjct: 298 -KENVSPNDITFLAVLSVCSH-VGLTDLGRWYFKTMVSQYKIKPRVEH----YGCMIDLL 351

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHEAVL 345
            + G L  AR + +D  F  +A  W ++++    HG    G +A+L
Sbjct: 352 GRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALL 397



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 38/217 (17%)

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           Q+H   +R     D     +L+  Y  CGS+  ARRVF++++   D ++W+ ++ GY   
Sbjct: 92  QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKS 151

Query: 338 G-------------------------------KGHEAVLLYNKMVCLGSKPDIITIVGVL 366
           G                               +  EA+ ++ +M   G +PD + ++ VL
Sbjct: 152 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 211

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           SACG  G+++ G  ++  V+     +    + A ++DM  + G + +AL+  + M  + S
Sbjct: 212 SACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNA-IIDMYVKCGSVKKALEVFEGME-QKS 269

Query: 427 PSIWGALVSASVMHG-NSEMQDLAYKSLIQLEPENPS 462
              W  +++   +HG  SE  +L  +    +E EN S
Sbjct: 270 IVTWTTMIAGFALHGLGSEAVELFRR----MEKENVS 302



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 12/223 (5%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           + L +  H  +L  G      +   +I  Y  CG   ++  VF  ++ K +  + ++I G
Sbjct: 220 VDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAG 279

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG-----MLIHGLSIKI 150
           +  +   +EA+ELF  M   NVSP+D T   +  +   +   ++G      ++    IK 
Sbjct: 280 FALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIK- 338

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRS 209
                V     ++ +  + G   E   L  +MP + N   W   ++   + GD  L  ++
Sbjct: 339 ---PRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQA 395

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                +++  N   +  + N Y +    D   V  L + ++DR
Sbjct: 396 LLHLIELEPHNSGNYILLSNIYAEQERWDA--VRELRISMRDR 436


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 173/512 (33%), Positives = 276/512 (53%), Gaps = 38/512 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R+++  ++ H+ ++   ++   ++ T+LI  Y  C     ++ VF+ +  ++V  + ++I
Sbjct: 72  RAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMI 131

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           + Y +    ++AL LF  M  S   P++FT AT+           +G  IH   IK+ + 
Sbjct: 132 SAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYE 191

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
             V + +SL+ MY K GK  E   +F  +P+R+                           
Sbjct: 192 AHVYVGSSLLDMYAKDGKIHEARGIFQCLPERD--------------------------- 224

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                  V + TA+I+GY Q G  +EAL LF  +Q ++ ++ N V+  SVL   S L  L
Sbjct: 225 -------VVSCTAIISGYAQLGLDEEALELFRRLQ-REGMQSNYVTYTSVLTALSGLAAL 276

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GKQ+H   +R E+   V L N+LIDMYSKCG+L  ARR+F D+   +  I+W++++ G
Sbjct: 277 DHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIF-DTLHERTVISWNAMLVG 335

Query: 334 YGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEI-YNSVINTYRI 391
           Y  HG+G E + L+N M+     KPD +T++ VLS C   GL ++G++I Y+       +
Sbjct: 336 YSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISV 395

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           +P ++   CVVDMLGRAG+++ A +F+K MP EPS +IWG L+ A  +H N ++ +    
Sbjct: 396 QPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGH 455

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            L+Q+EPEN  NYV LSNLYAS+ RW+ V  LR +M  + + K PG SWI +    H F 
Sbjct: 456 QLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFH 515

Query: 512 VADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            +D +HP    +   + +L    + A   P L
Sbjct: 516 ASDCSHPRREEVSAKVQELSARFKEAGYVPDL 547



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 122/246 (49%), Gaps = 13/246 (5%)

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           ++N ++ +  L EAL   L M L+  ++ N     +VL  C     +  G+++H   I+ 
Sbjct: 32  VLNIHIHDTRLREAL---LHMALRG-LDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKT 87

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
                V L   LI  Y KC SL  AR VF D    ++ ++W++++S Y   G   +A+ L
Sbjct: 88  HYLPCVYLRTRLIVFYVKCDSLRDARHVF-DVMPERNVVSWTAMISAYSQRGYASQALSL 146

Query: 347 YNKMVCLGSKPDIITIVGVLSAC-GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           + +M+  G++P+  T   VL++C G SG +  G +I++ +I     +    + + ++DM 
Sbjct: 147 FVQMLRSGTEPNEFTFATVLTSCIGSSGFV-LGRQIHSHIIKL-NYEAHVYVGSSLLDMY 204

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN-PSNY 464
            + G++  A    + +P     S   A++S     G   + + A +   +L+ E   SNY
Sbjct: 205 AKDGKIHEARGIFQCLPERDVVSC-TAIISGYAQLG---LDEEALELFRRLQREGMQSNY 260

Query: 465 VSLSNL 470
           V+ +++
Sbjct: 261 VTYTSV 266


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/510 (32%), Positives = 282/510 (55%), Gaps = 42/510 (8%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQH 83
           FL+   T  S+  TKQ+H+ +L    + NP  S+KLI+  AL   G    ++ +F  +Q+
Sbjct: 16  FLKTHCT--SISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQN 73

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
            D ++ N++I GY ++    EA+ L+  M    V  D++T   +      +  + +G   
Sbjct: 74  PDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRF 133

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H   +K GF  D+ + N+L+  Y  CG F    ++FDE   R+V +WN+           
Sbjct: 134 HCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNI----------- 182

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                                  MIN ++  G  ++A  L  EM   D + P++V++VS+
Sbjct: 183 -----------------------MINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSL 219

Query: 264 LPTCSSLIGLSGGKQIHGFAI---RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           +P C+ L  L  GK +H ++    + E+N D+ L  AL+DMY+KCGS+D A +VF     
Sbjct: 220 VPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRV 279

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            ++  TW++++ G  +HG G +A+ L+++M      PD +T + +L AC  +GL++EGL 
Sbjct: 280 -RNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLA 338

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           ++ ++ N ++I+P  E   CVVD+L RA ++D AL FI+ MP++ +  +W  L+ A    
Sbjct: 339 MFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSG 398

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
           G+ ++ +   + +I+LEP++   YV LSNLYA   +WD   +LR  MK++G++K+PGCSW
Sbjct: 399 GHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSW 458

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           I ++G  H F   D++H  +  IY M++++
Sbjct: 459 IELNGMIHQFVAGDRSHLQTEQIYAMIEEM 488



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 115/247 (46%), Gaps = 14/247 (5%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           NYT   V   L   A   ++KL ++ H ++L  G  S+ FV   LI  Y  CG    +  
Sbjct: 111 NYTYPFV---LAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACD 167

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIK 135
           VF+    +DV  +N +IN ++      +A +L   M    N+ PD+ T+ ++     ++ 
Sbjct: 168 VFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLG 227

Query: 136 DLNVGMLIHGLSI---KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
           +L  G  +H  S    K     D++L  +L+ MY KCG     L +F  M  RNV +WN 
Sbjct: 228 NLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNA 287

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVY----AWTAMINGYVQNGDLDEALVLFLEMQ 248
            I G A  G     +    +FDQM+   +      + A++      G +DE L +F  M+
Sbjct: 288 LIGGLAMHGHGEDAI---SLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMK 344

Query: 249 LKDRIEP 255
            K +IEP
Sbjct: 345 NKFQIEP 351


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/481 (34%), Positives = 270/481 (56%), Gaps = 37/481 (7%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
            + T L+  YA C Q   +  VF+ +  ++   +++LI G+V      EA  LF +M   
Sbjct: 241 LIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVE 300

Query: 116 NVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
            +     T +A+  ++   + DL++G  +H L  K G   D+  +NSL+SMY K G  +E
Sbjct: 301 GLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINE 360

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
               FDE+  ++  S+                                   A+++G VQN
Sbjct: 361 ATMFFDEIAVKDTISYG----------------------------------ALLSGCVQN 386

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G  +EA ++F +MQ  + +EP+  ++VS++P CS L  L  GK  HG  I + L  + S+
Sbjct: 387 GKAEEAFLVFKKMQACN-MEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI 445

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
           CN+LIDMY+KCG +D +R+VF D    +D ++W+++++GYG+HG G EA  L+  M   G
Sbjct: 446 CNSLIDMYAKCGKIDLSRQVF-DKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQG 504

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
             PD +T + +++AC  SGL+ EG   ++++ + Y I P  E   C+VD+L R G LD A
Sbjct: 505 FAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEA 564

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
             FI++MP++    +WGAL+ A  +H N ++     + + +L PE   N+V LSN+++++
Sbjct: 565 YQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAA 624

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
            R+D  AE+R + K +G KKSPG SWI I+G  H F   D++HPCS  IY  LD++++ +
Sbjct: 625 GRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDI 684

Query: 535 R 535
           +
Sbjct: 685 K 685



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 181/397 (45%), Gaps = 43/397 (10%)

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
           GQ   ++ VF+ I   D   YN+LI  Y      + A++L+ +M    V+P+ +T   + 
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           K    + DL  G  IH  +   G   D+ ++ +L+ +Y++C +F    N+F +MP R+V 
Sbjct: 108 KACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           +WN                                  AM+ GY  +G    A+   L+MQ
Sbjct: 168 AWN----------------------------------AMLAGYANHGMYHHAIAHLLDMQ 193

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD---VSLCNALIDMYSKC 305
               + PN  +LVS+LP  +    L  G  IH + +R  L  +   V +  AL+DMY+KC
Sbjct: 194 DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKC 253

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVG 364
             L  A RVF       D +TWS+++ G+ L  +  EA  L+  M+  G       ++  
Sbjct: 254 KQLVYACRVFHGMPVRND-VTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVAS 312

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
            L  C     ++ G +++ ++I    I         ++ M  +AG ++ A  F   + V+
Sbjct: 313 ALRVCASLADLHMGTQLH-ALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK 371

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSL--IQLEPE 459
            + S +GAL+S  V +G +E   L +K +    +EP+
Sbjct: 372 DTIS-YGALLSGCVQNGKAEEAFLVFKKMQACNMEPD 407



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 165/390 (42%), Gaps = 54/390 (13%)

Query: 3   LSSARNTFA--LVTSRNYTSAT-VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           ++ A N F   LV    + SAT V   L+V A+   L +  Q H+ I   G  ++   S 
Sbjct: 287 MTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASN 346

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            L++ YA  G   ++ + F+ I  KD   Y +L++G V+N    EA  +F  M   N+ P
Sbjct: 347 SLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D  T+ ++      +  L  G   HG  I  G  ++  + NSL+ MY KCGK      +F
Sbjct: 407 DIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVF 466

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D+MP R+V SWN                                   MI GY  +G   E
Sbjct: 467 DKMPARDVVSWNT----------------------------------MIAGYGIHGLGKE 492

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSL 294
           A  LFL M+      P+ V+ + ++  CS    ++ GK       H + I   + H +  
Sbjct: 493 ATTLFLGMK-NQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYI-- 549

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHEAVLLYNKMV 351
              ++D+ ++ G LD A +  +      D   W +++    +H     G +   +  K+ 
Sbjct: 550 --CMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLG 607

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEI 381
             G+  + + +  + SA GR    +E  E+
Sbjct: 608 PEGTG-NFVLLSNIFSAAGR---FDEAAEV 633



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 23/276 (8%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  K SH  ++  G      +   LI  YA CG+   S+ VF+ +  +DV  +N++I 
Sbjct: 423 ALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIA 482

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHG------LS 147
           GY  +    EA  LF  M     +PDD T +  I+  S      + G++  G      ++
Sbjct: 483 GYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACS------HSGLVTEGKHWFDTMT 536

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLV 206
            K G +  +     ++ +  + G   E       MP + +V  W   +       +  L 
Sbjct: 537 HKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLG 596

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL-VSVLP 265
            +  R+  ++       +  + N +   G  DEA     E+++  +++  K S   S + 
Sbjct: 597 KQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEA----AEVRIIQKVKGFKKSPGYSWIE 652

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
              SL    GG Q H     +++ H++   N ++D+
Sbjct: 653 INGSLHAFVGGDQSH--PCSRDIYHELD--NIMVDI 684


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/490 (32%), Positives = 281/490 (57%), Gaps = 6/490 (1%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T +I+  A  G  + ++L+      +DV  + SLI  Y +     EA++ F NM    ++
Sbjct: 178 TMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIA 237

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           PDD T+  +     ++KDL +G  +H L  + G  +   L  +L+ MY KCG F     +
Sbjct: 238 PDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREV 297

Query: 179 FDEMPQ-RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           FD + + R   SWN  I G+   G   +   +R +FDQM+ R++  + +MI GY+ +G L
Sbjct: 298 FDAVGRGRRPQSWNAIIDGYCKHGHVDV---ARSLFDQMEVRDIITFNSMITGYIHSGQL 354

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
            EAL+LF+ M+  D +  +  ++VS+L  C+SL  L  G+ +H     + +  D+ +  A
Sbjct: 355 REALLLFMNMRRHD-LRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTA 413

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           L+DMY KCG ++ A  VF+     +D   W+++++G   +G G   +  + +M C G +P
Sbjct: 414 LLDMYMKCGRVNEATIVFQRMG-KRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQP 472

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           + ++ + VL+AC  S L+NEG   ++ +   Y I P  E   C++D+LGR+G LD A+D 
Sbjct: 473 NPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDL 532

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
           +KTMP++P+  IW +++SA  +H   ++   A + L+++EP+  + YV L N+   SR+W
Sbjct: 533 VKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKW 592

Query: 478 DAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGA 537
           +  +++R +M++R +KK+ G S +++ G+ H F V+DK+HP  + I  ML+++   ++ A
Sbjct: 593 EDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSA 652

Query: 538 AASPHLGKMT 547
             SP   ++T
Sbjct: 653 GYSPITSQVT 662



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 212/464 (45%), Gaps = 40/464 (8%)

Query: 36   LKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
            L+  +Q H  +L  G I SN F+S  L+  Y+  G    +    N I  +DV  +NS+++
Sbjct: 911  LEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILS 970

Query: 95   GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
             Y       EA+     M +    P   +  ++  LSG+  D  +G+ IHG+  K+GF  
Sbjct: 971  MYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSC 1030

Query: 155  DVI-LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
              + +  +L+ MY KC  F   L +F+E+P   +   N            SL+  S R  
Sbjct: 1031 SSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCN------------SLITSSLRC- 1077

Query: 214  DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP--TCSSLI 271
                                  ++ +A +  L   + + + P+ V+  + +   + S+  
Sbjct: 1078 ----------------------NMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASP 1115

Query: 272  GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
             L+  + +H   ++     D+++C++LI  Y+  G L  +  +FE    + + I +++I+
Sbjct: 1116 SLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFE-GLLDPNVICFTAII 1174

Query: 332  SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            S    +G G  A+ L+++MV  G KPD +T +  ++ C ++G+  EG  +   +  +  +
Sbjct: 1175 SACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASREL 1234

Query: 392  KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
             P     AC+V++L R G +  A++ ++  P+      W +L+ +   HG + +   A  
Sbjct: 1235 DPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAAN 1294

Query: 452  SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
             LI +  ++P+  + +SN +      +    ++ M   + +KKS
Sbjct: 1295 MLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKKS 1338



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 215/482 (44%), Gaps = 55/482 (11%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD-----V 86
           T R+++   + H+ + + G + +P  +  L+ +   C  P+    +  ++   D      
Sbjct: 8   TPRTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRMPAST 67

Query: 87  YLYNSLINGYVK----NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV-GM 141
           +L+++ +    +    +   +    LF  M  + V PD FT   + K S   +   +   
Sbjct: 68  FLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCT 127

Query: 142 LIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
           ++H   ++         +ANSL+ MY + G   +    FDE+P ++  SW + ISG A  
Sbjct: 128 MLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKM 187

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           G  S    +R +  Q   R+V +WT++I  Y +     EA+  F  M L + I P+ V++
Sbjct: 188 GMLS---DARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNM-LSEGIAPDDVTV 243

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE---- 316
           + VL  CS L  L  G  +H     K ++   +L  ALIDMY+KCG    AR VF+    
Sbjct: 244 IGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGR 303

Query: 317 ---DSSFN------------------------KDAITWSSIVSGYGLHGKGHEAVLLYNK 349
                S+N                        +D IT++S+++GY   G+  EA+LL+  
Sbjct: 304 GRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMN 363

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M     + D  T+V +LSAC   G + +G  ++ + I    ++    I   ++DM  + G
Sbjct: 364 MRRHDLRVDNFTVVSLLSACASLGALPQGRALH-ACIELRLVETDIYIGTALLDMYMKCG 422

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE----NPSNYV 465
           +++ A    + M  +     W A+++    +G   M     +   Q+  +    NP +Y+
Sbjct: 423 RVNEATIVFQRMG-KRDVHAWTAMIAGLAFNG---MGKAGLEYFYQMRCDGFQPNPVSYI 478

Query: 466 SL 467
           ++
Sbjct: 479 AV 480



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 144/352 (40%), Gaps = 70/352 (19%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   +  + L+L    HS +   G   +  +   LI  YA CG    ++ VF+++
Sbjct: 242 TVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAV 301

Query: 82  --------------------------------QHKDVYLYNSLINGYVKNHGHNEALELF 109
                                           + +D+  +NS+I GY+ +    EAL LF
Sbjct: 302 GRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLF 361

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSLMSMYVK 168
            NM   ++  D+FT+ ++      +  L  G  +H   I++  V  D+ +  +L+ MY+K
Sbjct: 362 MNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHA-CIELRLVETDIYIGTALLDMYMK 420

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG+ +E   +F  M +R+V +W                                  TAMI
Sbjct: 421 CGRVNEATIVFQRMGKRDVHAW----------------------------------TAMI 446

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK-QIHGFAIRKE 287
            G   NG     L  F +M+  D  +PN VS ++VL  CS    L+ G+       I   
Sbjct: 447 AGLAFNGMGKAGLEYFYQMRC-DGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYN 505

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           ++  +     +ID+  + G LD A  + +      +++ W+SI+S   +H +
Sbjct: 506 IHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKR 557



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 148/345 (42%), Gaps = 50/345 (14%)

Query: 84   KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
            +DV   N +I G++++   + A  ++  M  S +     T +TI  +    + L     +
Sbjct: 760  RDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ----L 815

Query: 144  HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
            HG  + +G   +  + ++L++ Y+        L+LF E+P +N    NV + G    G+ 
Sbjct: 816  HGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRG---LGNL 872

Query: 204  SLVVRSRRVFDQMKRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
             L       F  M+R+    N  ++   + G  QNG+                       
Sbjct: 873  KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEW---------------------- 910

Query: 260  LVSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCG-SLDCARRVFED 317
                         L  G+Q+HG  ++   +  ++ L N+L+D+YS  G S+D  + +  +
Sbjct: 911  -------------LEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKAL--N 955

Query: 318  SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               ++D I+W+SI+S Y   G   EAV    +M+  G  P I + V +L+  G++G    
Sbjct: 956  DILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQL 1015

Query: 378  GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
            G++I+  V        +  +   ++DM G+    D +L     +P
Sbjct: 1016 GVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIP 1060



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 138/341 (40%), Gaps = 39/341 (11%)

Query: 26   FLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
             L +S      +L  Q H  +  LG   S+  V T LI  Y  C     S  +FN I   
Sbjct: 1003 LLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSI 1062

Query: 85   DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL-ATISKLS-GEIKDLNVGML 142
             +   NSLI   ++ +  + ALE+   M    V+PDD T  AT+  +S      L    +
Sbjct: 1063 ALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQM 1122

Query: 143  IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
            +H   +K+GF +D+ + +SL++ Y   G+ S    +F+ +   NV  +   IS  A  GD
Sbjct: 1123 LHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGD 1182

Query: 203  FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
             +   R+  +FDQM               V +G                 ++P+ V+ + 
Sbjct: 1183 GA---RAMELFDQM---------------VSSG-----------------LKPDNVTFLC 1207

Query: 263  VLPTCSSLIGLSGGKQ-IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
             +  C        G+  I      +EL+ D      ++++ S+ G +  A  + E S   
Sbjct: 1208 AIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLR 1267

Query: 322  KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362
                 WSS++     HG+        N ++ +G K    T+
Sbjct: 1268 HYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTL 1308



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 108/241 (44%), Gaps = 23/241 (9%)

Query: 13   VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
            VT  + T +     + +SA+  SL   +  HS ++ LG   +  V + LITAYA  GQ +
Sbjct: 1095 VTPDDVTFSATMKAISLSAS-PSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLS 1153

Query: 73   QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
             S L+F  +   +V  + ++I+   +      A+ELF  M  S + PD+ T   +  ++G
Sbjct: 1154 SSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTF--LCAIAG 1211

Query: 133  EIKDLNVGMLIHGLSIKIGFVVDVILANS-----------LMSMYVKCGKFSECLNLFDE 181
              +    GM   G       V++++ A+            ++++  + G   E + + ++
Sbjct: 1212 CDQ---AGMFEEG-----RLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQ 1263

Query: 182  MPQRN-VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
             P R+   +W+  +    + G+  L  R+  +   + R++      + N +   GD + A
Sbjct: 1264 SPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRETA 1323

Query: 241  L 241
            L
Sbjct: 1324 L 1324


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 177/509 (34%), Positives = 281/509 (55%), Gaps = 37/509 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
            + K+ K  H   L + +  + +V   L+  Y   G+  ++Q  F  +   D+  ++ +I
Sbjct: 219 EAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMI 278

Query: 94  NGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           + Y ++    EALELF  M  S+V  P++FT A++ +    +  LN+G  IH   +K+G 
Sbjct: 279 SRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGL 338

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             +V ++N+LM +Y KCG+    + LF        GS                       
Sbjct: 339 DSNVFVSNALMDVYAKCGEIENSVKLF-------TGS----------------------- 368

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
                 +N  AW  +I GYVQ GD ++AL LF  M   D I+P +V+  SVL   +SL+ 
Sbjct: 369 ----TEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLD-IQPTEVTYSSVLRASASLVA 423

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  G+QIH   I+   N D  + N+LIDMY+KCG +D AR  F D    +D ++W++++ 
Sbjct: 424 LEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTF-DKMDKQDEVSWNALIC 482

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           GY +HG G EA+ L++ M    SKP+ +T VGVLSAC  +GL+++G   + S++  Y I+
Sbjct: 483 GYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIE 542

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           P  E   C+V +LGR+GQ D A+  I  +P +PS  +W AL+ A V+H N ++  +  + 
Sbjct: 543 PCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQR 602

Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           ++++EP++ + +V LSN+YA+++RWD VA +R  MK + +KK PG SW+   G  H F+V
Sbjct: 603 VLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTV 662

Query: 513 ADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            D +HP    I+ ML+ L    R A   P
Sbjct: 663 GDTSHPNIKLIFAMLEWLYKKTRDAGYVP 691



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 47/332 (14%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
           ++V   N+T A+V   LQ  A+   L L  Q HS +L +G  SN FVS  L+  YA CG+
Sbjct: 301 SVVVPNNFTFASV---LQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGE 357

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
              S  +F     K+   +N++I GYV+     +AL LFSNM   ++ P + T +++ + 
Sbjct: 358 IENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRA 417

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
           S  +  L  G  IH L+IK  +  D ++ANSL+ MY KCG+  +    FD+M +++  SW
Sbjct: 418 SASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSW 477

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           N  I G++  G   L + +  +FD M++ N                              
Sbjct: 478 NALICGYSIHG---LGMEALNLFDMMQQSNS----------------------------- 505

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGK-----QIHGFAIRKELNHDVSLCNALIDMYSKC 305
              +PNK++ V VL  CS+   L  G+      +  + I   + H       ++ +  + 
Sbjct: 506 ---KPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEH----YTCMVWLLGRS 558

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           G  D A ++  +  F    + W +++    +H
Sbjct: 559 GQFDEAVKLIGEIPFQPSVMVWRALLGACVIH 590



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/459 (22%), Positives = 199/459 (43%), Gaps = 46/459 (10%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S +  + LQ +  +R     K  H  IL  G   + F    L+  Y   G    +  +F+
Sbjct: 3   SHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFD 62

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +   +   + +L  G+ ++H    A  L   ++      + F   T+ KL   +   + 
Sbjct: 63  EMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADT 122

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
            + +H    K+G   D  +  +L+  Y  CG                             
Sbjct: 123 CLSVHAYVYKLGHQADAFVGTALIDAYSVCGN---------------------------- 154

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                 V  +R+VFD +  +++ +WT M+  Y +N   +++L+LF +M++     PN  +
Sbjct: 155 ------VDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMG-YRPNNFT 207

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           + + L +C+ L     GK +HG A++   + D+ +  AL+++Y+K G +  A++ FE+  
Sbjct: 208 ISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMP 267

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKM----VCLGSKPDIITIVGVLSACGRSGLI 375
              D I WS ++S Y    K  EA+ L+ +M    V +   P+  T   VL AC    L+
Sbjct: 268 -KDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVV---PNNFTFASVLQACASLVLL 323

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           N G +I++ V+    +     +   ++D+  + G+++ ++    T   E +   W  ++ 
Sbjct: 324 NLGNQIHSCVLKV-GLDSNVFVSNALMDVYAKCGEIENSVKLF-TGSTEKNEVAWNTIIV 381

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
             V  G+ E     + +++ L+ + P+     S L AS+
Sbjct: 382 GYVQLGDGEKALNLFSNMLGLDIQ-PTEVTYSSVLRASA 419


>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1002

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 186/566 (32%), Positives = 304/566 (53%), Gaps = 47/566 (8%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           +  ++  F    A   +++  KQ H+ ++ +G   N  + + ++  Y+  G   + +LVF
Sbjct: 312 SEVSLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVF 371

Query: 79  NSIQ-HKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKD 136
            S+   KD   +N +I+ YV+     +ALE+   M    N+  D  TL+++  L+ + +D
Sbjct: 372 RSMAVLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRD 431

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF------------------------ 172
           + +G  +HG  I+  F  D+ + + ++ MY KCG                          
Sbjct: 432 VKLGKKLHGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGKKKDIVLWNTMLA 491

Query: 173 --------SECLNLFDEMPQR----NVGSWNVRISGHASSGDFSLVVRSRRVFDQMK--- 217
                    E L LF +M       NV SWN  I G   +G    VV ++ +F +M+   
Sbjct: 492 ACAEKGLSGEALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQ---VVEAQDMFSEMQLSG 548

Query: 218 -RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
              N+  WT MI+G  QNG   EA  +F +MQ    + PN +S+ S L  C+++  L+ G
Sbjct: 549 VTPNLITWTTMISGLAQNGLGYEASRVFQQMQ-GAGMRPNSISITSALSACTNMALLNYG 607

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           + IHG+ +R  ++  + +  ++IDMY+KCG+LD A+ VF   S  K+   +++++S Y  
Sbjct: 608 RSIHGYVMRNFMSFSLQITTSIIDMYAKCGNLDDAKFVFIICS-TKELPVYNAMISAYAS 666

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           HGK  EA+ L+ ++V  G  PD IT   VLSAC    L+ EGLE++  ++   ++KP+ +
Sbjct: 667 HGKSAEALALFQELVKQGIMPDHITFTSVLSACSHGRLLKEGLELFKYMVCELQMKPSEK 726

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
              C+V +L   GQLD AL  I TMP  P   I G+L++A   +  +E+ +   K L+++
Sbjct: 727 HYGCLVKLLTNDGQLDEALRIILTMPSPPDAHILGSLLAACGQNHETELANYIAKWLLKV 786

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           EP NP NYV+LSN+YA+  +WD V+ +R  MK++GLKK PGCSWI +  + + F  +DK+
Sbjct: 787 EPNNPGNYVALSNVYAALGKWDEVSNIRGFMKEKGLKKIPGCSWIEVGQELNVFIASDKS 846

Query: 517 HPCSVSIYEMLDDLILIMRGAAASPH 542
           HP    IY++LD L   M  A ++PH
Sbjct: 847 HPEKEEIYKILDLLGFEMYYAKSNPH 872



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 213/475 (44%), Gaps = 43/475 (9%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLG--HISNPFVSTKLITAYALCGQPTQSQLVF-NSI 81
             LQ     R L L  Q H+ ++  G  + +N FV +KL+  YA C     +   F N +
Sbjct: 108 ELLQGCVYARDLSLGLQIHAHLIKKGSSYSTNEFVESKLVILYAKCNLTRVAVHFFRNVV 167

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           ++++++ Y +++    +N  + EAL  +  M      PD+F +    K  G ++ +  G 
Sbjct: 168 KNQNLFSYAAIVGLQARNGLYKEALLSYVEMMEKGFCPDNFVVPNGLKACGGLRWIGFGR 227

Query: 142 LIHGLSIKIGFVVD--VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
            IHG  +K+G   D  V +A SL+ MY KCG   +   +FDEMP R              
Sbjct: 228 GIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDEMPNR-------------- 273

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                             +RN   W +MI GYVQNG   EA+ LF +M+ +  +EP++VS
Sbjct: 274 ------------------KRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVS 315

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           L      C++L  +  GKQ H   I      +  L +++++ YSK G ++    VF   +
Sbjct: 316 LSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMA 375

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEG 378
             KD +TW+ ++S Y   G   +A+ + + M    + + D +T+  +L+    +  +  G
Sbjct: 376 VLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLG 435

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
            +++   I          + + V+DM  + G +D A         +    +W  +++A  
Sbjct: 436 KKLHGFCIRN-EFYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGKKKDIVLWNTMLAACA 494

Query: 439 MHGNSEMQDLAYKSLIQLEPEN-PSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
             G   +   A K   Q++ E+ P N VS ++L     R   V E + M  +  L
Sbjct: 495 EKG---LSGEALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQVVEAQDMFSEMQL 546



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/472 (23%), Positives = 204/472 (43%), Gaps = 106/472 (22%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSI--QHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           +V+T L+  Y  CG    ++ VF+ +  + ++  ++NS+I GYV+N  + EA+ LF  M 
Sbjct: 245 YVATSLVDMYGKCGVLEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMR 304

Query: 114 YSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
           +   V P + +L+        ++ +  G   H L I +GF ++ +L +S+M+ Y K G  
Sbjct: 305 FEGGVEPSEVSLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLI 364

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            E                              LV RS  V      ++   W  MI+ YV
Sbjct: 365 EEV----------------------------ELVFRSMAVL-----KDEVTWNLMISSYV 391

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           Q G  ++AL +   M+ ++ +  + V+L S+L   +    +  GK++HGF IR E   D+
Sbjct: 392 QFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLGKKLHGFCIRNEFYSDM 451

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKD----------------------------- 323
           ++ + ++DMY+KCG +DCAR VF  +   KD                             
Sbjct: 452 AVLSGVLDMYAKCGIMDCARGVFHFAGKKKDIVLWNTMLAACAEKGLSGEALKLFFQMQM 511

Query: 324 ------AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
                  ++W+S++ G+  +G+  EA  ++++M   G  P++IT   ++S   ++GL  E
Sbjct: 512 ESVPPNVVSWNSLIFGFFRNGQVVEAQDMFSEMQLSGVTPNLITWTTMISGLAQNGLGYE 571

Query: 378 GLEIYNSV----INTYRIKPTTEICAC------------------------------VVD 403
              ++  +    +    I  T+ + AC                              ++D
Sbjct: 572 ASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGRSIHGYVMRNFMSFSLQITTSIID 631

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           M  + G LD A  F+  +       ++ A++SA   HG S      ++ L++
Sbjct: 632 MYAKCGNLDDA-KFVFIICSTKELPVYNAMISAYASHGKSAEALALFQELVK 682


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 293/572 (51%), Gaps = 87/572 (15%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L   A+  +  L KQ H   ++   I N FV   L+  YA  G   ++  VF+++
Sbjct: 231 TLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNM 290

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYY--------------------------- 114
             KDV  +N+++ GY +     +A+ LF  M                             
Sbjct: 291 PVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350

Query: 115 --------SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI---KIGFVVDV------- 156
                   S + P++ TL  IS LSG     +VG L+HG  I    I + +D+       
Sbjct: 351 GVCRQMLSSGIKPNEVTL--ISVLSGCA---SVGALMHGKEIHCYAIKYPMDLRKNGHGD 405

Query: 157 --ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
             ++ N L+ MY KC K      +FD +                                
Sbjct: 406 ENMVINQLIDMYAKCKKVDIARAMFDSLSP------------------------------ 435

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGL 273
             K R+V  WT MI GY Q+GD ++AL L  EM  +D +  PN  ++   L  C+SL  L
Sbjct: 436 --KERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAAL 493

Query: 274 SGGKQIHGFAIRKELNH-DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           S GKQIH +A+R + N   + + N LIDMY+KCG +  AR VF D+   K+ +TW+S+++
Sbjct: 494 SIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVF-DNMMEKNEVTWTSLMT 552

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           GYG+HG G EA+ ++ +M  +G K D +T++ VL AC  SG+I++G+E +N +   + + 
Sbjct: 553 GYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVS 612

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           P  E  AC+VD+LGRAG+L+ AL  I+ MP+EP P +W AL+S   +HG  E+ + A K 
Sbjct: 613 PGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKK 672

Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           + +L   N  +Y  LSN+YA++ RW  V  +R++M+ +G+KK PGCSW+     T  F V
Sbjct: 673 ITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFV 732

Query: 513 ADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
            DK HP +  IY++L D +  ++     P  G
Sbjct: 733 GDKTHPHAKEIYQVLSDHMQRIKDIGYVPETG 764



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 232/455 (50%), Gaps = 24/455 (5%)

Query: 8   NTFALVTSRNYT--SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           ++F L+ S ++T  + T     +      S++    SH+     G +SN FV   L+  Y
Sbjct: 113 SSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMY 172

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTL 124
           + CG  + ++ VF+ +   DV  +NS+I  Y K      ALE+FS M       PDD TL
Sbjct: 173 SRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITL 232

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
             +      +   ++G   HG ++    + ++ + N L+ MY K G   E   +F  MP 
Sbjct: 233 VNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPV 292

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEA 240
           ++V SWN  ++G++  G F   V   R+F+QM+    + +V  W+A I+GY Q G   EA
Sbjct: 293 KDVVSWNAMVAGYSQIGRFEDAV---RLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEA 349

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI------RKELNHDVSL 294
           L +  +M L   I+PN+V+L+SVL  C+S+  L  GK+IH +AI      RK  + D ++
Sbjct: 350 LGVCRQM-LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENM 408

Query: 295 C-NALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV- 351
             N LIDMY+KC  +D AR +F+  S   +D +TW+ ++ GY  HG  ++A+ L ++M  
Sbjct: 409 VINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468

Query: 352 --CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
             C  ++P+  TI   L AC     ++ G +I+   +   +      +  C++DM  + G
Sbjct: 469 EDC-QTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCG 527

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            +  A      M +E +   W +L++   MHG  E
Sbjct: 528 DIGDARLVFDNM-MEKNEVTWTSLMTGYGMHGYGE 561



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 204/458 (44%), Gaps = 88/458 (19%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD--VYLYNS 91
           +++   K  H ++LS G I    +++ LI+ Y   G  + +  +       D  VY +NS
Sbjct: 39  KTISQVKLIHQKLLSFG-ILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNS 97

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           LI  Y  N   N+ L  F  M+  + +PD++T   + K  GEI  +  G   H LS   G
Sbjct: 98  LIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTG 157

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F+ +V + N+L++MY +CG  S+   +FDEMP  +V SWN                    
Sbjct: 158 FMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWN-------------------- 197

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                         ++I  Y + G    AL +F +M  +    P+ ++LV+VLP C+S+ 
Sbjct: 198 --------------SIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVG 243

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF---------------- 315
             S GKQ HGFA+  E+  ++ + N L+DMY+K G +D A  VF                
Sbjct: 244 TRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVA 303

Query: 316 ------------------EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
                             ++     D +TWS+ +SGY   G G+EA+ +  +M+  G KP
Sbjct: 304 GYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE-----------ICACVVDMLG 406
           + +T++ VLS C   G +  G EI+      Y IK   +           +   ++DM  
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIH-----CYAIKYPMDLRKNGHGDENMVINQLIDMYA 418

Query: 407 RAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNS 443
           +  ++D A     ++ P E     W  ++     HG++
Sbjct: 419 KCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 179/432 (41%), Gaps = 69/432 (15%)

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           K+H H + + LFS        P      TIS++           LIH   +  G ++ + 
Sbjct: 13  KSHQHLK-VSLFSTSALEITPPFIHKCKTISQVK----------LIHQKLLSFG-ILTLN 60

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           L + L+S Y+  G  S  ++L    P  + G                             
Sbjct: 61  LTSHLISTYISLGCLSHAVSLLRRFPPSDAG----------------------------- 91

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
              VY W ++I  Y  NG  ++ L  F  M       P+  +   V   C  +  +  G 
Sbjct: 92  ---VYHWNSLIRSYGNNGRANKCLSSFCLMH-SLSWTPDNYTFPFVFKACGEISSVRCGD 147

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
             H  +       +V + NAL+ MYS+CGSL  AR+VF++     D ++W+SI+  Y   
Sbjct: 148 SSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPV-WDVVSWNSIIESYAKL 206

Query: 338 GKGHEAVLLYNKMVC-LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           GK   A+ +++KM    G +PD IT+V VL  C   G  + G + +   + +  I+    
Sbjct: 207 GKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQ-NMF 265

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           +  C+VDM  + G +D A      MPV+   S W A+V+     G  E    A +   Q+
Sbjct: 266 VGNCLVDMYAKFGMMDEANTVFSNMPVKDVVS-WNAMVAGYSQIGRFED---AVRLFEQM 321

Query: 457 EPENPSNYV-----SLSNLYASSRRWDAVAELRTMMKDRGLKKSP--------GCSWIS- 502
           + E     V     ++S        ++A+   R M+   G+K +         GC+ +  
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS-GIKPNEVTLISVLSGCASVGA 380

Query: 503 -IHGKT-HCFSV 512
            +HGK  HC+++
Sbjct: 381 LMHGKEIHCYAI 392


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/519 (32%), Positives = 296/519 (57%), Gaps = 11/519 (2%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           +  A    L + K+ H   +  G   +  +   LI  +  C     ++ VF+ +  KDV 
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            + S+   YV      + + LF  M  + +  +  T+++I     +   + +G  +HG  
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY--IKLGREVHGFI 202

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           ++     +V ++++L++MY       +   +FD M  R++ SWNV ++ +  + ++    
Sbjct: 203 LRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYE--- 259

Query: 208 RSRRVFDQMKRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
           R   +F QM++     N  +W A I+G +QNG  + AL +  +MQ    I+PN++++VS 
Sbjct: 260 RGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQ-DSGIKPNRITIVSA 318

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           LP C++L  L GGK+IHG+  R     DV++  AL+ +Y+KCG L+ +R VF ++   KD
Sbjct: 319 LPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVF-NTMPRKD 377

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            + W++++    +HGKG E+++L+NKM+  G +P+ +T +GVLS C  S L +EGL ++N
Sbjct: 378 VVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFN 437

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           S+ + + I P  +  +C+VD+L RAG+L+ A DFI+ MP+EP+ + WGAL+ A  ++ N 
Sbjct: 438 SMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNV 497

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           E+  LA   L ++EP+N  NYV LSN+  ++++W   +E+R MM+D+GL K+PG SW+ +
Sbjct: 498 ELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQV 557

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
             K + F   DK++     IY  LD++   MR     P+
Sbjct: 558 KNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPN 596



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 197/422 (46%), Gaps = 75/422 (17%)

Query: 55  PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY 114
           P  S KLI      G   ++  +F+ I   D+  +  LI+G+ ++    +A++++S +  
Sbjct: 11  PCQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLS 70

Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
            NV PD F L +++K      DL V   IH  +I+ GF  D++L N+L+ M+ KC   + 
Sbjct: 71  RNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNG 130

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
              +FD+M                       VV           ++V +WT+M   YV  
Sbjct: 131 ARCVFDDM-----------------------VV-----------KDVVSWTSMTYCYVNC 156

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G   + ++LF EM L + I  N +++ S+LP C+  I L  G+++HGF +R E+  +V +
Sbjct: 157 GMCRQGILLFREMGL-NGIRANSLTVSSILPACADYIKL--GREVHGFILRNEMEGNVYV 213

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV--- 351
            +AL++MY+    L  AR VF DS +++D ++W+ +++ Y L+ +    + L+++M    
Sbjct: 214 SSALVNMYASSLGLKQARLVF-DSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEG 272

Query: 352 --------------CL------------------GSKPDIITIVGVLSACGRSGLINEGL 379
                         C+                  G KP+ ITIV  L  C     +  G 
Sbjct: 273 IKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGK 332

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           EI+  V   + I+  T I   +V +  + G L+ +     TMP +   + W  ++ A+ M
Sbjct: 333 EIHGYVFRHWFIEDVT-ITTALVLLYAKCGDLELSRHVFNTMPRKDVVA-WNTMIMANSM 390

Query: 440 HG 441
           HG
Sbjct: 391 HG 392



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 128/246 (52%), Gaps = 9/246 (3%)

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
           +SGD     R+  +FD++   ++  WT +I+G+ Q+G   +A+ ++  + L   + P+K 
Sbjct: 23  NSGDLK---RALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTL-LSRNVRPDKF 78

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
            L+SV   C++   L   K+IH  AI+   N D+ L NALIDM+ KC  ++ AR VF+D 
Sbjct: 79  VLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDM 138

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              KD ++W+S+   Y   G   + +LL+ +M   G + + +T+  +L AC  +  I  G
Sbjct: 139 VV-KDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC--ADYIKLG 195

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
            E++  ++    ++    + + +V+M   +  L +A     +M      S W  +++A  
Sbjct: 196 REVHGFILRN-EMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVS-WNVMLTAYF 253

Query: 439 MHGNSE 444
           ++   E
Sbjct: 254 LNKEYE 259


>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 166/468 (35%), Positives = 275/468 (58%), Gaps = 9/468 (1%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +++H+  L  G   + + ++ L+  Y + G+   ++ VF+ +  + V ++N ++  YV+ 
Sbjct: 66  RKAHAATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRC 125

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI-GFVVDVIL 158
             + EA+ L   M    ++PD  TL T         DL++G  IH     + GF + V  
Sbjct: 126 GRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPV-- 183

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
           AN+L+ MYVK G   E +NLF++MP RNV SW   +SG+A +G    V ++R +F Q   
Sbjct: 184 ANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQ---VDKARLLFHQCTE 240

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           +++  WTAMIN YVQ+G   EAL LF +MQ+  +IEP++ ++V++L  C++L  L  G+ 
Sbjct: 241 KDLIMWTAMINAYVQHGCFIEALSLFRDMQMH-QIEPDRFTVVTLLTCCANLGALDQGQL 299

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           IH FA  + +  D  L  ALIDMY+KCG ++ +  VFE     +D   W++I+ G   +G
Sbjct: 300 IHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERME-GRDTKAWTAIICGLATNG 358

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           +   A+ L+  M    +KPD +T +GVLSAC   GL++EG + + ++   YRI+P  E  
Sbjct: 359 QAGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHY 418

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
           +C+V++LGRAGQLD A   IK++P+ + +  ++GAL++A    GN +M +   K + +  
Sbjct: 419 SCLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQG 478

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            + P   + +SN+YA++ RW+ V  +R+ M    +KK+ GCS I + G
Sbjct: 479 YQIPDVNLLMSNVYATASRWEDVVRVRSKMAHPSVKKNAGCSLIEVKG 526



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 164/384 (42%), Gaps = 68/384 (17%)

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N LI    +   H + + ++ ++    +  D FT   + +  G ++    G   H  ++K
Sbjct: 15  NLLIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATLK 74

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            GF  D   A+SLM MY   G+      +FDEMPQR V  WN+                 
Sbjct: 75  TGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNM----------------- 117

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
                            M+  YV+ G   EA+ L  EM+ + R+ P++V+L++ L  CS 
Sbjct: 118 -----------------MLRCYVRCGRNTEAVALAEEME-RGRLTPDRVTLLTALTACSR 159

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED------------ 317
              LS G++IH + +       + + NAL+DMY K G L+ A  +FE             
Sbjct: 160 AGDLSLGRKIHAY-MDGVTGFSLPVANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTL 218

Query: 318 ------------------SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
                                 KD I W+++++ Y  HG   EA+ L+  M     +PD 
Sbjct: 219 VSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDR 278

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
            T+V +L+ C   G +++G ++ +       +K    +   ++DM  + G ++++++  +
Sbjct: 279 FTVVTLLTCCANLGALDQG-QLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFE 337

Query: 420 TMPVEPSPSIWGALVSASVMHGNS 443
            M    + + W A++     +G +
Sbjct: 338 RMEGRDTKA-WTAIICGLATNGQA 360


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/491 (34%), Positives = 273/491 (55%), Gaps = 8/491 (1%)

Query: 43  HSQILSLGHISNP-FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101
           H   L  G +     V   L+  YA       +  VF+ +  +DV  + +L++GY +   
Sbjct: 165 HCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGL 224

Query: 102 HNEALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
            +EA  LF  M     + P+  TL       G++  L  G+++H    + G    V L N
Sbjct: 225 ADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDN 284

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
           +L+ M+ KCG       +FD M  ++V SW   ++ +A  GD      + ++F  M RRN
Sbjct: 285 ALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLE---SAEQLFKDMPRRN 341

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
           V +W+ MI  Y Q    +EA+ LF EM +   ++P   +LVSVL  C+ L  L  G+ I+
Sbjct: 342 VVSWSCMIAAYSQLNQPEEAVWLFREM-IAAGVDPIDATLVSVLSACAQLGCLDLGRWIY 400

Query: 281 -GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
             + +  ++   V+L NALIDM++KCG +  A ++F++ +  ++ ++W++++  + +HG+
Sbjct: 401 ENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMA-ERNVVSWNTMIMAHAVHGQ 459

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+ L+ ++      PD IT +G+L++C  SGL++EG   +  +   YRI+P  E  A
Sbjct: 460 SEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYA 519

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C++D+LG+ G L+ A +  + MP+E   + WGAL++A  MHGN E+       L++L+P 
Sbjct: 520 CMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPS 579

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           +   YV +S +YAS  +WD V  LR  M+DRG+KK+PGCS I + GK H F VAD +H C
Sbjct: 580 DSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLVADVSHAC 639

Query: 520 SVSIYEMLDDL 530
           S  IY  L ++
Sbjct: 640 SEEIYSALKNI 650


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/447 (35%), Positives = 256/447 (57%), Gaps = 12/447 (2%)

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           +D ++ N+LI+ Y KN G ++A ++F  M   +V   +  +A + +  GE+       + 
Sbjct: 234 EDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVR-QGEVDAARS--MF 290

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
             +  K     D +  N+++  Y K G+  +   LF  MP RNV SW+  +S +   GD 
Sbjct: 291 DEMPEK-----DTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDM 345

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
            +   +R +FD+M  +N+  WT M++   Q G ++EA  LF EM +   IE + +++VS+
Sbjct: 346 EM---ARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEM-MDAAIELDVIAVVSI 401

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           L  C+    L+ GK+IH    +++L+    +CNAL+DM+ KCG ++ A  +F+     KD
Sbjct: 402 LAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKD 461

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            ++W+ I+ G+ +HG G +A+ L+ +M   G  PD +T++ VLSAC   GL+ EG   + 
Sbjct: 462 LVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFA 521

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           ++   Y IKP  E   C+VD+LGR G +  A+D IK MP EP+  IWG+L+SA  +H N 
Sbjct: 522 NMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNV 581

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           E  +LA   L  L+P +  NY  LSN+YA + +W  +A+ R  MK  G +K+ G SWI +
Sbjct: 582 EYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIEL 641

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDL 530
           +   H F+V D+ HP S  I +M+D L
Sbjct: 642 NEAFHEFTVGDRKHPESDQISDMIDRL 668


>gi|224099993|ref|XP_002311701.1| predicted protein [Populus trichocarpa]
 gi|222851521|gb|EEE89068.1| predicted protein [Populus trichocarpa]
          Length = 278

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 153/240 (63%), Positives = 186/240 (77%), Gaps = 7/240 (2%)

Query: 173 SECLNLFD-EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
           S  L+L D +M +RN G     + G     + +L    RRVFD MK  NVY WTAMINGY
Sbjct: 44  SSLLSLRDGDMVKRNYGR---ELRGFIVRNELAL---GRRVFDSMKGGNVYTWTAMINGY 97

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
           V+NG L+E LVLF E+Q++D +E  KVSLVSVLP CS++ GL G KQIHG+AI+KE N D
Sbjct: 98  VKNGSLEEGLVLFQEIQVRDEVELIKVSLVSVLPACSAVSGLIGVKQIHGYAIKKEFNDD 157

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           VSLCNALI  YSKCGSLD A++VFE  SF++D I+WSS++SGYGL GKG EA+ +YNKM+
Sbjct: 158 VSLCNALIGTYSKCGSLDHAKQVFEHGSFHRDPISWSSMISGYGLQGKGEEAIFVYNKML 217

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
            LG+K D+ITIVGVLSACGRSGL++EGL IY S IN YRIKPT EICACVV+M+GR+GQL
Sbjct: 218 HLGNKSDMITIVGVLSACGRSGLVDEGLRIYKSTINEYRIKPTVEICACVVNMIGRSGQL 277



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 36/234 (15%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLATISKLSGEIK 135
           VF+S++  +VY + ++INGYVKN    E L LF  +   + V     +L ++      + 
Sbjct: 78  VFDSMKGGNVYTWTAMINGYVKNGSLEEGLVLFQEIQVRDEVELIKVSLVSVLPACSAVS 137

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
            L     IHG +IK  F  DV L N+L+  Y KCG       +F+               
Sbjct: 138 GLIGVKQIHGYAIKKEFNDDVSLCNALIGTYSKCGSLDHAKQVFEH-------------- 183

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                G F               R+  +W++MI+GY   G  +EA+ ++ +M L    + 
Sbjct: 184 -----GSF--------------HRDPISWSSMISGYGLQGKGEEAIFVYNKM-LHLGNKS 223

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSL 308
           + +++V VL  C     +  G +I+   I +  +   V +C  +++M  + G L
Sbjct: 224 DMITIVGVLSACGRSGLVDEGLRIYKSTINEYRIKPTVEICACVVNMIGRSGQL 277



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 119/265 (44%), Gaps = 38/265 (14%)

Query: 227 MINGYVQNGDL--DEALVLFLEMQLKDRIEPNKVSLVSVLP-TCSSLIGLSGGKQIHGFA 283
           +I+GY  +GDL  D+ +  F++    + ++P+ +++ S+L      ++  + G+++ GF 
Sbjct: 8   IISGYADSGDLNFDKDMSDFVKDMQIEGLKPDVITVSSLLSLRDGDMVKRNYGRELRGFI 67

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           +R EL        AL             RRVF DS    +  TW+++++GY  +G   E 
Sbjct: 68  VRNEL--------AL------------GRRVF-DSMKGGNVYTWTAMINGYVKNGSLEEG 106

Query: 344 VLLYNKMVCLGSKPDI-ITIVGVLSACGR-SGLINEGLEIYNSVINTYRIKPT----TEI 397
           ++L+ ++        I +++V VL AC   SGLI          I+ Y IK        +
Sbjct: 107 LVLFQEIQVRDEVELIKVSLVSVLPACSAVSGLIGV------KQIHGYAIKKEFNDDVSL 160

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
           C  ++    + G LD A    +       P  W +++S   + G  E     Y  ++ L 
Sbjct: 161 CNALIGTYSKCGSLDHAKQVFEHGSFHRDPISWSSMISGYGLQGKGEEAIFVYNKMLHL- 219

Query: 458 PENPSNYVSLSNLYASSRRWDAVAE 482
             N S+ +++  + ++  R   V E
Sbjct: 220 -GNKSDMITIVGVLSACGRSGLVDE 243


>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Vitis vinifera]
          Length = 868

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 174/521 (33%), Positives = 279/521 (53%), Gaps = 11/521 (2%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILS-LGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           S T+   L   A   +L++ K  H  I+   G   +  V   L++ YA C     +   F
Sbjct: 349 SVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTF 408

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
             I  KD+  +N++++ + ++      + L   M    + PD  T+ TI +    +  + 
Sbjct: 409 LMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVK 468

Query: 139 VGMLIHGLSIKIGFV---VDVILANSLMSMYVKCGKFSECLNLFDEMPQ-RNVGSWNVRI 194
                H  SI+ G +       L N ++  Y KCG     +N+F  + + RNV + N  I
Sbjct: 469 KVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMI 528

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           SG+ +S        +  +F+ M   ++  W  M+  Y +N   D+AL LF E+Q +  ++
Sbjct: 529 SGYVNSSSHD---DAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQG-MK 584

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+ V+++S+LP C+ +  +   +Q HG+ IR   N DV L  A IDMYSKCGS+  A ++
Sbjct: 585 PDIVTIMSILPACAHMASVHMLRQCHGYVIRACFN-DVRLNGAFIDMYSKCGSVFGAYKL 643

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F  SS  KD + ++++V G+ +HG G EA+ +++ M+ LG KPD + I  VL AC  +GL
Sbjct: 644 FL-SSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGL 702

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++EG +I+NS+   +  +PT E  ACVVD+L R G++  A  F+  MP+E + +IWG L+
Sbjct: 703 VDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLL 762

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
            A   H   E+  +    L ++E +N  NYV +SNLYA+  RWD V E+R +M+ R LKK
Sbjct: 763 GACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDGVMEIRRLMRTRELKK 822

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
             GCSWI +  + + F   D +HP    IY  L  L  +M+
Sbjct: 823 PAGCSWIEVGRRKNVFIAGDSSHPQRSIIYRTLSTLDQLMK 863



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 135/524 (25%), Positives = 232/524 (44%), Gaps = 60/524 (11%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           +V      S T+   L V A  R     K  HS ++  G  S+      LI+ YA CG  
Sbjct: 134 MVNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLV 192

Query: 72  -TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
            + +   FN I+ KDV  +N++I G+ +N    EA +LF  M    + P+  T+A+I  +
Sbjct: 193 CSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPV 252

Query: 131 SGEIKD---LNVGMLIHGLSIK-IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
              +++      G  +H   ++ +  V DV + NSLMS Y++ G+               
Sbjct: 253 CASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQME------------- 299

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
                                ++  +F  MK R++ +W A+I GY  NG+  +AL LF E
Sbjct: 300 ---------------------KAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSE 338

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKC 305
               + I+P+ V+LVSVLP C+ +  L   K IHG+ IR   L  D S+ NAL+  Y+KC
Sbjct: 339 FISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKC 398

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
                A + F   S  KD I+W++I+  +   G     V L + M+  G +PD ITI+ +
Sbjct: 399 NYTQAALQTFLMIS-RKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTI 457

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIK----PTTEICACVVDMLGRAGQLDRALDFIKTM 421
           +        + +  E ++  I    ++    PT  +   ++D   + G +  A++   ++
Sbjct: 458 IQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPT--LGNGMLDAYAKCGNMKYAVNIFGSL 515

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
             + +     +++S  V   NS   D AY     +   + + +  +  +YA +   D   
Sbjct: 516 SEKRNVVTCNSMISGYV---NSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQAL 572

Query: 482 ELRTMMKDRGLKKS--------PGCSWI-SIHGKTHCFSVADKA 516
            L   ++ +G+K          P C+ + S+H    C     +A
Sbjct: 573 SLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRA 616



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 159/381 (41%), Gaps = 46/381 (12%)

Query: 102 HNEALELFSNMYYSNV--SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
           H+EAL LF      +V   P+   LA + K    I  +  G ++HG ++K+G V    L 
Sbjct: 18  HDEALSLFLERVRCSVGYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSLC 77

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
             L+++Y K G    C  LF EM Q                                  R
Sbjct: 78  KGLLNLYAKSGALDYCNKLFGEMDQ----------------------------------R 103

Query: 220 NVYAWTAMINGYVQNGDLD-EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           +   W  +++G       + E + LF  M + +  +PN V++  VLP C+ L     GK 
Sbjct: 104 DPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLRE-DAGKS 162

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDC--ARRVFEDSSFNKDAITWSSIVSGYGL 336
           +H + I+  L       NALI MY+KCG L C  A   F    F KD ++W+++++G+  
Sbjct: 163 VHSYVIKSGLESHTLAGNALISMYAKCG-LVCSDAYAAFNRIEF-KDVVSWNAVIAGFSE 220

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG---RSGLINEGLEIYNSVINTYRIKP 393
           +    EA  L++ M+    +P+  TI  +L  C     +     G E++  V+    +  
Sbjct: 221 NKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVE 280

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
              +   ++    R GQ+++A    + M      S W A+++    +G        +   
Sbjct: 281 DVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVS-WNAIIAGYASNGEWLKALELFSEF 339

Query: 454 IQLEPENPSNYVSLSNLYASS 474
           I LE   P +   +S L A +
Sbjct: 340 ISLETIKPDSVTLVSVLPACA 360


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 190/572 (33%), Positives = 294/572 (51%), Gaps = 87/572 (15%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L   A+  +  L KQ H   ++   I N FV   L+  YA CG   ++  VF+++
Sbjct: 231 TLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNM 290

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFS------------------------------- 110
             KDV  +N+++ GY +     +A+ LF                                
Sbjct: 291 SVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350

Query: 111 ----NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI---KIGFVVDV------- 156
                M  S + P++ TL  IS LSG     +VG L+HG  I    I + +D+       
Sbjct: 351 GVCRQMLSSGIKPNEVTL--ISVLSG---CASVGALMHGKEIHCYAIKYPIDLRKNGHGD 405

Query: 157 --ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
             ++ N L+ MY KC K      +FD +                                
Sbjct: 406 ENMVINQLIDMYAKCKKVDTARAMFDSLSP------------------------------ 435

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGL 273
             K R+V  WT MI GY Q+GD ++AL L  EM  +D +  PN  ++   L  C+SL  L
Sbjct: 436 --KERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAAL 493

Query: 274 SGGKQIHGFAIRKELNH-DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
             GKQIH +A+R + N   + + N LIDMY+KCGS+  AR VF D+   K+ +TW+S+++
Sbjct: 494 RIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF-DNMMAKNEVTWTSLMT 552

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           GYG+HG G EA+ ++++M  +G K D +T++ VL AC  SG+I++G+E +N +   + + 
Sbjct: 553 GYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVS 612

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           P  E  AC+VD+LGRAG+L+ AL  I+ MP+EP P +W A +S   +HG  E+ + A + 
Sbjct: 613 PGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEK 672

Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           + +L   +  +Y  LSNLYA++ RW  V  +R++M+ +G+KK PGCSW+     T  F V
Sbjct: 673 ITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFV 732

Query: 513 ADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
            DK HP +  IY++L D +  ++     P  G
Sbjct: 733 GDKTHPHAKEIYQVLLDHMQRIKDIGYVPETG 764



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 229/453 (50%), Gaps = 24/453 (5%)

Query: 10  FALVTSRNYT--SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
           F L+ S ++T  + T     +      S++  + +H+  L  G ISN FV   L+  Y+ 
Sbjct: 115 FGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSR 174

Query: 68  CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLAT 126
           C   + ++ VF+ +   DV  +NS+I  Y K      ALE+FS M       PD+ TL  
Sbjct: 175 CRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVN 234

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +      +   ++G  +H  ++    + ++ + N L+ MY KCG   E   +F  M  ++
Sbjct: 235 VLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKD 294

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALV 242
           V SWN  ++G++  G F   V   R+F++M+    + +V  W+A I+GY Q G   EAL 
Sbjct: 295 VVSWNAMVAGYSQIGRFEDAV---RLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALG 351

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI------RKELNHDVSLC- 295
           +  +M L   I+PN+V+L+SVL  C+S+  L  GK+IH +AI      RK  + D ++  
Sbjct: 352 VCRQM-LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI 410

Query: 296 NALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV--- 351
           N LIDMY+KC  +D AR +F+  S   +D +TW+ ++ GY  HG  ++A+ L ++M    
Sbjct: 411 NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
           C  ++P+  TI   L AC     +  G +I+   +   +      +  C++DM  + G +
Sbjct: 471 C-QTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
             A      M +  +   W +L++   MHG  E
Sbjct: 530 SDARLVFDNM-MAKNEVTWTSLMTGYGMHGYGE 561



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 205/454 (45%), Gaps = 80/454 (17%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD--VYLYNS 91
           +++   K  H ++LS G I    +++ LI+ Y   G  + +  +       D  VY +NS
Sbjct: 39  KTISQVKLIHQKLLSFG-ILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNS 97

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           LI  Y  N   N+ L LF  M+  + +PD++T   + K  GEI  +  G   H LS+  G
Sbjct: 98  LIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTG 157

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F+ +V + N+L++MY +C   S+   +FDEM   +V SWN                    
Sbjct: 158 FISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWN-------------------- 197

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
                         ++I  Y + G    AL +F  M  +    P+ ++LV+VLP C+SL 
Sbjct: 198 --------------SIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS------------ 319
             S GKQ+H FA+  E+  ++ + N L+DMY+KCG +D A  VF + S            
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303

Query: 320 --------------FNK--------DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
                         F K        D +TWS+ +SGY   G G+EA+ +  +M+  G KP
Sbjct: 304 GYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK-------PTTEICACVVDMLGRAGQ 410
           + +T++ VLS C   G +  G EI+   I  Y I            +   ++DM  +  +
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIHCYAIK-YPIDLRKNGHGDENMVINQLIDMYAKCKK 422

Query: 411 LDRALDFIKTM-PVEPSPSIWGALVSASVMHGNS 443
           +D A     ++ P E     W  ++     HG++
Sbjct: 423 VDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 168/385 (43%), Gaps = 52/385 (13%)

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           LIH   +  G ++ + L + L+S Y+  G  S  ++L    P  + G             
Sbjct: 46  LIHQKLLSFG-ILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAG------------- 91

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                              VY W ++I  Y  NG  ++ L LF  M       P+  +  
Sbjct: 92  -------------------VYHWNSLIRSYGDNGCANKCLYLFGLMH-SLSWTPDNYTFP 131

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
            V   C  +  +  G+  H  ++      +V + NAL+ MYS+C SL  AR+VF++ S  
Sbjct: 132 FVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSV- 190

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGVLSACGRSGLINEGLE 380
            D ++W+SI+  Y   GK   A+ ++++M    G +PD IT+V VL  C   G  + G +
Sbjct: 191 WDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ 250

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           ++   + +  I+    +  C+VDM  + G +D A      M V+   S W A+V+     
Sbjct: 251 LHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVS-WNAMVAGYSQI 308

Query: 441 GNSEMQDLAYKSLIQ--LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP-- 496
           G  E     ++ + +  ++ +  +   ++S        ++A+   R M+   G+K +   
Sbjct: 309 GRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS-GIKPNEVT 367

Query: 497 ------GCSWIS--IHGKT-HCFSV 512
                 GC+ +   +HGK  HC+++
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAI 392


>gi|242036089|ref|XP_002465439.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
 gi|241919293|gb|EER92437.1| hypothetical protein SORBIDRAFT_01g038860 [Sorghum bicolor]
          Length = 596

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 163/478 (34%), Positives = 262/478 (54%), Gaps = 9/478 (1%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L  S    S  +  + H+  +  G   + FVS  LITAYA  G    ++ VF+ +  +DV
Sbjct: 123 LAESGPRLSALVAAEFHAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDKMPQRDV 182

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMY----YSNVSPDDFTLATISKLSGEIKDLNVGML 142
             +NSLI+ Y +   + E LELF  +        V P+  T+A+I     ++K ++ G+ 
Sbjct: 183 VSWNSLISAYARAGWYRECLELFQELASVHGAGGVRPNSVTVASILHACAQLKAIDYGVR 242

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H  + + G  +DV + NS +  Y KCGK      LF+ MP+++  S++  I+G+ + G 
Sbjct: 243 VHRFAAENGLDMDVAVWNSTVGFYAKCGKLQYARELFERMPKKDAVSYSAMITGYMNHGH 302

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V +   +F +   + +  W A+I G VQNG   E L L  EM +   I PN  +L  
Sbjct: 303 ---VDKGMELFQRSDAQGISIWNAVIAGLVQNGRQSEVLGLLNEM-IGSGILPNSATLSI 358

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           ++P+      L G KQ HG+AIR   +  +S+  ALID YSK G LD + RVF+ S+ ++
Sbjct: 359 IIPSVHLFSTLLGVKQAHGYAIRNNYDQSISVVTALIDAYSKAGFLDGSLRVFK-STGDR 417

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
             I W+SI+S    HG+  EA+ L+N+M     +PD I    VL+AC  +G + +  +++
Sbjct: 418 SKIVWTSIISAVAAHGEAAEALCLFNEMANARIRPDTIAFTAVLTACAYTGKVADARKVF 477

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           NS+   + I P  E  AC+V    RAG L  AL+ + +MP EP+  +WG L++ +   G+
Sbjct: 478 NSMQVLFGINPVMEQYACMVSAFSRAGMLKDALELVNSMPFEPNAKVWGPLLNGAAEFGD 537

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
            E+    +  L  +EP+N  NY+ ++NLY+++ +W+    +R+MM   GL+K PGCSW
Sbjct: 538 VELGRFVFDRLFIIEPKNTGNYIVMANLYSNAGKWEEAEIIRSMMWGVGLEKVPGCSW 595



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 215/456 (47%), Gaps = 76/456 (16%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H +Q+ A    L   +Q H+++++L    + F+++KLI+ Y+  G+   ++ VF++I   
Sbjct: 19  HLIQLCADSGHLAAGRQLHARLIALSVTPSNFLASKLISLYSRTGRLDDARRVFDAIPRP 78

Query: 85  DVYLYNS-LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK---LSGEIKDLNVG 140
            V+ +N+ LI   + +   + A+  F+    S +SPD+ TL+ + K    SG      V 
Sbjct: 79  SVFAWNAILIALSLHSPDPSAAVRFFAA---SGISPDEITLSALLKSLAESGPRLSALVA 135

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
              H ++++ GF  D+ ++N L++ Y   G       +FD+MPQR+V SWN         
Sbjct: 136 AEFHAVAVQRGFGDDLFVSNGLITAYANAGDSRSARAVFDKMPQRDVVSWN--------- 186

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM---QLKDRIEPNK 257
                                    ++I+ Y + G   E L LF E+        + PN 
Sbjct: 187 -------------------------SLISAYARAGWYRECLELFQELASVHGAGGVRPNS 221

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           V++ S+L  C+ L  +  G ++H FA    L+ DV++ N+ +  Y+KCG L  AR +FE 
Sbjct: 222 VTVASILHACAQLKAIDYGVRVHRFAAENGLDMDVAVWNSTVGFYAKCGKLQYARELFER 281

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK---------------MVCLGSKPDIITI 362
               KDA+++S++++GY  HG   + + L+ +               +V  G + +++ +
Sbjct: 282 MP-KKDAVSYSAMITGYMNHGHVDKGMELFQRSDAQGISIWNAVIAGLVQNGRQSEVLGL 340

Query: 363 V------GVLSACGRSGLINEGLEIYNSVINT-----YRIK----PTTEICACVVDMLGR 407
           +      G+L       +I   + ++++++       Y I+     +  +   ++D   +
Sbjct: 341 LNEMIGSGILPNSATLSIIIPSVHLFSTLLGVKQAHGYAIRNNYDQSISVVTALIDAYSK 400

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           AG LD +L   K+   + S  +W +++SA   HG +
Sbjct: 401 AGFLDGSLRVFKSTG-DRSKIVWTSIISAVAAHGEA 435



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 153/346 (44%), Gaps = 21/346 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S TV   L   A  +++    + H      G   +  V    +  YA CG+   ++ +F 
Sbjct: 221 SVTVASILHACAQLKAIDYGVRVHRFAAENGLDMDVAVWNSTVGFYAKCGKLQYARELFE 280

Query: 80  SIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATI------SKLSG 132
            +  KD   Y+++I GY+ NHGH ++ +ELF       +S  +  +A +      S++ G
Sbjct: 281 RMPKKDAVSYSAMITGYM-NHGHVDKGMELFQRSDAQGISIWNAVIAGLVQNGRQSEVLG 339

Query: 133 EIKDL-NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
            + ++   G+L +  ++ I  +  V L ++L+   VK        N +D+    ++    
Sbjct: 340 LLNEMIGSGILPNSATLSI-IIPSVHLFSTLLG--VKQAHGYAIRNNYDQ----SISVVT 392

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
             I  ++ +G    +  S RVF     R+   WT++I+    +G+  EAL LF EM    
Sbjct: 393 ALIDAYSKAG---FLDGSLRVFKSTGDRSKIVWTSIISAVAAHGEAAEALCLFNEMA-NA 448

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQI-HGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           RI P+ ++  +VL  C+    ++  +++ +   +   +N  +     ++  +S+ G L  
Sbjct: 449 RIRPDTIAFTAVLTACAYTGKVADARKVFNSMQVLFGINPVMEQYACMVSAFSRAGMLKD 508

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           A  +     F  +A  W  +++G    G       +++++  +  K
Sbjct: 509 ALELVNSMPFEPNAKVWGPLLNGAAEFGDVELGRFVFDRLFIIEPK 554



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           + P+  +   ++  C+    L+ G+Q+H   I   +     L + LI +YS+ G LD AR
Sbjct: 10  VPPDPRAYGHLIQLCADSGHLAAGRQLHARLIALSVTPSNFLASKLISLYSRTGRLDDAR 69

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           RVF D+        W++I+    LH     A + +      G  PD IT+  +L +   S
Sbjct: 70  RVF-DAIPRPSVFAWNAILIALSLHSPDPSAAVRF--FAASGISPDEITLSALLKSLAES 126

Query: 373 G 373
           G
Sbjct: 127 G 127


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 173/518 (33%), Positives = 277/518 (53%), Gaps = 39/518 (7%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTK--QSHSQILSLGHISNPFVSTK 60
              A   F L+    +   +V     +S+  R L L +  + H ++++ G + + F+S+ 
Sbjct: 188 FKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA 247

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L+  Y  CG    +  VF  +  K V  +NS+I+GY         ++LF  MY   V P 
Sbjct: 248 LVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPT 307

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
             TL+++  +      L  G  +HG +I+     DV + +SLM +Y KCGK     N+F 
Sbjct: 308 LTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFK 367

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            +P+  V S                                  W  MI+GYV  G L EA
Sbjct: 368 LIPKSKVVS----------------------------------WNVMISGYVAEGKLFEA 393

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF EM+ K  +EP+ ++  SVL  CS L  L  G++IH   I K+L+++  +  AL+D
Sbjct: 394 LGLFSEMR-KSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLD 452

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY+KCG++D A  VF+     +D ++W+S+++ YG HG+ + A+ L+ +M+    KPD +
Sbjct: 453 MYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRV 511

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T + +LSACG +GL++EG   +N ++N Y I P  E  +C++D+LGRAG+L  A + ++ 
Sbjct: 512 TFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571

Query: 421 MP-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            P +     +   L SA  +H N ++     ++LI  +P++ S Y+ LSN+YAS+ +WD 
Sbjct: 572 NPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDE 631

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           V  +R+ MK+ GLKK+PGCSWI I+ K   F V D +H
Sbjct: 632 VRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSH 669



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 211/418 (50%), Gaps = 40/418 (9%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK- 84
            L+     +SLK  K  H ++++LG  ++ F+   LI  Y  C     ++ VF+++++  
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPC 68

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNM-YYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           ++ L+N L+ GY KN+ + EALELF  + +Y  + PD +T  ++ K  G +    +G +I
Sbjct: 69  EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMI 128

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H   +K G ++D+++ +SL+ MY KC  F + + LF+EMP+++V  WN  IS +  SG+F
Sbjct: 129 HTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNF 188

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                +   F  M+R                                   EPN V++ + 
Sbjct: 189 K---EALEYFGLMRRFG--------------------------------FEPNSVTITTA 213

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           + +C+ L+ L+ G +IH   I      D  + +AL+DMY KCG L+ A  VFE     K 
Sbjct: 214 ISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMP-KKT 272

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            + W+S++SGYGL G     + L+ +M   G KP + T+  ++  C RS  + EG  ++ 
Sbjct: 273 VVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHG 332

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             I   RI+    I + ++D+  + G+++ A +  K +P     S W  ++S  V  G
Sbjct: 333 YTIRN-RIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVS-WNVMISGYVAEG 388



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 207/419 (49%), Gaps = 40/419 (9%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L K  H+ ++  G + +  V + L+  YA C    ++  +FN +  KDV  +N++I+ Y 
Sbjct: 124 LGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYY 183

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           ++    EALE F  M      P+  T+ T       + DLN GM IH   I  GF++D  
Sbjct: 184 QSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSF 243

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD-FSLVVRSRRVFDQM 216
           ++++L+ MY KCG     + +F++MP++ V +WN  ISG+   GD  S +   +R++++ 
Sbjct: 244 ISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNE- 302

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
                                               ++P   +L S++  CS    L  G
Sbjct: 303 -----------------------------------GVKPTLTTLSSLIMVCSRSARLLEG 327

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K +HG+ IR  +  DV + ++L+D+Y KCG ++ A  +F+    +K  ++W+ ++SGY  
Sbjct: 328 KFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSK-VVSWNVMISGYVA 386

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
            GK  EA+ L+++M     +PD IT   VL+AC +   + +G EI+N +I   ++     
Sbjct: 387 EGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEK-KLDNNEV 445

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           +   ++DM  + G +D A    K +P     S W ++++A   HG + +    +  ++Q
Sbjct: 446 VMGALLDMYAKCGAVDEAFSVFKCLPKRDLVS-WTSMITAYGSHGQAYVALELFAEMLQ 503



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 38/310 (12%)

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
           K L  G LIH   + +G   D+ L  +L+++Y+ C       +L+D              
Sbjct: 17  KSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSC-------HLYD-------------- 55

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRR-NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
             HA           + VFD M+    +  W  ++ GY +N    EAL LF ++     +
Sbjct: 56  --HA-----------KCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYL 102

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           +P+  +  SVL  C  L     GK IH   ++  L  D+ + ++L+ MY+KC + + A  
Sbjct: 103 KPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIW 162

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           +F +    KD   W++++S Y   G   EA+  +  M   G +P+ +TI   +S+C R  
Sbjct: 163 LFNEMP-EKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLL 221

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            +N G+EI+  +IN+  +  +  I + +VDM G+ G L+ A++  + MP + +   W ++
Sbjct: 222 DLNRGMEIHEELINSGFLLDSF-ISSALVDMYGKCGHLEMAIEVFEQMP-KKTVVAWNSM 279

Query: 434 VSASVMHGNS 443
           +S   + G+S
Sbjct: 280 ISGYGLKGDS 289



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 5/218 (2%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           L+ +L  C +   L  GK IH   +   L +D+ LC  LI++Y  C   D A+ VF++  
Sbjct: 6   LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNME 65

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEG 378
              +   W+ +++GY  +    EA+ L+ K++     KPD  T   VL ACG       G
Sbjct: 66  NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLG 125

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
             I+  ++ T  +     + + +V M  +    ++A+     MP E   + W  ++S   
Sbjct: 126 KMIHTCLVKTGLMMDIV-VGSSLVGMYAKCNAFEKAIWLFNEMP-EKDVACWNTVISCYY 183

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
             GN + + L Y  L++     P N V+++   +S  R
Sbjct: 184 QSGNFK-EALEYFGLMRRFGFEP-NSVTITTAISSCAR 219


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 177/550 (32%), Positives = 278/550 (50%), Gaps = 67/550 (12%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H LQ   +  SL L KQ HS I++ G  S+ F+S  L+  Y+ CGQ   +  +F  +  K
Sbjct: 57  HLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRK 116

Query: 85  DVYLYNSLINGYVKN-------------------------------HGHNEALELFSNMY 113
           ++   N LINGY ++                                 + E L LFS M 
Sbjct: 117 NIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMN 176

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
                PD+F L ++ +    ++ L  G  +HG   K GF  ++++ +SL  MY+KCG   
Sbjct: 177 ELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLG 236

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
           E   L   MP +NV                                   AW  +I G  Q
Sbjct: 237 EGERLIRAMPSQNV----------------------------------VAWNTLIAGRAQ 262

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           NG  +E L  +  M++     P+K++ VSV+ +CS L  L  G+QIH   I+   +  VS
Sbjct: 263 NGYPEEVLDQYNMMKMAG-FRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVS 321

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           + ++LI MYS+CG L+ + +VF +   N D + WSS+++ YG HG+G EA+ L+N+M   
Sbjct: 322 VISSLISMYSRCGCLEYSLKVFLECE-NGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQE 380

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
             + + +T + +L AC   GL  +G++ ++ ++  Y +KP  E   C+VD+LGR G ++ 
Sbjct: 381 KLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEE 440

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A   I++MPV+     W  L+SA  +H  +EM     + + +L+P +P  YV LSN++AS
Sbjct: 441 AEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHAS 500

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
            +RWD V+++R  M+DR LKK PG SW+ +  + H F + DK+HP SV I   L +L   
Sbjct: 501 DKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSE 560

Query: 534 MRGAAASPHL 543
           M+     P +
Sbjct: 561 MKKRGYVPDI 570


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/500 (34%), Positives = 268/500 (53%), Gaps = 39/500 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK-DVYLYNSL 92
           R+++  +Q H+++L  G   +  ++T+L+  YA CG  + ++ +F+ + ++ +V+L+N L
Sbjct: 77  RAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVL 136

Query: 93  INGYVKNHGHNEALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I  Y ++     A+EL+  M    ++ PD+FT   + K    + DL  G  +H   ++  
Sbjct: 137 IRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTS 196

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           +  DV +   L+ MY KCG   E              +W V                   
Sbjct: 197 WAADVFVCAGLIDMYAKCGCVDE--------------AWAV------------------- 223

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
            FD    R+   W +MI    QNG   EAL L   M   + I P  V+LVS +   +   
Sbjct: 224 -FDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMA-AEGIAPTIVTLVSAISAAADAG 281

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  G+++HG+  R+       L  +L+DMY+K G +  AR +F D  F+++ I+W++++
Sbjct: 282 ALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLF-DQLFHRELISWNAMI 340

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
            G+G+HG    A  L+ +M       PD IT VGVLSAC   G++ E  E+++ ++  Y 
Sbjct: 341 CGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYS 400

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           IKP  +   C+VD+LG +G+   A D IK M V+P   IWGAL++   +H N E+ +LA 
Sbjct: 401 IKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELAL 460

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
             LI+LEPE+  NYV LSN+YA S +W+  A +R +M +RGLKK   CSWI + GK+H F
Sbjct: 461 HKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGF 520

Query: 511 SVADKAHPCSVSIYEMLDDL 530
            V D +HP S  IYE L+ L
Sbjct: 521 LVGDASHPRSDEIYEELERL 540



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 141/342 (41%), Gaps = 46/342 (13%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           N+T   V   L+  A    L   ++ H +++     ++ FV   LI  YA CG   ++  
Sbjct: 166 NFTYPPV---LKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWA 222

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+S   +D  ++NS+I    +N    EAL L  NM    ++P   TL +    + +   
Sbjct: 223 VFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGA 282

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L  G  +HG   + GF     L  SL+ MY K G  +    LFD++  R + SWN     
Sbjct: 283 LPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWN----- 337

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                        AMI G+  +G  D A  LF  M+ + ++ P+
Sbjct: 338 -----------------------------AMICGFGMHGHADHACELFRRMRNEAQVMPD 368

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            ++ V VL  C+    +   K++       ++I+  + H       L+D+    G    A
Sbjct: 369 HITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQH----YTCLVDVLGHSGRFKEA 424

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
             V +      D+  W ++++G  +H     A L  +K++ L
Sbjct: 425 SDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIEL 466



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 3/187 (1%)

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N  +  ++L +C     +  G+Q+H   +   L  D  L   L+D+Y+ CG +  ARR+F
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGL 374
           ++     +   W+ ++  Y   G    A+ LY +M+  GS +PD  T   VL AC     
Sbjct: 122 DEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLD 181

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +  G E+++ V+ T        +CA ++DM  + G +D A     +  V  +  +W +++
Sbjct: 182 LGAGREVHDRVMRT-SWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDA-VVWNSMI 239

Query: 435 SASVMHG 441
           +A   +G
Sbjct: 240 AACGQNG 246


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 156/489 (31%), Positives = 283/489 (57%), Gaps = 5/489 (1%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
            + +H+    +G + + FV T L+ AYA CG    ++ VF+ +  +DV  +  +++ Y +
Sbjct: 89  VRGAHALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQ 148

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
              + EAL  F+ M  S V  D   LAT+    G I+ L  G  IH   +    +++  L
Sbjct: 149 TRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHL 208

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
           +++L+++Y  C        L++ MP++++ S    + G+A +  F +   +R +FD M  
Sbjct: 209 SSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEI---ARYIFDGMPE 265

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           ++V +W+AMI+GY  +   +EAL LF +MQ +  I P++V+++SV+  C++L  L   K 
Sbjct: 266 KDVVSWSAMISGYADSNQPNEALSLFNDMQ-ECGIRPDEVTMLSVISACANLGSLDKAKW 324

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           IH F     LN  + +CNALIDM++KCG ++ A  +F +    K+ ITW+S+++ + +HG
Sbjct: 325 IHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMP-QKNVITWTSMITAFAMHG 383

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
            G  A+ L+ +M   G +P+ +T + +L AC  +GL++EG  +++S++  Y I+P  E  
Sbjct: 384 DGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHY 443

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C+VD+LGRA  +  A++ I++M + P+  +WG+L++A  MHG+ ++   A K ++QL+P
Sbjct: 444 GCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKILQLDP 503

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
            +    V LS +Y  S   +   E+R +MK +G+ K  G SW+ ++   H F+   + +P
Sbjct: 504 NHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMDLNEPFHEFTAGGEKYP 563

Query: 519 CSVSIYEML 527
            +  I++ L
Sbjct: 564 ENDKIFQKL 572



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 146/339 (43%), Gaps = 71/339 (20%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC-----------GQPTQ--------- 73
           R L+  K  HS +L    + N  +S+ LI  YA C           G P +         
Sbjct: 185 RHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMV 244

Query: 74  -----------SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
                      ++ +F+ +  KDV  ++++I+GY  ++  NEAL LF++M    + PD+ 
Sbjct: 245 FGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEV 304

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T+ ++      +  L+    IH      G    + + N+L+ M+ KCG  +  LN+F+EM
Sbjct: 305 TMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEM 364

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           PQ+NV +W                                  T+MI  +  +GD   AL 
Sbjct: 365 PQKNVITW----------------------------------TSMITAFAMHGDGKSALC 390

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK---ELNHDVSLCNALI 299
           LF +M+  + +EPN+V+ +++L  C     +  G+ +    +++   E  H+   C  ++
Sbjct: 391 LFEQMR-NEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGC--MV 447

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           D+  +   +  A  + E      +   W S+++   +HG
Sbjct: 448 DLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHG 486



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 20/217 (9%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SL   K  H+ I + G      +   LI  +A CG    +  +FN +  K+V  + S+I 
Sbjct: 318 SLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMIT 377

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATI------SKLSGEIKDLNVGML-IHGLS 147
            +  +     AL LF  M    V P++ T   +      + L  E + L   M+  +G+ 
Sbjct: 378 AFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIE 437

Query: 148 IK---IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDF 203
            K    G +VD++    LM          E +NL + M  R NV  W   ++     GD 
Sbjct: 438 PKHEHYGCMVDLLGRAKLM---------QEAVNLIESMHLRPNVPVWGSLLAACWMHGDL 488

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            L   + +   Q+   +  A   +   Y+++ +L++A
Sbjct: 489 KLGAFAAKKILQLDPNHDGASVLLSKIYMKSDNLNDA 525


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 176/498 (35%), Positives = 276/498 (55%), Gaps = 36/498 (7%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+ +L LGH S+ FV   +I  YA                 + V  +N++++GY K    
Sbjct: 48  HAHVLKLGHGSDAFVRNAVIDMYA-----------------RKVADWNAMVSGYWKWESE 90

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            +A  LF  M   NV     T   +     ++KDL           +      V+  N++
Sbjct: 91  GQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPE----RSVVSWNAM 142

Query: 163 MSMYVKCGKFSECLNLFDEM--PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
           +S Y + G   E L LFDEM    RN  +WN  IS +   GD      +R++F+ M  RN
Sbjct: 143 LSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLD---SARKLFNTMPGRN 199

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
           V  W +MI GY QNG    A+ LF EM    ++ P++V++VSV+  C  L  L  G  + 
Sbjct: 200 VVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVV 259

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
            F    ++   +S  NA+I MYS+CGS++ A+RVF++ +  +D +++++++SG+  HG G
Sbjct: 260 RFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMA-TRDVVSYNTLISGFAAHGHG 318

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            EA+ L + M   G +PD +T +GVL+AC  +GL+ EG +++ S+ +     P  +  AC
Sbjct: 319 VEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYAC 373

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+LGR G+L+ A   ++ MP+EP   ++G+L++AS +H   E+ +LA   L +LEP+N
Sbjct: 374 MVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDN 433

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
             N++ LSN+YAS+ RW  V  +R  MK  G+KK+ G SW+   GK H F VAD++H  S
Sbjct: 434 SGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERS 493

Query: 521 VSIYEMLDDLILIMRGAA 538
             IY++L +L   MR A 
Sbjct: 494 DDIYQLLIELRKKMREAG 511



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 159/359 (44%), Gaps = 70/359 (19%)

Query: 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
           H + + ++  M    V PD F    + K +G       G+  H   +K+G   D  + N+
Sbjct: 11  HAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLGHGSDAFVRNA 65

Query: 162 LMSMYV--------------KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           ++ MY               K     +   LFD MP+RNV +W   ++G+A   D     
Sbjct: 66  VIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEA-- 123

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            +RR FD M  R+V +W AM++GY QNG  +EAL LF EM    R   N V+        
Sbjct: 124 -ARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYR---NSVTW------- 172

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
                                       NA+I  Y + G LD AR++F ++   ++ +TW
Sbjct: 173 ----------------------------NAMISAYMRVGDLDSARKLF-NTMPGRNVVTW 203

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           +S+++GY  +G+   A+ L+ +M+      PD +T+V V+SACG  G     LE+ N V+
Sbjct: 204 NSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLG----ALELGNWVV 259

Query: 387 ---NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
                 +IK +      ++ M  R G ++ A    + M      S +  L+S    HG+
Sbjct: 260 RFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS-YNTLISGFAAHGH 317



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 23/213 (10%)

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYS--------------KCGSLDCARRVFEDSS 319
           +GG   H   ++     D  + NA+IDMY+              K  S   A+ +F D  
Sbjct: 42  TGGIGFHAHVLKLGHGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLF-DVM 100

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             ++ ITW+++V+GY    K  EA   Y    C+  +  +++   +LS   ++GL  E L
Sbjct: 101 PERNVITWTAMVTGYA-KVKDLEAARRY--FDCMPERS-VVSWNAMLSGYAQNGLAEEAL 156

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            +++ ++  YR   T      ++    R G LD A     TMP     + W ++++    
Sbjct: 157 RLFDEMLGAYRNSVTWN---AMISAYMRVGDLDSARKLFNTMPGRNVVT-WNSMIAGYAQ 212

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
           +G S M    +K +I  +   P     +S + A
Sbjct: 213 NGQSAMAIELFKEMITAKKLTPDEVTMVSVISA 245


>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Vitis vinifera]
          Length = 539

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 176/517 (34%), Positives = 280/517 (54%), Gaps = 8/517 (1%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVSTKL-ITAYALCGQPTQSQLVF 78
           +T Q  + +    RS+   KQ  +  ++ G    +PF S  L  +A +  G    S  +F
Sbjct: 10  STNQTLIALLENCRSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIF 69

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
             I    +  +NS+I G+ K    N ++ +F  M    V PD  T   I+K    + +L 
Sbjct: 70  LQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLSELR 129

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           + + +H    K G   D  +ANSL+ MY  CG       +FDEM  RN  SWN  + G+A
Sbjct: 130 LALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYA 189

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
             GD      +R+VF+ M  R+V +W++MI+G V+ G+   AL +F  M++    + N+V
Sbjct: 190 KCGDLD---SARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGP-KANEV 245

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           ++VSVL  C+ L  L  G+ +H + +   +   + L  +L+DMY+KCG+++ A  VF   
Sbjct: 246 TMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGV 305

Query: 319 SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
             ++ D + W++I+ G   HG  HE++ L+ +M  LG  PD IT + + SAC   GL++E
Sbjct: 306 PMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHE 365

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
               + S +    + P +E  AC+VD+L RAGQL  A DFI  MP+EP+ S+ GAL++  
Sbjct: 366 AWHFFKS-LGKQGMVPKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASMLGALLNGC 424

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
           + H   ++ +   + LI+LEP++   Y+ LSN+YA  + WD    +R  M+ RG+KKSPG
Sbjct: 425 MNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERRGVKKSPG 484

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
            S++ + G  H F   DK H     IY ML+ ++  M
Sbjct: 485 FSFVEVLGTLHRFIAHDKTHNDLEKIYMMLNTIVRQM 521


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 173/522 (33%), Positives = 275/522 (52%), Gaps = 39/522 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L   A  + L+L  Q HS     G  S+ +V T  I+ Y+ CG+      +F 
Sbjct: 221 TTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFR 280

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
             +  D+  YN++I+GY  N     +L LF  +  S       TL ++  +SG    L +
Sbjct: 281 EFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGH---LML 337

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              IHG  +K  F+    ++ +L ++Y K  +                            
Sbjct: 338 IYAIHGYCLKSNFLSHASVSTALTTVYSKLNE---------------------------- 369

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                 +  +R++FD+   +++ +W AMI+GY QNG  ++A+ LF EMQ K    PN V+
Sbjct: 370 ------IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ-KSEFSPNPVT 422

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +  +L  C+ L  LS GK +H      +    + +  ALI MY+KCGS+  ARR+F D  
Sbjct: 423 ITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF-DLM 481

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             K+ +TW++++SGYGLHG+G EA+ ++ +M+  G  P  +T + VL AC  +GL+ EG 
Sbjct: 482 TKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGD 541

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           EI+NS+I+ Y  +P+ +  AC+VD+LGRAG L RAL FI+ M +EP  S+W  L+ A  +
Sbjct: 542 EIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRI 601

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H ++ +     + L +L+P+N   +V LSN++++ R +   A +R   K R L K+PG +
Sbjct: 602 HKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYT 661

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            I I    H F+  D++HP    IYE L+ L   MR A   P
Sbjct: 662 LIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQP 703



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 125/544 (22%), Positives = 236/544 (43%), Gaps = 93/544 (17%)

Query: 4   SSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
           ++A  T AL++   Y       F + S    S+    Q+H+QI+  G  ++  + TKL  
Sbjct: 9   ATAETTAALISKNTYLD-----FFKRST---SISHLAQTHAQIILHGFRNDISLLTKLTQ 60

Query: 64  AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDF 122
             +  G    ++ +F S+Q  DV+L+N L+ G+  N   + +L +F+++  S ++ P+  
Sbjct: 61  RLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSS 120

Query: 123 TLA-TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
           T A  IS  SG  +D   G +IHG ++  G   +++L ++++ MY K  +  +   +FD 
Sbjct: 121 TYAFAISAASG-FRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDR 179

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV-------------------- 221
           MP+++   WN  ISG+  +    + V S +VF  +   +                     
Sbjct: 180 MPEKDTILWNTMISGYRKN---EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQE 236

Query: 222 --------------------YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV--- 258
                               Y  T  I+ Y + G +     LF E +  D +  N +   
Sbjct: 237 LRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHG 296

Query: 259 ---------------------------SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
                                      +LVS++P    L+ +     IHG+ ++      
Sbjct: 297 YTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSH 353

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
            S+  AL  +YSK   ++ AR++F D S  K   +W++++SGY  +G   +A+ L+ +M 
Sbjct: 354 ASVSTALTTVYSKLNEIESARKLF-DESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
                P+ +TI  +LSAC + G ++ G  +++ V +T   + +  +   ++ M  + G +
Sbjct: 413 KSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRST-DFESSIYVSTALIGMYAKCGSI 471

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQDLAYKSLIQLEPENPSNYVSLSNL 470
             A      M  + +   W  ++S   +HG   E  ++ Y+ L       P  ++ +  L
Sbjct: 472 AEARRLFDLM-TKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCV--L 528

Query: 471 YASS 474
           YA S
Sbjct: 529 YACS 532


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 163/506 (32%), Positives = 273/506 (53%), Gaps = 36/506 (7%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H   +  G   N  V+  ++  Y  CG   ++ L+F  ++ +D   +N++I  + +N 
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNE 420

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
              + L LF +M  S + PDDFT  ++ K     + LN G  IHG  IK G  +D  + +
Sbjct: 421 EIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGS 480

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
           +L+ MY KCG                                  +++ + ++  +++ + 
Sbjct: 481 ALVDMYGKCG----------------------------------MLMEAEKIHARLEEKT 506

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
             +W ++I+G+      + A   F +M L+  I P+  +  +VL  C+++  +  GKQIH
Sbjct: 507 TVSWNSIISGFSSQKQSENAQRYFSQM-LEMGIIPDNYTYATVLDVCANMATIELGKQIH 565

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
              ++ +L+ DV + + L+DMYSKCG++  +R +FE +   +D +TWS+++  Y  HG G
Sbjct: 566 AQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAP-KRDYVTWSAMICAYAYHGLG 624

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            +A+ L+ +M  L  KP+    + VL AC   G +++GL  +  +++ Y + P  E  +C
Sbjct: 625 EKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSC 684

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+LGR+GQ++ AL  I++MP E    IW  L+S   M GN E+ + A+ SL+QL+P++
Sbjct: 685 MVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQD 744

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
            S YV L+N+YA    W  VA++R++MK+  LKK PGCSWI +  + H F V DKAHP S
Sbjct: 745 SSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRS 804

Query: 521 VSIYEMLDDLILIMRGAAASPHLGKM 546
             IYE    L+  M+ A   P +  M
Sbjct: 805 EEIYEQTHLLVDEMKWAGYVPDIDFM 830



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 131/541 (24%), Positives = 236/541 (43%), Gaps = 103/541 (19%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST---------------------- 59
           T  H LQ  +  ++L   KQ H+Q++  G +   +V+                       
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 60  ---------KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
                     LI  YA  G    +Q +F+S+  +DV  +NSL++ Y+ N  + +++E+F 
Sbjct: 68  PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M    +  D  T A I K    I+D  +G+ +H L+I++GF  DV+  ++L+ MY KC 
Sbjct: 128 RMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISG---------------------------------- 196
           K  +   +F EMP+RN+  W+  I+G                                  
Sbjct: 188 KLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 197 ----------------HASSGDFS-----------LVVRSRRVFDQMKRRNVY------A 223
                           HA   DF+           +  +  R+FD  K  N        +
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQS 307

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           + A+I GY +     +AL +F  +Q ++ +  +++SL   L  CS +     G Q+HG A
Sbjct: 308 YNAIIVGYARQDQGLKALDIFQSLQ-RNNLGFDEISLSGALTACSVIKRHLEGIQLHGLA 366

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           ++  L  ++ + N ++DMY KCG+L  A  +FE+    +DA++W++I++ +  + +  + 
Sbjct: 367 VKCGLGFNICVANTILDMYGKCGALMEACLIFEEME-RRDAVSWNAIIAAHEQNEEIVKT 425

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + L+  M+    +PD  T   V+ AC     +N G EI+  +I +  +     + + +VD
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKS-GMGLDWFVGSALVD 484

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           M G+ G L  A + I     E +   W +++S       SE     +  ++++    P N
Sbjct: 485 MYGKCGMLMEA-EKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGI-IPDN 542

Query: 464 Y 464
           Y
Sbjct: 543 Y 543



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 151/307 (49%), Gaps = 6/307 (1%)

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T + I +    +K LN G  +H   I  GFV  + +AN L+  Y K  K +    +FD 
Sbjct: 7   LTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           MPQR+V SWN  I G+A  G+      ++ +FD M  R+V +W ++++ Y+ NG   +++
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGF---AQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSI 123

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            +F+ M+   +I  +  +   +L  CS +     G Q+H  AI+    +DV   +AL+DM
Sbjct: 124 EIFVRMR-SLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDM 182

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           YSKC  LD A RVF +    ++ + WS++++GY  + +  E + L+  M+ +G      T
Sbjct: 183 YSKCKKLDDAFRVFREMP-ERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
              V  +C        G +++   + +      + I    +DM  +  ++  A     T+
Sbjct: 242 YASVFRSCAGLSAFKLGTQLHGHALKS-DFAYDSIIGTATLDMYAKCERMFDAWKVFNTL 300

Query: 422 PVEPSPS 428
           P  P  S
Sbjct: 301 PNPPRQS 307



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/520 (22%), Positives = 218/520 (41%), Gaps = 70/520 (13%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT    L+  +      L  Q H   + +G  ++    + L+  Y+ C +   +  VF  
Sbjct: 139 ATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFRE 198

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +  +++  ++++I GYV+N    E L+LF +M    +     T A++ +    +    +G
Sbjct: 199 MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLG 258

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             +HG ++K  F  D I+  + + MY KC +  +   +F+ +P     S+N  I G+A  
Sbjct: 259 TQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQ 318

Query: 201 GD-------FSLVVRSRRVFDQ------------MKRR-----------------NVYAW 224
                    F  + R+   FD+            +KR                  N+   
Sbjct: 319 DQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVA 378

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRI------------------------------E 254
             +++ Y + G L EA ++F EM+ +D +                              E
Sbjct: 379 NTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTME 438

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+  +  SV+  C+    L+ G +IHG  I+  +  D  + +AL+DMY KCG L  A ++
Sbjct: 439 PDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKI 498

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
                  K  ++W+SI+SG+    +   A   +++M+ +G  PD  T   VL  C     
Sbjct: 499 HARLE-EKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMAT 557

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           I  G +I+  ++   ++     I + +VDM  + G +  +    +  P     + W A++
Sbjct: 558 IELGKQIHAQILKL-QLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVT-WSAMI 615

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            A   HG  E     ++ + QL    P++ + +S L A +
Sbjct: 616 CAYAYHGLGEKAINLFEEM-QLLNVKPNHTIFISVLRACA 654



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 148/332 (44%), Gaps = 44/332 (13%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           ++  A  ++L    + H +I+  G   + FV + L+  Y  CG   +++ +   ++ K  
Sbjct: 448 VKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTT 507

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NS+I+G+        A   FS M    + PD++T AT+  +   +  + +G  IH  
Sbjct: 508 VSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQ 567

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            +K+    DV +A++L+ MY KCG   +   +F++ P+R+  +W+  I            
Sbjct: 568 ILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMIC----------- 616

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                                   Y  +G  ++A+ LF EMQL + ++PN    +SVL  
Sbjct: 617 -----------------------AYAYHGLGEKAINLFEEMQLLN-VKPNHTIFISVLRA 652

Query: 267 CSSLIGLSGG-----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           C+ +  +  G     K +  + +  ++ H     + ++D+  + G ++ A ++ E   F 
Sbjct: 653 CAHMGYVDKGLHYFQKMLSHYGLDPQMEH----YSCMVDLLGRSGQVNEALKLIESMPFE 708

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
            D + W +++S   + G    A   +N ++ L
Sbjct: 709 ADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQL 740



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 88/213 (41%), Gaps = 32/213 (15%)

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
            K++   +L  CS+L  L+ GKQ+H   I       + + N L+  Y K   ++ A +VF
Sbjct: 5   KKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVF 64

Query: 316 E------------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
           +                              DS   +D ++W+S++S Y  +G   +++ 
Sbjct: 65  DRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIE 124

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           ++ +M  L    D  T   +L AC        GL+++   I     +      + +VDM 
Sbjct: 125 IFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQM-GFENDVVTGSALVDMY 183

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
            +  +LD A    + MP E +   W A+++  V
Sbjct: 184 SKCKKLDDAFRVFREMP-ERNLVCWSAVIAGYV 215


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/467 (36%), Positives = 274/467 (58%), Gaps = 7/467 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H Q+L LG  S  F+   LI  Y   G+   +Q VF+ +  +D+  +NSLI GY + +  
Sbjct: 180 HVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRF 239

Query: 103 NEALELFSNMYYSNVSPDDFTLA-TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
            E L+LF+ M  +NV+ D  T+   I   S   +D  V  ++  +  K    +DV L NS
Sbjct: 240 KEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDK-HVDIDVYLGNS 298

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+ MY + G       +FD M ++N+ SWN  ++G+A++GD   +V ++++F++M  RNV
Sbjct: 299 LIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGD---LVAAKKLFNEMPIRNV 355

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            +WT MI+G  Q     +AL LF EM +   ++P+++++ SVL  CS L  L  G+ +H 
Sbjct: 356 ISWTCMISGCAQANQCSDALKLFQEM-MDANVKPDEITVSSVLSACSHLGLLDTGQTVHE 414

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           +  R ++  DV + NALIDMY KCG +D A  VF D    KD+++W+S++ G  ++G   
Sbjct: 415 YMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMK-KKDSVSWTSMILGLAVNGFVD 473

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
               L+++M+  G +P   + +G+L AC  +GL+++GLE + S+ + Y ++P  +   CV
Sbjct: 474 NVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCV 533

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           VD+L R+G+LDRA +FIK MPV P   +W  L+SA  +H N  + ++A   L++L+P N 
Sbjct: 534 VDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNS 593

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
            NYV LSN YA S RWD  + +R +M    ++K    S I + G T+
Sbjct: 594 GNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSSIEVIGATN 640



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 210/461 (45%), Gaps = 72/461 (15%)

Query: 15  SRNYTSA-TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC-GQPT 72
           SR +TS+ T +   Q+  +  S+K  K+ H+ ++   H  NP   + +I +YAL      
Sbjct: 48  SRLFTSSSTTRKCQQIIKSGFSIKSIKEQHAHLIRTHHHKNPKSMSNVIKSYALSRSHLN 107

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN-MYYSNVSPDDFTLATISKLS 131
           ++   F  I    + ++N LI G  ++   NEA+ ++S+ MY   +  D+ T   + K  
Sbjct: 108 KANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKAC 167

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
             +KD+  G + H   +K+GF   + + NSL+ MY   G+      +FD+M  R++ SWN
Sbjct: 168 SRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWN 227

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
             I G++    F  V+    +F+ M+  NV A                            
Sbjct: 228 SLICGYSQCNRFKEVL---DLFNLMREANVTA---------------------------- 256

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
               + V++V V+  CS L        +  +   K ++ DV L N+LIDMY + G +D A
Sbjct: 257 ----DSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLA 312

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM--------VCLGS-------- 355
           RRVF D    K+ ++W+++++GY   G    A  L+N+M         C+ S        
Sbjct: 313 RRVF-DRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQC 371

Query: 356 ---------------KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
                          KPD IT+  VLSAC   GL++ G  ++  +   + IK    +   
Sbjct: 372 SDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCR-HDIKSDVYVGNA 430

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++DM  + G +D+AL+    M  + S S W +++    ++G
Sbjct: 431 LIDMYCKCGVVDKALEVFHDMKKKDSVS-WTSMILGLAVNG 470


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 173/537 (32%), Positives = 279/537 (51%), Gaps = 47/537 (8%)

Query: 2   ILSSARNTFAL--------VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS 53
           +L   RN+F +        +    YT  ++   L+       L+L +Q HSQI+      
Sbjct: 427 LLDDLRNSFRIFRQMQIEEIVPNQYTYPSI---LKTCIRLGDLELGEQIHSQIIKTNFQL 483

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N +V + LI  YA  G+   +  +      KDV  + ++I GY + +  ++AL  F  M 
Sbjct: 484 NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 543

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
              +  D+  L         ++ L  G  IH  +   GF  D+   N+L+++Y +CGK  
Sbjct: 544 DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIE 603

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
           E                                  S   F+Q +  +  AW A+++G+ Q
Sbjct: 604 E----------------------------------SYLAFEQTEAGDNIAWNALVSGFQQ 629

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           +G+ +EAL +F+ M  ++ I+ N  +  S +   S    +  GKQ+H    +   + +  
Sbjct: 630 SGNNEEALRVFVRMN-REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETE 688

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           +CNALI MY+KCGS+  A + F + S  K+ ++W++I++ Y  HG G EA+  +++M+  
Sbjct: 689 VCNALISMYAKCGSISDAEKQFLEVS-TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 747

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
             +P+ +T+VGVLSAC   GL+++G+  + S+ + Y + P  E   CVVDML RAG L R
Sbjct: 748 NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 807

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A +FI+ MP++P   +W  L+SA V+H N E+ + A   L++LEPE+ + YV LSNLYA 
Sbjct: 808 AKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAV 867

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           S++WDA    R  MK++G+KK PG SWI +    H F V D+ HP +  I+E   DL
Sbjct: 868 SKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDL 924



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 197/431 (45%), Gaps = 43/431 (9%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
            SL++ +Q H  +L LG  S+ +V   L++ Y   G    ++ +F+++  +D   YN+LI
Sbjct: 262 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 321

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           NG  +     +A+ELF  M+   + PD  TLA++         L  G  +H  + K+GF 
Sbjct: 322 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFA 381

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +  +  +L+++Y KC      L+ F E    NV  WNV                     
Sbjct: 382 SNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNV--------------------- 420

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                        M+  Y    DL  +  +F +MQ+++ I PN+ +  S+L TC  L  L
Sbjct: 421 -------------MLVAYGLLDDLRNSFRIFRQMQIEE-IVPNQYTYPSILKTCIRLGDL 466

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             G+QIH   I+     +  +C+ LIDMY+K G LD A  +    +  KD ++W+++++G
Sbjct: 467 ELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTTMIAG 525

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y  +    +A+  + +M+  G + D + +   +SAC     + EG +I+     +     
Sbjct: 526 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSS 584

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSEMQDLAYKS 452
                  +V +  R G+++ +  ++     E   +I W ALVS     GN+E    A + 
Sbjct: 585 DLPFQNALVTLYSRCGKIEES--YLAFEQTEAGDNIAWNALVSGFQQSGNNEE---ALRV 639

Query: 453 LIQLEPENPSN 463
            +++  E   N
Sbjct: 640 FVRMNREGIDN 650



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 185/406 (45%), Gaps = 39/406 (9%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           T+ SL   ++ HSQIL LG  SN  +S KL   Y   G    +  VF+ +  + ++ +N 
Sbjct: 57  TNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNK 116

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA-TISKLSGEIKDLNVGMLIHGLSIKI 150
           +I      +   E   LF  M   NV+P++ T +  +    G     +V   IH   +  
Sbjct: 117 MIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQ 176

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G     ++ N L+ +Y + G                                   V  +R
Sbjct: 177 GLRDSTVVCNPLIDLYSRNG----------------------------------FVDLAR 202

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           RVFD ++ ++  +W AMI+G  +N    EA+ LF +M +   I P   +  SVL  C  +
Sbjct: 203 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLG-IMPTPYAFSSVLSACKKI 261

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G+Q+HG  ++   + D  +CNAL+ +Y   G+L  A  +F + S  +DA+T++++
Sbjct: 262 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTL 320

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++G    G G +A+ L+ +M   G +PD  T+  ++ AC   G +  G +++ +      
Sbjct: 321 INGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLH-AYTTKLG 379

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
                +I   ++++  +   ++ ALD+     VE +  +W  ++ A
Sbjct: 380 FASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 424



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 3/185 (1%)

Query: 253 IEPNKVSLVSVLPTCSSLIG-LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
           I PN  +L  +L  C    G L  G+++H   ++  L+ +  L   L D Y   G L  A
Sbjct: 40  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 99

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
            +VF++    +   TW+ ++          E   L+ +MV     P+  T  GVL AC  
Sbjct: 100 FKVFDEMP-ERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
             +  + +E  ++ I    ++ +T +C  ++D+  R G +D A      + ++   S W 
Sbjct: 159 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS-WV 217

Query: 432 ALVSA 436
           A++S 
Sbjct: 218 AMISG 222


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 156/486 (32%), Positives = 272/486 (55%), Gaps = 36/486 (7%)

Query: 50  GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELF 109
           G  S+ +VS  +I  Y  CG P ++  VF+ + + DV  +++LI GY +N  + E+ +L+
Sbjct: 263 GFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLY 322

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
             M    ++ +     ++    G+++ L  G  +H   +K G + DV++ ++L+ MY  C
Sbjct: 323 IGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANC 382

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           G   E                                  +  +F+    +++  W +MI 
Sbjct: 383 GSIKE----------------------------------AESIFECTSDKDIMVWNSMIV 408

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           GY   GD + A   F  +   +   PN +++VS+LP C+ +  L  GK+IHG+  +  L 
Sbjct: 409 GYNLVGDFESAFFTFRRIWGAEH-RPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLG 467

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            +VS+ N+LIDMYSKCG L+   +VF+     ++  T+++++S  G HG+G + +  Y +
Sbjct: 468 LNVSVGNSLIDMYSKCGFLELGEKVFKQMMV-RNVTTYNTMISACGSHGQGEKGLAFYEQ 526

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M   G++P+ +T + +LSAC  +GL++ G  +YNS+IN Y I+P  E  +C+VD++GRAG
Sbjct: 527 MKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAG 586

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
            LD A  FI  MP+ P  +++G+L+ A  +H   E+ +L  + ++QL+ ++  +YV LSN
Sbjct: 587 DLDGAYKFITRMPMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLLSN 646

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
           LYAS +RW+ ++++R+M+KD+GL+K PG SWI +    + F      HP    I E L+ 
Sbjct: 647 LYASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQVGHCIYVFHATSAFHPAFAKIEETLNS 706

Query: 530 LILIMR 535
           L+L+M+
Sbjct: 707 LLLVMK 712



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 127/530 (23%), Positives = 228/530 (43%), Gaps = 90/530 (16%)

Query: 25  HFLQVSATHR-----SLKLTKQSHSQILSLGHI------SNPFVSTKLITAYALCGQPTQ 73
           HF  V++ HR     +L   +  H+ +L LG        S+ F S +L+  Y   G    
Sbjct: 28  HF-TVTSFHRLKSPPNLHEARTLHALLLVLGFFQPTCPHSSSFAS-QLVNVYVNFGSLQH 85

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           + L F ++ HK +  +N+++ G V      +A+  + +M    V+PD++T   + K    
Sbjct: 86  AFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSS 145

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           +  L +G  +H  ++      +V +  +++ M+ KCG   +   +F+EMP R++ SW   
Sbjct: 146 LHALQLGRWVHE-TMHGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTAL 204

Query: 194 ISGHASSGDFSLVVRSRRVFDQMK------------------------------------ 217
           I G   +G+    + +  +F +M+                                    
Sbjct: 205 ICGTMWNGE---CLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVR 261

Query: 218 ---RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE-------------------- 254
                ++Y   A+I+ Y + GD  EA  +F  M   D +                     
Sbjct: 262 SGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKL 321

Query: 255 ----------PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
                      N +   SVLP    L  L  GK++H F +++ L  DV + +ALI MY+ 
Sbjct: 322 YIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYAN 381

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           CGS+  A  +FE +S +KD + W+S++ GY L G    A   + ++     +P+ IT+V 
Sbjct: 382 CGSIKEAESIFECTS-DKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVS 440

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
           +L  C + G + +G EI+  V  +  +     +   ++DM  + G L+      K M V 
Sbjct: 441 ILPICTQMGALRQGKEIHGYVTKS-GLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVR 499

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            + + +  ++SA   HG  E + LA+   ++ E   P+    +S L A S
Sbjct: 500 -NVTTYNTMISACGSHGQGE-KGLAFYEQMKEEGNRPNKVTFISLLSACS 547



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 138/323 (42%), Gaps = 44/323 (13%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LK  K+ H+ +L  G +S+  V + LI  YA CG   +++ +F     KD+ ++NS+I G
Sbjct: 350 LKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVG 409

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y        A   F  ++ +   P+  T+ +I  +  ++  L  G  IHG   K G  ++
Sbjct: 410 YNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLN 469

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V + NSL+ MY KCG       +F +M  RNV ++N  IS   S G      +    ++Q
Sbjct: 470 VSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGE---KGLAFYEQ 526

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           MK               + G+                  PNKV+ +S+L  CS    L  
Sbjct: 527 MK---------------EEGN-----------------RPNKVTFISLLSACSHAGLLDR 554

Query: 276 G-----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
           G       I+ + I   + H     + ++D+  + G LD A +         DA  + S+
Sbjct: 555 GWLLYNSMINDYGIEPNMEH----YSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSL 610

Query: 331 VSGYGLHGKGHEAVLLYNKMVCL 353
           +    LH K     LL  +++ L
Sbjct: 611 LGACRLHNKVELTELLAERILQL 633



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 5/186 (2%)

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
           H  S  + L+++Y   GSL  A   F     +K  I W++I+ G    G   +A+  Y+ 
Sbjct: 65  HSSSFASQLVNVYVNFGSLQHAFLTFRALP-HKPIIAWNAILRGLVAVGHFTKAIHFYHS 123

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M+  G  PD  T   VL AC     +  G  ++ ++    + K    +   V+DM  + G
Sbjct: 124 MLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHETMHG--KTKANVYVQCAVIDMFAKCG 181

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
            ++ A    + MP     S W AL+  ++ +G      L ++ + + E   P + +  S 
Sbjct: 182 SVEDARRMFEEMPDRDLAS-WTALICGTMWNGECLEALLLFRKM-RSEGLMPDSVIVASI 239

Query: 470 LYASSR 475
           L A  R
Sbjct: 240 LPACGR 245


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 274/489 (56%), Gaps = 41/489 (8%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
            + T L+  YA CG    ++ VF+++  ++   +++LI G+V      +A  LF  M   
Sbjct: 274 LLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ 333

Query: 116 NV---SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
            +   SP   ++A+  +    +  L +G  +H L  K G   D+   NSL+SMY K G  
Sbjct: 334 GLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 391

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            + + LFDE                                  M  ++  +++A+++GYV
Sbjct: 392 DQAIALFDE----------------------------------MAVKDTVSYSALVSGYV 417

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG  +EA ++F +MQ  + +EP+  ++VS++P CS L  L  G+  HG  I + L  + 
Sbjct: 418 QNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASET 476

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           S+CNALIDMY+KCG +D +R+VF +   ++D ++W+++++GYG+HG G EA  L+ +M  
Sbjct: 477 SICNALIDMYAKCGRIDLSRQVF-NMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 535

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
           LG  PD +T + +LSAC  SGL+ EG   ++ + + Y + P  E   C+VD+L R G LD
Sbjct: 536 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLD 595

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A +FI++MP+     +W AL+ A  ++ N ++     + + +L PE   N+V LSN+Y+
Sbjct: 596 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 655

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           ++ R+D  AE+R + K +G KKSPGCSWI I+G  H F   D++HP S  IY  LD++++
Sbjct: 656 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILV 715

Query: 533 IMRGAAASP 541
            ++     P
Sbjct: 716 GIKKLGYQP 724



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 188/407 (46%), Gaps = 53/407 (13%)

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH--GHNEALELFSNMYYSNVSPDDFTLAT 126
           G  +++  +F+ I   DV  YN LI  Y  +      + L L+  M    V+P+++T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
             K    + D + G  IH  +I  G   D+ ++ +L+ MYVKC    +  ++F  MP R+
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           + +WN                                  AM+ GY  +G    A+   L 
Sbjct: 191 LVAWN----------------------------------AMLAGYAHHGMYHHAVAHLLS 216

Query: 247 MQLK-DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR----------KELNHDVSLC 295
           MQ++  R+ PN  +LV++LP  +    L+ G  +H + IR           +L   V L 
Sbjct: 217 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLG 276

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG- 354
            AL+DMY+KCGSL  ARRVF D+   ++ +TWS+++ G+ L  +  +A LL+  M+  G 
Sbjct: 277 TALLDMYAKCGSLLYARRVF-DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 335

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
                 +I   L AC     +  G +++ +++    +         ++ M  +AG +D+A
Sbjct: 336 CFLSPTSIASALRACASLDHLRMGEQLH-ALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL--IQLEPE 459
           +     M V+ + S + ALVS  V +G +E   L +K +    +EP+
Sbjct: 395 IALFDEMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 440



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 44/310 (14%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A+   L++ +Q H+ +   G  ++      L++ YA  G   Q+  +F+ +  KD 
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             Y++L++GYV+N    EA  +F  M   NV PD  T+ ++      +  L  G   HG 
Sbjct: 407 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 466

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            I  G   +  + N+L+ MY KCG+      +F+ MP R++ SWN               
Sbjct: 467 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT-------------- 512

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                               MI GY  +G   EA  LFLEM       P+ V+ + +L  
Sbjct: 513 --------------------MIAGYGIHGLGKEATALFLEMN-NLGFPPDGVTFICLLSA 551

Query: 267 CSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           CS    +  GK       HG+ +   + H +     ++D+ S+ G LD A    +     
Sbjct: 552 CSHSGLVIEGKHWFHVMRHGYGLTPRMEHYI----CMVDLLSRGGFLDEAYEFIQSMPLR 607

Query: 322 KDAITWSSIV 331
            D   W +++
Sbjct: 608 ADVRVWVALL 617



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 29/276 (10%)

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA--LVLFLEMQLKDRIE 254
           H +SG  S   R+  +FDQ+   +V  +  +I  Y  +     A  L L+  M L+ R+ 
Sbjct: 67  HIASGHLS---RAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRM-LRHRVA 122

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           PN  +    L  CS+L     G+ IH  AI   L  D+ +  AL+DMY KC  L  A  +
Sbjct: 123 PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 182

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAV--LLYNKMVCLGSKPDIITIVGVLSACGRS 372
           F      +D + W+++++GY  HG  H AV  LL  +M     +P+  T+V +L    + 
Sbjct: 183 FATMP-ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQ 241

Query: 373 GLINEGLEIYNSVINTYRIKPTTE--------------ICACVVDMLGRAGQLDRALDFI 418
           G + +G     + ++ YRI+                  +   ++DM  + G L  A    
Sbjct: 242 GALAQG-----TSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVF 296

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
             MP   +   W AL+   V+        L +K+++
Sbjct: 297 DAMPAR-NEVTWSALIGGFVLCSRMTQAFLLFKAML 331



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 98/254 (38%), Gaps = 17/254 (6%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  + SH  ++  G  S   +   LI  YA CG+   S+ VFN +  +D+  +N++I 
Sbjct: 456 ALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA 515

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           GY  +    EA  LF  M      PD  T +  +S  S     +      H +    G  
Sbjct: 516 GYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLT 575

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVRSRRV 212
             +     ++ +  + G   E       MP R +V  W   +       +  L  +  R+
Sbjct: 576 PRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRM 635

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS---- 268
             ++       +  + N Y   G  DEA     E+++  +++  K S     P CS    
Sbjct: 636 IQELGPEGTGNFVLLSNIYSAAGRFDEA----AEVRIIQKVQGFKKS-----PGCSWIEI 686

Query: 269 --SLIGLSGGKQIH 280
             SL    GG Q H
Sbjct: 687 NGSLHAFVGGDQSH 700


>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
           sativa Japonica Group]
          Length = 503

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 159/386 (41%), Positives = 231/386 (59%), Gaps = 6/386 (1%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSG 201
           +H L ++ G   D   + SL+  Y  CG  +    +FDE     +V SWNV I G+  SG
Sbjct: 97  LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKSG 156

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D +   R+R +FD M  RNV +WT +I  Y Q    +EA+ +F  MQ++  IEP+ V+L+
Sbjct: 157 DLA---RARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEG-IEPDGVALL 212

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVL  C  L  +  G+ +H F +R+ L  ++ L NA+IDMY KCGS+  A  VFE     
Sbjct: 213 SVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGME-Q 271

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K  +TW+++++G+ LHG G EAV L+ +M      P+ IT + VLS C   GL + G   
Sbjct: 272 KSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWY 331

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + ++++ Y+IKP  E   C++D+LGRAG L  A   I+ MP + + +IWGAL++A+  HG
Sbjct: 332 FKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHG 391

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           ++E+ + A   LI+LEP N  NY+ LSN+YA   RWDAV ELR  M+DRGL+  PG S I
Sbjct: 392 DTELGEQALLHLIELEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSI 451

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEML 527
            + G  H F+  D +HP    I E+L
Sbjct: 452 DVDGMVHEFTSRDGSHPSLHKIREVL 477



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 152/346 (43%), Gaps = 81/346 (23%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN-SIQHKDVYLYNSLINGYVKN 99
           Q HS ++  GH ++P  S  L+ AY  CG    ++ VF+ +    DV  +N +I+GYVK+
Sbjct: 96  QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKS 155

Query: 100 -------------HGHN------------------EALELFSNMYYSNVSPDDFTLATIS 128
                         G N                  EA+E+F  M    + PD   L ++ 
Sbjct: 156 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 215

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
              G++  +++G  +H   ++ G   ++ L N+++ MYVKCG   + L +F+ M Q+++ 
Sbjct: 216 SACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIV 275

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           +W   I+G A  G   L                                 EA+ LF  M+
Sbjct: 276 TWTTMIAGFALHG-LGL---------------------------------EAVELFRRME 301

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSG-GK-----QIHGFAIRKELNHDVSLCNALIDMY 302
            K+ + PN ++ ++VL  CS  +GL+  G+      +  + I+  + H       +ID+ 
Sbjct: 302 -KENVSPNDITFLAVLSVCSH-VGLTDLGRWYFKTMVSQYKIKPRVEH----YGCMIDLL 355

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHEAVL 345
            + G L  AR + +D  F  +A  W ++++    HG    G +A+L
Sbjct: 356 GRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALL 401



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 33/195 (16%)

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           Q+H   +R     D     +L+  Y  CGS+  ARRVF++++ + D ++W+ ++ GY   
Sbjct: 96  QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKS 155

Query: 338 G-------------------------------KGHEAVLLYNKMVCLGSKPDIITIVGVL 366
           G                               +  EA+ ++ +M   G +PD + ++ VL
Sbjct: 156 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVL 215

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           SACG  G+++ G  ++  V+     +    + A ++DM  + G + +AL+  + M  + S
Sbjct: 216 SACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNA-IIDMYVKCGSVKKALEVFEGME-QKS 273

Query: 427 PSIWGALVSASVMHG 441
              W  +++   +HG
Sbjct: 274 IVTWTTMIAGFALHG 288



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 12/223 (5%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           + L +  H  +L  G      +   +I  Y  CG   ++  VF  ++ K +  + ++I G
Sbjct: 224 VDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAG 283

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG-----MLIHGLSIKI 150
           +  +    EA+ELF  M   NVSP+D T   +  +   +   ++G      ++    IK 
Sbjct: 284 FALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIK- 342

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRS 209
                V     ++ +  + G   E   L  +MP + N   W   ++   + GD  L  ++
Sbjct: 343 ---PRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQA 399

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                +++  N   +  + N Y +    D   V  L + ++DR
Sbjct: 400 LLHLIELEPHNSGNYILLSNIYAEQERWDA--VRELRISMRDR 440


>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 169/497 (34%), Positives = 284/497 (57%), Gaps = 12/497 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLIT--AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ+H+Q+L  G  ++ FV ++L+   A +  G  + +  +F  IQH  + ++N++I   +
Sbjct: 22  KQAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALL 81

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
                  A+ +FS ++ + + PD +TL  + K S  + ++++G  IH  +IK+G  V+  
Sbjct: 82  LRGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEF 141

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + NSL+ MY           +FDEMP+ +  SW V I G+A+ GD   V  +R +FD   
Sbjct: 142 VGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGD---VDTARELFDMAT 198

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            ++   W AMI+GYVQN    E L +F  MQL + +EP++  +V++L  C+ +  L  G 
Sbjct: 199 VKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTE-VEPDEAIIVTILSACAHMGALDTGI 257

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            IH +  R  L   + +   LIDMY+KCG LD A+ +F + S  +D + W++++SG  + 
Sbjct: 258 WIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMS-QRDNVCWNAMISGMAMD 316

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G G  A+ L+ +M   G KPD IT + V  AC  SG+++EG+ I+N +   ++I+P +E 
Sbjct: 317 GDGEGAIKLFMEMEKAGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEH 376

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPS----IWGALVSASVMHGNSEMQDLAYKSL 453
             CV+D+L R G+ + A   I+ +P   SPS     W A +SA   HG ++  ++A + L
Sbjct: 377 YGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERL 436

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
            QLE  + + YV LSN+YA+  + +    +R MMK +G++K PGCS I ++G  + F   
Sbjct: 437 FQLERHSGA-YVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAG 495

Query: 514 DKAHPCSVSIYEMLDDL 530
           +K H    +I+ +L++L
Sbjct: 496 EKTHRHIDNIHLVLEEL 512


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 164/462 (35%), Positives = 264/462 (57%), Gaps = 5/462 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+++L LG  S+ +VS  LI  Y  CG    +Q VF+ +  +D+  +NSL+ GY +    
Sbjct: 100 HARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRF 159

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            E L +F  M  + V  D  T+  +      + +  V   +     +    +DV L N+L
Sbjct: 160 REVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTL 219

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + MY + G       +FD+M  RN+ SWN  I G+  +G+   +V +R +FD M +R+V 
Sbjct: 220 IDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGN---LVAARELFDAMSQRDVI 276

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +WT MI  Y Q G   EAL LF EM ++ +++P+++++ SVL  C+    L  G+  H +
Sbjct: 277 SWTNMITSYSQAGQFTEALRLFKEM-MESKVKPDEITVASVLSACAHTGSLDVGEAAHDY 335

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
             + ++  D+ + NALIDMY KCG ++ A  VF++    KD+++W+SI+SG  ++G    
Sbjct: 336 IQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMR-KKDSVSWTSIISGLAVNGFADS 394

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+  +++M+    +P     VG+L AC  +GL+++GLE + S+   Y +KP  +   CVV
Sbjct: 395 ALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVV 454

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+L R+G L RA +FIK MPV P   IW  L+SAS +HGN  + ++A K L++L+P N  
Sbjct: 455 DLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSG 514

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           NYV  SN YA S RW+   ++R +M+   ++K  G S I + 
Sbjct: 515 NYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIEME 556



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 208/417 (49%), Gaps = 19/417 (4%)

Query: 53  SNPFVSTKLITAYALCGQPT-QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           ++P     LI +YAL      ++  +F  I    +  +N +I G+  +   NEA+ +++ 
Sbjct: 8   TDPSTIYNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNL 67

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           MY   +  ++ T   + K    + D++ G  IH   +K+GF   + ++N+L++MY  CG 
Sbjct: 68  MYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGH 127

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA-WTAMING 230
                 +FDEMP+R++ SWN  + G+     F  V+    VF+ M+   V      M+  
Sbjct: 128 LGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVL---GVFEAMRVAGVKGDAVTMVKV 184

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI----HGFAIRK 286
            +    L E  V      + D IE N V +   L   ++LI + G + +     G   + 
Sbjct: 185 VLACTSLGEWGV---ADAMVDYIEENNVEIDVYLG--NTLIDMYGRRGLVHLARGVFDQM 239

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
           +  + VS  NA+I  Y K G+L  AR +F D+   +D I+W+++++ Y   G+  EA+ L
Sbjct: 240 QWRNLVSW-NAMIMGYGKAGNLVAARELF-DAMSQRDVISWTNMITSYSQAGQFTEALRL 297

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           + +M+    KPD IT+  VLSAC  +G ++ G E  +  I  Y +K    +   ++DM  
Sbjct: 298 FKEMMESKVKPDEITVASVLSACAHTGSLDVG-EAAHDYIQKYDVKADIYVGNALIDMYC 356

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           + G +++AL+  K M  + S S W +++S   ++G ++   L Y S +  E   PS+
Sbjct: 357 KCGVVEKALEVFKEMRKKDSVS-WTSIISGLAVNGFAD-SALDYFSRMLREVVQPSH 411



 Score = 45.4 bits (106), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 98/253 (38%), Gaps = 20/253 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A   SL + + +H  I      ++ +V   LI  Y  CG   ++  VF  +
Sbjct: 312 TVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEM 371

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KD   + S+I+G   N   + AL+ FS M    V P       I         ++ G+
Sbjct: 372 RKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGL 431

Query: 142 -------LIHGLSIKI---GFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSW 190
                   ++GL  ++   G VVD++          + G          EMP   +V  W
Sbjct: 432 EYFESMEKVYGLKPEMKHYGCVVDLL---------SRSGNLQRAFEFIKEMPVTPDVVIW 482

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
            + +S     G+  L   + +   ++   N   +    N Y  +   ++A+ +   M+  
Sbjct: 483 RILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKS 542

Query: 251 DRIEPNKVSLVSV 263
           +  +P+  S + +
Sbjct: 543 NVQKPSGSSCIEM 555


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 194/564 (34%), Positives = 286/564 (50%), Gaps = 72/564 (12%)

Query: 25  HF-LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL-----VF 78
           HF LQ   T R      Q H+  +    +++P VS++L+  YA    P  + L     +F
Sbjct: 19  HFPLQNCGTERE---ANQLHALSIKTASLNHPSVSSRLLALYA---DPRINNLQYAHSLF 72

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + IQ   +  +N LI  Y++N   N+A+ LF  +    V PD FTL  + K    +  L 
Sbjct: 73  DWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGCARLGALQ 131

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  IHGL +KIGF VD  + +SL+SMY KCG+   C  +FD M  ++V SWN  I G+A
Sbjct: 132 EGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYA 191

Query: 199 SSGDFSLVVR----------------------------SRRVFDQMKRRNVYAWTAMING 230
             G+  L +                             +R VFD+M  RN  +W AMING
Sbjct: 192 RCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMING 251

Query: 231 YVQNGDLDEALVLF------------------------------LEMQLKDRIEPNKVSL 260
           Y++ GD + A  LF                               E+ L++ I PN  ++
Sbjct: 252 YMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTI 311

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           +  +   S ++ L  G+ +H + ++     D  L   LI+MYSKCGS+  A RVF  S  
Sbjct: 312 LGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFR-SIP 370

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            K    W+S++ G G+HG   + + L+++M   G KP  IT +GVL+AC  +G   +   
Sbjct: 371 KKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHR 430

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            +  +   Y IKP+ E   C++D+L RAG L+ A D I+ MP++ +  IW +L+S S  H
Sbjct: 431 YFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKH 490

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
           GN  M + A + LI L P+    YV LSN+YA++  W+ V ++R MMK +G+KK PGCS 
Sbjct: 491 GNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSS 550

Query: 501 ISIHGKTHCFSVADKAHPCSVSIY 524
           I   G  H F V DK+HP +  IY
Sbjct: 551 IEHQGSIHEFIVGDKSHPQTEEIY 574


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 174/505 (34%), Positives = 287/505 (56%), Gaps = 12/505 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQ--PTQSQL-VFNSIQHKDVYLYNSLINGY 96
           KQ+H++IL LG  ++  +++ L+   A+     P+   L ++NSI H  V+  N++I  +
Sbjct: 48  KQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIRCF 107

Query: 97  VKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           VK      ++ L+S+M  S V+ P+  TL  + +       +  G  +    IK+GFV D
Sbjct: 108 VKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKD 167

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQ-RNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           V + N+L+ +Y  C +      +FDE+P  R+V SWN  I G    G  S+   ++++F 
Sbjct: 168 VFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISV---AQKLFV 224

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  ++V +W  +I+G VQNG+L++AL  F E+  + ++ PN+  LVS+L   + L  L 
Sbjct: 225 EMPEKDVISWGTIISGCVQNGELEKALDYFKELG-EQKLRPNEAILVSLLAAAAQLGTLE 283

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK+IH  A         SL  AL+DMY+KCG +D +R +F D    KD  +W+ ++ G 
Sbjct: 284 YGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLF-DRMPEKDKWSWNVMICGL 342

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG G EA+ L+ K +  G  P  +T +GVL+AC R+GL++EG   +  + +TY I+P 
Sbjct: 343 ATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPE 402

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+VD+L RAG +  A++ I  MP  P P +W +++ +  +HG  E+ +     LI
Sbjct: 403 MEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLI 462

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           Q++P +  +YV L+ ++A  R+W+ V+++R +M +R   K  G S I   G+ H F   D
Sbjct: 463 QMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGD 522

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAA 539
           K H  +  IY+ML+  I+ +R AAA
Sbjct: 523 KEHERTTEIYKMLE--IMGVRIAAA 545



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            A +   L  +A   +L+  K+ HS   SL       + T L+  YA CG   +S+ +F+
Sbjct: 266 EAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFD 325

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
            +  KD + +N +I G   +    EAL LF         P + T 
Sbjct: 326 RMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTF 370


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 173/537 (32%), Positives = 279/537 (51%), Gaps = 47/537 (8%)

Query: 2   ILSSARNTFAL--------VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS 53
           +L   RN+F +        +    YT  ++   L+       L+L +Q HSQI+      
Sbjct: 467 LLDDLRNSFRIFRQMQIEEIVPNQYTYPSI---LKTCIRLGDLELGEQIHSQIIKTNFQL 523

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N +V + LI  YA  G+   +  +      KDV  + ++I GY + +  ++AL  F  M 
Sbjct: 524 NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 583

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
              +  D+  L         ++ L  G  IH  +   GF  D+   N+L+++Y +CGK  
Sbjct: 584 DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIE 643

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
           E                                  S   F+Q +  +  AW A+++G+ Q
Sbjct: 644 E----------------------------------SYLAFEQTEAGDNIAWNALVSGFQQ 669

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           +G+ +EAL +F+ M  ++ I+ N  +  S +   S    +  GKQ+H    +   + +  
Sbjct: 670 SGNNEEALRVFVRMN-REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETE 728

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           +CNALI MY+KCGS+  A + F + S  K+ ++W++I++ Y  HG G EA+  +++M+  
Sbjct: 729 VCNALISMYAKCGSISDAEKQFLEVS-TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 787

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
             +P+ +T+VGVLSAC   GL+++G+  + S+ + Y + P  E   CVVDML RAG L R
Sbjct: 788 NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 847

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A +FI+ MP++P   +W  L+SA V+H N E+ + A   L++LEPE+ + YV LSNLYA 
Sbjct: 848 AKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAV 907

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           S++WDA    R  MK++G+KK PG SWI +    H F V D+ HP +  I+E   DL
Sbjct: 908 SKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDL 964



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 190/412 (46%), Gaps = 40/412 (9%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
            SL++ +Q H  +L LG  S+ +V   L++ Y   G    ++ +F+++  +D   YN+LI
Sbjct: 302 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 361

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           NG  +     +A+ELF  M+   + PD  TLA++         L  G  +H  + K+GF 
Sbjct: 362 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFA 421

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +  +  +L+++Y KC      L+ F E    NV  WNV                     
Sbjct: 422 SNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNV--------------------- 460

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                        M+  Y    DL  +  +F +MQ+++ I PN+ +  S+L TC  L  L
Sbjct: 461 -------------MLVAYGLLDDLRNSFRIFRQMQIEE-IVPNQYTYPSILKTCIRLGDL 506

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             G+QIH   I+     +  +C+ LIDMY+K G LD A  +    +  KD ++W+++++G
Sbjct: 507 ELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTTMIAG 565

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y  +    +A+  + +M+  G + D + +   +SAC     + EG +I+     +     
Sbjct: 566 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSS 624

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSE 444
                  +V +  R G+++ +  ++     E   +I W ALVS     GN+E
Sbjct: 625 DLPFQNALVTLYSRCGKIEES--YLAFEQTEAGDNIAWNALVSGFQQSGNNE 674



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 185/406 (45%), Gaps = 39/406 (9%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           T+ SL   ++ HSQIL LG  SN  +S KL   Y   G    +  VF+ +  + ++ +N 
Sbjct: 97  TNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNK 156

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA-TISKLSGEIKDLNVGMLIHGLSIKI 150
           +I      +   E   LF  M   NV+P++ T +  +    G     +V   IH   +  
Sbjct: 157 MIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQ 216

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G     ++ N L+ +Y + G                                   V  +R
Sbjct: 217 GLRDSTVVCNPLIDLYSRNG----------------------------------FVDLAR 242

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           RVFD ++ ++  +W AMI+G  +N    EA+ LF +M +   I P   +  SVL  C  +
Sbjct: 243 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLG-IMPTPYAFSSVLSACKKI 301

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G+Q+HG  ++   + D  +CNAL+ +Y   G+L  A  +F + S  +DA+T++++
Sbjct: 302 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTL 360

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++G    G G +A+ L+ +M   G +PD  T+  ++ AC   G +  G +++ +      
Sbjct: 361 INGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLH-AYTTKLG 419

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
                +I   ++++  +   ++ ALD+     VE +  +W  ++ A
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 464



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 3/185 (1%)

Query: 253 IEPNKVSLVSVLPTCSSLIG-LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
           I PN  +L  +L  C    G L  G+++H   ++  L+ +  L   L D Y   G L  A
Sbjct: 80  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
            +VF++    +   TW+ ++          E   L+ +MV     P+  T  GVL AC  
Sbjct: 140 FKVFDEMP-ERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
             +  + +E  ++ I    ++ +T +C  ++D+  R G +D A      + ++   S W 
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS-WV 257

Query: 432 ALVSA 436
           A++S 
Sbjct: 258 AMISG 262


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 273/489 (55%), Gaps = 41/489 (8%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
            + T L+  YA CG    ++ VF+++  ++   +++LI G+V      +A  LF  M   
Sbjct: 159 LLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ 218

Query: 116 NV---SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
            +   SP   ++A+  +    +  L +G  +H L  K G   D+   NSL+SMY K G  
Sbjct: 219 GLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 276

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            + + LFDE                                  M  ++  +++A+++GYV
Sbjct: 277 DQAIALFDE----------------------------------MAVKDTVSYSALVSGYV 302

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG  +EA ++F +MQ  + +EP+  ++VS++P CS L  L  G+  HG  I + L  + 
Sbjct: 303 QNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASET 361

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           S+CNALIDMY+KCG +D +R+VF     ++D ++W+++++GYG+HG G EA  L+ +M  
Sbjct: 362 SICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 420

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
           LG  PD +T + +LSAC  SGL+ EG   ++ + + Y + P  E   C+VD+L R G LD
Sbjct: 421 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 480

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A +FI++MP+     +W AL+ A  ++ N ++     + + +L PE   N+V LSN+Y+
Sbjct: 481 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 540

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           ++ R+D  AE+R + K +G KKSPGCSWI I+G  H F   D++HP S  IY  LD++++
Sbjct: 541 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILV 600

Query: 533 IMRGAAASP 541
            ++     P
Sbjct: 601 GIKKLGYQP 609



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 167/362 (46%), Gaps = 51/362 (14%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    V+P+++T     K    + D + G  IH  +I  G   D+ ++ +L+ MYVKC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             +  ++F  MP R++ +WN                                  AM+ GY
Sbjct: 61  LPDAAHIFATMPARDLVAWN----------------------------------AMLAGY 86

Query: 232 VQNGDLDEALVLFLEMQLK-DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR----- 285
             +G    A+   L MQ++  R+ PN  +LV++LP  +    L+ G  +H + IR     
Sbjct: 87  AHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHP 146

Query: 286 -----KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
                 +L   V L  AL+DMY+KCGSL  ARRVF D+   ++ +TWS+++ G+ L  + 
Sbjct: 147 NRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVF-DAMPARNEVTWSALIGGFVLCSRM 205

Query: 341 HEAVLLYNKMVCLG-SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
            +A LL+  M+  G       +I   L AC     +  G E  ++++    +        
Sbjct: 206 TQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMG-EQLHALLAKSGVHADLTAGN 264

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL--IQLE 457
            ++ M  +AG +D+A+     M V+ + S + ALVS  V +G +E   L +K +    +E
Sbjct: 265 SLLSMYAKAGLIDQAIALFDEMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 458 PE 459
           P+
Sbjct: 324 PD 325



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 44/310 (14%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A+   L++ +Q H+ +   G  ++      L++ YA  G   Q+  +F+ +  KD 
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             Y++L++GYV+N    EA  +F  M   NV PD  T+ ++      +  L  G   HG 
Sbjct: 292 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 351

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            I  G   +  + N+L+ MY KCG+      +F+ MP R++ SWN               
Sbjct: 352 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT-------------- 397

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                               MI GY  +G   EA  LFLEM       P+ V+ + +L  
Sbjct: 398 --------------------MIAGYGIHGLGKEATALFLEMN-NLGFPPDGVTFICLLSA 436

Query: 267 CSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           CS    +  GK       HG+ +   + H +     ++D+ S+ G LD A    +     
Sbjct: 437 CSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI----CMVDLLSRGGFLDEAYEFIQSMPLR 492

Query: 322 KDAITWSSIV 331
            D   W +++
Sbjct: 493 ADVRVWVALL 502



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 104/269 (38%), Gaps = 17/269 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           +AT+   +   +   +L+  + SH  ++  G  S   +   LI  YA CG+   S+ VFN
Sbjct: 326 AATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFN 385

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLN 138
            +  +D+  +N++I GY  +    EA  LF  M      PD  T +  +S  S     + 
Sbjct: 386 MMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIE 445

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGH 197
                H +    G    +     ++ +  + G   E       MP R +V  W   +   
Sbjct: 446 GKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGAC 505

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
               +  L  +  R+  ++       +  + N Y   G  DEA     E+++  +++  K
Sbjct: 506 RVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEA----AEVRIIQKVQGFK 561

Query: 258 VSLVSVLPTCS------SLIGLSGGKQIH 280
            S     P CS      SL    GG Q H
Sbjct: 562 KS-----PGCSWIEINGSLHAFVGGDQSH 585


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 167/495 (33%), Positives = 268/495 (54%), Gaps = 37/495 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LK  K  H  +L+     +  +   L+  YA CG    ++ +F+ + H+D+  + S+I G
Sbjct: 90  LKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITG 149

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           Y +N   ++AL LF  M      P++FTL+++ K  G +   N G  IH    K G   +
Sbjct: 150 YAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSN 209

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V + +SL+ MY +CG   E + +FD++  +N  SWN  I+G                   
Sbjct: 210 VFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAG------------------- 250

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                          Y + G+ +EAL LF+ MQ ++   P + +  ++L +CSS+  L  
Sbjct: 251 ---------------YARKGEGEEALALFVRMQ-REGYRPTEFTYSALLSSCSSMGCLEQ 294

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK +H   ++        + N L+ MY+K GS+  A +VF D     D ++ +S++ GY 
Sbjct: 295 GKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVF-DKLVKVDVVSCNSMLIGYA 353

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            HG G EA   +++M+  G +P+ IT + VL+AC  + L++EG + Y  ++  Y I+P  
Sbjct: 354 QHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEG-KHYFGLMRKYNIEPKV 412

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
              A +VD+LGRAG LD+A  FI+ MP+EP+ +IWGAL+ AS MH N+EM   A + + +
Sbjct: 413 SHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFE 472

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           L+P  P  +  L+N+YAS+ RW+ VA++R +MKD G+KK P CSW+ +    H F   D 
Sbjct: 473 LDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDV 532

Query: 516 AHPCSVSIYEMLDDL 530
           AHP    I++M + L
Sbjct: 533 AHPQKEKIHKMWEKL 547



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 130/263 (49%), Gaps = 36/263 (13%)

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
           ++ PD     T+ K   ++  L  G L+H   +   F  D+++ NSL+ MY +CG     
Sbjct: 69  SLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGA 128

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
             LFDEMP R++ SW                                  T+MI GY QN 
Sbjct: 129 RRLFDEMPHRDMVSW----------------------------------TSMITGYAQND 154

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
              +AL+LF  M L D  EPN+ +L S++  C  +   + G+QIH    +   + +V + 
Sbjct: 155 RASDALLLFPRM-LSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVG 213

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           ++L+DMY++CG L  A  VF D    K+ ++W+++++GY   G+G EA+ L+ +M   G 
Sbjct: 214 SSLVDMYARCGYLGEAMLVF-DKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGY 272

Query: 356 KPDIITIVGVLSACGRSGLINEG 378
           +P   T   +LS+C   G + +G
Sbjct: 273 RPTEFTYSALLSSCSSMGCLEQG 295



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 112/213 (52%), Gaps = 4/213 (1%)

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           +EP++    ++L  C+ L  L  GK +H   +     HD+ + N+L+ MY++CGSL+ AR
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGAR 129

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           R+F D   ++D ++W+S+++GY  + +  +A+LL+ +M+  G++P+  T+  ++  CG  
Sbjct: 130 RLF-DEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYM 188

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
              N G +I+ +    Y       + + +VDM  R G L  A+     +  +   S W A
Sbjct: 189 ASYNCGRQIH-ACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS-WNA 246

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
           L++     G  E + LA    +Q E   P+ + 
Sbjct: 247 LIAGYARKGEGE-EALALFVRMQREGYRPTEFT 278



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 1/173 (0%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T    L   ++   L+  K  H+ ++        +V   L+  YA  G    ++ VF
Sbjct: 275 TEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVF 334

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +   DV   NS++ GY ++    EA + F  M    + P+D T  ++       + L+
Sbjct: 335 DKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLD 394

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSW 190
            G    GL  K      V    +++ +  + G   +  +  +EMP +  V  W
Sbjct: 395 EGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIW 447


>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Brachypodium distachyon]
          Length = 500

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 155/411 (37%), Positives = 241/411 (58%), Gaps = 9/411 (2%)

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           A I  L G      +G  +H + ++ G   D  ++ SL+  Y  CG+ +   ++FD+   
Sbjct: 78  AKIPHLRG-----TLGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTD 132

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           +++  WNV ISG+  SG+ +    +R +FD M  RNV +WT +I  Y Q     EA+ +F
Sbjct: 133 KDIFCWNVMISGYVKSGNLAC---ARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVF 189

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
             MQ+++ IEP+ V+L+SVL  C  L  +  G+ +H F +R+ L   + L NA+IDMY K
Sbjct: 190 RRMQVEEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVK 249

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
            G +  A  VFE     K  +TW+++++G+ LHG G EA+ ++ +M      P+ +T + 
Sbjct: 250 LGCVRKAVEVFEGMD-QKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLA 308

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
           +LSAC   GL + G   +  +++ YRIK   E   C+VD+LGRAG L  A D ++ MP +
Sbjct: 309 ILSACSHVGLTDLGRWYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFK 368

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484
            + +IWGAL++A+  HG++E+   A   LI+LEP N  NY+ LSN+YA   RWD V++LR
Sbjct: 369 ANAAIWGALLAAARTHGDAELGKQALLHLIELEPHNSGNYILLSNIYAEQERWDDVSKLR 428

Query: 485 TMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
             MKDRGL+  PG S I + G  H F+  D +HPC   I ++L ++   M+
Sbjct: 429 KQMKDRGLRNVPGASSIEVDGMVHEFTSRDGSHPCLHKICKVLCEITTDMK 479



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 150/349 (42%), Gaps = 81/349 (23%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L  Q HS I+  G  S+  VS  LI  Y  CG+   ++ VF+    KD++ +N +I+GYV
Sbjct: 87  LGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGYV 146

Query: 98  KNHGHNEALELFSNMYYSNV--------------------------------SPDDFTLA 125
           K+     A ELF  M   NV                                 PD   L 
Sbjct: 147 KSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALL 206

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           ++    G++  +++G  +H   ++ G    + L N+++ MYVK G   + + +F+ M Q+
Sbjct: 207 SVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQK 266

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
           +V +W   I+G A  G   L                                 EA+ +F 
Sbjct: 267 SVVTWTTVIAGFALHG-LGL---------------------------------EAIEMFR 292

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSG-GK-----QIHGFAIRKELNHDVSLCNALI 299
            M++++ + PN V+ +++L  CS  +GL+  G+      +  + I++ + H       ++
Sbjct: 293 RMEMEN-VAPNDVTFLAILSACSH-VGLTDLGRWYFKIMVSQYRIKQRVEH----YGCMV 346

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHEAVL 345
           D+  + G L  A+ + +D  F  +A  W ++++    HG    G +A+L
Sbjct: 347 DLLGRAGYLMEAQDLVQDMPFKANAAIWGALLAAARTHGDAELGKQALL 395


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 267/458 (58%), Gaps = 15/458 (3%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +I AY    Q   +  +F  +  KD   + ++INGYV+     +A E+ + M Y N++  
Sbjct: 270 MIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQ 329

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
              +    + SG + + N   +   +S++     D +  NS+++ Y  CG+  E L LF 
Sbjct: 330 TAMINGYLQ-SGRMDEAN--EIFSQISVR-----DSVCWNSMITGYAHCGRTDEALRLFQ 381

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           EM  +++ SWN  I+ +A +G      ++  +F++M+ RNV +W ++I GYVQNG   EA
Sbjct: 382 EMVCKDMVSWNTMIAAYAQAGQMD---KALEMFNEMQERNVVSWNSLITGYVQNGLYFEA 438

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L  F+ M+ +   +P++ ++V  L   ++L  L+ G Q+H   I+    +D+ + NA++ 
Sbjct: 439 LNCFILMKQQGE-KPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILT 497

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY+K G +  A  VF +   NKD ++W+S+++GY L+G G EAV L+  M   G  PD +
Sbjct: 498 MYAKSGRVPEAENVFAEIK-NKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEV 556

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T  G+LSAC   G +++GL ++ S+  TY IKP +E  ACV+++LGR G+L+ A++ ++ 
Sbjct: 557 TFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQG 616

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           M    S  IWGAL+ A  +H N E+   + + L+ LEP+N SNYV LSN++A + RWD V
Sbjct: 617 MKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMV 676

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
             +R +MK+   +K PGCSWI I  + HCF    KA P
Sbjct: 677 ERVRVLMKENKAEKQPGCSWIEIDNQLHCF--LSKAPP 712



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 187/387 (48%), Gaps = 38/387 (9%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           +++AR  F L+  RN  S  + +  +L       + +L  +   +        + +  T 
Sbjct: 62  IANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKR--------DIYSWTL 113

Query: 61  LITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           +IT Y   G+  +++ +FN +  K D    N+LI GY K     EA +LF  M   NV  
Sbjct: 114 MITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNV-- 171

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-VVDVILANSLMSMYVKCGKFSECLNL 178
               ++  S LSG  K+   G +  GL         +V+  N ++  YV  G        
Sbjct: 172 ----VSWNSILSGYTKN---GKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMF 224

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F ++P  NV SW   +SG A  G  +    +R +F++M  +N+ +W AMI  YV+   +D
Sbjct: 225 FKKIPTPNVVSWVTMLSGFAHYGRMT---EARNLFNEMPTKNLVSWNAMIGAYVRENQID 281

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           +A  LF+EM  KD      VS  +++     +  L   ++I      K    +++   A+
Sbjct: 282 DAYKLFMEMPEKD-----SVSWTAMINGYVRVGKLLQAREILNLMPYK----NIAAQTAM 332

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           I+ Y + G +D A  +F   S  +D++ W+S+++GY   G+  EA+ L+ +MVC     D
Sbjct: 333 INGYLQSGRMDEANEIFSQISV-RDSVCWNSMITGYAHCGRTDEALRLFQEMVC----KD 387

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSV 385
           +++   +++A  ++G +++ LE++N +
Sbjct: 388 MVSWNTMIAAYAQAGQMDKALEMFNEM 414



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 171/361 (47%), Gaps = 41/361 (11%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +++  NS++S Y K G+ +    LFD MPQRN+ SWN  I+G+  +    LV  + R+FD
Sbjct: 45  NIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHN---ELVEDAARLFD 101

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC-SSLIGL 273
           +M +R++Y+WT MI  Y + G+L++A  LF        + P+K   V     C ++LI  
Sbjct: 102 RMFKRDIYSWTLMITCYTRIGELEKARELF-------NLLPDKQDTV-----CRNALIAG 149

Query: 274 SGGKQIHGFAIR---KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
              K++   A +   + L  +V   N+++  Y+K G +    + FE     ++ ++W+ +
Sbjct: 150 YAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMG-ERNVVSWNLM 208

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           V GY   G    A + + K+      P++++ V +LS     G + E   ++N +     
Sbjct: 209 VDGYVGVGDLDSAWMFFKKI----PTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNL 264

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           +     I A V     R  Q+D A      MP + S S W A+++  V  G    + L  
Sbjct: 265 VSWNAMIGAYV-----RENQIDDAYKLFMEMPEKDSVS-WTAMINGYVRVG----KLLQA 314

Query: 451 KSLIQLEP-ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS-IHGKTH 508
           + ++ L P +N +   ++ N Y  S R D   E+ + +  R         W S I G  H
Sbjct: 315 REILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVR-----DSVCWNSMITGYAH 369

Query: 509 C 509
           C
Sbjct: 370 C 370



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 129/290 (44%), Gaps = 48/290 (16%)

Query: 3   LSSARNTFALVTSRNYTSAT--VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           L  AR    L+  +N  + T  +  +LQ      +        ++I S   + +      
Sbjct: 311 LLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEA--------NEIFSQISVRDSVCWNS 362

Query: 61  LITAYALC-------------------------------GQPTQSQLVFNSIQHKDVYLY 89
           +IT YA C                               GQ  ++  +FN +Q ++V  +
Sbjct: 363 MITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSW 422

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           NSLI GYV+N  + EAL  F  M      PD  T+    + S  +  LNVG+ +H L+IK
Sbjct: 423 NSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIK 482

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            GF  D+ + N++++MY K G+  E  N+F E+  ++V SWN  I+G+A +G     V  
Sbjct: 483 TGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAV-- 540

Query: 210 RRVFDQMKRRNV----YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
             +F+ M  R +      +T +++     G +D+ L LF  M     I+P
Sbjct: 541 -ELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKP 589


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 167/485 (34%), Positives = 273/485 (56%), Gaps = 36/485 (7%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           V+T ++ AY  CG    +++VF+ +  K+   +N++I+GY +N    EAL LF+ M    
Sbjct: 198 VATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEG 257

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           V   D ++    +  GE+  L+ GM +H L ++IG   +V + N+L++MY KC +     
Sbjct: 258 VDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKR----- 312

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
                          V ++ H              VFD++ RR   +W AMI G  QNG 
Sbjct: 313 ---------------VDLASH--------------VFDELDRRTQVSWNAMILGCAQNGC 343

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
            ++A+ LF  MQL++ ++P+  +LVSV+P  + +      + IHG++IR  L+ DV +  
Sbjct: 344 SEDAVRLFTRMQLEN-VKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           ALIDMY+KCG ++ AR +F +S+  +  ITW++++ GYG HG G  AV L+ +M  +G  
Sbjct: 403 ALIDMYAKCGRVNIARILF-NSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIV 461

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           P+  T + VLSAC  +GL++EG E + S+   Y ++P  E    +VD+LGRAG+LD A  
Sbjct: 462 PNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWA 521

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
           FI+ MP++P  S++GA++ A  +H N E+ + + + + +L P+    +V L+N+YA++  
Sbjct: 522 FIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASM 581

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRG 536
           W  VA +RT M+  GL+K+PG S I +  + H F      H  +  IY  L  LI  ++ 
Sbjct: 582 WKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKA 641

Query: 537 AAASP 541
               P
Sbjct: 642 VGYVP 646



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 171/364 (46%), Gaps = 38/364 (10%)

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           AL  F  M  +   P   T  ++ KL     DL  G  +H      G   + + A +L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MY KC + ++                                  +RRVFD+M  R+  AW
Sbjct: 103 MYAKCRRPAD----------------------------------ARRVFDRMPVRDRVAW 128

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            A++ GY +NG    A+ + + MQ ++   P+ ++LVSVLP C++   L+  ++ H FAI
Sbjct: 129 NALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAI 188

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R  L   V++  A++D Y KCG +  AR VF D    K++++W++++ GY  +G   EA+
Sbjct: 189 RSGLEELVNVATAILDAYCKCGDIRAARVVF-DWMPTKNSVSWNAMIDGYAQNGDSREAL 247

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+N+MV  G     ++++  L ACG  G ++EG+ ++  ++    +     +   ++ M
Sbjct: 248 ALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRI-GLDSNVSVMNALITM 306

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
             +  ++D A      +      S W A++     +G SE   +   + +QLE   P ++
Sbjct: 307 YSKCKRVDLASHVFDELDRRTQVS-WNAMILGCAQNGCSE-DAVRLFTRMQLENVKPDSF 364

Query: 465 VSLS 468
             +S
Sbjct: 365 TLVS 368



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 7/243 (2%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           + T  +V   LQ       L    + H  ++ +G  SN  V   LIT Y+ C +   +  
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ +  +    +N++I G  +N    +A+ LF+ M   NV PD FTL ++     +I D
Sbjct: 319 VFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISD 378

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
                 IHG SI++    DV +  +L+ MY KCG+ +    LF+   +R+V +WN  I G
Sbjct: 379 PLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHG 438

Query: 197 HASSGDFSLVVRSRRVFDQMKR----RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
           + S G     V    +F++MK      N   + ++++     G +DE    F  M+    
Sbjct: 439 YGSHGFGKAAV---ELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYG 495

Query: 253 IEP 255
           +EP
Sbjct: 496 LEP 498


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 273/489 (55%), Gaps = 41/489 (8%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
            + T L+  YA CG    ++ VF+++  ++   +++LI G+V      +A  LF  M   
Sbjct: 274 LLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ 333

Query: 116 NV---SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
            +   SP   ++A+  +    +  L +G  +H L  K G   D+   NSL+SMY K G  
Sbjct: 334 GLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 391

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            + + LFDE                                  M  ++  +++A+++GYV
Sbjct: 392 DQAIALFDE----------------------------------MAVKDTVSYSALVSGYV 417

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG  +EA ++F +MQ  + +EP+  ++VS++P CS L  L  G+  HG  I + L  + 
Sbjct: 418 QNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASET 476

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           S+CNALIDMY+KCG +D +R+VF     ++D ++W+++++GYG+HG G EA  L+ +M  
Sbjct: 477 SICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 535

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
           LG  PD +T + +LSAC  SGL+ EG   ++ + + Y + P  E   C+VD+L R G LD
Sbjct: 536 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 595

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A +FI++MP+     +W AL+ A  ++ N ++     + + +L PE   N+V LSN+Y+
Sbjct: 596 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 655

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           ++ R+D  AE+R + K +G KKSPGCSWI I+G  H F   D++HP S  IY  LD++++
Sbjct: 656 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILV 715

Query: 533 IMRGAAASP 541
            ++     P
Sbjct: 716 GIKKLGYQP 724



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 188/407 (46%), Gaps = 53/407 (13%)

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH--GHNEALELFSNMYYSNVSPDDFTLAT 126
           G  +++  +F+ I   DV  YN LI  Y  +      + L L+  M    V+P+++T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
             K    + D + G  IH  +I  G   D+ ++ +L+ MYVKC    +  ++F  MP R+
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           + +WN                                  AM+ GY  +G    A+   L 
Sbjct: 191 LVAWN----------------------------------AMLAGYAHHGMYHHAVAHLLS 216

Query: 247 MQLK-DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR----------KELNHDVSLC 295
           MQ++  R+ PN  +LV++LP  +    L+ G  +H + IR           +L   V L 
Sbjct: 217 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLG 276

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG- 354
            AL+DMY+KCGSL  ARRVF D+   ++ +TWS+++ G+ L  +  +A LL+  M+  G 
Sbjct: 277 TALLDMYAKCGSLLYARRVF-DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL 335

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
                 +I   L AC     +  G +++ +++    +         ++ M  +AG +D+A
Sbjct: 336 CFLSPTSIASALRACASLDHLRMGEQLH-ALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL--IQLEPE 459
           +     M V+ + S + ALVS  V +G +E   L +K +    +EP+
Sbjct: 395 IALFDEMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 440



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 44/310 (14%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A+   L++ +Q H+ +   G  ++      L++ YA  G   Q+  +F+ +  KD 
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             Y++L++GYV+N    EA  +F  M   NV PD  T+ ++      +  L  G   HG 
Sbjct: 407 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 466

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            I  G   +  + N+L+ MY KCG+      +F+ MP R++ SWN               
Sbjct: 467 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT-------------- 512

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                               MI GY  +G   EA  LFLEM       P+ V+ + +L  
Sbjct: 513 --------------------MIAGYGIHGLGKEATALFLEMN-NLGFPPDGVTFICLLSA 551

Query: 267 CSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           CS    +  GK       HG+ +   + H +     ++D+ S+ G LD A    +     
Sbjct: 552 CSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI----CMVDLLSRGGFLDEAYEFIQSMPLR 607

Query: 322 KDAITWSSIV 331
            D   W +++
Sbjct: 608 ADVRVWVALL 617



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 98/254 (38%), Gaps = 17/254 (6%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  + SH  ++  G  S   +   LI  YA CG+   S+ VFN +  +D+  +N++I 
Sbjct: 456 ALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA 515

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           GY  +    EA  LF  M      PD  T +  +S  S     +      H +    G  
Sbjct: 516 GYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLT 575

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVRSRRV 212
             +     ++ +  + G   E       MP R +V  W   +       +  L  +  R+
Sbjct: 576 PRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRM 635

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS---- 268
             ++       +  + N Y   G  DEA     E+++  +++  K S     P CS    
Sbjct: 636 IQELGPEGTGNFVLLSNIYSAAGRFDEA----AEVRIIQKVQGFKKS-----PGCSWIEI 686

Query: 269 --SLIGLSGGKQIH 280
             SL    GG Q H
Sbjct: 687 NGSLHAFVGGDQSH 700


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 159/490 (32%), Positives = 281/490 (57%), Gaps = 6/490 (1%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T +I+  A  G  + ++L+      +DV  + SLI  Y +     EA++ F NM    ++
Sbjct: 116 TMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIA 175

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           PDD T+  +     ++KDL +G  +H L  + G  +   L  +L+ MY KCG F     +
Sbjct: 176 PDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREV 235

Query: 179 FDEMPQ-RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           FD + + R   SWN  I G+   G   +   +R +FDQM+ R++  + +MI GY+ +G L
Sbjct: 236 FDAVGRGRRPQSWNAIIDGYCKHGHVDV---ARSLFDQMEVRDIITFNSMITGYIHSGQL 292

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
            EAL+LF+ M+  D +  +  ++VS+L  C+SL  L  G+ +H     + +  D+ +  A
Sbjct: 293 REALLLFMNMRRHD-LRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTA 351

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           L+DMY KCG ++ A  VF+     +D   W+++++G   +G G   +  + +M C G +P
Sbjct: 352 LLDMYMKCGRVNEATIVFQRMG-KRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQP 410

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           + ++ + VL+AC  S L+NEG   ++ +   Y I P  E   C++D+LGR+G LD A+D 
Sbjct: 411 NPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDL 470

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
           +KTMP++P+  IW +++SA  +H   ++   A + L+++EP+  + YV L N+   SR+W
Sbjct: 471 VKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKW 530

Query: 478 DAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGA 537
           +  +++R +M++R +KK+ G S +++ G+ H F V+DK+HP  + I  ML+++   ++ A
Sbjct: 531 EDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSA 590

Query: 538 AASPHLGKMT 547
             SP   ++T
Sbjct: 591 GYSPITSQVT 600



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/464 (22%), Positives = 208/464 (44%), Gaps = 40/464 (8%)

Query: 36   LKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
            L+  +Q H  +L  G I SN F+S  L+  Y+  G    +    N I  +DV  +NS+++
Sbjct: 849  LEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILS 908

Query: 95   GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
             Y       EA+     M +    P   +  ++  LSG+  D  +G+ IHG+  K+GF  
Sbjct: 909  MYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSC 968

Query: 155  DVI-LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
              + +  +L+ MY KC  F   L +F+E+P   +   N  I+       F          
Sbjct: 969  SSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLGCNMF---------- 1018

Query: 214  DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP--TCSSLI 271
                                     +A +  L   + + + P+ V+  + +   + S+  
Sbjct: 1019 -------------------------DAALEILHCMIVEGVTPDDVTFSATMKAISLSASP 1053

Query: 272  GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
             L+  + +H   ++     D+++C++LI  Y+  G L  +  +FE    + + I +++I+
Sbjct: 1054 SLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFE-GLLDPNVICFTAII 1112

Query: 332  SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            S    +G G  A+ L+++MV  G KPD +T +  ++ C ++G+  EG  +   +  +  +
Sbjct: 1113 SACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASREL 1172

Query: 392  KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
             P     AC+V++L R G +  A++ ++  P+      W +L+ +   HG + +   A  
Sbjct: 1173 DPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAAN 1232

Query: 452  SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
             LI +  ++P+  + +SN +      +    ++ M   + +KKS
Sbjct: 1233 MLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKKS 1276



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 181/397 (45%), Gaps = 46/397 (11%)

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNV-GMLIHGLSIKIGFV-VDVILANSLMSM 165
           LF  M  + V PD FT   + K S   +   +   ++H   ++         +ANSL+ M
Sbjct: 31  LFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIHM 90

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y + G   +    FDE+P ++  SW + ISG A  G  S    +R +  Q   R+V +WT
Sbjct: 91  YTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLS---DARLLLAQAPVRDVISWT 147

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           ++I  Y +     EA+  F  M L + I P+ V+++ VL  CS L  L  G  +H     
Sbjct: 148 SLIAAYSRADRAKEAVDCFKNM-LSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKE 206

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFE-------DSSFN----------------- 321
           K ++   +L  ALIDMY+KCG    AR VF+         S+N                 
Sbjct: 207 KGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARS 266

Query: 322 -------KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
                  +D IT++S+++GY   G+  EA+LL+  M     + D  T+V +LSAC   G 
Sbjct: 267 LFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGA 326

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           + +G  ++ + I    ++    I   ++DM  + G+++ A    + M  +     W A++
Sbjct: 327 LPQGRALH-ACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMG-KRDVHAWTAMI 384

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPE----NPSNYVSL 467
           +    +G   M     +   Q+  +    NP +Y+++
Sbjct: 385 AGLAFNG---MGKAGLEYFYQMRCDGFQPNPVSYIAV 418



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 143/352 (40%), Gaps = 70/352 (19%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   +  + L+L    H  +   G   +  +   LI  YA CG    ++ VF+++
Sbjct: 180 TVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAV 239

Query: 82  --------------------------------QHKDVYLYNSLINGYVKNHGHNEALELF 109
                                           + +D+  +NS+I GY+ +    EAL LF
Sbjct: 240 GRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLF 299

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSLMSMYVK 168
            NM   ++  D+FT+ ++      +  L  G  +H   I++  V  D+ +  +L+ MY+K
Sbjct: 300 MNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHA-CIELRLVETDIYIGTALLDMYMK 358

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG+ +E   +F  M +R+V +W                                  TAMI
Sbjct: 359 CGRVNEATIVFQRMGKRDVHAW----------------------------------TAMI 384

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK-QIHGFAIRKE 287
            G   NG     L  F +M+  D  +PN VS ++VL  CS    L+ G+       I   
Sbjct: 385 AGLAFNGMGKAGLEYFYQMRC-DGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYN 443

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           ++  +     +ID+  + G LD A  + +      +++ W+SI+S   +H +
Sbjct: 444 IHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKR 495



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 148/345 (42%), Gaps = 50/345 (14%)

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           +DV   N +I G++++   + A  ++  M  S +     T +TI  +    + L     +
Sbjct: 698 RDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ----L 753

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HG  + +G   +  + ++L++ Y+        L+LF E+P +N    NV + G    G+ 
Sbjct: 754 HGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRG---LGNL 810

Query: 204 SLVVRSRRVFDQMKRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
            L       F  M+R+    N  ++   + G  QNG+                       
Sbjct: 811 KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEW---------------------- 848

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCG-SLDCARRVFED 317
                        L  G+Q+HG  ++   +  ++ L N+L+D+YS  G S+D  + +  +
Sbjct: 849 -------------LEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKAL--N 893

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
              ++D I+W+SI+S Y   G   EAV    +M+  G  P + + V +L+  G++G    
Sbjct: 894 DILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQL 953

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
           G++I+  V        +  +   ++DM G+    D +L     +P
Sbjct: 954 GVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIP 998



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 137/341 (40%), Gaps = 39/341 (11%)

Query: 26   FLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
             L +S      +L  Q H  +  LG   S+  V T LI  Y  C     S  +FN I   
Sbjct: 941  LLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSI 1000

Query: 85   DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL-ATISKLS-GEIKDLNVGML 142
             +   NSLI   +  +  + ALE+   M    V+PDD T  AT+  +S      L    +
Sbjct: 1001 ALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQM 1060

Query: 143  IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
            +H   +K+GF +D+ + +SL++ Y   G+ S    +F+ +   NV  +   IS  A  GD
Sbjct: 1061 LHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGD 1120

Query: 203  FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
             +   R+  +FDQM               V +G                 ++P+ V+ + 
Sbjct: 1121 GA---RAMELFDQM---------------VSSG-----------------LKPDNVTFLC 1145

Query: 263  VLPTCSSLIGLSGGKQ-IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
             +  C        G+  I      +EL+ D      ++++ S+ G +  A  + E S   
Sbjct: 1146 AIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLR 1205

Query: 322  KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362
                 WSS++     HG+        N ++ +G K    T+
Sbjct: 1206 HYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTL 1246



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 25/242 (10%)

Query: 13   VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
            VT  + T +     + +SA+  SL   +  HS ++ LG   +  V + LITAYA  GQ +
Sbjct: 1033 VTPDDVTFSATMKAISLSASP-SLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLS 1091

Query: 73   QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLS 131
             S L+F  +   +V  + ++I+   +      A+ELF  M  S + PD+ T L  I+   
Sbjct: 1092 SSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCD 1151

Query: 132  GEIKDLNVGMLIHGLSIKIGFVVDVILANS-----------LMSMYVKCGKFSECLNLFD 180
                    GM   G       V++++ A+            ++++  + G   E + + +
Sbjct: 1152 ------QAGMFEEG-----RLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMME 1200

Query: 181  EMPQRN-VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
            + P R+   +W+  +    + G+  L  R+  +   + R++      + N +   GD + 
Sbjct: 1201 QSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRET 1260

Query: 240  AL 241
            AL
Sbjct: 1261 AL 1262


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 169/530 (31%), Positives = 295/530 (55%), Gaps = 44/530 (8%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGH--ISNPFVSTKLITAYALCGQPTQSQLVFN 79
           ++  FL    + RSL+  ++ H  +L   +  + NP + TKLIT Y++CG+  +++ VF 
Sbjct: 72  SISLFLHACISRRSLEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQ 131

Query: 80  SIQHK--DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
               K  +  ++ ++  GY +N   +EAL L+ +M    V P +F  +   K   ++ + 
Sbjct: 132 IDDEKPPEEPVWVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNA 191

Query: 138 NVGMLIHGLSIK--IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
            VG  IH   +K  +G   D ++ N+L+ +YV+ G F E L                   
Sbjct: 192 LVGRAIHAQIVKHDVG-EADQVVNNALLGLYVEIGCFDEVL------------------- 231

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                          +VF++M +RNV +W  +I G+   G + E L  F  MQ ++ +  
Sbjct: 232 ---------------KVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQ-REGMGF 275

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           + ++L ++LP C+ +  L  GK+IHG  ++   N DV L N+L+DMY+KCG +    +VF
Sbjct: 276 SWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVF 335

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D   +KD  +W+++++G+ ++G+ HEA+ L+++M+  G +P+ IT V +LS C  SGL 
Sbjct: 336 -DRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLT 394

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           +EG  ++++V+  + ++P+ E  AC+VD+LGR+G+ D AL   + +P+ PS SIWG+L++
Sbjct: 395 SEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLN 454

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
           +  ++GN  + ++  + L ++EP NP NYV LSN+YA++  W+ V  +R MM   G+KK 
Sbjct: 455 SCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMKKD 514

Query: 496 PGCSWISIHGKTHCFSVADKA-HPCSVSIYEMLDDLILIMRGAAASPHLG 544
            GCSWI I  K H F     +   CS    ++ ++L   ++     P+ G
Sbjct: 515 AGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAVKNLGYVPNTG 564



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 17/217 (7%)

Query: 235 GDLDEALVLFLEMQLKDRIEPNKV-------SLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           G+LD+AL      +L +  +P  +       S+   L  C S   L  G+++H   +R +
Sbjct: 47  GNLDKAL------RLIESSKPTPIEEEEEEESISLFLHACISRRSLEHGRKLHLHLLRSQ 100

Query: 288 --LNHDVSLCNALIDMYSKCGSLDCARRVFE-DSSFNKDAITWSSIVSGYGLHGKGHEAV 344
             +  + +L   LI +YS CG ++ ARRVF+ D     +   W ++  GY  +G  HEA+
Sbjct: 101 NRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYSRNGFSHEAL 160

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
           LLY  M+    KP        L AC        G  I+  ++     +    +   ++ +
Sbjct: 161 LLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGL 220

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
               G  D  L   + MP     S W  L++     G
Sbjct: 221 YVEIGCFDEVLKVFEEMPQRNVVS-WNTLIAGFAGQG 256


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 181/494 (36%), Positives = 277/494 (56%), Gaps = 24/494 (4%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q   Q+    HIS     T L+  +   G+  +++ +F+ +  KDV  + ++++GY +  
Sbjct: 133 QLFRQMPERNHIS----YTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVG 188

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV---DVI 157
             +EA  LF  M   NV      ++  + +SG  ++  V      L+ K+  V+   + +
Sbjct: 189 RVDEARTLFDEMPKRNV------VSWTAMVSGYAQNGQVN-----LARKLFEVMPERNEV 237

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
              +++  Y++ G+  +   LF+ MP   + + N  I G    G   +V  ++ VFD+M 
Sbjct: 238 SWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQG---MVDAAKSVFDRMC 294

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            R+   W+A+I  Y QN  L EAL  F EM L   I PN  S++S+L  C++L  L  G+
Sbjct: 295 ERDDGTWSAIIKAYEQNEFLMEALSTFREM-LHIGIRPNYPSVISILTVCAALAVLDYGR 353

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           ++HG  +R+  + D+   +ALI MY KCG+LD A+RVF      KD + W+S+++GY  H
Sbjct: 354 EVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFE-PKDVVMWNSMITGYAQH 412

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G G EA+ +++ M   G  PD IT +G L+AC  +G + EG +I+NS+     IKP  E 
Sbjct: 413 GLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEH 472

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            AC+VD+LGRAG +D AL  IKTMPVEP   IWGAL+ A  MH N+E+ +++ K L++LE
Sbjct: 473 YACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELE 532

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK-A 516
           P N   YV LS++Y SS RW+  + +R  +  R L KS GCSWI    + H F   D  A
Sbjct: 533 PGNAGPYVLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCSWIEYDKRVHLFKSGDVLA 592

Query: 517 HPCSVSIYEMLDDL 530
           H    SI +ML+ L
Sbjct: 593 HQEHASILKMLEKL 606



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 189/396 (47%), Gaps = 45/396 (11%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY-VKNHGHNEALELFSNMYYSNVSP 119
           L+  Y     P  +  VF+ +  +D+  YN+LI+G  ++ H   +A    + + Y   S 
Sbjct: 54  LLAGYFRNHLPDAALRVFHRMPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPP-SV 112

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSI--------KIGFVVDVILANSLMSMYVKCGK 171
             FT    S L G ++    G+L   + +         I + V       L+  ++  G+
Sbjct: 113 VSFT----SLLRGYVRH---GLLADAIQLFRQMPERNHISYTV-------LLGGFLDAGR 158

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             E   LFDEMP ++V +W   +SG+   G    V  +R +FD+M +RNV +WTAM++GY
Sbjct: 159 VDEARKLFDEMPAKDVVAWTAMLSGYCQVGR---VDEARTLFDEMPKRNVVSWTAMVSGY 215

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QNG ++ A  LF  M      E N+VS  ++L        +   +++         +H 
Sbjct: 216 AQNGQVNLARKLFEVMP-----ERNEVSWTAMLFGYIQAGRIEDAEEL----FNAMPDHP 266

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           ++ CN +I  + + G +D A+ VF D    +D  TWS+I+  Y  +    EA+  + +M+
Sbjct: 267 LAACNGMIVGFGQQGMVDAAKSVF-DRMCERDDGTWSAIIKAYEQNEFLMEALSTFREML 325

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAG 409
            +G +P+  +++ +L+ C    +++ G E++ +++   R     +I A   ++ M  + G
Sbjct: 326 HIGIRPNYPSVISILTVCAALAVLDYGREVHGAML---RRSFDMDIYAVSALITMYIKCG 382

Query: 410 QLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSE 444
            LD+A         EP   + W ++++    HG  E
Sbjct: 383 NLDKAKRVFHMF--EPKDVVMWNSMITGYAQHGLGE 416



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 130/290 (44%), Gaps = 42/290 (14%)

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           V+ AN+ ++   + G        F+ MP R   S+N  ++G+  +    L   + RVF +
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRN---HLPDAALRVFHR 73

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  R++ ++ A+I+G                + L+    P+  + ++ +P   S++  + 
Sbjct: 74  MPTRDLASYNALISG----------------LSLRRHTLPDAAAALATIPYPPSVVSFTS 117

Query: 276 ---GKQIHG--------FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
              G   HG        F    E NH +S    L+  +   G +D AR++F D    KD 
Sbjct: 118 LLRGYVRHGLLADAIQLFRQMPERNH-ISY-TVLLGGFLDAGRVDEARKLF-DEMPAKDV 174

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           + W++++SGY   G+  EA  L+++M     K ++++   ++S   ++G +N   +++  
Sbjct: 175 VAWTAMLSGYCQVGRVDEARTLFDEM----PKRNVVSWTAMVSGYAQNGQVNLARKLFEV 230

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +     +  T  +   +     +AG+++ A +    MP  P  +  G +V
Sbjct: 231 MPERNEVSWTAMLFGYI-----QAGRIEDAEELFNAMPDHPLAACNGMIV 275



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 7/184 (3%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           LS+ R    +    NY S  V   L V A    L   ++ H  +L      + +  + LI
Sbjct: 318 LSTFREMLHIGIRPNYPS--VISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALI 375

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
           T Y  CG   +++ VF+  + KDV ++NS+I GY ++    EAL +F +M  + + PD  
Sbjct: 376 TMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGI 435

Query: 123 TLA---TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           T     T    +G++K+     + + +  K G    +     ++ +  + G   E L L 
Sbjct: 436 TYIGALTACSYTGKVKEGRD--IFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLI 493

Query: 180 DEMP 183
             MP
Sbjct: 494 KTMP 497


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 167/485 (34%), Positives = 273/485 (56%), Gaps = 36/485 (7%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           V+T ++ AY  CG    +++VF+ +  K+   +N++I+GY +N    EAL LF+ M    
Sbjct: 198 VATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEG 257

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           V   D ++    +  GE+  L+ GM +H L ++IG   +V + N+L++MY KC +     
Sbjct: 258 VDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKR----- 312

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
                          V ++ H              VFD++ RR   +W AMI G  QNG 
Sbjct: 313 ---------------VDLASH--------------VFDELDRRTQVSWNAMILGCAQNGC 343

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
            ++A+ LF  MQL++ ++P+  +LVSV+P  + +      + IHG++IR  L+ DV +  
Sbjct: 344 SEDAVRLFTRMQLEN-VKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           ALIDMY+KCG ++ AR +F +S+  +  ITW++++ GYG HG G  AV L+ +M  +G  
Sbjct: 403 ALIDMYAKCGRVNIARILF-NSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIV 461

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           P+  T + VLSAC  +GL++EG E + S+   Y ++P  E    +VD+LGRAG+LD A  
Sbjct: 462 PNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWA 521

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
           FI+ MP++P  S++GA++ A  +H N E+ + + + + +L P+    +V L+N+YA++  
Sbjct: 522 FIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASM 581

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRG 536
           W  VA +RT M+  GL+K+PG S I +  + H F      H  +  IY  L  LI  ++ 
Sbjct: 582 WKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKA 641

Query: 537 AAASP 541
               P
Sbjct: 642 VGYVP 646



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 171/364 (46%), Gaps = 38/364 (10%)

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           AL  F  M  +   P   T  ++ KL     DL  G  +H      G   + + A +L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MY KC + ++                                  +RRVFD+M  R+  AW
Sbjct: 103 MYAKCRRPAD----------------------------------ARRVFDRMPVRDRVAW 128

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            A++ GY +NG    A+ + + MQ ++   P+ ++LVSVLP C++   L+  ++ H FAI
Sbjct: 129 NALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAI 188

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           R  L   V++  A++D Y KCG +  AR VF D    K++++W++++ GY  +G   EA+
Sbjct: 189 RSGLEELVNVATAILDAYCKCGDIRAARVVF-DWMPTKNSVSWNAMIDGYAQNGDSREAL 247

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
            L+N+MV  G     ++++  L ACG  G ++EG+ ++  ++    +     +   ++ M
Sbjct: 248 ALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRI-GLDSNVSVMNALITM 306

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
             +  ++D A      +      S W A++     +G SE   +   + +QLE   P ++
Sbjct: 307 YSKCKRVDLASHVFDELDRRTQVS-WNAMILGCAQNGCSE-DAVRLFTRMQLENVKPDSF 364

Query: 465 VSLS 468
             +S
Sbjct: 365 TLVS 368



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 7/243 (2%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           + T  +V   LQ       L    + H  ++ +G  SN  V   LIT Y+ C +   +  
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ +  +    +N++I G  +N    +A+ LF+ M   NV PD FTL ++     +I D
Sbjct: 319 VFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISD 378

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
                 IHG SI++    DV +  +L+ MY KCG+ +    LF+   +R+V +WN  I G
Sbjct: 379 PLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHG 438

Query: 197 HASSGDFSLVVRSRRVFDQMKR----RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
           + S G     V    +F++MK      N   + ++++     G +DE    F  M+    
Sbjct: 439 YGSHGFGKAAV---ELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYG 495

Query: 253 IEP 255
           +EP
Sbjct: 496 LEP 498


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 167/530 (31%), Positives = 281/530 (53%), Gaps = 68/530 (12%)

Query: 33  HRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV------ 86
           HR+L+L ++ H+   +   +   F+S +L+  YA CG    +Q++F+ + H+D+      
Sbjct: 100 HRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTM 159

Query: 87  -------------------------YLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPD 120
                                    + +N+ I+GYV ++   EALELF  M  +   S +
Sbjct: 160 IVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSN 219

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
            FTL++    S  I  L +G  IHG  I+    +D ++ ++L+ +Y KCG   E      
Sbjct: 220 KFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDE------ 273

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                                       +R +FDQMK R+V +WT MI+   ++G  +E 
Sbjct: 274 ----------------------------ARGIFDQMKDRDVVSWTTMIHRCFEDGRREEG 305

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
            +LF ++ ++  + PN+ +   VL  C+       GK++HG+ +    +      +AL+ 
Sbjct: 306 FLLFRDL-MQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVH 364

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MYSKCG+   ARRVF +     D ++W+S++ GY  +G+  EA+  +  ++  G+KPD +
Sbjct: 365 MYSKCGNTRVARRVF-NEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQV 423

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T VGVLSAC  +GL+++GLE ++S+   + +  T +  ACV+D+L R+G+   A + I  
Sbjct: 424 TYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDN 483

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           MPV+P   +W +L+    +HGN E+   A K+L ++EPENP+ Y++L+N+YA++  W  V
Sbjct: 484 MPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEV 543

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           A +R  M + G+ K PG SWI I  + H F V D +HP +  I+E L +L
Sbjct: 544 ANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGEL 593



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 108/264 (40%), Gaps = 44/264 (16%)

Query: 233 QNGDLDEAL-VLFLEMQLKDRIE--------PNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           ++   +EA+ VL  + ++K+ +E        P+     +++  C     L  G+++H   
Sbjct: 54  EDNKFEEAVDVLCQQKRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHT 113

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
                   V + N L+DMY+KCGSL  A+ +F D   ++D  +W++++ GY   G+  +A
Sbjct: 114 KASNFVPGVFISNRLLDMYAKCGSLVDAQMLF-DEMGHRDLCSWNTMIVGYAKLGRLEQA 172

Query: 344 VLLYNKM---------------VCLGSKPDIITIVGVLSACGRSG--------------- 373
             L+++M               V      + + +  V+    RS                
Sbjct: 173 RKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAA 232

Query: 374 --LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
              +  G EI+  +I T  +     + + ++D+ G+ G LD A      M      S W 
Sbjct: 233 IPCLRLGKEIHGYLIRT-ELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVS-WT 290

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQ 455
            ++      G  E   L ++ L+Q
Sbjct: 291 TMIHRCFEDGRREEGFLLFRDLMQ 314


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 169/496 (34%), Positives = 274/496 (55%), Gaps = 36/496 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
            + L +Q H   +  G  S+ +VS  LI  Y+  G   +++ +   ++ KDV  + S+I 
Sbjct: 360 EINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIA 419

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           GYV++    EALE F +M    + PD+  LA+       IK +  G  IH      G+  
Sbjct: 420 GYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSA 479

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           DV + N+L+++Y +CG+  E  +LF+ +  ++      +I+                   
Sbjct: 480 DVSIWNALVNLYARCGRSKEAFSLFEAIEHKD------KIT------------------- 514

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                    W  M++G+ Q+G  +EAL +F++M  +  ++ N  + VS +   ++L  + 
Sbjct: 515 ---------WNGMVSGFAQSGLYEEALEVFIKM-YQAGVKYNVFTFVSSISASANLADIK 564

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GKQIH   I+     +  + NALI +Y KCGS++ A+  F + S  ++ ++W++I++  
Sbjct: 565 QGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSC 623

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HG G EA+ L+++M   G KP+ +T +GVL+AC   GL+ EGL  + S+ + + I P 
Sbjct: 624 SQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPR 683

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            +  ACVVD+LGRAGQLDRA  F++ MPV  +  +W  L+SA  +H N E+ +LA K L+
Sbjct: 684 PDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLL 743

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEP + ++YV LSN YA + +W     +R MMKDRG++K PG SWI +    H F V D
Sbjct: 744 ELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGD 803

Query: 515 KAHPCSVSIYEMLDDL 530
           + HP +  IY+ L DL
Sbjct: 804 RLHPLAHQIYKYLADL 819



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 184/404 (45%), Gaps = 42/404 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+Q+   G  S   V   LI  Y   G  + ++ VF+ + + D   +N+LI+ + +    
Sbjct: 166 HAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNG 225

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
             ALE+F  M  S  +PD  T+A++      I DLN G  +H   +K G   D I+  SL
Sbjct: 226 ESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSL 285

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + +YVKCG   E L +F                    SGD               R NV 
Sbjct: 286 LDLYVKCGVIVEALEIF-------------------KSGD---------------RTNVV 311

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W  M+  Y Q  DL ++  LF +M +   + PN+ +   +L TC+    ++ G+QIH  
Sbjct: 312 LWNLMLVAYGQISDLAKSFDLFCQM-VAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLL 370

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
           +I+     D+ +   LIDMYSK G LD ARR+ E     KD ++W+S+++GY  H    E
Sbjct: 371 SIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLE-AKDVVSWTSMIAGYVQHEFCKE 429

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV-INTYRIKPTTEICACV 401
           A+  +  M   G  PD I +   +SAC     + +G +I++ V ++ Y       I   +
Sbjct: 430 ALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGY--SADVSIWNAL 487

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSE 444
           V++  R G+   A    +   +E    I W  +VS     G  E
Sbjct: 488 VNLYARCGRSKEAFSLFEA--IEHKDKITWNGMVSGFAQSGLYE 529



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 195/420 (46%), Gaps = 40/420 (9%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H++ ++ G   +      LI  YA  G   +++ VF  +  +D   + ++++GY +N   
Sbjct: 65  HAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLG 124

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EA+ L+  M+ S V P  + L+++     +      G L+H    K G   + ++ N+L
Sbjct: 125 EEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNAL 184

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           +++Y++ G  S    +F EMP  +  ++N  IS HA                        
Sbjct: 185 IALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHA------------------------ 220

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
                     Q G+ + AL +F EM+L     P+ V++ S+L  C+S+  L+ GKQ+H +
Sbjct: 221 ----------QCGNGESALEIFEEMRLSGWT-PDCVTIASLLAACASIGDLNKGKQLHSY 269

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            ++  ++ D  +  +L+D+Y KCG +  A  +F+ S    + + W+ ++  YG      +
Sbjct: 270 LLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK-SGDRTNVVLWNLMLVAYGQISDLAK 328

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           +  L+ +MV  G +P+  T   +L  C  +G IN G +I+   I T   +    +   ++
Sbjct: 329 SFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKT-GFESDMYVSGVLI 387

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG--NSEMQDLAYKSLIQLEPEN 460
           DM  + G LD+A   ++ +  +   S W ++++  V H      ++      L  + P+N
Sbjct: 388 DMYSKYGWLDKARRILEVLEAKDVVS-WTSMIAGYVQHEFCKEALETFKDMQLFGIWPDN 446



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 148/311 (47%), Gaps = 48/311 (15%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           ++++  +Q HS++   G+ ++  +   L+  YA CG+  ++  +F +I+HKD   +N ++
Sbjct: 460 KAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMV 519

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +G+ ++  + EALE+F  MY + V  + FT  +    S  + D+  G  IH   IK G  
Sbjct: 520 SGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCT 579

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +  +AN+L+S+Y KCG   +    F EM +RN  SWN  I+  +  G     + +  +F
Sbjct: 580 SETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHG---WGLEALDLF 636

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL--- 270
           DQMK                                ++ ++PN V+ + VL  CS +   
Sbjct: 637 DQMK--------------------------------QEGLKPNDVTFIGVLAACSHVGLV 664

Query: 271 -IGLSGGKQI---HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
             GL   K +   HG   R     D   C  ++D+  + G LD AR+  E+   + +A+ 
Sbjct: 665 EEGLGYFKSMSSEHGIHPRP----DHYAC--VVDILGRAGQLDRARKFVEEMPVSANAMV 718

Query: 327 WSSIVSGYGLH 337
           W +++S   +H
Sbjct: 719 WRTLLSACRVH 729



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 104/230 (45%), Gaps = 5/230 (2%)

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC-SSLIGLS 274
           M RR   +    + G++ + D ++ L LF   +++       V     L  C  S+    
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLF-AAKVRQCRGLGSVDFACALRECRGSVKHWP 59

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
               IH  AI   L  D    N LID+Y+K G +  ARRVFE  S  +D ++W +++SGY
Sbjct: 60  LVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLS-ARDNVSWVAMLSGY 118

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             +G G EAV LY++M C G  P    +  VLSAC ++ L  +G  ++  V        T
Sbjct: 119 ARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSET 178

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
             +   ++ +  R G L  A      MP     + +  L+S     GN E
Sbjct: 179 V-VGNALIALYLRFGSLSLAERVFSEMPYCDRVT-FNTLISRHAQCGNGE 226



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 20/191 (10%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            Y   T    +  SA    +K  KQ H+ ++  G  S   V+  LI+ Y  CG    +++
Sbjct: 544 KYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKM 603

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT----LATISKLS- 131
            F  +  ++   +N++I    ++    EAL+LF  M    + P+D T    LA  S +  
Sbjct: 604 QFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGL 663

Query: 132 -----GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QR 185
                G  K ++    IH        VVD++          + G+        +EMP   
Sbjct: 664 VEEGLGYFKSMSSEHGIHPRPDHYACVVDIL---------GRAGQLDRARKFVEEMPVSA 714

Query: 186 NVGSWNVRISG 196
           N   W   +S 
Sbjct: 715 NAMVWRTLLSA 725


>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 471

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 167/465 (35%), Positives = 253/465 (54%), Gaps = 45/465 (9%)

Query: 67  LCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126
           LC   + ++ VF  +  K+V ++ S+INGY+ N       +L S   Y ++SP+      
Sbjct: 38  LCSMVSANK-VFCEMVEKNVVIWTSMINGYLLNK------DLVSARRYFDLSPER----- 85

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
                                       D++L N++++ Y++ G   E  +LFD+MP R+
Sbjct: 86  ----------------------------DIVLWNTMVAGYIEMGNMMEARSLFDQMPCRD 117

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           V SWN  + G+A+ GD        RVFD+M  RNV++W  +I GY QNG + E L  F  
Sbjct: 118 VMSWNTVLEGYANIGDME---ACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKR 174

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH-DVSLCNALIDMYSKC 305
           M  +  + PN  +L  VL  C+ L     GK++H +      N  DV++ NALIDMY KC
Sbjct: 175 MVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKC 234

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           G+++ A  VF+     +D I+W+++++G   HG G EA+ L+++M   G  PD +T VGV
Sbjct: 235 GAIEIAMEVFKGIK-RRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFVGV 293

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L AC   GL+ +GL  +NS+   + I P  E C CVVD+L RAG L +A++FI  MPV+ 
Sbjct: 294 LCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPVKA 353

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485
              IW  L+ AS ++   +  +LA K LI+LEP NP+N+V LSN+Y  + R+D  A L+ 
Sbjct: 354 DAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIYGDAGRFDDAARLKV 413

Query: 486 MMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            M+D G KK  G SWI        F  + + HP +  +  +L +L
Sbjct: 414 AMRDTGFKKEAGISWIETDDGLVKFYSSGEKHPRTEELQRILGEL 458



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 127/300 (42%), Gaps = 46/300 (15%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSP 119
           ++  YA  G     + VF+ +  ++V+ +N LI GY +N   +E L  F  M    +V P
Sbjct: 124 VLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFP 183

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-VVDVILANSLMSMYVKCGKFSECLNL 178
           +D TL  +     ++   + G  +H     +G+  VDV + N+L+ MY KCG     + +
Sbjct: 184 NDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEV 243

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F  + +R++ SWN                                   MING   +G   
Sbjct: 244 FKGIKRRDLISWN----------------------------------TMINGLAAHGHGT 269

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG-----KQIHGFAIRKELNHDVS 293
           EAL LF EM+    I P+KV+ V VL  C  +  +  G          F+I  ++ H   
Sbjct: 270 EALDLFHEMK-NCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEH--- 325

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
            C  ++D+ S+ G L  A           DA+ W++++    ++ K     L   +++ L
Sbjct: 326 -CGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKL 384



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 121/254 (47%), Gaps = 15/254 (5%)

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           G    +V + +VF +M  +NV  WT+MINGY+ N DL  A   F        + P +  +
Sbjct: 36  GTLCSMVSANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYF-------DLSPER-DI 87

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELN-HDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           V      +  I +  G  +   ++  ++   DV   N +++ Y+  G ++   RVF D  
Sbjct: 88  VLWNTMVAGYIEM--GNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVF-DEM 144

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-PDIITIVGVLSACGRSGLINEG 378
             ++  +W+ ++ GY  +G+  E +  + +MV  GS  P+  T+  VLSAC + G  + G
Sbjct: 145 LERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFG 204

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
             ++    N    K    +   ++DM G+ G ++ A++  K +      S W  +++   
Sbjct: 205 KRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLIS-WNTMINGLA 263

Query: 439 MHGN-SEMQDLAYK 451
            HG+ +E  DL ++
Sbjct: 264 AHGHGTEALDLFHE 277



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVFN 79
           AT+   L   A   +    K+ H    +LG+   +  V   LI  Y  CG    +  VF 
Sbjct: 186 ATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFK 245

Query: 80  SIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATI 127
            I+ +D+  +N++ING +  HGH  EAL+LF  M    +SPD  T   +
Sbjct: 246 GIKRRDLISWNTMING-LAAHGHGTEALDLFHEMKNCGISPDKVTFVGV 293


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 174/538 (32%), Positives = 279/538 (51%), Gaps = 69/538 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L+  A  ++ K  +Q H  +L LG   + +V T LI+ Y   G+   +  VF+
Sbjct: 91  SYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFD 150

Query: 80  SIQHKDVYLY-------------------------------NSLINGYVKNHGHNEALEL 108
              H+DV  Y                               N++I+GY +   + EALEL
Sbjct: 151 ESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALEL 210

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           F +M  +NV PD+ T+ T+     +   + +G  +H      GF  ++ + N+L+ +Y K
Sbjct: 211 FKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSK 270

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG+      LF+ +P ++V S                                  W  +I
Sbjct: 271 CGELETACGLFEGLPYKDVIS----------------------------------WNTLI 296

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--K 286
            GY       EAL+LF EM L+    PN V+++S+LP C+ L  +  G+ IH +  +  K
Sbjct: 297 GGYTHMNLYKEALLLFQEM-LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 355

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
            + +  SL  +LIDMY+KCG ++ A +VF +S  +K   +W++++ G+ +HG+   +  +
Sbjct: 356 GVANASSLRTSLIDMYAKCGDIEAAHQVF-NSILHKSLSSWNAMIFGFAMHGRADASFDI 414

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           +++M   G +PD IT VG+LSAC  SG+++ G  I+ S+   Y++ P  E   C++D+LG
Sbjct: 415 FSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLG 474

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466
            +G    A + I TM +EP   IW +L+ A  MHGN E+ +   ++LI++EPENP +YV 
Sbjct: 475 HSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVL 534

Query: 467 LSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           LSN+YA++ RW+ VA  R ++ D+G+KK PGCS I I    H F + DK HP +  IY
Sbjct: 535 LSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 592



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 224/414 (54%), Gaps = 12/414 (2%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALC----GQPTQSQLVFNSIQHKDVYLYNS 91
           L+  +  H+Q++  G  +  +  +KLI    L     G P     VF +IQ  ++ ++N+
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAIS-VFETIQEPNLLIWNT 61

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +  G+  +     AL+L+  M    + P+ +T   + K   + K    G  IHG  +K+G
Sbjct: 62  MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLG 121

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
             +D+ +  SL+SMYV+ G+  +   +FDE P R+V S+   I G+AS G    +  +++
Sbjct: 122 CDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRG---YIENAQK 178

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +FD++  ++V +W AMI+GY + G+  EAL LF +M +K  + P++ ++V+V+  C+   
Sbjct: 179 MFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM-MKTNVRPDESTMVTVVSACAQSG 237

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            +  G+Q+H +        ++ + NALID+YSKCG L+ A  +FE   + KD I+W++++
Sbjct: 238 SIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPY-KDVISWNTLI 296

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR- 390
            GY       EA+LL+ +M+  G  P+ +T++ +L AC   G I+ G  I+  +    + 
Sbjct: 297 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 356

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +   + +   ++DM  + G ++ A     ++ +  S S W A++    MHG ++
Sbjct: 357 VANASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRAD 409


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 190/586 (32%), Positives = 308/586 (52%), Gaps = 79/586 (13%)

Query: 8   NTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
           NT+ LV +           LQ        KL  + H+ IL    + + +V+  L+  +  
Sbjct: 111 NTYTLVAA-----------LQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVR 159

Query: 68  CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            G+ + +  +F+ +  KD   +NS+I G+ +N  +NEAL+ F  +  +N+ PD+ +L +I
Sbjct: 160 FGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISI 219

Query: 128 SKLSGEIKDLNVGMLIHGLSIK-------------------------IGFVVDVILANSL 162
              SG +  L  G  IH  ++K                          G V D ++   L
Sbjct: 220 LAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDL 279

Query: 163 MSM------YVKCGKFSECLNLFDEMPQRN-------VGSWNVRISG-----HASS---- 200
           +S       Y +    +E L L  ++  +        +GS  +  SG     HA      
Sbjct: 280 ISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGY 339

Query: 201 -------------------GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
                               D   +  + R+F+ +K ++V +WT+MI+ YV NG  +EAL
Sbjct: 340 TLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEAL 399

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            +F  M+ +  +EP+ ++LVS+L   +SL  L+ GK+IHGF  RK    + S  N+L+DM
Sbjct: 400 GVFYLMK-ETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDM 458

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y+ CGSL+ A +VF   + +K  + W+++++ YG+HG+G  AV L++ M      PD IT
Sbjct: 459 YACCGSLENAYKVF-ICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHIT 517

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
            + +L AC  SGLINEG  +  ++   Y+++P  E  AC+VD+LGRA  L+ A  F+K+M
Sbjct: 518 FLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSM 577

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
            +EP+  +W A + A  +H N ++ ++A + L+ L+P++P +YV +SN++A+S RW  V 
Sbjct: 578 QIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVE 637

Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
           E+R  MK  GLKK+PGCSWI +  K H F V DK+HP S  IY+ L
Sbjct: 638 EVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKL 683



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 199/414 (48%), Gaps = 44/414 (10%)

Query: 29  VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK-DVY 87
           V   HR  ++    H  I+  G+ S  FV+  L++ YA C     ++ +F+ +  + DV 
Sbjct: 23  VEDIHRGAEI----HGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVV 78

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            +NS+I+ Y  N    EAL LF  M  + V  + +TL    +   +     +GM IH   
Sbjct: 79  SWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAI 138

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
           +K   V+DV +AN+L++M+V+ GK S    +FDE+ +++  +WN                
Sbjct: 139 LKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWN---------------- 182

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
                             +MI G+ QNG  +EAL  F  +Q    ++P++VSL+S+L   
Sbjct: 183 ------------------SMIAGFTQNGLYNEALQFFCGLQ-DANLKPDEVSLISILAAS 223

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
             L  L  GK+IH +A++  L+ ++ + N LIDMYSKC  +  A  VF D   NKD I+W
Sbjct: 224 GRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVF-DKMINKDLISW 282

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +++++ Y  +    EA+ L  K+   G   D + I   L AC     ++   E++   + 
Sbjct: 283 TTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLK 342

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             R      +   ++D+    G ++ A    +++  +   S W +++S  V +G
Sbjct: 343 --RGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVS-WTSMISCYVHNG 393



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 140/291 (48%), Gaps = 36/291 (12%)

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           V  D FT   + K  G ++D++ G  IHGL IK G+   V +ANSL+SMY KC       
Sbjct: 6   VPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGAR 65

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
            LFD M +RN                                 +V +W ++I+ Y  NG 
Sbjct: 66  KLFDRMNERN---------------------------------DVVSWNSIISAYSLNGQ 92

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
             EAL LF EMQ K  +  N  +LV+ L  C        G +IH   ++     DV + N
Sbjct: 93  CMEALGLFREMQ-KAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVAN 151

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           AL+ M+ + G +  A R+F++    KD ITW+S+++G+  +G  +EA+  +  +     K
Sbjct: 152 ALVAMHVRFGKMSYAARIFDELD-EKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLK 210

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
           PD ++++ +L+A GR G +  G EI+   +  + +     I   ++DM  +
Sbjct: 211 PDEVSLISILAASGRLGYLLNGKEIHAYAMKNW-LDSNLRIGNTLIDMYSK 260



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 8/216 (3%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL  C  +  +  G +IHG  I+   +  V + N+L+ MY+KC  +  AR++F+  +   
Sbjct: 16  VLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERN 75

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D ++W+SI+S Y L+G+  EA+ L+ +M   G   +  T+V  L AC  S     G+EI+
Sbjct: 76  DVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIH 135

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG- 441
            +++ + ++     +   +V M  R G++  A      +  E     W ++++    +G 
Sbjct: 136 AAILKSNQVLDVY-VANALVAMHVRFGKMSYAARIFDELD-EKDNITWNSMIAGFTQNGL 193

Query: 442 -NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
            N  +Q         L+P+     VSL ++ A+S R
Sbjct: 194 YNEALQFFCGLQDANLKPDE----VSLISILAASGR 225


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 174/508 (34%), Positives = 283/508 (55%), Gaps = 38/508 (7%)

Query: 36  LKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           L+  K+ H+  L     I N FV + L+  Y  CGQ    +LVF+S+  + + L+N++I 
Sbjct: 232 LRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIA 291

Query: 95  GYVKNHGHNEALELFSNM-----YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           GY ++    +AL LF  M      YSN +    T+++I       + ++    IHG  IK
Sbjct: 292 GYAQSEHDEKALMLFIEMEAAAGLYSNAT----TMSSIVPAYVRCEGISRKEGIHGYVIK 347

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            G   +  L N+L+ MY + G       +FD M  R++ SWN  I+ +   G  S  +  
Sbjct: 348 RGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLL 407

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDL-DEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
                +++ ++ Y           +GD  DE  V F         +PN ++L++VLP C+
Sbjct: 408 LHEMQRIEEKSTY-----------DGDYNDEKQVPF---------KPNSITLMTVLPGCA 447

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           SL  L+ GK+IH +AIR  L   V++ +AL+DMY+KCG L+ ARRVF+     ++ ITW+
Sbjct: 448 SLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPI-RNVITWN 506

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGS-----KPDIITIVGVLSACGRSGLINEGLEIYN 383
            I+  YG+HGKG E++ L+  MV  G+     KP  +T + + ++C  SG+++EGL +++
Sbjct: 507 VIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFH 566

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE-PSPSIWGALVSASVMHGN 442
            + N + I+P  +  AC+VD++GRAG+++ A   + TMP        W +L+ A  ++ N
Sbjct: 567 KMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHN 626

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
            E+ ++A ++L+QL+P+  S+YV LSN+Y+S+  WD    LR  MK  G+KK PGCSWI 
Sbjct: 627 IEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIE 686

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLDDL 530
              + H F   D +HP S  +++ L+ L
Sbjct: 687 YGDEVHKFLAGDLSHPQSEKLHDFLETL 714



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 196/441 (44%), Gaps = 54/441 (12%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGH--ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           L+  A  + L L KQ H+ +   G+   S+  +   L+  Y  CG    +  VF+ I  +
Sbjct: 17  LKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITER 76

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD---LNVGM 141
           D   +NS+I+   +      A++ F  M      P  FTL +++     ++    L +G 
Sbjct: 77  DQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGK 136

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IHG   + G        N+LM+MY K G+  +  +L      R++ +WN          
Sbjct: 137 QIHGCCFRKGH-WRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWN---------- 185

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   +MI+ + QN    EAL +FL + + + ++P+ V+  
Sbjct: 186 ------------------------SMISSFSQNERFMEAL-MFLRLMVLEGVKPDGVTFA 220

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           SVLP CS L  L  GK+IH +A+R  ++  +  + +AL+DMY  CG ++  R VF DS  
Sbjct: 221 SVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVF-DSVL 279

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLINEGL 379
           ++    W+++++GY       +A++L+ +M    G   +  T+  ++ A  R   I+   
Sbjct: 280 DRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKE 339

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            I+  VI    ++    +   ++DM  R G +  +     +M      S W  ++++ V+
Sbjct: 340 GIHGYVIKR-GLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVS-WNTIITSYVI 397

Query: 440 HGNS--------EMQDLAYKS 452
            G S        EMQ +  KS
Sbjct: 398 CGRSSDALLLLHEMQRIEEKS 418



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 177/380 (46%), Gaps = 54/380 (14%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF--VVDVILANSLMSMYVKC 169
           M  S  SPD+F    + K    I++L +G  IH    K G+     V + N+L++MY KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           G   +                                  + +VFD++  R+  +W ++I+
Sbjct: 61  GGLGD----------------------------------AYKVFDRITERDQVSWNSIIS 86

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI---GLSGGKQIHGFAIRK 286
              +  + + A+  F  + L +  EP+  +LVS+   CS+L    GL  GKQIHG   RK
Sbjct: 87  ALCRFEEWEVAIKAF-RLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRK 145

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRV---FEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
                 S  NAL+ MY+K G LD A+ +   FED    +D +TW+S++S +  + +  EA
Sbjct: 146 GHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFED----RDLVTWNSMISSFSQNERFMEA 200

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           ++    MV  G KPD +T   VL AC    L+  G EI+   + T  +   + + + +VD
Sbjct: 201 LMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVD 260

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP-- 461
           M    GQ++       ++ ++    +W A+++    +  SE  + A    I++E      
Sbjct: 261 MYCNCGQVESGRLVFDSV-LDRKIGLWNAMIAG---YAQSEHDEKALMLFIEMEAAAGLY 316

Query: 462 SNYVSLSNLYASSRRWDAVA 481
           SN  ++S++  +  R + ++
Sbjct: 317 SNATTMSSIVPAYVRCEGIS 336



 Score = 42.0 bits (97), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 8/180 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A+  +L   K+ H+  +     S   V + L+  YA CG    ++ VF+
Sbjct: 436 SITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFD 495

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-----NVSPDDFTLATISKLSGEI 134
            +  ++V  +N +I  Y  +    E+LELF +M         V P + T   +       
Sbjct: 496 QMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHS 555

Query: 135 KDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ--RNVGSWN 191
             ++ G+ L H +  + G          ++ +  + GK  E   L + MP     VG+W+
Sbjct: 556 GMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWS 615


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 268/514 (52%), Gaps = 36/514 (7%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            Y S T    L+  A   +L   ++ H+Q +  G   + FV+  L T Y  CG+      
Sbjct: 214 EYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLT 273

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F  +  +DV  + ++I   V+      A++ F  M  S+VSP+++T A +      +  
Sbjct: 274 LFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLAR 333

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           +  G  +H L + +G    + + NS+M+MY KCG+ +                       
Sbjct: 334 IEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTS---------------------- 371

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                       S  +F +M RR++ +W+ +I GY Q G + EA  L   M+++   +P 
Sbjct: 372 ------------SSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGP-KPT 418

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + +L SVL  C ++  L  GKQ+H + +   L H   + +ALI+MY KCGS++ A R+F 
Sbjct: 419 EFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIF- 477

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D++ N D ++W+++++GY  HG   E + L+ K+  +G +PD +T +GVLSAC  +GL++
Sbjct: 478 DAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVD 537

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G   +N++   Y+I P+ E   C++D+L RAG+L  A   I+ MP      +W  L+ A
Sbjct: 538 LGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRA 597

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +HG+ E      + ++QLEP     +++L+N+YAS  +W   A++R +MK +G+ K P
Sbjct: 598 CRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEP 657

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           G SWI +      F   D++HP    IY MLD L
Sbjct: 658 GWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLL 691



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 215/473 (45%), Gaps = 74/473 (15%)

Query: 58  STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY-SN 116
           S K +      G    ++ +F+ +  KD   + +LI+GYV  +  +EAL LF NM   S 
Sbjct: 52  SNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESG 111

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           +  D F L+   K  G   D+N G L+HG ++K G V  V + ++L+ MY K GK  E  
Sbjct: 112 LRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGR 171

Query: 177 NLFDEMPQRNVGSWNVRISGHASSG-------DFSLVVRSRRVFDQMK------------ 217
            +F EMP RNV SW   I+G   +G        FS + RSR  +D               
Sbjct: 172 RVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSG 231

Query: 218 ----RRNVYAWTAMING--------------YVQNGDLDEALVLFLEMQLKD-------- 251
                R ++A  AM  G              Y + G L+  L LF +M ++D        
Sbjct: 232 ALNYGREIHA-QAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTII 290

Query: 252 ----------------------RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
                                  + PN+ +  +V+  C++L  +  G+Q+H   +   L 
Sbjct: 291 TTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLA 350

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
             +S+ N+++ MY+KCG L  +  +F + +  +D ++WS+I++GY   G   EA  L + 
Sbjct: 351 ASLSVENSIMTMYAKCGQLTSSSVIFHEMT-RRDIVSWSTIIAGYXQGGHVSEAFELLSW 409

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M   G KP    +  VLSACG   ++  G +++  V++   ++ T  + + +++M  + G
Sbjct: 410 MRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSI-GLEHTAMVLSALINMYCKCG 468

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYK-SLIQLEPEN 460
            ++ A         +   S W A+++    HG S E+ DL  K   + L P++
Sbjct: 469 SIEEASRIFDAAENDDIVS-WTAMINGYAEHGYSREVIDLFEKIPRVGLRPDS 520



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 145/328 (44%), Gaps = 41/328 (12%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V+   YT A V   +   A    ++  +Q H+ IL LG  ++  V   ++T YA CGQ T
Sbjct: 314 VSPNEYTFAAV---ISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLT 370

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            S ++F+ +  +D+  ++++I GY +    +EA EL S M      P +F LA++    G
Sbjct: 371 SSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACG 430

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +  L  G  +H   + IG     ++ ++L++MY KCG   E   +FD     ++ SW  
Sbjct: 431 NMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTA 490

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            I+G+A  G       SR V D                               E   +  
Sbjct: 491 MINGYAEHG------YSREVID-----------------------------LFEKIPRVG 515

Query: 253 IEPNKVSLVSVLPTCS--SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           + P+ V+ + VL  CS   L+ L G    +  + + +++        +ID+  + G L  
Sbjct: 516 LRPDSVTFIGVLSACSHAGLVDL-GFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSD 574

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           A  + E   F++D + WS+++    +HG
Sbjct: 575 AEHMIEAMPFHRDDVVWSTLLRACRVHG 602



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 137/260 (52%), Gaps = 12/260 (4%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD--RIEPNKVSLVSVLPT 266
           +RR+FD+M +++  +WT +I+GYV   D  EAL+LF  M+++   RI+P  +SL      
Sbjct: 68  ARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAH--KA 125

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C     ++ G+ +HG+A++  L + V + +AL+DMY+K G +   RRVF +    ++ ++
Sbjct: 126 CGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPM-RNVVS 184

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++I++G    G   EA++ +++M     + D  T    L AC  SG +N G EI+   +
Sbjct: 185 WTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAM 244

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
                  ++ +   +  M  + G+L+  L   + M +    S W  +++  V  G  E  
Sbjct: 245 KK-GFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVS-WTTIITTLVQMGQEE-- 300

Query: 447 DLAYKSLIQLEPEN--PSNY 464
             A ++ I++   +  P+ Y
Sbjct: 301 -CAVQAFIRMRESDVSPNEY 319


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 184/539 (34%), Positives = 296/539 (54%), Gaps = 18/539 (3%)

Query: 14  TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS---NPFVSTKLITAYALCGQ 70
           T+     A  +  L+  A + SL   K+ H+ IL+ G  S   N F+   L   YA CG 
Sbjct: 9   TTLQSLPARFRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGV 68

Query: 71  PTQSQLVFNSI--QHKDVYLYNSLINGYVKNHGH--NEALELFSNMYYSNVSPDDFTLAT 126
            + ++ +F  I   HKDV  + +L+   V+ HG   +E    F  M    V  DD  + +
Sbjct: 69  TSSARHLFYQIPRSHKDVTDWTTLLTSLVQ-HGTKPSEGFFFFKEMRKEGVVLDDVAMIS 127

Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
           +  L   ++DL +G    G  +K+G  + V + N++M+MYVKCG   E   +F EM +RN
Sbjct: 128 VFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERN 187

Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246
           V SW+  + G      +  V   R VFD+M  RN   WT MI GYV NG   E  +L  E
Sbjct: 188 VVSWSTLLEGVVK---WEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDE 244

Query: 247 MQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR---KELNHDVSLCNALIDMYS 303
           M L+ R+  N V+L S+L  C+    +  G+ +H +A++   +E++  + +  AL+DMY+
Sbjct: 245 MVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMH--IMVGTALVDMYA 302

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           KCG +D A +VF+     ++ + W++++ G  +HG+G   + ++ KM+   +KPD +T +
Sbjct: 303 KCGPIDMAFKVFKYLP-KRNVVAWNAMLGGLAMHGRGKFVLDIFPKMI-EEAKPDDLTFM 360

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            VLSAC  SGL+++G   + S+ + Y   P  E  AC+VD+LGRAG L+ A+  IK MP+
Sbjct: 361 AVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPM 420

Query: 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483
            P+  + G+L+ +   HG  ++ +   + LIQ++  N   +V LSN+Y    + D    L
Sbjct: 421 CPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSL 480

Query: 484 RTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           R ++K +G++K PG S I + G  H FS  DK+HP +  IY  L+++I  +R A   P+
Sbjct: 481 RQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPN 539


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 167/489 (34%), Positives = 267/489 (54%), Gaps = 38/489 (7%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           FV   +I  Y   G   + + VF+ +  +D+  +NS+I+G+ +      A+E+F  M  S
Sbjct: 206 FVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDS 265

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-VVDVILANSLMSMYVKCGKFSE 174
            VSPD  TL +++    +  D+  G  +H   ++ G+ V D+I  N+++ MY K  K   
Sbjct: 266 GVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEA 325

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
              +FD MP R+  SWN  I+G                                  Y+QN
Sbjct: 326 AQRMFDSMPVRDAVSWNTLITG----------------------------------YMQN 351

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G   EA+ ++  MQ  + ++P + + VSVLP  S L  L  G ++H  +I+  LN DV +
Sbjct: 352 GLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYV 411

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
              +ID+Y+KCG LD A  +FE +   +    W++++SG G+HG G +A+ L+++M   G
Sbjct: 412 GTCVIDLYAKCGKLDEAMLLFEQTP-RRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEG 470

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
             PD +T V +L+AC  +GL+++G   +N +   Y IKP  +  AC+VDM GRAGQLD A
Sbjct: 471 ISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDA 530

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            DFI+ MP++P  +IWGAL+ A  +HGN EM  +A ++L +L+P+N   YV +SN+YA  
Sbjct: 531 FDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKV 590

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA--HPCSVSIYEMLDDLIL 532
            +WD V E+R++++ + L+K+PG S I +    + F   ++   HP    I   L DL+ 
Sbjct: 591 GKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLA 650

Query: 533 IMRGAAASP 541
            +R     P
Sbjct: 651 KIRSLGYVP 659



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 216/437 (49%), Gaps = 42/437 (9%)

Query: 41  QSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           Q H+  L LG +  + F S  L+ AY   G+   +   F+ ++H+DV  +N++++G  +N
Sbjct: 89  QLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRN 148

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               EA+ LF  M    V+ D  T++++  +   + D  + + +H  ++K G   ++ + 
Sbjct: 149 ARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVC 208

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+++ +Y K G   E                                   R+VFD M  R
Sbjct: 209 NAMIDVYGKLGMLEEV----------------------------------RKVFDGMSSR 234

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           ++  W ++I+G+ Q G +  A+ +F  M+    + P+ ++L+S+    +    + GG+ +
Sbjct: 235 DLVTWNSIISGHEQGGQVASAVEMFCGMR-DSGVSPDVLTLLSLASAIAQCGDICGGRSV 293

Query: 280 HGFAIRKELN-HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           H + +R+  +  D+   NA++DMY+K   ++ A+R+F DS   +DA++W+++++GY  +G
Sbjct: 294 HCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMF-DSMPVRDAVSWNTLITGYMQNG 352

Query: 339 KGHEAVLLYNKMVC-LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
              EA+ +Y+ M    G KP   T V VL A    G + +G  ++   I T  +     +
Sbjct: 353 LASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKT-GLNLDVYV 411

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             CV+D+  + G+LD A+   +  P   S   W A++S   +HG+   + L+  S +Q E
Sbjct: 412 GTCVIDLYAKCGKLDEAMLLFEQTP-RRSTGPWNAVISGVGVHGHGA-KALSLFSQMQQE 469

Query: 458 PENPSNYVSLSNLYASS 474
             +P +   +S L A S
Sbjct: 470 GISPDHVTFVSLLAACS 486



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 16/213 (7%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+   + H+  +  G   + +V T +I  YA CG+  ++ L+F     +    +N++I+
Sbjct: 389 ALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVIS 448

Query: 95  GYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           G V  HGH  +AL LFS M    +SPD  T  ++         ++ G     + ++  + 
Sbjct: 449 G-VGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNM-MQTAYG 506

Query: 154 VDVILAN--SLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNV-----RISGHASSGDFSL 205
           +  I  +   ++ M+ + G+  +  +    MP + +   W       RI G+   G    
Sbjct: 507 IKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGK--- 563

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
            V S+ +F ++  +NV  +  M N Y + G  D
Sbjct: 564 -VASQNLF-ELDPKNVGYYVLMSNMYAKVGKWD 594


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 181/571 (31%), Positives = 295/571 (51%), Gaps = 74/571 (12%)

Query: 28  QVSATHR--SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           ++S  H+  +L   KQ H+QIL      + FV  KLI+A++LC Q   +   FN +Q+ +
Sbjct: 23  KLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPN 82

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           V+LYN++I  +  N   ++A   F  M       D+FT   + K+      L V   +H 
Sbjct: 83  VHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHA 142

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGK---------------------------------- 171
              K GF+ DV + NSL+  Y KCG                                   
Sbjct: 143 QIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGL 202

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
           + E   +FDEMP+++  SWN  + G+   G       + ++FD+M  RNV +W+ M+ GY
Sbjct: 203 YEEARKVFDEMPEKDGISWNTMLDGYVKVGKMD---DAFKLFDEMPERNVVSWSTMVLGY 259

Query: 232 VQNGDLDEALVLFLEMQLK-------------------------DRIEP-----NKVSLV 261
            + GD++ A +LF +M +K                         D++E      +  +++
Sbjct: 260 CKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVM 319

Query: 262 SVLPTC--SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           S+L  C  S L+GL  G++IH             + NAL+DMY+KCG L+ A  VF D  
Sbjct: 320 SILAACAESGLLGL--GEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIK 377

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            NKD ++W++++ G  +HG G +A+ L+ +M   G  P+ +T++GVL AC  +GLI++G+
Sbjct: 378 -NKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGI 436

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             ++++   Y + P  E   C+VD+LGR G+L+ A+  I+ MP+ P+  IWG L+ A  M
Sbjct: 437 RYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRM 496

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H   E+       L++LEP +  N+  LSN+YA++  W+ VA  R  M+  G KK  G S
Sbjct: 497 HNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGAS 556

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            I ++ + H F+V D++HP S +IY++++ L
Sbjct: 557 SIEVNNEVHEFTVFDRSHPKSDNIYQVINGL 587



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + TV   L   A    L L ++ H+ I +        +S  L+  YA CG+   +  VFN
Sbjct: 315 NGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFN 374

Query: 80  SIQHKDVYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTL 124
            I++KDV  +N+++ G +  HGH  +ALELF  M     SP+  T+
Sbjct: 375 DIKNKDVVSWNAMLQG-LAMHGHGVKALELFKRMKEEGFSPNKVTM 419


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 176/521 (33%), Positives = 270/521 (51%), Gaps = 36/521 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   +   S    +  H++++     SN  + + L+T Y  CG    +  VF 
Sbjct: 345 SFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFY 404

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           +++ +DV  + S+I G+ +N    +AL+LF  M    V  D   + ++      ++++ +
Sbjct: 405 TMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVEL 464

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G LIHG +IK G   DV +A SL+ MY K G F+E   +                     
Sbjct: 465 GHLIHGFAIKRGLESDVFVACSLVDMYSKFG-FAESAEM--------------------- 502

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                       VF  M  +N+ AW +MI+ Y  NG L E  +  L   L+     + VS
Sbjct: 503 ------------VFSSMPNKNLVAWNSMISCYSWNG-LPEMSINLLPQILQHGFYLDSVS 549

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           + +VL   SS+  L  GK +H + IR ++  D+ + NALIDMY KCG L  A+ +FE+  
Sbjct: 550 ITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMP 609

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             ++ +TW+S+++GYG HG   EAV L+ +M    + PD +T + ++++C  SG++ EGL
Sbjct: 610 -RRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGL 668

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            ++  +   Y ++P  E  A VVD+LGRAG+LD A  FI+ MP++   S+W  L+ A   
Sbjct: 669 NLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRA 728

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H N E+ +L   +L+++EP   SNYV L NLY     WD  A LR  MK RGLKKSPGCS
Sbjct: 729 HRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCS 788

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540
           WI +  +   F   D +    + IY+ L  L   M G   S
Sbjct: 789 WIEVKNRVDVFFSGDSSSTRRIEIYKTLSSLKSNMEGKGCS 829



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 208/456 (45%), Gaps = 43/456 (9%)

Query: 2   ILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
           + S A+N    + S ++T A         +    L   +Q H  ++ +    +P+V T L
Sbjct: 231 LYSLAKNENCKLVSASFTGA-----FTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSL 285

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           +T YA  G    ++ VF+ +  K+V L N++I+ ++ N    +AL L++ M       D 
Sbjct: 286 LTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDS 345

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
           FT++++      +   + G  +H   IK     +V + ++L++MY KCG   +       
Sbjct: 346 FTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTED------- 398

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
                                      +  VF  MK R+V AW +MI G+ QN    +AL
Sbjct: 399 ---------------------------ADSVFYTMKERDVVAWGSMIAGFCQNRRFKDAL 431

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            LF  M+ K+ ++ +   + SV+     L  +  G  IHGFAI++ L  DV +  +L+DM
Sbjct: 432 DLFRAME-KEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDM 490

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           YSK G  + A  VF  S  NK+ + W+S++S Y  +G    ++ L  +++  G   D ++
Sbjct: 491 YSKFGFAESAEMVF-SSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVS 549

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
           I  VL A      + +G  ++   I   +I    ++   ++DM  + G L  A    + M
Sbjct: 550 ITTVLVAVSSVAALLKGKTLHAYQIRL-QIPSDLQVENALIDMYVKCGCLKYAQLIFENM 608

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
           P   +   W ++++    HGN E     +K + + E
Sbjct: 609 P-RRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSE 643



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 182/421 (43%), Gaps = 63/421 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  A+  +L   +  H+ I+++G  S+P+++T LI  Y  CG    +  VF+ +
Sbjct: 57  TFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKM 116

Query: 82  QHK-----DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
                   D+ ++N +I+GY K     E L  F  M                    E+  
Sbjct: 117 SESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQ-------------------ELSW 157

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRIS 195
              G  IHG  I+  F  D  L  +L+ MY  C +  E  +LF ++  R N+ +WNV   
Sbjct: 158 YMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNV--- 214

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                                          MI G+V+NG  +++L L+  +   +  + 
Sbjct: 215 -------------------------------MIGGFVENGMWEKSLELY-SLAKNENCKL 242

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
              S       CS    L  G+Q+H   I+     D  +C +L+ MY+K GS++ A++VF
Sbjct: 243 VSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVF 302

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D   +K+    ++++S +  +G+ ++A+ LYNKM    +  D  TI  +LS C   G  
Sbjct: 303 -DQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSY 361

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           + G  ++  VI    ++    I + ++ M  + G  + A     TM  E     WG++++
Sbjct: 362 DFGRTVHAEVIKR-SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK-ERDVVAWGSMIA 419

Query: 436 A 436
            
Sbjct: 420 G 420



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 147/354 (41%), Gaps = 51/354 (14%)

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           NS I   V+   +++ALEL S   +S ++   FT  ++ K    + +L  G  IH   + 
Sbjct: 24  NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVT 83

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           +G   D  +A SL++MYVKCG     L +FD+M +    + ++ +               
Sbjct: 84  MGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITV--------------- 128

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
                         W  +I+GY + G  +E L  F  MQ                     
Sbjct: 129 --------------WNPVIDGYFKYGHFEEGLAQFCRMQ--------------------E 154

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L     G+QIHG+ IR     D  L  ALI MYS C     A  +F       + + W+ 
Sbjct: 155 LSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNV 214

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++ G+  +G   +++ LY+       K    +  G  +AC    +++ G +++  VI   
Sbjct: 215 MIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKM- 273

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
             +    +C  ++ M  ++G ++ A      + ++    +  A++SA + +G +
Sbjct: 274 NFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQV-LDKEVELRNAMISAFIGNGRA 326


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 173/537 (32%), Positives = 276/537 (51%), Gaps = 47/537 (8%)

Query: 2   ILSSARNTFAL--------VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS 53
           +L   RN+F +        +    YT  ++   L+       L+L +Q HSQI+      
Sbjct: 450 LLDDLRNSFRIFRQMQIEEIVPNQYTYPSI---LKTCIRLGDLELGEQIHSQIIKTSFQL 506

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N +V + LI  YA  G+   +  +      KDV  + ++I GY + +  ++AL  F  M 
Sbjct: 507 NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 566

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
              +  D+  L         ++ L  G  IH  +   GF  D+   N+L+++Y KCG   
Sbjct: 567 DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIE 626

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
           E                                  +   F+Q +  +  AW A+++G+ Q
Sbjct: 627 E----------------------------------AYLAFEQTEAGDNIAWNALVSGFQQ 652

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           +G+ +EAL +F  M  ++ I+ N  +  S +   S    +  GKQ+H    +   + +  
Sbjct: 653 SGNNEEALRVFARMN-REGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETE 711

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           +CNA+I MY+KCGS+  A++ F + S  K+ ++W+++++ Y  HG G EA+  +++M+  
Sbjct: 712 VCNAIISMYAKCGSISDAKKQFLELSM-KNEVSWNAMINAYSKHGFGSEALDSFDQMIHS 770

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
             +P+ +T+VGVLSAC   GL+++G+E + S+   Y + P  E   CVVDML RAG L R
Sbjct: 771 NVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSR 830

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A DFI  MP+EP   +W  L+SA V+H N E+ + A   L++LEPE+ + YV LSNLYA 
Sbjct: 831 AKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAV 890

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            R+WDA    R  MK++G+KK PG SWI +    H F V D+ HP +  I+E   DL
Sbjct: 891 CRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDL 947



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/479 (25%), Positives = 205/479 (42%), Gaps = 79/479 (16%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
            SL++ +Q H  +L LG  S+ +V   L++ Y   G    ++ +F+++  +D   YN+LI
Sbjct: 285 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLI 344

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           NG  +     +A+ELF  M    + PD  TLA++         L  G  +H  + K+GF 
Sbjct: 345 NGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFA 404

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +  +  +L+++Y KC      LN F E    NV  WNV +  +    D      S R+F
Sbjct: 405 SNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLR---NSFRIF 461

Query: 214 DQMK---------------------------------------RRNVYAWTAMINGYVQN 234
            QM+                                       + N Y  + +I+ Y + 
Sbjct: 462 RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKL 521

Query: 235 GDLDEALVLFLEM-----------------------------QLKDR-IEPNKVSLVSVL 264
           G LD A  + +                               Q+ DR I  ++V L + +
Sbjct: 522 GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAV 581

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             C+ L  L  G+QIH  A     + D+   NAL+ +YSKCG+++ A   FE +    D 
Sbjct: 582 SACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAG-DN 640

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           I W+++VSG+   G   EA+ ++ +M   G   +  T    + A   +  + +G +++ +
Sbjct: 641 IAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVH-A 699

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQL-DRALDFIK-TMPVEPSPSIWGALVSASVMHG 441
           VI        TE+C  ++ M  + G + D    F++ +M  E S   W A+++A   HG
Sbjct: 700 VITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVS---WNAMINAYSKHG 755



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 185/406 (45%), Gaps = 39/406 (9%)

Query: 32  THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           T+ SL   ++ HSQIL LG  +N  +S KL+  Y   G    +  VF+ +  + ++ +N 
Sbjct: 80  TNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNK 139

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA-TISKLSGEIKDLNVGMLIHGLSIKI 150
           +I          +   LF  M   NV+P++ T +  +    G     +V   IH   I  
Sbjct: 140 MIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQ 199

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G     I+ N L+ +Y + G                                   V R+R
Sbjct: 200 GLGKSTIVCNPLIDLYSRNG----------------------------------FVDRAR 225

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           RVFD +  ++  +W AMI+G  +N    EA+ LF +M +   I P   +  SVL  C  +
Sbjct: 226 RVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLG-IMPTPYAFSSVLSACKKI 284

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G+Q+HG  ++   + D  +CNAL+ +Y   GSL  A  +F + S  +DA+T++++
Sbjct: 285 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMS-QRDAVTYNTL 343

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++G    G G +A+ L+ +M   G +PD  T+  ++ AC   G +  G +++ +      
Sbjct: 344 INGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLH-AYTTKLG 402

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
                +I   ++++  +   ++ AL++     VE +  +W  ++ A
Sbjct: 403 FASNDKIEGALLNLYAKCSDIETALNYFLETEVE-NVVLWNVMLVA 447


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 184/636 (28%), Positives = 307/636 (48%), Gaps = 98/636 (15%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           L +A     +       + T    LQ+ A  +S    K+ HS I S     +  +  KL+
Sbjct: 82  LENAMELICMCKKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLV 141

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYN-------------------------------- 90
           + YA CG   + + VF++++ K+VYL+N                                
Sbjct: 142 SFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRP 201

Query: 91  -------------------SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
                              S+I+GYV N      L ++  M Y  +  D  T+ ++    
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
                L++G  +H L+IK  F   +  +N+L+ MY KCG     L +F++M +RNV SW 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 192 VRISGHASSGDFSLVVR--------------------------------SRRVFDQMK-- 217
             I+G+   G     ++                                 + V D +K  
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 381

Query: 218 --RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD---------RIEPNKVSLVSVLPT 266
               N++   A+++ Y + G ++ A  +F  M +KD          ++P+  ++  VLP 
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPA 441

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+SL  L  GK+IHG+ +R   + D  + NAL+D+Y KCG L  AR +F D   +KD ++
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPSKDLVS 500

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+ +++GYG+HG G+EA+  +N+M   G +PD ++ + +L AC  SGL+ +G   +  + 
Sbjct: 501 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
           N + I+P  E  AC+VD+L R G L +A +FI+T+P+ P  +IWGAL+     + + E+ 
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELA 620

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
           +   + + +LEPEN   YV L+N+YA + +W+ V  LR  +  +GL+K+PGCSWI I GK
Sbjct: 621 EKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGK 680

Query: 507 THCF-SVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            + F S  + +HP S +I  +L  +   M+     P
Sbjct: 681 VNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFP 716



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 196/401 (48%), Gaps = 25/401 (6%)

Query: 52  ISNPFVSTKLITA-YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           I  P + TK+ +  ++ C     S     +I H+ V  YN+ I  + +      A+EL  
Sbjct: 32  IHKPSLKTKIFSPIFSSCIPIRISATPTRTIDHQ-VTDYNAKILHFCQLGDLENAMELIC 90

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
               S +     T +++ +L   +K    G  +H +       VD  L   L+S Y  CG
Sbjct: 91  MCKKSELETK--TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCG 148

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV-----------VRSRR------VF 213
              E   +FD M ++NV  WN  +S +A  GDF              +  +R      +F
Sbjct: 149 DLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELF 208

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D++  R+V +W +MI+GYV NG  +  L ++ +M     I+ +  +++SVL  C++   L
Sbjct: 209 DKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVGCANSGTL 267

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           S GK +H  AI+      ++  N L+DMYSKCG LD A RVFE     ++ ++W+S+++G
Sbjct: 268 SLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y   G+   A+ L  +M   G K D++ I  +L AC RSG ++ G ++++  I    ++ 
Sbjct: 327 YTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD-YIKANNMES 385

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
              +C  ++DM  + G ++ A     TM V+   S W  ++
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIIS-WNTMI 425


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 176/521 (33%), Positives = 270/521 (51%), Gaps = 36/521 (6%)

Query: 20   SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            S T+   L   +   S    +  H++++     SN  + + L+T Y  CG    +  VF 
Sbjct: 750  SFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFY 809

Query: 80   SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +++ +DV  + S+I G+ +N    +AL+LF  M    V  D   + ++      ++++ +
Sbjct: 810  TMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVEL 869

Query: 140  GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
            G LIHG +IK G   DV +A SL+ MY K G F+E   +                     
Sbjct: 870  GHLIHGFAIKRGLESDVFVACSLVDMYSKFG-FAESAEM--------------------- 907

Query: 200  SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                        VF  M  +N+ AW +MI+ Y  NG L E  +  L   L+     + VS
Sbjct: 908  ------------VFSSMPNKNLVAWNSMISCYSWNG-LPEMSINLLPQILQHGFYLDSVS 954

Query: 260  LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
            + +VL   SS+  L  GK +H + IR ++  D+ + NALIDMY KCG L  A+ +FE+  
Sbjct: 955  ITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMP 1014

Query: 320  FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
              ++ +TW+S+++GYG HG   EAV L+ +M    + PD +T + ++++C  SG++ EGL
Sbjct: 1015 -RRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGL 1073

Query: 380  EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             ++  +   Y ++P  E  A VVD+LGRAG+LD A  FI+ MP++   S+W  L+ A   
Sbjct: 1074 NLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRA 1133

Query: 440  HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
            H N E+ +L   +L+++EP   SNYV L NLY     WD  A LR  MK RGLKKSPGCS
Sbjct: 1134 HRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCS 1193

Query: 500  WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540
            WI +  +   F   D +    + IY+ L  L   M G   S
Sbjct: 1194 WIEVKNRVDVFFSGDSSSTRRIEIYKTLSSLKSNMEGKGCS 1234



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 196/422 (46%), Gaps = 38/422 (9%)

Query: 36   LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
            L   +Q H  ++ +    +P+V T L+T YA  G    ++ VF+ +  K+V L N++I+ 
Sbjct: 665  LDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISA 724

Query: 96   YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
            ++ N    +AL L++ M       D FT++++      +   + G  +H   IK     +
Sbjct: 725  FIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSN 784

Query: 156  VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
            V + ++L++MY KCG   +                                  +  VF  
Sbjct: 785  VAIQSALLTMYYKCGSTED----------------------------------ADSVFYT 810

Query: 216  MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
            MK R+V AW +MI G+ QN    +AL LF  M+ K+ ++ +   + SV+     L  +  
Sbjct: 811  MKERDVVAWGSMIAGFCQNRRFKDALDLFRAME-KEGVKADSDVMTSVISAGLGLENVEL 869

Query: 276  GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
            G  IHGFAI++ L  DV +  +L+DMYSK G  + A  VF  S  NK+ + W+S++S Y 
Sbjct: 870  GHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVF-SSMPNKNLVAWNSMISCYS 928

Query: 336  LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
             +G    ++ L  +++  G   D ++I  VL A      + +G  ++   I   +I    
Sbjct: 929  WNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIR-LQIPSDL 987

Query: 396  EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            ++   ++DM  + G L  A    + MP   +   W ++++    HGN E     +K + +
Sbjct: 988  QVENALIDMYVKCGCLKYAQLIFENMP-RRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKR 1046

Query: 456  LE 457
             E
Sbjct: 1047 SE 1048



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 190/421 (45%), Gaps = 44/421 (10%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  A+  +L   +  H+ I+++G  S+P+++T LI  Y  CG    +  VF+ +
Sbjct: 443 TFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKM 502

Query: 82  QHK-----DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
                   D+ ++N +I+GY K     E L  F  M    + PD ++L+ +  +   +  
Sbjct: 503 SESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSW 562

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRIS 195
              G  IHG  I+  F  D  L  +L+ MY  C +  E  +LF ++  R N+ +WNV   
Sbjct: 563 YMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNV--- 619

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                                          MI G+V+NG  +++L L+  +   +  + 
Sbjct: 620 -------------------------------MIGGFVENGMWEKSLELY-SLAKNENCKL 647

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
              S       CS    L  G+Q+H   I+     D  +C +L+ MY+K GS++ A++VF
Sbjct: 648 VSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVF 707

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D   +K+    ++++S +  +G+ ++A+ LYNKM    +  D  TI  +LS C   G  
Sbjct: 708 -DQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSY 766

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           + G  ++  VI    ++    I + ++ M  + G  + A     TM  E     WG++++
Sbjct: 767 DFGRTVHAEVIKR-SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK-ERDVVAWGSMIA 824

Query: 436 A 436
            
Sbjct: 825 G 825



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 155/351 (44%), Gaps = 32/351 (9%)

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           I   V+   +++ALEL S   +S ++   FT  ++ K    + +L  G  IH   + +G 
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             D  +A SL++MYVKCG     L +FD+M +    + ++ +                  
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITV------------------ 514

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
                      W  +I+GY + G  +E L  F  MQ +  I P+  SL  VL  C+ L  
Sbjct: 515 -----------WNPVIDGYFKYGHFEEGLAQFCRMQ-ELGIRPDGYSLSIVLGICNRLSW 562

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
              G+QIHG+ IR     D  L  ALI MYS C     A  +F       + + W+ ++ 
Sbjct: 563 YMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIG 622

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           G+  +G   +++ LY+       K    +  G  +AC    +++ G +++  VI     +
Sbjct: 623 GFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKM-NFQ 681

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
               +C  ++ M  ++G ++ A      + ++    +  A++SA + +G +
Sbjct: 682 DDPYVCTSLLTMYAKSGSVEDAKKVFDQV-LDKEVELRNAMISAFIGNGRA 731


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 177/522 (33%), Positives = 280/522 (53%), Gaps = 49/522 (9%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLIT------AYALCGQPTQSQLVFNSIQHKDVYL 88
           SL    Q H+QIL      +P   T+ +T      A +  G  T + L+ NS+  ++ + 
Sbjct: 5   SLSQAMQLHAQILK---SPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFF 61

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSP--DDFTLATISKLSGEIKDLNVGMLIHGL 146
           +N++I  Y +     +AL LF +M     SP  D FT   + K    +K   VG  +HGL
Sbjct: 62  HNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGL 121

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
             K G   D  ++N L+ MY  CGK                            SG     
Sbjct: 122 IYKSGLESDRYVSNGLIHMYSSCGK----------------------------SG----- 148

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
            R+ +VF +M+ R+V +WT+MI+G+V +    EA+ LF EM ++D +EPN+ ++VSVL  
Sbjct: 149 -RAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEM-VEDGVEPNEATVVSVLRA 206

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+    +  G+++ G    +++  + ++  ALIDMY+KCGS+  AR+VF D   NKD   
Sbjct: 207 CADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVF-DGIVNKDVFA 265

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++SG   HG   EAV L+++M   G +PD  T+  VLSAC  +G  +EG   +NS+ 
Sbjct: 266 WTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMW 325

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM- 445
             Y IKPT +   C+VD+L R G LD A +FI+ MP+EP   +W  L+ AS +HG+ +  
Sbjct: 326 CKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRS 385

Query: 446 -QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
            Q +  + L++++ ++  +YV L N+YAS+ +W   A++R +M  +GL K PGCS I + 
Sbjct: 386 EQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVD 445

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
           G  H F+  D  H  +  IY  LD++   ++     P L ++
Sbjct: 446 GLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEV 487



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 137/331 (41%), Gaps = 46/331 (13%)

Query: 14  TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73
           TS      T    L+  A  +  ++ KQ H  I   G  S+ +VS  LI  Y+ CG+  +
Sbjct: 90  TSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGR 149

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           +  VF  ++ +DV  + S+I+G+V +    EA+ LF  M    V P++ T+ ++ +   +
Sbjct: 150 AYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACAD 209

Query: 134 IKDLNVGMLIHGL--SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
              + +G  + G+    KIG   +V  A  L+ MY KCG       +FD +  ++V +W 
Sbjct: 210 AGAVGMGRRVQGVIEERKIGLEANVRTA--LIDMYAKCGSIGSARKVFDGIVNKDVFAWT 267

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
             ISG A+ G   L   +  +FDQM+    R +    TA+++     G   E    F  M
Sbjct: 268 AMISGLANHG---LCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSM 324

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
             K  I+P                                    +     ++D+ ++ G 
Sbjct: 325 WCKYGIKPT-----------------------------------IQHYGCMVDLLARTGH 349

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           LD A           D + W +++    +HG
Sbjct: 350 LDEAEEFIRKMPIEPDVVLWRTLIWASKVHG 380


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 166/458 (36%), Positives = 264/458 (57%), Gaps = 8/458 (1%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE--IKDLNVGMLIHGL 146
           + S I  + +N    EA   FS M  + V P+  T  T+     +  ++ L  G  IH  
Sbjct: 57  WTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAY 116

Query: 147 SIKIGF-VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             K+G    +V++  +L+ MY KCG+      +FDEM  RN  SWN  I G   +G+   
Sbjct: 117 VRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGE--- 173

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  +  +FDQM  R+  +WT+MI G+V+ G  ++AL  F EMQL   +EP+ V+++SVL 
Sbjct: 174 VGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAG-VEPDYVTIISVLA 232

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C++L  L  G  I+ F ++++   ++ + N+LIDMYS+CG +  AR+VFE     +  +
Sbjct: 233 ACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMP-KRSLV 291

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W+S++ G+ L+G   EA+  +N M   G +PD ++  G L+AC  SGL++EGL+ ++ +
Sbjct: 292 SWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIM 351

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
             T +I P  E   C+VD+  RAG+L+ AL+ I  MP++P+  + G+L++A   HG+  +
Sbjct: 352 KRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGL 411

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            +   K L +++P + SNYV LSN+YA+  RWD  +++R  MK  G+ K PG S I + G
Sbjct: 412 AERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDG 471

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
             H F   DK H  + +IY MLD L L +R     P +
Sbjct: 472 SIHEFVAGDKTHVETQNIYAMLDHLFLELRICGYVPEI 509



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 134/287 (46%), Gaps = 37/287 (12%)

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS--LIGLSGGKQ 278
           + +WT+ I  + +NG L EA   F  MQ+   + PN ++ +++L  C+   L GL  G  
Sbjct: 54  IVSWTSSIALHCRNGQLPEAAAEFSRMQIAG-VRPNHITFLTLLSACTDFPLEGLRFGGS 112

Query: 279 IHGFAIRKELN-HDVSLCNALIDMYSKCGSLDCARRVFE--------------------- 316
           IH +  +  L+  +V +  AL+DMYSKCG LD A  +F+                     
Sbjct: 113 IHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNG 172

Query: 317 ---------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
                    D    +DAI+W+S++ G+   G   +A+  + +M   G +PD +TI+ VL+
Sbjct: 173 EVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLA 232

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           AC   G +  GL I N  +     K   +I   ++DM  R G +  A    + MP     
Sbjct: 233 ACANLGALGLGLWI-NRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLV 291

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           S W +++    ++G++E + L + +L++ E   P        L A S
Sbjct: 292 S-WNSMIVGFALNGHAE-EALEFFNLMRKEGFRPDGVSFTGALTACS 336



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 38/324 (11%)

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           H+ N      +I      G+  ++ ++F+ +  +D   + S+I G+VK     +ALE F 
Sbjct: 154 HVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFR 213

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M  + V PD  T+ ++      +  L +G+ I+   +K  F  ++ ++NSL+ MY +CG
Sbjct: 214 EMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCG 273

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
                  +F++MP+R++ SWN                                  +MI G
Sbjct: 274 CIRLARQVFEQMPKRSLVSWN----------------------------------SMIVG 299

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-KELN 289
           +  NG  +EAL  F  M+ K+   P+ VS    L  CS    +  G Q      R ++++
Sbjct: 300 FALNGHAEEALEFFNLMR-KEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKIS 358

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG--HEAVLLY 347
             +     L+D+YS+ G L+ A  V  +     + +   S+++    HG     E ++ Y
Sbjct: 359 PRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKY 418

Query: 348 NKMVCLGSKPDIITIVGVLSACGR 371
              V  GS  + + +  + +A GR
Sbjct: 419 LCEVDPGSDSNYVLLSNIYAAVGR 442


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 175/498 (35%), Positives = 282/498 (56%), Gaps = 38/498 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L L  Q H+ I+  G+  +  + TKL+      G  + ++ +F ++ + D +L+ SLI  
Sbjct: 25  LYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKS 84

Query: 96  YVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
             K+H  +  +L  +S M  SNVSP ++T  ++ K   ++  L  G ++HG  +  GF +
Sbjct: 85  TSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGL 144

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           DV +  +L+++Y KCG                                   ++ +R+VFD
Sbjct: 145 DVYVQAALVALYGKCGD----------------------------------LINARKVFD 170

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +++ R++ AW +MI+GY QNG   EA+ LF  M+ +  +EP+  + VSVL  C+ L   S
Sbjct: 171 KIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMK-ETGVEPDSATFVSVLSACAHLGAFS 229

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G  +H + +   L+ +V L  +LI+MY +CG++  AR VF DS   ++ + W++++SGY
Sbjct: 230 LGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVF-DSMKERNVVAWTAMISGY 288

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           G +G G +AV L+++M   G  P+ IT V VLSAC  +GL+NEG  ++ S+   Y + P 
Sbjct: 289 GTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPG 348

Query: 395 TEICACVVDMLGRAGQLDRALDFIK-TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
            E   C+VDMLGRAG LD A +FIK  +P  P+P+I  A++ A  MH N ++     + L
Sbjct: 349 VEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHL 408

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           +  EPENP++YV LSN+YA + R D V  +R  M  + LKK  G S + +  KT+ FS+ 
Sbjct: 409 LAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMG 468

Query: 514 DKAHPCSVSIYEMLDDLI 531
           DK+H  + +IY  LD+L+
Sbjct: 469 DKSHSETNAIYHYLDELM 486



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 149/318 (46%), Gaps = 49/318 (15%)

Query: 6   ARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           +R   + V+  NYT  +V   ++  A   +LK  +  H  +L  G   + +V   L+  Y
Sbjct: 100 SRMVLSNVSPSNYTFTSV---IKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALY 156

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125
             CG    ++ VF+ I+ + +  +NS+I+GY +N    EA+ LF  M  + V PD  T  
Sbjct: 157 GKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFV 216

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           ++      +   ++G  +H   +  G  ++V+L  SL++MY++CG  S+   +FD M +R
Sbjct: 217 SVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKER 276

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
           NV +W   ISG+ ++G  S  V    +F +M+R  ++                       
Sbjct: 277 NVVAWTAMISGYGTNGYGSQAV---ELFHEMRRNGLF----------------------- 310

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE------LNHDVSLCNALI 299
                    PN ++ V+VL  C+    ++ G+++   +IR+E      + H+V     L+
Sbjct: 311 ---------PNSITFVAVLSACAHAGLVNEGRRLFA-SIREEYHLVPGVEHNV----CLV 356

Query: 300 DMYSKCGSLDCARRVFED 317
           DM  + G LD A    ++
Sbjct: 357 DMLGRAGLLDEAYNFIKE 374


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 268/514 (52%), Gaps = 36/514 (7%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            Y S T    L+  A   +L   ++ H+Q +  G   + FV+  L T Y  CG+      
Sbjct: 214 EYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLT 273

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F  +  +DV  + ++I   V+      A++ F  M  S+VSP+++T A +      +  
Sbjct: 274 LFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLAR 333

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           +  G  +H L + +G    + + NS+M+MY KCG+ +                       
Sbjct: 334 IEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTS---------------------- 371

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                       S  +F +M RR++ +W+ +I GY Q G + EA  L   M+++   +P 
Sbjct: 372 ------------SSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGP-KPT 418

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + +L SVL  C ++  L  GKQ+H + +   L H   + +ALI+MY KCGS++ A R+F 
Sbjct: 419 EFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIF- 477

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D++ N D ++W+++++GY  HG   E + L+ K+  +G +PD +T +GVLSAC  +GL++
Sbjct: 478 DAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVD 537

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G   +N++   Y+I P+ E   C++D+L RAG+L  A   I+ MP      +W  L+ A
Sbjct: 538 LGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRA 597

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +HG+ E      + ++QLEP     +++L+N+YAS  +W   A++R +MK +G+ K P
Sbjct: 598 CRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEP 657

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           G SWI +      F   D++HP    IY MLD L
Sbjct: 658 GWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLL 691



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 215/473 (45%), Gaps = 74/473 (15%)

Query: 58  STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY-SN 116
           S K +      G    ++ +F+ +  KD   + +LI+GYV  +  +EAL LF NM   S 
Sbjct: 52  SNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESG 111

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           +  D F L+   K  G   D+N G L+HG ++K G V  V + ++L+ MY K GK  E  
Sbjct: 112 LRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGR 171

Query: 177 NLFDEMPQRNVGSWNVRISGHASSG-------DFSLVVRSRRVFDQMK------------ 217
            +F EMP RNV SW   I+G   +G        FS + RSR  +D               
Sbjct: 172 RVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSG 231

Query: 218 ----RRNVYAWTAMING--------------YVQNGDLDEALVLFLEMQLKD-------- 251
                R ++A  AM  G              Y + G L+  L LF +M ++D        
Sbjct: 232 ALNYGREIHA-QAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTII 290

Query: 252 ----------------------RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
                                  + PN+ +  +V+  C++L  +  G+Q+H   +   L 
Sbjct: 291 TTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLA 350

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
             +S+ N+++ MY+KCG L  +  +F + +  +D ++WS+I++GY   G   EA  L + 
Sbjct: 351 ASLSVENSIMTMYAKCGQLTSSSVIFHEMT-RRDIVSWSTIIAGYSQGGHVSEAFELLSW 409

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M   G KP    +  VLSACG   ++  G +++  V++   ++ T  + + +++M  + G
Sbjct: 410 MRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSI-GLEHTAMVLSALINMYCKCG 468

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYK-SLIQLEPEN 460
            ++ A         +   S W A+++    HG S E+ DL  K   + L P++
Sbjct: 469 SIEEASRIFDAAENDDIVS-WTAMINGYAEHGYSREVIDLFEKIPRVGLRPDS 520



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 146/328 (44%), Gaps = 41/328 (12%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V+   YT A V   +   A    ++  +Q H+ IL LG  ++  V   ++T YA CGQ T
Sbjct: 314 VSPNEYTFAAV---ISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLT 370

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            S ++F+ +  +D+  ++++I GY +    +EA EL S M      P +F LA++    G
Sbjct: 371 SSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACG 430

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +  L  G  +H   + IG     ++ ++L++MY KCG   E   +FD     ++ SW  
Sbjct: 431 NMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTA 490

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            I+G+A  G       SR V D                               E   +  
Sbjct: 491 MINGYAEHG------YSREVID-----------------------------LFEKIPRVG 515

Query: 253 IEPNKVSLVSVLPTCS--SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           + P+ V+ + VL  CS   L+ L G +  +  + + +++        +ID+  + G L  
Sbjct: 516 LRPDSVTFIGVLSACSHAGLVDL-GFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSD 574

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           A  + E   F++D + WS+++    +HG
Sbjct: 575 AEHMIEAMPFHRDDVVWSTLLRACRVHG 602



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 137/260 (52%), Gaps = 12/260 (4%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD--RIEPNKVSLVSVLPT 266
           +RR+FD+M +++  +WT +I+GYV   D  EAL+LF  M+++   RI+P  +SL      
Sbjct: 68  ARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAH--KA 125

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C     ++ G+ +HG+A++  L + V + +AL+DMY+K G +   RRVF +    ++ ++
Sbjct: 126 CGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPM-RNVVS 184

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++I++G    G   EA++ +++M     + D  T    L AC  SG +N G EI+   +
Sbjct: 185 WTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAM 244

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
                  ++ +   +  M  + G+L+  L   + M +    S W  +++  V  G  E  
Sbjct: 245 KK-GFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVS-WTTIITTLVQMGQEE-- 300

Query: 447 DLAYKSLIQLEPEN--PSNY 464
             A ++ I++   +  P+ Y
Sbjct: 301 -CAVQAFIRMRESDVSPNEY 319


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  304 bits (778), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 169/495 (34%), Positives = 264/495 (53%), Gaps = 35/495 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L+  KQ H   +  G   N F    L   YA  G    +++ F  I++ D+  +N++I  
Sbjct: 378 LEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAA 437

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           +  N   NEA++ F  M +  ++PD  T  ++    G    LN G  IH   +KIGF  +
Sbjct: 438 FADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKE 497

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
           + + NSL++MY KC    + LN+F ++  RN                             
Sbjct: 498 ITVCNSLLTMYTKCSHLHDALNVFRDI-SRNA---------------------------- 528

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
               N+ +W A+++  +Q     E   L+ EM      +P+ +++ ++L TC+ L  L  
Sbjct: 529 ----NLVSWNAILSACLQKKQEGETFRLYKEMHFSGN-KPDSITITTLLGTCAELTSLGV 583

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G Q+H ++I+  L  DVS+CN LIDMY+KCGSL  AR VF DS+ N D ++WSS++ GY 
Sbjct: 584 GNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVF-DSTQNLDIVSWSSLIVGYA 642

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
             G GHEA+ L+  M  LG +P+ +T +G LSAC   GL+ EG  +Y S+   + I PT 
Sbjct: 643 QCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTR 702

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           E  +C+VD+L RAG L  A  FI+   ++   + W  L++A   H N ++ +    ++++
Sbjct: 703 EHFSCIVDLLARAGCLHEAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERGAGNILK 762

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           L+P N +  V L N++AS+  W+ VA+LR +MK  G++K PG SWI +  K H F   D 
Sbjct: 763 LDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGVQKVPGQSWIEVKDKFHIFFSEDS 822

Query: 516 AHPCSVSIYEMLDDL 530
           +HP    IY ML++L
Sbjct: 823 SHPQRNLIYTMLEEL 837



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 200/423 (47%), Gaps = 36/423 (8%)

Query: 14  TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73
           ++ ++  +T    +   A  RSL   K+ H  +L   +  +  +   +I  Y  CG    
Sbjct: 153 SNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKD 212

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           ++ VF+++Q  +V  + S+I+GY +N   N+A+ ++  M  S   PD  T  ++ K    
Sbjct: 213 ARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYI 272

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
             D+++G  +H   IK  F   +   N+L+SMY   G+     N+F  +P +++ SW   
Sbjct: 273 AGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWG-- 330

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                                            MI GY+Q G   EAL LF ++  +   
Sbjct: 331 --------------------------------TMITGYIQLGYRVEALYLFRDLLRQGTY 358

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           +PN+    SV   CSSL+ L  GKQ+HG  ++  L  +V    +L DMY+K G L  A+ 
Sbjct: 359 QPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKM 418

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
            F     N D ++W++I++ +  +G  +EA+  + +M+ +G  PD IT + +L  CG   
Sbjct: 419 AFCQIK-NPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPV 477

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            +N+G +I++ ++     K  T +C  ++ M  +   L  AL+  + +    +   W A+
Sbjct: 478 RLNQGRQIHSYIVKIGFDKEIT-VCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAI 536

Query: 434 VSA 436
           +SA
Sbjct: 537 LSA 539



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 137/275 (49%), Gaps = 13/275 (4%)

Query: 239 EALVLFLEMQLKD---RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
           EAL  F +  LK+     EP+  +  S++  C++   L   K+IH   ++      + L 
Sbjct: 141 EALEAF-DFHLKNSNSHFEPS--TYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQ 197

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           N +I+MY KCGS+  AR+VF+      + ++W+S++SGY  +G+ ++A+++Y +M   G 
Sbjct: 198 NHMINMYGKCGSMKDARKVFDTMQL-PNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQ 256

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
            PD +T   V+ AC  +G I+ G +++  VI ++     T   A ++ M    GQ++ A 
Sbjct: 257 FPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNA-LISMYTNFGQIEHAS 315

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
           +    +P +   S WG +++  +  G        ++ L++     P+ ++  S   A S 
Sbjct: 316 NVFTRIPTKDLIS-WGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSS 374

Query: 476 --RWDAVAELRTMMKDRGLKKS--PGCSWISIHGK 506
               +   ++  M    GL+++   GCS   ++ K
Sbjct: 375 LLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAK 409



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 9   TFALVTSRNYT-----SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
           TF L    +++     S T+   L   A   SL +  Q H   +  G I +  V   LI 
Sbjct: 549 TFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLID 608

Query: 64  AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
            YA CG    ++ VF+S Q+ D+  ++SLI GY +    +EAL LF  M    V P++ T
Sbjct: 609 MYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVT 668


>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score =  304 bits (778), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 172/468 (36%), Positives = 268/468 (57%), Gaps = 11/468 (2%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           ++ H+ I+  G I N  VS KL+  Y  CG    ++ +F+ +  + +  YN LI GY+K 
Sbjct: 62  QKIHAHIVKTGFIPNTNVSIKLLILYLKCGCLKYARQMFDELPQRTLSAYNYLIGGYLKL 121

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL----NVGMLIHGLSIKIGFVVD 155
               +++ L   +      PD FT + I K S    ++    N+G ++HG  +K     D
Sbjct: 122 GLVQDSMNLVRRLVLEGQRPDGFTYSMILKASTSGDNVTLSCNLGSVVHGQILKSEVEPD 181

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
            +L  +L+  YVK G+      +FD M ++NV      ISG+ + G    V  +  +F++
Sbjct: 182 DVLYTALVDSYVKSGRVGYARKVFDMMMEKNVICSTSMISGYMNRGS---VEDAEEIFER 238

Query: 216 MKRRNVYAWTAMINGYVQNGDLDE-ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
              ++V  + AMI GY ++    E AL +++EMQ +    PN  +  SV+  CS L G  
Sbjct: 239 TVEKDVVVFNAMIEGYSKSVQTAEKALEVYVEMQ-RYGFRPNLSTFASVIGACSVLAGFE 297

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+Q+ G  +++E   +V   +ALIDMYSKCG ++ ARR FE     K+  +WSS++ GY
Sbjct: 298 IGQQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQMP-EKNVFSWSSMIDGY 356

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           G +G+  EA+ L++KM     +P+ +T +G LSACG +GL+++G EI+ S+   Y +KP 
Sbjct: 357 GKNGRPDEALQLFHKMQDCCIEPNYVTFLGALSACGHAGLVSKGREIFESMEREYSLKPG 416

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E  AC+VD+LGRAG L+ A +F+  MP +PS  +W AL+SA  +HGN EM  +A   L 
Sbjct: 417 MEHYACMVDLLGRAGSLNLAWEFVMGMPEKPSSDVWAALLSACNLHGNVEMASVAANELF 476

Query: 455 QLEPENPSN-YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           +L  E  S  YV+LSN  A++ +WD V E+R +MK RG+ K  G SW+
Sbjct: 477 KLNAEGRSGAYVALSNTLAAAGKWDGVTEVREIMKSRGILKDTGSSWV 524


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 172/538 (31%), Positives = 285/538 (52%), Gaps = 69/538 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T    L+  A  ++ +  +Q H  +L LG   + +V T LI  Y   G+   ++ VF+
Sbjct: 103 SYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFD 162

Query: 80  SIQHKDVYLY-------------------------------NSLINGYVKNHGHNEALEL 108
              H+DV  Y                               N+LI+GY +   + EALEL
Sbjct: 163 QSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALEL 222

Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
           F  M  +NV PD+ T+ T+     +   + +G  +H      GF  ++ + N+L+ +Y+K
Sbjct: 223 FKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIK 282

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG+                           +SG          +F+ +  ++V +W  +I
Sbjct: 283 CGEVE------------------------TASG----------LFEGLSYKDVISWNTLI 308

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--K 286
            GY       EAL+LF EM L+    PN+V+++S+LP C+ L  +  G+ IH +  +  K
Sbjct: 309 GGYTHMNLYKEALLLFQEM-LRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 367

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
            +++  SL  +LIDMY+KCG ++ A++VF DS  N+   +W++++ G+ +HG+ + A  +
Sbjct: 368 GVSNPSSLRTSLIDMYAKCGDIEAAQQVF-DSMLNRSLSSWNAMIFGFAMHGRANPAFDI 426

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           +++M   G +PD IT VG+LSAC  SG+++ G  I+ S+   Y+I P  E   C++D+LG
Sbjct: 427 FSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLG 486

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466
            +G    A + I +M ++P   IW +L+ A  MHGN E+ +   ++LI++EP+N  +YV 
Sbjct: 487 HSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVL 546

Query: 467 LSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           LSN+YA++ RW+ VA+ R ++ D+G+KK PGCS I I    H F + DK HP +  IY
Sbjct: 547 LSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIY 604



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 235/432 (54%), Gaps = 16/432 (3%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ---PT 72
           RN+ S ++ H  +   T +SL++    H++++  G  +  +  +KLI    L       T
Sbjct: 1   RNHPSLSLLHNCK---TLQSLRII---HAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLT 54

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            +  VF+SIQ  ++ ++N++  G+  +     AL L+  M    + P+ +T   + K   
Sbjct: 55  YAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACA 114

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
           + K    G  IHG  +K+G  +D+ +  SL++MYVK G+  +   +FD+   R+V S+  
Sbjct: 115 KSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTA 174

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            I G+AS+G    +  ++++FD++  ++V +W A+I+GY + G+  EAL LF EM +K  
Sbjct: 175 LIKGYASNG---YIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEM-MKTN 230

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           ++P++ ++V+VL  C+    +  G+Q+H +        ++ + NALID+Y KCG ++ A 
Sbjct: 231 VKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETAS 290

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
            +FE  S+ KD I+W++++ GY       EA+LL+ +M+  G  P+ +T++ +L AC   
Sbjct: 291 GLFEGLSY-KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHL 349

Query: 373 GLINEGLEIYNSVINTYR-IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           G I+ G  I+  +    + +   + +   ++DM  + G ++ A     +M +  S S W 
Sbjct: 350 GAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWN 408

Query: 432 ALVSASVMHGNS 443
           A++    MHG +
Sbjct: 409 AMIFGFAMHGRA 420


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 166/502 (33%), Positives = 274/502 (54%), Gaps = 38/502 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+     R + L +Q HS  +  G  S+ +VS  LI  Y+  G   +++ V   ++ KDV
Sbjct: 352 LRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV 411

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT-ISKLSGEIKDLNVGMLIHG 145
             + S+I GYV++    +AL  F  M    + PD+  LA+ IS  +G I  +  G+ IH 
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAG-INAMRQGLQIHA 470

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
                G+  DV + N+L+++Y +CG+  E  +                            
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFS---------------------------- 502

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                  F++++ ++   W  +++G+ Q+G  +EAL +F+ M  +  ++ N  + VS L 
Sbjct: 503 ------SFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMD-QSGVKHNVFTFVSALS 555

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
             ++L  +  GKQIH   I+   + +  + NALI +Y KCGS + A+  F + S  ++ +
Sbjct: 556 ASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEV 614

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W++I++    HG+G EA+ L+++M   G KP+ +T +GVL+AC   GL+ EGL  + S+
Sbjct: 615 SWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 674

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
            + Y I+P  +  ACV+D+ GRAGQLDRA  FI+ MP+     +W  L+SA  +H N E+
Sbjct: 675 SDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEV 734

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            + A K L++LEP + ++YV LSN YA + +W    ++R MM+DRG++K PG SWI +  
Sbjct: 735 GEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKN 794

Query: 506 KTHCFSVADKAHPCSVSIYEML 527
             H F V D+ HP +  IY  L
Sbjct: 795 VVHAFFVGDRLHPLAEQIYNFL 816



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 136/484 (28%), Positives = 220/484 (45%), Gaps = 61/484 (12%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+Q    G  S  FV   +IT Y  CG    ++ VF  + H+D   +N+LI+G+ +  GH
Sbjct: 166 HAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC-GH 224

Query: 103 NE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
            E ALE+F  M +S +SPD  T++++      + DL  G  +H    K G   D I+  S
Sbjct: 225 GEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGS 284

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+ +YVKCG     L +F+                   S D               R NV
Sbjct: 285 LLDLYVKCGDVETALVIFN-------------------SSD---------------RTNV 310

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
             W  M+  + Q  DL ++  LF +MQ    I PN+ +   +L TC+    +  G+QIH 
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHS 369

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
            +++     D+ +   LIDMYSK G L+ ARRV E     KD ++W+S+++GY  H    
Sbjct: 370 LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK-EKDVVSWTSMIAGYVQHECCK 428

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV-INTYRIKPTTEICAC 400
           +A+  + +M   G  PD I +   +S C     + +GL+I+  + ++ Y       I   
Sbjct: 429 DALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGY--SGDVSIWNA 486

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           +V++  R G++  A  F     +E    I W  LVS     G   + + A K  ++++  
Sbjct: 487 LVNLYARCGRIREA--FSSFEEIEHKDEITWNGLVSGFAQSG---LHEEALKVFMRMDQS 541

Query: 460 NPSN--YVSLSNLYASSRRWDAVAEL--------RTMMKDRGLKKSPGCSWISIHGKTHC 509
              +  +  +S L AS+     +AE+        R +      +   G + IS++GK   
Sbjct: 542 GVKHNVFTFVSALSASAN----LAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGS 597

Query: 510 FSVA 513
           F  A
Sbjct: 598 FEDA 601



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 141/293 (48%), Gaps = 39/293 (13%)

Query: 93  INGYVKNHGHNEALELFSN--MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           + G++ +    + L LF++    +  + P DF  A +    G  +   V   IH  ++  
Sbjct: 13  LAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACA-LRACRGNGRRWQVVPEIHAKAVTR 71

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G     I+ N L+ +Y K G                                  LV+ +R
Sbjct: 72  GLGKYRIVGNLLIDLYSKNG----------------------------------LVLPAR 97

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           RVF+++  R+  +W AM++GY QNG  +EAL L+ +M  +  + P    L SVL +C+  
Sbjct: 98  RVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMH-RAGVVPTPYVLSSVLSSCTKA 156

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
              + G+ IH    +     ++ + NA+I +Y +CGS   A RVF D   ++D +T++++
Sbjct: 157 ELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP-HRDTVTFNTL 215

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
           +SG+   G G  A+ ++ +M   G  PD +TI  +L+AC   G + +G ++++
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHS 268


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 164/515 (31%), Positives = 286/515 (55%), Gaps = 40/515 (7%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           NYT   V   L   A   ++KL ++ H ++L  G  S+ FV   LI  Y  CG    +  
Sbjct: 111 NYTYPFV---LAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACD 167

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIK 135
           VF+    +DV  +N +IN ++      +A +L   M    N+ PD+ T+ ++     ++ 
Sbjct: 168 VFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLG 227

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           +L  G  +H  S ++G   ++ + N+++ MY KC                          
Sbjct: 228 NLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDD------------------------ 263

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                     +  ++ VF++++ ++V +WT+M++G  ++G   EAL LF +MQL ++IE 
Sbjct: 264 ----------IESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQL-NKIEL 312

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           ++++LV VL  C+    L  GK IH    + E+N D+ L  AL+DMY+KCGS+D A +VF
Sbjct: 313 DEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVF 372

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
                 ++  TW++++ G  +HG G +A+ L+++M      PD +T + +L AC  +GL+
Sbjct: 373 RRMRV-RNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLV 431

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           +EGL ++ ++ N ++I+P  E   CVVD+L RA ++D AL FI+ MP++ +  +W  L+ 
Sbjct: 432 DEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLG 491

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
           A    G+ ++ +   + +I+LEP++   YV LSNLYA   +WD   +LR  MK++G++K+
Sbjct: 492 ACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKT 551

Query: 496 PGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           PGCSWI ++G  H F   D++H  +  IY M++++
Sbjct: 552 PGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEM 586


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 182/589 (30%), Positives = 301/589 (51%), Gaps = 74/589 (12%)

Query: 26  FLQVSATHRSLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
            L+ + +  S++L +  H++I+ +L     PF++  LI  Y+    P  ++LV      +
Sbjct: 12  LLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           +V  + SLI+G  +N   + AL  F  M    V P+DFT     K    ++    G  IH
Sbjct: 72  NVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIH 131

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV------------ 192
            L++K G ++DV +  S   MY K     +   LFDE+P+RN+ +WN             
Sbjct: 132 ALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPR 191

Query: 193 ----------RISGHASSGDF--------------------SLVVRS------------- 209
                     RI GH +S  F                     LV+RS             
Sbjct: 192 EAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLI 251

Query: 210 ------------RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                         +F +M  +N  +W +++  YVQN + ++A VL+L  + KD +E + 
Sbjct: 252 DFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSR-KDIVETSD 310

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
             + SVL  C+ + GL  G+ IH  A++  +   + + +AL+DMY KCG ++ + + F++
Sbjct: 311 FMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDE 370

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV---CLGSKPDIITIVGVLSACGRSGL 374
               K+ +T +S++ GY   G+   A+ L+ +M    C G  P+ +T V +LSAC R+G 
Sbjct: 371 MP-EKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGC-GPTPNYMTFVSLLSACSRAGA 428

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +  G++I++S+ +TY I+P  E  +C+VDMLGRAG ++RA +FIK MP++P+ S+WGAL 
Sbjct: 429 VENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQ 488

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
           +A  MHG  ++  LA ++L +L+P++  N+V LSN +A++ RW     +R  +K  G+KK
Sbjct: 489 NACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKK 548

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
             G SWI++  + H F   D++H  +  I   L  L   M  A   P L
Sbjct: 549 GAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDL 597



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 141/360 (39%), Gaps = 46/360 (12%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T   FL   +    L L  Q H  +L  G  ++  V   LI  Y  C Q   S+++F 
Sbjct: 209 SITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFT 268

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  K+   + SL+  YV+NH   +A  L+       V   DF ++++      +  L +
Sbjct: 269 EMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLEL 328

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IH  ++K      + + ++L+ MY KCG   +    FDEMP++N+ + N  I G   
Sbjct: 329 GRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGG--- 385

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKV 258
                                          Y   G +D AL LF EM  +     PN +
Sbjct: 386 -------------------------------YAHQGQVDMALALFEEMAPRGCGPTPNYM 414

Query: 259 SLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           + VS+L  CS    +  G +I       + I     H     + ++DM  + G ++ A  
Sbjct: 415 TFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEH----YSCIVDMLGRAGMVERAYE 470

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP--DIITIVGVLSACGR 371
             +          W ++ +   +HGK    +L    +  L  K   + + +    +A GR
Sbjct: 471 FIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGR 530


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/502 (33%), Positives = 274/502 (54%), Gaps = 38/502 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+     R + L +Q HS  +  G  S+ +VS  LI  Y+  G   +++ V   ++ KDV
Sbjct: 352 LRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV 411

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT-ISKLSGEIKDLNVGMLIHG 145
             + S+I GYV++    +AL  F  M    + PD+  LA+ IS  +G I  +  G+ IH 
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAG-INAMRQGLQIHA 470

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
                G+  DV + N+L+++Y +CG+  E  +                            
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFS---------------------------- 502

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                  F++++ ++   W  +++G+ Q+G  +EAL +F+ M  +  ++ N  + VS L 
Sbjct: 503 ------SFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMD-QSGVKHNVFTFVSALS 555

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
             ++L  +  GKQIH   I+   + +  + NALI +Y KCGS + A+  F + S  ++ +
Sbjct: 556 ASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEV 614

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W++I++    HG+G EA+ L+++M   G KP+ +T +GVL+AC   GL+ EGL  + S+
Sbjct: 615 SWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 674

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
            + Y I+P  +  ACV+D+ GRAGQLDRA  FI+ MP+     +W  L+SA  +H N E+
Sbjct: 675 SDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEV 734

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            + A K L++LEP + ++YV LSN YA + +W    ++R MM+DRG++K PG SWI +  
Sbjct: 735 GEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKN 794

Query: 506 KTHCFSVADKAHPCSVSIYEML 527
             H F V D+ HP +  IY  L
Sbjct: 795 VVHAFFVGDRLHPLAEQIYNFL 816



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 136/484 (28%), Positives = 220/484 (45%), Gaps = 61/484 (12%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+Q    G  S  FV   +IT Y  CG    ++ VF  + H+D   +N+LI+G+ +  GH
Sbjct: 166 HAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC-GH 224

Query: 103 NE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
            E ALE+F  M +S +SPD  T++++      + DL  G  +H    K G   D I+  S
Sbjct: 225 GEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGS 284

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+ +YVKCG     L +F+                   S D               R NV
Sbjct: 285 LLDLYVKCGDVETALVIFN-------------------SSD---------------RTNV 310

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
             W  M+  + Q  DL ++  LF +MQ    I PN+ +   +L TC+    +  G+QIH 
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHS 369

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
            +++     D+ +   LIDMYSK G L+ ARRV E     KD ++W+S+++GY  H    
Sbjct: 370 LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK-EKDVVSWTSMIAGYVQHECCK 428

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV-INTYRIKPTTEICAC 400
           +A+  + +M   G  PD I +   +S C     + +GL+I+  + ++ Y       I   
Sbjct: 429 DALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGY--SGDVSIWNA 486

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           +V++  R G++  A  F     +E    I W  LVS     G   + + A K  ++++  
Sbjct: 487 LVNLYARCGRIREA--FSSFEEIEHKDEITWNGLVSGFAQSG---LHEEALKVFMRMDQS 541

Query: 460 NPSN--YVSLSNLYASSRRWDAVAEL--------RTMMKDRGLKKSPGCSWISIHGKTHC 509
              +  +  +S L AS+     +AE+        R +      +   G + IS++GK   
Sbjct: 542 GVKHNVFTFVSALSASAN----LAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGS 597

Query: 510 FSVA 513
           F  A
Sbjct: 598 FEDA 601



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 141/293 (48%), Gaps = 39/293 (13%)

Query: 93  INGYVKNHGHNEALELFSN--MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           + G++ +    + L LF++    +  + P DF  A +    G  +   V   IH  ++  
Sbjct: 13  LAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACA-LRACRGNGRRWQVVPEIHAKAVTR 71

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G     I+ N L+ +Y K G                                  LV+ +R
Sbjct: 72  GLGKYRIVGNLLIDLYSKNG----------------------------------LVLPAR 97

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           RVF+++  R+  +W AM++GY QNG  +EAL L+ +M  +  + P    L SVL +C+  
Sbjct: 98  RVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMH-RAGVVPTPYVLSSVLSSCTKA 156

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
              + G+ IH    +     ++ + NA+I +Y +CGS   A RVF D   ++D +T++++
Sbjct: 157 ELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP-HRDTVTFNTL 215

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
           +SG+   G G  A+ ++ +M   G  PD +TI  +L+AC   G + +G ++++
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHS 268


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/488 (34%), Positives = 264/488 (54%), Gaps = 5/488 (1%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H   L LG +   FV   L+ +YA  G    S+  F+ +  ++V  +NS+I GY +    
Sbjct: 135 HGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDT 194

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            E   LF  M       D+FTL ++     +  +L +G L+H   +  G  VD+IL ++L
Sbjct: 195 REVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESAL 254

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + MY KCG        F+ MP ++V SW   +      G    V  +R  FD M  RN+ 
Sbjct: 255 VDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGS---VNAARCWFDHMPERNIV 311

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +W AMI+ YVQ G   EAL L+ +MQ +  + P++++LV+VL     +  L+ GK +H +
Sbjct: 312 SWNAMISCYVQRGQCHEALDLYNQMQSQG-LAPDEITLVAVLSASGRIGDLTVGKMVHLY 370

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
                 N DVSL N+L+DMY+KCG +D A  +F +   N++ ++W+ I+ G  +HG+  +
Sbjct: 371 IRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMC-NRNVVSWNVIIGGLAMHGRALD 429

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
            +  +  MV     PD IT V +LSAC   GL+  G   + S+ + Y +K   E  AC+V
Sbjct: 430 TITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMV 489

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGR G L++A+  IK MP++P   +WGAL+ A  +HGN ++     K L++LE  +  
Sbjct: 490 DLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGG 549

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            +V +SNL   + +W+ +  LR +MK+ G +K  G S I I+   H F V D  H  S  
Sbjct: 550 LFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINNSIHEFGVEDIRHERSSE 609

Query: 523 IYEMLDDL 530
           IY ++D L
Sbjct: 610 IYAVVDQL 617



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 204/458 (44%), Gaps = 78/458 (17%)

Query: 34  RSLKLTKQSHSQIL---SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYN 90
           RS++   Q H+ +L   SL   S+  +++    A A  G    ++ +F+ I   D  +YN
Sbjct: 22  RSIQRLNQLHAHLLVHGSLSAASDLLLASYCALAKAGHGVLCHARRLFDGIPGPDRVMYN 81

Query: 91  SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           ++I  Y  +    EAL L   M    + P++FTL  + K     +     + +HG+++++
Sbjct: 82  TIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHGVALRL 141

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G V  V + N+L+  Y   G   +    FDEM  RNV SWN  I G+A +GD   V    
Sbjct: 142 GLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVC--- 198

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
            +F +M+R+                        FLE         ++ +LVS+L  CS  
Sbjct: 199 SLFGEMRRQG-----------------------FLE---------DEFTLVSLLIACSQE 226

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE-------------- 316
             L  G+ +H   +      D+ L +AL+DMY KCG L  ARR FE              
Sbjct: 227 GNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSML 286

Query: 317 ----------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
                           D    ++ ++W++++S Y   G+ HEA+ LYN+M   G  PD I
Sbjct: 287 CAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEI 346

Query: 361 TIVGVLSACGRSGLINEG----LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           T+V VLSA GR G +  G    L I +++ N     P   +   ++DM  + GQ+D A+ 
Sbjct: 347 TLVAVLSASGRIGDLTVGKMVHLYIRDNIYN-----PDVSLVNSLLDMYAKCGQVDTAIS 401

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
               M      S W  ++    MHG +      ++S++
Sbjct: 402 LFSEMCNRNVVS-WNVIIGGLAMHGRALDTITFFRSMV 438


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 176/526 (33%), Positives = 281/526 (53%), Gaps = 53/526 (10%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL---CGQ-----PTQSQ-- 75
            L+ S   +  KL    H+  + LG  S+ +++  LI  YA     G+     P + +  
Sbjct: 116 LLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESG 175

Query: 76  -----LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM-YYSNVSPDDFTLATISK 129
                 VF+ +  +DV  +N++I G+ +N  + EAL++   M     + PD FTL++I  
Sbjct: 176 IDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILP 235

Query: 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189
           +  E  D+N G  IHG +++ GF  DV + +SL+ MY KC +  EC              
Sbjct: 236 IFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRL-EC-------------- 280

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
                              S R F  + R++  +W ++I G VQNG+ D  L  F  M L
Sbjct: 281 -------------------SLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRM-L 320

Query: 250 KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
           K+ ++P  VS  SV+P C+ L  LS G+Q+HG  +R   + +  + ++L+DMY+KCG++ 
Sbjct: 321 KENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIK 380

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            AR VF D    +D + W++I+ G  +HG   +AV L+  M+  G +P  +  + VL+AC
Sbjct: 381 MARYVF-DRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTAC 439

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-VEPSPS 428
             +GL++EG   +NS+   + I P  E  A V D+LGRAG+L+ A DFI  M  V+P+ S
Sbjct: 440 SHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGS 499

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
           +W  L++A   H + E+ +     L+ ++ EN   YV +SN+Y++++RW   A LR  M+
Sbjct: 500 VWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMR 559

Query: 489 DRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
            +GLKK+P CSWI +  + H F   DK+HP    I + LD L+  M
Sbjct: 560 KKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQM 605



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 179/355 (50%), Gaps = 22/355 (6%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           ++S+I  Y  +   + +   F++M   +V P+     ++ K S  +K   +   +H  ++
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           ++G   D+ +AN+L++ Y    KF     +FD  P+R              SG    +  
Sbjct: 138 RLGLDSDLYIANALINTY---AKFHNAGKVFDVFPKR------------GESG----IDC 178

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
            ++VFD M  R+V +W  +I G+ QNG   EAL +  EM    +++P+  +L S+LP  +
Sbjct: 179 VKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFA 238

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
             + ++ GK+IHG+A+R   + DV + ++LIDMY+KC  L+C+ R F      KDAI+W+
Sbjct: 239 EHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILP-RKDAISWN 297

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           SI++G   +G+    +  + +M+    KP  ++   V+ AC     ++ G +++  ++  
Sbjct: 298 SIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVR- 356

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
                   I + +VDM  + G +  A  ++     +     W A++    MHG++
Sbjct: 357 LGFDDNEFIASSLVDMYAKCGNIKMA-RYVFDRIDKRDMVAWTAIIMGCAMHGHA 410



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 109/249 (43%), Gaps = 35/249 (14%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L + A H  +   K+ H   +  G   + F+ + LI  YA C +   S   F 
Sbjct: 227 SFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFY 286

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  KD   +NS+I G V+N   +  L  F  M   NV P   + +++      +  L++
Sbjct: 287 ILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSL 346

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG  +++GF  +  +A+SL+ MY KCG       +FD + +R+             
Sbjct: 347 GRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRD------------- 393

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                + AWTA+I G   +G   +A+ LF E  L+D + P  V+
Sbjct: 394 ---------------------MVAWTAIIMGCAMHGHALDAVSLF-ENMLEDGVRPCYVA 431

Query: 260 LVSVLPTCS 268
            ++VL  CS
Sbjct: 432 FMAVLTACS 440


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 173/537 (32%), Positives = 282/537 (52%), Gaps = 71/537 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  A  ++ +  +Q H  +L LG+  + +V T LI+ Y   G+   ++ VF+  
Sbjct: 90  TFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQS 149

Query: 82  QHKDVYLY-------------------------------NSLINGYVKNHGHNEALELFS 110
            H+DV  Y                               N++I+GY +   + EALELF 
Sbjct: 150 SHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFK 209

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M  +NV PD+ T+ ++     +   + +G  +H      GF  ++ + N+L+ +Y+KCG
Sbjct: 210 EMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCG 269

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
           +      LF+ +  ++V SWN                                   +I G
Sbjct: 270 EVETACGLFEGLSYKDVISWNT----------------------------------LIGG 295

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN- 289
           Y       EAL+LF EM L+    PN V+++S+LP C+ L  +  G+ IH + I K L  
Sbjct: 296 YTHMNLYKEALLLFQEM-LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY-INKRLKG 353

Query: 290 --HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
             +  S   +LIDMY+KCG ++ A++VF DS  N+   +W++++ G+ +HG+ + A  ++
Sbjct: 354 VANASSHRTSLIDMYAKCGDIEAAQQVF-DSILNRSLSSWNAMIFGFAMHGRANAAFDIF 412

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
           ++M     +PD IT VG+LSAC  SG+++ G  I+ S+   Y+I P  E   C++D+LG 
Sbjct: 413 SRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGH 472

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           +G    A + I TM +EP   IW +L+ A  MHGN E+ +   ++LI++EP+NP +YV L
Sbjct: 473 SGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLL 532

Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           SN+YA++ RW+ VA++R ++ D+G+KK PGCS I I    H F + DK HP +  IY
Sbjct: 533 SNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 589



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 124/427 (29%), Positives = 227/427 (53%), Gaps = 18/427 (4%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALC----GQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
           H+Q++  G  +  +  +KLI    L     G P     VF +IQ  ++ ++N++  G+  
Sbjct: 7   HAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAIS-VFETIQEPNLLIWNTMFRGHAL 65

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
           +     AL L+  M    + P+ +T   + K   + K    G  IHG  +K+G+ +D+ +
Sbjct: 66  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 125

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
             SL+SMYV+ G+  +   +FD+   R+V S+   I+G+AS G    +  ++++FD++  
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKG---YIASAQKMFDEIPI 182

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           ++V +W AMI+GY + G+  EAL LF EM +K  + P++ ++VSV+  C+    +  G+Q
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEM-MKTNVRPDESTMVSVVSACAQSASIELGRQ 241

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +H +        ++ + NALID+Y KCG ++ A  +FE  S+ KD I+W++++ GY    
Sbjct: 242 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSY-KDVISWNTLIGGYTHMN 300

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              EA+LL+ +M+  G  P+ +T++ +L AC   G I  G  I+  V    R+K      
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIH--VYINKRLKGVANAS 358

Query: 399 A---CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG--NSEMQDLAYKSL 453
           +    ++DM  + G ++ A     ++ +  S S W A++    MHG  N+     +    
Sbjct: 359 SHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK 417

Query: 454 IQLEPEN 460
            ++EP++
Sbjct: 418 NEIEPDD 424



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 133/326 (40%), Gaps = 46/326 (14%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            +T+   +   A   S++L +Q HS I   G  SN  +   LI  Y  CG+   +  +F 
Sbjct: 220 ESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFE 279

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            + +KDV  +N+LI GY   + + EAL LF  M  S  SP+D T+ +I      +  + +
Sbjct: 280 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEI 339

Query: 140 GMLIHGLSIK--IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
           G  IH    K   G         SL+ MY KCG       +FD +  R++ SWN      
Sbjct: 340 GRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWN------ 393

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                                       AMI G+  +G  + A  +F  M+ K+ IEP+ 
Sbjct: 394 ----------------------------AMIFGFAMHGRANAAFDIFSRMR-KNEIEPDD 424

Query: 258 VSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           ++ V +L  CS    L  G+ I       + I  +L H       +ID+    G    A 
Sbjct: 425 ITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEH----YGCMIDLLGHSGLFKEAE 480

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHG 338
            +        D + W S++    +HG
Sbjct: 481 EMINTMEMEPDGVIWCSLLKACKMHG 506


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/497 (32%), Positives = 274/497 (55%), Gaps = 38/497 (7%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H+ I+  G  S+PFV   LI+ Y+  G    +  +F+  + KDV  + ++I+G+V+N 
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILA 159
             +EA+  F  M  + V+ ++ T+ ++ K +G+++D+  G  +HGL ++ G V  DV + 
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           +SL+ MY KC  + +                                  +++VFD+M  R
Sbjct: 244 SSLVDMYGKCSCYDD----------------------------------AQKVFDEMPSR 269

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV  WTA+I GYVQ+   D+ +++F EM LK  + PN+ +L SVL  C+ +  L  G+++
Sbjct: 270 NVVTWTALIAGYVQSRCFDKGMLVFEEM-LKSDVAPNEKTLSSVLSACAHVGALHRGRRV 328

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H + I+  +  + +    LID+Y KCG L+ A  VFE     K+  TW+++++G+  HG 
Sbjct: 329 HCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFE-RLHEKNVYTWTAMINGFAAHGY 387

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             +A  L+  M+     P+ +T + VLSAC   GL+ EG  ++ S+   + ++   +  A
Sbjct: 388 ARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYA 447

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VD+ GR G L+ A   I+ MP+EP+  +WGAL  + ++H + E+   A   +I+L+P 
Sbjct: 448 CMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPS 507

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           +   Y  L+NLY+ S+ WD VA +R  MKD+ + KSPG SWI + GK   F   D   P 
Sbjct: 508 HSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPL 567

Query: 520 -SVSIYEMLDDLILIMR 535
            S  +Y+ LD + + MR
Sbjct: 568 ESDDLYKTLDTVGVQMR 584



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
            V A HR     ++ H  ++      N    T LI  Y  CG   ++ LVF  +  K+VY
Sbjct: 318 HVGALHRG----RRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVY 373

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            + ++ING+  +    +A +LF  M  S+VSP++ T   +         +  G  +  LS
Sbjct: 374 TWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLF-LS 432

Query: 148 IKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMPQRNVG-SWNVRISGHASSGDFS 204
           +K  F +++   +   ++ ++ + G   E   L + MP       W           D+ 
Sbjct: 433 MKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYE 492

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           L   +     +++  +   +T + N Y ++ + DE   +  +M+ +  ++    S + V 
Sbjct: 493 LGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELN 289
                 I     K +    + K L+
Sbjct: 553 GKLCEFIAFDDKKPLESDDLYKTLD 577


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 273/489 (55%), Gaps = 41/489 (8%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
            + T L+  YA CG    ++ VF+++  ++   +++LI G+V      +A  LF  M   
Sbjct: 159 LLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQ 218

Query: 116 NV---SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
            +   SP   ++A+  +    +  L +G  +H L  K G   D+   NSL+SMY K G  
Sbjct: 219 GLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 276

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            + + LFD                                  +M  ++  +++A+++GYV
Sbjct: 277 DQAIALFD----------------------------------EMAVKDTVSYSALVSGYV 302

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG  +EA ++F +MQ  + +EP+  ++VS++P CS L  L  G+  HG  I + L  + 
Sbjct: 303 QNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASET 361

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           S+CNALIDMY+KCG +D +R+VF     ++D ++W+++++GYG+HG G EA  L+ +M  
Sbjct: 362 SICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 420

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
           LG  PD +T + +LSAC  SGL+ EG   ++ + + Y + P  E   C+VD+L R G LD
Sbjct: 421 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 480

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A +FI++MP+     +W AL+ A  ++ N ++     + + +L PE   N+V LSN+Y+
Sbjct: 481 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYS 540

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           ++ R+D  AE+R + K +G KKSPGCSWI I+G  H F   D++HP S  IY  LD++++
Sbjct: 541 AAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILV 600

Query: 533 IMRGAAASP 541
            ++     P
Sbjct: 601 GIKKLGYQP 609



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 168/362 (46%), Gaps = 51/362 (14%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    V+P+++T     K    + D + G  IH  +I  G   D+ ++ +L+ MYVKC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             +  ++F  MP R++ +WN                                  AM+ GY
Sbjct: 61  LPDAAHIFATMPARDLVAWN----------------------------------AMLAGY 86

Query: 232 VQNGDLDEALVLFLEMQLK-DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR----- 285
             +G    A+   L MQ++  R+ PN  +LV++LP  +    L+ G  +H + IR     
Sbjct: 87  AHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHP 146

Query: 286 -----KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
                 +L   V L  AL+DMY+KCGSL  ARRVF D+   ++ +TWS+++ G+ L  + 
Sbjct: 147 NRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVF-DAMPARNEVTWSALIGGFVLCSRM 205

Query: 341 HEAVLLYNKMVCLG-SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
            +A LL+  M+  G       +I   L AC     +  G +++ +++    +        
Sbjct: 206 TQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH-ALLAKSGVHADLTAGN 264

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL--IQLE 457
            ++ M  +AG +D+A+     M V+ + S + ALVS  V +G +E   L +K +    +E
Sbjct: 265 SLLSMYAKAGLIDQAIALFDEMAVKDTVS-YSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 458 PE 459
           P+
Sbjct: 324 PD 325



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 44/310 (14%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A+   L++ +Q H+ +   G  ++      L++ YA  G   Q+  +F+ +  KD 
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             Y++L++GYV+N    EA  +F  M   NV PD  T+ ++      +  L  G   HG 
Sbjct: 292 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 351

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            I  G   +  + N+L+ MY KCG+      +F+ MP R++ SWN               
Sbjct: 352 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT-------------- 397

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                               MI GY  +G   EA  LFLEM       P+ V+ + +L  
Sbjct: 398 --------------------MIAGYGIHGLGKEATALFLEMN-NLGFPPDGVTFICLLSA 436

Query: 267 CSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           CS    +  GK       HG+ +   + H +     ++D+ S+ G LD A    +     
Sbjct: 437 CSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI----CMVDLLSRGGFLDEAYEFIQSMPLR 492

Query: 322 KDAITWSSIV 331
            D   W +++
Sbjct: 493 ADVRVWVALL 502



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 104/269 (38%), Gaps = 17/269 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           +AT+   +   +   +L+  + SH  ++  G  S   +   LI  YA CG+   S+ VFN
Sbjct: 326 AATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFN 385

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLN 138
            +  +D+  +N++I GY  +    EA  LF  M      PD  T +  +S  S     + 
Sbjct: 386 MMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIE 445

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGH 197
                H +    G    +     ++ +  + G   E       MP R +V  W   +   
Sbjct: 446 GKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGAC 505

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
               +  L  +  R+  ++       +  + N Y   G  DEA     E+++  +++  K
Sbjct: 506 RVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEA----AEVRIIQKVQGFK 561

Query: 258 VSLVSVLPTCS------SLIGLSGGKQIH 280
            S     P CS      SL    GG Q H
Sbjct: 562 KS-----PGCSWIEINGSLHAFVGGDQSH 585


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 163/514 (31%), Positives = 276/514 (53%), Gaps = 44/514 (8%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ+H Q L  G  S+ FVS+ LI  Y+ CG+ + ++++F+ I  +++  + SLI GYV+N
Sbjct: 102 KQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQN 161

Query: 100 HGHNEALELFSNMYYSN---------VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
              +EAL +F    +            S D   + ++      + +  V   +HG++IK+
Sbjct: 162 DDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKV 221

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G    + + N+L+  Y KCG+ S                                   SR
Sbjct: 222 GLDKVMGVENTLLDAYAKCGEVS----------------------------------LSR 247

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           +VFD M  ++V +W +MI  Y QNG   +A  +F  M      + N+V+L ++L  C+  
Sbjct: 248 KVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHE 307

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G  +H   I+    ++V +  ++IDMY KCG  + AR  F D    K+  +W+++
Sbjct: 308 GALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAF-DGMKEKNVRSWTAM 366

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++GYG+HG   EA+ ++ +M+  G KP+ IT + VL+AC  +G + EG   +N++ + Y 
Sbjct: 367 IAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYN 426

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           ++P  E   C+VD+LGRAG +  A + IK+M V     +WG+L++A  +H + E+ +++ 
Sbjct: 427 VEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISA 486

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + L +L+P N   YV L+N+YA + RW  V  +R ++KDRGL K PG S + + G+ H F
Sbjct: 487 RELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVF 546

Query: 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
            V DK HP    IY+ L++L + ++ A   P++ 
Sbjct: 547 LVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMA 580



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 204/415 (49%), Gaps = 55/415 (13%)

Query: 72  TQSQLVFNS-IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
           T    +FN      DVY +NSLI    +     E+L  FS M   ++ P+  T     K 
Sbjct: 32  TNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKS 91

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
              + DLN G   H  ++  GF  D+ ++++L+ MY KCGK S    LFDE+P+RN+ +W
Sbjct: 92  CSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTW 151

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
                                             T++I GYVQN D  EAL++F E  L 
Sbjct: 152 ----------------------------------TSLITGYVQNDDAHEALMVFKEF-LF 176

Query: 251 DRIEPN---------KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
           ++ E N          V+++SVL  CS +   +  + +HG AI+  L+  + + N L+D 
Sbjct: 177 EKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDA 236

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV-CLGSKPDII 360
           Y+KCG +  +R+VF+D +  KD ++W+S+++ Y  +G   +A  +++ M+   G K + +
Sbjct: 237 YAKCGEVSLSRKVFDDMA-EKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEV 295

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T+  +L AC   G +  G+ +++ VI    +     +   ++DM  + GQ + A +    
Sbjct: 296 TLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVI-MATSIIDMYCKCGQAEMARNAFDG 354

Query: 421 MPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQ-LEPENPSNYVSLSNLYAS 473
           M  E +   W A+++   MHG + E  D+ Y+ +   ++P    NY++  ++ A+
Sbjct: 355 MK-EKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKP----NYITFISVLAA 404



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 105/187 (56%), Gaps = 14/187 (7%)

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
            S  A++ + +L     + FD   R +VY+W ++I    + GD  E+L  F  M+  D I
Sbjct: 23  FSTTAAATNTNLTTLFNKYFD---RTDVYSWNSLIAELARGGDSCESLRAFSWMRKLD-I 78

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           +PN+ +    + +CS+L  L+ GKQ H  A+      D+ + +ALIDMYSKCG L  AR 
Sbjct: 79  KPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARV 138

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC---------LGSKPDIITIVG 364
           +F++    ++ +TW+S+++GY  +   HEA++++ + +          +G+  D + ++ 
Sbjct: 139 LFDEIP-RRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMIS 197

Query: 365 VLSACGR 371
           VLSAC R
Sbjct: 198 VLSACSR 204



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 6/251 (2%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            Y   T+   L   A   +L++    H Q++ +G+++N  ++T +I  Y  CGQ   ++ 
Sbjct: 291 KYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARN 350

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
            F+ ++ K+V  + ++I GY  +    EAL++F  M ++ V P+  T  ++         
Sbjct: 351 AFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGF 410

Query: 137 LNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRI 194
           L  G    + +S +      V     ++ +  + G   E  NL   M  +R+   W   +
Sbjct: 411 LEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLL 470

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-- 252
           +      D  L   S R   ++   N   +  + N Y   G   +  V  + + +KDR  
Sbjct: 471 AACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKD--VERMRILVKDRGL 528

Query: 253 IEPNKVSLVSV 263
           ++P   SLV +
Sbjct: 529 VKPPGYSLVEL 539


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/490 (34%), Positives = 267/490 (54%), Gaps = 37/490 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQSH++IL  G   + F ++ L+   AL   G    +  +F  +     + +N+++ G+V
Sbjct: 5   KQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHV 64

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
           K+    EAL  +  M    V PD+FT  T+ K    +  +  GM +H   +K+G   DV 
Sbjct: 65  KDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVF 124

Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           + NSL+SMY KCG+   C                                    VF+QM 
Sbjct: 125 VQNSLISMYGKCGEIGVCCA----------------------------------VFEQMN 150

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            R+V +W+A+I  +   G   + L L  +M  +      +  LVSVL  C+ L  L  G+
Sbjct: 151 ERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGR 210

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            +HGF +R     +V +  +LI+MY KCG L     +F+  +  K+ +++S ++SG  +H
Sbjct: 211 SVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMA-KKNKLSYSVMISGLAMH 269

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G G E + ++ +M+  G +PD I  VGVL+AC  +GL+ EGL+ +N +   + I+PT + 
Sbjct: 270 GYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQH 329

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             C+VD++GRAG++D AL+ IK+MP+EP+  +W +L+SAS +H N +  ++A K L +L+
Sbjct: 330 YGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLD 389

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
            +  S+YV LSN+YA ++RW+ VA  RT M  +GL + PG S + +  K H F   D  H
Sbjct: 390 SQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGH 449

Query: 518 PCSVSIYEML 527
           P S S+YEML
Sbjct: 450 PQSESVYEML 459



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 19/159 (11%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L L +  H  +L      N  V T LI  Y  CG   +   +F  +  K+   Y+ +I+
Sbjct: 205 ALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMIS 264

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATI---SKLSGEIKD----LNVGMLIHGLS 147
           G   +    E L +F+ M    + PDD     +      +G +++     N   L HG+ 
Sbjct: 265 GLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIE 324

Query: 148 IKI---GFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
             I   G +VD++          + GK  E L L   MP
Sbjct: 325 PTIQHYGCMVDLM---------GRAGKIDEALELIKSMP 354


>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
 gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
          Length = 507

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/398 (39%), Positives = 245/398 (61%), Gaps = 7/398 (1%)

Query: 142 LIHGLSIKIGFVV---DVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGH 197
           L H L  K G      D  LA++L++ Y + G  +E   +FDE+P   +  + N  +S +
Sbjct: 102 LAHALLSKSGHAASSGDPYLASALVASYARSGHLAESRRVFDELPPHSDAAARNALLSAY 161

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A  G    V  +  +F  M  RNV +WTAM++GY QNG  +EA+  FLEM     + PN+
Sbjct: 162 ARCGR---VDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNE 218

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           V++ SVLP C+++  L+ G+++  +A  + +  +V + NAL++MY+KCGS+  A  VF  
Sbjct: 219 VTVSSVLPACAAVGALALGRKVERYARGRGMLTNVYVANALVEMYAKCGSIRRAWMVFRG 278

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               +D  +W+S++  + +HG   E + L++K+   G+KPD IT VGV+ AC   GL++E
Sbjct: 279 IGKQRDLCSWNSMIMAFAVHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTHGGLVDE 338

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G  ++NS+   + +KP  E   C+VD+LGRAG L  A   I +MP+EP   IWGAL+ A 
Sbjct: 339 GKLLFNSMREEFGLKPRIEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGALLGAC 398

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
             HGN E+ ++A + L++LEP+N +N V LSN+YAS  +WD VA++  ++K++  KKS G
Sbjct: 399 SFHGNLELAEVAVEKLMRLEPQNTANLVILSNIYASHGKWDGVAQVWKLLKEKDHKKSAG 458

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            S+I + G+ H F V DK+HP    +Y+ LD + LIM+
Sbjct: 459 YSFIELDGRMHKFLVEDKSHPIYEMVYDTLDSITLIMK 496



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 136/304 (44%), Gaps = 38/304 (12%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           S+      L++AYA CG+   ++ +F  +  ++V  + ++++GY +N  H EA+  F  M
Sbjct: 149 SDAAARNALLSAYARCGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEM 208

Query: 113 YYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           +    V P++ T++++      +  L +G  +   +   G + +V +AN+L+ MY KCG 
Sbjct: 209 WEGCGVRPNEVTVSSVLPACAAVGALALGRKVERYARGRGMLTNVYVANALVEMYAKCGS 268

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                 +F     R +G                            K+R++ +W +MI  +
Sbjct: 269 IRRAWMVF-----RGIG----------------------------KQRDLCSWNSMIMAF 295

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE--LN 289
             +G   E L LF ++++    +P+ ++ V V+  C+    +  GK +   ++R+E  L 
Sbjct: 296 AVHGLWREVLGLFHKLRMTG-AKPDGITFVGVILACTHGGLVDEGKLLFN-SMREEFGLK 353

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
             +     ++D+  + G L  A  +        DA+ W +++     HG    A +   K
Sbjct: 354 PRIEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGALLGACSFHGNLELAEVAVEK 413

Query: 350 MVCL 353
           ++ L
Sbjct: 414 LMRL 417



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/246 (19%), Positives = 100/246 (40%), Gaps = 5/246 (2%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A   +L L ++        G ++N +V+  L+  YA CG   ++ +VF  I
Sbjct: 220 TVSSVLPACAAVGALALGRKVERYARGRGMLTNVYVANALVEMYAKCGSIRRAWMVFRGI 279

Query: 82  -QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI--SKLSGEIKDLN 138
            + +D+  +NS+I  +  +    E L LF  +  +   PD  T   +  +   G + D  
Sbjct: 280 GKQRDLCSWNSMIMAFAVHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTHGGLVD-E 338

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGH 197
             +L + +  + G    +     ++ +  + G   E  +L   MP + +   W   +   
Sbjct: 339 GKLLFNSMREEFGLKPRIEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGALLGAC 398

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           +  G+  L   +     +++ +N      + N Y  +G  D    ++  ++ KD  +   
Sbjct: 399 SFHGNLELAEVAVEKLMRLEPQNTANLVILSNIYASHGKWDGVAQVWKLLKEKDHKKSAG 458

Query: 258 VSLVSV 263
            S + +
Sbjct: 459 YSFIEL 464


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 174/539 (32%), Positives = 288/539 (53%), Gaps = 42/539 (7%)

Query: 10  FALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCG 69
           + L    N T  T +  +  +A   SL      H  ++  G   +PF++TKLI  ++   
Sbjct: 59  YLLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELD 118

Query: 70  QPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK 129
               ++ VF+  + + +Y++N+L          N+ LEL+  M    VS D FT   + K
Sbjct: 119 TVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLK 178

Query: 130 --LSGE--IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
             ++ E  +  L  G  IH   ++ G+   V +  +LM MY + G    C++        
Sbjct: 179 ACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFG----CVS-------- 226

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
                      +AS+           VFD+M  +NV +W+AMI  Y +NG   EAL LF 
Sbjct: 227 -----------YASA-----------VFDEMPVKNVVSWSAMIACYAKNGKPYEALELFR 264

Query: 246 EMQLK--DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           EM L   D + PN V++VSVL  C++   L  GK IH + +R+ L+  + + +ALI MY+
Sbjct: 265 EMMLNTHDSV-PNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYA 323

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           +CG L+  + +F D    KD + W+S++S YGLHG G +A+ ++ +M+  G  P  I+ +
Sbjct: 324 RCGKLESGQLIF-DRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFI 382

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            VL AC  +GL+ EG +++ S++  + I+P+ E  AC+VD+LGRA +LD A   I+ + +
Sbjct: 383 SVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRI 442

Query: 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483
           EP P +WG+L+ A  +H + E+ + A K L +LEP N  NYV L+++YA +  WD V  +
Sbjct: 443 EPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRV 502

Query: 484 RTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           + ++  R L+K PG SWI +  K + F+  D+ +P    ++ +L +L   M+    +P 
Sbjct: 503 KKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQ 561


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 177/526 (33%), Positives = 274/526 (52%), Gaps = 42/526 (7%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           +    Y  A+V   +   A+ + L   KQ H Q L  G  S  FVS  LIT Y  CG+ +
Sbjct: 97  IVPNEYVYASV---ISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCS 153

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            + L +N     +   YN+LI G+V+N   ++  E+   MY     PD FT   +     
Sbjct: 154 DALLAYNEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCN 213

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
              DL  G L+H  +IK+       + N +++MY K       LNL +E           
Sbjct: 214 SRDDLKRGELLHCQTIKLKLNSTAFIGNLIITMYSK-------LNLLEE----------- 255

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                           + + F  ++ +++ +W   I+      D ++AL  F EM  + R
Sbjct: 256 ----------------AEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECR 299

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           + P++ +  S L  CS L  +  GKQIHG  IR  L  DV   NALI+MY+KCG +  A 
Sbjct: 300 VRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAY 359

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
            +F     +++ ++W+++++G+G HG G +A  L+ KM  +G KPD +T VG+L+A   +
Sbjct: 360 YIFSKME-HQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHA 418

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           GL++EGL  +NS+  TY I P  E  +C++D+LGRAG+L+ A +++K  P      + G+
Sbjct: 419 GLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLGS 478

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
           L+SA  +HG+ +      + L++L+P   S YV LSNLYAS   WD VAE   ++K  GL
Sbjct: 479 LLSACRLHGDVDTGKCFARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWKLLKGSGL 538

Query: 493 KKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
           KK PG S I ++G    F+V D +H    S  E + D++ I+R AA
Sbjct: 539 KKEPGHSLIEVNGTFEKFTVVDFSH----SRIEEIMDMLKILRWAA 580



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 156/343 (45%), Gaps = 43/343 (12%)

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
           + K L  G+ +H ++IK     DVI++N ++++Y KC K  E                  
Sbjct: 15  KTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLRE------------------ 56

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                           +R+VFD+M  RN+ +W+AMI+GY Q G+   AL LF ++     
Sbjct: 57  ----------------ARQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSKLN---- 96

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           I PN+    SV+  C+SL GL  GKQIHG A++  L+    + NALI MY KCG    A 
Sbjct: 97  IVPNEYVYASVISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDAL 156

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
             + + +   + + ++++++G+  + +  +   +   M   G  PD  T VG+L  C   
Sbjct: 157 LAY-NEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSR 215

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
             +  G  ++   I   ++  T  I   ++ M  +   L+ A    +++  E     W  
Sbjct: 216 DDLKRGELLHCQTIK-LKLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIE-EKDLISWNT 273

Query: 433 LVSASVMHGNSEMQDL-AYKSLIQLEPENPSNYVSLSNLYASS 474
            +S S  H N   + L A+K ++      P  +   S L A S
Sbjct: 274 FIS-SCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACS 315



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 90/177 (50%), Gaps = 6/177 (3%)

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S++  CS    L  G  +H  AI+     DV + N ++++Y+KC  L  AR+VF++ S  
Sbjct: 8   SLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMS-E 66

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           ++ ++WS+++SGY   G+   A+ L++K   L   P+      V+SAC     + +G +I
Sbjct: 67  RNLVSWSAMISGYEQIGEPISALGLFSK---LNIVPNEYVYASVISACASLKGLVQGKQI 123

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           +   +  + +   + +   ++ M  + G+   AL       +E +P  + AL++  V
Sbjct: 124 HGQALK-FGLDSVSFVSNALITMYMKCGKCSDAL-LAYNEALELNPVAYNALITGFV 178


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 172/519 (33%), Positives = 286/519 (55%), Gaps = 34/519 (6%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           F    +++ YA  G     +++F+++  +D   YN++I+G+  N     AL +F  M   
Sbjct: 90  FSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKE 149

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
            + P ++T  ++     ++ DL  G  IHG  I      +V + N+L  +Y +CG+  + 
Sbjct: 150 GLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQA 209

Query: 176 LNLFDEMPQRNVGSWNVRISGH---------------------------ASS--GDF--- 203
             LFD M  RNV +WN+ ISG+                           ASS  G +   
Sbjct: 210 RRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQA 269

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
             +  +R+VF +++ ++   WT MI G  QNG  ++AL+LF EM L++   P+  ++ SV
Sbjct: 270 GYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLEN-ARPDGYTISSV 328

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           + +C+ L  L  G+ +HG A    +N D+ + +AL+DMY KCG    A  +F      ++
Sbjct: 329 VSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQ-TRN 387

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            ++W+S++ GY L+G+  EA+ LY  M+    KPD +T VGVLSAC  +GL+ EG E + 
Sbjct: 388 VVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFC 447

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           S+ + + ++PT +  AC+V++ GR+G +D+A+D I +M  EP+  IW  ++S  VM G+ 
Sbjct: 448 SMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDI 507

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           +  ++A + LI+L P N   Y+ LSN+YA+  RW  VA +R++MK + +KK    SWI I
Sbjct: 508 KHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEI 567

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
             + H F   D+ HP +  I+  L+ LI  ++ A  SP+
Sbjct: 568 DNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGFSPN 606



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/295 (34%), Positives = 161/295 (54%), Gaps = 18/295 (6%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D  + N L+++Y K G+ S    LFDEM QR+  SWN  +S +A SG   LV   R +FD
Sbjct: 57  DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSG---LVEDLRVIFD 113

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            M  R+  ++  +I+G+  NG    AL +FL MQ K+ ++P + + VSVL  C+ L+ L 
Sbjct: 114 NMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQ-KEGLKPTEYTHVSVLNACTQLLDLR 172

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GKQIHG  I   L  +V +CNAL D+Y++CG +D ARR+F D    ++ +TW+ ++SGY
Sbjct: 173 RGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLF-DRMVIRNVVTWNLMISGY 231

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             + +  + + L+++M     KPD +T   VL A  ++G I+E  +++  +     +  T
Sbjct: 232 LKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWT 291

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVE---PSPSIWGALVS-----ASVMHG 441
             I  C      + G+ + AL     M +E   P      ++VS     AS+ HG
Sbjct: 292 IMIVGC-----AQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHG 341



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 147/370 (39%), Gaps = 114/370 (30%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L+  KQ H +I+      N FV   L   YA CG+  Q++ +F+ +  ++V  +N +I+G
Sbjct: 171 LRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATI-------------SKLSGEIKDLN---- 138
           Y+KN    + ++LF  M  SN+ PD  T +++              K+ GEI++ +    
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCW 290

Query: 139 --------------------------------------------VGMLIHGLSIK----- 149
                                                       +  L HG  +      
Sbjct: 291 TIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFL 350

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           +G   D++++++L+ MY KCG   +   +F  M  RNV SWN                  
Sbjct: 351 MGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWN------------------ 392

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
                           +MI GY  NG   EAL L+ E  L++ ++P+ V+ V VL  C  
Sbjct: 393 ----------------SMIGGYALNGQDLEALSLY-ENMLEENLKPDSVTFVGVLSACVH 435

Query: 270 LIGLSGGKQI-------HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
              +  GK+        HG     E   D   C  +++++ + G +D A  +    S   
Sbjct: 436 AGLVEEGKEYFCSMSDQHGL----EPTPDHYAC--MVNLFGRSGHMDKAVDLISSMSQEP 489

Query: 323 DAITWSSIVS 332
           +++ W++++S
Sbjct: 490 NSLIWTTVLS 499



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 12/200 (6%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H +   +G   +  VS+ L+  Y  CG    +  +F+++Q ++V  +NS+I GY  N   
Sbjct: 345 HGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQD 404

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG------LSIKIGFVVDV 156
            EAL L+ NM   N+ PD  T   +  LS  +   + G++  G      +S + G     
Sbjct: 405 LEALSLYENMLEENLKPDSVTFVGV--LSACV---HAGLVEEGKEYFCSMSDQHGLEPTP 459

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
                +++++ + G   + ++L   M Q  N   W   +S     GD      + R   +
Sbjct: 460 DHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIE 519

Query: 216 MKRRNVYAWTAMINGYVQNG 235
           +   N   +  + N Y   G
Sbjct: 520 LNPFNAVPYIMLSNMYAARG 539


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/452 (34%), Positives = 252/452 (55%), Gaps = 36/452 (7%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ +  +DV  +N+L+ G  +   H+EAL     M      PD FTL+T+  +  E  D
Sbjct: 126 VFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECAD 185

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           +  G+ +HG + + GF  DV + +SL+ MY  C +                         
Sbjct: 186 VKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTR------------------------- 220

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                D+S+     +VFD +  R+   W +++ G  QNG ++EAL +F  M L+  + P 
Sbjct: 221 ----TDYSV-----KVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRM-LQAGVRPV 270

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            V+  S++P C +L  L  GKQ+H + I      +V + ++LIDMY KCG +  A  +F+
Sbjct: 271 PVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFD 330

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
             S + D ++W++++ GY LHG   EA++L+ +M    +KP+ IT + VL+AC  +GL++
Sbjct: 331 KMS-SPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVD 389

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +G + + S+ N Y I PT E  A + D LGRAG+LD A +FI  M ++P+ S+W  L+ A
Sbjct: 390 KGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRA 449

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +H N+ + +   K +++LEP +  ++V LSN+Y++S RW+  A LR  M+ +G+KK P
Sbjct: 450 CRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDP 509

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
            CSWI +  K H F   D++HP    I + L+
Sbjct: 510 ACSWIEVKSKLHVFVAHDRSHPWYDRIIDALN 541



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 162/337 (48%), Gaps = 22/337 (6%)

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG-H 197
           +G  +H L+I+ G   D   AN+L+++Y K             +P   + S  V I    
Sbjct: 68  LGASLHALAIRSGAFADRFTANALLNLYCK-------------VPCSYLDSTGVAIVDVP 114

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
            SS  F  V   R+VFD+M  R+V +W  ++ G  + G   EAL  F+    ++   P+ 
Sbjct: 115 GSSTAFESV---RKVFDEMIERDVVSWNTLVLGCAEEGRHHEALG-FVRKMCREGFRPDS 170

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            +L +VLP  +    +  G ++HGFA R   + DV + ++LIDMY+ C   D + +VF++
Sbjct: 171 FTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDN 230

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               +D I W+S+++G   +G   EA+ ++ +M+  G +P  +T   ++  CG    +  
Sbjct: 231 LPV-RDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRF 289

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G +++  VI     +    I + ++DM  + G++  A      M   P    W A++   
Sbjct: 290 GKQLHAYVI-CGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMS-SPDVVSWTAMIMGY 347

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            +HG +  + L     ++L    P++   L+ L A S
Sbjct: 348 ALHGPAR-EALVLFERMELGNAKPNHITFLAVLTACS 383



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 139/323 (43%), Gaps = 44/323 (13%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L + A    +K   + H      G  S+ FV + LI  YA C +   S  VF+
Sbjct: 170 SFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFD 229

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           ++  +D  L+NSL+ G  +N    EAL +F  M  + V P   T +++  + G +  L  
Sbjct: 230 NLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRF 289

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +H   I  GF  +V +++SL+ MY KCG+ S    +FD+M   +V SW         
Sbjct: 290 GKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSW--------- 340

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                    TAMI GY  +G   EALVLF  M+L +  +PN ++
Sbjct: 341 -------------------------TAMIMGYALHGPAREALVLFERMELGN-AKPNHIT 374

Query: 260 LVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
            ++VL  CS    +  G +      + + I   L H      AL D   + G LD A   
Sbjct: 375 FLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFA----ALADTLGRAGELDEAYNF 430

Query: 315 FEDSSFNKDAITWSSIVSGYGLH 337
                    A  WS+++    +H
Sbjct: 431 ISKMQIKPTASVWSTLLRACRVH 453



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 25/253 (9%)

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN-KVSLVSVLPTCSSLIGLSG-GKQIHG 281
           W   I      G   +A+ LFL M+       +   SL + L +C++L GLS  G  +H 
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAAL-GLSALGASLHA 74

Query: 282 FAIRKELNHDVSLCNALIDMYSK--CGSLDCA-----------------RRVFEDSSFNK 322
            AIR     D    NAL+++Y K  C  LD                   R+VF D    +
Sbjct: 75  LAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVF-DEMIER 133

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D ++W+++V G    G+ HEA+    KM   G +PD  T+  VL        +  GLE++
Sbjct: 134 DVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVH 193

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
                         + + ++DM     + D ++     +PV     +W +L++    +G+
Sbjct: 194 GFAFRN-GFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDH-ILWNSLLAGCAQNGS 251

Query: 443 SEMQDLAYKSLIQ 455
            E     ++ ++Q
Sbjct: 252 VEEALGIFRRMLQ 264


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 183/508 (36%), Positives = 282/508 (55%), Gaps = 14/508 (2%)

Query: 29  VSATHRSLKLTKQS---HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           +S  H++ K  K     H   +      +PFV+ +L+  Y        +  +F   Q+ +
Sbjct: 30  ISLLHKNRKNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPN 89

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           VYLY SLI+G+V    + +A+ LF  M   +V  D++ +  + K     + L  G  +HG
Sbjct: 90  VYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHG 149

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
           L +K G  +D  +A  L+ +Y KCG   +   +FD MP+R+V +  V I    S  D  +
Sbjct: 150 LVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMI---GSCFDCGM 206

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  +  VF++M  R+   WT +I+G V+NG+ +  L +F EMQ+K  +EPN+V+ V VL 
Sbjct: 207 VEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKG-VEPNEVTFVCVLS 265

Query: 266 TCSSLIGLSGGKQIHGFAIRK---ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            C+ L  L  G+ IH + +RK   E+N  V+   ALI+MYS+CG +D A+ +F D    K
Sbjct: 266 ACAQLGALELGRWIHAY-MRKCGVEVNRFVA--GALINMYSRCGDIDEAQALF-DGVRVK 321

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D  T++S++ G  LHGK  EAV L+++M+    +P+ IT VGVL+AC   GL++ G EI+
Sbjct: 322 DVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIF 381

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            S+   + I+P  E   C+VD+LGR G+L+ A DFI  M VE    +  +L+SA  +H N
Sbjct: 382 ESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKN 441

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
             M +   K L +    +  +++ LSN YAS  RW   AE+R  M+  G+ K PGCS I 
Sbjct: 442 IGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIE 501

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           ++   H F   D  HP    IY+ L++L
Sbjct: 502 VNNAIHEFFSGDLRHPERKRIYKKLEEL 529



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 14/143 (9%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A   +L+L +  H+ +   G   N FV+  LI  Y+ CG   ++Q +F+ ++ KDV
Sbjct: 264 LSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDV 323

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI---------SKLSGEIKDL 137
             YNS+I G   +    EA+ELFS M    V P+  T   +           L GEI   
Sbjct: 324 STYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEI--F 381

Query: 138 NVGMLIHGLSIKI---GFVVDVI 157
               +IHG+  ++   G +VD++
Sbjct: 382 ESMEMIHGIEPEVEHYGCMVDIL 404


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/476 (34%), Positives = 267/476 (56%), Gaps = 5/476 (1%)

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           I  +A CG    ++ VF+    +D+  +N LINGY K     +A+ ++  M    V PDD
Sbjct: 198 IHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDD 257

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T+  +      + DLN G   +    + G  + + L N+LM M+ KCG   E   +FD 
Sbjct: 258 VTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDN 317

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           + +R + SW   ISG+A  G   L+  SR++FD M+ ++V  W AMI G VQ     +AL
Sbjct: 318 LEKRTIVSWTTMISGYARCG---LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDAL 374

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            LF EMQ  +  +P++++++  L  CS L  L  G  IH +  +  L+ +V+L  +L+DM
Sbjct: 375 ALFQEMQTSN-TKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDM 433

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y+KCG++  A  VF      ++++T+++I+ G  LHG    A+  +N+M+  G  PD IT
Sbjct: 434 YAKCGNISEALSVFHGIQ-TRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEIT 492

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
            +G+LSAC   G+I  G + ++ + + + + P  +  + +VD+LGRAG L+ A   +++M
Sbjct: 493 FIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESM 552

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
           P+E   ++WGAL+    MHGN E+ + A K L++L+P +   YV L  +Y  +  W+   
Sbjct: 553 PMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAK 612

Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGA 537
             R MM +RG++K PGCS I ++G    F V DK+ P S  IY+ L  L   MR +
Sbjct: 613 RARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMRSS 668



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 203/440 (46%), Gaps = 74/440 (16%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQP--TQSQLVFNSIQHKDVYLYNSLINGYV 97
           KQ  +Q++  G I +PF S++LI   AL        S  +   I++ +++ +N  I G+ 
Sbjct: 70  KQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFS 129

Query: 98  KNHGHNEALELFSNMYYSNV---SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           ++    E+  L+  M         PD FT   + K+  +++  ++G +I G  +K+   +
Sbjct: 130 ESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLEL 189

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
              + N+ + M+  CG       +FDE P R++ SWN                       
Sbjct: 190 VSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWN----------------------- 226

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
                       +INGY + G+ ++A+ ++  M+  + ++P+ V+++ ++ +CS L  L+
Sbjct: 227 -----------CLINGYKKIGEAEKAIYVYKLME-SEGVKPDDVTMIGLVSSCSMLGDLN 274

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK+ + +     L   + L NAL+DM+SKCG +  ARR+F D+   +  ++W++++SGY
Sbjct: 275 RGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF-DNLEKRTIVSWTTMISGY 333

Query: 335 GLHG-------------------------------KGHEAVLLYNKMVCLGSKPDIITIV 363
              G                               +G +A+ L+ +M    +KPD IT++
Sbjct: 334 ARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMI 393

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
             LSAC + G ++ G+ I+   I  Y +     +   +VDM  + G +  AL     +  
Sbjct: 394 HCLSACSQLGALDVGIWIHR-YIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQT 452

Query: 424 EPSPSIWGALVSASVMHGNS 443
             S + + A++    +HG++
Sbjct: 453 RNSLT-YTAIIGGLALHGDA 471



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 38/71 (53%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N  + T L+  YA CG  +++  VF+ IQ ++   Y ++I G   +   + A+  F+ M 
Sbjct: 423 NVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMI 482

Query: 114 YSNVSPDDFTL 124
            + ++PD+ T 
Sbjct: 483 DAGIAPDEITF 493


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/524 (33%), Positives = 268/524 (51%), Gaps = 71/524 (13%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           S+  V   L+  YA C     ++  F  I+  D+  +N+++ GY     H EA+EL S M
Sbjct: 396 SDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEM 455

Query: 113 YYSNVSPD--------------------------------DFTLATIS---KLSGEIKDL 137
            +  + PD                                D    TIS      G++++L
Sbjct: 456 KFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNL 515

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            +G  IHG  ++    +   + ++L+SMY  C       ++F E+  R+V  WN  IS  
Sbjct: 516 KLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISAC 575

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A SG                 R+V                  AL L  EM L + +E N 
Sbjct: 576 AQSG-----------------RSV-----------------NALDLLREMNLSN-VEVNT 600

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           V++VS LP CS L  L  GK+IH F IR  L+    + N+LIDMY +CGS+  +RR+F D
Sbjct: 601 VTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF-D 659

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               +D ++W+ ++S YG+HG G +AV L+ +   +G KP+ IT   +LSAC  SGLI E
Sbjct: 660 LMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEE 719

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G + +  +   Y + P  E  AC+VD+L RAGQ +  L+FI+ MP EP+ ++WG+L+ A 
Sbjct: 720 GWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGAC 779

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
            +H N ++ + A + L +LEP++  NYV ++N+Y+++ RW+  A++R +MK+RG+ K PG
Sbjct: 780 RIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPG 839

Query: 498 CSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           CSWI +  K H F V D +HP    I   ++ L   ++     P
Sbjct: 840 CSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVP 883



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 227/491 (46%), Gaps = 79/491 (16%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           LQ      +L+L  Q H+Q++  G     F+ ++L+  Y   G    ++ +F+ +  ++V
Sbjct: 96  LQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNV 155

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
           + + +++  Y     + E ++LF  M    V PD F    + K   E+K+  VG  ++  
Sbjct: 156 FSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDY 215

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            + IGF  +  +  S++ M++KCG+       F+E+  ++V  WN+ +SG+ S G+F   
Sbjct: 216 MLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK-- 273

Query: 207 VRSRRVFDQMKRRNV----YAWTAMINGYVQNGDLDEALVLFLEM-QLKD---------- 251
            ++ +    MK   V      W A+I+GY Q+G  +EA   FLEM  LKD          
Sbjct: 274 -KALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTA 332

Query: 252 ------------------------RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-K 286
                                    ++PN +++ S +  C++L  L  G++IHG+ I+ +
Sbjct: 333 LIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVE 392

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVF------------------------EDS---- 318
           EL+ D+ + N+L+D Y+KC S++ ARR F                        E++    
Sbjct: 393 ELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELL 452

Query: 319 ------SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
                     D ITW+ +V+G+  +G G  A+  + +M  +G  P+  TI G L+ACG+ 
Sbjct: 453 SEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQV 512

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
             +  G EI+  V+  + I+ +T + + ++ M      L+ A      +       +W +
Sbjct: 513 RNLKLGKEIHGYVLRNH-IELSTGVGSALISMYSGCDSLEVACSVFSELSTR-DVVVWNS 570

Query: 433 LVSASVMHGNS 443
           ++SA    G S
Sbjct: 571 IISACAQSGRS 581



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 181/391 (46%), Gaps = 17/391 (4%)

Query: 61  LITAYALCGQPTQSQLVFNSIQ-----HKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           +I+ YA  GQ  ++   F  +        +V  + +LI G  +N    EAL +F  M   
Sbjct: 297 IISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSE 174
            V P+  T+A+       +  L  G  IHG  IK+  +  D+++ NSL+  Y KC     
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWTAMING 230
               F  + Q ++ SWN  ++G+A  G     +    +  +MK +    ++  W  ++ G
Sbjct: 417 ARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIE---LLSEMKFQGIEPDIITWNGLVTG 473

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           + Q GD   AL  F  M     ++PN  ++   L  C  +  L  GK+IHG+ +R  +  
Sbjct: 474 FTQYGDGKAALEFFQRMHSMG-MDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIEL 532

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
              + +ALI MYS C SL+ A  VF + S  +D + W+SI+S     G+   A+ L  +M
Sbjct: 533 STGVGSALISMYSGCDSLEVACSVFSELS-TRDVVVWNSIISACAQSGRSVNALDLLREM 591

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
                + + +T+V  L AC +   + +G EI+  +I    +     I   ++DM GR G 
Sbjct: 592 NLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRC-GLDTCNFILNSLIDMYGRCGS 650

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + ++      MP     S W  ++S   MHG
Sbjct: 651 IQKSRRIFDLMPQRDLVS-WNVMISVYGMHG 680



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 140/329 (42%), Gaps = 40/329 (12%)

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFT--LATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           +N   N A  L S+M  +N  PD+     A+I +   ++ +L +G  +H   +  G  V 
Sbjct: 66  RNGVLNNAAMLLSSMDLTN--PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVC 123

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             L + L+ +Y + G   +   +FD+M +RNV SW                         
Sbjct: 124 EFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSW------------------------- 158

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                    TA++  Y   GD +E + LF  M + + + P+      V   CS L     
Sbjct: 159 ---------TAIMEMYCGLGDYEETIKLFYLM-VNEGVRPDHFVFPKVFKACSELKNYRV 208

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK ++ + +      +  +  +++DM+ KCG +D ARR FE+  F KD   W+ +VSGY 
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF-KDVFMWNIMVSGYT 267

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
             G+  +A+   + M   G KPD +T   ++S   +SG   E  + +  +      KP  
Sbjct: 268 SKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNV 327

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVE 424
                ++    + G    AL   + M +E
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLE 356



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 134/320 (41%), Gaps = 38/320 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVF 78
           + T+   L      R+LKL K+ H  +L   HI  +  V + LI+ Y+ C     +  VF
Sbjct: 499 TTTISGALAACGQVRNLKLGKEIHGYVLR-NHIELSTGVGSALISMYSGCDSLEVACSVF 557

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  +DV ++NS+I+   ++     AL+L   M  SNV  +  T+ +      ++  L 
Sbjct: 558 SELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR 617

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  IH   I+ G      + NSL+ MY +CG   +   +FD MPQR++ SWNV IS + 
Sbjct: 618 QGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYG 677

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
             G     + +  +F Q                            F  M LK    PN +
Sbjct: 678 MHG---FGMDAVNLFQQ----------------------------FRTMGLK----PNHI 702

Query: 259 SLVSVLPTCS-SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           +  ++L  CS S +   G K          ++  V     ++D+ S+ G  +      E 
Sbjct: 703 TFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEK 762

Query: 318 SSFNKDAITWSSIVSGYGLH 337
             F  +A  W S++    +H
Sbjct: 763 MPFEPNAAVWGSLLGACRIH 782



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 123/293 (41%), Gaps = 42/293 (14%)

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           +NG L+ A +L   M L +  E  ++   S+L  C  L  L  G Q+H   +   ++   
Sbjct: 66  RNGVLNNAAMLLSSMDLTNPDECIEI-YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCE 124

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            L + L+++Y + G ++ ARR+F+  S  ++  +W++I+  Y   G   E + L+  MV 
Sbjct: 125 FLGSRLLEVYCQTGCVEDARRMFDKMS-ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN 183

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G +PD      V  AC        G ++Y+ ++ +   +  + +   ++DM  + G++D
Sbjct: 184 EGVRPDHFVFPKVFKACSELKNYRVGKDVYDYML-SIGFEGNSCVKGSILDMFIKCGRMD 242

Query: 413 RALDFIKTMP----------------------------------VEPSPSIWGALVSASV 438
            A  F + +                                   V+P    W A++S   
Sbjct: 243 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYA 302

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR----WDAVAELRTMM 487
             G  E     +  +  L+   P N VS + L A S +    ++A++  R M+
Sbjct: 303 QSGQFEEASKYFLEMGGLKDFKP-NVVSWTALIAGSEQNGYDFEALSVFRKMV 354



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 106/264 (40%), Gaps = 9/264 (3%)

Query: 8   NTFALVTSRNYTSATVQHFLQVSATHRSLKLT-----KQSHSQILSLGHISNPFVSTKLI 62
           N   L+   N ++  V     VSA     KL      K+ H  I+  G  +  F+   LI
Sbjct: 583 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLI 642

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
             Y  CG   +S+ +F+ +  +D+  +N +I+ Y  +    +A+ LF       + P+  
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHI 702

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFD 180
           T   +         +  G     + +K  + +D  +     ++ +  + G+F+E L   +
Sbjct: 703 TFTNLLSACSHSGLIEEGWKYFKM-MKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIE 761

Query: 181 EMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           +MP + N   W   +       +  L   + R   +++ ++   +  M N Y   G  ++
Sbjct: 762 KMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWED 821

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSV 263
           A  +   M+ +   +P   S + V
Sbjct: 822 AAKIRCLMKERGVTKPPGCSWIEV 845


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/491 (34%), Positives = 273/491 (55%), Gaps = 36/491 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K+ H  +L LG   + FV+  L+  Y+  G    ++ +F+ +  +D   +N++I+GY +N
Sbjct: 14  KKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQN 73

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               EAL++   M    V  D  T+A++  +  ++ D+  G LIH   IK G   ++ ++
Sbjct: 74  GNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVS 133

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+L++MY K G                         GHA    F L+++           
Sbjct: 134 NALINMYAKFGSL-----------------------GHAQK-VFGLLIK----------- 158

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           +V +W  +I GY QNG   EA+ ++L M+  + I PN+ + VS+LP  S +  L  G +I
Sbjct: 159 DVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRI 218

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           HG  I+  L  DV +   LIDMY KCG LD A  +F      K+++ W++++S YG+HG 
Sbjct: 219 HGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVP-RKNSVPWNAMISCYGVHGD 277

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           G +A+ L+ +M     KPD IT V +LSAC  SGL+++    +N +   Y IKP+ +   
Sbjct: 278 GEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYG 337

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VD+ GRAG+L+ A +FIK MP++P  S WGAL++A  +HGN E+   A + L +++ E
Sbjct: 338 CMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSE 397

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           N   YV LSN+YA+  +W+ V ++R++ +DRGL+K+PG S I ++ K   F   ++ HP 
Sbjct: 398 NVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPK 457

Query: 520 SVSIYEMLDDL 530
              IY  L DL
Sbjct: 458 CEEIYRELRDL 468



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 13/156 (8%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           V+  C  L+    GK+IH   ++     DV +  +L+ MYS+ G +  AR++F+D    +
Sbjct: 3   VVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMP-AR 58

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D  +W++++SGY  +G   EA+ + ++M   G K D IT+  VL  C + G I  G    
Sbjct: 59  DRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSG---- 114

Query: 383 NSVINTYRIKPTTE----ICACVVDMLGRAGQLDRA 414
             +I+ Y IK   E    +   +++M  + G L  A
Sbjct: 115 -KLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHA 149


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/512 (33%), Positives = 277/512 (54%), Gaps = 35/512 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A  R+L   ++ H+  L  G      VST ++ AY  CG    ++ VF+
Sbjct: 119 SVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFD 178

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  ++   +N++I+GY  N    EA+ LF  M    V   D ++    +  GE+  L+ 
Sbjct: 179 CMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE 238

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              +H L +++G   +V + N+L++ Y KC +      +F+E+     G+   RIS    
Sbjct: 239 VRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNEL-----GNKKTRIS---- 289

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                   W AMI G+ QN   ++A  LF  MQL++ + P+  +
Sbjct: 290 ------------------------WNAMILGFTQNECPEDAERLFARMQLEN-VRPDSFT 324

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           LVSV+P  + +      + IHG++IR +L+ DV +  ALIDMYSKCG +  ARR+F DS+
Sbjct: 325 LVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLF-DSA 383

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            ++  ITW++++ GYG HG G  AV L+ +M   GS P+  T + VL+AC  +GL++EG 
Sbjct: 384 RDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQ 443

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           + + S+   Y ++P  E    +VD+LGRAG+LD A  FIK MP+EP  S++GA++ A  +
Sbjct: 444 KYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKL 503

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H N E+ + + + + +L PE    +V L+N+YA++  W  VA +RT M+ +GL+K+PG S
Sbjct: 504 HKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWS 563

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
            I +  + H F      H  +  IY  L  LI
Sbjct: 564 IIQLKNEVHTFYSGSTNHQHAKDIYARLAKLI 595



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 142/300 (47%), Gaps = 51/300 (17%)

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T   + KL     DL  G  +H      G   + I + +L +MY KC + ++        
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPAD-------- 69

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
                                     +RRVFD+M  R+  AW A++ GY +NG    A+ 
Sbjct: 70  --------------------------ARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAME 103

Query: 243 LFLEMQLKDRIE-PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
             + MQ ++  E P+ V+LVSVLP C+    L   +++H FA+R  L+  V++  A++D 
Sbjct: 104 AVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDA 163

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y KCG+++ AR VF D    +++++W++++ GY  +G   EA+ L+ +MV  G      +
Sbjct: 164 YCKCGAVEAARAVF-DCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDAS 222

Query: 362 IVGVLSACGRSGLINE---------------GLEIYNSVINTYRIKPTTEICACVVDMLG 406
           ++  L ACG  G ++E                + + N++I TY      ++ A V + LG
Sbjct: 223 VLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELG 282



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 142/324 (43%), Gaps = 39/324 (12%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           + T A+V   LQ       L   ++ H  ++ +G  SN  V+  LIT YA C +   +  
Sbjct: 217 DVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQ 276

Query: 77  VFNSIQHKDVYL-YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
           VFN + +K   + +N++I G+ +N    +A  LF+ M   NV PD FTL ++     +I 
Sbjct: 277 VFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADIS 336

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           D      IHG SI+     DV +  +L+ MY KCG+ S    LFD    R+V +WN  I 
Sbjct: 337 DPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIH 396

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
           G+ S G           F Q                        A+ LF EM+    + P
Sbjct: 397 GYGSHG-----------FGQA-----------------------AVELFEEMKGTGSL-P 421

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE--LNHDVSLCNALIDMYSKCGSLDCARR 313
           N+ + +SVL  CS   GL    Q +  +++K+  L   +     ++D+  + G LD A  
Sbjct: 422 NETTFLSVLAACSH-AGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWS 480

Query: 314 VFEDSSFNKDAITWSSIVSGYGLH 337
             ++         + +++    LH
Sbjct: 481 FIKNMPIEPGISVYGAMLGACKLH 504



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 7/192 (3%)

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P   +  ++L  C++   L+ G+ +H     + L  +     AL +MY KC     ARRV
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 315 FEDSSFNKDAITWSSIVSGY---GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
           F D   ++D + W+++V+GY   GL     EAV+        G +PD +T+V VL AC  
Sbjct: 74  F-DRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEG-GERPDSVTLVSVLPACAD 131

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           +  ++   E++   +    +     +   V+D   + G ++ A      MPV  S S W 
Sbjct: 132 ARALHACREVHAFALRA-GLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVS-WN 189

Query: 432 ALVSASVMHGNS 443
           A++     +GN+
Sbjct: 190 AMIDGYADNGNA 201


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/496 (31%), Positives = 278/496 (56%), Gaps = 7/496 (1%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           + +A  R     + +H   + +G   + FV T L+ AYA C +  +++ VF+ +  +D+ 
Sbjct: 1   RAAARARWTDTVRGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLV 60

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            +  +++ Y     + E L L + M  S V PD   LAT+    G  + L  G  IH   
Sbjct: 61  AWGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYI 120

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
                 VD  L+++L++MY  C        ++  M ++++ S    + G+A +G   +  
Sbjct: 121 QVSDIFVDARLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEI-- 178

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            +R +F+ M  ++V +W+AMI+ Y +N    E L LF +MQ    + P++++++SV+  C
Sbjct: 179 -ARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQ-GCGVSPDEITMLSVISAC 236

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           +++  L   + IH           +S+CNALIDM+SKCGSL  A  +F ++   K+ ITW
Sbjct: 237 ANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMF-NAMPRKNVITW 295

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +S+++ + +HG G  A+ L+ +M   G +P+ +T + +L AC  +GL+ EG  ++  ++ 
Sbjct: 296 TSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQ 355

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            YRI+P  E   C+VD++GRA  +  A+D I++M + P+ +IWG+L++A  MHG+ E+ +
Sbjct: 356 EYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGE 415

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A K +++L+P +   YV LSN++A S  W+   +LR MMK  G+ K  G SW+ ++   
Sbjct: 416 FAAKKILELDPNHDGAYVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWLELNCTV 475

Query: 508 HCFSVADKAHPCSVSI 523
           H F +  + H C++ +
Sbjct: 476 HGFQL--ETHDCAILV 489


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/515 (32%), Positives = 271/515 (52%), Gaps = 35/515 (6%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           ++  A+  S+++ KQ H   L  G  S  FV + L   Y+ CG    +  VF  +  KD 
Sbjct: 113 IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE 172

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             + ++I+GY K     EAL  F  M    V+ D   L +     G +K    G  +H  
Sbjct: 173 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 232

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            +K+GF  D+ + N+L  MY K G      N+F       + S                 
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVF------GIDS----------------- 269

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                     + RNV ++T +I+GYV+   +++ L +F+E++ +  IEPN+ +  S++  
Sbjct: 270 ----------ECRNVVSYTCLIDGYVETEQIEKGLSVFVELR-RQGIEPNEFTFSSLIKA 318

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C++   L  G Q+H   ++   + D  + + L+DMY KCG L+ A + F++   +   I 
Sbjct: 319 CANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIG-DPTEIA 377

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+S+VS +G HG G +A+  + +MV  G KP+ IT + +L+ C  +GL+ EGL+ + S+ 
Sbjct: 378 WNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMD 437

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
            TY + P  E  +CV+D+LGRAG+L  A +FI  MP EP+   W + + A  +HG+ EM 
Sbjct: 438 KTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMG 497

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
            LA + L++LEP+N    V LSN+YA+ R+W+ V  +R  M+D  +KK PG SW+ +  K
Sbjct: 498 KLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYK 557

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           TH F   D +H    +IYE LD L+  ++ A   P
Sbjct: 558 THVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVP 592



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 37/295 (12%)

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D   LA + +   + K L  G  +H L I  G+     L N L++MY KCG+    L LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D MP                                  +RN+ +WTAMI+G  QN    E
Sbjct: 64  DTMP----------------------------------QRNLVSWTAMISGLSQNSKFSE 89

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           A+  F  M++   + P + +  S +  C+SL  +  GKQ+H  A++  +  ++ + + L 
Sbjct: 90  AIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLE 148

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           DMYSKCG++  A +VFE+    KD ++W++++ GY   G+  EA+L + KM+      D 
Sbjct: 149 DMYSKCGAMFDACKVFEEMP-CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQ 207

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
             +   L ACG       G  +++SV+     +    +   + DM  +AG ++ A
Sbjct: 208 HVLCSTLGACGALKACKFGRSVHSSVVK-LGFESDIFVGNALTDMYSKAGDMESA 261



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 3/199 (1%)

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +L  V+ T +    L  GKQ+H   I         L N L++MYSKCG LD A ++F D+
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF-DT 65

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              ++ ++W++++SG   + K  EA+  +  M   G  P        + AC   G I  G
Sbjct: 66  MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 125

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
            +++   +  + I     + + + DM  + G +  A    + MP +   S W A++    
Sbjct: 126 KQMHCLALK-FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVS-WTAMIDGYS 183

Query: 439 MHGNSEMQDLAYKSLIQLE 457
             G  E   LA+K +I  E
Sbjct: 184 KIGEFEEALLAFKKMIDEE 202



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 98/237 (41%), Gaps = 14/237 (5%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    ++  A   +L+   Q H+Q++ +    +PFVS+ L+  Y  CG    +   F+ I
Sbjct: 311 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEI 370

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
                  +NSL++ + ++    +A++ F  M    V P+  T   IS L+G     + G+
Sbjct: 371 GDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITF--ISLLTG---CSHAGL 425

Query: 142 LIHGLSI------KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRI 194
           +  GL          G V      + ++ +  + G+  E     + MP + N   W   +
Sbjct: 426 VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 485

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                 GD  +   +     +++ +N  A   + N Y      ++  V  + M+++D
Sbjct: 486 GACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWED--VRSVRMRMRD 540


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/515 (33%), Positives = 274/515 (53%), Gaps = 38/515 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L+L +Q H+ IL    I    +   +I  Y+ CG    S  VF+++  +DV  +N++++ 
Sbjct: 338 LELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSA 397

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           +V+N   +E L L   M       D  TL  +  L+  ++   +G   H   I+ G   +
Sbjct: 398 FVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE 457

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             + + L+ MY K G  +    LF++                  + D+            
Sbjct: 458 G-MDSYLIDMYAKSGLITTAQQLFEK------------------NSDYD----------- 487

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
              R+   W AMI GY QNG  +E   +F +M ++  + PN V+L S+LP C+ +  +  
Sbjct: 488 ---RDEATWNAMIAGYTQNGLSEEGFAVFRKM-IEQNVRPNAVTLASILPACNPMGTIGL 543

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GKQIHGFAIR  LN +V +  AL+DMYSK G++  A  VF ++   K+++T+++++S YG
Sbjct: 544 GKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAET-LEKNSVTYTTMISSYG 602

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            HG G  A+ L++ M+  G KPD +T V +LSAC  +GL++EGL I+ S+   Y+I+P+ 
Sbjct: 603 QHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSA 662

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLI 454
           E   CV DMLGR G++  A +F+K +  E +   IWG+L+ A  +HG  E+  +    L+
Sbjct: 663 EHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLL 722

Query: 455 QLEPEN--PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           ++E  +     +V LSN+YA+   WD V  +R  M+ +GL K  GCSW+ + G  +CF  
Sbjct: 723 EMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMS 782

Query: 513 ADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
            D  HP    IY+ML+ L + M+ A   P L   T
Sbjct: 783 RDHKHPQCAEIYQMLEKLAMEMKDAGYKPCLNLQT 817



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 201/473 (42%), Gaps = 85/473 (17%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           S  + S T    L+  A  RSLKL K  H  +L     S+  V   L+  Y+ C      
Sbjct: 99  SPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPY 158

Query: 75  -------------QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
                        + VF++++ ++V  +N++I+ YVK     EA ++F  M    + P  
Sbjct: 159 LGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTP 218

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIG--FVVDVILANSLMSMYVKCGKFSECLNLF 179
            +   +      + D +   +++GL +K+G  FV D  + +S + MY + G    C++  
Sbjct: 219 VSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELG----CVDF- 273

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
                                        +R +FD    RN   W  MI GYVQN    E
Sbjct: 274 -----------------------------AREIFDCCLERNTEVWNTMIGGYVQNNCPIE 304

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           A+ LF+++   ++   + V+ +S L   S L  L  G+Q+H + ++      V + NA+I
Sbjct: 305 AIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAII 364

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
            MYS+CGS+  + +VF +    +D +TW+++VS +  +G   E ++L   M   G   D 
Sbjct: 365 VMYSRCGSIGTSFKVFSN-MLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDS 423

Query: 360 ITIVGVLSACG----------------RSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           +T+  +LS                   R G+  EG++ Y                  ++D
Sbjct: 424 VTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSY------------------LID 465

Query: 404 MLGRAGQLDRALD-FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           M  ++G +  A   F K    +   + W A+++    +G SE     ++ +I+
Sbjct: 466 MYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIE 518



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 178/382 (46%), Gaps = 33/382 (8%)

Query: 67  LC--GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP--DDF 122
           LC  G P Q+  +F+SI      L+N++I G++ N+   +AL  ++ M  S  SP  D +
Sbjct: 47  LCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASP-SPKFDSY 105

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T ++  K   + + L +G  +H   ++  F    I+ NSL++MY  C           E+
Sbjct: 106 TFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTC---------LTEV 156

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P               ++ DF+     RRVFD M++RNV AW  MI+ YV+   L EA  
Sbjct: 157 PYL------------GTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFK 204

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLCNALID 300
           +F  M ++  I P  VS V+V P    +        ++G  ++   +   D  + ++ I 
Sbjct: 205 MFRTM-MRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIF 263

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK-MVCLGSKPDI 359
           MY++ G +D AR +F D    ++   W++++ GY  +    EA+ L+ + M       D 
Sbjct: 264 MYAELGCVDFAREIF-DCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDD 322

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           +T +  L+A  +   +  G +++  ++ +  I     + A +V M  R G +  +     
Sbjct: 323 VTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIV-MYSRCGSIGTSFKVFS 381

Query: 420 TMPVEPSPSIWGALVSASVMHG 441
            M +E     W  +VSA V +G
Sbjct: 382 NM-LERDVVTWNTMVSAFVQNG 402



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 120/243 (49%), Gaps = 10/243 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF- 78
           S T+   L +++  RS ++ KQ+H+ ++  G I    + + LI  YA  G  T +Q +F 
Sbjct: 423 SVTLTALLSLASNLRSQEIGKQAHAYLIRHG-IQFEGMDSYLIDMYAKSGLITTAQQLFE 481

Query: 79  -NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
            NS   +D   +N++I GY +N    E   +F  M   NV P+  TLA+I      +  +
Sbjct: 482 KNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTI 541

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            +G  IHG +I+     +V +  +L+ MY K G  +   N+F E  ++N  ++   IS +
Sbjct: 542 GLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSY 601

Query: 198 ASSGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
              G   +  R+  +F  M     + +   + A+++     G +DE L +F  M+ + +I
Sbjct: 602 GQHG---MGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKI 658

Query: 254 EPN 256
           +P+
Sbjct: 659 QPS 661


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/497 (33%), Positives = 263/497 (52%), Gaps = 37/497 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K  H+ +L L    N  V   LIT Y  C     ++ VF S+   DV  YN LI GY   
Sbjct: 367 KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVL 426

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL-NVGMLIHGLSIKIGFVVDVIL 158
               +A+++FS +  + + P+  T+  I        DL N G  +H   I+ GF+ D  +
Sbjct: 427 EDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSDEYV 486

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
           ANSL++MY KCG      N                                  +F+ +  
Sbjct: 487 ANSLITMYAKCGNLESSTN----------------------------------IFNSITN 512

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           +N+ +W A+I    Q G  +EAL LF++MQ     + ++V L   L +C+SL  L  G Q
Sbjct: 513 KNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGN-KLDRVCLAECLSSCASLASLEEGMQ 571

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HG  ++  L+ D  + NA +DMY KCG ++   ++  D +       W++++SGY  +G
Sbjct: 572 LHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQ-CWNTLISGYAKYG 630

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              EA   + +MV +G KPD +T V +LSAC  +GL+++G++ YNS+ +++ + P  + C
Sbjct: 631 YFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHC 690

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C+VD+LGR G+   A  FI+ MPV P+  IW +L+S+S  H N E+   A K L++L+P
Sbjct: 691 VCIVDLLGRLGRFAEAERFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKAAKKLLELDP 750

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
            + S YV LSNLYA++ RW  V +LR+ MK   + K P CSW+ +  +   F + D+ H 
Sbjct: 751 FDDSAYVLLSNLYATNARWVDVDKLRSHMKTININKRPACSWLKLKNEVSTFGIGDRGHK 810

Query: 519 CSVSIYEMLDDLILIMR 535
            +  IY  LD+++L +R
Sbjct: 811 HAEKIYAKLDEMLLKLR 827



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 188/405 (46%), Gaps = 39/405 (9%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q  S ++  G  +   V+  LIT +   G+   ++ +F+ ++  D    N++I+ Y    
Sbjct: 166 QVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQG 225

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
             ++   +FS+M +  + PD  TL ++  +       + G  IH L ++      V + N
Sbjct: 226 ICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVIN 285

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
           +L++MY   GK S+   LF  M +R++ SWN                             
Sbjct: 286 ALVNMYSAAGKLSDAEFLFWNMSRRDLISWNT---------------------------- 317

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
                 MI+ YVQN +  +AL    ++   + I PN ++  S L  CSS   L  GK +H
Sbjct: 318 ------MISSYVQNCNSTDALKTLGQLFHTNEI-PNHLTFSSALGACSSPGALIDGKMVH 370

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
              ++  L  ++ + N+LI MY KC S++ A +VF+ S    D ++++ ++ GY +   G
Sbjct: 371 AIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQ-SMPTHDVVSYNVLIGGYAVLEDG 429

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG-LINEGLEIYNSVINTYRIKPTTEICA 399
            +A+ +++ +   G KP+ IT++ +  +   S  L N G  ++  +I T  +     +  
Sbjct: 430 TKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSDEY-VAN 488

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            ++ M  + G L+ + +   ++  +   S W A+++A+   G+ E
Sbjct: 489 SLITMYAKCGNLESSTNIFNSITNKNIVS-WNAIIAANAQLGHGE 532



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 188/433 (43%), Gaps = 44/433 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+     G + N ++ T L+  Y   G  + ++ +F  +  ++V  + +L+     N   
Sbjct: 67  HALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYL 126

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            E L  +  M    V  +    AT+  L G +++   G+ +    I  G    V +ANSL
Sbjct: 127 EETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSL 186

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           ++M+   G+  +   LFD M + +  S N                               
Sbjct: 187 ITMFGNLGRVQDAEKLFDRMEEHDTISRN------------------------------- 215

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
              AMI+ Y   G   +  ++F +M+    + P+  +L S++  C+S    S G  IH  
Sbjct: 216 ---AMISMYSHQGICSKCFLVFSDMR-HHGLRPDATTLCSLMSVCASADHFSHGSGIHSL 271

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            +R  L+  V++ NAL++MYS  G L  A  +F + S  +D I+W++++S Y  +    +
Sbjct: 272 CLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMS-RRDLISWNTMISSYVQNCNSTD 330

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+    ++      P+ +T    L AC   G + +G ++ ++++    ++    +   ++
Sbjct: 331 ALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDG-KMVHAIVLQLSLQRNLLVGNSLI 389

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS--ASVMHGNSEMQDLAYKSLIQLEPEN 460
            M G+   ++ A    ++MP     S +  L+   A +  G   MQ  ++     ++P  
Sbjct: 390 TMYGKCNSMEDAEKVFQSMPTHDVVS-YNVLIGGYAVLEDGTKAMQVFSWIRSAGIKP-- 446

Query: 461 PSNYVSLSNLYAS 473
             NY+++ N++ S
Sbjct: 447 --NYITMINIHGS 457


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 266/458 (58%), Gaps = 15/458 (3%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +I AY    Q   +  +F  +  KD   + ++INGYV+     +A E+ + M Y N++  
Sbjct: 270 MIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQ 329

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
              +    + SG + + N   +   +S++     D +  NS+++ Y  CG+  E L LF 
Sbjct: 330 TAMINGYLQ-SGRMDEAN--EIFSQISVR-----DSVCWNSMITGYAHCGRTDEALRLFQ 381

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           EM  +++ SWN  I+ +A +G      ++  +F++M+ RNV +W ++I GYVQNG   EA
Sbjct: 382 EMVCKDMVSWNTMIAAYAQAGQMD---KALEMFNEMQERNVVSWNSLITGYVQNGLYFEA 438

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L  F+ M+ +   +P++ ++V  L   ++L  L+ G Q+H   I+    +D+ + NA++ 
Sbjct: 439 LNCFILMKQQGE-KPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILT 497

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY+K G +  A  VF +    KD ++W+S+++GY L+G G EAV L+  M   G  PD +
Sbjct: 498 MYAKSGRVPEAENVFAEIK-XKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEV 556

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T  G+LSAC   G +++GL ++ S+  TY IKP +E  ACV+++LGR G+L+ A++ ++ 
Sbjct: 557 TFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQG 616

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           M    S  IWGAL+ A  +H N E+   + + L+ LEP+N SNYV LSN++A + RWD V
Sbjct: 617 MKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMV 676

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
             +R +MK+   +K PGCSWI I  + HCF    KA P
Sbjct: 677 ERVRVLMKENKAEKQPGCSWIEIDNQLHCF--LSKAPP 712



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 187/387 (48%), Gaps = 38/387 (9%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           +++AR  F L+  RN  S  + +  +L       + +L  +   +        + +  T 
Sbjct: 62  IANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKR--------DIYSWTL 113

Query: 61  LITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           +IT Y   G+  +++ +FN +  K D    N+LI GY K     EA +LF  M   NV  
Sbjct: 114 MITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNV-- 171

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-VVDVILANSLMSMYVKCGKFSECLNL 178
               ++  S LSG  K+   G +  GL         +V+  N ++  YV  G        
Sbjct: 172 ----VSWNSILSGYTKN---GKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMF 224

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F ++P  NV SW   +SG A  G  +    +R +F++M  +N+ +W AMI  YV+   +D
Sbjct: 225 FKKIPTPNVVSWVTMLSGFAHYGRMT---EARNLFNEMPTKNLVSWNAMIGAYVRENQID 281

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           +A  LF+EM  KD      VS  +++     +  L   ++I      K    +++   A+
Sbjct: 282 DAYKLFMEMPEKD-----SVSWTAMINGYVRVGKLLQAREILNLMPYK----NIAAQTAM 332

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           I+ Y + G +D A  +F   S  +D++ W+S+++GY   G+  EA+ L+ +MVC     D
Sbjct: 333 INGYLQSGRMDEANEIFSQISV-RDSVCWNSMITGYAHCGRTDEALRLFQEMVC----KD 387

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSV 385
           +++   +++A  ++G +++ LE++N +
Sbjct: 388 MVSWNTMIAAYAQAGQMDKALEMFNEM 414



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 170/360 (47%), Gaps = 39/360 (10%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +++  NS++S Y K G+ +    LFD MPQRN+ SWN  I+G+  +    LV  + R+FD
Sbjct: 45  NIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHN---ELVEDAARLFD 101

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M +R++Y+WT MI  Y + G+L++A  LF        + P+K   V      ++LI   
Sbjct: 102 RMFKRDIYSWTLMITCYTRIGELEKARELF-------NLLPDKQDTVCR----NALIAGY 150

Query: 275 GGKQIHGFAIR---KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
             K++   A +   + L  +V   N+++  Y+K G +    + FE     ++ ++W+ +V
Sbjct: 151 AKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMG-ERNVVSWNLMV 209

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            GY   G    A + + K+      P++++ V +LS     G + E   ++N +     +
Sbjct: 210 DGYVGVGDLDSAWMFFKKI----PTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLV 265

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
                I A V     R  Q+D A      MP + S S W A+++  V  G    + L  +
Sbjct: 266 SWNAMIGAYV-----RENQIDDAYKLFMEMPEKDSVS-WTAMINGYVRVG----KLLQAR 315

Query: 452 SLIQLEP-ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS-IHGKTHC 509
            ++ L P +N +   ++ N Y  S R D   E+ + +  R         W S I G  HC
Sbjct: 316 EILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVR-----DSVCWNSMITGYAHC 370



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 129/290 (44%), Gaps = 48/290 (16%)

Query: 3   LSSARNTFALVTSRNYTSAT--VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           L  AR    L+  +N  + T  +  +LQ      +        ++I S   + +      
Sbjct: 311 LLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEA--------NEIFSQISVRDSVCWNS 362

Query: 61  LITAYALC-------------------------------GQPTQSQLVFNSIQHKDVYLY 89
           +IT YA C                               GQ  ++  +FN +Q ++V  +
Sbjct: 363 MITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSW 422

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           NSLI GYV+N  + EAL  F  M      PD  T+    + S  +  LNVG+ +H L+IK
Sbjct: 423 NSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIK 482

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            GF  D+ + N++++MY K G+  E  N+F E+  ++V SWN  I+G+A +G     V  
Sbjct: 483 TGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAV-- 540

Query: 210 RRVFDQMKRRNV----YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
             +F+ M  R +      +T +++     G +D+ L LF  M     I+P
Sbjct: 541 -ELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKP 589


>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 613

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 180/533 (33%), Positives = 295/533 (55%), Gaps = 19/533 (3%)

Query: 26  FLQVSATHRSL-KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           FL  S    SL +L  Q H+ +   G  SN FV   L+  Y + G    +  VF+    +
Sbjct: 85  FLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESPVR 144

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D   YN++ING V+      ++ +F+ M    V PD++T   +      ++D  +G ++H
Sbjct: 145 DSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVH 204

Query: 145 GLSI-KIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEM-----PQRNVGSWNVRISGH 197
           GL   K+G F  + +L N+L+ MY KCG    CL + + +      +  V +W   +S +
Sbjct: 205 GLVYRKLGCFGENELLVNALVDMYAKCG----CLEVAERVVRNGNGKSGVAAWTSLVSAY 260

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A  G+  +   +RR+FDQM  R+V +WTAMI+GY   G   EAL LF+E++    +EP++
Sbjct: 261 ALRGEVEV---ARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELE-DLGMEPDE 316

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRK--ELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           V +V+ L  C+ L  L  G++IH    R   +  H+     A++DMY+KCGS++ A  VF
Sbjct: 317 VVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVF 376

Query: 316 EDSSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
             +S + K    ++SI+SG   HG+G  A+ L+ +M  +G +PD +T V +L ACG SGL
Sbjct: 377 LKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACGHSGL 436

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++ G  ++ S+++ Y + P  E   C+VD+LGRAG L+ A   I+ MP + +  IW AL+
Sbjct: 437 VDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMPFKANAVIWRALL 496

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
           SA  + G+ E+  LA + L+ +E ++ + YV LSN+     + D  A +R  + + G++K
Sbjct: 497 SACKVDGDVELARLASQELLAMENDHGARYVMLSNMLTLMDKHDEAASVRRAIDNVGIQK 556

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
            PG S + ++G  H F   DK+HP + +   ML D+ + ++    S  + KM 
Sbjct: 557 PPGWSHVEMNGTLHKFLAGDKSHPEAKATEFMLRDIDMGLKSIGHSISVSKMV 609



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 205/459 (44%), Gaps = 77/459 (16%)

Query: 50  GHISNPFVSTKLITAYALCGQPT--QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
           G   +PF+ T LI+ +A         S L+F  I + D++L+N +I  +  +   + AL 
Sbjct: 5   GRHHDPFLMTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALS 64

Query: 108 LFSNMYYSN--VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           L+  M  S+  + PD FT   + K   ++    +G+ +H    K GF  +V + N+L+ +
Sbjct: 65  LYKKMLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQV 124

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y   G       +FDE P R+  S+N                                  
Sbjct: 125 YFVFGDARNACRVFDESPVRDSVSYNT--------------------------------- 151

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
            +ING V+ G    ++ +F EM+    +EP++ + V++L  CS L     G+ +HG   R
Sbjct: 152 -VINGLVRAGRAGCSMRIFAEMR-GGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYR 209

Query: 286 KE--LNHDVSLCNALIDMYSKCGSLDCARRVFE--------------------------- 316
           K      +  L NAL+DMY+KCG L+ A RV                             
Sbjct: 210 KLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVA 269

Query: 317 ----DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
               D    +D ++W++++SGY   G   EA+ L+ ++  LG +PD + +V  LSAC R 
Sbjct: 270 RRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARL 329

Query: 373 GLINEGLEIYNSV-INTYRIKPTTEICACVVDMLGRAGQLDRALD-FIKTMPVEPSPSIW 430
           G +  G  I++    ++++          VVDM  + G ++ ALD F+KT     +  ++
Sbjct: 330 GALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLY 389

Query: 431 GALVSASVMHGNSE--MQDLAYKSLIQLEPENPSNYVSL 467
            +++S    HG  E  M       L+ LEP+  + YV+L
Sbjct: 390 NSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVT-YVAL 427


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 272/485 (56%), Gaps = 38/485 (7%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T LI  YA  G    +Q +F+ I  KDV  +N++I+GY +   + EALELF +M  +NV 
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           PD+ T+ T+     +   + +G  +H      GF  ++ + N+L+ +Y KCG+      L
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F+ +P ++V S                                  W  +I GY       
Sbjct: 324 FERLPYKDVIS----------------------------------WNTLIGGYTHMNLYK 349

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLCN 296
           EAL+LF EM L+    PN V+++S+LP C+ L  +  G+ IH +  +  K + +  SL  
Sbjct: 350 EALLLFQEM-LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT 408

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           +LIDMY+KCG ++ A +VF +S  +K   +W++++ G+ +HG+   +  L+++M  +G +
Sbjct: 409 SLIDMYAKCGDIEAAHQVF-NSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD IT VG+LSAC  SG+++ G  I+ ++   Y++ P  E   C++D+LG +G    A +
Sbjct: 468 PDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEE 527

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
            I  M +EP   IW +L+ A  MHGN E+ +   ++LI++EPENP +YV LSN+YAS+ R
Sbjct: 528 MINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGR 587

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRG 536
           W+ VA+ R ++ D+G+KK PGCS I I    H F + DK HP +  IY ML+++ +++  
Sbjct: 588 WNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEK 647

Query: 537 AAASP 541
           A   P
Sbjct: 648 AGFVP 652



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 237/436 (54%), Gaps = 22/436 (5%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC----GQP 71
           RN+ S ++ H  +   T +SL++    H+Q++ +G  +  +  +KLI    L     G P
Sbjct: 32  RNHPSLSLLHNCK---TLQSLRII---HAQMIKIGLHNTNYALSKLIEFCILSPHFEGLP 85

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
                VF +IQ  ++ ++N++  G+  +     AL+L+  M    + P+ +T   + K  
Sbjct: 86  YAIS-VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSC 144

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
            + K    G  IHG  +K+G  +D+ +  SL+SMYV+ G+  +   +FD+ P R+V S+ 
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYT 204

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
             I G+AS G    +  ++++FD++  ++V +W AMI+GY + G+  EAL LF +M +K 
Sbjct: 205 ALIKGYASRG---YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM-MKT 260

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            + P++ ++V+V+  C+    +  G+Q+H +        ++ + NALID+YSKCG L+ A
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETA 320

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
             +FE   + KD I+W++++ GY       EA+LL+ +M+  G  P+ +T++ +L AC  
Sbjct: 321 CGLFERLPY-KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 379

Query: 372 SGLINEGLEIYNSVINTYRIKPTTE---ICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
            G I+ G  I+  V    R+K  T    +   ++DM  + G ++ A     ++ +  S S
Sbjct: 380 LGAIDIGRWIH--VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLS 436

Query: 429 IWGALVSASVMHGNSE 444
            W A++    MHG ++
Sbjct: 437 SWNAMIFGFAMHGRAD 452


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/524 (32%), Positives = 288/524 (54%), Gaps = 36/524 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T   FL + +   +L+  K+ H  I+  G   + F+ + LI  Y  C     ++ +F+
Sbjct: 349 SITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFD 408

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
                D+ +  ++I+GYV N  +N ALE+F  +    +  +  TLA++      +  L +
Sbjct: 409 QRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTL 468

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG  +K G      + +++M MY KCG+    L+L                     
Sbjct: 469 GKELHGHILKNGHGGSCYVGSAIMDMYAKCGR----LDL--------------------- 503

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    + + F  +  ++   W +MI    QNG  +EA+ LF +M +    + + VS
Sbjct: 504 ---------AHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAG-TKYDCVS 553

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           + + L  C++L  L  GK+IH F +R     D+   +ALIDMYSKCG+LD A RVF D+ 
Sbjct: 554 ISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVF-DTM 612

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             K+ ++W+SI++ YG HG+  +++ L++ M+  G +PD +T + ++SACG +G ++EG+
Sbjct: 613 EEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGI 672

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
             +  +     I    E  AC+VD+ GRAG+L+ A   I +MP  P   +WG L+ A  +
Sbjct: 673 HYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRL 732

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           HGN E+ ++A ++L  L+P+N   YV LSN++A++ +W++V ++R++MK+RG++K PGCS
Sbjct: 733 HGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCS 792

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           WI ++  TH F  AD++HP S  IY +L +L L +R     P L
Sbjct: 793 WIDVNNTTHMFVAADRSHPQSSQIYLLLKNLFLELRKEGYVPQL 836



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 211/429 (49%), Gaps = 40/429 (9%)

Query: 14  TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73
           T  N  S T    L V A+   +    Q H  ++S G   +  V+  L+  YA CG    
Sbjct: 242 TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFD 301

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           ++ +F+ +   D+  +N +I+GYV+N   +EA  LF  M  + + PD  T ++   L  E
Sbjct: 302 ARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSE 361

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
              L  G  IH   I+ G  +DV L ++L+ +Y KC                        
Sbjct: 362 GATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRD---------------------- 399

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                       V  +R++FDQ    ++   TAMI+GYV NG  + AL +F  + L++R+
Sbjct: 400 ------------VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWL-LQERM 446

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
             N V+L SVLP C+ L  L+ GK++HG  ++        + +A++DMY+KCG LD A +
Sbjct: 447 RANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQ 506

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
            F   S +KDA+ W+S+++    +GK  EA+ L+ +M   G+K D ++I   LSAC    
Sbjct: 507 TFIGIS-DKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLP 565

Query: 374 LINEGLEIYNSVI-NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
            ++ G EI+  ++   +R     E  + ++DM  + G LD A     TM  E +   W +
Sbjct: 566 ALHYGKEIHAFMMRGAFRSDLFAE--SALIDMYSKCGNLDLACRVFDTME-EKNEVSWNS 622

Query: 433 LVSASVMHG 441
           +++A   HG
Sbjct: 623 IIAAYGNHG 631



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 212/424 (50%), Gaps = 40/424 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  + ++      S+ L +  H +I  +G   + FV + LI  Y+  G    ++ +F+ +
Sbjct: 149 TFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM 208

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD  L+N ++NGYVKN   + A  +F  M  +  +P+  T A +  +      +N G 
Sbjct: 209 PSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGS 268

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HGL +  G  +D  +AN+L++MY KCG      +LFD                     
Sbjct: 269 QLHGLVVSSGLEMDSPVANTLLAMYAKCG------HLFD--------------------- 301

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  +RR+FD M + ++  W  MI+GYVQNG +DEA  LF EM +  R++P+ ++  
Sbjct: 302 -------ARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEM-ISARMKPDSITFS 353

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S LP  S    L  GK+IH + IR  ++ DV L +ALID+Y KC  ++ AR++F D    
Sbjct: 354 SFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIF-DQRTP 412

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
            D +  ++++SGY L+G  + A+ ++  ++    + + +T+  VL AC     +  G E+
Sbjct: 413 VDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKEL 472

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRA-LDFIKTMPVEPSPSIWGALVSASVMH 440
           +  ++       +  + + ++DM  + G+LD A   FI     +     W +++++   +
Sbjct: 473 HGHILKNGH-GGSCYVGSAIMDMYAKCGRLDLAHQTFIGI--SDKDAVCWNSMITSCSQN 529

Query: 441 GNSE 444
           G  E
Sbjct: 530 GKPE 533



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 166/360 (46%), Gaps = 36/360 (10%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           LQ       L   +Q+H+Q+L  G   N  + TKL+  Y LCG    ++ +F  ++    
Sbjct: 53  LQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCS 112

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N +I G+      + AL  +  M      PD +T   + K  G +  + +G ++H  
Sbjct: 113 EPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDK 172

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
              +GF +DV + +SL+  Y + G   +   LFD MP ++   WNV ++G+  +GD+   
Sbjct: 173 IQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDW--- 229

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                                          D A  +F+EM+ +    PN V+   VL  
Sbjct: 230 -------------------------------DNATGVFMEMR-RTETNPNSVTFACVLSV 257

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+S I ++ G Q+HG  +   L  D  + N L+ MY+KCG L  ARR+F D     D +T
Sbjct: 258 CASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLF-DMMPKTDLVT 316

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+ ++SGY  +G   EA  L+++M+    KPD IT    L        + +G EI+  +I
Sbjct: 317 WNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYII 376



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 144/339 (42%), Gaps = 40/339 (11%)

Query: 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183
           L +I +   +   L+ G   H   +  G   + IL   L+ MYV CG F           
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAF----------- 97

Query: 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
                                  + ++ +F Q++      W  MI G+   G  D AL+ 
Sbjct: 98  -----------------------LDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLF 134

Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
           + +M L     P+K +   V+  C  L  ++ G+ +H          DV + ++LI  YS
Sbjct: 135 YFKM-LGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYS 193

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           + G +  AR +F D   +KD + W+ +++GY  +G    A  ++ +M    + P+ +T  
Sbjct: 194 ENGCIHDARYLF-DRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFA 252

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            VLS C    +IN G +++  V+++  ++  + +   ++ M  + G L  A      MP 
Sbjct: 253 CVLSVCASEIMINFGSQLHGLVVSS-GLEMDSPVANTLLAMYAKCGHLFDARRLFDMMP- 310

Query: 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLI--QLEPEN 460
           +     W  ++S  V +G  +     +  +I  +++P++
Sbjct: 311 KTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDS 349



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 5/201 (2%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           Y   ++   L   A   +L   K+ H+ ++     S+ F  + LI  Y+ CG    +  V
Sbjct: 549 YDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRV 608

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           F++++ K+   +NS+I  Y  NHG   ++L LF  M    + PD  T   I    G    
Sbjct: 609 FDTMEEKNEVSWNSIIAAY-GNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQ 667

Query: 137 LNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRI 194
           ++ G+     ++ ++G +  +     ++ ++ + G+ +E   + + MP   + G W   +
Sbjct: 668 VDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLL 727

Query: 195 SGHASSGDFSLV-VRSRRVFD 214
                 G+  L  V SR +FD
Sbjct: 728 GACRLHGNVELAEVASRNLFD 748


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 177/544 (32%), Positives = 281/544 (51%), Gaps = 45/544 (8%)

Query: 7   RNTFALVTSRNYTSATVQHFLQVSATHRS-LKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           +    +++  +  S      L +   HRS L    + H  IL  G   +PF++TKLI  Y
Sbjct: 63  KQALRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMY 122

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSLINGY-VKNHGHNEALELFSNMYYSNVSPDDFTL 124
           +  G    ++ VF+  + + +Y++N+L     +  HG  E L L+  M    V  D FT 
Sbjct: 123 SDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHG-EEVLGLYWKMNRIGVESDRFTY 181

Query: 125 ATISK--LSGEI--KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
             + K  ++ E     L  G  IH    + G+   V +  +L+ MY +            
Sbjct: 182 TYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYAR------------ 229

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                                 F  V  +  VF+ M  RNV +W+AMI  Y +NG   EA
Sbjct: 230 ----------------------FGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEA 267

Query: 241 LVLFLEM--QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           L  F EM  + KD   PN V++VSVL  C+SL  L  G+ IHG+ +R+ L+  + + +AL
Sbjct: 268 LRTFREMMTETKDS-SPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISAL 326

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           + MY +CG LD  +RVF D   ++D ++W+S++S YG+HG G +A+ ++ +M+  G+ P 
Sbjct: 327 VTMYGRCGKLDVGQRVF-DRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPT 385

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            +T V VL AC   GL+ EG  ++ S+   + IKP  E  AC+VD+LGRA +LD A   +
Sbjct: 386 PVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMV 445

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
           + M  EP P +WG+L+ +  +HGN E+ + A + L  LEP+N  NYV L+++YA ++ WD
Sbjct: 446 QDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWD 505

Query: 479 AVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
            V  ++ +++ RGL+K PG  W+ +  K + F   D+ +P    I+  L  L   M+   
Sbjct: 506 EVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKG 565

Query: 539 ASPH 542
             P 
Sbjct: 566 YIPQ 569


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 176/527 (33%), Positives = 276/527 (52%), Gaps = 40/527 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP---TQSQ 75
           +S T    L  +   +SL   +Q+H+ +L  G   + F ++KL+   A   +P   + + 
Sbjct: 5   SSTTPVPILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAH 64

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
            + N I+  + + +NS+I  Y  +     AL +F  M    V PD ++   + K      
Sbjct: 65  SILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFC 124

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS---------------------- 173
               G  IHGL +K   V DV + N+L+++Y + G F                       
Sbjct: 125 GFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLS 184

Query: 174 ---------ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
                    E   LFDEM +RNV SWN  ISG+A++G   LV  +R VFD M  ++V +W
Sbjct: 185 AYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAG---LVKEAREVFDSMPVKDVVSW 241

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIE-PNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
            AM+  Y   G  +E L +F  M L D  E P+  +LV+VL  C+SL  LS G+ +H + 
Sbjct: 242 NAMVTAYAHVGCYNEVLEVF-NMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYI 300

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
            +  +  +  +  AL+DMYSKCG +D A  VF D+S  +D  TW+SI++G  +HG G +A
Sbjct: 301 DKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTS-KRDVSTWNSIITGLSVHGLGKDA 359

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + ++++MV  G KP+ IT +GVLSAC   GL+++  +++  + + Y I+PT E   C+VD
Sbjct: 360 LEIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVD 419

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           +LGR G+ + A + +  +P + +  +  +L+ A    G  E  +     L++  P   S 
Sbjct: 420 LLGRMGKFEEAEELVNEVPADEASILLESLLGACKRFGKLEQAERIANRLLESNPRESSG 479

Query: 464 YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           YV +SNLYAS  RWD   E+R  M+   +KK+PGCS I + G  H F
Sbjct: 480 YVQMSNLYASHGRWDEAMEVRGKMRAERVKKNPGCSMIEVDGVVHEF 526


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 279/523 (53%), Gaps = 38/523 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           T+   L V +    L   ++ H+ ++  G H++   V   LI AY  CG    +  VF+ 
Sbjct: 273 TMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDG 332

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNV 139
           I  K V  +N+LI  + +N   + A+ELF  M  +    PD F++ ++    G +K L  
Sbjct: 333 ICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLH 392

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G   HG  ++ G   D  +  SL+S+Y++CG+ S                          
Sbjct: 393 GKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRES-------------------------- 426

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE-PNKV 258
                    +R +FD ++ ++  +W  MI GY QNG   E+L LF EMQ K     P+ +
Sbjct: 427 --------LARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLL 478

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +  S L  CS L  +  GK++H FA++ +L  D  L +++IDMYSKCGS+D AR VF D 
Sbjct: 479 AATSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDAR-VFFDR 537

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              KDA++W+ +++GY ++G+G EAV LY+KM   G +PD  T +G+L ACG +G++ +G
Sbjct: 538 LKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDG 597

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           L  +  + N  +I+   E  ACV+ ML RAG+   A+  ++ MP EP   I  +++SA  
Sbjct: 598 LCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACH 657

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           MHG  E+       L++LEP    +YV  SN+YA SR+WD + ++R M++D G+ K PGC
Sbjct: 658 MHGEVELGKKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGC 717

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           SWI I GK + F   + + P    + +M   L   +R A  +P
Sbjct: 718 SWIDIAGKVYSFVAGENSLPEMHKVRKMWYSLEEKIRAAGYAP 760



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 164/341 (48%), Gaps = 48/341 (14%)

Query: 40  KQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
           +Q H+    LG    +PFV   L++ Y  CG+   ++ VF  +  +++  +N+L+     
Sbjct: 83  RQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVAD 142

Query: 99  NHGHNEALELFSNMYY---SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
                  LELF +         +PD+ TL T+  +   +     G  +HGL++K G+   
Sbjct: 143 P---RRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAA 199

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQ---RNVGSWNVRISGHASSGDFSLVVRSRRV 212
             ++N L+ MY KCG+ ++    F E P    RNV SWNV + G                
Sbjct: 200 PRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGG---------------- 243

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSSLI 271
                             Y +NG+   A  L  EMQ+++R  P ++++++SVLP CS L 
Sbjct: 244 ------------------YARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLP 285

Query: 272 GLSGGKQIHGFAIRKELNHDVSLC-NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
            L+  +++H F +R+ L+    +  NALI  Y +CG L  A RVF D   +K   +W+++
Sbjct: 286 ELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVF-DGICSKMVSSWNAL 344

Query: 331 VSGYGLHGKGHEAVLLYNKMV-CLGSKPDIITIVGVLSACG 370
           +  +  +G+   A+ L+ +M    G KPD  +I  +L ACG
Sbjct: 345 IGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACG 385



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 171/399 (42%), Gaps = 68/399 (17%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSN--VSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
           +N L+    +   H +AL +   +  ++  V+PD FTL    K S    D   G  +H +
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALK-SCRGDD---GRQVHAV 88

Query: 147 SIKIGFV-VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
           + K+G    D  + NSL+SMY +CG+  +                               
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDD------------------------------- 117

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM--QLKDRIEPNKVSLVSV 263
              + +VF+ M  RN+ +W A++       D    L LF +    L     P++ +LV+V
Sbjct: 118 ---AEKVFEGMAGRNLVSWNALMAAVA---DPRRGLELFRDCLEDLGGTAAPDEATLVTV 171

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS--SFN 321
           LP C++L     G+ +HG A++   +    + N L+DMY+KCG +  A   F ++     
Sbjct: 172 LPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAG 231

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVC--LGSKPDIITIVGVLSACGRSGLINEGL 379
           ++ ++W+ ++ GY  +G+   A  L  +M     G   D IT++ VL  C     + +  
Sbjct: 232 RNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLR 291

Query: 380 EIYNSVIN-----TYRIKPTTEICACVVDMLGRAGQL---DRALDFIKTMPVEPSPSIWG 431
           E++  V+      T  + P   I A      GR G L    R  D I +  V    S W 
Sbjct: 292 ELHAFVVRRGLHLTGDMVPNALIAA-----YGRCGCLLHACRVFDGICSKMV----SSWN 342

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           AL+ A   +G +      ++ +     + P ++ S+ +L
Sbjct: 343 ALIGAHAQNGEASAAIELFREMTNACGQKP-DWFSIGSL 380


>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Brachypodium distachyon]
          Length = 527

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/475 (34%), Positives = 278/475 (58%), Gaps = 12/475 (2%)

Query: 36  LKLT---KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL 92
           LKL+   +++H+  +  G   + + ++ L+  Y L G+   ++ +F+ + H+ + ++N +
Sbjct: 59  LKLSVEGRKAHAAAMKTGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMM 118

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG-LSIKIG 151
           I  YV+   +  A+ L   M  S ++PD  TL T   +     DL++G  IH  +    G
Sbjct: 119 IRCYVRCGRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFG 178

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F + V  AN+L+ MY+K G   E + LF++MP RN+ SW + +SG+A +G      ++R 
Sbjct: 179 FSLPV--ANALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLD---KARV 233

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +F Q   +++  WTAMIN  VQ+G  +EAL LF EMQ++ R+EP++ ++V++L  C++L 
Sbjct: 234 LFYQCSEKDLIMWTAMINACVQHGCFEEALSLFREMQMQ-RVEPDRFTIVTLLTCCANLG 292

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L  G+ IH FA+ +++  D  L  ALIDMY+KCG +  +  VFE     +D   W+SI+
Sbjct: 293 ALDQGEWIHQFAVDRKMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQ-GRDTTAWTSII 351

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            G   +G+   A+ L+  M     KPD IT +GVLSAC   GL++EG + ++++ + YRI
Sbjct: 352 CGLATNGQAGRALELFEDMERSKVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRI 411

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPV-EPSPSIWGALVSASVMHGNSEMQDLAY 450
            P  E  +C+V++LGRAG LD A   I+ + + + +  ++GAL++A    GN EM +   
Sbjct: 412 PPRIEHYSCLVNLLGRAGLLDEAEKLIRDIQINKDAMPLFGALLTACKAQGNVEMSERLT 471

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
           K + +   + P   + +SN+YA++ RW+    +R+ M    +KK+ GCS I + G
Sbjct: 472 KRIGEQGYQIPDVNLLMSNVYATASRWEDAIRVRSKMAHPTIKKTAGCSLIEVKG 526



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 164/385 (42%), Gaps = 70/385 (18%)

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N LI    +       + ++ ++    +  D FT   + +  G +K    G   H  ++K
Sbjct: 15  NLLIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAMK 74

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            GF  D   A+SLM MY   G+      LFDEMP R +  WN+                 
Sbjct: 75  TGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNM----------------- 117

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
                            MI  YV+ G    A+ L  EM+ +  + P+KV+LV+ +  CS 
Sbjct: 118 -----------------MIRCYVRCGRYTAAIALAEEME-RSGLTPDKVTLVTSVTVCSR 159

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
              LS G++IH + +       + + NAL+DMY K G L+ A ++FE    +++ I+W+ 
Sbjct: 160 AGDLSLGRRIHAY-MDGVFGFSLPVANALLDMYMKNGCLEEAVKLFEQMP-SRNIISWTI 217

Query: 330 IVSGYGL-------------------------------HGKGHEAVLLYNKMVCLGSKPD 358
           +VSGY                                 HG   EA+ L+ +M     +PD
Sbjct: 218 LVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINACVQHGCFEEALSLFREMQMQRVEPD 277

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
             TIV +L+ C   G +++G  I+   ++  ++K    +   ++DM  + G + ++++  
Sbjct: 278 RFTIVTLLTCCANLGALDQGEWIHQFAVDR-KMKVDAVLGTALIDMYAKCGHVKKSMEVF 336

Query: 419 KTMPVEPSPSIWGALVSASVMHGNS 443
           + M    + + W +++     +G +
Sbjct: 337 EQMQGRDTTA-WTSIICGLATNGQA 360



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 137/309 (44%), Gaps = 46/309 (14%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
            +A +  +++      ++KL +Q  S+        N    T L++ YA  GQ  +++++F
Sbjct: 184 ANALLDMYMKNGCLEEAVKLFEQMPSR--------NIISWTILVSGYAFAGQLDKARVLF 235

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
                KD+ ++ ++IN  V++    EAL LF  M    V PD FT+ T+      +  L+
Sbjct: 236 YQCSEKDLIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALD 295

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  IH  ++     VD +L  +L+ MY KCG   + + +F++M  R+  +W   I G A
Sbjct: 296 QGEWIHQFAVDRKMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLA 355

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
           +                                  NG    AL LF +M+ + +++P+ +
Sbjct: 356 T----------------------------------NGQAGRALELFEDME-RSKVKPDSI 380

Query: 259 SLVSVLPTC--SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + + VL  C    L+   G KQ H       +   +   + L+++  + G LD A ++  
Sbjct: 381 TFIGVLSACCHGGLVD-EGRKQFHAMKDVYRIPPRIEHYSCLVNLLGRAGLLDEAEKLIR 439

Query: 317 DSSFNKDAI 325
           D   NKDA+
Sbjct: 440 DIQINKDAM 448


>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Cucumis sativus]
          Length = 542

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/508 (32%), Positives = 283/508 (55%), Gaps = 14/508 (2%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS-----QLVFNSIQHKDVYL 88
           +S+   K+ H+ + +LG   +  + +KL+   AL   P +      +L+ N + +   + 
Sbjct: 24  KSMFELKRIHALLFTLGISQDETIKSKLLLFSAL--SPARDLDYSYKLILN-VPNPTTFN 80

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +N+LI  +      N ++ +F  M  + VSPD  T   + K + ++ +  +GM +H   +
Sbjct: 81  WNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIV 140

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K G  +D  + NSL+ MY  C   +    +FDEMP++N+ +WN  + G+A  GD ++   
Sbjct: 141 KSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNM--- 197

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           +R VF+ M  ++V +W+++I+GYV+     EA+ LF  M   D    N+V+LVS L  C+
Sbjct: 198 AREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSF-DGPMANEVTLVSALCACA 256

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK-DAITW 327
            L  L  G+ +H + +  EL   + L  +L+DMY+KCG++  A  VF   S  + D + W
Sbjct: 257 HLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIW 316

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++I+ G   HG   EA+ L+ +M  +G  PD IT + +LS C   GL+ E    ++  + 
Sbjct: 317 NAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDC-LR 375

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            + + P  E  AC+VD L RAGQ+  A  F+  MPV+P+ S+ GAL+S  + HG  ++  
Sbjct: 376 KHGMIPKVEHYACMVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGKLDIAK 435

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
           +  + L++L+P +   YV LSN+YA+ +RWD    +R  M+ +G+KKSPG S+I ++G  
Sbjct: 436 VVGRRLVELDPNHDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGVL 495

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMR 535
           H F   DK H     I+ ML+ ++  M+
Sbjct: 496 HRFMAHDKTHGDCEQIFMMLNLIVDQMK 523


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/509 (33%), Positives = 274/509 (53%), Gaps = 36/509 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  ++ R++ L +Q H+Q+L  G   N +VS+ LI  YA  G+   +  +F  +
Sbjct: 475 TYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRL 534

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KDV  + ++I GY ++    EAL LF  M    +  D+   A+       I+ LN G 
Sbjct: 535 KEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQ 594

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH  +   G+  D+ + N+L+S+Y +CGK                              
Sbjct: 595 QIHAQACVSGYSDDLSVGNALVSLYARCGK------------------------------ 624

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
               V  +   FD++  ++  +W ++I+G+ Q+G  +EAL LF +M  K   E N  +  
Sbjct: 625 ----VRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMS-KAGQEINSFTFG 679

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
             +   +++  +  GKQIH   I+   + +  + N LI +Y+KCG++D A R F +    
Sbjct: 680 PAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMP-E 738

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K+ I+W+++++GY  HG G +A+ L+  M  LG  P+ +T VGVLSAC   GL++EG++ 
Sbjct: 739 KNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKY 798

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + S+   + + P  E  ACVVD+LGR+G L RA  F++ MP++P   +   L+SA ++H 
Sbjct: 799 FQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHK 858

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N ++ + A   L++LEP++ + YV LSN+YA + +W      R MMKDRG+KK PG SWI
Sbjct: 859 NIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWI 918

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            ++   H F   D+ HP    IYE L DL
Sbjct: 919 EVNNSVHAFFAGDQKHPNVDKIYEYLRDL 947



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 191/409 (46%), Gaps = 40/409 (9%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           K+ +Q H  +L  G     +V   L+T Y+  G    ++ VFN++  +D   YNSLI+G 
Sbjct: 288 KVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGL 347

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            +    ++ALELF  M    + PD  T+A++      +  L VG   H  +IK G   D+
Sbjct: 348 SQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDI 407

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           IL  +L+ +YVKC         F      NV  WNV                        
Sbjct: 408 ILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNV------------------------ 443

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
                     M+  Y    +L+E+  +F +MQ++  IEPN+ +  S+L TCSSL  +  G
Sbjct: 444 ----------MLVAYGLLDNLNESFKIFTQMQMEG-IEPNQFTYPSILRTCSSLRAVDLG 492

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           +QIH   ++     +V + + LIDMY+K G LD A ++F      KD ++W+++++GY  
Sbjct: 493 EQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQ 551

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY-NSVINTYRIKPTT 395
           H K  EA+ L+ +M   G   D I     +SAC     +N+G +I+  + ++ Y      
Sbjct: 552 HEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGY--SDDL 609

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            +   +V +  R G++  A      +  + + S W +L+S     G+ E
Sbjct: 610 SVGNALVSLYARCGKVRDAYFAFDKIFSKDNIS-WNSLISGFAQSGHCE 657



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 205/456 (44%), Gaps = 46/456 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H +IL +G  +   +  +L+  Y   G    +  VF+ +  + +  +N +++ +V     
Sbjct: 91  HGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMA 150

Query: 103 NEALELFSNMYYSNVSPDDFTLATISK-LSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
              L LF  M    V PD+ T A + +   G     +    IH  +I  G+   + + N 
Sbjct: 151 GRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNP 210

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+ +Y K G                                   +  +++VFD +++R+ 
Sbjct: 211 LIDLYFKNG----------------------------------FLNSAKKVFDGLQKRDS 236

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            +W AM++G  Q+G  +EA++LF +M     + P      SVL  C+ +     G+Q+HG
Sbjct: 237 VSWVAMLSGLSQSGCEEEAVLLFCQMHTSG-VYPTPYIFSSVLSACTKVEFYKVGEQLHG 295

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
             +++  + +  +CNAL+ +YS+ G+   A +VF ++   +D ++++S++SG    G   
Sbjct: 296 LVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVF-NAMLQRDEVSYNSLISGLSQQGYSD 354

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           +A+ L+ KM     KPD +T+  +LSAC   G +  G + ++  I    +     +   +
Sbjct: 355 KALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKA-GMSSDIILEGAL 413

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE-- 459
           +D+  +   +  A +F  +   E +  +W  ++   V +G  +  + ++K   Q++ E  
Sbjct: 414 LDLYVKCSDIKTAHEFFLSTETE-NVVLWNVML---VAYGLLDNLNESFKIFTQMQMEGI 469

Query: 460 --NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
             N   Y S+    +S R  D   ++ T +   G +
Sbjct: 470 EPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQ 505



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 5/216 (2%)

Query: 231 YVQNGDLDEA-LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           Y  + D  EA  + FL +  +  +  N  + + +L  C S    S G ++HG  ++    
Sbjct: 41  YAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFC 100

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL-LYN 348
            +V LC  L+D+Y   G LD A  VF++    +    W+ ++  + + GK    VL L+ 
Sbjct: 101 AEVVLCERLMDLYIAFGDLDGAVTVFDEMPV-RPLSCWNKVLHRF-VAGKMAGRVLGLFR 158

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
           +M+    KPD  T  GVL  CG   +    +E  ++   T+  + +  +C  ++D+  + 
Sbjct: 159 RMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKN 218

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           G L+ A      +    S S W A++S     G  E
Sbjct: 219 GFLNSAKKVFDGLQKRDSVS-WVAMLSGLSQSGCEE 253


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/491 (35%), Positives = 277/491 (56%), Gaps = 26/491 (5%)

Query: 45  QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
           Q+    H+S   +   L+ A    G+  +++ +F+ +  +DV  + ++++GY +     E
Sbjct: 137 QMPERNHVSYTVLLGGLLDA----GRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV---DVILANS 161
           A  LF  M   NV      ++  + +SG  ++  V      L+ K+  V+   + +   +
Sbjct: 193 ARALFDEMPKRNV------VSWTAMISGYAQNGEVN-----LARKLFEVMPERNEVSWTA 241

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           ++  Y++ G   +   LF+ MP+  V + N  + G    G   +V  ++ VF++M+ R+ 
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG---MVDAAKTVFEKMRERDD 298

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
             W+AMI  Y QN  L EAL  F EM  +  + PN  S++S+L  C++L  L  G+++H 
Sbjct: 299 GTWSAMIKAYEQNEFLMEALSTFREMLWRG-VRPNYPSVISILTVCAALAVLDYGREVHA 357

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN-KDAITWSSIVSGYGLHGKG 340
             +R   + DV   +ALI MY KCG+LD A+RVF   +F  KD + W+S+++GY  HG G
Sbjct: 358 AMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFH--TFEPKDIVMWNSMITGYAQHGLG 415

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            +A+ +++ M   G  PD IT +G L+AC  +G + EG EI+NS+     I+P  E  +C
Sbjct: 416 EQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSC 475

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+LGR+G ++ A D IK MPVEP   IWGAL+ A  MH N+E+ ++A K L++LEP N
Sbjct: 476 MVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGN 535

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK-AHPC 519
              YV LS++Y S  RW+  +++R  +  R L KSPGCSWI    + H F+  D  AHP 
Sbjct: 536 AGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPE 595

Query: 520 SVSIYEMLDDL 530
             +I  +L+ L
Sbjct: 596 HAAILRILEKL 606



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 198/436 (45%), Gaps = 37/436 (8%)

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           I   A  G    ++  F ++  +    YN+L+ GY +N   + AL LF  M   +++  +
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYN 83

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
             ++ +S     + D    +        I F   V+   SL+  YV+ G  ++ + LF +
Sbjct: 84  ALISGLSLRRQTLPDAAAAL------ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQ 137

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           MP+RN  S+ V + G   +G    V  +RR+FD+M  R+V AWTAM++GY Q G + EA 
Sbjct: 138 MPERNHVSYTVLLGGLLDAGR---VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 242 VLFLEMQLKDRIEPNKV--------------SLVSVLPT------CSSLIGLSGGKQIHG 281
            LF EM  ++ +    +               L  V+P        + L+G      +  
Sbjct: 195 ALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVED 254

Query: 282 FA--IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
            A        H V+ CNA++  + + G +D A+ VFE     +D  TWS+++  Y  +  
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMR-ERDDGTWSAMIKAYEQNEF 313

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+  + +M+  G +P+  +++ +L+ C    +++ G E++ +++          + A
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSA 373

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            ++ M  + G LD+A     T   EP   + W ++++    HG  E Q L     ++L  
Sbjct: 374 -LITMYIKCGNLDKAKRVFHTF--EPKDIVMWNSMITGYAQHGLGE-QALGIFHDMRLAG 429

Query: 459 ENPSNYVSLSNLYASS 474
            +P     +  L A S
Sbjct: 430 MSPDGITYIGALTACS 445



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/348 (20%), Positives = 150/348 (43%), Gaps = 52/348 (14%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+ ++   + G        F+ MP R   S+N  ++G+  +    L   +  +F +M  R
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRN---RLPDAALGLFRRMPSR 77

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG---G 276
           ++ ++ A+I+G                + L+ +  P+  + ++ +P   S++  +    G
Sbjct: 78  DLASYNALISG----------------LSLRRQTLPDAAAALASIPFPPSVVSFTSLLRG 121

Query: 277 KQIHGF---AIR-----KELNH--DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
              HG    AIR      E NH     L   L+D     G ++ ARR+F D   ++D + 
Sbjct: 122 YVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLD----AGRVNEARRLF-DEMPDRDVVA 176

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++SGY   G+  EA  L+++M     K ++++   ++S   ++G +N   +++  + 
Sbjct: 177 WTAMLSGYCQAGRITEARALFDEM----PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP 232

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
               +  T  +   +     +AG ++ A +    MP  P      A  +  V  G   M 
Sbjct: 233 ERNEVSWTAMLVGYI-----QAGHVEDAAELFNAMPEHPV----AACNAMMVGFGQRGMV 283

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSR-RWDAVAELRTMMKDRGLK 493
           D A     ++   +   + ++   Y  +    +A++  R M+  RG++
Sbjct: 284 DAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLW-RGVR 330



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           LS+ R         NY S  V   L V A    L   ++ H+ +L      + F  + LI
Sbjct: 318 LSTFREMLWRGVRPNYPS--VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALI 375

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
           T Y  CG   +++ VF++ + KD+ ++NS+I GY ++    +AL +F +M  + +SPD  
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI 435

Query: 123 TLA---TISKLSGEIKD 136
           T     T    +G++K+
Sbjct: 436 TYIGALTACSYTGKVKE 452


>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1251

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 189/522 (36%), Positives = 277/522 (53%), Gaps = 45/522 (8%)

Query: 20   SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
            S TV   +Q ++  +SLKL K  H+  + LG      VS   I+AY  CG    ++LVF 
Sbjct: 749  SVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYGKCGDLDSAKLVFE 808

Query: 80   SIQHKD--VYLYNSLINGYVKNHGHNEALELFSN---MYYSNVSPDDFTLATISKLSGEI 134
            +I   D  V  +NS+   +       EA + F +   M      PD  T   ++      
Sbjct: 809  AIDRGDRTVVSWNSVFKAFAV---FGEAFDAFGHYRLMLRDEFKPDLSTFINLAASCQNP 865

Query: 135  KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
            + L  G LIH  +I +G   D+   N+ +SMY K G    C                   
Sbjct: 866  QTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSG--DSC------------------- 904

Query: 195  SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
                          +R +FD M  R   +WT MI+GY + GD+DEAL LF  M  K  + 
Sbjct: 905  -------------SARLLFDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAM-AKTGVN 950

Query: 255  PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD-VSLCNALIDMYSKCGSLDCARR 313
            P+ V+L+S++  C     L  GK I G A       D V +CNALIDMYSKCGS+D AR 
Sbjct: 951  PDLVTLLSLISGCGKFGSLEIGKWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARD 1010

Query: 314  VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
            +F+++S  K  +TW+++++GY L+G   EA+ L++KM+ L  KP+ IT + VL AC  SG
Sbjct: 1011 IFDNTS-EKTMVTWTTMIAGYALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAHSG 1069

Query: 374  LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
             + +G E ++ +   Y I P  +  +C+VD+LGR G+LD AL+ I  M  +P   IWGAL
Sbjct: 1070 SLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLDEALELIHNMSAKPDAGIWGAL 1129

Query: 434  VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493
            +SA  +H N ++ + A  SL  LEP+  + YV +SN+YA++  WD  A +R+MMK   +K
Sbjct: 1130 LSACKIHRNVKIAEQAADSLFNLEPQMAAPYVEMSNIYAAAGMWDGFARIRSMMKLWNIK 1189

Query: 494  KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            K PG S I ++GK H F+V ++ H  + +IY  L+ L L  R
Sbjct: 1190 KYPGESVIQVNGKNHTFTVGERGHMENEAIYSTLNGLSLFAR 1231



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 151/358 (42%), Gaps = 38/358 (10%)

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           V  +N  +   V  +   E+L LF  M      P++FT   ++K    +  +    ++H 
Sbjct: 613 VNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHT 672

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             IK  F  DV +  + + M+VKC        +F+ MP                      
Sbjct: 673 HLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPV--------------------- 711

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                        R+   W AM++G+ Q+G  D+   LF EM+L D I P+ V++++++ 
Sbjct: 712 -------------RDATTWNAMLSGFCQSGHTDKVFSLFREMRL-DEIPPDSVTVMTLIQ 757

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDA 324
           + S    L   K +H F IR  ++   ++ N  I  Y KCG LD A+ VFE     ++  
Sbjct: 758 SASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYGKCGDLDSAKLVFEAIDRGDRTV 817

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           ++W+S+   + + G+  +A   Y  M+    KPD+ T + + ++C     + +G  I++ 
Sbjct: 818 VSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIHSH 877

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            I+        E     + M  ++G    A      MP     S W  ++S     G+
Sbjct: 878 AIH-LGTDQDIEAINTFISMYSKSGDSCSARLLFDIMPSRTCVS-WTVMISGYAEKGD 933



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 13/215 (6%)

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
           SL+ R  + F  +   +V AW   +   V   D  E+L+LF EM+ +   EPN  +   V
Sbjct: 598 SLIHRRLKCFPGLS--SVNAWNFQVREAVNRNDPVESLLLFREMK-RGGFEPNNFTFPFV 654

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
              C+ L  +   + +H   I+     DV +  A +DM+ KC SLD A +VFE     +D
Sbjct: 655 AKACARLAYIGYCEMVHTHLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPV-RD 713

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
           A TW++++SG+   G   +   L+ +M      PD +T++ ++    +S    + L++  
Sbjct: 714 ATTWNAMLSGFCQSGHTDKVFSLFREMRLDEIPPDSVTVMTLI----QSASFEKSLKLLK 769

Query: 384 SVINTYRIKPTTEICACV----VDMLGRAGQLDRA 414
            V++ + I+   ++ A V    +   G+ G LD A
Sbjct: 770 -VMHAFGIRLGVDLQATVSNTWISAYGKCGDLDSA 803


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/500 (32%), Positives = 276/500 (55%), Gaps = 36/500 (7%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H  +L  G  S+ FVS  LI  Y+  G+   +Q+VF+ ++ +D+  +NS+I  Y +N+  
Sbjct: 245 HLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDP 304

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANS 161
           + AL  F  M    + PD  T+ +++ +  ++ D  +   I G  I+  ++  DV++ N+
Sbjct: 305 STALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNA 364

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L++MY K G +  C                                 +  VFDQ+ R++ 
Sbjct: 365 LVNMYAKLG-YMNC---------------------------------AHTVFDQLPRKDT 390

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            +W  ++ GY QNG   EA+  +  M+      PN+ + VS++P  S +  L  G +IH 
Sbjct: 391 ISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHA 450

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
             I+  L  DV +   LID+Y KCG L+ A  +F +   +  ++ W++I++  G+HG+G 
Sbjct: 451 KLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDT-SVPWNAIIASLGIHGRGE 509

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           EA+ L+  M+    K D IT V +LSAC  SGL++EG + ++ +   Y IKP+ +   C+
Sbjct: 510 EALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCM 569

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           VD+LGRAG L++A + ++ MP++P  SIWGAL+SA  ++GN+E+  LA   L++++ EN 
Sbjct: 570 VDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENV 629

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
             YV LSN+YA++ +W+ V ++R++ +DRGL+K+PG S + +  K   F   ++ HP   
Sbjct: 630 GYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYT 689

Query: 522 SIYEMLDDLILIMRGAAASP 541
            IY+ L  L   M+     P
Sbjct: 690 EIYKELKVLSAKMKSLGYVP 709



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 144/533 (27%), Positives = 252/533 (47%), Gaps = 84/533 (15%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
           TK+ H+ +L  G   N  +STKLI  Y   G  + S+  F+ I  K+++ +NS+I+ YV+
Sbjct: 38  TKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVR 97

Query: 99  NHGHNEAL----ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
              ++EA+    +LFS     ++ PD +T   I K    + D   G  +H    K+GF  
Sbjct: 98  FGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFED 154

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF--SLVVRSRRV 212
           DV +A SL+ +Y + G       +F +MP ++VGSWN  ISG   +G+   +L V +R  
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 213 FDQMK----------------------------------RRNVYAWTAMINGYVQNGDLD 238
            + +K                                    +V+   A+IN Y + G L 
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 239 EALVLFLEMQLKDR------------------------------IEPNKVSLVSVLPTCS 268
           +A ++F +M+++D                               I P+ +++VS+    S
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 269 SLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
            L      + I GF IR+E L+ DV + NAL++MY+K G ++CA  VF D    KD I+W
Sbjct: 335 QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVF-DQLPRKDTISW 393

Query: 328 SSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           +++V+GY  +G   EA+  YN M  C  + P+  T V ++ A    G + +G++I+  +I
Sbjct: 394 NTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI 453

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
               +     +  C++D+ G+ G+L+ A+     +P + S   W A++++  +HG  E  
Sbjct: 454 KN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEA 511

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE----LRTMMKDRGLKKS 495
              +K +  L     +++++  +L ++      V E       M K+ G+K S
Sbjct: 512 LQLFKDM--LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPS 562



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 158/373 (42%), Gaps = 69/373 (18%)

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           ++N    +H L +  G   +++L+  L+++YV  G  S   + FD + ++N+ SWN  IS
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIIS 93

Query: 196 GHASSGD-----------FSL----------------------VVRSRR----VFDQMKR 218
            +   G            FS+                      +V  ++    VF     
Sbjct: 94  AYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFE 153

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD--------------------------- 251
            +V+   ++++ Y + G LD A  +F++M +KD                           
Sbjct: 154 DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRM 213

Query: 252 ---RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
               ++ + +++ S+LP C+    +  G  IH   ++  L+ DV + NALI+MYSK G L
Sbjct: 214 KGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRL 273

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
             A+ VF+     +D ++W+SI++ Y  +     A+  +  M   G +PD++T+V + S 
Sbjct: 274 QDAQMVFDQMEV-RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSI 332

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
             +         I   VI    +     I   +V+M  + G ++ A      +P + + S
Sbjct: 333 FSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTIS 392

Query: 429 IWGALVSASVMHG 441
            W  LV+    +G
Sbjct: 393 -WNTLVTGYTQNG 404


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 168/510 (32%), Positives = 280/510 (54%), Gaps = 38/510 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R+++  ++ H+ ++   ++   ++ST+LI  Y  C     ++ VF+ ++ ++V  + ++I
Sbjct: 24  RAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMI 83

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +GY +    +EAL LF  M  S+  P++FT AT+           +G  IH    K  + 
Sbjct: 84  SGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYE 143

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
             + + +SL+ MY K G+  E   +F+ +P+R+V S                        
Sbjct: 144 NHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVS------------------------ 179

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                      TA+I+GY Q G  +EAL LF  +Q ++ +  N V+  S+L   S L  L
Sbjct: 180 ----------CTAIISGYAQLGLDEEALELFCRLQ-REGMSSNYVTYASLLTALSGLAAL 228

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GKQ+H   +R EL   V L N+LIDMYSKCG+L+ AR++F +    +  I+W++++ G
Sbjct: 229 DHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPV-RTVISWNAMLVG 287

Query: 334 YGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTY-RI 391
           Y  HGKG E V L+  M      KPD +T + VLS C   GL ++GLE+++ ++N    I
Sbjct: 288 YSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEI 347

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           +   E   CV+D+LGRAG+++ A + IK MP EP+ +IWG+L+ A  +H N+ + +    
Sbjct: 348 EAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGC 407

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            L+++EPEN  NYV LSNLYAS+ RW+ V  +R +M ++ + K PG SWI +    H F 
Sbjct: 408 RLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFY 467

Query: 512 VADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            +D++HP    ++  + +L++  + +   P
Sbjct: 468 ASDRSHPRREEVFLKVRELLVKFKESGYVP 497



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 51/329 (15%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            +T ATV   L         +L +Q HS I    + ++ FV + L+  YA  G+  +++ 
Sbjct: 111 EFTFATV---LSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARG 167

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI-SKLSGEIK 135
           VF  +  +DV    ++I+GY +     EALELF  +    +S +  T A++ + LSG + 
Sbjct: 168 VFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSG-LA 226

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
            L+ G  +H   ++      V+L NSL+ MY KCG  +    +F+ MP R V SWN    
Sbjct: 227 ALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWN---- 282

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                                         AM+ GY ++G   E + LF  M+ +++++P
Sbjct: 283 ------------------------------AMLVGYSKHGKGIEVVKLFKLMREENKVKP 312

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-------NHDVSLCNALIDMYSKCGSL 308
           + V+ ++VL  CS      GG +  G  +  E+          +     +ID+  + G +
Sbjct: 313 DSVTFLAVLSGCS-----HGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRV 367

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           + A  + +   F   A  W S++    +H
Sbjct: 368 EEAFELIKKMPFEPTAAIWGSLLGACRVH 396



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 106/210 (50%), Gaps = 9/210 (4%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           +L  C +   +  G+++H   I+      V L   LI +Y+KC  L CAR VF D    +
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVF-DEMRER 74

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC-GRSGLINEGLEI 381
           + ++W++++SGY   G   EA+ L+ +M+   ++P+  T   VLS+C G SG    G +I
Sbjct: 75  NVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGF-ELGRQI 133

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++ +      +    + + ++DM  +AG++  A    + +P     S   A++S     G
Sbjct: 134 HSHIFKR-NYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSC-TAIISGYAQLG 191

Query: 442 NSEMQDLAYKSLIQLEPEN-PSNYVSLSNL 470
              + + A +   +L+ E   SNYV+ ++L
Sbjct: 192 ---LDEEALELFCRLQREGMSSNYVTYASL 218


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 170/512 (33%), Positives = 280/512 (54%), Gaps = 8/512 (1%)

Query: 33  HRSLKLTKQSHSQILSLGHISNP-FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           H S    +  H   L  GH++    V   L+  YA       ++ +F+ +  +DV  + +
Sbjct: 153 HHSPSGGEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTT 212

Query: 92  LINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           L++GY +    +EA  +F  M  +  + P++ TL  +    G++  L  G +++      
Sbjct: 213 LVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADG 272

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G    V L N+L+ M+ K G  +    +FD M  ++V SW   ++ +A  GD      + 
Sbjct: 273 GVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLE---SAA 329

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           R+FD M RRN  +W+ MI  Y Q    +EA+ LF  M +++ +EP    LVSVL  C+ L
Sbjct: 330 RLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAM-IEEGVEPINAGLVSVLSACAQL 388

Query: 271 IGLSGGKQIH-GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
             L  G+ I+  + I  +    V+L NA ID+Y+KCG  D A ++F + +  ++ ++W+S
Sbjct: 389 GCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMA-ERNVVSWNS 447

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++  + +HG+  E + L+ ++      PD IT +G+LSAC  SGL++EG   +  +   Y
Sbjct: 448 MIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIY 507

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I+P +E  AC++D+LG+ G L+ A +  K MP+E   + WGAL++A  M+GN E+ + A
Sbjct: 508 GIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFA 567

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
              L+QL P +   YV +S +YAS  +WD V  LR +M++RG+KK+PGCS I + GK H 
Sbjct: 568 ADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEVDGKFHE 627

Query: 510 FSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           F VAD +H  S  IY  L ++   ++     P
Sbjct: 628 FLVADVSHVHSEDIYAALKNIYFHLKWEGYVP 659


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 168/518 (32%), Positives = 276/518 (53%), Gaps = 34/518 (6%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           F    +++AY+  G     + VF+ +   D   YN++I G+  N   ++ALE F  M   
Sbjct: 90  FSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEE 149

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
                D+T  ++     ++ D+  G  IHG  +       V + N+L +MY KCG   + 
Sbjct: 150 GFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQA 209

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR--------------------------- 208
             LFD M  +NV SWN  ISG+  +G      +                           
Sbjct: 210 RWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQC 269

Query: 209 -----SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                + + F ++K ++   WT M+ G  QNG  ++AL+LF EM L++ + P+  ++ SV
Sbjct: 270 GYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLEN-VRPDNFTISSV 328

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           + +C+ L  L  G+ +HG A+   ++HD+ + +AL+DMYSKCG    A  VF+     ++
Sbjct: 329 VSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFK-RMLTRN 387

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            I+W+S++ GY  +GK  EA+ LY +M+    KPD IT VGVLSAC  +GL+  G   + 
Sbjct: 388 VISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFY 447

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           S+   + + PT +  +C++++LGRAG +D+A+D IK+M  EP+  IW  L+S   ++ + 
Sbjct: 448 SISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDV 507

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
              ++A + L +L+P N   Y+ LSN+YA+  RW  VA +R++MK+  +KK    SWI I
Sbjct: 508 NNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEI 567

Query: 504 HGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             + H F   D+ H  +  IYE L+ LI  ++ +  +P
Sbjct: 568 DNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTP 605



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 149/271 (54%), Gaps = 10/271 (3%)

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            D  L N L+ +Y K G  S+  +LFD+M +R+V SWN  +S ++ SG+   V   R VF
Sbjct: 56  TDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGN---VEDLRAVF 112

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           DQM   +  ++  +I G+  NG   +AL  F+ MQ ++  E    + VSVL  CS L+ +
Sbjct: 113 DQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQ-EEGFESTDYTHVSVLHACSQLLDI 171

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GKQIHG  +   L   V + NAL +MY+KCG+LD AR +F D   NK+ ++W+S++SG
Sbjct: 172 KRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLF-DRMVNKNVVSWNSMISG 230

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y  +G+      L+ +M   G  PD +TI  +LSA  + G I+E  + +  +    ++  
Sbjct: 231 YLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCW 290

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
           TT +  C      + G+ + AL   + M +E
Sbjct: 291 TTMMVGC-----AQNGKEEDALLLFREMLLE 316



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 155/334 (46%), Gaps = 44/334 (13%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           L  AR  F  + ++N  S  + +  +LQ        KL      ++ S G + +    + 
Sbjct: 206 LDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKL----FCEMQSSGLMPDQVTISN 261

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +++AY  CG   ++   F  I+ KD   + +++ G  +N    +AL LF  M   NV PD
Sbjct: 262 ILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPD 321

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
           +FT++++      +  L  G  +HG ++  G   D++++++L+ MY KCG+ ++   +F 
Sbjct: 322 NFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFK 381

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            M  RNV SWN                                  +MI GY QNG   EA
Sbjct: 382 RMLTRNVISWN----------------------------------SMILGYAQNGKDLEA 407

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK--ELNHDVSLCNAL 298
           L L+ EM L + ++P+ ++ V VL  C    GL    Q + ++I K   +N      + +
Sbjct: 408 LALYEEM-LHENLKPDNITFVGVLSACMH-AGLVERGQGYFYSISKIHGMNPTFDHYSCM 465

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           I++  + G +D A  + +  +F  + + WS+++S
Sbjct: 466 INLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLS 499



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 183/430 (42%), Gaps = 93/430 (21%)

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
           Q+ +  +  Q  D +L N L++ Y K+   ++A +LF  M   +V   +  L+  SK SG
Sbjct: 45  QTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSK-SG 103

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS--- 189
            ++DL    +   +S+      D +  N++++ +   G  S+ L  F  M +    S   
Sbjct: 104 NVEDLRA--VFDQMSVH-----DAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDY 156

Query: 190 ------------------------------------WNVRISGHASSGDFSLVVRSRRVF 213
                                               WN   + +A  G      ++R +F
Sbjct: 157 THVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALD---QARWLF 213

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D+M  +NV +W +MI+GY+QNG  +    LF EMQ    + P++V++ ++L         
Sbjct: 214 DRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQ-SSGLMPDQVTISNILSA------- 265

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
                                       Y +CG +D A + F +    KD + W++++ G
Sbjct: 266 ----------------------------YFQCGYIDEACKTFREIK-EKDKVCWTTMMVG 296

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
              +GK  +A+LL+ +M+    +PD  TI  V+S+C R   + +G  ++   +  + +  
Sbjct: 297 CAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAV-IFGVDH 355

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA-YKS 452
              + + +VDM  + G+   A    K M      S W +++     +G  +++ LA Y+ 
Sbjct: 356 DLLVSSALVDMYSKCGETADAWIVFKRMLTRNVIS-WNSMILGYAQNG-KDLEALALYEE 413

Query: 453 LIQ--LEPEN 460
           ++   L+P+N
Sbjct: 414 MLHENLKPDN 423


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 164/504 (32%), Positives = 276/504 (54%), Gaps = 38/504 (7%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           +L +Q H  +L      +P +   LI  Y+  G   +++ VF+  + +D+  + ++I+GY
Sbjct: 325 RLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGY 384

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
                  +ALE +  M    + PD+ T+A +      + +L++GM +H ++ + G V   
Sbjct: 385 ENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYS 444

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           I+ANSL+ MY KC    +C++                              ++  +F   
Sbjct: 445 IVANSLIDMYAKC----KCID------------------------------KALEIFHST 470

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
             +N+ +WT++I G   N    EAL  F EM    R++PN V+LV VL  C+ +  L+ G
Sbjct: 471 LEKNIVSWTSIILGLRINNRCFEALFFFREMI--RRLKPNSVTLVCVLSACARIGALTCG 528

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K+IH  A+R  ++ D  + NA++DMY +CG ++ A + F   S + +  +W+ +++GY  
Sbjct: 529 KEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQF--FSVDHEVTSWNILLTGYAE 586

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
            GKG  A  L+ +MV     P+ +T + +L AC RSG++ EGLE +NS+   Y I P  +
Sbjct: 587 RGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLK 646

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             ACVVD+LGR+G+L+ A +FI+ MP++P P++WGAL+++  +H + E+ +LA +++ Q 
Sbjct: 647 HYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQD 706

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           +  +   Y+ LSNLYA + +WD VAE+R MM+  GL   PGCSW+ + G  H F  +D  
Sbjct: 707 DTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNF 766

Query: 517 HPCSVSIYEMLDDLILIMRGAAAS 540
           HP    I  +L+     M+ A   
Sbjct: 767 HPQIKEINALLERFYKKMKEAGVE 790



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 193/388 (49%), Gaps = 39/388 (10%)

Query: 47  LSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEAL 106
           +S+ H+S   +   L++ +   G    +  VF  ++ ++++ +N L+ GY K    +EAL
Sbjct: 134 ISMSHLSLQ-LGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEAL 192

Query: 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
           +L+  M +  V PD +T   + +  G + +L  G  IH   I+ GF  DV + N+L++MY
Sbjct: 193 DLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMY 252

Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
           VKCG                                   V  +R VFD+M  R+  +W A
Sbjct: 253 VKCGD----------------------------------VNTARLVFDKMPNRDRISWNA 278

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           MI+GY +NG   E L LF  M +K  ++P+ +++ SV+  C  L     G+QIHG+ +R 
Sbjct: 279 MISGYFENGVCLEGLRLF-GMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRT 337

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
           E   D S+ N+LI MYS  G ++ A  VF  +   +D ++W++++SGY       +A+  
Sbjct: 338 EFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTEC-RDLVSWTAMISGYENCLMPQKALET 396

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           Y  M   G  PD ITI  VLSAC     ++ G+ ++  V     +   + +   ++DM  
Sbjct: 397 YKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLH-EVAKQKGLVSYSIVANSLIDMYA 455

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +   +D+AL+   +  +E +   W +++
Sbjct: 456 KCKCIDKALEIFHST-LEKNIVSWTSII 482



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 204/436 (46%), Gaps = 41/436 (9%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           ++ H  ++  G  S+  V   LIT Y  CG    ++LVF+ + ++D   +N++I+GY +N
Sbjct: 227 REIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFEN 286

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               E L LF  M    V PD  T+ ++      + D  +G  IHG  ++  F  D  + 
Sbjct: 287 GVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIH 346

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           NSL+ MY   G   E   +F     R++ SW                             
Sbjct: 347 NSLIPMYSSVGLIEEAETVFSRTECRDLVSW----------------------------- 377

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
                TAMI+GY +N  + +  +   +M   + I P+++++  VL  CS L  L  G  +
Sbjct: 378 -----TAMISGY-ENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNL 431

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H  A +K L     + N+LIDMY+KC  +D A  +F  S+  K+ ++W+SI+ G  ++ +
Sbjct: 432 HEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFH-STLEKNIVSWTSIILGLRINNR 490

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+  + +M+    KP+ +T+V VLSAC R G +  G EI+   + T  +     +  
Sbjct: 491 CFEALFFFREMI-RRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRT-GVSFDGFMPN 548

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            ++DM  R G+++ A  + +   V+   + W  L++     G        ++ +++    
Sbjct: 549 AILDMYVRCGRMEYA--WKQFFSVDHEVTSWNILLTGYAERGKGAHATELFQRMVE-SNV 605

Query: 460 NPSNYVSLSNLYASSR 475
           +P+    +S L A SR
Sbjct: 606 SPNEVTFISILCACSR 621



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 4/207 (1%)

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G+LD A+  +L+   + RI     + V+++  C        G +++ +      +  + L
Sbjct: 85  GNLDRAMS-YLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQL 143

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            NAL+ M+ + G+L  A  VF      ++  +W+ +V GY   G   EA+ LY++M+ +G
Sbjct: 144 GNALLSMFVRFGNLVDAWYVFGRME-KRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVG 202

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
            KPD+ T   VL  CG    +  G EI+  VI  Y  +   ++   ++ M  + G ++ A
Sbjct: 203 VKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIR-YGFESDVDVVNALITMYVKCGDVNTA 261

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHG 441
                 MP     S W A++S    +G
Sbjct: 262 RLVFDKMPNRDRIS-WNAMISGYFENG 287



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 120/297 (40%), Gaps = 35/297 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   K+ H+  L  G   + F+   ++  Y  CG+   +   F 
Sbjct: 509 SVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFF 568

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           S+ H +V  +N L+ GY +      A ELF  M  SNVSP++ T  +I            
Sbjct: 569 SVDH-EVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSR-----S 622

Query: 140 GMLIHGL----SIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMPQR-NVGSW-- 190
           GM+  GL    S+K  + +   L +   ++ +  + GK  E      +MP + +   W  
Sbjct: 623 GMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGA 682

Query: 191 ---NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
              + RI  H   G+ +    +  +F Q    +V  +  + N Y  NG  D+   +   M
Sbjct: 683 LLNSCRIHHHVELGELA----AENIF-QDDTTSVGYYILLSNLYADNGKWDKVAEVRKMM 737

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
           +    I         V P C S + + G   +H F      +  +   NAL++ + K
Sbjct: 738 RQNGLI---------VDPGC-SWVEVKG--TVHAFLSSDNFHPQIKEINALLERFYK 782


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 269/516 (52%), Gaps = 37/516 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   +T ++L+  K  HS I   GH S+  +   LI+ YA CG   +++ +F ++  +D+
Sbjct: 337 LNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDL 396

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N++I GY +     EA+ L+  M    V P   T   +            G +IH  
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            ++ G   +  LAN+LM+MY +CG   E  N+F+    R+V SWN  I+GHA        
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA-------- 508

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                                     Q+G  + A  LF EMQ  + +EP+ ++  SVL  
Sbjct: 509 --------------------------QHGSYETAYKLFQEMQ-NEELEPDNITFASVLSG 541

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C +   L  GKQIHG      L  DV+L NALI+MY +CGSL  AR VF  S  ++D ++
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFH-SLQHRDVMS 600

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-PDIITIVGVLSACGRSGLINEGLEIYNSV 385
           W++++ G    G+  +A+ L+ +M   G + PD  T   +LSAC  +GL+ EG +I++S+
Sbjct: 601 WTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSM 660

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
            + Y + PT E   C+V +LGRA +   A   I  MP  P  ++W  L+ A  +HGN  +
Sbjct: 661 ESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIAL 720

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            + A  + ++L   NP+ Y+ LSN+YA++ RWD VA++R +M+ RG++K PG SWI +  
Sbjct: 721 AEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 780

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             H F  AD++HP +  IY  L  L + M  A   P
Sbjct: 781 IIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFP 816



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 133/509 (26%), Positives = 214/509 (42%), Gaps = 73/509 (14%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT    LQ     R L   K+ H+Q++  G   + F+S  LI  Y  C     +  VF  
Sbjct: 28  ATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +  +DV  +NSLI+ Y +     +A +LF  M  +   P+  T  +I        +L  G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS----- 195
             IH   IK G+  D  + NSL+SMY KCG       +F  +  R+V S+N  +      
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 196 ----------GHASSGDFSL----------VVRSRRVFDQMKR-----------RNVYAW 224
                     G  SS   S              +  + D+ KR            ++   
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 225 TAMINGYVQNGDLD-------------------------------EALVLFLEMQLKDRI 253
           TA++   V+ GD+D                               EA   +  M+  D +
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMR-SDGV 326

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
             N+ + +S+L  CS+   L  GK IH        + DV + NALI MY++CG L  AR 
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           +F  +   +D I+W++I++GY       EA+ LY +M   G KP  +T + +LSAC  S 
Sbjct: 387 LFY-TMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSS 445

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
              +G  I+  ++ +  IK    +   +++M  R G L  A +  +        S W ++
Sbjct: 446 AYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSM 503

Query: 434 VSASVMHGNSEMQDLAYKSLI--QLEPEN 460
           ++    HG+ E     ++ +   +LEP+N
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDN 532



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 157/338 (46%), Gaps = 39/338 (11%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           IH   ++ G   D+ L+N L++MYVKC                                 
Sbjct: 49  IHAQMVEAGVGPDIFLSNLLINMYVKCRS------------------------------- 77

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V+ + +VF +M RR+V +W ++I+ Y Q G   +A  LF EMQ    I PNK++ +S
Sbjct: 78  ---VLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYIS 133

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           +L  C S   L  GK+IH   I+     D  + N+L+ MY KCG L  AR+VF   S  +
Sbjct: 134 ILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGIS-PR 192

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D +++++++  Y       E + L+ +M   G  PD +T + +L A     +++EG  I+
Sbjct: 193 DVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIH 252

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG- 441
              +    +     +   +V M  R G +D A    K +  +    ++ AL++A   HG 
Sbjct: 253 KLTVEE-GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGI-ADRDVVVYNALIAALAQHGH 310

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
           N E  +  Y+        N + Y+S+ N  ++S+  +A
Sbjct: 311 NVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEA 348



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 149/358 (41%), Gaps = 47/358 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  H L   A   +    K  H  IL  G  SN  ++  L+  Y  CG   ++Q VF   
Sbjct: 433 TFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGT 492

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           Q +DV  +NS+I G+ ++  +  A +LF  M    + PD+ T A++       + L +G 
Sbjct: 493 QARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGK 552

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IHG   + G  +DV L N+L++MY++CG   +  N+F  +  R+V SW           
Sbjct: 553 QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSW----------- 601

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  TAMI G    G+  +A+ LF +MQ +    P+  +  
Sbjct: 602 -----------------------TAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFT 638

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS-- 319
           S+L  C+       G  + G+ I   +  +  +   +       G L  ARR  E  +  
Sbjct: 639 SILSACN-----HAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLI 693

Query: 320 ----FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV--GVLSACGR 371
               F  DA  W +++    +HG    A    N  + L ++   + I+   V +A GR
Sbjct: 694 NQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGR 751



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 4/162 (2%)

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           E ++ + V++L  C+    L   K+IH   +   +  D+ L N LI+MY KC S+  A +
Sbjct: 24  ETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VF++    +D I+W+S++S Y   G   +A  L+ +M   G  P+ IT + +L+AC    
Sbjct: 84  VFKEMP-RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 374 LINEGLEIYNSVINT-YRIKPTTEICACVVDMLGRAGQLDRA 414
            +  G +I++ +I   Y+  P  +    ++ M G+ G L RA
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQ--NSLLSMYGKCGDLPRA 182


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 163/500 (32%), Positives = 276/500 (55%), Gaps = 36/500 (7%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H  +L  G  S+ FVS  LI  Y+  G+   +Q+VF+ ++ +D+  +NS+I  Y +N+  
Sbjct: 245 HLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDP 304

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANS 161
           + AL  F  M    + PD  T+ +++ +  ++ D  +   I G  I+  ++  DV++ N+
Sbjct: 305 STALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNA 364

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L++MY K G +  C                                 +  VFDQ+ R++ 
Sbjct: 365 LVNMYAKLG-YMNC---------------------------------AHTVFDQLPRKDT 390

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            +W  ++ GY QNG   EA+  +  M+      PN+ + VS++P  S +  L  G +IH 
Sbjct: 391 ISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHA 450

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
             I+  L  DV +   LID+Y KCG L+ A  +F +   +  ++ W++I++  G+HG+G 
Sbjct: 451 KLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDT-SVPWNAIIASLGIHGRGE 509

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           EA+ L+  M+    K D IT V +LSAC  SGL++EG + ++ +   Y IKP+ +   C+
Sbjct: 510 EALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCM 569

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           VD+LGRAG L++A + ++ MP++P  SIWGAL+SA  ++GN+E+  LA   L++++ EN 
Sbjct: 570 VDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENV 629

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
             YV LSN+YA++ +W+ V ++R++ +DRGL+K+PG S + +  K   F   ++ HP   
Sbjct: 630 GYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYT 689

Query: 522 SIYEMLDDLILIMRGAAASP 541
            IY+ L  L   M+     P
Sbjct: 690 EIYKELKVLSAKMKSLGYVP 709



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 144/533 (27%), Positives = 252/533 (47%), Gaps = 84/533 (15%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
           TK+ H+ +L  G   N  +STKLI  Y   G  + S+  F+ I  K+++ +NS+I+ YV+
Sbjct: 38  TKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVR 97

Query: 99  NHGHNEAL----ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
              ++EA+    +LFS     ++ PD +T   I K    + D   G  +H    K+GF  
Sbjct: 98  FGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFED 154

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF--SLVVRSRRV 212
           DV +A SL+ +Y + G       +F +MP ++VGSWN  ISG   +G+   +L V +R  
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 213 FDQMK----------------------------------RRNVYAWTAMINGYVQNGDLD 238
            + +K                                    +V+   A+IN Y + G L 
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 239 EALVLFLEMQLKDR------------------------------IEPNKVSLVSVLPTCS 268
           +A ++F +M+++D                               I P+ +++VS+    S
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 269 SLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
            L      + I GF IR+E L+ DV + NAL++MY+K G ++CA  VF D    KD I+W
Sbjct: 335 QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVF-DQLPRKDTISW 393

Query: 328 SSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           +++V+GY  +G   EA+  YN M  C  + P+  T V ++ A    G + +G++I+  +I
Sbjct: 394 NTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI 453

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
               +     +  C++D+ G+ G+L+ A+     +P + S   W A++++  +HG  E  
Sbjct: 454 KN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEA 511

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE----LRTMMKDRGLKKS 495
              +K +  L     +++++  +L ++      V E       M K+ G+K S
Sbjct: 512 LQLFKDM--LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPS 562



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 158/373 (42%), Gaps = 69/373 (18%)

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           ++N    +H L +  G   +++L+  L+++YV  G  S   + FD + ++N+ SWN  IS
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIIS 93

Query: 196 GHASSGD-----------FSL----------------------VVRSRR----VFDQMKR 218
            +   G            FS+                      +V  ++    VF     
Sbjct: 94  AYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFE 153

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD--------------------------- 251
            +V+   ++++ Y + G LD A  +F++M +KD                           
Sbjct: 154 DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRM 213

Query: 252 ---RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
               ++ + +++ S+LP C+    +  G  IH   ++  L+ DV + NALI+MYSK G L
Sbjct: 214 KGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRL 273

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
             A+ VF+     +D ++W+SI++ Y  +     A+  +  M   G +PD++T+V + S 
Sbjct: 274 QDAQMVFDQMEV-RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSI 332

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
             +         I   VI    +     I   +V+M  + G ++ A      +P + + S
Sbjct: 333 FSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTIS 392

Query: 429 IWGALVSASVMHG 441
            W  LV+    +G
Sbjct: 393 -WNTLVTGYTQNG 404


>gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
 gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
          Length = 840

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 183/546 (33%), Positives = 296/546 (54%), Gaps = 40/546 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHS-QILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           T  T+  FL  SA    +   KQ H+  +LS   ++N  + + LI  Y+  G    ++LV
Sbjct: 281 TQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTN-ILGSSLINFYSKVGLVEDAELV 339

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F+ +  KD   +N L++GYV N   + AL+L   M   N+  D  TLA+I   + + ++L
Sbjct: 340 FSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRNL 399

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            +G   H   ++     DV +A+S++ MY KC K      +FD   +R++  WN  ++ +
Sbjct: 400 KLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECARRVFDATAKRDLIMWNTLLAAY 459

Query: 198 ASSG--------------------------------DFSLVVRSRRVFDQMKR----RNV 221
           A  G                                +   V +++  F +M+      N+
Sbjct: 460 AEQGHSGETLKLFYQMQLEGLPPNVISWNSVILGLLNKGKVDQAKDTFMEMQSLGICPNL 519

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
             WT +I G  QNG  DEA + F  M+ +  I+PN +S+ S+L  CS++  L  G+ IH 
Sbjct: 520 ITWTTLICGLAQNGLGDEAFLTFQSME-EAGIKPNSLSISSLLSACSTMASLPHGRAIHC 578

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           +  R EL+    +  +L++MY+KCGS++ A+RVF D    K+   +++++SGY LHG+  
Sbjct: 579 YITRHELSVSTPVLCSLVNMYAKCGSINQAKRVF-DMILKKELPVYNAMISGYALHGQAV 637

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           EA+ L+ ++     KPD IT   +LSACG +GL+ EGLE++  +++ ++I    E   C+
Sbjct: 638 EALSLFRRLKEECIKPDEITFTSILSACGHAGLVREGLELFIDMVSNHKIVAQAEHYGCL 697

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           V +L R+  LD AL  I  MP EP   I+G+L++A   H + E+++  ++ L++LEP+N 
Sbjct: 698 VSILSRSHNLDEALRIILGMPFEPDAFIFGSLLAACREHPDFELKERLFERLLKLEPDNS 757

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
            NYV+LSN YA++  WD  +++R +MK+R L K PG S I I  KTH F   DK+H  + 
Sbjct: 758 GNYVALSNAYAATGMWDEASKVRGLMKERSLSKIPGHSLIQIGNKTHVFFAGDKSHSRTK 817

Query: 522 SIYEML 527
            IY ML
Sbjct: 818 EIYMML 823



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 185/384 (48%), Gaps = 40/384 (10%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
            + S   R +   K  H+ ++ +G     +V+T L+  Y  CG   +++ VF+ I  K++
Sbjct: 188 FKASGALRWIGFGKSVHAYVVKMGLGGCIYVATSLLDMYGKCGLCEEAKKVFDKILEKNI 247

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NS+I  + +N  + EA+E F  M    V+P   TL++    S  +  ++ G   H L
Sbjct: 248 VAWNSMIVNFTQNGLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHAL 307

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           ++  G  +  IL +SL++ Y K G   +   +F EM +++  +WN+ +S           
Sbjct: 308 AVLSGLELTNILGSSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVS----------- 356

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                                  GYV NG +D AL L   MQ  + +  + V+L S++  
Sbjct: 357 -----------------------GYVHNGLVDRALDLCHVMQ-SENLRFDSVTLASIMAA 392

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
            +    L  GK+ H F +R  L  DV++ +++IDMY+KC  L+CARRVF D++  +D I 
Sbjct: 393 AADSRNLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECARRVF-DATAKRDLIM 451

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG----LEIY 382
           W+++++ Y   G   E + L+ +M   G  P++I+   V+      G +++     +E+ 
Sbjct: 452 WNTLLAAYAEQGHSGETLKLFYQMQLEGLPPNVISWNSVILGLLNKGKVDQAKDTFMEMQ 511

Query: 383 NSVINTYRIKPTTEICACVVDMLG 406
           +  I    I  TT IC    + LG
Sbjct: 512 SLGICPNLITWTTLICGLAQNGLG 535


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 169/488 (34%), Positives = 271/488 (55%), Gaps = 26/488 (5%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +I+ Y    +   ++ +F+ +  +D++ +N ++ GYV+N     A  LF  M      P+
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERM------PE 54

Query: 121 DFTLATISKLSGEIKDLNVGM---LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
              ++  + LSG  ++  V     + + + +K G     I  N L++ YV+ G+  +   
Sbjct: 55  RDIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNG-----ISWNGLLAAYVQNGRIEDAKR 109

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           LF+      + SWN  + G         V + R +FD M +R+  +W+AMI GY QNG  
Sbjct: 110 LFESKMDWTLVSWNCLMGG--------FVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCS 161

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
           +EAL  F+EMQ +D    N+ S    L TCS++  L  G+Q+H   ++        + NA
Sbjct: 162 EEALHFFVEMQ-RDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNA 220

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           L+ MY KCGS+D AR  F++    KD ++W++++ GY  HG G EA+ ++  M   G +P
Sbjct: 221 LLAMYCKCGSIDEARDAFQEI-LEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRP 279

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           D  T+V VL+AC  +GL+++G E + S+   Y I        C+VD+LGRAGQL+ A + 
Sbjct: 280 DDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNL 339

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
           +K MP EP  + WGAL+ AS +HGN+E+ + A + + ++EP N   Y+ LS LYA+S RW
Sbjct: 340 MKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRW 399

Query: 478 DAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLD--DLILIMR 535
               ++R  M+++G+KK PG SW+ +  K H F V D +HP +  IY  L+  DL L   
Sbjct: 400 SDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQE 459

Query: 536 GAAASPHL 543
           G  +S +L
Sbjct: 460 GYISSTNL 467



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 102/218 (46%), Gaps = 2/218 (0%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+L +Q H +++  G+ +  +V   L+  Y  CG   +++  F  I  KDV  +N++I+
Sbjct: 195 ALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIH 254

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG-MLIHGLSIKIGFV 153
           GY ++    EAL +F  M  + + PDD T+ ++         ++ G    + ++   G  
Sbjct: 255 GYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGIT 314

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             ++    ++ +  + G+  E  NL   MP + +  +W   +      G+  L  ++ ++
Sbjct: 315 AKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQI 374

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
             +M+  N   +  +   Y  +G   +A  + LEM+ K
Sbjct: 375 IFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNK 412


>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 180/534 (33%), Positives = 272/534 (50%), Gaps = 78/534 (14%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQ---SQLVFNSIQHKDVYLYNSLINGYVKN 99
           H QI+  G  S  FV   L+  Y  CG P +   ++ VF+ +  +DV  +NS+I  Y+ +
Sbjct: 128 HGQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSS 187

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
             +  A+ELF  M   NV                                       +  
Sbjct: 188 GDYTGAMELFEAMPERNV---------------------------------------VSW 208

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM-KR 218
           N+L++ + + G       +FD MP RN  SWN+ ISG+ASSGD   V  +R +FD+M ++
Sbjct: 209 NTLVAGFARVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGD---VEAARSMFDRMDQK 265

Query: 219 RNVYAWTAMINGYVQNGDLD-------------------------------EALVLFLEM 247
           ++V +WTAM++ Y + GDLD                               EAL  F  M
Sbjct: 266 KDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLM 325

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
            L+ R  P++ +LVSV+  C+ L  +     I  F  +  ++  ++L NALIDM++KCG 
Sbjct: 326 MLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKCGD 385

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           +  A+ +F +    +  ITW++++SG+  +G   EA+L+YN M   G + D +  +  L+
Sbjct: 386 VGRAQSIFYEMK-TRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALA 444

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           AC   GL+ EG  I+N ++  Y I+P  E   CVVD+LGRAG L  A+ FI++MP+EPS 
Sbjct: 445 ACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSV 504

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
            IW  L+S+ V HGN+E  D   K + +LEP N S  V +SN  A   RWD V   RT+M
Sbjct: 505 VIWATLLSSCVAHGNAEFIDYVSKKITELEPFNSSYQVLVSNSSALEGRWDGVIGARTIM 564

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           ++ G++K PG S I +  + H F   D  H     IYE +D L+ +MR    +P
Sbjct: 565 RNWGIEKVPGSSSIQVGSEVHEFLAKDTMHERRKEIYETVDGLMALMRHTEEAP 618


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 170/522 (32%), Positives = 280/522 (53%), Gaps = 36/522 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L   A  ++L   ++ H+  +  G      VST ++  Y  CG    ++ VF+
Sbjct: 327 AVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFD 386

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +Q ++   +N++I GY +N    EAL LF  M    V   D ++       GE+  L+ 
Sbjct: 387 GMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDE 446

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +H L ++IG   +V + N+L++MY KC +      +FDE+       +  R+S    
Sbjct: 447 GRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDEL------GYKTRVS---- 496

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                   W AMI G  QNG  ++A+ LF  MQL++ ++P+  +
Sbjct: 497 ------------------------WNAMILGCTQNGSSEDAVRLFSRMQLEN-VKPDSFT 531

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           LVS++P  + +      + IHG++IR  L+ DV +  ALIDMY+KCG +  AR +F +S+
Sbjct: 532 LVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLF-NSA 590

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            ++  ITW++++ GYG HG G  AV L+ +M   G  P+  T + VLSAC  +GL++EG 
Sbjct: 591 RDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQ 650

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           E ++S+   Y ++P  E    +VD+LGRAG+L  A  FI+ MP+EP  S++GA++ A  +
Sbjct: 651 EYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKL 710

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H N E+ + + + + +LEPE    +V L+N+YA++  W  VA +RT M+ +GL+K+PG S
Sbjct: 711 HKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWS 770

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            + +  + H F      H  +  IY  L  LI  ++     P
Sbjct: 771 IVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVP 812



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 179/365 (49%), Gaps = 39/365 (10%)

Query: 105 ALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163
           AL  F+ M  ++ S P   T  ++ KL     DL  G  +H      G   + + A +L 
Sbjct: 208 ALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALA 267

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
           +MY KC +                             GD      +RRVFD+M  R+  A
Sbjct: 268 NMYAKCRR----------------------------PGD------ARRVFDRMPARDRVA 293

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           W A++ GY +NG  + A+ + + MQ +D   P+ V+LVSVLP C+    L   +++H FA
Sbjct: 294 WNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFA 353

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           +R   +  V++  A++D+Y KCG++D AR+VF D   ++++++W++++ GY  +G   EA
Sbjct: 354 VRGGFDEQVNVSTAILDVYCKCGAVDSARKVF-DGMQDRNSVSWNAMIKGYAENGDATEA 412

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + L+ +MV  G     ++++  L ACG  G ++EG  ++  ++    ++    +   ++ 
Sbjct: 413 LALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRI-GLESNVNVMNALIT 471

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           M  +  + D A      +  +   S W A++     +G+SE   +   S +QLE   P +
Sbjct: 472 MYCKCKRTDLAAQVFDELGYKTRVS-WNAMILGCTQNGSSE-DAVRLFSRMQLENVKPDS 529

Query: 464 YVSLS 468
           +  +S
Sbjct: 530 FTLVS 534



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 4/230 (1%)

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           A +       DL  AL  F  M       P   +  S+L  C++   L+ G+ +H     
Sbjct: 194 ARLRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAA 253

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
           + L+ +     AL +MY+KC     ARRVF D    +D + W+++V+GY  +G    AV 
Sbjct: 254 RGLSPEALAATALANMYAKCRRPGDARRVF-DRMPARDRVAWNALVAGYARNGLAEAAVG 312

Query: 346 LYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
           +  +M    G +PD +T+V VL AC  +  +    E++   +          +   ++D+
Sbjct: 313 MVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRG-GFDEQVNVSTAILDV 371

Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
             + G +D A      M    S S W A++     +G++      +K ++
Sbjct: 372 YCKCGAVDSARKVFDGMQDRNSVS-WNAMIKGYAENGDATEALALFKRMV 420


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 281/512 (54%), Gaps = 24/512 (4%)

Query: 36  LKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVFNSIQ--HKDVYLYNSL 92
           L L ++ H+ +L    ++ N FV++ L+  YA   +   ++LVF+ +    + + L+N++
Sbjct: 285 LSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAM 344

Query: 93  INGYVKNHGHNEALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I GY +     +ALELF+ M   + V P + T+A +       +       +HG  +K G
Sbjct: 345 ICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRG 404

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              +  + N+LM +Y + G       +F  +  R+V SWN  I+G    G      +  R
Sbjct: 405 MADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVR 464

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
              Q  R    A    I G       DE  V+           PN ++L+++LP C+ L 
Sbjct: 465 EMQQQGRFTDAATEDGIAGA------DEEPVV-----------PNNITLMTLLPGCAMLA 507

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
             + GK+IHG+A+R  L+ DV++ +AL+DMY+KCG L  +R VF D    ++ ITW+ ++
Sbjct: 508 APARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVF-DRLPRRNVITWNVLI 566

Query: 332 SGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
             YG+HG G EA+ L+++MV    +KP+ +T +  L+AC  SG+++ GLE++ S+   + 
Sbjct: 567 MAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSMKRNHG 626

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLA 449
           ++PT ++ AC VD+LGRAG+LD A   I +M P E   S W + + A  +H N  + ++A
Sbjct: 627 VEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNVALGEIA 686

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            + L +LEP+  S+YV L N+Y+++  W+  +E+R+ M+ RG+ K PGCSWI + G  H 
Sbjct: 687 AERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWIELDGVIHR 746

Query: 510 FSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           F   + AHP S  ++  +D L   MR    +P
Sbjct: 747 FMAGESAHPESTLVHAHMDALWERMRDQGYTP 778



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 188/422 (44%), Gaps = 42/422 (9%)

Query: 30  SATHRSLKLTKQSHSQIL--SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           +A  RSL   +  H   L   L     P VS  L+TAYA CG  T +  +F+++  +D  
Sbjct: 67  AAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALALFDAMPSRDAV 126

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI-KDLNVGMLIHGL 146
            +NSLI           AL+   +M         FTL ++      + +DL +G   H  
Sbjct: 127 TFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAF 186

Query: 147 SIKIGFV--VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
           ++K GF+   +    N+L+SMY + G   +   LF      +VG+ +V   G        
Sbjct: 187 ALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFG-----SVGATDVPGGG-------- 233

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
                           V  W  M++  VQ+G   EA+ +  +M  +  + P+ V+  S L
Sbjct: 234 ----------------VVTWNTMVSLLVQSGRCGEAIEVLYDMVARG-VRPDGVTFASAL 276

Query: 265 PTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           P CS L  LS G+++H + ++  +L  +  + +AL+DMY+    +  AR VF+     + 
Sbjct: 277 PACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGER 336

Query: 324 AI-TWSSIVSGYGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGVLSACGRSGLINEGLEI 381
            +  W++++ GY   G   +A+ L+ +M    G  P   TI GVL +C RS     G E 
Sbjct: 337 QLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETF-AGKEA 395

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMH 440
            +  +    +     +   ++D+  R G +D A     T  +EP   + W  L++  V+ 
Sbjct: 396 VHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFAT--IEPRDVVSWNTLITGCVVQ 453

Query: 441 GN 442
           G+
Sbjct: 454 GH 455



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 137/335 (40%), Gaps = 45/335 (13%)

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV--VDVILANSLMSMYVKCGKFSECLN 177
           D F L   +K +  ++ L     IHG +++   +      ++N+L++ Y +CG  +  L 
Sbjct: 56  DRFALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALA 115

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           LF                                  D M  R+   + ++I         
Sbjct: 116 LF----------------------------------DAMPSRDAVTFNSLIAALCLFRRW 141

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI-GLSGGKQIHGFAIRKE-LNHDVSLC 295
             AL    +M L+        +LVSVL  CS L   L  G++ H FA++   L+ D    
Sbjct: 142 LPALDALRDMLLEGH-PLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFA 200

Query: 296 -NALIDMYSKCGSLDCARRVFEDSSFNK----DAITWSSIVSGYGLHGKGHEAVLLYNKM 350
            NAL+ MY++ G +D A+ +F             +TW+++VS     G+  EA+ +   M
Sbjct: 201 FNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDM 260

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
           V  G +PD +T    L AC +  +++ G E++  V+    +   + + + +VDM     +
Sbjct: 261 VARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHER 320

Query: 411 LDRALDFIKTMPV-EPSPSIWGALVSASVMHGNSE 444
           +  A      +P  E    +W A++      G  E
Sbjct: 321 VGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDE 355


>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
 gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
 gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 531

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/480 (33%), Positives = 261/480 (54%), Gaps = 9/480 (1%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           + T L++AYA  G P  ++ +F+ +  + +    ++   +V +    +A+ +F +M    
Sbjct: 48  LPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADG 107

Query: 117 VSPDDFTLA-TISKLSGE---IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
           V PD+  LA  +    G        N G  IH L +  G   DV ++  L+ +Y +CGK 
Sbjct: 108 VFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKL 167

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
           +    +FD+MP R+  +WN  +  +A  G    V  +  +F  M RR+V +W  ++ GY 
Sbjct: 168 AVSRRVFDDMPSRSTITWNAMLHQYARHGK---VDTAYELFLAMPRRDVVSWNTVMAGYC 224

Query: 233 QNGDLDEALVLFLEMQLKDR--IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
             G   EAL LF +M       + PN  ++ ++L  C+    L  G  +H +  R  +N 
Sbjct: 225 VAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMND 284

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           D  L   LIDMY KCGS+D A +VFE +   +D  +W++++ G  +HG+  +A+ +++ M
Sbjct: 285 DGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMM 344

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G  PD +T+VGVL+AC   GL++EGL  + S+   +RI P  E   C++D+LGR G+
Sbjct: 345 QDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGR 404

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           L  A   I+TMP++P+  IWGA +SA  +HGN E+  +A + L +L+P++P   V LS++
Sbjct: 405 LQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSM 464

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YA ++ W  +A  R  M    +KK+PGCS I + G+ H F      HP    I  +L D+
Sbjct: 465 YAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDV 524


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 170/508 (33%), Positives = 276/508 (54%), Gaps = 39/508 (7%)

Query: 26  FLQVSATHRSLKLT-KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF--NSIQ 82
           F+  S    SL ++ +Q H  +   G  + PFV T LI+ Y  CG    ++ VF  N   
Sbjct: 58  FILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQS 117

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
            +    YN+LI+GY  N    +A  +F  M  + VS D  T+  +  L    + L +G  
Sbjct: 118 SQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRS 177

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +HG  +K G   +V + NS ++MY+KCG                                
Sbjct: 178 LHGQCVKGGLDSEVAVLNSFITMYMKCGS------------------------------- 206

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              V   RR+FD+M  + +  W A+I+GY QNG   + L L+ +M+    + P+  +LVS
Sbjct: 207 ---VEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMK-SSGVCPDPFTLVS 262

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL +C+ L     G ++           +V + NA I MY++CG+L  AR VF D    K
Sbjct: 263 VLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVF-DIMPVK 321

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
             ++W++++  YG+HG G   ++L++ M+  G +PD    V VLSAC  SGL ++GLE++
Sbjct: 322 SLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELF 381

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
            ++   Y+++P  E  +C+VD+LGRAG+LD A++FI++MPVEP  ++WGAL+ A  +H N
Sbjct: 382 RAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKN 441

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
            +M +LA+  +I+ EP N   YV +SN+Y+ S+  + +  +R MM++R  +K PG S++ 
Sbjct: 442 VDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVE 501

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLDDL 530
             G+ H F   D++H  +  ++ MLD+L
Sbjct: 502 HKGRVHLFLAGDRSHEQTEEVHRMLDEL 529



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 183/396 (46%), Gaps = 38/396 (9%)

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           +E++ L+ +M  S  SPD F+   I K    +     G  +H    K G   +  +  +L
Sbjct: 35  SESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTAL 94

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           +SMY KCG  ++   +F+E PQ               S   S+                 
Sbjct: 95  ISMYCKCGLVADARKVFEENPQ---------------SSQLSV----------------- 122

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            + A+I+GY  N  + +A  +F  M+ +  +  + V+++ ++P C+    L  G+ +HG 
Sbjct: 123 CYNALISGYTANSKVTDAAYMFRRMK-ETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQ 181

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            ++  L+ +V++ N+ I MY KCGS++  RR+F++    K  ITW++++SGY  +G  ++
Sbjct: 182 CVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPV-KGLITWNAVISGYSQNGLAYD 240

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
            + LY +M   G  PD  T+V VLS+C   G    G E+   ++ +    P   +    +
Sbjct: 241 VLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEV-GKLVESNGFVPNVFVSNASI 299

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPEN 460
            M  R G L +A      MPV+   S W A++    MHG  E+  + +  +I+  + P+ 
Sbjct: 300 SMYARCGNLAKARAVFDIMPVKSLVS-WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDG 358

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
               + LS    S      +   R M ++  L+  P
Sbjct: 359 AVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGP 394



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 141/344 (40%), Gaps = 46/344 (13%)

Query: 14  TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73
           T  +  S T+   + +      L L +  H Q +  G  S   V    IT Y  CG    
Sbjct: 150 TGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEA 209

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
            + +F+ +  K +  +N++I+GY +N    + LEL+  M  S V PD FTL ++      
Sbjct: 210 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAH 269

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           +    +G  +  L    GFV +V ++N+ +SMY +CG  ++   +FD MP +++ SW   
Sbjct: 270 LGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSW--- 326

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                                          TAMI  Y  +G  +  L+LF +M +K  I
Sbjct: 327 -------------------------------TAMIGCYGMHGMGEIGLMLFDDM-IKRGI 354

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL------CNALIDMYSKCGS 307
            P+    V VL  CS       G    G  + + +  +  L       + L+D+  + G 
Sbjct: 355 RPDGAVFVMVLSACS-----HSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 409

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           LD A    E      D   W +++    +H     A L + K++
Sbjct: 410 LDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVI 453


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 183/636 (28%), Positives = 307/636 (48%), Gaps = 98/636 (15%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           L +A     +       + T    LQ+ A  +S    K+ HS I S     +  +  KL+
Sbjct: 82  LENAMELICMCQKSELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLV 141

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYN-------------------------------- 90
           + YA CG   + + VF++++ K+VYL+N                                
Sbjct: 142 SFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRP 201

Query: 91  -------------------SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
                              S+I+GYV N      L ++  M Y  +  D  T+ ++    
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
                L++G  +H L+IK  F   +  +N+L+ MY KCG     L +F++M +RNV SW 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 192 VRISGHASSGDFSLVVR--------------------------------SRRVFDQMK-- 217
             I+G+   G     ++                                 + V D +K  
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 381

Query: 218 --RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD---------RIEPNKVSLVSVLPT 266
               N++   A+++ Y + G ++ A  +F  M +KD          ++P+  ++  VLP 
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPA 441

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+SL  L  GK+IHG+ +R   + D  + NAL+D+Y KCG L  AR +F D   +KD ++
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPSKDLVS 500

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+ +++GYG+HG G+EA+  +N+M   G +PD ++ + +L AC  SGL+ +G   +  + 
Sbjct: 501 WTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMK 560

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
           N + I+P  E  AC+VD+L R G L +A +F++T+P+ P  +IWGAL+     + + E+ 
Sbjct: 561 NDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELA 620

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
           +   + + +LEPEN   YV L+N+YA + +W+ V  LR  +  +GL+K+PGCSWI I GK
Sbjct: 621 EKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGK 680

Query: 507 THCF-SVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            + F S  + +HP S +I  +L  +   M+     P
Sbjct: 681 VNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFP 716



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 195/401 (48%), Gaps = 25/401 (6%)

Query: 52  ISNPFVSTKLITA-YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
           I  P + TK+ +  ++ C     S     +I H+ V  YN+ I  + +      A+EL  
Sbjct: 32  IHKPSLKTKIFSPIFSSCIPIRISATPTRTIDHQ-VTDYNAKILHFCQLGDLENAMELIC 90

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
               S +     T  ++ +L   +K    G  +H +       VD  L   L+S Y  CG
Sbjct: 91  MCQKSELETK--TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCG 148

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV-----------VRSRR------VF 213
              E   +FD M ++NV  WN  +S +A  GDF              +  +R      +F
Sbjct: 149 DLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELF 208

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D++  R+V +W +MI+GYV NG  +  L ++ +M     I+ +  +++SVL  C++   L
Sbjct: 209 DKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVGCANSGTL 267

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           S GK +H  AI+      ++  N L+DMYSKCG LD A RVFE     ++ ++W+S+++G
Sbjct: 268 SLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y   G+   A+ L  +M   G K D++ I  +L AC RSG ++ G ++++  I    ++ 
Sbjct: 327 YTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD-YIKANNMES 385

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
              +C  ++DM  + G ++ A     TM V+   S W  ++
Sbjct: 386 NLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIIS-WNTMI 425


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 181/564 (32%), Positives = 297/564 (52%), Gaps = 34/564 (6%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILS--LGHISNPFVSTKLITAYALC 68
            L    +Y      H L   AT  S++   +  +QI++  +  I    ++ K I   +  
Sbjct: 12  TLAVLHDYNHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSH 71

Query: 69  GQPTQSQLVFNS-IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY--SNVSPDDFTLA 125
           G    S L+FN  +   +++ YN+L+  + +++  +  +  F+N     +  +PD++T  
Sbjct: 72  GNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFT 131

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
           ++ K    +  +  G  +H    K G   ++ + NSL+ +Y K G       LFDEM  R
Sbjct: 132 SVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVR 191

Query: 186 NVGSWNVRISGHASSG--DFSLVV--------------------------RSRRVFDQMK 217
           +V SWN  ISG+  SG  D + +V                           +R++F+ M 
Sbjct: 192 DVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMP 251

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
            RNV +W AMI GY QN    +A+ LF +MQ +  + PN V+LVSVL  C+ L  L  GK
Sbjct: 252 MRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGK 311

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            IH F  R ++   + L NAL DMY+KCG +  A+ VF +    +D I+WS I+ G  ++
Sbjct: 312 WIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMH-ERDVISWSIIIMGLAMY 370

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G  +EA   + +M+  G +P+ I+ +G+L+AC  +GL+++GLE ++ +   Y I P  E 
Sbjct: 371 GYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEH 430

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             CVVD+L RAG+LD+A   I +MP++P+  +WGAL+    ++ ++E  +     +++L+
Sbjct: 431 YGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELD 490

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
             +  + V L+N+YAS  R D  A  R  M+D    K+PGCSWI I+   + F + D +H
Sbjct: 491 SNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSH 550

Query: 518 PCSVSIYEMLDDLILIMRGAAASP 541
           P S+ IY M+ +L   M+ A   P
Sbjct: 551 PQSLRIYSMIRELKWKMKVAGYKP 574


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 190/564 (33%), Positives = 294/564 (52%), Gaps = 26/564 (4%)

Query: 1   MILSSARNTFAL---VTSRNYTSATVQHFLQVSATHRSLKLT---KQSHSQILSLGHISN 54
           M  S A    AL   +T+R+  S  V   + +     SL  +   +Q H   +  G + +
Sbjct: 339 MWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDD 398

Query: 55  PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY 114
            FV   ++  YA CG+  ++  VF  ++ KDV  +N+++ GY +      AL LF  M  
Sbjct: 399 VFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTE 458

Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG---- 170
            N+  D  T   +     +       + +       G   +V+   SL+S  V  G    
Sbjct: 459 ENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLH 518

Query: 171 -KFSEC------LNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM--KRRN 220
            K + C      LNL    P   ++   N  I  +A      +   +R++FD +  K R+
Sbjct: 519 GKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEV---ARKMFDSVSPKDRD 575

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           V  WT MI GY Q+GD + AL LF  M   D+ I+PN  +L   L  C+ L  L  G+Q+
Sbjct: 576 VVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQV 635

Query: 280 HGFAIRKELNHD-VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           H + +R       + + N LIDMYSK G +D A+ VF D+   ++A++W+S+++GYG+HG
Sbjct: 636 HAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVF-DNMPQRNAVSWTSLMTGYGMHG 694

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           +G +A+ ++++M  +   PD IT + VL AC  SG+++ G+  +N +   + + P  E  
Sbjct: 695 RGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHY 754

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
           AC+VD+ GRAG+L  A+  I  MP+EP+P +W AL+SA  +H N E+ + A   L++LE 
Sbjct: 755 ACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELES 814

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
            N  +Y  LSN+YA++RRW  VA +R  MK  G+KK PGCSWI        F V D++HP
Sbjct: 815 GNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHP 874

Query: 519 CSVSIYEMLDDLILIMRGAAASPH 542
            S  IYE L DLI  ++     P 
Sbjct: 875 QSQQIYETLADLIQRIKAIGYVPQ 898



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 248/521 (47%), Gaps = 33/521 (6%)

Query: 3   LSSARNTFALVTSRNYTSATVQHF-----LQVSATHRSLKLTKQSHSQILSLGHISNPFV 57
           L S R+ F L         T  H+      +  A   SL L    H+ +   G  SN FV
Sbjct: 237 LGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFV 296

Query: 58  STKLITAYALCGQPTQSQLVFNSIQHK---DVYLYNSLINGYVKNHGHNEALELFSNMYY 114
              +++ Y  CG    +  +F+ + H+   D+  +NS+++ Y+     N AL LF  M  
Sbjct: 297 CNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTT 356

Query: 115 SNV-SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
            ++ SPD  +L  I      +     G  +HG SI+ G V DV + N+++ MY KCGK  
Sbjct: 357 RHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKME 416

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN----VYAWTAMIN 229
           E   +F  M  ++V SWN  ++G++ +G       +  +F++M   N    V  WTA+I 
Sbjct: 417 EANKVFQRMKFKDVVSWNAMVTGYSQAGRLE---HALSLFERMTEENIELDVVTWTAVIT 473

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           GY Q G   EAL +F +M       PN V+LVS+L  C S+  L  GK+ H +AI+  LN
Sbjct: 474 GYAQRGQGCEALDVFRQM-CDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILN 532

Query: 290 --------HDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKG 340
                    D+ + N LIDMY+KC S + AR++F+  S  ++D +TW+ ++ GY  HG  
Sbjct: 533 LDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDA 592

Query: 341 HEAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
           + A+ L++ M  +    KP+  T+   L AC R   +  G +++  V+  +       + 
Sbjct: 593 NNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVA 652

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C++DM  ++G +D A      MP   + S W +L++   MHG  E     +  + ++ P
Sbjct: 653 NCLIDMYSKSGDVDTAQIVFDNMPQRNAVS-WTSLMTGYGMHGRGEDALRVFDEMRKV-P 710

Query: 459 ENPSNYVSLSNLYASSRRW---DAVAELRTMMKDRGLKKSP 496
             P     L  LYA S        +     M KD G+   P
Sbjct: 711 LVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGP 751



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 210/478 (43%), Gaps = 77/478 (16%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI--QHKDVYLYNSL 92
           SL   K  H Q +  G + +  ++T LI  Y        + L+   +      V+ +N L
Sbjct: 173 SLAHAKLLHQQSIMQGLLFH--LATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQL 230

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           I   +      +   L+  M     +PD +T   + K    +  L++G  +H    + GF
Sbjct: 231 IRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGF 290

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             +V + N+++SMY KCG      N+FD++  R +                         
Sbjct: 291 ASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGI------------------------- 325

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
                 +++ +W ++++ Y+   D + AL LF +M  +  + P+ +SLV++LP C+SL  
Sbjct: 326 ------QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAA 379

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK---------- 322
              G+Q+HGF+IR  L  DV + NA++DMY+KCG ++ A +VF+   F            
Sbjct: 380 SLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTG 439

Query: 323 ------------------------DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
                                   D +TW+++++GY   G+G EA+ ++ +M   GS+P+
Sbjct: 440 YSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPN 499

Query: 359 IITIVGVLSACGRSGLINEGLEIY----NSVINTYRIKPTTE---ICACVVDMLGRAGQL 411
           ++T+V +LSAC   G +  G E +      ++N     P  +   +   ++DM  +    
Sbjct: 500 VVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQST 559

Query: 412 DRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468
           + A     ++ P +     W  ++     HG++      +  + +++     N  +LS
Sbjct: 560 EVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLS 617


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 167/514 (32%), Positives = 268/514 (52%), Gaps = 36/514 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+ S     + + +Q H  IL  G  SN FV + L+ +YA  G   ++Q  F+ +
Sbjct: 180 TLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEV 239

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D+ L+N +++ Y  N    +A  +F  M    V  D FT  ++    G +    +G 
Sbjct: 240 SSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGK 299

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HGL I++ F +DV++A++L+ MY K                 N+              
Sbjct: 300 QVHGLIIRLSFDLDVLVASALVDMYSK---------------NENIED------------ 332

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  +R+ FD M  +N+ +WT M  GY Q+GD  E + L  EM ++    P++++L 
Sbjct: 333 -------ARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEM-IRVYTYPDELALA 384

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L +C +L   S   Q+H + +       +S+ NAL+  YSKCGS+  A + F  S   
Sbjct: 385 SILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFS-SVAE 443

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
            D I+W+S++  Y  HG   + V ++ K++    +PD +  +GVLSAC   G + EGL  
Sbjct: 444 PDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLHY 503

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +N +IN Y+I P +E    ++D+LGRAG LD A++ + +MPVEP     GA + A  ++ 
Sbjct: 504 FNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGAFLGACKVYR 563

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N  +   A + L  +EP  P  Y  +SN+YAS   W  VA +R +M++R   K PGCSW+
Sbjct: 564 NVGLARWASEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCSWM 623

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
              G+ H F   DK HP +V +Y MLD L+ +M+
Sbjct: 624 ETAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMK 657



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 169/386 (43%), Gaps = 73/386 (18%)

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           K+S ++  L+ G  +H   IK+G    + L N ++ +YVKC +F++   +FDEMP +NV 
Sbjct: 81  KISAKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVV 140

Query: 189 SWNVRISGHASSG-DFSLVVRSRRVFDQMKRR---------------------------- 219
           SWN  I G       F+LV      F QM                               
Sbjct: 141 SWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQL 200

Query: 220 -----------NVYAWTAMINGYVQNGDLDEALVLFLEMQLKD----------------- 251
                      N +  +A+++ Y + G +DEA   F E+  +D                 
Sbjct: 201 HCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQ 260

Query: 252 ----------RIEPNK---VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
                     R+E  K    +  S++ +C  L     GKQ+HG  IR   + DV + +AL
Sbjct: 261 GKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASAL 320

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           +DMYSK  +++ AR+ F D    K+ ++W+++  GYG HG G E + L  +M+ + + PD
Sbjct: 321 VDMYSKNENIEDARKAF-DGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPD 379

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            + +  +LS+CG     +E ++++  V+     +    I   +V    + G +  A    
Sbjct: 380 ELALASILSSCGNLSATSEVVQVHAYVVEN-GFEAFLSIANALVSAYSKCGSIGSAFQSF 438

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSE 444
            ++  EP    W +L+ A   HG S+
Sbjct: 439 SSV-AEPDIISWTSLMGAYAFHGLSK 463


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 170/475 (35%), Positives = 264/475 (55%), Gaps = 40/475 (8%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T LIT Y   G    ++ +F+ I  KDV  +N++I+GYV++    EA+  F  M  +NV 
Sbjct: 201 TALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVL 260

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           P+  T+  +    G  +   +G  I       GF  ++ L N+L+ MY KCG+       
Sbjct: 261 PNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETD----- 315

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
                                         +R +FD ++ ++V +W  MI GY      +
Sbjct: 316 -----------------------------IARELFDGIEEKDVISWNTMIGGYSYLSLYE 346

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH--DVSLCN 296
           EAL LF E+ L+  ++PN V+ + +L  C+ L  L  GK +H + I K L +  + SL  
Sbjct: 347 EALALF-EVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAY-IDKNLRNSSNASLWT 404

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-S 355
           +LIDMY+KCG ++ A RVF  S  +++  +W++++SG+ +HG    A+ L+++MV  G  
Sbjct: 405 SLIDMYAKCGCIEAAERVFR-SMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLF 463

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
           +PD IT VGVLSAC ++GL++ G + + S+I  Y I P  +   C++D+L RA + + A 
Sbjct: 464 RPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAE 523

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
             +K M +EP  +IWG+L+SA   HG  E  +   + L QLEPEN   +V LSN+YA + 
Sbjct: 524 ILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAG 583

Query: 476 RWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           RWD VA +RT + D+G+KK PGC+ I I G  H F V DK HP   +IY+ML+++
Sbjct: 584 RWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEV 638



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 141/480 (29%), Positives = 240/480 (50%), Gaps = 19/480 (3%)

Query: 24  QH-FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI--TAYALCGQPTQSQLVF-- 78
           QH +L +    +++   KQ HS I+  G  +  FV +KLI   A +  G  + +  +F  
Sbjct: 28  QHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEE 87

Query: 79  NSIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           N   HK +V+++NSLI GY  +     +L LFS M Y  V P+  T   + K   + K  
Sbjct: 88  NQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKAT 147

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
           + G  +H  ++K+    +  +  S++ MY   G+      +FD+   R+  S+   I+G+
Sbjct: 148 HEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGY 207

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
            S G    +  +RR+FD++  ++V +W AMI+GYVQ+G  +EA+V F EMQ +  + PNK
Sbjct: 208 VSQG---CLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQ-EANVLPNK 263

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            ++V VL  C        GK I  +        ++ L NALIDMY KCG  D AR +F D
Sbjct: 264 STMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELF-D 322

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               KD I+W++++ GY       EA+ L+  M+    KP+ +T +G+L AC   G ++ 
Sbjct: 323 GIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDL 382

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G  ++  +    R      +   ++DM  + G ++ A    ++M      S W A++S  
Sbjct: 383 GKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS-WNAMLSGF 441

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL-----RTMMKDRGL 492
            MHG++E     +  ++      P +   +  L A ++    + +L     R+M++D G+
Sbjct: 442 AMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQA--GLVDLGHQYFRSMIQDYGI 499


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 159/507 (31%), Positives = 272/507 (53%), Gaps = 45/507 (8%)

Query: 36  LKLTKQSHSQILSLGHISNPFVS-TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           L+  ++S  Q L  G + +     T+ +   ++  + +  + +F  +  KD+  +N++I 
Sbjct: 154 LRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRK-IFEMMPEKDLVSWNTIIA 212

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G  +N  + E L +   M  +N+ PD FTL+++  L  E  D++ G  IHG SI+ G   
Sbjct: 213 GNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDA 272

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D+ +A+SL+ MY KC +                                  V  S RVF 
Sbjct: 273 DIYVASSLIDMYAKCTR----------------------------------VADSCRVFT 298

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            +  R+  +W ++I G VQNG  DE L  F +M L  +I+P   S  S++P C+ L  L 
Sbjct: 299 LLTERDGISWNSIIAGCVQNGLFDEGLRFFRQM-LMAKIKPKSYSFSSIMPACAHLTTLH 357

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GKQ+HG+  R   + ++ + ++L+DMY+KCG++  A+++F+     +D ++W++++ G 
Sbjct: 358 LGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL-RDMVSWTAMIMGC 416

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            LHG+  +A+ L+ +M   G K        VL+AC   GL++E  + +NS+   + I P 
Sbjct: 417 ALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPG 469

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E  A V D+LGRAG+L+ A DFI  M + P+ SIW  L+SA  +H N +M +     ++
Sbjct: 470 VEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRIL 529

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +++P N   Y+ L+N+Y+++RRW   A+ R  M+  G++K+P CSWI +  K + F   D
Sbjct: 530 EVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGD 589

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASP 541
           ++HPC   I E ++ L+ +M      P
Sbjct: 590 ESHPCYEKIREAMEVLVELMEKEGYVP 616



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 207/435 (47%), Gaps = 21/435 (4%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ 75
           R  T A V+  L+   + +S    +Q H+Q+L     S+    + L++ Y+       S 
Sbjct: 2   RTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKF-QASSLCNLSLLLSIYSHINLLHDSL 60

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
            +FN+I       + S+I  Y  +   +++L  F  M  S + PD     ++ K    + 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE-------CLNLFDEMPQRNVG 188
           DLN+G  +HG  I++G   D+   N+LM+MY K     E          +FDEM +R   
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
              V +    S          R++F+ M  +++ +W  +I G  +NG  +E L +  EM 
Sbjct: 181 VRTVSVLSEDS---------VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMG 231

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
             + ++P+  +L SVLP  +  + +S GK+IHG +IR+ L+ D+ + ++LIDMY+KC  +
Sbjct: 232 GAN-LKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRV 290

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
             + RVF   +  +D I+W+SI++G   +G   E +  + +M+    KP   +   ++ A
Sbjct: 291 ADSCRVFTLLT-ERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPA 349

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
           C     ++ G +++  +           I + +VDM  + G +  A      M +    S
Sbjct: 350 CAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS 408

Query: 429 IWGALVSASVMHGNS 443
            W A++    +HG +
Sbjct: 409 -WTAMIMGCALHGQA 422



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 117/256 (45%), Gaps = 10/256 (3%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L + A +  +   K+ H   +  G  ++ +V++ LI  YA C +   S  VF 
Sbjct: 239 SFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFT 298

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  +D   +NS+I G V+N   +E L  F  M  + + P  ++ ++I      +  L++
Sbjct: 299 LLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHL 358

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +HG   + GF  ++ +A+SL+ MY KCG       +FD M  R++ SW   I G A 
Sbjct: 359 GKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCAL 418

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
            G     +    +F+QM+   +    A++      G +DEA   F  M     I P    
Sbjct: 419 HGQAPDAI---ELFEQMETEGI---KAVLTACSHGGLVDEAWKYFNSMTRDFGIAPG--- 469

Query: 260 LVSVLPTCSSLIGLSG 275
            V      S L+G +G
Sbjct: 470 -VEHYAAVSDLLGRAG 484


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 171/523 (32%), Positives = 270/523 (51%), Gaps = 37/523 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L+ +A    + + +  H   +  G   +  V T L++ Y+ CG    +Q +F+
Sbjct: 212 STTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFD 271

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            + + D+  YN+LI+GY  N     ++ELF  +  S   P+  TL  +  +        +
Sbjct: 272 RMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELL 331

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              +H   +K     D +++ +L ++Y +                               
Sbjct: 332 ARCLHAFVVKARLDADALVSTALTTLYCRLNDMES------------------------- 366

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    +R +FD M  + + +W AMI+GY QNG  + A+ LF  MQ +  ++PN ++
Sbjct: 367 ---------ARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQ-ELNVQPNPIT 416

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           + S L  C+ L  LS GK +H    +++L  +V +  ALIDMY+KCGS+  AR +F D  
Sbjct: 417 ISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIF-DRM 475

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            NK+ ++W++++SGYGLHG+G EA+ LY  M+     P   T + V+ AC   GL++EG 
Sbjct: 476 DNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQ 535

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP-SPSIWGALVSASV 438
           +++  + N YRI P  E C C+VD+LGRAG+L+ AL+ I   P     P +WGAL+ A +
Sbjct: 536 KVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACM 595

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           +H NS++  LA + L +L+ EN   YV LSNLY S + +   A +R   K R L K+PGC
Sbjct: 596 VHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGC 655

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           + I I  + H F   D  HP S +IY  L+ L   M  A   P
Sbjct: 656 TLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQP 698



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 196/433 (45%), Gaps = 44/433 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H   ++ G+ ++ FV++ L   Y    +   ++ VF+++   D  L+N+L+ G   +   
Sbjct: 137 HGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGS--- 193

Query: 103 NEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
            EALE F  M  +  V PD  TLA+  + + E   + +G  +HG  +K G      +   
Sbjct: 194 -EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTG 252

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           LMS+Y KCG       LFD M   ++ ++N                              
Sbjct: 253 LMSLYSKCGDMDSAQFLFDRMDNPDLVAYN------------------------------ 282

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
               A+I+GY  NG ++ ++ LF E+       PN  +LV+V+P  S        + +H 
Sbjct: 283 ----ALISGYSVNGMVESSVELFKELTASG-WRPNSSTLVAVIPVYSPFGHELLARCLHA 337

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           F ++  L+ D  +  AL  +Y +   ++ AR +F D+   K   +W++++SGY  +G   
Sbjct: 338 FVVKARLDADALVSTALTTLYCRLNDMESARSIF-DAMLEKTMESWNAMISGYAQNGLTE 396

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
            AV L+  M  L  +P+ ITI   LSAC   G ++ G  ++  +I+  +++    +   +
Sbjct: 397 MAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHR-IISKEKLELNVYVMTAL 455

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           +DM  + G +  A      M  +   S W A++S   +HG        YK ++      P
Sbjct: 456 IDMYAKCGSIAEARSIFDRMDNKNVVS-WNAMISGYGLHGQGAEALKLYKDMLDARIL-P 513

Query: 462 SNYVSLSNLYASS 474
           ++   LS +YA S
Sbjct: 514 TSSTFLSVIYACS 526



 Score = 45.8 bits (107), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 16/185 (8%)

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           +  + +HG ++      D  + +AL  +Y K    D AR+VF D+  + D I W+++++G
Sbjct: 131 AAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVF-DTVPSPDTILWNTLLAG 189

Query: 334 YGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
                 G EA+  + +MV  G  +PD  T+   L A   +  +  G       ++ Y +K
Sbjct: 190 L----PGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMG-----RCVHGYGVK 240

Query: 393 ----PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
                   +   ++ +  + G +D A      M   P    + AL+S   ++G  E    
Sbjct: 241 CGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMD-NPDLVAYNALISGYSVNGMVESSVE 299

Query: 449 AYKSL 453
            +K L
Sbjct: 300 LFKEL 304


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 176/544 (32%), Positives = 281/544 (51%), Gaps = 45/544 (8%)

Query: 7   RNTFALVTSRNYTSATVQHFLQVSATHRS-LKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           +    +++  +  S      L +   HRS L    + H  IL  G   +PF++TKLI  Y
Sbjct: 63  KQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMY 122

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSLINGY-VKNHGHNEALELFSNMYYSNVSPDDFTL 124
           +  G    ++ VF+  + + +Y++N+L     +  HG  E L L+  M    V  D FT 
Sbjct: 123 SDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHG-EEVLGLYWKMNRIGVESDRFTY 181

Query: 125 ATISK--LSGE--IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
             + K  ++ E  +  L  G  IH    + G+   V +  +L+ MY +            
Sbjct: 182 TYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYAR------------ 229

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                                 F  V  +  VF  M  RNV +W+AMI  Y +NG   EA
Sbjct: 230 ----------------------FGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEA 267

Query: 241 LVLFLEM--QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           L  F EM  + KD   PN V++VSVL  C+SL  L  GK IHG+ +R+ L+  + + +AL
Sbjct: 268 LRTFREMMRETKDS-SPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISAL 326

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           + MY +CG L+  +RVF D   ++D ++W+S++S YG+HG G +A+ ++ +M+  G+ P 
Sbjct: 327 VTMYGRCGKLEVGQRVF-DRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPT 385

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            +T V VL AC   GL+ EG  ++ ++   + IKP  E  AC+VD+LGRA +LD A   +
Sbjct: 386 PVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMV 445

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
           + M  EP P +WG+L+ +  +HGN E+ + A + L  LEP+N  NYV L+++YA ++ WD
Sbjct: 446 QDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWD 505

Query: 479 AVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
            V  ++ +++ RGL+K PG  W+ +  K + F   D+ +P    I+  L  L   M+   
Sbjct: 506 EVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKG 565

Query: 539 ASPH 542
             P 
Sbjct: 566 YIPQ 569


>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 474

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 251/471 (53%), Gaps = 44/471 (9%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L     L G    +  VF  +  K+V L+ S+INGY+ N       +L S   Y ++SP+
Sbjct: 34  LFGMLCLMGVIASANKVFCEMVEKNVVLWTSMINGYLLNK------DLVSARRYFDLSPE 87

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
                                             D++L N+++S Y++ G   E  +LFD
Sbjct: 88  R---------------------------------DIVLWNTMISGYIEMGNMLEARSLFD 114

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           +MP R+V SWN  + G+A+ GD        RVFD M  RNV++W  +I GY QNG + E 
Sbjct: 115 QMPCRDVMSWNTVLEGYANIGDME---ACERVFDDMPERNVFSWNGLIKGYAQNGRVSEV 171

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH-DVSLCNALI 299
           L  F  M  +  + PN  ++  VL  C+ L     GK +H +      N  DV++ NALI
Sbjct: 172 LGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALI 231

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           DMY KCG+++ A  VF+     +D I+W+++++G   HG G EA+ L+++M   G  PD 
Sbjct: 232 DMYGKCGAIEIAMEVFKGIK-RRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDK 290

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           +T VGVL AC   GL+ +GL  +NS+   + I P  E C CVVD+L RAG L +A++FI 
Sbjct: 291 VTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFIN 350

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            MPV+    IW  L+ AS ++   ++ ++A + LI+LEP NP+N+V LSN+Y  + R+D 
Sbjct: 351 KMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDD 410

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            A L+  M+D G KK  G SWI        F  + + HP +  +  +L +L
Sbjct: 411 AARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHPRTEELQRILREL 461



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 3/109 (2%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVFN 79
           AT+   L   A   +    K  H    +LG+   +  V   LI  Y  CG    +  VF 
Sbjct: 189 ATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFK 248

Query: 80  SIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATI 127
            I+ +D+  +N++ING +  HGH  EAL LF  M  S +SPD  T   +
Sbjct: 249 GIKRRDLISWNTMING-LAAHGHGTEALNLFHEMKNSGISPDKVTFVGV 296


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 174/492 (35%), Positives = 258/492 (52%), Gaps = 36/492 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L V+A+   LKL +  H QIL  G   +  V T LI  Y   G+   +  +F     KDV
Sbjct: 267 LSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDV 326

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
            L+ ++I+G V+N   ++AL +F  M    V P   T+A++     ++   N+G  I G 
Sbjct: 327 VLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGY 386

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            ++    +DV   NSL++MY KCG   +                                
Sbjct: 387 ILRQELPLDVATQNSLVTMYAKCGHLDQ-------------------------------- 414

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             S  VFD M RR++ +W AM+ GY QNG + EAL LF EM+  D   P+ +++VS+L  
Sbjct: 415 --SSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMR-SDNQTPDSITIVSLLQG 471

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+S   L  GK IH F IR  L   + +  +L+DMY KCG LD A+R F     + D ++
Sbjct: 472 CASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMP-SHDLVS 530

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           WS+I+ GYG HGKG  A+  Y+K +  G KP+ +  + VLS+C  +GL+ +GL IY S+ 
Sbjct: 531 WSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMT 590

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             + I P  E  ACVVD+L RAG+++ A +  K    +P   + G ++ A   +GN+E+ 
Sbjct: 591 KDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKKKFPDPVLDVLGIILDACRANGNNELG 650

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
           D     ++ L P +  N+V L++ YAS  +W+ V E  T M+  GLKK PG S+I IHG 
Sbjct: 651 DTIANDILMLRPMDAGNFVQLAHCYASINKWEEVGEAWTYMRSLGLKKIPGWSFIDIHGT 710

Query: 507 THCFSVADKAHP 518
              F     +HP
Sbjct: 711 ITTFFTDHNSHP 722



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 143/520 (27%), Positives = 240/520 (46%), Gaps = 78/520 (15%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H +IL  G   + ++++ LI  YA  G    ++ VF+ +  ++V  + ++I  Y +    
Sbjct: 84  HQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRV 143

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EA  LF  M    + P   T+  +S L G + +L     +HG +I  GF+ D+ L+NS+
Sbjct: 144 PEAFSLFDEMRRQGIQPSSVTV--LSLLFG-VSELAHVQCLHGCAILYGFMSDINLSNSM 200

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS---LVVRSRRV--FD--- 214
           +++Y KCG       LFD M  R++ SWN  IS +A  G+     L++++ R+  F+   
Sbjct: 201 LNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGP 260

Query: 215 ------------------------QMKRRNVY----AWTAMINGYVQNGDLD-------- 238
                                   Q+ R   Y      T++I  Y++ G +D        
Sbjct: 261 QTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFER 320

Query: 239 -----------------------EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                                  +AL +F +M LK  ++P+  ++ SV+  C+ L   + 
Sbjct: 321 SSDKDVVLWTAMISGLVQNGSADKALAVFRQM-LKFGVKPSTATMASVITACAQLGSYNL 379

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G  I G+ +R+EL  DV+  N+L+ MY+KCG LD +  VF D    +D ++W+++V+GY 
Sbjct: 380 GTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVF-DMMNRRDLVSWNAMVTGYA 438

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            +G   EA+ L+N+M      PD ITIV +L  C  +G ++ G  I++ VI    ++P  
Sbjct: 439 QNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRN-GLRPCI 497

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            +   +VDM  + G LD A      MP     S W A++     HG  E     Y   ++
Sbjct: 498 LVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVS-WSAIIVGYGYHGKGEAALRFYSKFLE 556

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAEL---RTMMKDRGL 492
                P++ + LS L + S        L    +M KD G+
Sbjct: 557 -SGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGI 595



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 177/368 (48%), Gaps = 43/368 (11%)

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N+ IN +     H++ L  +++M  ++V  D +T  ++ K    +   ++G+ +H   + 
Sbjct: 30  NATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILV 89

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            G  +D  +A+SL++ Y K G F++                                  +
Sbjct: 90  SGLSLDAYIASSLINFYAKFG-FADV---------------------------------A 115

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           R+VFD M  RNV  WT +I  Y + G + EA  LF EM+ +  I+P+ V+++S+L   S 
Sbjct: 116 RKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMR-RQGIQPSSVTVLSLLFGVSE 174

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  +   + +HG AI      D++L N+++++Y KCG+++ +R++F D   ++D ++W+S
Sbjct: 175 LAHV---QCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLF-DYMDHRDLVSWNS 230

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT- 388
           ++S Y   G   E +LL   M   G +    T   VLS     G +  G  ++  ++   
Sbjct: 231 LISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAG 290

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           + +    E    VV + G  G++D A    +    +    +W A++S  V +G+++    
Sbjct: 291 FYLDAHVETSLIVVYLKG--GKIDIAFRMFER-SSDKDVVLWTAMISGLVQNGSADKALA 347

Query: 449 AYKSLIQL 456
            ++ +++ 
Sbjct: 348 VFRQMLKF 355



 Score = 45.1 bits (105), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 15/170 (8%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   LQ  A+   L L K  HS ++  G      V T L+  Y  CG    +Q  FN
Sbjct: 462 SITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFN 521

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYSNVSPDDFT-LATISKLSGEIKDL 137
            +   D+  ++++I GY   HG  E AL  +S    S + P+    L+ +S  S      
Sbjct: 522 QMPSHDLVSWSAIIVGY-GYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHN---- 576

Query: 138 NVGMLIHGLSIKIGFVVDVILANSL------MSMYVKCGKFSECLNLFDE 181
             G++  GL+I      D  +A  L      + +  + G+  E  N++ +
Sbjct: 577 --GLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKK 624


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 174/559 (31%), Positives = 295/559 (52%), Gaps = 46/559 (8%)

Query: 16  RNY----TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           RNY       T    L+ S+   +  + K  H  ++  G  ++  V  +LI  YA   + 
Sbjct: 131 RNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERM 190

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-------- 123
             ++ VF+ ++ K V  +N++++GY  N+  N A  +F  M    V P+  T        
Sbjct: 191 DDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSH 250

Query: 124 ---------------------------LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
                                      LA +  +  ++  LN G +IHG  +K GF   +
Sbjct: 251 ARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYL 310

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
              N+L+++Y K G   +   LF EM  +N+ SWN  IS  A SG +   +      ++M
Sbjct: 311 FAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKM 370

Query: 217 K-----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +     + NV  W+A+I G+   G  +E+L +F +MQL + ++ N V++ SVL  C+ L 
Sbjct: 371 EAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLAN-VKANSVTIASVLSICAMLA 429

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L+ G+++HG  IR  ++ +V + N LI+MY+KCGS      VFE    N+D+I+W+S++
Sbjct: 430 ALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLE-NRDSISWNSMI 488

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           +GYG HG G +A+  +N M+  G +PD +T +  LSAC  +GL+ EG  +++ +   ++I
Sbjct: 489 AGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKI 548

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           +P  E  AC+VD+LGRAG ++ A + IK MP+EP+  IW +L+++  MH ++++ + A  
Sbjct: 549 EPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAA 608

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            +  L  +   +++ LSN++A+S RW+  A +R   + +GLKK PG SWI +  K + F 
Sbjct: 609 KISNLNSKITGSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWSWIEVKKKVYMFK 668

Query: 512 VADKAHPCSVSIYEMLDDL 530
                      + E+L DL
Sbjct: 669 AGYTISEGLEKVDEILHDL 687



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 213/452 (47%), Gaps = 53/452 (11%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ---HKDVYLYNSL 92
           ++ +KQ HS  +  G   + FVS +L++ Y+  G  + ++ VF S     + +  L+NS+
Sbjct: 51  IQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSI 110

Query: 93  INGYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I   V  HG+  EAL+L+  M    V  D FT   + + S  +   N+   +H   ++ G
Sbjct: 111 IRANVY-HGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFG 169

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F   + + N L+ MY K  +  +   +FD+M  ++V SWN  +SG+A + D   V  + R
Sbjct: 170 FQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNYD---VNGASR 226

Query: 212 VFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
           +F QM+      N   WT++++ + + G L+E +VLF +M++K  + P    L  VL  C
Sbjct: 227 MFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKMRMKG-VGPTAEMLAVVLSVC 285

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---------- 317
           + L  L+ G+ IHG+ ++   N  +   NALI +Y K G +  A ++F +          
Sbjct: 286 ADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWN 345

Query: 318 ---SSFNK-------------------------DAITWSSIVSGYGLHGKGHEAVLLYNK 349
              SSF +                         + ITWS+I+ G+   G G E++ ++ K
Sbjct: 346 ALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRK 405

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M     K + +TI  VLS C     +N G E++  VI   R+     +   +++M  + G
Sbjct: 406 MQLANVKANSVTIASVLSICAMLAALNLGREMHGHVIRA-RMDDNVLVGNGLINMYTKCG 464

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
                    + +    S S W ++++    HG
Sbjct: 465 SFKPGFMVFEKLENRDSIS-WNSMIAGYGTHG 495


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 168/489 (34%), Positives = 268/489 (54%), Gaps = 36/489 (7%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           HS  +  G  S  FVS KLI  YA  G+    Q VF+ +  +D+  +NS+I  Y  N   
Sbjct: 270 HSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQP 329

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG-FVVDVILANS 161
             A+ LF  M  S + PD  TL +++ +  ++ D+     + G +++ G F+ D+ + N+
Sbjct: 330 LRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNA 389

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           ++ MY K G                                  LV  +R VF+ +   +V
Sbjct: 390 VVVMYAKLG----------------------------------LVDSARAVFNWLPNTDV 415

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
            +W  +I+GY QNG   EA+ ++  M+ +  I  N+ + VSVLP CS    L  G ++HG
Sbjct: 416 ISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHG 475

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
             ++  L  DV +  +L DMY KCG L+ A  +F       +++ W+++++ +G HG G 
Sbjct: 476 RLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGE 534

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           +AV+L+ +M+  G KPD IT V +LSAC  SGL++EG   +  +   Y I P+ +   C+
Sbjct: 535 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCM 594

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           VDM GRAGQL+ AL FIK+M ++P  SIWGAL+SA  +HGN ++  +A + L ++EPE+ 
Sbjct: 595 VDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHV 654

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
             +V LSN+YAS+ +W+ V E+R++   +GL+K+PG S + +  K   F   ++ HP   
Sbjct: 655 GYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYE 714

Query: 522 SIYEMLDDL 530
            +Y  L  L
Sbjct: 715 EMYRELTAL 723



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 193/408 (47%), Gaps = 45/408 (11%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  K  H++++    I N  +S KL+  Y   G    ++  F+ IQ++DVY +N +I+
Sbjct: 66  NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125

Query: 95  GYVKNHGHNEALELFS-NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           GY +    +E +  FS  M  S ++PD  T  ++ K    + D   G  IH L++K GF+
Sbjct: 126 GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFM 182

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV +A SL+ +Y +                                  +  V  +R +F
Sbjct: 183 WDVYVAASLIHLYSR----------------------------------YKAVGNARILF 208

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D+M  R++ +W AMI+GY Q+G+  EAL L   ++  D      V++VS+L  C+     
Sbjct: 209 DEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD-----SVTVVSLLSACTEAGDF 263

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           + G  IH ++I+  L  ++ + N LID+Y++ G L   ++VF D  + +D I+W+SI+  
Sbjct: 264 NRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVF-DRMYVRDLISWNSIIKA 322

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y L+ +   A+ L+ +M     +PD +T++ + S   + G I     +    +       
Sbjct: 323 YELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLE 382

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
              I   VV M  + G +D A      +P     S W  ++S    +G
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVIS-WNTIISGYAQNG 429



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 12/183 (6%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           Q  A  + +KL    H ++L  G   + FV T L   Y  CG+   +  +F  I   +  
Sbjct: 463 QAGALRQGMKL----HGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSV 518

Query: 88  LYNSLI--NGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML-I 143
            +N+LI  +G+   HGH E A+ LF  M    V PD  T  T+         ++ G    
Sbjct: 519 PWNTLIACHGF---HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCF 575

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGD 202
             +    G    +     ++ MY + G+    L     M  Q +   W   +S     G+
Sbjct: 576 EMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGN 635

Query: 203 FSL 205
             L
Sbjct: 636 VDL 638


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 167/514 (32%), Positives = 282/514 (54%), Gaps = 28/514 (5%)

Query: 36  LKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVFNSIQ--HKDVYLYNSL 92
           L L ++ H+ +L    ++ N FV++ L+  YA   +   ++ VF+ +   H+ + L+N++
Sbjct: 287 LSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAM 346

Query: 93  INGYVKNHGHNEALELFSNM-YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           + GY +     EALELF+ M   + V P + T+A +       +       +HG  +K G
Sbjct: 347 VCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRG 406

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              +  + N+LM +Y + G       +F  +  R+V SWN  I+G    G      +  R
Sbjct: 407 MADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVR 466

Query: 212 VFDQMKRRNVYAWTAMINGYVQNG--DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
              Q  R          +   ++G    DE  V+           PN V+L+++LP C+ 
Sbjct: 467 EMQQQGR--------FTDATTEDGIAGTDEEPVV-----------PNNVTLMTLLPGCAM 507

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L   + GK+IHG+A+R  L+ D+++ +AL+DMY+KCG L  +R VF D    ++ ITW+ 
Sbjct: 508 LAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVF-DRLPKRNVITWNV 566

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           ++  YG+HG G EA+ L+++MV    +KP+ +T +  L+AC  SG+++ G+E+++S+   
Sbjct: 567 LIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRN 626

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQD 447
           + ++PT ++ AC VD+LGRAG+LD A   I +M P E   S W + + A  +H N  + +
Sbjct: 627 HGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGE 686

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
           +A + L QLEP+  S+YV L N+Y+++  W+  +E+R  M+ RG+ K PGCSWI + G  
Sbjct: 687 IAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVI 746

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           H F   + AHP S  ++  +D L   MR    +P
Sbjct: 747 HRFMAGESAHPESTLVHAHMDALWERMRNQGYTP 780



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 186/422 (44%), Gaps = 42/422 (9%)

Query: 30  SATHRSLKLTKQSHSQIL--SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           +A  RSL   +  H   L   L H   P V+  L+TAYA CG  T +  +FN++  +D  
Sbjct: 69  AAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAMPSRDAV 128

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI-KDLNVGMLIHGL 146
            +NSLI           AL+   +M         FTL ++      + +DL +G   H  
Sbjct: 129 TFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAF 188

Query: 147 SIKIGFV--VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
           ++K GF+   +    N+L+SMY + G   +   LF  +   +            S G   
Sbjct: 189 ALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTD------------SPGG-- 234

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
                           V  W  M++  VQ+G   EA+ +  +M  +  + P+ ++  S L
Sbjct: 235 ---------------GVVTWNTMVSLLVQSGRCGEAIEVIYDMVARG-VRPDGITFASAL 278

Query: 265 PTCSSLIGLSGGKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDCARRVFE-DSSFNK 322
           P CS L  LS G+++H + ++  +L  +  + +AL+DMY+    +  ARRVF+     ++
Sbjct: 279 PACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHR 338

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGVLSACGRSGLINEGLEI 381
               W+++V GY   G   EA+ L+ +M    G  P   TI GVL AC RS     G E 
Sbjct: 339 QLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETF-AGKEA 397

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMH 440
            +  +    +     +   ++D+  R G ++ A        +EP   + W  L++  V+ 
Sbjct: 398 VHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAA--IEPRDVVSWNTLITGCVVQ 455

Query: 441 GN 442
           G+
Sbjct: 456 GH 457



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 137/340 (40%), Gaps = 56/340 (16%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           +  T+   L   A   +    +  H  +L  G   NPFV   L+  YA  G    ++ +F
Sbjct: 375 SETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIF 434

Query: 79  NSIQHKDVYLYNSLING-YVKNHGHNEALELFSNMYYSN------------------VSP 119
            +I+ +DV  +N+LI G  V+ H H+ A +L   M                      V P
Sbjct: 435 AAIEPRDVVSWNTLITGCVVQGHIHD-AFQLVREMQQQGRFTDATTEDGIAGTDEEPVVP 493

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           ++ TL T+      +     G  IHG +++     D+ + ++L+ MY KCG  +    +F
Sbjct: 494 NNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVF 553

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D +P+RNV +WNV                                  +I  Y  +G  DE
Sbjct: 554 DRLPKRNVITWNV----------------------------------LIMAYGMHGLGDE 579

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-HGFAIRKELNHDVSLCNAL 298
           A+ LF  M + +  +PN+V+ ++ L  CS    +  G ++ H       +     L    
Sbjct: 580 AIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACA 639

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAIT-WSSIVSGYGLH 337
           +D+  + G LD A  +       +  ++ WSS +    LH
Sbjct: 640 VDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLH 679



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 146/354 (41%), Gaps = 56/354 (15%)

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKI----GFVVDVILANSLMSMYVKCGKFSEC 175
           D F L   +K +  ++ L     IHG +++     GF   V  AN+L++ Y +CG  +  
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAV--ANALLTAYARCGDLTAA 115

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
           L L                                  F+ M  R+   + ++I       
Sbjct: 116 LAL----------------------------------FNAMPSRDAVTFNSLIAALCLFR 141

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI-GLSGGKQIHGFAIRKE-LNHDVS 293
               AL    +M L+     +  +LVSVL  CS L   L  G++ H FA++   L+ D  
Sbjct: 142 RWLPALDALRDMLLEGH-PLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDER 200

Query: 294 LC-NALIDMYSKCGSLDCARRVF----EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
              NAL+ MY++ G +D A+ +F       S     +TW+++VS     G+  EA+ +  
Sbjct: 201 FAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIY 260

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG-- 406
            MV  G +PD IT    L AC +  +++ G E++  V+    +   + + + +VDM    
Sbjct: 261 DMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASH 320

Query: 407 -RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            R G   R  D +          +W A+V      G   M + A +   ++E E
Sbjct: 321 ERVGVARRVFDMVPGG--HRQLGLWNAMVCGYAQAG---MDEEALELFARMEAE 369


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 160/506 (31%), Positives = 272/506 (53%), Gaps = 36/506 (7%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H   +  G   N  V+  ++  Y  CG   ++  +F+ ++ +D   +N++I  + +N 
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNE 420

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
              + L LF +M  S + PDDFT  ++ K     + LN GM IHG  +K G  +D  + +
Sbjct: 421 EIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGS 480

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
           +L+ MY KCG                                  +++ + ++ D+++ + 
Sbjct: 481 ALVDMYGKCG----------------------------------MLMEAEKIHDRLEEKT 506

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
             +W ++I+G+      + A   F +M L+  + P+  +  +VL  C+++  +  GKQIH
Sbjct: 507 TVSWNSIISGFSSQKQSENAQRYFSQM-LEMGVIPDNFTYATVLDVCANMATIELGKQIH 565

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
              ++  L+ DV + + L+DMYSKCG++  +R +FE +   +D +TWS+++  Y  HG G
Sbjct: 566 AQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTP-KRDYVTWSAMICAYAYHGHG 624

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            +A+ L+ +M  L  KP+    + VL AC   G +++GL  +  + + Y + P  E  +C
Sbjct: 625 EQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSC 684

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+LGR+ Q++ AL  I++M  E    IW  L+S   M GN E+ + A+ SL+QL+P++
Sbjct: 685 MVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQD 744

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
            S YV L+N+YA+   W  VA++R++MK+  LKK PGCSWI +  + H F V DKAHP S
Sbjct: 745 SSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRS 804

Query: 521 VSIYEMLDDLILIMRGAAASPHLGKM 546
             IYE    L+  M+ A   P +  M
Sbjct: 805 EEIYEQTHLLVDEMKWAGYVPDIDSM 830



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 124/539 (23%), Positives = 235/539 (43%), Gaps = 104/539 (19%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST---------------------- 59
           T  H LQ  +  ++L   KQ+H+Q++    +   +V+                       
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 60  ---------KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
                     +I  YA  G    +Q +F+++  +DV  +NSL++ Y+ N  + +++E+F 
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M    +  D  T + + K    I+D  +G+ +H L+I++GF  DV+  ++L+ MY KC 
Sbjct: 128 RMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 171 KFSECLNLFDEMPQRNVGSWNVRIS----------------------------------- 195
           K      +F EMP+RN+  W+  I+                                   
Sbjct: 188 KLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 196 ---------------GHASSGDFS-----------LVVRSRRVFDQMKRRNVY------A 223
                          GHA   DF+           +  +  R+ D  K  N        +
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQS 307

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           + A+I GY +     +AL +F  +Q +  +  +++SL   L  CS + G   G Q+HG A
Sbjct: 308 YNAIIVGYARQDQGLKALEIFQSLQ-RTYLSFDEISLSGALTACSVIKGHLEGIQLHGLA 366

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           ++  L  ++ + N ++DMY KCG+L  A  +F+D    +DA++W++I++ +  + +  + 
Sbjct: 367 VKCGLGFNICVANTILDMYGKCGALVEACTIFDDME-RRDAVSWNAIIAAHEQNEEIVKT 425

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           + L+  M+    +PD  T   V+ AC     +N G+EI+  ++ +  +     + + +VD
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKS-GMGLDWFVGSALVD 484

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE--PEN 460
           M G+ G L  A + I     E +   W +++S       SE     +  ++++   P+N
Sbjct: 485 MYGKCGMLMEA-EKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDN 542



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/521 (22%), Positives = 220/521 (42%), Gaps = 72/521 (13%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT    L+  +      L  Q H   + +G  ++    + L+  Y+ C +   +  +F  
Sbjct: 139 ATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFRE 198

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +  +++  ++++I GYV+N    E L+LF +M    +     T A++ +    +    +G
Sbjct: 199 MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLG 258

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             +HG ++K  F  D I+  + + MY KC + S+   +F+ +P     S+N  I G+A  
Sbjct: 259 TQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQ 318

Query: 201 GD-------FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN------------------- 234
                    F  + R+   FD++         ++I G+++                    
Sbjct: 319 DQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVA 378

Query: 235 ----------GDLDEALVLFLEMQLKDRI------------------------------E 254
                     G L EA  +F +M+ +D +                              E
Sbjct: 379 NTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTME 438

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+  +  SV+  C+    L+ G +IHG  ++  +  D  + +AL+DMY KCG L  A ++
Sbjct: 439 PDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKI 498

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
             D    K  ++W+SI+SG+    +   A   +++M+ +G  PD  T   VL  C     
Sbjct: 499 -HDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMAT 557

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL-DRALDFIKTMPVEPSPSIWGAL 433
           I  G +I+  ++    +     I + +VDM  + G + D  L F KT P     + W A+
Sbjct: 558 IELGKQIHAQILKL-NLHSDVYIASTLVDMYSKCGNMQDSRLMFEKT-PKRDYVT-WSAM 614

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           + A   HG+ E Q +     +QL    P++ + +S L A +
Sbjct: 615 ICAYAYHGHGE-QAIKLFEEMQLLNVKPNHTIFISVLRACA 654



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 148/307 (48%), Gaps = 6/307 (1%)

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
           FT + I +    +K LN G   H   I   FV  + +AN L+  Y K    +    +FD 
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           MP R+V SWN  I G+A  G+      ++ +FD M  R+V +W ++++ Y+ NG   +++
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGF---AQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSI 123

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            +F+ M+   +I  +  +   VL  CS +     G Q+H  AI+    +DV   +AL+DM
Sbjct: 124 EIFVRMR-SLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDM 182

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           YSKC  LD A R+F +    ++ + WS++++GY  + +  E + L+  M+ +G      T
Sbjct: 183 YSKCKKLDGAFRIFREMP-ERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
              V  +C        G +++   + +      + I    +DM  +  ++  A     T+
Sbjct: 242 YASVFRSCAGLSAFKLGTQLHGHALKS-DFAYDSIIGTATLDMYAKCDRMSDAWKVFNTL 300

Query: 422 PVEPSPS 428
           P  P  S
Sbjct: 301 PNPPRQS 307



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 151/330 (45%), Gaps = 40/330 (12%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           ++  A  ++L    + H +I+  G   + FV + L+  Y  CG   +++ + + ++ K  
Sbjct: 448 VKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTT 507

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +NS+I+G+        A   FS M    V PD+FT AT+  +   +  + +G  IH  
Sbjct: 508 VSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQ 567

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            +K+    DV +A++L+ MY KCG   +   +F++ P+R+  +W+               
Sbjct: 568 ILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWS--------------- 612

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                              AMI  Y  +G  ++A+ LF EMQL + ++PN    +SVL  
Sbjct: 613 -------------------AMICAYAYHGHGEQAIKLFEEMQLLN-VKPNHTIFISVLRA 652

Query: 267 CSSLIGLSGGKQIHGFAIRKE---LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           C+ +  +  G  +H F I +    L+  +   + ++D+  +   ++ A ++ E   F  D
Sbjct: 653 CAHMGYVDKG--LHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEAD 710

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
            + W +++S   + G    A   +N ++ L
Sbjct: 711 DVIWRTLLSNCKMQGNVEVAEKAFNSLLQL 740



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 32/212 (15%)

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           K +   +L  CS+L  L+ GKQ H   I       + + N L+  Y K  +++ A +VF+
Sbjct: 6   KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65

Query: 317 ------------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
                                         D+   +D ++W+S++S Y  +G   +++ +
Sbjct: 66  RMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           + +M  L    D  T   VL AC        GL+++   I     +      + +VDM  
Sbjct: 126 FVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQM-GFENDVVTGSALVDMYS 184

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           +  +LD A    + MP E +   W A+++  V
Sbjct: 185 KCKKLDGAFRIFREMP-ERNLVCWSAVIAGYV 215


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 162/506 (32%), Positives = 273/506 (53%), Gaps = 39/506 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K  H+ ++  G   +  +   L++ Y         Q +F+ ++  D+  +N++I    +N
Sbjct: 377 KSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARN 436

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               +A ELF  M  S + P+ +T+ +I     ++  L+ G  IHG  +K    ++  L 
Sbjct: 437 TLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLR 496

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
            +L  MY+ CG  +   +LF+  P R++ S                              
Sbjct: 497 TALADMYMNCGDEATARDLFEGCPDRDLIS------------------------------ 526

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
               W AMI  YV+N    +AL+LF  M      EPN V++++VL + + L  L  G+ +
Sbjct: 527 ----WNAMIASYVKNNQAHKALLLFHRM--ISEAEPNSVTIINVLSSFTHLATLPQGQSL 580

Query: 280 HGFAIRK--ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           H +  R+   L  D+SL NA I MY++CGSL  A  +F+     ++ I+W+++++GYG++
Sbjct: 581 HAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLP-KRNIISWNAMIAGYGMN 639

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G+G +A+L +++M+  G +P+ +T V VLSAC  SG I  GL++++S++  + + P    
Sbjct: 640 GRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVH 699

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            +C+VD+L R G +D A +FI +MP+EP  S+W AL+S+   + +++     ++ L +LE
Sbjct: 700 YSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLE 759

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P N  NYV LSN+YA++  W  V  +RT +K++GL+K PG SWI +  + HCFS  D++H
Sbjct: 760 PMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVHCFSAGDRSH 819

Query: 518 PCSVSIYEMLDDLILIMRGAAASPHL 543
           P S  IY  L  L+  MR     P L
Sbjct: 820 PQSDKIYAKLSILLSSMRETGYDPDL 845



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 209/446 (46%), Gaps = 40/446 (8%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           LV    +   T+   +Q  A   SLKL KQ H   +    + + ++   L+  Y+  G  
Sbjct: 247 LVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSL 306

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             S  +F S+ ++D  L+NS+I+ Y     H EA++LF  M    V  D+ T+  +  + 
Sbjct: 307 ESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMC 366

Query: 132 GEIKD-LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
            E+   L  G  +H   IK G  +D  L N+L+SMY                        
Sbjct: 367 EELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYT----------------------- 403

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
                      + + V   +++FD+MK  ++ +W  MI    +N    +A  LF  M+ +
Sbjct: 404 -----------ELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMR-E 451

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             I+PN  +++S+L  C  +  L  G+ IHG+ ++  +  +  L  AL DMY  CG    
Sbjct: 452 SEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEAT 511

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR +FE    ++D I+W+++++ Y  + + H+A+LL+++M+   ++P+ +TI+ VLS+  
Sbjct: 512 ARDLFEGCP-DRDLISWNAMIASYVKNNQAHKALLLFHRMIS-EAEPNSVTIINVLSSFT 569

Query: 371 RSGLINEGLEIYNSVINT-YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
               + +G  ++  V    + +     +    + M  R G L  A +  KT+P     S 
Sbjct: 570 HLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIIS- 628

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQ 455
           W A+++   M+G      LA+  +++
Sbjct: 629 WNAMIAGYGMNGRGSDAMLAFSQMLE 654



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 183/372 (49%), Gaps = 41/372 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L+  A   +++  K  H  I     + +  V T ++  Y  CG    ++ VF+
Sbjct: 53  NTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFD 112

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           ++  +DV L+N+++ GYV    + EA+ L   M   N+ P+  T+  +        +L +
Sbjct: 113 AMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRL 172

Query: 140 GMLIHGLSIKIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           G  +HG  ++ G F  +  +A +L+  Y++       L LFD M  RN+ SWN  ISG+ 
Sbjct: 173 GRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LFDLMVVRNIVSWNAMISGYY 231

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
             GD+                                   +AL LF++M L D ++ + V
Sbjct: 232 DVGDYF----------------------------------KALELFVQM-LVDEVKFDCV 256

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +++  +  C+ L  L  GKQIH  AI+ E   D+ + NAL++MYS  GSL+ + ++FE S
Sbjct: 257 TMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFE-S 315

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR--SGLIN 376
             N+DA  W+S++S Y   G   EA+ L+ +M   G K D  T+V +LS C    SGL+ 
Sbjct: 316 VPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLL- 374

Query: 377 EGLEIYNSVINT 388
           +G  ++  VI +
Sbjct: 375 KGKSLHAHVIKS 386



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 201/441 (45%), Gaps = 44/441 (9%)

Query: 35  SLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
            L+L +  H   L  G   SNP V+T LI  Y L        L+F+ +  +++  +N++I
Sbjct: 169 ELRLGRGVHGYCLRNGMFDSNPHVATALIGFY-LRFDMRVLPLLFDLMVVRNIVSWNAMI 227

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +GY     + +ALELF  M    V  D  T+    +   E+  L +G  IH L+IK  FV
Sbjct: 228 SGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFV 287

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            D+ + N+L++MY   G       LF+ +P R+   WN                      
Sbjct: 288 EDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWN---------------------- 325

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI-G 272
                       +MI+ Y   G  +EA+ LF+ MQ  + ++ ++ ++V +L  C  L  G
Sbjct: 326 ------------SMISAYAAFGCHEEAMDLFIRMQ-SEGVKKDERTVVIMLSMCEELASG 372

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  GK +H   I+  +  D SL NAL+ MY++   ++  +++F D     D I+W++++ 
Sbjct: 373 LLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIF-DRMKGVDIISWNTMIL 431

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
               +    +A  L+ +M     KP+  TI+ +L+AC     ++ G  I+  V+  + I+
Sbjct: 432 ALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMK-HSIE 490

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
               +   + DM    G    A D  +  P     S W A++++ V +  +    L +  
Sbjct: 491 INQPLRTALADMYMNCGDEATARDLFEGCPDRDLIS-WNAMIASYVKNNQAHKALLLFHR 549

Query: 453 LIQLEPENPSNYVSLSNLYAS 473
           +I    E   N V++ N+ +S
Sbjct: 550 MIS---EAEPNSVTIINVLSS 567



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 152/367 (41%), Gaps = 57/367 (15%)

Query: 1   MILSSARNTFALVTSRNY----------TSATVQHFLQVSATHRSLKLTKQSHSQILSLG 50
           MIL+ ARNT        +           S T+   L        L   +  H  ++   
Sbjct: 429 MILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHS 488

Query: 51  HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
              N  + T L   Y  CG    ++ +F     +D+  +N++I  YVKN+  ++AL LF 
Sbjct: 489 IEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFH 548

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV--VDVILANSLMSMYVK 168
            M  S   P+  T+  +      +  L  G  +H    + GF   +D+ LAN+ ++MY +
Sbjct: 549 RM-ISEAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYAR 607

Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
           CG      N+F  +P+RN+ SWN                                  AMI
Sbjct: 608 CGSLQSAENIFKTLPKRNIISWN----------------------------------AMI 633

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFA 283
            GY  NG   +A++ F +M L+D   PN V+ VSVL  CS    +  G Q     +  F 
Sbjct: 634 AGYGMNGRGSDAMLAFSQM-LEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFN 692

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           +  EL H     + ++D+ ++ G +D AR   +      DA  W +++S    +    +A
Sbjct: 693 VTPELVH----YSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQA 748

Query: 344 VLLYNKM 350
             ++ K+
Sbjct: 749 KTIFEKL 755



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 159/373 (42%), Gaps = 47/373 (12%)

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           IQ KD   +NS+I            L  ++ M    V P++ TL  + K       +  G
Sbjct: 13  IQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERG 72

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             IH        + DV +  +++  Y KCG   +   +FD M  R+V  WN         
Sbjct: 73  KSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWN--------- 123

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                    AM+ GYV  G  +EA++L  EM  ++ + PN  ++
Sbjct: 124 -------------------------AMVYGYVGWGCYEEAMLLVREMG-RENLRPNSRTM 157

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFE--- 316
           V++L  C     L  G+ +HG+ +R  + + +  +  ALI  Y     L    RV     
Sbjct: 158 VALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFY-----LRFDMRVLPLLF 212

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D    ++ ++W++++SGY   G   +A+ L+ +M+    K D +T++  + AC   G + 
Sbjct: 213 DLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLK 272

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            G +I+   I  +       I   +++M    G L+ +    +++P   +P +W +++SA
Sbjct: 273 LGKQIHQLAIK-FEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAP-LWNSMISA 330

Query: 437 SVMHG-NSEMQDL 448
               G + E  DL
Sbjct: 331 YAAFGCHEEAMDL 343


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 285/529 (53%), Gaps = 26/529 (4%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ----SQLVFNSIQHKDVYLY 89
           R+++   Q H+  +  G + +   + +++   A      +    +  +FN +  ++ + +
Sbjct: 34  RTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSW 93

Query: 90  NSLINGYVKNHGHNE--ALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
           N++I G+ ++       A+ LF  M     V P+ FT  ++ K   +   +  G  IHGL
Sbjct: 94  NTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGL 153

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE---------MPQR-----NVGSWNV 192
           ++K GF  D  + ++L+ MYV CG   +   LF +         M  R      +  WNV
Sbjct: 154 ALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNV 213

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
            I G+   GD      +R +FD+M++R+V +W  MI+GY  NG   +A+ +F EM+  D 
Sbjct: 214 MIDGYMRLGDCKA---ARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD- 269

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           I PN V+LVSVLP  S L  L  G+ +H +A    +  D  L +ALIDMYSKCG ++ A 
Sbjct: 270 IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAI 329

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
            VFE     ++ ITWS++++G+ +HG+  +A+  + KM   G +P  +  + +L+AC   
Sbjct: 330 HVFERLP-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHG 388

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           GL+ EG   ++ +++   ++P  E   C+VD+LGR+G LD A +FI  MP++P   IW A
Sbjct: 389 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKA 448

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
           L+ A  M GN EM       L+ + P +   YV+LSN+YAS   W  V+E+R  MK++ +
Sbjct: 449 LLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDI 508

Query: 493 KKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           +K PGCS I I G  H F V D +HP +  I  ML ++   +R A   P
Sbjct: 509 RKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRP 557



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/363 (19%), Positives = 143/363 (39%), Gaps = 81/363 (22%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC------------- 68
           T    L+  A    ++  KQ H   L  G   + FV + L+  Y +C             
Sbjct: 130 TFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKN 189

Query: 69  --------------------------------GQPTQSQLVFNSIQHKDVYLYNSLINGY 96
                                           G    ++++F+ ++ + V  +N++I+GY
Sbjct: 190 IIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 249

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
             N    +A+E+F  M   ++ P+  TL ++      +  L +G  +H  +   G  +D 
Sbjct: 250 SLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDD 309

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           +L ++L+ MY KCG   + +++F+ +P+ NV +W                          
Sbjct: 310 VLGSALIDMYSKCGIIEKAIHVFERLPRENVITW-------------------------- 343

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
                   +AMING+  +G   +A+  F +M+ +  + P+ V+ +++L  CS    +  G
Sbjct: 344 --------SAMINGFAIHGQAGDAIDCFCKMR-QAGVRPSDVAYINLLTACSHGGLVEEG 394

Query: 277 KQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           ++     +  + L   +     ++D+  + G LD A     +     D + W +++    
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACR 454

Query: 336 LHG 338
           + G
Sbjct: 455 MQG 457


>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 168/503 (33%), Positives = 296/503 (58%), Gaps = 13/503 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT----QSQLVFNSIQHKDVYLYN 90
           ++K  K+ HSQ++  G   +   +++++   A C  P      + LVF  IQ+ +++ +N
Sbjct: 34  TMKDLKKIHSQLIKTGLAKDTNAASRIL---AFCASPAGDINYAYLVFVQIQNPNIFAWN 90

Query: 91  SLINGYVKNHGHNEALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           ++I G+ ++     ++ L+ +M   S V P   T  ++ K   ++   + G  +HG  IK
Sbjct: 91  TIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIK 150

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           +G   D  + N+++ MYV CG  SE   +FD     ++ +WN  I G A  G   LV  S
Sbjct: 151 LGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCG---LVDES 207

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           RR+FD+M  RN  +W +MI+GYV+NG   +AL LF +MQ+ +RIEP++ ++VS+L  C+ 
Sbjct: 208 RRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQV-ERIEPSEFTMVSLLNACAC 266

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  +  G+ IH + ++K+   +  +  A+IDMYSKCGS+D A +VF+ S+  +    W+S
Sbjct: 267 LGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQ-SAPRRGLSCWNS 325

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++ G  ++G+ +EA+ L++ +     +PD ++ + VL+AC  +G++++  + +  + + Y
Sbjct: 326 MILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKY 385

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
           +IKP  +  +C+VD+LGRAG L+ A + I++M V+P   IWG+L+ +   +GN +M   A
Sbjct: 386 KIKPGIKHFSCMVDVLGRAGLLEEAEELIRSMHVDPDAIIWGSLLWSCCKYGNIKMAKRA 445

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
              LI+L P   S++V ++N YA++  ++   + R  +K+  + K PGCS I + G+ H 
Sbjct: 446 ANHLIELNPSESSSFVLVANAYAAANNFEEALKERLTLKENHIGKEPGCSCIEVGGEVHE 505

Query: 510 FSVADKAHPCSVSIYEMLDDLIL 532
           F    +AHP    IY +LD L L
Sbjct: 506 FVAGGRAHPEIKEIYRVLDVLTL 528


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 171/536 (31%), Positives = 286/536 (53%), Gaps = 38/536 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLI--TAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           RSLK  KQ H+ +   G  ++P ++ KL+  +A ++      ++ +F    + DV+++N+
Sbjct: 16  RSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNT 75

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSP-DDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           LI G  ++     +L  F  M     +P D F+ A + K +   + L  G+ +H  +I  
Sbjct: 76  LIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVH 135

Query: 151 GFVVDVILANSLMSMYVKCG-------KFSECLN------------------------LF 179
           G    + +  +L+SMY +CG        F E                           +F
Sbjct: 136 GLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMF 195

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           + MP RN+ SWNV ++G+  +G+  L   +R++F +M  ++  +W+ MI G+  NG   E
Sbjct: 196 NRMPFRNLTSWNVMLAGYTKAGELEL---ARKLFLEMPVKDDVSWSTMIVGFAHNGFFYE 252

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           A   F E+Q +  + PN+VSL   L  C+    +  GK +HGF  +      VS+ NAL+
Sbjct: 253 AFGFFRELQ-QVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALL 311

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           D YSKCG++  AR VFE     +  ++W+S+++G  +HG G EA+ L+++M   G +PD 
Sbjct: 312 DTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDG 371

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           I  + +L AC  +GLI +G E +  + + Y I+P  E   C+VD+ GRAGQLD+A +FI 
Sbjct: 372 IAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFII 431

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            MPV P+  IW  L+ A  +HGN ++ +   + L +L+P N  ++V LSN+YA + +W  
Sbjct: 432 HMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKD 491

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           VA +R  M D+ + K+PG S I +    + F   +  +  +   YE L +++L +R
Sbjct: 492 VAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLR 547


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 170/501 (33%), Positives = 260/501 (51%), Gaps = 71/501 (14%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           S+  V   L+  YA C     ++  F  I+  D+  +N+++ GY     H EA+EL S M
Sbjct: 396 SDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEM 455

Query: 113 YYSNVSPD--------------------------------DFTLATIS---KLSGEIKDL 137
            +  + PD                                D    TIS      G++++L
Sbjct: 456 KFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNL 515

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            +G  IHG  ++    +   + ++L+SMY  C       ++F E+  R+V  WN  IS  
Sbjct: 516 KLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISAC 575

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A SG                 R+V                  AL L  EM L + +E N 
Sbjct: 576 AQSG-----------------RSV-----------------NALDLLREMNLSN-VEVNT 600

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           V++VS LP CS L  L  GK+IH F IR  L+    + N+LIDMY +CGS+  +RR+F D
Sbjct: 601 VTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF-D 659

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               +D ++W+ ++S YG+HG G +AV L+     +G KP+ IT   +LSAC  SGLI E
Sbjct: 660 LMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEE 719

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G + +  +   Y + P  E  AC+VD+L RAGQ +  L+FI+ MP EP+ ++WG+L+ A 
Sbjct: 720 GWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGAC 779

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
            +H N ++ + A + L +LEP++  NYV ++N+Y+++ RW+  A++R +MK+RG+ K PG
Sbjct: 780 RIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPG 839

Query: 498 CSWISIHGKTHCFSVADKAHP 518
           CSWI +  K H F V D +HP
Sbjct: 840 CSWIEVKRKLHSFVVGDTSHP 860



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 227/491 (46%), Gaps = 79/491 (16%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           LQ      +L+L  Q H+Q++  G     F+ ++L+  Y   G    ++ +F+ +  ++V
Sbjct: 96  LQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNV 155

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
           + + +++  Y     + E ++LF  M    V PD F    + K   E+K+  VG  ++  
Sbjct: 156 FSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDY 215

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            + IGF  +  +  S++ M++KCG+       F+E+  ++V  WN+ +SG+ S G+F   
Sbjct: 216 MLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK-- 273

Query: 207 VRSRRVFDQMKRRNV----YAWTAMINGYVQNGDLDEALVLFLEM-QLKD---------- 251
            ++ +    MK   V      W A+I+GY Q+G  +EA   FLEM  LKD          
Sbjct: 274 -KALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTA 332

Query: 252 ------------------------RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-K 286
                                    ++PN +++ S +  C++L  L  G++IHG+ I+ +
Sbjct: 333 LIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVE 392

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVF------------------------EDS---- 318
           EL+ D+ + N+L+D Y+KC S++ ARR F                        E++    
Sbjct: 393 ELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELL 452

Query: 319 ------SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
                     D ITW+ +V+G+  +G G  A+  + +M  +G  P+  TI G L+ACG+ 
Sbjct: 453 SEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQV 512

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
             +  G EI+  V+  + I+ +T + + ++ M      L+ A      +       +W +
Sbjct: 513 RNLKLGKEIHGYVLRNH-IELSTGVGSALISMYSGCDSLEVACSVFSELSTR-DVVVWNS 570

Query: 433 LVSASVMHGNS 443
           ++SA    G S
Sbjct: 571 IISACAQSGRS 581



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 181/391 (46%), Gaps = 17/391 (4%)

Query: 61  LITAYALCGQPTQSQLVFNSIQ-----HKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           +I+ YA  GQ  ++   F  +        +V  + +LI G  +N    EAL +F  M   
Sbjct: 297 IISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLE 356

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSE 174
            V P+  T+A+       +  L  G  IHG  IK+  +  D+++ NSL+  Y KC     
Sbjct: 357 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 416

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWTAMING 230
               F  + Q ++ SWN  ++G+A  G     +    +  +MK +    ++  W  ++ G
Sbjct: 417 ARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAI---ELLSEMKFQGIEPDIITWNGLVTG 473

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           + Q GD   AL  F  M     ++PN  ++   L  C  +  L  GK+IHG+ +R  +  
Sbjct: 474 FTQYGDGKAALEFFQRMHSMG-MDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIEL 532

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
              + +ALI MYS C SL+ A  VF + S  +D + W+SI+S     G+   A+ L  +M
Sbjct: 533 STGVGSALISMYSGCDSLEVACSVFSELS-TRDVVVWNSIISACAQSGRSVNALDLLREM 591

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
                + + +T+V  L AC +   + +G EI+  +I    +     I   ++DM GR G 
Sbjct: 592 NLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRC-GLDTCNFILNSLIDMYGRCGS 650

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + ++      MP     S W  ++S   MHG
Sbjct: 651 IQKSRRIFDLMPQRDLVS-WNVMISVYGMHG 680



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 140/329 (42%), Gaps = 40/329 (12%)

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFT--LATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           +N   N A  L S+M  +N  PD+     A+I +   ++ +L +G  +H   +  G  V 
Sbjct: 66  RNGVLNNAAMLLSSMDLTN--PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVC 123

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             L + L+ +Y + G   +   +FD+M +RNV SW                         
Sbjct: 124 EFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSW------------------------- 158

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
                    TA++  Y   GD +E + LF  M + + + P+      V   CS L     
Sbjct: 159 ---------TAIMEMYCGLGDYEETIKLFYLM-VNEGVRPDHFVFPKVFKACSELKNYRV 208

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK ++ + +      +  +  +++DM+ KCG +D ARR FE+  F KD   W+ +VSGY 
Sbjct: 209 GKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF-KDVFMWNIMVSGYT 267

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
             G+  +A+   + M   G KPD +T   ++S   +SG   E  + +  +      KP  
Sbjct: 268 SKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNV 327

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVE 424
                ++    + G    AL   + M +E
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLE 356



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 132/320 (41%), Gaps = 38/320 (11%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVF 78
           + T+   L      R+LKL K+ H  +L   HI  +  V + LI+ Y+ C     +  VF
Sbjct: 499 TTTISGALAACGQVRNLKLGKEIHGYVLR-NHIELSTGVGSALISMYSGCDSLEVACSVF 557

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  +DV ++NS+I+   ++     AL+L   M  SNV  +  T+ +      ++  L 
Sbjct: 558 SELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR 617

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  IH   I+ G      + NSL+ MY +CG   +   +FD MPQR++ SWNV IS + 
Sbjct: 618 QGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYG 677

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
             G F +                              D       F  M LK    PN +
Sbjct: 678 MHG-FGM------------------------------DAVNLFQXFRTMGLK----PNHI 702

Query: 259 SLVSVLPTCS-SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           +  ++L  CS S +   G K          ++  V     ++D+ S+ G  +      E 
Sbjct: 703 TFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEK 762

Query: 318 SSFNKDAITWSSIVSGYGLH 337
             F  +A  W S++    +H
Sbjct: 763 MPFEPNAAVWGSLLGACRIH 782



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 123/293 (41%), Gaps = 42/293 (14%)

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           +NG L+ A +L   M L +  E  ++   S+L  C  L  L  G Q+H   +   ++   
Sbjct: 66  RNGVLNNAAMLLSSMDLTNPDECIEI-YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCE 124

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            L + L+++Y + G ++ ARR+F+  S  ++  +W++I+  Y   G   E + L+  MV 
Sbjct: 125 FLGSRLLEVYCQTGCVEDARRMFDKMS-ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN 183

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G +PD      V  AC        G ++Y+ ++ +   +  + +   ++DM  + G++D
Sbjct: 184 EGVRPDHFVFPKVFKACSELKNYRVGKDVYDYML-SIGFEGNSCVKGSILDMFIKCGRMD 242

Query: 413 RALDFIKTMP----------------------------------VEPSPSIWGALVSASV 438
            A  F + +                                   V+P    W A++S   
Sbjct: 243 IARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYA 302

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR----WDAVAELRTMM 487
             G  E     +  +  L+   P N VS + L A S +    ++A++  R M+
Sbjct: 303 QSGQFEEASKYFLEMGGLKDFKP-NVVSWTALIAGSEQNGYDFEALSVFRKMV 354



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 106/264 (40%), Gaps = 9/264 (3%)

Query: 8   NTFALVTSRNYTSATVQHFLQVSATHRSLKLT-----KQSHSQILSLGHISNPFVSTKLI 62
           N   L+   N ++  V     VSA     KL      K+ H  I+  G  +  F+   LI
Sbjct: 583 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLI 642

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
             Y  CG   +S+ +F+ +  +D+  +N +I+ Y  +    +A+ LF       + P+  
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHI 702

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFD 180
           T   +         +  G     + +K  + +D  +     ++ +  + G+F+E L   +
Sbjct: 703 TFTNLLSACSHSGLIEEGWKYFKM-MKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIE 761

Query: 181 EMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           +MP + N   W   +       +  L   + R   +++ ++   +  M N Y   G  ++
Sbjct: 762 KMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWED 821

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSV 263
           A  +   M+ +   +P   S + V
Sbjct: 822 AAKIRCLMKERGVTKPPGCSWIEV 845


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 166/509 (32%), Positives = 265/509 (52%), Gaps = 49/509 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+   T  +  L +Q H+Q+L  G   N +VS+ LI  YA  G+   +  +F  +
Sbjct: 440 TYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRL 499

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           +  DV  + ++I GY ++    EAL LF  M    +  D+   A+       I+ L+ G 
Sbjct: 500 KENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGR 559

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH  S   G+  D+ + N+L+S+Y +CGK  E                           
Sbjct: 560 QIHAQSCLSGYSDDLSIGNALVSLYARCGKVRE--------------------------- 592

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  +   FDQ+  ++  +W ++++G+ Q+G  +EAL +F +M  K  +E N  +  
Sbjct: 593 -------AYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMN-KAGLEINSFTFG 644

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S +   +++  +  GKQIHG   +   + +  + NALI +Y+KCG++D            
Sbjct: 645 SAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTID------------ 692

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
              I+W+S+++GY  HG G EA+ L+  M  L   P+ +T VGVLSAC   GL++EG+  
Sbjct: 693 --DISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISY 750

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + S+   + + P  E  ACVVD+LGR+G L RA  F++ MP++P   +W  L+SA  +H 
Sbjct: 751 FRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHK 810

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N ++ + A   L++LEP++ + YV +SN+YA S +WD     R MMKDRG+KK PG SW+
Sbjct: 811 NIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWV 870

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            +    H F   D+ HP +  IYE L  L
Sbjct: 871 EVDNSVHAFFAGDQNHPRADMIYEYLRGL 899



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 189/432 (43%), Gaps = 61/432 (14%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
            +  KQ H  +L  G  S  +V   L+T Y+  G  + ++ +F+ +  +D   YNSLI+G
Sbjct: 267 FEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISG 326

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
             +    N AL LF  M      PD  T+A++      +  L  G   H  +IK G   D
Sbjct: 327 LAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSD 386

Query: 156 VILANSLMSMYVKCG------KFSEC----------LNLFDEMP---------------- 183
           +++  SL+ +YVKC       +F  C            +F +M                 
Sbjct: 387 IVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILK 446

Query: 184 -----------------------QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
                                  Q NV   +V I  +A  G       + ++F ++K  +
Sbjct: 447 TCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLD---HALKIFRRLKEND 503

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
           V +WTAMI GY Q+    EAL LF EMQ    I+ + +   S +  C+ +  L  G+QIH
Sbjct: 504 VVSWTAMIAGYTQHDKFTEALNLFKEMQ-DQGIKSDNIGFASAISACAGIQALDQGRQIH 562

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
             +     + D+S+ NAL+ +Y++CG +  A   F D  + KD ++W+S+VSG+   G  
Sbjct: 563 AQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAF-DQIYAKDNVSWNSLVSGFAQSGYF 621

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            EA+ ++ +M   G + +  T    +SA      +  G +I+  +  T      TE+   
Sbjct: 622 EEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKT-GYDSETEVSNA 680

Query: 401 VVDMLGRAGQLD 412
           ++ +  + G +D
Sbjct: 681 LITLYAKCGTID 692



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 210/466 (45%), Gaps = 78/466 (16%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           S +  +Q H++ ++ G  S+ F+   LI  Y   G  + ++ VF +++ +D   + ++I+
Sbjct: 179 SFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMIS 238

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G  +N    EA+ LF  +  S  +  +F                 G  +HGL +K GF  
Sbjct: 239 GLSQNGYEEEAMLLFCQIVLSACTKVEF--------------FEFGKQLHGLVLKQGFSS 284

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +  + N+L+++Y + G  S    +F  M QR+  S+N  ISG A  G    + R+  +F 
Sbjct: 285 ETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQG---YINRALALFK 341

Query: 215 QM----------------------------KRRNVYAWTA-----------MINGYVQNG 235
           +M                            K+ + YA  A           +++ YV+  
Sbjct: 342 KMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCS 401

Query: 236 D----------------LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           D                L+++  +F +MQ++  I PN+ +  S+L TC++L     G+QI
Sbjct: 402 DIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEG-IVPNQFTYPSILKTCTTLGATDLGEQI 460

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H   ++     +V + + LIDMY+K G LD A ++F     N D ++W+++++GY  H K
Sbjct: 461 HTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKEN-DVVSWTAMIAGYTQHDK 519

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY-NSVINTYRIKPTTEIC 398
             EA+ L+ +M   G K D I     +SAC     +++G +I+  S ++ Y       I 
Sbjct: 520 FTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGY--SDDLSIG 577

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
             +V +  R G++  A      +  + + S W +LVS     G  E
Sbjct: 578 NALVSLYARCGKVREAYAAFDQIYAKDNVS-WNSLVSGFAQSGYFE 622



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 196/469 (41%), Gaps = 85/469 (18%)

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           KLI  Y   G    +  VF+ +  + +  +N + N ++          LF  M   NV  
Sbjct: 102 KLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEF 161

Query: 120 DDFTLATISK-LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           D+   A + +  SG          IH  +I  GF     + N L+ +Y K G  S    +
Sbjct: 162 DERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKV 221

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F+ +  R+  SW                                   AMI+G  QNG  +
Sbjct: 222 FENLKARDSVSW----------------------------------VAMISGLSQNGYEE 247

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
           EA++LF ++               VL  C+ +     GKQ+HG  +++  + +  +CNAL
Sbjct: 248 EAMLLFCQI---------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNAL 292

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           + +YS+ G+L  A ++F   S  +D ++++S++SG    G  + A+ L+ KM     KPD
Sbjct: 293 VTLYSRSGNLSSAEQIFHCMS-QRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPD 351

Query: 359 IITIVGVLSACGRSGLINEGLEIYN---------------SVINTY----RIKPTTEICA 399
            +T+  +LSAC   G +  G + ++               S+++ Y     IK   E   
Sbjct: 352 CVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFL 411

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVE---PSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           C     G+   L+++      M +E   P+   + +++      G +++ +  +  +++ 
Sbjct: 412 C----YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKT 467

Query: 457 EPENPSNYVS--LSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
             +  + YVS  L ++YA   + D   ++      R LK++   SW ++
Sbjct: 468 GFQ-FNVYVSSVLIDMYAKHGKLDHALKIF-----RRLKENDVVSWTAM 510


>gi|326504782|dbj|BAK06682.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 686

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 186/546 (34%), Positives = 282/546 (51%), Gaps = 55/546 (10%)

Query: 1   MILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLT-------------KQSHSQIL 47
           ++ +++R  F L      TS  ++H+L + A H +                 + +H+  L
Sbjct: 160 LLHAASRLAFRL----RLTSLALRHYLALRAGHPAFLPPAAAIGDVLKSVPGRVAHAHGL 215

Query: 48  SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ--HKDVYLYNSLINGYVKNHGHNEA 105
            L      F+   LI  Y  CG   +++ VF+ ++   +DV  + SLI+  V++    +A
Sbjct: 216 RLTDGDTRFLHNSLIPMYFSCGDAGRARRVFDGMRDCERDVVSWTSLISRLVQSGSPLQA 275

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           L LF+ M   +V PD   L T+ K   E+ DL      H L +K GF  +  +  +L +M
Sbjct: 276 LRLFAAMMCCDVRPDFVLLVTVLKAYMELDDLPGAQSAHSLVVKGGFDDEQDVVTTLTAM 335

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y K G       LFD +P   V                                NV  W 
Sbjct: 336 YAKFGCIVAARALFDRIPPPRV--------------------------------NVILWN 363

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           AMI+GY +NG   EA+ LF +MQ+  R + P+ V+L SV+  C+ L        +  +  
Sbjct: 364 AMISGYSKNGLASEAVHLFKQMQVFARSMSPDSVTLRSVIMACAQLGSTELAVWMEDYVR 423

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEA 343
           R E   DV +  ALIDMY+K GS+  ARRVFE   +  +D + WS+++SGYG HG   EA
Sbjct: 424 RSECREDVLVNTALIDMYAKSGSIAHARRVFEQMHAQERDVVVWSALISGYGAHGHLAEA 483

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           V L+  M   G KP+ +T +G+LSAC  +G + +G   ++S+   ++I+P  +  ACVVD
Sbjct: 484 VGLFEDMKLAGVKPNDVTFLGLLSACNHAGAVEKGWFYFHSMKPDHKIEPRHQHYACVVD 543

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM--HGNSEMQDLAYKSLIQLEPENP 461
           +L RAGQLDRA  FI  MP++P  S+WGAL+    M  H N  M + A + + +LE  N 
Sbjct: 544 LLARAGQLDRAYRFILDMPIKPEMSVWGALLHGCKMHEHSNMAMAERAAQHIFELEQSNA 603

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
            +YV L+N+YAS+  W  VA +R  M++RG+ K+ GCS I + G+TH F   D +HP + 
Sbjct: 604 GHYVQLANMYASAGMWSHVAGVRATMRERGVTKATGCSSIEVDGETHNFHAWDHSHPRAA 663

Query: 522 SIYEML 527
            I+ +L
Sbjct: 664 EIFALL 669


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 186/541 (34%), Positives = 278/541 (51%), Gaps = 70/541 (12%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           LI+ +   G  ++++ VF+++  ++V  + S++ GYV+N    EA  LF +M + NV   
Sbjct: 92  LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSW 151

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
              L  + +  G + D     L   +  K     DV+   +++  Y + G+  E   LFD
Sbjct: 152 TVMLGGLLQ-EGRVDDAR--KLFDMMPEK-----DVVAVTNMIGGYCEEGRLDEARALFD 203

Query: 181 EMPQRNVG-------------------------------SWNVRISGHASSG-------- 201
           EMP+RNV                                SW   + G+  SG        
Sbjct: 204 EMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSL 263

Query: 202 -----------------DFSL---VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
                             F L   V ++RRVF  MK R+   W+AMI  Y + G   EAL
Sbjct: 264 FDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEAL 323

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            LF  MQ ++ +  N  SL+SVL  C SL  L  GKQ+H   +R E + D+ + + LI M
Sbjct: 324 GLFRRMQ-REGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITM 382

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y KCG+L  A++VF      KD + W+S+++GY  HG G EA+ +++ M   G  PD +T
Sbjct: 383 YVKCGNLVRAKQVFNRFPL-KDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVT 441

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
            +GVLSAC  SG + EGLE++ ++   Y+++P  E  AC+VD+LGRA Q++ A+  ++ M
Sbjct: 442 FIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKM 501

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
           P+EP   +WGAL+ A   H   ++ ++A + L QLEP+N   YV LSN+YA   RW  V 
Sbjct: 502 PMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVE 561

Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD-KAHPCSVSIYEMLDDLILIMRGAAAS 540
            LR  +K R + K PGCSWI +  K H F+  D K HP    I +ML+ L  ++R A   
Sbjct: 562 VLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYC 621

Query: 541 P 541
           P
Sbjct: 622 P 622



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 145/298 (48%), Gaps = 24/298 (8%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N++++ Y +  +  E L LF++MPQRN  SWN  ISGH  +G  S    +RRVFD M  R
Sbjct: 59  NAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLS---EARRVFDTMPDR 115

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV +WT+M+ GYV+NGD+ EA  LF  M  K     N VS   +L        +   +++
Sbjct: 116 NVVSWTSMVRGYVRNGDVAEAERLFWHMPHK-----NVVSWTVMLGGLLQEGRVDDARKL 170

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
                 K    DV     +I  Y + G LD AR +F D    ++ +TW+++VSGY  +GK
Sbjct: 171 FDMMPEK----DVVAVTNMIGGYCEEGRLDEARALF-DEMPKRNVVTWTAMVSGYARNGK 225

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
              A  L+  M     + + ++   +L     SG + E     +S+ +   +KP   +C 
Sbjct: 226 VDVARKLFEVM----PERNEVSWTAMLLGYTHSGRMREA----SSLFDAMPVKPVV-VCN 276

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            ++   G  G++D+A    K M  E     W A++      G  E++ L     +Q E
Sbjct: 277 EMIMGFGLNGEVDKARRVFKGMK-ERDNGTWSAMIKVYERKG-YELEALGLFRRMQRE 332



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 67/289 (23%)

Query: 194 ISGHASSGDFSLVVRSRRVFDQ--MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
           I+ +A +G       +R+VFD+  +  R V +W AM+  Y +     EAL+LF +M  + 
Sbjct: 29  IACYARNGQLD---HARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR- 84

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
               N VS                                    N LI  + K G L  A
Sbjct: 85  ----NTVSW-----------------------------------NGLISGHIKNGMLSEA 105

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
           RRVF D+  +++ ++W+S+V GY  +G   EA  L+  M       ++++   +L    +
Sbjct: 106 RRVF-DTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHM----PHKNVVSWTVMLGGLLQ 160

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG---RAGQLDRALDFIKTMPVEPSPS 428
            G +++  ++++       + P  ++ A V +M+G     G+LD A      MP + +  
Sbjct: 161 EGRVDDARKLFD-------MMPEKDVVA-VTNMIGGYCEEGRLDEARALFDEMP-KRNVV 211

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPE-NPSNYVSLSNLYASSRR 476
            W A+VS    +G     D+A K L ++ PE N  ++ ++   Y  S R
Sbjct: 212 TWTAMVSGYARNGKV---DVARK-LFEVMPERNEVSWTAMLLGYTHSGR 256



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 93/198 (46%), Gaps = 20/198 (10%)

Query: 299 IDMYSKCGSLDCARRVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           I  Y++ G LD AR+VF+++   ++   +W+++V+ Y    +  EA+LL+ KM     + 
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM----PQR 84

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           + ++  G++S   ++G+++E   +++++ +   +  T+ +   V     R G +  A   
Sbjct: 85  NTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYV-----RNGDVAEAERL 139

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL---YASS 474
              MP +   S W  ++   +  G  +      + L  + PE   + V+++N+   Y   
Sbjct: 140 FWHMPHKNVVS-WTVMLGGLLQEGRVD----DARKLFDMMPEK--DVVAVTNMIGGYCEE 192

Query: 475 RRWDAVAELRTMMKDRGL 492
            R D    L   M  R +
Sbjct: 193 GRLDEARALFDEMPKRNV 210


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 180/594 (30%), Positives = 295/594 (49%), Gaps = 81/594 (13%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL-CGQPTQS 74
           +NY S  +  F Q+          K  H+++L L H+        LI   AL  G    S
Sbjct: 19  KNYLSNGLNFFNQL----------KHIHARLLRL-HLDQDNYLLNLILCCALDFGSTNYS 67

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI 134
           +LVF+ ++  +++L+N++I G V     ++A+ L+ +M      P++FT+  + K     
Sbjct: 68  KLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARK 127

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
            D+ +G+ IH L +K G+  DV +  SL+S+YVKC  F + L +FD++P +NV SW   I
Sbjct: 128 LDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAII 187

Query: 195 SGHASSGDFSLVVRS------------------------------------RRVFDQMKR 218
           +G+ SSG F   + +                                    R + D    
Sbjct: 188 TGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMG 247

Query: 219 RNVYAWTAMINGYVQNGDLD-------------------------------EALVLFLEM 247
           RNV+  T++++ YV+ G+L+                               +AL LF +M
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
           Q  + ++P+  ++V VL  C++L  L  G        R E   +  L  ALIDMYSKCGS
Sbjct: 308 Q-SENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           +  A  +F      KD + W++++ G  ++G       L++ +   G +PD  T +G+L 
Sbjct: 367 VTQAWEIFTAMK-RKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLC 425

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
            C   G +NEG + +N++   + + P+ E   C+VD+LGRAG L+ A   I  MP++P+ 
Sbjct: 426 GCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNA 485

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
            +WGAL+    +H ++ + +   K LI+LEP N  NYV LSN+Y+ + RW+   ++R+ M
Sbjct: 486 VVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTM 545

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           K++ ++K   CSWI I G  H F V DK+H  S  IY  LD+L   ++     P
Sbjct: 546 KEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVP 599


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 172/516 (33%), Positives = 273/516 (52%), Gaps = 39/516 (7%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           Y  +     L+     R+++  +Q H+++L  G   +  ++T+L+  YA CG  + ++ V
Sbjct: 66  YNHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRV 125

Query: 78  FNSIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIK 135
           F+ + ++ +V+L+N LI  Y ++     A+EL+  M  Y ++ PD+FT   + K    + 
Sbjct: 126 FDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALL 185

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           DL+ G  +H   ++  +  DV +   L+ MY KCG   E              +W V   
Sbjct: 186 DLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDE--------------AWAV--- 228

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
                            F+    R+   W +MI    QNG   EAL L   M   + I P
Sbjct: 229 -----------------FNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMA-AEGIAP 270

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
              +LVS +   +    L  G+++HG+  R+       L  +L+DMY+K G +  A  +F
Sbjct: 271 TIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLF 330

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGL 374
           E    +++ I+W++++ G+G+HG    A  L+++M       PD IT VGVLSAC   G+
Sbjct: 331 E-QLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGM 389

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           + E  E+++ ++  Y IKPT +   C+VD+LG +G+   A D IK M V+P   IWGAL+
Sbjct: 390 VQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALL 449

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
           +   +H N E+ +LA + LI+LEPE+  NYV LSN+YA S +W+  A +R +M +RGLKK
Sbjct: 450 NGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLKK 509

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
              CSWI + GK H F V D +HP S  IYE L+ L
Sbjct: 510 IIACSWIELKGKFHGFLVGDASHPRSDDIYEELERL 545


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 180/594 (30%), Positives = 295/594 (49%), Gaps = 81/594 (13%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL-CGQPTQS 74
           +NY S  +  F Q+          K  H+++L L H+        LI   AL  G    S
Sbjct: 19  KNYLSNGLNFFNQL----------KHIHARLLRL-HLDQDNYLLNLILCCALDFGSTNYS 67

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI 134
           +LVF+ ++  +++L+N++I G V     ++A+ L+ +M      P++FT+  + K     
Sbjct: 68  KLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARK 127

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
            D+ +G+ IH L +K G+  DV +  SL+S+YVKC  F + L +FD++P +NV SW   I
Sbjct: 128 LDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAII 187

Query: 195 SGHASSGDFSLVVRS------------------------------------RRVFDQMKR 218
           +G+ SSG F   + +                                    R + D    
Sbjct: 188 TGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMG 247

Query: 219 RNVYAWTAMINGYVQNGDLD-------------------------------EALVLFLEM 247
           RNV+  T++++ YV+ G+L+                               +AL LF +M
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
           Q  + ++P+  ++V VL  C++L  L  G        R E   +  L  ALIDMYSKCGS
Sbjct: 308 Q-SENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           +  A  +F      KD + W++++ G  ++G       L++ +   G +PD  T +G+L 
Sbjct: 367 VTQAWEIFTAMK-KKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLC 425

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
            C   G +NEG + +N++   + + P+ E   C+VD+LGRAG L+ A   I  MP++P+ 
Sbjct: 426 GCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNA 485

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
            +WGAL+    +H ++ + +   K LI+LEP N  NYV LSN+Y+ + RW+   ++R+ M
Sbjct: 486 VVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTM 545

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           K++ ++K   CSWI I G  H F V DK+H  S  IY  LD+L   ++     P
Sbjct: 546 KEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVP 599


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 165/500 (33%), Positives = 270/500 (54%), Gaps = 35/500 (7%)

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F ++Q+ +V ++N+LI G V      +AL  + +M  +NV P  ++ +++ K    + D 
Sbjct: 33  FANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDS 92

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
             G  +HG   K GF   V +  +L+  Y   G       +FD+MP+R+V +W   IS H
Sbjct: 93  AFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAH 152

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE--- 254
              GD +    + R+FD+M  +NV  W AMI+GY + G+ + A  LF +M  +D I    
Sbjct: 153 VRDGDMA---SAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTT 209

Query: 255 ---------------------------PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
                                      P++V++ +V+  C+ L  L+ GK++H + + + 
Sbjct: 210 MMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQG 269

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
            + DV + ++LIDMY+KCGS+D A  VF      K+   W+ I+ G   HG   EA+ ++
Sbjct: 270 FDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQ-TKNLFCWNCIIDGLATHGYVEEALRMF 328

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            +M     +P+ +T + +L+AC  +G I EG   + S++  Y I P  E   C+VD+L +
Sbjct: 329 GEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSK 388

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           AG L+ AL+ I+ M VEP+  IWGAL++   +H N E+  +A ++L+ LEP N  +Y  L
Sbjct: 389 AGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLL 448

Query: 468 SNLYASSRRWDAVAELRTMMKDRGL-KKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEM 526
            N+YA   RW+ VA++RT MKD G+ K+ PG SW+ I+   H F+ +D  HP    ++ +
Sbjct: 449 VNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTVHLFAASDTYHPSYSQLHLL 508

Query: 527 LDDLILIMRGAAASPHLGKM 546
           L +L   +R A   P LG +
Sbjct: 509 LAELDDQLRLAGYVPELGSI 528



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 131/282 (46%), Gaps = 44/282 (15%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +I  Y   G    ++ +FN +  +D+  + +++N Y +N  + E + LF ++    + PD
Sbjct: 179 MIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPD 238

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
           + T+ T+      +  L +G  +H   +  GF +DV + +SL+ MY KCG     L +F 
Sbjct: 239 EVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFY 298

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
           ++  +N+  WN  I G A+                             +GYV+     EA
Sbjct: 299 KLQTKNLFCWNCIIDGLAT-----------------------------HGYVE-----EA 324

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSLC 295
           L +F EM+ K RI PN V+ +S+L  C+    +  G++     +  + I  ++ H     
Sbjct: 325 LRMFGEMERK-RIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEH----Y 379

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
             ++D+ SK G L+ A  +  + +   ++  W ++++G  LH
Sbjct: 380 GCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLH 421



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L L K+ H  ++  G   + ++ + LI  YA CG    + LVF  +Q K+++ +N +I+
Sbjct: 254 ALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIID 313

Query: 95  GYVKNHGH-NEALELFSNMYYSNVSPDDFTLATI 127
           G +  HG+  EAL +F  M    + P+  T  +I
Sbjct: 314 G-LATHGYVEEALRMFGEMERKRIRPNAVTFISI 346


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 185/591 (31%), Positives = 300/591 (50%), Gaps = 75/591 (12%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT+  FL VSAT   L    Q H+  +  G  S   V+  L++ YA C        +F  
Sbjct: 248 ATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGL 307

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +   D+  +N +I+G V+N   ++AL LF +M  S + PD  TL ++     ++   N G
Sbjct: 308 MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQG 367

Query: 141 MLIHGLSIK---------------IGF----------------VVDVILANSLMSMYVKC 169
             +HG  ++               I F                 +DV++ ++++S YV  
Sbjct: 368 KELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLN 427

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISG--------------------------------- 196
           G   E + +F  + ++ +    V I+                                  
Sbjct: 428 GMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE 487

Query: 197 ------HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
                 +A  G   L   S  +F ++  ++   W +MI+ + QNG+ +EAL LF EM ++
Sbjct: 488 SALMDMYAKCGRLDL---SHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCME 544

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             ++ + V++ SVL  C+SL  +  GK+IHG  I+  +  D+   +ALIDMY KCG+L+ 
Sbjct: 545 G-VKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEW 603

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           A RVFE S   K+ ++W+SI++ YG +G   E+V L   M   G K D +T + ++SAC 
Sbjct: 604 AHRVFE-SMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACA 662

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
            +G + EGL ++  +   Y+I P  E  AC+VD+  RAG+LD+A++ I  MP +P   IW
Sbjct: 663 HAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIW 722

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
           GAL+ A  +H N E+ ++A + L +L+P N   YV +SN+ A + RWD V+++R +MKD 
Sbjct: 723 GALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDT 782

Query: 491 GLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            ++K PG SW+ ++  +H F  ADK+HP S  IY  L  ++L +R     P
Sbjct: 783 KVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELREEGYIP 833



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 132/426 (30%), Positives = 222/426 (52%), Gaps = 40/426 (9%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T  + ++  A   ++ L +  H    +LG   + FV + LI  YA  G    ++ VF+
Sbjct: 146 SHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFD 205

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  +D  L+N +++GYVK    + A+ELF +M  S   P+  TLA    +S    DL  
Sbjct: 206 GMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFF 265

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G+ +H L++K G   +V +AN+L+SMY KC    +   LF  MP+ ++ +WN        
Sbjct: 266 GVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWN-------- 317

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                      MI+G VQNG +D+AL+LF +MQ K  I P+ V+
Sbjct: 318 --------------------------GMISGCVQNGFVDQALLLFCDMQ-KSGIRPDSVT 350

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           LVS+LP  + L G + GK++HG+ +R  ++ DV L +AL+D+Y KC ++  A+ V+ DSS
Sbjct: 351 LVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVY-DSS 409

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
              D +  S+++SGY L+G   EAV ++  ++  G +P+ + I  VL AC     +  G 
Sbjct: 410 KAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQ 469

Query: 380 EIYNSVI-NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           E+++  + N Y  +   E  + ++DM  + G+LD +  +I +         W +++S+  
Sbjct: 470 ELHSYALKNAYEGRCYVE--SALMDMYAKCGRLDLS-HYIFSKISAKDEVTWNSMISSFA 526

Query: 439 MHGNSE 444
            +G  E
Sbjct: 527 QNGEPE 532



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 166/365 (45%), Gaps = 44/365 (12%)

Query: 29  VSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           VS +H SL L  Q H + ++ G H ++  + T+L+  Y L  +   +  VF+S+      
Sbjct: 50  VSPSHLSLGL--QVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAA 107

Query: 88  L---YNSLINGYVKNHGHNEALELFSNMYY--SNVSPDDFTLATISKLSGEIKDLNVGML 142
               +N LI G      +  AL  +  M+   S   PD  T   + K    +  + +G L
Sbjct: 108 CALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRL 167

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H  +  +G   D+ + ++L+ MY   G                                
Sbjct: 168 VHRTARTLGLDGDMFVGSALIKMYANGG-------------------------------- 195

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
             L+  +R+VFD M  R+   W  M++GYV+ G +  A+ LF +M+     EPN  +L  
Sbjct: 196 --LLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASG-CEPNFATLAC 252

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L   ++   L  G Q+H  A++  L  +V++ N L+ MY+KC  LD   ++F       
Sbjct: 253 FLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMP-RD 311

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D +TW+ ++SG   +G   +A+LL+  M   G +PD +T+V +L A       N+G E++
Sbjct: 312 DLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELH 371

Query: 383 NSVIN 387
             ++ 
Sbjct: 372 GYIVR 376



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 139/322 (43%), Gaps = 42/322 (13%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           +  +   L   A+  ++KL ++ HS  L   +    +V + L+  YA CG+   S  +F+
Sbjct: 449 AVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFS 508

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I  KD   +NS+I+ + +N    EAL LF  M    V   + T++++      +  +  
Sbjct: 509 KISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYY 568

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IHG+ IK     D+   ++L+ MY KCG       +F+ MP++N  SWN  I   AS
Sbjct: 569 GKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSII---AS 625

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYA----WTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
            G + LV  S  +   M+     A    + A+++     G + E L LF  M  + +I P
Sbjct: 626 YGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAP 685

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
                                 ++  FA              ++D+YS+ G LD A  + 
Sbjct: 686 ----------------------RMEHFA-------------CMVDLYSRAGKLDKAMELI 710

Query: 316 EDSSFNKDAITWSSIVSGYGLH 337
            D  F  DA  W +++    +H
Sbjct: 711 VDMPFKPDAGIWGALLHACRVH 732



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 131/307 (42%), Gaps = 36/307 (11%)

Query: 137 LNVGMLIHGLSIKIGF-VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           L++G+ +HG ++  G    D  L   L+ MYV   +F + + +F  +P+           
Sbjct: 55  LSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPR----------- 103

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE- 254
           G A+                        W  +I G    GD   AL+ +L+M        
Sbjct: 104 GAAACA--------------------LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPL 143

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+  +   V+ +C++L  ++ G+ +H  A    L+ D+ + +ALI MY+  G L  AR+V
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQV 203

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F D    +D + W+ ++ GY   G    AV L+  M   G +P+  T+   LS       
Sbjct: 204 F-DGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESD 262

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +  G++++   +  Y ++    +   +V M  +   LD        MP +   + W  ++
Sbjct: 263 LFFGVQLHTLAVK-YGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVT-WNGMI 320

Query: 435 SASVMHG 441
           S  V +G
Sbjct: 321 SGCVQNG 327



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 2/177 (1%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            Y++ T+   L   A+  ++   K+ H  ++     ++ F  + LI  Y  CG    +  
Sbjct: 547 KYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHR 606

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF S+  K+   +NS+I  Y       E++ L  +M       D  T   +         
Sbjct: 607 VFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQ 666

Query: 137 LNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWN 191
           +  G+ L   ++ +      +     ++ +Y + GK  + + L  +MP + + G W 
Sbjct: 667 VQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWG 723



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 11/190 (5%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNH-DVSLCNALIDMYSKCGSLDCARRVFEDS 318
           L++VL  C S   LS G Q+HG A+   L+  D +L   L+ MY        A  VF  S
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVF--S 99

Query: 319 SFNKD----AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK--PDIITIVGVLSACGRS 372
           S  +     A+ W+ ++ G  + G    A+L Y KM    S   PD  T   V+ +C   
Sbjct: 100 SLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAAL 159

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           G I  G  ++ +   T  +     + + ++ M    G L  A      M  E    +W  
Sbjct: 160 GAIALGRLVHRTA-RTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGM-AERDCVLWNV 217

Query: 433 LVSASVMHGN 442
           ++   V  G+
Sbjct: 218 MMDGYVKAGS 227


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 168/514 (32%), Positives = 270/514 (52%), Gaps = 14/514 (2%)

Query: 35  SLKLTKQSHSQILSLGHISN--PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL 92
           ++   ++ HS ILSL H ++  PF++  LI  Y  CG+   ++ +F S+  ++V+ +   
Sbjct: 75  AISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVA 134

Query: 93  INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI--SKLSGEIKDLNVGMLIHGLSIKI 150
           +  +  N  H+EAL  F  MY S   PD  T + I  +        ++ G  IH  +   
Sbjct: 135 MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 194

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G + +V++  +++SMY KCG+  +    F+E+  +N  +WN  ++ +   G      R R
Sbjct: 195 GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDG------RDR 248

Query: 211 R---VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
               +F +M   +   W AMI  Y Q+G   +AL L+  M     + P + + V+V+  C
Sbjct: 249 EALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVC 308

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           + L  L  G+ IH        + ++ + NAL+ MY KCG LD A  VF      KD I+W
Sbjct: 309 AELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKL-KDEISW 367

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++I+S Y  HG   +A+LLY +M   G KP  +T VG+LSAC   GL+ +GL+ +  + +
Sbjct: 368 NTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQD 427

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            +RIKP+     C++D+LGR G+L  A   +K+MP++ +   W +L+ A   HG+ +   
Sbjct: 428 DHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGV 487

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A   ++   P     YV LSN+YA++ RW  V ++R +M  RG+KKSPG SWI I    
Sbjct: 488 RAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVV 547

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           H F   D +HP    IY  L  ++  M+G    P
Sbjct: 548 HEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVP 581



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 21/214 (9%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           + V A   +LK  +  H+++ +    +N  VS  L+  Y  CG   ++  VF+S++ KD 
Sbjct: 305 IDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDE 364

Query: 87  YLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
             +N++I+ Y   HGH ++AL L+  M    V P + T   +          + G++  G
Sbjct: 365 ISWNTIISSYA-YHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACS-----HGGLVADG 418

Query: 146 LSIKIGFVVDVILANS------LMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHA 198
           L        D  +  S      ++ +  + G+ +E   +   MP Q N   W   +    
Sbjct: 419 LDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACK 478

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
           + GD     R  R  DQ+  R    WT+   GYV
Sbjct: 479 THGDLK---RGVRAADQVVDR--VPWTS--GGYV 505


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 169/523 (32%), Positives = 279/523 (53%), Gaps = 36/523 (6%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + TV   L + A    +      H  ++  G  S+ FVS  LI  Y+  G+   +Q VF+
Sbjct: 248 TVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFD 307

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            ++ +D+  +NS+I  Y +N     AL  F  M +  + PD  T+ +++ + G++ D  +
Sbjct: 308 GMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRI 367

Query: 140 GMLIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           G  +HG  ++  ++ VD+++ N+L++MY K G   +C                       
Sbjct: 368 GRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSI-DC----------------------- 403

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                     +R VF+Q+  R+V +W  +I GY QNG   EA+  +  M+    I PN+ 
Sbjct: 404 ----------ARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQG 453

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           + VS+LP  S +  L  G +IHG  I+  L  DV +   LIDMY KCG L+ A  +F + 
Sbjct: 454 TWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEI 513

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              + ++ W++I+S  G+HG G +A+ L+  M   G K D IT V +LSAC  SGL++E 
Sbjct: 514 P-QETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEA 572

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
              ++++   YRIKP  +   C+VD+ GRAG L++A + +  MP++   SIWG L++A  
Sbjct: 573 QWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACR 632

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           +HGN+E+   A   L++++ EN   YV LSN+YA+  +W+   ++R++ +DRGL+K+PG 
Sbjct: 633 IHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGW 692

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           S + +      F   +++HP    IYE L  L   M+     P
Sbjct: 693 SSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVP 735



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 134/492 (27%), Positives = 235/492 (47%), Gaps = 83/492 (16%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           ++ + KQ H+ +L LG   +  + T+L+T YA  G  + S   F  IQ K+++ +NS+++
Sbjct: 63  NINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVS 122

Query: 95  GYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            YV+   + ++++  + +   S V PD +T   + K    + D   G  +H   +K+GF 
Sbjct: 123 AYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFE 179

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV +A SL+ +Y + G       +F +MP R+VGSWN  ISG   +G+   V  + RV 
Sbjct: 180 HDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGN---VAEALRVL 236

Query: 214 DQMKRR---------------------------------------NVYAWTAMINGYVQN 234
           D+MK                                         +V+   A+IN Y + 
Sbjct: 237 DRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKF 296

Query: 235 GDLDEALVLFLEMQLKDRI------------------------------EPNKVSLVSVL 264
           G L +A  +F  M+++D +                               P+ +++VS+ 
Sbjct: 297 GRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLA 356

Query: 265 PTCSSLIGLSGGKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
                L     G+ +HGF +R + L  D+ + NAL++MY+K GS+DCAR VFE    ++D
Sbjct: 357 SIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLP-SRD 415

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK--PDIITIVGVLSACGRSGLINEGLEI 381
            I+W+++++GY  +G   EA+  YN M+  G    P+  T V +L A    G + +G++I
Sbjct: 416 VISWNTLITGYAQNGLASEAIDAYN-MMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKI 474

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  +I          +  C++DM G+ G+L+ A+     +P E S   W A++S+  +HG
Sbjct: 475 HGRLIKNCLFLDVF-VATCLIDMYGKCGRLEDAMSLFYEIPQETSVP-WNAIISSLGIHG 532

Query: 442 NSEMQDLAYKSL 453
           + E     +K +
Sbjct: 533 HGEKALQLFKDM 544


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 174/567 (30%), Positives = 281/567 (49%), Gaps = 70/567 (12%)

Query: 42  SHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101
           +H  ++ LG  +   V   LI+ YA       + LVF+ + H+D   +NS+I+G   N  
Sbjct: 432 AHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGL 491

Query: 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
           ++EA+ELF  M+      D  TL ++           VG ++HG S+K G + +  LAN+
Sbjct: 492 NSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANA 551

Query: 162 LMSM-------------------------------YVKCGKFSECLNLFDEMPQRNVGSW 190
           L+ M                               Y + G F +   L  EM    +   
Sbjct: 552 LLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPD 611

Query: 191 NVRISG--HASSGDFSL----------------------------------VVRSRRVFD 214
              ++   H  +GD SL                                  +  +R VFD
Sbjct: 612 VFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFD 671

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            +  +++ +W  +I GY +N   +E+  LF +M L+   +PN V++  +LP  +S+  L 
Sbjct: 672 HVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ--FKPNTVTMTCILPAVASISSLE 729

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G++IH +A+R+    D    NAL+DMY KCG+L  AR +F D    K+ I+W+ +++GY
Sbjct: 730 RGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLF-DRLTKKNLISWTIMIAGY 788

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
           G+HG G +AV L+ +M   G +PD  +   +L AC  SGL  EG + +N++   Y+I+P 
Sbjct: 789 GMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPK 848

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            +   C+VD+L   G L  A +FI++MP+EP  SIW +L+    +H + ++ +     + 
Sbjct: 849 LKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVF 908

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEPEN   YV L+N+YA + RW+AV +L+  +  RGL+++ GCSWI + GK H F   +
Sbjct: 909 KLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADN 968

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASP 541
           + HP    I E LD +   MR     P
Sbjct: 969 RNHPEWNRIAEFLDHVARRMREEGHDP 995



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 218/470 (46%), Gaps = 62/470 (13%)

Query: 27  LQVSATHRSLKLTKQSHSQILS-LGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK- 84
           +Q+    RSL+  +++H+ + +  G I    +  +L+ AY  CG    +++VF+ +  + 
Sbjct: 101 VQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRV 160

Query: 85  -DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
            DV ++ SL++ Y K     E + LF  M    VSPD   ++ + K    +  +  G +I
Sbjct: 161 ADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVI 220

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HGL  K+G      +AN+L+++Y +CG    C+   D M                     
Sbjct: 221 HGLLEKLGLGEACAVANALIALYSRCG----CME--DAM--------------------- 253

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                  +VFD M  R+  +W + I+GY  NG  D A+ LF +M   +  E + V+++SV
Sbjct: 254 -------QVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKM-WSEGTEISSVTVLSV 305

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDV---------SLCNALIDMYSKCGSLDCARRV 314
           LP C+ L     GK +HG++++  L  D+         +L + L+ MY KCG +  ARRV
Sbjct: 306 LPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRV 365

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD------IITIVGVLSA 368
           F+      +   W+ I+ GY    +  E++LL+ +M  LG  PD      ++  +  LS 
Sbjct: 366 FDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLS- 424

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
           C R GL+  G  +               +C  ++    ++  +D A+     MP + + S
Sbjct: 425 CARDGLVAHGYLV------KLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTIS 478

Query: 429 IWGALVSASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
            W +++S    +G NSE  +L  +  +Q    + +  +S+    A S  W
Sbjct: 479 -WNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYW 527



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 158/331 (47%), Gaps = 37/331 (11%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           + +KL+  Y  CG    ++ VF+++  K +V+++N ++ GY K     E+L LF  M+  
Sbjct: 345 LGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHEL 404

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
            ++PD+  L+ + K    +     G++ HG  +K+GF     + N+L+S Y K       
Sbjct: 405 GITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNA 464

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
           + +FD MP ++  SWN                                  ++I+G   NG
Sbjct: 465 VLVFDRMPHQDTISWN----------------------------------SVISGCTSNG 490

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
              EA+ LF+ M ++   E +  +L+SVLP C+       G+ +HG++++  L  + SL 
Sbjct: 491 LNSEAIELFVRMWMQGH-ELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLA 549

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           NAL+DMYS C       ++F + +  K+ ++W+++++ Y   G   +   L  +MV  G 
Sbjct: 550 NALLDMYSNCSDWHSTNQIFRNMA-QKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGI 608

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           KPD+  +  VL        + +G  ++   I
Sbjct: 609 KPDVFAVTSVLHGFAGDESLKQGKSVHGYAI 639



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 152/345 (44%), Gaps = 53/345 (15%)

Query: 126 TISKLSGEIKDLNVGMLIHGL-SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
            + +L GE + L      H L     G ++  +L   L+  Y+KCG       +FDEMP 
Sbjct: 99  AVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPP 158

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
                                     RV D      V  WT++++ Y + GD  E + LF
Sbjct: 159 --------------------------RVAD------VRVWTSLMSAYAKAGDFQEGVSLF 186

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
            +MQ    + P+  ++  VL   +SL  ++ G+ IHG   +  L    ++ NALI +YS+
Sbjct: 187 RQMQCCG-VSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSR 245

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           CG ++ A +VF DS   +DAI+W+S +SGY  +G    AV L++KM   G++   +T++ 
Sbjct: 246 CGCMEDAMQVF-DSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLS 304

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKP-------------TTEICACVVDMLGRAGQL 411
           VL AC        G E+   V++ Y +K                 + + +V M  + G +
Sbjct: 305 VLPACAEL-----GFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDM 359

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             A      MP + +  +W  ++         E   L ++ + +L
Sbjct: 360 GSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHEL 404



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 139/319 (43%), Gaps = 41/319 (12%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
            V   L   A   SLK  K  H   +  G      V+  L+  Y  C    +++LVF+ +
Sbjct: 614 AVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHV 673

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            +KD+  +N+LI GY +N+  NE+  LFS+M      P+  T+  I      I  L  G 
Sbjct: 674 TNKDIISWNTLIGGYSRNNFANESFSLFSDMLL-QFKPNTVTMTCILPAVASISSLERGR 732

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH  +++ GF+ D   +N+L+ MYVKCG       LFD + ++N+ SW           
Sbjct: 733 EIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISW----------- 781

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                  T MI GY  +G   +A+ LF +M+    +EP+  S  
Sbjct: 782 -----------------------TIMIAGYGMHGCGKDAVALFEQMR-GSGVEPDTASFS 817

Query: 262 SVL-PTCSSLIGLSGGKQIHGFAIRKELNHDVSL--CNALIDMYSKCGSLDCARRVFEDS 318
           ++L   C S +   G K  +  A+RKE   +  L     ++D+ S  G+L  A    E  
Sbjct: 818 AILYACCHSGLTAEGWKFFN--AMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESM 875

Query: 319 SFNKDAITWSSIVSGYGLH 337
               D+  W S++ G  +H
Sbjct: 876 PIEPDSSIWVSLLHGCRIH 894



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 53/108 (49%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L   A+  SL+  ++ H+  L  G + + + S  L+  Y  CG    ++++F+
Sbjct: 712 TVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFD 771

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            +  K++  +  +I GY  +    +A+ LF  M  S V PD  + + I
Sbjct: 772 RLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAI 819


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 163/504 (32%), Positives = 273/504 (54%), Gaps = 53/504 (10%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           S+PF+ST+LI AYA  G    ++ VF+    K+++++N+L+         +EAL   ++M
Sbjct: 106 SDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLADM 165

Query: 113 YYSNVSPDDFTL-----------ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
               V  D ++            A+ +  S  +++      +H  +I+ G+ +   +A +
Sbjct: 166 GRLGVPVDSYSYTHGLKACIAVSASHAPASARVRE------VHAHAIRRGYALHTHVATT 219

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+  Y K G                                  +V  +  VF  M  RNV
Sbjct: 220 LIDCYAKLG----------------------------------IVRYAESVFAAMPERNV 245

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
            +W+AMI  Y +N    +A+ LF +M   D  + PN +++VSVL  C+ +  LS GK +H
Sbjct: 246 VSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALSHGKLLH 305

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
            + +R+  +  VS+ NAL+ MY +CG L+  R +F+     +D ++W+S++SGYG+HG G
Sbjct: 306 AYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMHGFG 365

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            EAV ++ +M+ +G  P IIT + VL AC  +GL+NEG  ++ S++  Y + P  E  AC
Sbjct: 366 PEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGKMLFESMVE-YGVTPRAEHYAC 424

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+LGRAGQLD A++ I++M +EPSP +WGAL+ A  +HG+ E  ++A   L  LEP N
Sbjct: 425 MVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACRIHGHVEYAEIACSHLFDLEPRN 484

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
             NYV L+++YA ++  + V  L+ ++++  L+K  GCSWI +  K H F+  D  +P  
Sbjct: 485 AGNYVLLADIYARAKLHNQVGVLKELLEEHALEKVTGCSWIEVKKKLHSFTSVDNKNPPV 544

Query: 521 VSIYEMLDDLILIMRGAAASPHLG 544
             +  ++ + +  M+     P  G
Sbjct: 545 EQLQALIGEFVAQMKNQGYVPDTG 568



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 147/330 (44%), Gaps = 40/330 (12%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKL-TKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           V S +YT   ++  + VSA+H       ++ H+  +  G+  +  V+T LI  YA  G  
Sbjct: 172 VDSYSYTHG-LKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAKLGIV 230

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS--PDDFTLATISK 129
             ++ VF ++  ++V  ++++I  Y KN    +A+ELF +M  S+    P+  T+ ++  
Sbjct: 231 RYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLN 290

Query: 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVG 188
               +  L+ G L+H   ++ GF   V + N+LM+MY++CG      ++F  +  +R+V 
Sbjct: 291 ACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVV 350

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           SWN                                  ++I+GY  +G   EA+ +F EM 
Sbjct: 351 SWN----------------------------------SLISGYGMHGFGPEAVQVFEEM- 375

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
           +     P+ ++ +SVL  CS    ++ GK +    +   +         ++D+  + G L
Sbjct: 376 IHVGFSPSIITFISVLGACSHAGLVNEGKMLFESMVEYGVTPRAEHYACMVDLLGRAGQL 435

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           D A  +            W +++    +HG
Sbjct: 436 DEAMELIRSMHIEPSPQVWGALLGACRIHG 465



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 115/292 (39%), Gaps = 28/292 (9%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   K  H+ IL  G  S   V   L+  Y  CG     + +F 
Sbjct: 282 SITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFK 341

Query: 80  SIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
            I H+ DV  +NSLI+GY  +    EA+++F  M +   SP   T  ++         +N
Sbjct: 342 WIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVN 401

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM---PQRNVGSWNV--- 192
            G ++    ++ G          ++ +  + G+  E + L   M   P   V  W     
Sbjct: 402 EGKMLFESMVEYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQV--WGALLG 459

Query: 193 --RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
             RI GH    + +       +FD ++ RN   +  + + Y +    ++  V      LK
Sbjct: 460 ACRIHGHVEYAEIA----CSHLFD-LEPRNAGNYVLLADIYARAKLHNQVGV------LK 508

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302
           + +E + +  V+    CS    +   K++H F      N  V    ALI  +
Sbjct: 509 ELLEEHALEKVT---GCS---WIEVKKKLHSFTSVDNKNPPVEQLQALIGEF 554


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 173/539 (32%), Positives = 282/539 (52%), Gaps = 46/539 (8%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L    N T  T +H +   A   SL      H +++S G   +PF++TKLI  Y   G  
Sbjct: 70  LCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSI 129

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA------ 125
            +++ VF+  + + +Y++N+L           E L+L+  M +  +  D FT        
Sbjct: 130 DRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKAC 189

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
            +S+LS  +  L  G  IH   ++ G+  ++ +  +L+ +Y K G  S   ++F  MP +
Sbjct: 190 VVSELS--VSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTK 247

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
           N  S                                  W+AMI  + +N    +AL LF 
Sbjct: 248 NFVS----------------------------------WSAMIACFAKNEMPMKALELFQ 273

Query: 246 EMQLK--DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
            M L+  D + PN V++V+VL  C+ L  L  GK IHG+ +R+ L+  + + NALI MY 
Sbjct: 274 LMMLEAHDSV-PNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYG 332

Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
           +CG +   +RVF D+  N+D ++W+S++S YG+HG G +A+ ++  M+  GS P  I+ +
Sbjct: 333 RCGEILMGQRVF-DNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFI 391

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
            VL AC  +GL+ EG  ++ S+++ YRI P  E  AC+VD+LGRA +LD A+  I+ M  
Sbjct: 392 TVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHF 451

Query: 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483
           EP P++WG+L+ +  +H N E+ + A   L +LEP N  NYV L+++YA ++ W     +
Sbjct: 452 EPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSV 511

Query: 484 RTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
             +++ RGL+K PGCSWI +  K + F   D+ +P    I+ +L  L   M+     P 
Sbjct: 512 MKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQ 570


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 171/533 (32%), Positives = 282/533 (52%), Gaps = 48/533 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNS 80
           T+   L   +    L+  K+ H+  L  G +  N FV + L+  Y  C Q      VF+ 
Sbjct: 300 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDG 359

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNV 139
           +  + + L+N++I GY +N    EAL LF  M  S  +  +  T+A +          + 
Sbjct: 360 MFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              IHG  +K G   D  + N+LM MY + GK                            
Sbjct: 420 KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKID-------------------------- 453

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR------- 252
                    ++R+F +M+ R++  W  +I GYV +   ++AL++  +MQ+ +R       
Sbjct: 454 --------IAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERAS 505

Query: 253 ---IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
              ++PN ++L+++LP+C++L  L+ GK+IH +AI+  L  DV++ +AL+DMY+KCG L 
Sbjct: 506 RVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQ 565

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            +R+VF+     ++ ITW+ IV  YG+HG   +A+ +   M+  G KP+ +T + V +AC
Sbjct: 566 MSRKVFDQIPI-RNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAAC 624

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE-PSPS 428
             SG++NEGL+I+ ++   Y ++P+++  ACVVD+LGRAG++  A   I  +P       
Sbjct: 625 SHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAG 684

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
            W +L+ A  +H N E+ ++A ++LIQLEP   S+YV L+N+Y+S+  W    E+R  MK
Sbjct: 685 AWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMK 744

Query: 489 DRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            +G++K PGCSWI    + H F   D +HP S  +   L+ L   MR     P
Sbjct: 745 AQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIP 797



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 187/425 (44%), Gaps = 45/425 (10%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
            L+  A  + + L KQ H+ +   G+ + +  V+  L+  Y  CG       VF+ I  +
Sbjct: 99  LLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 158

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI---KDLNVGM 141
           +   +NSLI+          ALE F  M   +V P  FTL +++         + L +G 
Sbjct: 159 NQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGK 218

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   ++ G +   I+ N+L++MY K GK +    L      R++ +WN  +S      
Sbjct: 219 QVHAYGLRKGELNSFII-NTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLS------ 271

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                          QN    EAL    EM L+  +EP+  ++ 
Sbjct: 272 ----------------------------SLCQNEQFLEALEYLREMVLEG-VEPDGFTIS 302

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           SVLP CS L  L  GK++H +A++   L+ +  + +AL+DMY  C  +    RVF D  F
Sbjct: 303 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVF-DGMF 361

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLINEGL 379
           ++    W+++++GY  +    EA+LL+ +M    G   +  T+ GV+ AC RSG  ++  
Sbjct: 362 DRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKE 421

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            I+  V+    +     +   ++DM  R G++D A      M  +     W  +++  V 
Sbjct: 422 AIHGFVVKR-GLDRDRFVQNALMDMYSRLGKIDIAKRIFGKME-DRDLVTWNTIITGYVF 479

Query: 440 HGNSE 444
               E
Sbjct: 480 SERHE 484



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 195/429 (45%), Gaps = 57/429 (13%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           + L  ++Q H  +L     + P   T  + A  + G P++    F S  H   + +  L+
Sbjct: 16  QPLPFSRQKHPYLLR----ATPTSVTDDV-ASTVYGAPSK----FISQSHSPEW-WIDLL 65

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
              V+++   EA+  + +M    + PD+F    + K   +++D+++G  IH    K G+ 
Sbjct: 66  RSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYG 125

Query: 154 VD-VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
           VD V +AN+L+++Y KCG                               DF  V +   V
Sbjct: 126 VDSVTVANTLVNLYRKCG-------------------------------DFGAVYK---V 151

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI- 271
           FD++  RN  +W ++I+        + AL  F  M L + +EP+  +LVSV   CS+   
Sbjct: 152 FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM-LDEDVEPSSFTLVSVALACSNFPM 210

Query: 272 --GLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
             GL  GKQ+H + +RK ELN  +   N L+ MY K G L  + +V   S   +D +TW+
Sbjct: 211 PEGLLMGKQVHAYGLRKGELNSFI--INTLVAMYGKMGKL-ASSKVLLGSFEGRDLVTWN 267

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +++S    + +  EA+    +MV  G +PD  TI  VL AC    ++  G E++   +  
Sbjct: 268 TVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKN 327

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
             +   + + + +VDM     Q+         M  +    +W A+++    +  +E  + 
Sbjct: 328 GSLDENSFVGSALVDMYCNCKQVLSGCRVFDGM-FDRKIGLWNAMITG---YAQNEYDEE 383

Query: 449 AYKSLIQLE 457
           A    I++E
Sbjct: 384 ALLLFIEME 392



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 118/255 (46%), Gaps = 10/255 (3%)

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           W  ++   V++  L EA++ +++M +   I+P+  +  ++L   + L  +  GKQIH   
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLG-IKPDNFAFPALLKAVADLQDMDLGKQIHAHV 119

Query: 284 IRKELNHD-VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            +     D V++ N L+++Y KCG      +VF+  S  ++ ++W+S++S      K   
Sbjct: 120 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRIS-ERNQVSWNSLISSLCSFEKWEM 178

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP---TTEICA 399
           A+  +  M+    +P   T+V V  AC    +  EGL +    ++ Y ++     + I  
Sbjct: 179 ALEAFRCMLDEDVEPSSFTLVSVALACSNFPM-PEGL-LMGKQVHAYGLRKGELNSFIIN 236

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            +V M G+ G+L  +   + +       + W  ++S S+      ++ L Y   + LE  
Sbjct: 237 TLVAMYGKMGKLASSKVLLGSFEGRDLVT-WNTVLS-SLCQNEQFLEALEYLREMVLEGV 294

Query: 460 NPSNYVSLSNLYASS 474
            P  +   S L A S
Sbjct: 295 EPDGFTISSVLPACS 309



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 76/180 (42%), Gaps = 13/180 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   +L   K+ H+  +     ++  V + L+  YA CG    S+ VF+
Sbjct: 513 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 572

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I  ++V  +N ++  Y  +    +A+++   M    V P++ T  ++          + 
Sbjct: 573 QIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACS-----HS 627

Query: 140 GMLIHGLSIKIGFVVDVILANS------LMSMYVKCGKFSECLNLFDEMPQR--NVGSWN 191
           GM+  GL I      D  +  S      ++ +  + G+  E   L + +P+     G+W+
Sbjct: 628 GMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWS 687


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 172/491 (35%), Positives = 275/491 (56%), Gaps = 26/491 (5%)

Query: 45  QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
           Q+    H+S   +   L+ A    G+  +++ +F+ +  +DV  + ++++GY +     E
Sbjct: 137 QMPERNHVSYTVLLGGLLDA----GRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV---DVILANS 161
           A  LF  M   NV      ++  + +SG  ++  V      L+ K+  V+   + +   +
Sbjct: 193 ARALFDEMPKRNV------VSWTAMISGYAQNGEVN-----LARKLFEVMPERNEVSWTA 241

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           ++  Y++ G   +   LF+ MP+  V + N  + G    G   +V  ++ VF++M  R+ 
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG---MVDAAKTVFEKMCERDD 298

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
             W+AMI  Y QN  L EAL  F EM  +  + PN  S++S+L  C++L  L  G+++H 
Sbjct: 299 GTWSAMIKAYEQNEFLMEALSTFREMLWRG-VRPNYPSVISILTVCAALAVLDYGREVHA 357

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN-KDAITWSSIVSGYGLHGKG 340
             +R   + DV   +ALI MY KCG+LD A+RVF   +F  KD + W+S+++GY  HG G
Sbjct: 358 AMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFH--TFEPKDIVMWNSMITGYAQHGLG 415

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            +A+ +++ M   G  PD IT +G L+AC  +G + EG EI+NS+     I+P  E  +C
Sbjct: 416 EQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSC 475

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+LGR+G ++ A D IK MPVEP   IWGAL+ A  MH N+E+ + A K L++LEP N
Sbjct: 476 MVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGN 535

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK-AHPC 519
              YV LS++Y S  RW+  +++R  +  R L KSPGCSWI    + H F+  D  AHP 
Sbjct: 536 AGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPE 595

Query: 520 SVSIYEMLDDL 530
             +I  +L+ L
Sbjct: 596 HAAILRILEKL 606



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 198/436 (45%), Gaps = 37/436 (8%)

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           I   A  G    ++  F ++  +    YN+L+ GY +N   + AL LF  M   +++  +
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYN 83

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
             ++ +S     + D    +        I F   V+   SL+  YV+ G  ++ + LF +
Sbjct: 84  ALISGLSLRRQTLPDAAAAL------ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQ 137

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           MP+RN  S+ V + G   +G    V  +RR+FD+M  R+V AWTAM++GY Q G + EA 
Sbjct: 138 MPERNHVSYTVLLGGLLDAGR---VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 242 VLFLEMQLKDRIEPNKV--------------SLVSVLPT------CSSLIGLSGGKQIHG 281
            LF EM  ++ +    +               L  V+P        + L+G      +  
Sbjct: 195 ALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVED 254

Query: 282 FA--IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
            A        H V+ CNA++  + + G +D A+ VFE     +D  TWS+++  Y  +  
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMC-ERDDGTWSAMIKAYEQNEF 313

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+  + +M+  G +P+  +++ +L+ C    +++ G E++ +++          + A
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSA 373

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            ++ M  + G LD+A     T   EP   + W ++++    HG  E Q L     ++L  
Sbjct: 374 -LITMYIKCGNLDKAKRVFHTF--EPKDIVMWNSMITGYAQHGLGE-QALGIFHDMRLAG 429

Query: 459 ENPSNYVSLSNLYASS 474
            +P     +  L A S
Sbjct: 430 MSPDGITYIGALTACS 445



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 125/279 (44%), Gaps = 46/279 (16%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+ ++   + G        F+ MP R   S+N  ++G+  +    L   +  +F +M  R
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRN---RLPDAALGLFRRMPSR 77

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG---G 276
           ++ ++ A+I+G                + L+ +  P+  + ++ +P   S++  +    G
Sbjct: 78  DLASYNALISG----------------LSLRRQTLPDAAAALASIPFPPSVVSFTSLLRG 121

Query: 277 KQIHGF---AIR-----KELNH--DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
              HG    AIR      E NH     L   L+D     G ++ ARR+F++   ++D + 
Sbjct: 122 YVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLD----AGRVNEARRLFDEMP-DRDVVA 176

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++SGY   G+  EA  L+++M     K ++++   ++S   ++G +N   +++  + 
Sbjct: 177 WTAMLSGYCQAGRITEARALFDEM----PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP 232

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
               +  T  +   +     +AG ++ A +    MP  P
Sbjct: 233 ERNEVSWTAMLVGYI-----QAGHVEDAAELFNAMPEHP 266



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           LS+ R         NY S  V   L V A    L   ++ H+ +L      + F  + LI
Sbjct: 318 LSTFREMLWRGVRPNYPS--VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALI 375

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
           T Y  CG   +++ VF++ + KD+ ++NS+I GY ++    +AL +F +M  + +SPD  
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI 435

Query: 123 TLA---TISKLSGEIKD 136
           T     T    +G++K+
Sbjct: 436 TYIGALTACSYTGKVKE 452


>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
 gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 158/500 (31%), Positives = 286/500 (57%), Gaps = 15/500 (3%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ---SQLVFNSIQHKDVYLYNSLINGY 96
           KQ  S +     + +P+ + K+I+ +A     +    ++ +F  +Q+K  +++N+++  +
Sbjct: 28  KQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTMMQAF 87

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           V+ +    A  L+ +M  SN  P++FT + + +   ++ +L +G+  HG  +K G+    
Sbjct: 88  VEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESYD 147

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            + N L+ +Y  CG      N+FD   +R+V +W   ISG+ +SG    V+ +R +FD+M
Sbjct: 148 FVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQ---VLIARELFDRM 204

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
             +N  +W A+I GYV+ G   EAL +F +MQ+      N+ S+V  L  C+ L  L  G
Sbjct: 205 PEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSG-FRLNRASIVGALTACAFLGALDQG 263

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           + IH +  R  ++ D  L  ALIDMY+KCG ++ A  VF++   ++D   ++ ++SG   
Sbjct: 264 RWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMD-DRDVYAFTCLISGLAN 322

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           H K   A+ L+N+M   G  P+ +T V VL+AC R G+++EGL I+ S+ N Y I+P  +
Sbjct: 323 HDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQ 382

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
              C+VD+LGRAG+++ A   ++ MP++P     GAL+ A  +HG+ ++ +    SL+Q 
Sbjct: 383 HYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQR 442

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
             ++   +V LSN+YAS+ +W+  +++R  M+D+ ++K PGCS I ++G    F   D++
Sbjct: 443 CLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKLPGCSSIEVNGTVCEFVTGDRS 502

Query: 517 HPCSVSIYEMLDDLILIMRG 536
                  Y + +D++ ++ G
Sbjct: 503 -------YALEEDIMFLLFG 515


>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
          Length = 751

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 186/553 (33%), Positives = 297/553 (53%), Gaps = 44/553 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  T+  FL  SA   +L+  KQ H+  +  G      + + LI  Y+  G    ++ VF
Sbjct: 199 TQVTLSSFLSASANLGALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVF 258

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  KDV  +N LI+GYV+    ++AL +   M   N+  D  TLAT+     ++++L 
Sbjct: 259 SRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLK 318

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF-------------------------- 172
           +G   H   I+     DV++ +S++ MY KC K                           
Sbjct: 319 LGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFA 378

Query: 173 -----SECLNLFDEMPQR----NVGSWNVRISGHASSGDFSLVVRSRRVFDQMK----RR 219
                 E LNLF +M       NV SWN  I G  +SG    V  ++ +F QM+    + 
Sbjct: 379 ELGHSGEALNLFYQMQLESVPPNVISWNSLILGFLNSGQ---VNEAKDMFLQMQSLGVQP 435

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           N+  WT +I+G  ++G   EA++ F  MQ +  ++PN VS++ VL  C +L  L  G+ +
Sbjct: 436 NLVTWTTLISGLARSGFGYEAILTFQRMQ-EAGVKPNVVSIIGVLLACINLASLQIGRAL 494

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           HG+ IR  L   + +  +L+DMY+KCG  D A+RVF D   +K+   +++++SG+ LHG+
Sbjct: 495 HGYLIRHSLYLSIPIATSLVDMYAKCGDRDQAKRVF-DMIPDKELPIYNAMISGFALHGQ 553

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+ LY  +   G KPD IT    L AC  + +++EGLE++  +++ + I P+ E   
Sbjct: 554 AVEALALYRCLKEEGLKPDNITFTNALYACSHAMMVSEGLELFVDMVSNHNINPSIEHYG 613

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+V +L R G LD A   I  MP +P   I G+L++A   H   E+++     L++L+P+
Sbjct: 614 CMVSLLSRCGDLDEAFGLISAMPYKPDVQILGSLLAACREHNKIELEEYLSNQLLKLQPD 673

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           N  NYV++SN YA++ RWD V ++R +MK+RGL+K PGCSWI +  + + F   DK+HP 
Sbjct: 674 NSGNYVAMSNAYAAAGRWDEVKKVRQLMKERGLRKIPGCSWIQVGEELNVFVAGDKSHPE 733

Query: 520 SVSIYEMLDDLIL 532
           +  IY  L  L++
Sbjct: 734 TEEIYTTLALLLM 746



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 141/576 (24%), Positives = 248/576 (43%), Gaps = 132/576 (22%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHI--SNPFVSTKLITAYALCGQPTQSQLVFNSIQ 82
             LQ     R+L   +Q H+QI+  G I   N ++ TKL+  YA C  P  S  +F  ++
Sbjct: 15  ELLQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFRRVR 74

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
            K+V+ + ++I    +   + EAL  F  M  + + PD+F L  + K  G ++ + +G +
Sbjct: 75  LKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVLKACGGLEWIRIGKV 134

Query: 143 IHGLSIKIGFVV------------------DVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           +HGL +  G+V                   + +  NS++  YV+ G   E + +F EM +
Sbjct: 135 VHGL-VSCGYVWKMWGGGGCKKGVCGMPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMRE 193

Query: 185 RNVGSWNVRIS-----------------GHASS-------------------GDFSLVVR 208
             V    V +S                 GHA +                       L+  
Sbjct: 194 EGVEPTQVTLSSFLSASANLGALQDGKQGHAIAVICGIEMTTNLGSSLINFYSKVGLIED 253

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           +  VF +M  ++V  W  +I+GYVQ G++D+AL +   M+L++ +  + V+L +++   +
Sbjct: 254 AESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLEN-LRFDSVTLATLMSAFA 312

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD----- 323
            +  L  GK+ H + IR  L  DV + ++++DMY+KC  + CARRVF +SS  KD     
Sbjct: 313 DMRNLKLGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIGCARRVF-NSSITKDLILWN 371

Query: 324 ------------------------------AITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
                                          I+W+S++ G+   G+ +EA  ++ +M  L
Sbjct: 372 TMLAAFAELGHSGEALNLFYQMQLESVPPNVISWNSLILGFLNSGQVNEAKDMFLQMQSL 431

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT-----EICACV------- 401
           G +P+++T   ++S   RSG   E +  +   +    +KP        + AC+       
Sbjct: 432 GVQPNLVTWTTLISGLARSGFGYEAILTFQR-MQEAGVKPNVVSIIGVLLACINLASLQI 490

Query: 402 -----------------------VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
                                  VDM  + G  D+A      +P +  P I+ A++S   
Sbjct: 491 GRALHGYLIRHSLYLSIPIATSLVDMYAKCGDRDQAKRVFDMIPDKELP-IYNAMISGFA 549

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           +HG + ++ LA    ++ E   P N    + LYA S
Sbjct: 550 LHGQA-VEALALYRCLKEEGLKPDNITFTNALYACS 584


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 167/476 (35%), Positives = 274/476 (57%), Gaps = 12/476 (2%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           + T +I  YA CG    ++ +F+ ++ K+V  ++++I  Y  +    +AL+LF  M  S 
Sbjct: 296 LGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSG 355

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           + PD  TLA++       ++L     +H  +   G + ++I+AN L+  Y       +  
Sbjct: 356 MLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAY 415

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN-- 234
            LFD M  R+  SW+V + G A  GD+   +     F ++ R       A  + Y     
Sbjct: 416 GLFDGMCVRDSVSWSVMVGGFAKVGDY---MNCFGTFRELIRCG-----ARPDNYTLPFC 467

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G+ +E+LVLF +M+ ++ + P+KV++V+V+  C+ L  +   + I  +  RK+   DV L
Sbjct: 468 GNANESLVLFDKMR-EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVIL 526

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
             A+IDM++KCG ++ AR +F D    K+ I+WS++++ YG HG+G +A+ L+  M+  G
Sbjct: 527 GTAMIDMHAKCGCVESAREIF-DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSG 585

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
             P+ IT+V +L AC  +GL+ EGL  ++ +   Y ++   +   CVVD+LGRAG+LD A
Sbjct: 586 ILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEA 645

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           L  I++M VE    +WGA + A   H +  + + A  SL++L+P+NP +Y+ LSN+YA++
Sbjct: 646 LKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANA 705

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            RW+ VA+ R +M  R LKK PG +WI +  K+H FSV D  HP S  IYEML  L
Sbjct: 706 GRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSL 761



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 169/354 (47%), Gaps = 66/354 (18%)

Query: 25  HFLQ-------VSA--THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ 75
           HFLQ       +SA    R+L   +Q H+Q    G + N  V+ KLI  Y+       + 
Sbjct: 74  HFLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAY 133

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
            +F+ +  +D   ++ ++ G+ K   +      F  +      PD++TL  + +   ++K
Sbjct: 134 GLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLK 193

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           +L +                     +L+ MYVKC +  +   LFD+M +R++ +W V I 
Sbjct: 194 NLQM---------------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIG 232

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
           G                                  Y + G  +E+LVLF +M+ ++ + P
Sbjct: 233 G----------------------------------YAECGKANESLVLFEKMR-EEGVVP 257

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           +KV++V+V+  C+ L  +   + I  +  RK+   DV L  A+IDMY+KCG ++ AR +F
Sbjct: 258 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 317

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            D    K+ I+WS++++ YG HG+G +A+ L+  M+  G  PD IT+  +L AC
Sbjct: 318 -DRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 178/410 (43%), Gaps = 66/410 (16%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L+  Y  C +   ++ +F+ +Q +D+  +  +I GY +    NE+L LF  M    V PD
Sbjct: 199 LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPD 258

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
              + T+     ++  ++   +I     +  F +DVIL  +++ MY KCG       +FD
Sbjct: 259 KVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFD 318

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            M ++NV SW                                  +AMI  Y  +G   +A
Sbjct: 319 RMEEKNVISW----------------------------------SAMIAAYGYHGQGRKA 344

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF  M L   + P+K++L S+L  C +   L+  +Q+H  A    +  ++ + N L+ 
Sbjct: 345 LDLF-RMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVH 403

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG------------------------- 335
            YS   +LD A  +F D    +D+++WS +V G+                          
Sbjct: 404 FYSYYRALDDAYGLF-DGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNY 462

Query: 336 ---LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
                G  +E+++L++KM   G  PD + +V V+ AC + G +++   I +  I   + +
Sbjct: 463 TLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTI-DDYIQRKKFQ 521

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
               +   ++DM  + G ++ A +    M  E +   W A+++A   HG 
Sbjct: 522 LDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 570



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 25/231 (10%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +FD M  R+  +W+ M+ G+ + GD       F E+ ++    P+  +L  V+  C  L 
Sbjct: 135 LFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFREL-IRCGARPDNYTLPFVIRACRDLK 193

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            L                       AL+DMY KC  ++ AR +F D    +D +TW+ ++
Sbjct: 194 NLQ---------------------MALVDMYVKCREIEDARFLF-DKMQERDLVTWTVMI 231

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            GY   GK +E+++L+ KM   G  PD + +V V+ AC + G +++   I +  I   + 
Sbjct: 232 GGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RIIDDYIQRKKF 290

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           +    +   ++DM  + G ++ A +    M  E +   W A+++A   HG 
Sbjct: 291 QLDVILGTAMIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ 340



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 142/361 (39%), Gaps = 76/361 (21%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L      R+L   +Q H+Q    G + N  V+ KL+  Y+       +  +F+ +
Sbjct: 362 TLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGM 421

Query: 82  QHKDVYLYNSLINGYVKNHGH----------------------------NEALELFSNMY 113
             +D   ++ ++ G+ K   +                            NE+L LF  M 
Sbjct: 422 CVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMR 481

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
              V PD   + T+     ++  ++    I     +  F +DVIL  +++ M+ KCG   
Sbjct: 482 EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVE 541

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
               +FD M ++NV SW                                  +AMI  Y  
Sbjct: 542 SAREIFDRMEEKNVISW----------------------------------SAMIAAYGY 567

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKEL 288
           +G   +AL LF  M L+  I PNK++LVS+L  CS    +  G +        +++R ++
Sbjct: 568 HGQGRKALDLF-PMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADV 626

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
            H       ++D+  + G LD A ++ E  +  KD   W + +       + H+ V+L  
Sbjct: 627 KH----YTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGA----CRTHKDVVLAE 678

Query: 349 K 349
           K
Sbjct: 679 K 679


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 174/532 (32%), Positives = 289/532 (54%), Gaps = 38/532 (7%)

Query: 14  TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVST-KLITAYALCGQP 71
           T  N  S T    L V A+   +    Q H  ++S G  + +P  +T  LI  Y  C   
Sbjct: 242 TETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDV 301

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             ++ +F+     D+ +  ++I+GYV N  +N ALE+F  +    +  +  TLA++    
Sbjct: 302 EMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPAC 361

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
             +  L +G  +HG  +K G      + +++M MY KCG+    L+L             
Sbjct: 362 AGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGR----LDL------------- 404

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                            + + F  +  ++   W +MI    QNG  +EA+ LF +M +  
Sbjct: 405 -----------------AHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAG 447

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
             + + VS+ + L  C++L  L  GK+IH F +R     D+   +ALIDMYSKCG+LD A
Sbjct: 448 -TKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLA 506

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
            RVF D+   K+ ++W+SI++ YG HG+  +++ L++ M+  G +PD +T + ++SACG 
Sbjct: 507 CRVF-DTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGH 565

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
           +G ++EG+  +  +     I    E  AC+VD+ GRAG+L+ A   I +MP  P   +WG
Sbjct: 566 AGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWG 625

Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
            L+ A  +HGN E+ ++A ++L  L+P+N   YV LSN++A++ +W++V ++R++MK+RG
Sbjct: 626 TLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERG 685

Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           ++K PGCSWI ++  TH F  AD++HP S  IY +L +L L +R     P L
Sbjct: 686 VQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIYLLLKNLFLELRKEGYVPQL 737



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/423 (29%), Positives = 210/423 (49%), Gaps = 42/423 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  + ++      S+ L +  H +I  +G   + FV + LI  Y+  G    ++ +F+ +
Sbjct: 149 TFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRM 208

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD  L+N ++NGYVKN   + A  +F  M  +  +P+  T A +  +      +N G 
Sbjct: 209 PSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGS 268

Query: 142 LIHGLSIKIGFVVDVILANS--LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
            +HGL +  G  +D  +AN+  L+ +Y KC                              
Sbjct: 269 QLHGLVVSSGLEMDSPVANTFALIDIYFKCRD---------------------------- 300

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                 V  +R++FDQ    ++   TAMI+GYV NG  + AL +F  + L++R+  N V+
Sbjct: 301 ------VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWL-LQERMRANSVT 353

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           L SVLP C+ L  L+ GK++HG  ++        + +A++DMY+KCG LD A + F   S
Sbjct: 354 LASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS 413

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            +KDA+ W+S+++    +GK  EA+ L+ +M   G+K D ++I   LSAC     ++ G 
Sbjct: 414 -DKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGK 472

Query: 380 EIYNSVI-NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           EI+  ++   +R     E  + ++DM  + G LD A     TM  E +   W ++++A  
Sbjct: 473 EIHAFMMRGAFRSDLFAE--SALIDMYSKCGNLDLACRVFDTME-EKNEVSWNSIIAAYG 529

Query: 439 MHG 441
            HG
Sbjct: 530 NHG 532



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 197/421 (46%), Gaps = 42/421 (9%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           LQ       L   +Q+H+Q+L  G   N  + TKL+  Y LCG    ++ +F  ++    
Sbjct: 53  LQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCS 112

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N +I G+      + AL  +  M      PD +T   + K  G +  + +G ++H  
Sbjct: 113 EPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDK 172

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
              +GF +DV + +SL+  Y + G    C++                             
Sbjct: 173 IQFMGFELDVFVGSSLIKFYSENG----CIH----------------------------- 199

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             +R +FD+M  ++   W  M+NGYV+NGD D A  +F+EM+ +    PN V+   VL  
Sbjct: 200 -DARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMR-RTETNPNSVTFACVLSV 257

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCN--ALIDMYSKCGSLDCARRVFEDSSFNKDA 324
           C+S I ++ G Q+HG  +   L  D  + N  ALID+Y KC  ++ AR++F D     D 
Sbjct: 258 CASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIF-DQRTPVDI 316

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           +  ++++SGY L+G  + A+ ++  ++    + + +T+  VL AC     +  G E++  
Sbjct: 317 VVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGH 376

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALD-FIKTMPVEPSPSIWGALVSASVMHGNS 443
           ++       +  + + ++DM  + G+LD A   FI     +     W +++++   +G  
Sbjct: 377 ILKNGH-GGSCYVGSAIMDMYAKCGRLDLAHQTFIGI--SDKDAVCWNSMITSCSQNGKP 433

Query: 444 E 444
           E
Sbjct: 434 E 434



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
           D + P    LVS+L TC+   GLS G+Q H   +   + ++  L   L+ MY  CG+   
Sbjct: 43  DSLAPQ---LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLD 99

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           A+ +F           W+ ++ G+ + G+   A+L Y KM+  G+ PD  T   V+ ACG
Sbjct: 100 AKNIFYQLRLWCSE-PWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACG 158


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 180/574 (31%), Positives = 294/574 (51%), Gaps = 71/574 (12%)

Query: 3   LSSARNTFALVTSRNYTSATV-QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
           +  A +TF   TS  ++  ++  H LQ      SL   KQ HS I++ G   + F+S  L
Sbjct: 47  IKQAYDTF---TSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHL 103

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK----------------------- 98
           +  Y+  GQ   S ++F+++  ++V  +N LINGY++                       
Sbjct: 104 LNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWN 163

Query: 99  --------NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
                      + +AL LF  MY     PD+FTL ++ +    ++ L  G  +H   +K 
Sbjct: 164 AMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKC 223

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           GF +  ++ +SL  MY+K G  S+   L   MP R V                       
Sbjct: 224 GFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTV----------------------- 260

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
                       AW  +I G  QNG  +E L  +  M++     P+K++ VSVL  CS L
Sbjct: 261 -----------VAWNTLIAGKAQNGCPEEVLNQYNMMKMAG-FRPDKITFVSVLSACSEL 308

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G+QIH   I+   +  +++ ++LI MYS+ G L+ + + F D   N D + WSS+
Sbjct: 309 ATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRE-NFDVVLWSSM 367

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           ++ YG HG+G EA+ L+++M  L  + + +T + +L AC  SGL  +G E ++ ++  Y+
Sbjct: 368 IAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYK 427

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           +KP  E   CVVD+LGRAG+L+ A   I++MPV+P   IW  L++A  +H  +EM +   
Sbjct: 428 LKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERIS 487

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + +I+L+P + ++YV LSN++AS+R W  V+++R  M+DR ++K PG SW+ +    H F
Sbjct: 488 EEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQF 547

Query: 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
           S+ DK+HP    I   L +L+  ++     P LG
Sbjct: 548 SMGDKSHPQYFEIDLYLKELMSELKQHGYVPELG 581


>gi|357118743|ref|XP_003561109.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Brachypodium distachyon]
          Length = 535

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/412 (38%), Positives = 241/412 (58%), Gaps = 23/412 (5%)

Query: 144 HGLSIKIGFVV--DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           H L +K G     D  L ++L+S Y K     E   +FDEMP+R+   +N  +S +A  G
Sbjct: 110 HALLVKSGHFASGDPFLGSALVSFYAKSRLLDEARRVFDEMPRRDTAVYNALLSAYARCG 169

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
              LV  + ++F +M  RNV +WTAM++GY QNG  + A+  FLEM     ++PN++++ 
Sbjct: 170 ---LVDAAEKLFGEMTERNVVSWTAMVSGYAQNGRHEAAVETFLEMWEGAGVQPNELTVS 226

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVLP C+++  +  G ++  +A  K    +V + NAL++MY+KCGS+  A +VF+     
Sbjct: 227 SVLPACAAVGAMELGTKVEEYARGKGHLGNVFVTNALLEMYAKCGSIQRAWQVFQGIGHR 286

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVC------------------LGSKPDIITIV 363
           +D  +W++++  + +HG   EA+ L++K+                     G KPD IT V
Sbjct: 287 RDLCSWNTMIMAFAVHGLWMEALALFHKLRVRISCSNSLVYFFSIPTHMTGVKPDGITFV 346

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
           GV+ AC   GL++EG  I+NS+   + I P  E   C+VD+LGRAG L  A   I +MP 
Sbjct: 347 GVILACTHGGLVDEGKLIFNSMEADFSINPRIEHYGCMVDLLGRAGLLKEAYSMIISMPA 406

Query: 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483
           EP   IWGAL+ A   HGN E+ + A   L+ LEP+N +N V LSN+YASS +WD VA++
Sbjct: 407 EPDAVIWGALLGACSFHGNIELAETAVDKLMYLEPQNTANLVILSNIYASSGKWDGVAQV 466

Query: 484 RTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
             ++K++  KKS G S+I + G+ H F V D +HP    IY+ LD + +IM+
Sbjct: 467 WKLLKEKDHKKSAGYSFIELDGRMHKFLVEDMSHPIFEEIYKTLDSVTMIMK 518



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 128/290 (44%), Gaps = 30/290 (10%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY-S 115
           V   L++AYA CG    ++ +F  +  ++V  + ++++GY +N  H  A+E F  M+  +
Sbjct: 157 VYNALLSAYARCGLVDAAEKLFGEMTERNVVSWTAMVSGYAQNGRHEAAVETFLEMWEGA 216

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
            V P++ T++++      +  + +G  +   +   G + +V + N+L+ MY KCG     
Sbjct: 217 GVQPNELTVSSVLPACAAVGAMELGTKVEEYARGKGHLGNVFVTNALLEMYAKCGSIQRA 276

Query: 176 LNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
             +F  +  +R++ SWN  I   A  G   L + +  +F +++ R               
Sbjct: 277 WQVFQGIGHRRDLCSWNTMIMAFAVHG---LWMEALALFHKLRVRI-------------- 319

Query: 235 GDLDEALVLFLEMQLK-DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKEL 288
                +LV F  +      ++P+ ++ V V+  C+    +  GK I       F+I   +
Sbjct: 320 -SCSNSLVYFFSIPTHMTGVKPDGITFVGVILACTHGGLVDEGKLIFNSMEADFSINPRI 378

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
            H       ++D+  + G L  A  +        DA+ W +++     HG
Sbjct: 379 EH----YGCMVDLLGRAGLLKEAYSMIISMPAEPDAVIWGALLGACSFHG 424



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 51/264 (19%), Positives = 103/264 (39%), Gaps = 23/264 (8%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L   A   +++L  +        GH+ N FV+  L+  YA CG   ++  VF  I
Sbjct: 224 TVSSVLPACAAVGAMELGTKVEEYARGKGHLGNVFVTNALLEMYAKCGSIQRAWQVFQGI 283

Query: 82  QH-KDVYLYNSLINGYVKNHGHNEALELFSNM------------------YYSNVSPDDF 122
            H +D+  +N++I  +  +    EAL LF  +                  + + V PD  
Sbjct: 284 GHRRDLCSWNTMIMAFAVHGLWMEALALFHKLRVRISCSNSLVYFFSIPTHMTGVKPDGI 343

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFD 180
           T   +         ++ G LI   S++  F ++  + +   ++ +  + G   E  ++  
Sbjct: 344 TFVGVILACTHGGLVDEGKLIFN-SMEADFSINPRIEHYGCMVDLLGRAGLLKEAYSMII 402

Query: 181 EMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
            MP + +   W   +   +  G+  L   +      ++ +N      + N Y  +G  D 
Sbjct: 403 SMPAEPDAVIWGALLGACSFHGNIELAETAVDKLMYLEPQNTANLVILSNIYASSGKWDG 462

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSV 263
              ++  ++ KD  +    S + +
Sbjct: 463 VAQVWKLLKEKDHKKSAGYSFIEL 486


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/527 (32%), Positives = 277/527 (52%), Gaps = 56/527 (10%)

Query: 36  LKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNSL 92
           L L ++ H+ +L    ++ N FV++ L+  YA   +   ++ VF+ +    + + ++N++
Sbjct: 298 LALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAM 357

Query: 93  INGYVKNHGHNEALELFSNM-YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I GY +     EALELFS M   +  +P + T++ +       +       +HG  +K G
Sbjct: 358 ICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRG 417

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              +  + N+LM MY + G+      +F  +  R+V SWN                    
Sbjct: 418 MAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNT------------------- 458

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL---------------KDRIEPN 256
                          +I G V  G   EA  L  EMQL                 R  PN
Sbjct: 459 ---------------LITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPN 503

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            ++L+++LP C++L   + GK+IHG+A+R  L  D+++ +AL+DMY+KCG L  +R VF 
Sbjct: 504 NITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVF- 562

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLSACGRSGLI 375
           D    ++ ITW+ ++  YG+HG G EAV L+++M   G + P+ +T +  L+AC  SGL+
Sbjct: 563 DRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLV 622

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALV 434
           + GLE+++ +   + +KPT ++ ACVVD+LGRAG+LD A   I +M P E   S W +L+
Sbjct: 623 DRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLL 682

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
            A  +H N E+ ++A + L +LEP   S+YV L N+Y+++  WD    +R  M+ +G+ K
Sbjct: 683 GACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAK 742

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            PGCSWI + G  H F   + +HP S  ++  +D L   MR    +P
Sbjct: 743 EPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAP 789



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 182/412 (44%), Gaps = 51/412 (12%)

Query: 48  SLGHISNPFVSTKLITAYALCG--QPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA 105
           +L H  +P V   L+TAYA CG      +     + + +D   YNSLI+          A
Sbjct: 93  ALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERA 152

Query: 106 LELFSNMYYS---NVSPDDFTLATI----SKLSGEIKDLNVGMLIHGLSIKIGFV---VD 155
           L+   +M      +VS   FTL ++    S L G+     +G   H  ++K GF+    +
Sbjct: 153 LDALRDMLAEGRHDVS--SFTLVSVLLACSHLPGD-DGRRLGREAHAFALKRGFLDEGRE 209

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
               N+L+SMY + G   +  +LF             R +  A S               
Sbjct: 210 RFPFNALLSMYARLGLVDDAQSLF-------------RTTAAAFSPGGG----------- 245

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
               +V  W  MI+  VQ G   EA+ +  +M +   + P+ V+  S LP CS L  L+ 
Sbjct: 246 ----DVVTWNTMISLLVQGGRCAEAVEVLYDM-VSLGVRPDGVTFASALPACSRLEMLAL 300

Query: 276 GKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDCARRVFE-DSSFNKDAITWSSIVSG 333
           G+++H   ++  +L  +  + +AL+DMY+    +  ARRVF+     ++    W++++ G
Sbjct: 301 GREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICG 360

Query: 334 YGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           Y   G   EA+ L+++M    G  P   T+ GVL AC RS     G E  +  +    + 
Sbjct: 361 YAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGF-AGKEAMHGYVVKRGMA 419

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNS 443
               +   ++DM  R G++D A        ++P   + W  L++  V+ G++
Sbjct: 420 GNRFVQNALMDMYARLGEMDVARRIFAM--IDPRDVVSWNTLITGCVVQGHA 469



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 134/337 (39%), Gaps = 52/337 (15%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           +  T+   L   A        +  H  ++  G   N FV   L+  YA  G+   ++ +F
Sbjct: 386 SETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIF 445

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS----------------PDDF 122
             I  +DV  +N+LI G V      EA +L + M   + S                P++ 
Sbjct: 446 AMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNI 505

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           TL T+      +     G  IHG +++     D+ + ++L+ MY KCG  +    +FD +
Sbjct: 506 TLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRL 565

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P+RNV +WNV                                  +I  Y  +G  DEA+ 
Sbjct: 566 PRRNVITWNV----------------------------------LIMAYGMHGLGDEAVA 591

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCS-SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
           LF EM       PN+V+ ++ L  CS S +   G +  HG      +     L   ++D+
Sbjct: 592 LFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDV 651

Query: 302 YSKCGSLDCARRVFEDSSFNKDAIT-WSSIVSGYGLH 337
             + G LD A  +       +  ++ WSS++    LH
Sbjct: 652 LGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLH 688



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 131/281 (46%), Gaps = 15/281 (5%)

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG--- 275
           R+  ++ ++I+        + AL    +M  + R + +  +LVSVL  CS L G  G   
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 276 GKQIHGFAIRK---ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF-----NKDAITW 327
           G++ H FA+++   +   +    NAL+ MY++ G +D A+ +F  ++        D +TW
Sbjct: 191 GREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTW 250

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           ++++S     G+  EAV +   MV LG +PD +T    L AC R  ++  G E++  V+ 
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK 310

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI--WGALVSASVMHGNSEM 445
              +   + + + +VDM     ++  A      +P EPS  +  W A++      G  E 
Sbjct: 311 DADLAANSFVASALVDMYAGNEKVASARRVFDMVP-EPSRQLGMWNAMICGYAQAGMDE- 368

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486
           + L   S ++ E     +  ++S +  +  R +  A    M
Sbjct: 369 EALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAM 409


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 184/585 (31%), Positives = 299/585 (51%), Gaps = 75/585 (12%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT+  FL VSAT   L    Q H+  +  G  S   V+  L++ YA C        +F  
Sbjct: 248 ATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGL 307

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +   D+  +N +I+G V+N   ++AL LF +M  S + PD  TL ++     ++   N G
Sbjct: 308 MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQG 367

Query: 141 MLIHGLSIK---------------IGF----------------VVDVILANSLMSMYVKC 169
             +HG  ++               I F                 +DV++ ++++S YV  
Sbjct: 368 KELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLN 427

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISG--------------------------------- 196
           G   E + +F  + ++ +    V I+                                  
Sbjct: 428 GMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVE 487

Query: 197 ------HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
                 +A  G   L   S  +F ++  ++   W +MI+ + QNG+ +EAL LF EM ++
Sbjct: 488 SALMDMYAKCGRLDL---SHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCME 544

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             ++ + V++ SVL  C+SL  +  GK+IHG  I+  +  D+   +ALIDMY KCG+L+ 
Sbjct: 545 G-VKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEW 603

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           A RVFE S   K+ ++W+SI++ YG +G   E+V L   M   G K D +T + ++SAC 
Sbjct: 604 AHRVFE-SMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACA 662

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
            +G + EGL ++  +   Y+I P  E  AC+VD+  RAG+LD+A++ I  MP +P   IW
Sbjct: 663 HAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIW 722

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
           GAL+ A  +H N E+ ++A + L +L+P N   YV +SN+ A + RWD V+++R +MKD 
Sbjct: 723 GALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDT 782

Query: 491 GLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
            ++K PG SW+ ++  +H F  ADK+HP S  IY  L  ++L +R
Sbjct: 783 KVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELR 827



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 132/426 (30%), Positives = 222/426 (52%), Gaps = 40/426 (9%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T  + ++  A   ++ L +  H    +LG   + FV + LI  YA  G    ++ VF+
Sbjct: 146 SHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFD 205

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            +  +D  L+N +++GYVK    + A+ELF +M  S   P+  TLA    +S    DL  
Sbjct: 206 GMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFF 265

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G+ +H L++K G   +V +AN+L+SMY KC    +   LF  MP+ ++ +WN        
Sbjct: 266 GVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWN-------- 317

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                      MI+G VQNG +D+AL+LF +MQ K  I P+ V+
Sbjct: 318 --------------------------GMISGCVQNGFVDQALLLFCDMQ-KSGIRPDSVT 350

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           LVS+LP  + L G + GK++HG+ +R  ++ DV L +AL+D+Y KC ++  A+ V+ DSS
Sbjct: 351 LVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVY-DSS 409

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
              D +  S+++SGY L+G   EAV ++  ++  G +P+ + I  VL AC     +  G 
Sbjct: 410 KAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQ 469

Query: 380 EIYNSVI-NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           E+++  + N Y  +   E  + ++DM  + G+LD +  +I +         W +++S+  
Sbjct: 470 ELHSYALKNAYEGRCYVE--SALMDMYAKCGRLDLS-HYIFSKISAKDEVTWNSMISSFA 526

Query: 439 MHGNSE 444
            +G  E
Sbjct: 527 QNGEPE 532



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 166/365 (45%), Gaps = 44/365 (12%)

Query: 29  VSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           VS +H SL L  Q H + ++ G H ++  + T+L+  Y L  +   +  VF+S+      
Sbjct: 50  VSPSHLSLGL--QVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAA 107

Query: 88  L---YNSLINGYVKNHGHNEALELFSNMYY--SNVSPDDFTLATISKLSGEIKDLNVGML 142
               +N LI G      +  AL  +  M+   S   PD  T   + K    +  + +G L
Sbjct: 108 CALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRL 167

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H  +  +G   D+ + ++L+ MY   G                                
Sbjct: 168 VHRTARTLGLDGDMFVGSALIKMYANGG-------------------------------- 195

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
             L+  +R+VFD M  R+   W  M++GYV+ G +  A+ LF +M+     EPN  +L  
Sbjct: 196 --LLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASG-CEPNFATLAC 252

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
            L   ++   L  G Q+H  A++  L  +V++ N L+ MY+KC  LD   ++F       
Sbjct: 253 FLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMP-RD 311

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D +TW+ ++SG   +G   +A+LL+  M   G +PD +T+V +L A       N+G E++
Sbjct: 312 DLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELH 371

Query: 383 NSVIN 387
             ++ 
Sbjct: 372 GYIVR 376



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 139/322 (43%), Gaps = 42/322 (13%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           +  +   L   A+  ++KL ++ HS  L   +    +V + L+  YA CG+   S  +F+
Sbjct: 449 AVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFS 508

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I  KD   +NS+I+ + +N    EAL LF  M    V   + T++++      +  +  
Sbjct: 509 KISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYY 568

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IHG+ IK     D+   ++L+ MY KCG       +F+ MP++N  SWN  I   AS
Sbjct: 569 GKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSII---AS 625

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYA----WTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
            G + LV  S  +   M+     A    + A+++     G + E L LF  M  + +I P
Sbjct: 626 YGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAP 685

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
                                 ++  FA              ++D+YS+ G LD A  + 
Sbjct: 686 ----------------------RMEHFA-------------CMVDLYSRAGKLDKAMELI 710

Query: 316 EDSSFNKDAITWSSIVSGYGLH 337
            D  F  DA  W +++    +H
Sbjct: 711 VDMPFKPDAGIWGALLHACRVH 732



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 131/307 (42%), Gaps = 36/307 (11%)

Query: 137 LNVGMLIHGLSIKIGF-VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
           L++G+ +HG ++  G    D  L   L+ MYV   +F + + +F  +P+           
Sbjct: 55  LSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPR----------- 103

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE- 254
           G A+                        W  +I G    GD   AL+ +L+M        
Sbjct: 104 GAAACA--------------------LPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPL 143

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+  +   V+ +C++L  ++ G+ +H  A    L+ D+ + +ALI MY+  G L  AR+V
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQV 203

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F D    +D + W+ ++ GY   G    AV L+  M   G +P+  T+   LS       
Sbjct: 204 F-DGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESD 262

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           +  G++++   +  Y ++    +   +V M  +   LD        MP +   + W  ++
Sbjct: 263 LFFGVQLHTLAVK-YGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVT-WNGMI 320

Query: 435 SASVMHG 441
           S  V +G
Sbjct: 321 SGCVQNG 327



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 2/177 (1%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            Y++ T+   L   A+  ++   K+ H  ++     ++ F  + LI  Y  CG    +  
Sbjct: 547 KYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHR 606

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF S+  K+   +NS+I  Y       E++ L  +M       D  T   +         
Sbjct: 607 VFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQ 666

Query: 137 LNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWN 191
           +  G+ L   ++ +      +     ++ +Y + GK  + + L  +MP + + G W 
Sbjct: 667 VQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWG 723



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 11/190 (5%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNH-DVSLCNALIDMYSKCGSLDCARRVFEDS 318
           L++VL  C S   LS G Q+HG A+   L+  D +L   L+ MY        A  VF  S
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVF--S 99

Query: 319 SFNKD----AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK--PDIITIVGVLSACGRS 372
           S  +     A+ W+ ++ G  + G    A+L Y KM    S   PD  T   V+ +C   
Sbjct: 100 SLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAAL 159

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           G I  G  ++ +   T  +     + + ++ M    G L  A      M  E    +W  
Sbjct: 160 GAIALGRLVHRTA-RTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGM-AERDCVLWNV 217

Query: 433 LVSASVMHGN 442
           ++   V  G+
Sbjct: 218 MMDGYVKAGS 227


>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 257/473 (54%), Gaps = 35/473 (7%)

Query: 84  KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           ++V  + S+I GY +N     ALE +  M  S V PD FT  +I K    + D+ +G  +
Sbjct: 4   RNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQL 63

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG-D 202
           H   +K  F   +I  N+L+SMY K     + L++F  M  R++ SW   I+G +  G +
Sbjct: 64  HAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYE 123

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK------------ 250
              +   + +  Q  R ++ AW A+I G+   G+L +A+  F EM+              
Sbjct: 124 LEALCYFKEMLHQ-GRPDLVAWNAIIAGFAY-GELRDAIFFFEEMRCNADLVSWNAILTA 181

Query: 251 ----DRIE---------------PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
               D+ E               P+ ++L +VL   +  + +  G Q+H +A++  LN D
Sbjct: 182 CMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCD 241

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
            S+ N LID+Y+KCGSL  A ++F DS  N D ++WSS++ GY   G G EA+ L+  M 
Sbjct: 242 TSVTNGLIDLYAKCGSLKTAHKIF-DSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMR 300

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
            L  KP+ +T VGVL+AC   GL+ EG ++Y ++   + I PT E C+C+VD+L RAG L
Sbjct: 301 RLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCL 360

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
           + A  FI  M  +P   +W  L++A   HGN ++   A +++++++P N + +V L N+Y
Sbjct: 361 NEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIY 420

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           AS   W+ VA LR++MK RG++K PG SWI +  + H F V D  HP    IY
Sbjct: 421 ASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSLHPERNKIY 473



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 121/259 (46%), Gaps = 42/259 (16%)

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  RNV +WT++I GY QNG    AL  + +M L+  + P++ +  S++  CSSL  +  
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQM-LQSGVMPDQFTFGSIIKACSSLGDIGL 59

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+Q+H   ++ E    +   NALI MY+K   +  A  VF   +  +D I+W S+++G+ 
Sbjct: 60  GRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMA-TRDLISWGSMIAGFS 118

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
             G   EA+  + +M+  G +PD++                     +N++I  +      
Sbjct: 119 QLGYELEALCYFKEMLHQG-RPDLVA--------------------WNAIIAGFAY---- 153

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
                        G+L  A+ F + M        W A+++A + H  +E +      L+ 
Sbjct: 154 -------------GELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAE-EVFRLLKLMC 199

Query: 456 LEPENPSNYVSLSNLYASS 474
           +    P +Y++L+N+  +S
Sbjct: 200 ISQHRP-DYITLTNVLGAS 217



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 2/220 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L  SA   S+++  Q H   L  G   +  V+  LI  YA CG    +  +F+S+
Sbjct: 209 TLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSM 268

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            + DV  ++SLI GY +     EAL+LF  M   +V P+  T   +      +  +  G 
Sbjct: 269 INPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGW 328

Query: 142 LIHG-LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHAS 199
            ++G +  + G        + ++ +  + G  +E      +M    ++  W   ++   +
Sbjct: 329 KLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKT 388

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
            G+  +  R+     ++   N  A   + N Y   G+ ++
Sbjct: 389 HGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWED 428


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/515 (33%), Positives = 270/515 (52%), Gaps = 38/515 (7%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L L +Q H+ IL    I    +   +I  Y+ CG    S  VF+++  +DV  +N++++ 
Sbjct: 338 LDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSA 397

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           +V+N   +E L L   M       D  TL  +  L+  ++   +G   H   I+ G   +
Sbjct: 398 FVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE 457

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             +   L+ MY K G  +    LF++                                + 
Sbjct: 458 G-MDGYLIDMYAKSGLITTAQQLFEK--------------------------------NS 484

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
              R+   W AMI GY QNG  +E   +F +M ++  + PN V+L S+LP C+ +  +  
Sbjct: 485 XYDRDEATWNAMIAGYTQNGLSEEGFAVFRKM-IEQNVRPNAVTLASILPACNPMGTIGL 543

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GKQIHGFAIR  LN +V +  AL+DMYSK G++  A  VF ++   K+++T+++++  YG
Sbjct: 544 GKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAET-LEKNSVTYTTMILSYG 602

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            HG G  A+ L++ M+  G KPD +T V +LSAC  +GL++EGL I+ S+   Y+I+P++
Sbjct: 603 QHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSS 662

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLI 454
           E   CV DMLGR G++  A +F+K +  E +   IWG+L+ A  +HG  E+  +    L+
Sbjct: 663 EHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLL 722

Query: 455 QLEPEN--PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           ++E  +     +V LSN+YA+   WD V  +R  M+ +GL K  GCSW+ + G  +CF  
Sbjct: 723 EMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMS 782

Query: 513 ADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
            D  HP    IY+ML+ L + M+ A   P L   T
Sbjct: 783 RDHKHPQCAEIYQMLEKLAMEMKDAGYKPCLNLQT 817



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 202/473 (42%), Gaps = 85/473 (17%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           S  + S T    L+  A  RSLKL K  H  +L     S+  V   L+  Y+ C      
Sbjct: 99  SPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPY 158

Query: 75  -------------QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
                        + VF++++ ++V  +N++I+ YVK     EA ++F  M    + P  
Sbjct: 159 LGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTP 218

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIG--FVVDVILANSLMSMYVKCGKFSECLNLF 179
            +   +      + D +   +++GL +K+G  +V D  + +S + MY + G    C++  
Sbjct: 219 VSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELG----CVDF- 273

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
                                        +R +FD    RN   W  MI GYVQN    E
Sbjct: 274 -----------------------------AREIFDCCLERNTEVWNTMIGGYVQNNCPIE 304

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           A+ LF+++   ++   + V+ +S L   S L  L  G+Q+H + ++      V + NA+I
Sbjct: 305 AIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAII 364

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
            MYS+CGS+  + +VF +    +D +TW+++VS +  +G   E ++L  +M   G   D 
Sbjct: 365 VMYSRCGSIGTSFKVFSN-MLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDS 423

Query: 360 ITIVGVLSACG----------------RSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           +T+  +LS                   R G+  EG++ Y                  ++D
Sbjct: 424 VTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGY------------------LID 465

Query: 404 MLGRAGQLDRALD-FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           M  ++G +  A   F K    +   + W A+++    +G SE     ++ +I+
Sbjct: 466 MYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIE 518



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 179/382 (46%), Gaps = 33/382 (8%)

Query: 67  LC--GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP--DDF 122
           LC  G P Q+  +F+SI      L+N++I G++ N+   +AL  ++ M  S  SP  D +
Sbjct: 47  LCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASP-SPKFDSY 105

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T ++  K   + + L +G  +H   ++  F    I+ NSL++MY  C           E+
Sbjct: 106 TFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTC---------LTEV 156

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P               ++ DF+     RRVFD M++RNV AW  MI+ YV+   L EA  
Sbjct: 157 PYL------------GTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFK 204

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLCNALID 300
           +F  M ++  I P  VS V+V P    +        ++G  ++   +   D  + ++ I 
Sbjct: 205 MFRTM-MRMGIRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIF 263

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK-MVCLGSKPDI 359
           MY++ G +D AR +F D    ++   W++++ GY  +    EA+ L+ + M       D 
Sbjct: 264 MYAELGCVDFAREIF-DCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDD 322

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           +T +  L+A  +   ++ G +++  ++ +  I     + A +V M  R G +  +     
Sbjct: 323 VTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIV-MYSRCGSIGTSFKVFS 381

Query: 420 TMPVEPSPSIWGALVSASVMHG 441
            M +E     W  +VSA V +G
Sbjct: 382 NM-LERDVVTWNTMVSAFVQNG 402



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 118/243 (48%), Gaps = 10/243 (4%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF- 78
           S T+   L +++  RS ++ KQ+H+ ++  G I    +   LI  YA  G  T +Q +F 
Sbjct: 423 SVTLTALLSLASNLRSQEIGKQAHAYLIRHG-IQFEGMDGYLIDMYAKSGLITTAQQLFE 481

Query: 79  -NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
            NS   +D   +N++I GY +N    E   +F  M   NV P+  TLA+I      +  +
Sbjct: 482 KNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTI 541

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
            +G  IHG +I+     +V +  +L+ MY K G  +   N+F E  ++N  ++   I   
Sbjct: 542 GLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMI--- 598

Query: 198 ASSGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
            S G   +  R+  +F  M     + +   + A+++     G +DE L +F  M+ + +I
Sbjct: 599 LSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKI 658

Query: 254 EPN 256
           +P+
Sbjct: 659 QPS 661


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 171/490 (34%), Positives = 273/490 (55%), Gaps = 24/490 (4%)

Query: 45  QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
           Q+    H+S   +   L+ A    G+  +++ +F+ +  +DV  + ++++GY +     E
Sbjct: 137 QMPERNHVSYTVLLGGLLDA----GRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV---DVILANS 161
           A  LF  M   NV      ++  + +SG  ++  V      L+ K+  V+   + +   +
Sbjct: 193 ARALFDEMPKRNV------VSWTAMISGYAQNGEVN-----LARKLFEVMPERNEVSWTA 241

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           ++  Y++ G   +   LF+ MP+  V + N  + G    G   +V  ++ VF++M  R+ 
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG---MVDAAKTVFEKMCERDD 298

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
             W+AMI  Y QN  L EAL  F EM  +  + PN  S++S+L  C++L  L  G+++H 
Sbjct: 299 GTWSAMIKAYEQNEFLMEALSTFREMLWRG-VRPNYPSVISILTVCAALAVLDYGREVHA 357

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
             +R   + DV   +ALI MY KCG+LD A+RVF      KD + W+S+++GY  HG G 
Sbjct: 358 AMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFE-PKDIVMWNSMITGYAQHGLGE 416

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
           +A+ +++ M   G  PD IT +G L+AC  +G + EG EI+NS+     I+P  E  +C+
Sbjct: 417 QALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCM 476

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           VD+LGR+G ++ A D IK MPVEP   IWGAL+ A  MH N+E+ + A K L++LEP N 
Sbjct: 477 VDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNA 536

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK-AHPCS 520
             YV LS++Y S  RW+  +++R  +  R L KSPGCSWI    + H F+  D  AHP  
Sbjct: 537 GPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEH 596

Query: 521 VSIYEMLDDL 530
            +I  +L+ L
Sbjct: 597 AAILRILEKL 606



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 198/436 (45%), Gaps = 37/436 (8%)

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           I   A  G    ++  F ++  +    YN+L+ GY +N   + AL LF  M   +++  +
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYN 83

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
             ++ +S     + D    +        I F   V+   SL+  YV+ G  ++ + LF +
Sbjct: 84  ALISGLSLRRQTLPDAAAAL------ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQ 137

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           MP+RN  S+ V + G   +G    V  +RR+FD+M  R+V AWTAM++GY Q G + EA 
Sbjct: 138 MPERNHVSYTVLLGGLLDAGR---VNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 242 VLFLEMQLKDRIEPNKV--------------SLVSVLPT------CSSLIGLSGGKQIHG 281
            LF EM  ++ +    +               L  V+P        + L+G      +  
Sbjct: 195 ALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVED 254

Query: 282 FA--IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
            A        H V+ CNA++  + + G +D A+ VFE     +D  TWS+++  Y  +  
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMC-ERDDGTWSAMIKAYEQNEF 313

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+  + +M+  G +P+  +++ +L+ C    +++ G E++ +++          + A
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSA 373

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            ++ M  + G LD+A     T   EP   + W ++++    HG  E Q L     ++L  
Sbjct: 374 -LITMYIKCGNLDKAKRVFHTF--EPKDIVMWNSMITGYAQHGLGE-QALGIFHDMRLAG 429

Query: 459 ENPSNYVSLSNLYASS 474
            +P     +  L A S
Sbjct: 430 MSPDGITYIGALTACS 445



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 124/279 (44%), Gaps = 46/279 (16%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+ ++   + G        F+ MP R   S+N  ++G+  +    L   +  +F +M  R
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRN---RLPDAALGLFRRMPSR 77

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG---G 276
           ++ ++ A+I+G                + L+ +  P+  + ++ +P   S++  +    G
Sbjct: 78  DLASYNALISG----------------LSLRRQTLPDAAAALASIPFPPSVVSFTSLLRG 121

Query: 277 KQIHGF---AIR-----KELNH--DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
              HG    AIR      E NH     L   L+D     G ++ ARR+F D   ++D + 
Sbjct: 122 YVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLD----AGRVNEARRLF-DEMPDRDVVA 176

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++SGY   G+  EA  L+++M     K ++++   ++S   ++G +N   +++  + 
Sbjct: 177 WTAMLSGYCQAGRITEARALFDEM----PKRNVVSWTAMISGYAQNGEVNLARKLFEVMP 232

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
               +  T  +   +     +AG ++ A +    MP  P
Sbjct: 233 ERNEVSWTAMLVGYI-----QAGHVEDAAELFNAMPEHP 266



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI 62
           LS+ R         NY S  V   L V A    L   ++ H+ +L      + F  + LI
Sbjct: 318 LSTFREMLWRGVRPNYPS--VISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALI 375

Query: 63  TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
           T Y  CG   +++ VF++ + KD+ ++NS+I GY ++    +AL +F +M  + +SPD  
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI 435

Query: 123 TLA---TISKLSGEIKD 136
           T     T    +G++K+
Sbjct: 436 TYIGALTACSYTGKVKE 452


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/487 (34%), Positives = 264/487 (54%), Gaps = 47/487 (9%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K SH  ++S          T LIT YA  G    +  +F+ I  KDV  +N+ I+GY + 
Sbjct: 163 KSSHRDVVSY---------TALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAET 213

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
             + EALELF  M  +NV PD+ T+ T+     +   + +G  +H      GF  ++ + 
Sbjct: 214 GNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIV 273

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+L+ +Y KCG+      LF  +  ++V S                              
Sbjct: 274 NALIDLYSKCGELETACGLFQGLSNKDVIS------------------------------ 303

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
               W  +I GY       EAL+LF +M L+   +PN V+++S+L  C+ L  +  G+ I
Sbjct: 304 ----WNTLIGGYTHMNLYKEALLLFQDM-LRSGEKPNDVTMLSILSACAHLGAIDIGRWI 358

Query: 280 HGFAIR--KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           H +  +  K + +  SL  +LIDMY+KCG ++ A++VF DS  N+   +W++++ G+ +H
Sbjct: 359 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVF-DSMLNRSLSSWNAMIFGFAMH 417

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G+ + A  ++++M   G +PD IT VG+LSAC  SG+++ G  I+ S+   Y++ P  E 
Sbjct: 418 GRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEH 477

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
             C++D+ G +G    A   I TM +EP   IW +L+ A  MHGN E+ +   ++LI++E
Sbjct: 478 YGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIE 537

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           PENP +YV LSN+YA++ RW+ VA+ R ++ D+G+KK PGCS I I    H F + DK H
Sbjct: 538 PENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 597

Query: 518 PCSVSIY 524
           P +  IY
Sbjct: 598 PRNREIY 604



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 146/513 (28%), Positives = 267/513 (52%), Gaps = 30/513 (5%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC----GQP 71
           RN+ S ++ H  +   T +SL++    H+Q++  G  +  +  +KL+    L     G P
Sbjct: 1   RNHPSLSLLHXCK---TLQSLRII---HAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLP 54

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
                VF++IQ   + ++N++  G+  +     AL+L+  M    + P+ +T   + K  
Sbjct: 55  YAIS-VFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSC 113

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
            +      G  +HG  +K GF +D+ +  SL+SMYV+ G+  +   + D+   R+V S+ 
Sbjct: 114 AKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYT 173

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
             I+G+AS G    +  + ++FD++  ++V +W A I+GY + G+  EAL LF +M +K 
Sbjct: 174 ALITGYASRG---XIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKM-MKT 229

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            + P++ ++V+VL  C+    +  G+Q+H +        ++ + NALID+YSKCG L+ A
Sbjct: 230 NVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETA 289

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
             +F+  S NKD I+W++++ GY       EA+LL+  M+  G KP+ +T++ +LSAC  
Sbjct: 290 CGLFQGLS-NKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAH 348

Query: 372 SGLINEGLEIYNSVINTYRIKPTTE---ICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
            G I+ G  I+  V    R+K  T    +   ++DM  + G ++ A     +M +  S S
Sbjct: 349 LGAIDIGRWIH--VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLS 405

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQ--LEPENPSNYVSLSNLYASSRRWDAVAEL-RT 485
            W A++    MHG +      +  + +  +EP++ + +V L +  + S   D    + R+
Sbjct: 406 SWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDIT-FVGLLSACSHSGMLDLGRHIFRS 464

Query: 486 MMKDRGLK---KSPGCSWISIHGKTHCFSVADK 515
           M +D  L    +  GC  I + G +  F  A+K
Sbjct: 465 MTRDYKLMPKLEHYGCM-IDLXGHSGLFKEAEK 496


>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 491

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 161/475 (33%), Positives = 273/475 (57%), Gaps = 8/475 (1%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP---TQSQLVFNSIQHKDVYLYN 90
           R++   KQ  + +   G + +P+ + K+I+  AL       + +  +F  ++H+  +++N
Sbjct: 21  RTISQIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRSTFIWN 80

Query: 91  SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           ++I  + + +   +A+ LF NM YSN  P+++T + + K   ++ +L +G+  H  SIK+
Sbjct: 81  TVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSIKL 140

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G+     + N L+ M+   G       LFD    R+V +W   I+G+  +G    V+  R
Sbjct: 141 GWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQ---VLIGR 197

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
            +FD+M  RN  +W+AMI GYV+ G  +EAL LF  M L     PN   +V  +  C+SL
Sbjct: 198 ELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAM-LISGFWPNHAGIVCAINACASL 256

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             L  G+ IH +  R  ++ D  +  ALIDMY+KCG ++ A  +F +   N+D   ++ +
Sbjct: 257 GALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELR-NRDVHVYTCL 315

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           +SG   HG+   AV L+ +M   G  P+ +T V VL+AC R GL+++GL I+ ++   Y 
Sbjct: 316 ISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYG 375

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
            +P  +   C+VD+LGRAG+L+ A   +K MP++P   + GAL++AS ++G+ E+ +   
Sbjct: 376 DEPQVQHYGCLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVELGEETV 435

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
           +SL QL  ++   +V LSN+YAS+ +WD VA +R  M D+ ++K PGCS I + G
Sbjct: 436 ESLAQLSLDHSGVHVVLSNMYASANKWDEVARVRRGMGDKKVRKVPGCSLIKVDG 490


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/545 (30%), Positives = 289/545 (53%), Gaps = 48/545 (8%)

Query: 44  SQILSLGHISNPFVSTKLITAYALCGQPTQS-QLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           S+   +G         K++    + G+ ++S   +F+ +  +DV  +NS+I+GYV N   
Sbjct: 35  SEYAKIGDFKESICLFKIMVEKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLT 94

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
              L ++  M Y  +  D  T+ ++     +   L++G  +H L+IK  F   +  +N+L
Sbjct: 95  ERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTL 154

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG--DFSLVV------------- 207
           + MY KCG     L +F++M +RNV SW   I+G+   G  D ++++             
Sbjct: 155 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDV 214

Query: 208 -----------------RSRRVFDQMKRRN----VYAWTAMINGYVQNGDLDEALVLFLE 246
                              + V D +K  N    ++   A+++ Y + G ++ A  +F  
Sbjct: 215 VAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFST 274

Query: 247 MQLKD---------RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
           M +KD          ++P+  ++  +LP C+SL  L  GK+IHG+ +R   + D  + NA
Sbjct: 275 MVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANA 334

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           L+D+Y KCG L  AR +F D   +KD ++W+ +++GYG+HG G+EA+  +N+M   G +P
Sbjct: 335 LVDLYVKCGVLGLARLLF-DMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEP 393

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           D ++ + +L AC  SGL+ +G   +  + N + I+P  E  AC+VD+L R G L +A  F
Sbjct: 394 DEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKF 453

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
           I+T+P+ P  +IWGAL+    ++ + E+ +   + + +LEPEN   YV L+N+YA + +W
Sbjct: 454 IETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKW 513

Query: 478 DAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF-SVADKAHPCSVSIYEMLDDLILIMRG 536
           + V  +R  +  +GL+K+PGCSWI I G+ + F S  + +HP S  I  +L  +   M+ 
Sbjct: 514 EEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKE 573

Query: 537 AAASP 541
               P
Sbjct: 574 EGYFP 578



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 136/291 (46%), Gaps = 56/291 (19%)

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM------ 247
           +S +A+ GD       RRVFD M+++NVY W  M++ Y + GD  E++ LF  M      
Sbjct: 3   VSFYATCGDLK---EGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 59

Query: 248 ------------QLKDR--------------------------------IEPNKVSLVSV 263
                       +L DR                                I+ +  +++SV
Sbjct: 60  GKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISV 119

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           L  C+    LS GK +H  AI+      ++  N L+DMYSKCG LD A RVFE     ++
Sbjct: 120 LVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERN 178

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            ++W+S+++GY   G    A++L  +M   G K D++ I  +L AC RSG ++ G ++++
Sbjct: 179 VVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD 238

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
             I    +     +C  ++DM  + G ++ A     TM V+   S W  +V
Sbjct: 239 -YIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIIS-WNTMV 287



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 145/364 (39%), Gaps = 56/364 (15%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT+   L   A   +L L K  HS  +          S  L+  Y+ CG    +  VF  
Sbjct: 114 ATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEK 173

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +  ++V  + S+I GY ++   + A+ L   M    V  D   + +I         L+ G
Sbjct: 174 MGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNG 233

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG---- 196
             +H          ++ + N+LM MY KCG      ++F  M  +++ SWN  +      
Sbjct: 234 KDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPD 293

Query: 197 ------------------------------------HASSGDFSLVVR------SRRVFD 214
                                               H ++    L V+      +R +FD
Sbjct: 294 SRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFD 353

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            +  +++ +WT MI GY  +G  +EA+  F EM+    IEP++VS +S+L  CS    L 
Sbjct: 354 MIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMR-DAGIEPDEVSFISILYACSHSGLLE 412

Query: 275 GGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
            G +      + F I  +L H       ++D+ S+ G+L  A +  E      DA  W +
Sbjct: 413 QGWRFFYIMKNDFNIEPKLEHYA----CMVDLLSRTGNLSKAYKFIETLPIAPDATIWGA 468

Query: 330 IVSG 333
           ++ G
Sbjct: 469 LLCG 472



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A+  +L+  K+ H  IL  G+ S+  V+  L+  Y  CG    ++L+F+
Sbjct: 294 SRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFD 353

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
            I  KD+  +  +I GY  +   NEA+  F+ M  + + PD+ +  +I
Sbjct: 354 MIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISI 401


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/487 (32%), Positives = 270/487 (55%), Gaps = 39/487 (8%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V    YT ATV   +   +    L   +  H  ++  G +SN F+S  L+  Y  CG+  
Sbjct: 262 VPPSEYTIATV---ITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELD 318

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            ++ VF+ + + D+ L+ ++I GY +N    +AL LF +  ++N++P+  T AT+   S 
Sbjct: 319 HARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASA 378

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
           +++DL++G  IHGL++K+G V   ++ N+L+ MY KC   SE                  
Sbjct: 379 QLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSE------------------ 420

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                           + R+F ++  ++V AW +MI+GY +N   D+AL+LF +M L+  
Sbjct: 421 ----------------ADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGS 464

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
             P+ +S+V+ L     L  L  GK IHG+A++     ++ +  AL+++Y+KCG L  AR
Sbjct: 465 -SPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSAR 523

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
           RVF++ + +++++TW +++ GYG+ G    ++ L+ +M+  G  P+ I    +LS C  S
Sbjct: 524 RVFDEMN-DRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHS 582

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
           G++  G   ++S+   + I P+ +  AC+VD+L RAG L+ AL+FI  MP++   S+WGA
Sbjct: 583 GMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGA 642

Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
            +    +H   +  + A K ++ L PE P  YV +SNLY S+  WD    +R  M+++GL
Sbjct: 643 FLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLISNLYTSNGMWDKSLAIRRWMQEKGL 702

Query: 493 KKSPGCS 499
            K PGCS
Sbjct: 703 VKLPGCS 709



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 191/391 (48%), Gaps = 38/391 (9%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           ++ FV   L+  YA       ++ VF  I  ++V  + S+I+G V+N   ++ L LF+ M
Sbjct: 198 ADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKM 257

Query: 113 YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
              NV P ++T+AT+      +  L+ G  +HG  IK G + +  ++ +L+ MYVKCG+ 
Sbjct: 258 RQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGEL 317

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                +FDE+   ++  W                                  T MI GY 
Sbjct: 318 DHARCVFDELSYIDLVLW----------------------------------TTMIVGYT 343

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG+  +AL LFL+ +  + I PN V+  +VL   + L  LS GK IHG A++  L    
Sbjct: 344 QNGNPLDALRLFLDKRFAN-IAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYN 402

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            + NAL+DMY+KC ++  A R+F   S NKD + W+S++SGY  +  G +A++L+ +M  
Sbjct: 403 VVGNALVDMYAKCQAVSEADRIFGRIS-NKDVVAWNSMISGYAENNMGDDALMLFKQMSL 461

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            GS PD I++V  LSA    G +  G  I+   +  +       +   ++++  + G L 
Sbjct: 462 QGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVK-HAFVSNIYVDTALLNLYNKCGDLL 520

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            A      M    S + W A++    M G+S
Sbjct: 521 SARRVFDEMNDRNSVT-WCAMIGGYGMQGDS 550



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 163/338 (48%), Gaps = 43/338 (12%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R L     +H Q L LG +      TKL++ YA  G    +++VF+     D Y Y +++
Sbjct: 79  RVLHARLLTHPQGLLLGSLR---ARTKLLSCYAALGDLASARMVFDGTPRPDAYSYGAML 135

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSP---DDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
              V+   H +A+ L  +M      P   DDF L+   K      + + G  +H  +IK+
Sbjct: 136 WCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKV 195

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G   D  + NSL+ MY K         +F+ +P RNV SW                    
Sbjct: 196 GG-ADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSW-------------------- 234

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
                         T+MI+G VQNG   + L+LF +M+ +D + P++ ++ +V+  CS+L
Sbjct: 235 --------------TSMISGCVQNGFASDGLLLFNKMR-QDNVPPSEYTIATVITACSAL 279

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
            GL  G+ +HG  I++ L  +  +  AL+DMY KCG LD AR VF++ S+  D + W+++
Sbjct: 280 FGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSY-IDLVLWTTM 338

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
           + GY  +G   +A+ L+         P+ +T   VLSA
Sbjct: 339 IVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSA 376



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 136/275 (49%), Gaps = 17/275 (6%)

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEM---PQRNV-GSWNVR---ISGHASSGD 202
           +G +   + A  L+ +   CG       L   +   PQ  + GS   R   +S +A+ GD
Sbjct: 53  VGNLARALSAGDLLRLLPSCGTLLSLRVLHARLLTHPQGLLLGSLRARTKLLSCYAALGD 112

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP---NKVS 259
            +    +R VFD   R + Y++ AM+   VQ     +A+ L  +M+ + R  P   +   
Sbjct: 113 LA---SARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMR-RRRPCPEAQDDFV 168

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           L   L  C      S G+ +H  AI K    D  + N+L+DMY+K   L+CAR+VFE   
Sbjct: 169 LSLALKACIRSAEYSYGRSLHCDAI-KVGGADGFVMNSLVDMYAKAEDLECARKVFERIP 227

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            +++ ++W+S++SG   +G   + +LL+NKM      P   TI  V++AC     +++G 
Sbjct: 228 -DRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGR 286

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
            ++ SVI    +   + I A ++DM  + G+LD A
Sbjct: 287 WMHGSVIKQ-GLMSNSFISAALLDMYVKCGELDHA 320


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 177/523 (33%), Positives = 269/523 (51%), Gaps = 37/523 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L  +A   +  + +  H+     G   +  V T LI+ YA CG    ++ +F+
Sbjct: 221 STTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFD 280

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            ++  D+  YN+LI+GY  N     ++ELF  +    + P   TL  +  +        +
Sbjct: 281 RMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPL 340

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              +H   +K G   +  ++ +L ++Y +          F++M                 
Sbjct: 341 AGCLHAHVVKAGLDANAPVSTALTTLYCR----------FNDMDS--------------- 375

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    +RR FD M  + + +W AMI+GY QNG  + A+ LF +MQ  + + PN ++
Sbjct: 376 ---------ARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALN-VRPNPLT 425

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           + S L  C+ L  LS GK +H     ++L  +V +  ALIDMY KCGS+  AR +F DS 
Sbjct: 426 ISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIF-DSM 484

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            NK+ ++W+ ++SGYGLHG+G EA+ LY  M+     P   T + VL AC   GL+ EG 
Sbjct: 485 DNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGT 544

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP-SPSIWGALVSASV 438
            ++ S+ + Y I P  E C C+VD+LGRAGQL  A + I   P     P IWGAL+ A +
Sbjct: 545 TVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACM 604

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           +H + ++  LA + L +LEPEN   YV LSNLY S +++   A +R   K R L K+PGC
Sbjct: 605 VHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGC 664

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           + I I  + H F   D+AHP S +IY  L+ L   M  A   P
Sbjct: 665 TLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRP 707



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 208/459 (45%), Gaps = 49/459 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+  ++ G  ++ FV++ L   Y    +   ++ VF+++   D  L+N+L+ G       
Sbjct: 146 HALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGL----SG 201

Query: 103 NEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
           +EALE F  M  + +V PD  TLA++   + E+ +  +G  +H    K G      +   
Sbjct: 202 SEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTG 261

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+S+Y KCG      +LFD M   ++ ++N                              
Sbjct: 262 LISLYAKCGDMECARHLFDRMEGPDLVTYN------------------------------ 291

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
               A+I+GY  NG +  ++ LF E+ +   + P+  +LV+++P  S          +H 
Sbjct: 292 ----ALISGYSINGMVGSSVELFKEL-VGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHA 346

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
             ++  L+ +  +  AL  +Y +   +D ARR F D+   K   +W++++SGY  +G   
Sbjct: 347 HVVKAGLDANAPVSTALTTLYCRFNDMDSARRAF-DAMPEKTMESWNAMISGYAQNGLTE 405

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
            AV L+ +M  L  +P+ +TI   LSAC + G ++ G  ++  + N  +++    +   +
Sbjct: 406 MAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANE-KLELNVYVMTAL 464

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           +DM  + G +  A     +M  +   S W  ++S   +HG        YK ++     +P
Sbjct: 465 IDMYVKCGSIAEARCIFDSMDNKNVVS-WNVMISGYGLHGQGAEALKLYKDMMDAH-LHP 522

Query: 462 SNYVSLSNLYASSRRW---DAVAELRTMMKDRGLKKSPG 497
           ++   LS LYA S      +     R+M  D G+  +PG
Sbjct: 523 TSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGI--TPG 559



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 175/425 (41%), Gaps = 92/425 (21%)

Query: 47  LSLGH--ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
           L+ GH  + +   S+ L+   +L   P     ++ +    D +L NSL+           
Sbjct: 48  LASGHYTLDHAPASSLLLRYASLRSPPAHLLRLYRAFPRPDRFLRNSLLRSLPT------ 101

Query: 105 ALELFSNMYYSNVSPDDFTLA-------------TISKLSGEIKDLNVGMLIHGLSIKIG 151
              L +++ +   SPD F+ A              IS  S     L     +H L++  G
Sbjct: 102 ---LRADLLFP--SPDSFSFAFAATSLASSCSRGGISPPSAASAALRP---LHALAVASG 153

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F  D  +A++L  +Y    + ++                                  +R+
Sbjct: 154 FAADNFVASALAKLYFTLSRGND----------------------------------ARK 179

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VFD +   +   W  ++ G   +    EAL  F+ M     + P+  +L SVLP  + + 
Sbjct: 180 VFDAVPSPDTVLWNTLLAGLSGS----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVA 235

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
             + G+ +H F  +  L     +   LI +Y+KCG ++CAR +F D     D +T+++++
Sbjct: 236 NTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLF-DRMEGPDLVTYNALI 294

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV-----------LSACGRSGLINEGLE 380
           SGY ++G    +V L+ ++V +G +P   T+V +           L+ C  + ++  GL+
Sbjct: 295 SGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLD 354

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
             N+ ++T     TT  C        R   +D A      MP E +   W A++S    +
Sbjct: 355 A-NAPVSTAL---TTLYC--------RFNDMDSARRAFDAMP-EKTMESWNAMISGYAQN 401

Query: 441 GNSEM 445
           G +EM
Sbjct: 402 GLTEM 406


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/517 (32%), Positives = 280/517 (54%), Gaps = 38/517 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           S T+   L         K  K+ H  I+ +  H+ + F+ + L+  Y  C     +Q VF
Sbjct: 349 SVTLASLLPALTELNGFKQGKEIHGYIVRNCAHV-DVFLVSALVDIYFKCRDVRMAQNVF 407

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           ++ +  DV + +++I+GYV N     A+++F  +    + P+   +A+       +  + 
Sbjct: 408 DATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMR 467

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  +HG  +K  +     + ++LM MY KCG+    L+L                    
Sbjct: 468 IGQELHGYVLKNAYEGRCYVESALMDMYSKCGR----LDL-------------------- 503

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                     S  +F +M  ++   W +MI+ + QNG+ +EAL LF +M + + ++ N V
Sbjct: 504 ----------SHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQM-IMEGVKYNNV 552

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           ++ S+L  C+ L  +  GK+IHG  I+  +  D+   +ALIDMY KCG+L+ A RVFE  
Sbjct: 553 TISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHM 612

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
              K+ ++W+SI+S YG HG   E+V L   M   G K D +T + ++SAC  +G + EG
Sbjct: 613 P-EKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEG 671

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           L ++  +   Y I+P  E  +C+VD+  RAG+LD+A+ FI  MP +P   IWGAL+ A  
Sbjct: 672 LRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACR 731

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           +H N E+ ++A + L +L+P N   YV +SN+ A + RWD V+++R +MKD+ ++K PG 
Sbjct: 732 VHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGY 791

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           SW+ ++  +H F  ADK HP S  IY  L  LI+ ++
Sbjct: 792 SWVDVNNTSHLFVAADKNHPDSEEIYMSLKSLIIELK 828



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/424 (29%), Positives = 213/424 (50%), Gaps = 40/424 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + ++  A   +L L +  H    +LG   + +V + LI  YA  G    ++ VF+ +
Sbjct: 149 TLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGM 208

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D  L+N +++GYVK      A+ LF  M  S   P+  TLA    +     DL  G+
Sbjct: 209 DERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGV 268

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H L++K G   +V +AN+L+SMY KC    E   LF  MP+ ++ +WN          
Sbjct: 269 QLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWN---------- 318

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                    MI+G VQNG +D+AL LF +MQ K  ++P+ V+L 
Sbjct: 319 ------------------------GMISGCVQNGLVDDALRLFCDMQ-KSGLQPDSVTLA 353

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+LP  + L G   GK+IHG+ +R   + DV L +AL+D+Y KC  +  A+ VF D++ +
Sbjct: 354 SLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVF-DATKS 412

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
            D +  S+++SGY L+     AV ++  ++ LG KP+ + +   L AC     +  G E+
Sbjct: 413 IDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQEL 472

Query: 382 YNSVI-NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           +  V+ N Y  +   E  + ++DM  + G+LD +      M  +   + W +++S+   +
Sbjct: 473 HGYVLKNAYEGRCYVE--SALMDMYSKCGRLDLSHYMFSKMSAKDEVT-WNSMISSFAQN 529

Query: 441 GNSE 444
           G  E
Sbjct: 530 GEPE 533



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 160/367 (43%), Gaps = 44/367 (11%)

Query: 29  VSATHRSLKLTKQSHSQILSLGHISNP---FVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
           V+ +H  L L   + +    L   + P    + T+L+  Y L  +   +  VF+S+    
Sbjct: 47  VAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLPRAA 106

Query: 86  VYL---YNSLINGYVKNHGHNEALELFSNMYY--SNVSPDDFTLATISKLSGEIKDLNVG 140
                 +N LI G+     H  A+  +  M+   S+  PD  TL  + K    +  L++G
Sbjct: 107 AAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLG 166

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
            L+H  +  +G   D+ + ++L+ MY   G       +FD M +R+   WNV + G    
Sbjct: 167 RLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDG---- 222

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                         YV+ GD+  A+ LF  M+     +PN  +L
Sbjct: 223 ------------------------------YVKAGDVASAVGLFRVMRASG-CDPNFATL 251

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
              L  C++   L  G Q+H  A++  L  +V++ N L+ MY+KC  L+ A R+F     
Sbjct: 252 ACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMP- 310

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
             D +TW+ ++SG   +G   +A+ L+  M   G +PD +T+  +L A        +G E
Sbjct: 311 RDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKE 370

Query: 381 IYNSVIN 387
           I+  ++ 
Sbjct: 371 IHGYIVR 377



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 2/176 (1%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            Y + T+   L   A   ++   K+ H  I+     ++ F  + LI  Y  CG    +  
Sbjct: 548 KYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALR 607

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF  +  K+   +NS+I+ Y  +    E+++L   M       D  T   +         
Sbjct: 608 VFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQ 667

Query: 137 LNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSW 190
           +  G+ L   ++ +      V   + ++ +Y + GK  + +    +MP + + G W
Sbjct: 668 VQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIW 723


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 177/478 (37%), Positives = 264/478 (55%), Gaps = 9/478 (1%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           S+ F+   L+  Y  CG    ++ +F+ +  +D   +NS+I+GYVK+     A ELF  M
Sbjct: 155 SDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVM 214

Query: 113 YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
                +   +  + IS  +   + L V   +     K     D+I  NS++   VKCGK 
Sbjct: 215 PMEQKNLISWN-SMISGYARSEEGLRVAWELFEEMPK----RDLISWNSMIDGCVKCGKM 269

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
               +LF++MP+R+V SW   + G+A  G+  +   +R +FD+M  R+V +  AM+ GYV
Sbjct: 270 ENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDI---ARGLFDEMPERDVISCNAMMAGYV 326

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG L EAL  F +M  +  + P+  +L+  L   + L     G  +H +      +   
Sbjct: 327 QNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSE 386

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            L  ALIDMY+KCGS+D A  VFED   +K    W++I+ G  +HG G  A  L+ +M  
Sbjct: 387 KLGVALIDMYAKCGSIDNALSVFEDID-DKSIDHWNAIIGGLAIHGLGEVAFELFMEMEK 445

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
           L  KPD IT +GVL+AC  +GL+ EGL  +  +   ++++P  +   C+VD+LGRAG ++
Sbjct: 446 LFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVE 505

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A  F++ MP+EP+  +W  L+SA   H N  + +   K LI ++  NPS+YV LSN+YA
Sbjct: 506 EAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYA 565

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
               W+ V  +R MMK R LKK PGCS I + G  H F V DK+HP    IY MLD L
Sbjct: 566 GFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQVREIYSMLDSL 623



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 218/438 (49%), Gaps = 32/438 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV--------FNSIQHK- 84
           ++L    Q HS++++ G I+NP ++T++I  ++        +          F     K 
Sbjct: 25  KTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQ 84

Query: 85  -DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
            + +L+N++I  +       EA  +F+ M  + V  D F+ + + K    +  +  GM I
Sbjct: 85  DNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQI 144

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           HGL  ++    DV L N LM +Y++CG       LFD M +R+  S+N  I G+   G  
Sbjct: 145 HGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHG-- 202

Query: 204 SLVVRSRRVFD--QMKRRNVYAWTAMINGYVQNGD-LDEALVLFLEMQLKDRIEPNKVSL 260
            +V  +R +FD   M+++N+ +W +MI+GY ++ + L  A  LF EM  +D I  N    
Sbjct: 203 -MVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWN---- 257

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            S++  C     +     +     ++++   VS  N ++D Y+K G +D AR +F++   
Sbjct: 258 -SMIDGCVKCGKMENAHHLFNQMPKRDV---VSWAN-MVDGYAKLGEIDIARGLFDEMP- 311

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-PDIITIVGVLSACGRSGLINEGL 379
            +D I+ +++++GY  +G   EA+  ++ M+      PD  T++  LSA  + G  +EG+
Sbjct: 312 ERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGV 371

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            ++   I       + ++   ++DM  + G +D AL   + +  + S   W A++    +
Sbjct: 372 ALH-CYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDID-DKSIDHWNAIIGGLAI 429

Query: 440 HGNSEMQDLAYKSLIQLE 457
           HG   + ++A++  +++E
Sbjct: 430 HG---LGEVAFELFMEME 444



 Score = 45.4 bits (106), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 105/263 (39%), Gaps = 34/263 (12%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE-ALELFSNMYYS 115
           +   LI  YA CG    +  VF  I  K +  +N++I G +  HG  E A ELF  M   
Sbjct: 388 LGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGG-LAIHGLGEVAFELFMEMEKL 446

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGML-------IHGLSIKI---GFVVDVILANSLMSM 165
            V PDD T   +         +  G++       +H +  K+   G +VD++        
Sbjct: 447 FVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDIL-------- 498

Query: 166 YVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
             + G   E     ++MP + N   W   +S   +  +F++     +    +   N  ++
Sbjct: 499 -GRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSY 557

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
             + N Y   G  ++   + + M+ +D         +  +P CS  I L G   +H F +
Sbjct: 558 VLLSNIYAGFGMWNDVYRIRMMMKQRD---------LKKIPGCSQ-IELEG--NVHEFFV 605

Query: 285 RKELNHDVSLCNALIDMYSKCGS 307
           R + +  V    +++D  S   S
Sbjct: 606 RDKSHPQVREIYSMLDSLSALNS 628


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 270/489 (55%), Gaps = 37/489 (7%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N   S  LI  Y   G    ++ VF+ +  + +  +N++I G ++   + E L LF  M+
Sbjct: 24  NFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMH 83

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
               SPD++TL ++   S  ++ +++G  IHG +IK G  +D+++ +SL  MY++ GK  
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQ 143

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
                                       D  +V+RS      M  RN+ AW  +I G  Q
Sbjct: 144 ----------------------------DGEIVIRS------MPVRNLVAWNTLIMGNAQ 169

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           NG  +  L L+  M++     PNK++ V+VL +CS L     G+QIH  AI+   +  V+
Sbjct: 170 NGCPETVLYLYKMMKISG-CRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVA 228

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           + ++LI MYSKCG L  A + F +   ++D + WSS++S YG HG+G EA+ L+N M   
Sbjct: 229 VVSSLISMYSKCGCLGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQ 287

Query: 354 GS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
              + + +  + +L AC  SGL ++GLE+++ ++  Y  KP  +   CVVD+LGRAG LD
Sbjct: 288 TEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLD 347

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
           +A   IK+MP++P P IW  L+SA  +H N+EM    +K +++++P + + YV L+N++A
Sbjct: 348 QAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVLLANVHA 407

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
           S++RW  V+E+R  M+D+ +KK  G SW    G+ H F + D++   S  IY  L +L L
Sbjct: 408 SAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTL 467

Query: 533 IMRGAAASP 541
            M+     P
Sbjct: 468 EMKLKGYKP 476



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 170/360 (47%), Gaps = 18/360 (5%)

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           MSMY K G     + L++ M ++N  S N+ I+G+  +GD   +V +R+VFD+M  R + 
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGD---LVSARKVFDEMPDRKLT 57

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W AMI G +Q    +E L LF EM       P++ +L SV    + L  +S G+QIHG+
Sbjct: 58  TWNAMIAGLIQFEYNEEGLSLFREMHGLG-FSPDEYTLGSVFSGSAGLRSVSIGQQIHGY 116

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
           AI+  L  D+ + ++L  MY + G L     V       ++ + W++++ G   +G    
Sbjct: 117 AIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPV-RNLVAWNTLIMGNAQNGCPET 175

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
            + LY  M   G +P+ IT V VLS+C    +  +G +I+   I          + + ++
Sbjct: 176 VLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKI-GASSVVAVVSSLI 234

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
            M  + G L  A         E    +W +++SA   HG  +     + S+ + + E   
Sbjct: 235 SMYSKCGCLGDAAKAFSEREDE-DEVMWSSMISAYGFHGQGDEAIKLFNSMAE-QTEMEV 292

Query: 463 NYVSLSN-LYASSRRW--DAVAELRTMMKDR-GLKKSPGCSW----ISIHGKTHCFSVAD 514
           N V+  N LYA S     D   EL  MM ++ G K  PG       + + G+  C   A+
Sbjct: 293 NEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFK--PGLKHYTCVVDLLGRAGCLDQAE 350



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 138/323 (42%), Gaps = 35/323 (10%)

Query: 30  SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
           SA  RS+ + +Q H   +  G   +  V++ L   Y   G+    ++V  S+  +++  +
Sbjct: 101 SAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAW 160

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           N+LI G  +N      L L+  M  S   P+  T  T+     ++     G  IH  +IK
Sbjct: 161 NTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK 220

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
           IG    V + +SL+SMY KCG    CL                        GD      +
Sbjct: 221 IGASSVVAVVSSLISMYSKCG----CL------------------------GD------A 246

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
            + F + +  +   W++MI+ Y  +G  DEA+ LF  M  +  +E N+V+ +++L  CS 
Sbjct: 247 AKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSH 306

Query: 270 LIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
                 G ++    + K      +     ++D+  + G LD A  + +      D + W 
Sbjct: 307 SGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWK 366

Query: 329 SIVSGYGLHGKGHEAVLLYNKMV 351
           +++S   +H     A  ++ +++
Sbjct: 367 TLLSACNIHKNAEMAQKVFKEIL 389


>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g55740, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
 gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 830

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 181/556 (32%), Positives = 294/556 (52%), Gaps = 43/556 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  TV   L  SA    ++  KQSH+  +  G   +  + T L+  Y   G    +++VF
Sbjct: 273 TRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVF 332

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  KDV  +N +I+GYV+     +A+ +   M    +  D  TLAT+   +   ++L 
Sbjct: 333 DRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLK 392

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  +    I+  F  D++LA+++M MY KCG   +   +FD   ++++  WN  ++ +A
Sbjct: 393 LGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 452

Query: 199 SSG----------------------DFSLVV----------RSRRVFDQMKRR----NVY 222
            SG                       ++L++           ++ +F QM+      N+ 
Sbjct: 453 ESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLI 512

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +WT M+NG VQNG  +EA++   +MQ +  + PN  S+   L  C+ L  L  G+ IHG+
Sbjct: 513 SWTTMMNGMVQNGCSEEAILFLRKMQ-ESGLRPNAFSITVALSACAHLASLHIGRTIHGY 571

Query: 283 AIRKELNHD--VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
            IR  L H   VS+  +L+DMY+KCG ++ A +VF    +++  ++ ++++S Y L+G  
Sbjct: 572 IIRN-LQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLS-NAMISAYALYGNL 629

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            EA+ LY  +  +G KPD ITI  VLSAC  +G IN+ +EI+  +++   +KP  E    
Sbjct: 630 KEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGL 689

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+L  AG+ ++AL  I+ MP +P   +  +LV++      +E+ D   + L++ EPEN
Sbjct: 690 MVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPEN 749

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK--THCFSVADKAHP 518
             NYV++SN YA    WD V ++R MMK +GLKK PGCSWI I G+   H F   DK H 
Sbjct: 750 SGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHT 809

Query: 519 CSVSIYEMLDDLILIM 534
               I  ML  L+  M
Sbjct: 810 RINEIQMMLALLLYDM 825



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 134/489 (27%), Positives = 224/489 (45%), Gaps = 49/489 (10%)

Query: 7   RNTFALVTSRNYTSATVQ-----HFLQVSATHRSLKLTKQSHSQILSLG--HISNPFVST 59
           +   +LVT  ++ +  +        LQ     R L   KQ H++IL  G  +  N ++ T
Sbjct: 52  KEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIET 111

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           KL+  YA C     ++++F+ ++ ++V+ + ++I    +      AL  F  M  + + P
Sbjct: 112 KLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFP 171

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D+F +  + K  G +K    G  +HG  +K G    V +A+SL  MY KCG   +   +F
Sbjct: 172 DNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVF 231

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           DE+P RN  +WN  + G                                  YVQNG  +E
Sbjct: 232 DEIPDRNAVAWNALMVG----------------------------------YVQNGKNEE 257

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           A+ LF +M+ K  +EP +V++ + L   +++ G+  GKQ H  AI   +  D  L  +L+
Sbjct: 258 AIRLFSDMR-KQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLL 316

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           + Y K G ++ A  VF D  F KD +TW+ I+SGY   G   +A+ +   M     K D 
Sbjct: 317 NFYCKVGLIEYAEMVF-DRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDC 375

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           +T+  ++SA  R+  +  G E+    I  +  +    + + V+DM  + G +  A     
Sbjct: 376 VTLATLMSAAARTENLKLGKEVQCYCIR-HSFESDIVLASTVMDMYAKCGSIVDAKKVFD 434

Query: 420 TMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
           +  VE    +W  L++A    G S E   L Y   +QLE   P N ++ + +  S  R  
Sbjct: 435 S-TVEKDLILWNTLLAAYAESGLSGEALRLFYG--MQLEGV-PPNVITWNLIILSLLRNG 490

Query: 479 AVAELRTMM 487
            V E + M 
Sbjct: 491 QVDEAKDMF 499



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 14/223 (6%)

Query: 228 INGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           ++   +NG++ EAL L  EM  ++ RI P       +L  C     LS GKQIH   ++ 
Sbjct: 42  VSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYG--EILQGCVYERDLSTGKQIHARILK- 98

Query: 287 ELNHDVSLCNALID-----MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
             N D    N  I+      Y+KC +L+ A  +F      ++  +W++I+      G   
Sbjct: 99  --NGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRV-RNVFSWAAIIGVKCRIGLCE 155

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
            A++ + +M+     PD   +  V  ACG       G  ++  V+ +  ++    + + +
Sbjct: 156 GALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKS-GLEDCVFVASSL 214

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            DM G+ G LD A      +P + +   W AL+   V +G +E
Sbjct: 215 ADMYGKCGVLDDASKVFDEIP-DRNAVAWNALMVGYVQNGKNE 256


>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
          Length = 530

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/480 (33%), Positives = 261/480 (54%), Gaps = 9/480 (1%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           + T L++AYA  G P  ++ +F+ +  + +    ++   +V +    +A+ +F +M    
Sbjct: 47  LPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADG 106

Query: 117 VSPDDFTLA-TISKLSGE---IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
           V PD+  +A  +    G        N G +IH L +  G V DV ++  L+ +Y + G+ 
Sbjct: 107 VFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGEL 166

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                +FD+MP R+  +WN  +  +A  G    V  +  +F  M RR+V +W  ++ GY 
Sbjct: 167 PVSRRVFDDMPSRSTITWNAMLHQYARHGK---VDTAYEMFLAMPRRDVVSWNTVLAGYC 223

Query: 233 QNGDLDEALVLFLEMQLKDR--IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
             G   EAL LF +M       + PN  ++ ++L  C+    L  G  +H +  R  +N 
Sbjct: 224 VAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMND 283

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           D  L   LIDMY KCGS+D A +VFE +   KD  +W++++ G  +HG+  +A+ +++ M
Sbjct: 284 DGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMM 343

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G  PD +T+VGVL+AC   GL++EGL  + S+   +RI P  E   C++D+LGR G+
Sbjct: 344 QDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGR 403

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           L  A   I+TMP++P+  IWGA +SA  +HGN E+  +A + L +L+P++P   V LS++
Sbjct: 404 LQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSM 463

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YA ++ W  +A  R  M    +KK+PGCS I + G+ H F      HP    I  +L D+
Sbjct: 464 YAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDV 523


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/518 (32%), Positives = 272/518 (52%), Gaps = 43/518 (8%)

Query: 23  VQHFLQVSATHRS------LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           V   L +++T R+      L++ K  H  ++  G   +      LI  YA CG    +Q 
Sbjct: 319 VPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQE 378

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF++ + KD   +NSLINGY ++  + E LE F  M      PD  T   +  +  ++ D
Sbjct: 379 VFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLAD 437

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           +N G  IH   IK GF  ++I+ NSL+ +Y KCG+  + L +F  M   ++ SWN  I  
Sbjct: 438 INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVI-- 495

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
            ASS  F       ++ ++M+   +                                 P+
Sbjct: 496 -ASSVHFDDCTVGFQMINEMRTEGLM--------------------------------PD 522

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + +++ +LP CS L     GK+IHG+  +     +V + NALI+MYSKCGSL+   +VF+
Sbjct: 523 EATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFK 582

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
                KD +TW++++S +G++G+G +A+  +  M   G  PD +  +  + AC  SG++ 
Sbjct: 583 YMK-EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVK 641

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EGL  ++ +   Y ++P  E  ACVVD+L R+G L +A +FI +MP++P  S+WGAL+SA
Sbjct: 642 EGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSA 701

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
               GN+ +     K +++L  ++   YV +SN+YA+  +WD V  +R  MK +GLKK P
Sbjct: 702 CRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEP 761

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
           G SWI I  + + F   DK+      + ++L+ L+ +M
Sbjct: 762 GSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLM 799



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 191/396 (48%), Gaps = 40/396 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H   + +G  S+ ++   LI  Y+       ++ VF  + ++D   +NSLI+GY  N   
Sbjct: 144 HEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFW 203

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            +AL+++     + + PD FT++++    G +  +  G+ +HG+  KIG   DVI+ N L
Sbjct: 204 EDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGL 263

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           +SMY K  +  E                                  +RRVF +M  ++  
Sbjct: 264 LSMYFKFERLRE----------------------------------ARRVFSKMAVKDSV 289

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W  MI GY Q G  + ++ LF++M   D   P+ +S+ S +  C     L  GK +H +
Sbjct: 290 TWNTMICGYAQLGRHEASVKLFMDMI--DGFVPDMLSITSTIRACGQSGDLQVGKFVHKY 347

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            I      D   CN LIDMY+KCG L  A+ VF D++  KD++TW+S+++GY   G   E
Sbjct: 348 LIGSGFECDTVACNILIDMYAKCGDLLAAQEVF-DTTKCKDSVTWNSLINGYTQSGYYKE 406

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
            +  + KM+ +  KPD +T V +LS   +   IN+G  I+  VI  +  +    I   ++
Sbjct: 407 GLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIK-FGFEAELIIGNSLL 464

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           D+  + G++D  L     M      S W  ++++SV
Sbjct: 465 DVYAKCGEMDDLLKVFSYMSAHDIIS-WNTVIASSV 499



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 207/431 (48%), Gaps = 45/431 (10%)

Query: 17  NYTSATVQHFLQVS--ATHRSLKLTKQ---SHSQILSLGHISNPFVSTKLITAYALCGQP 71
           N T    Q FL+ S   T  S K T Q    HS I++ G   +   S KLI+ YA    P
Sbjct: 11  NNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDP 70

Query: 72  TQSQLVFNSIQ-HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
             S  VF SI    +VYL+NS+I     N    +AL  ++ M    + PD FT  ++   
Sbjct: 71  ISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINS 130

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
              I DL +G ++H  ++++GF  D+ + N+L+ MY +                      
Sbjct: 131 CARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSR---------------------- 168

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
                       F  +  +R VF++M  R+  +W ++I+GY  NG  ++AL ++ + ++ 
Sbjct: 169 ------------FVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMT 216

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             + P+  ++ SVL  C SL+ +  G  +HG   +  +  DV + N L+ MY K   L  
Sbjct: 217 GMV-PDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLRE 275

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           ARRVF   +  KD++TW++++ GY   G+   +V L+  M+  G  PD+++I   + ACG
Sbjct: 276 ARRVFSKMAV-KDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACG 333

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
           +SG +  G  ++  +I +   +  T  C  ++DM  + G L  A +   T   + S + W
Sbjct: 334 QSGDLQVGKFVHKYLIGS-GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVT-W 391

Query: 431 GALVSASVMHG 441
            +L++     G
Sbjct: 392 NSLINGYTQSG 402



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NVY W ++I     NG   +AL  + EM+ K +++P+  +  SV+ +C+ ++ L  G  +
Sbjct: 85  NVYLWNSIIRALTHNGLFTQALGYYTEMREK-KLQPDAFTFPSVINSCARILDLELGCIV 143

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H  A+      D+ + NALIDMYS+   LD AR VFE+ S N+D+++W+S++SGY  +G 
Sbjct: 144 HEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMS-NRDSVSWNSLISGYCSNGF 202

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             +A+ +Y+K    G  PD  T+  VL ACG    + EG+ ++  VI    I     I  
Sbjct: 203 WEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHG-VIEKIGIAGDVIIGN 261

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            ++ M  +  +L  A      M V+ S + W  ++      G  E
Sbjct: 262 GLLSMYFKFERLREARRVFSKMAVKDSVT-WNTMICGYAQLGRHE 305



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 142/350 (40%), Gaps = 14/350 (4%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ 75
           R   S T    L + +    +   +  H  ++  G  +   +   L+  YA CG+     
Sbjct: 418 RKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLL 477

Query: 76  LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
            VF+ +   D+  +N++I   V         ++ + M    + PD+ T+  I  +   + 
Sbjct: 478 KVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLA 537

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
               G  IHG   K GF  +V + N+L+ MY KCG    C+ +F  M +++V +W   IS
Sbjct: 538 VRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALIS 597

Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVY----AWTAMINGYVQNGDLDEALVLFLEMQLKD 251
                G+     ++ + F  M+   V     A+ A I     +G + E L  F  M+   
Sbjct: 598 AFGMYGEGK---KALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDY 654

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSG-GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
            +EP       V+     L+  SG   Q   F +   +  D SL  AL+      G+ + 
Sbjct: 655 NLEPRMEHYACVV----DLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNI 710

Query: 311 ARRVFEDS-SFNKDAITWSSIVSG-YGLHGKGHEAVLLYNKMVCLGSKPD 358
           A+RV +     N D   +  +VS  Y   GK  +   + N M   G K +
Sbjct: 711 AQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKE 760


>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 534

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/488 (33%), Positives = 278/488 (56%), Gaps = 19/488 (3%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H++I+   H  + FV  +LI   +       +  VF  + + +VYLY ++I+G+V +   
Sbjct: 49  HAKIIRTFHDQDAFVVFELIRVCSTLDSIDYAYDVFRYVSNPNVYLYTAMIDGFVSSGRS 108

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            + + L+  M +S+V PD++ + ++ K  G    L+    IH   +K+GF     +   L
Sbjct: 109 ADGVSLYHRMIHSSVLPDNYVITSVLKACG----LDECREIHSQVLKLGFGSSRSVGLKL 164

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           M +Y K G+ ++   +FDEMP R+     V I+ ++  G    +  +  +F  +K ++  
Sbjct: 165 MEIYGKSGELADAKKVFDEMPDRDQVVATVMINCYSECG---CIKEALELFQDVKIKDTV 221

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            WTAMI+G V+N ++++AL LF EMQL     P ++            +  S G  +H F
Sbjct: 222 CWTAMIDGLVRNREMNKALELFREMQLSVFYLPARI-----------WVRWSSGAGVHSF 270

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
              +++     + NALI+MYS+CG ++ A+RVF+    +KD I++++++SG  +HG   E
Sbjct: 271 VENQKMELSNFVGNALINMYSRCGDINVAKRVFKGMR-DKDVISYNTMISGLAMHGASVE 329

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ ++  MV  G +P+ +T+V +L+AC   GL++ GLE++NS+   + ++P  E   C+V
Sbjct: 330 AINVFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMWRVFSVEPQIEHYGCIV 389

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGR G+L+ A  FI+ M +EP   + GAL+SA  +HGN E+ +   K L + E  +  
Sbjct: 390 DLLGRVGRLEEAYRFIENMLIEPDHIMLGALLSACKIHGNMELGEKIAKRLFESENPDSG 449

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
            YV LS++YASS +W    E+R  M++ G++K PGCS I +  + H F V D AHP   +
Sbjct: 450 TYVLLSHIYASSGKWKESTEIRESMRESGIEKEPGCSTIEVDNQIHEFHVGDIAHPRKEA 509

Query: 523 IYEMLDDL 530
           IY+ L +L
Sbjct: 510 IYQRLQEL 517



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 144/383 (37%), Gaps = 88/383 (22%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQ-----------PTQSQLV----------- 77
           ++ HSQ+L LG  S+  V  KL+  Y   G+           P + Q+V           
Sbjct: 143 REIHSQVLKLGFGSSRSVGLKLMEIYGKSGELADAKKVFDEMPDRDQVVATVMINCYSEC 202

Query: 78  ---------FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128
                    F  ++ KD   + ++I+G V+N   N+ALELF  M  S           + 
Sbjct: 203 GCIKEALELFQDVKIKDTVCWTAMIDGLVRNREMNKALELFREMQLS-----------VF 251

Query: 129 KLSGEI-KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
            L   I    + G  +H         +   + N+L++MY +CG  +    +F  M  ++V
Sbjct: 252 YLPARIWVRWSSGAGVHSFVENQKMELSNFVGNALINMYSRCGDINVAKRVFKGMRDKDV 311

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
            S+N  ISG A  G     V +  VF  M  R                            
Sbjct: 312 ISYNTMISGLAMHG---ASVEAINVFRDMVNRG--------------------------- 341

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMY 302
                  PN+V+LV++L  CS    L  G ++       F++  ++ H       ++D+ 
Sbjct: 342 -----FRPNQVTLVALLNACSHGGLLDIGLEVFNSMWRVFSVEPQIEH----YGCIVDLL 392

Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362
            + G L+ A R  E+     D I   +++S   +HG       +  ++      PD  T 
Sbjct: 393 GRVGRLEEAYRFIENMLIEPDHIMLGALLSACKIHGNMELGEKIAKRLF-ESENPDSGTY 451

Query: 363 VGVLSACGRSGLINEGLEIYNSV 385
           V +      SG   E  EI  S+
Sbjct: 452 VLLSHIYASSGKWKESTEIRESM 474


>gi|326528345|dbj|BAJ93354.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 609

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 185/546 (33%), Positives = 282/546 (51%), Gaps = 55/546 (10%)

Query: 1   MILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLT-------------KQSHSQIL 47
           ++ +++R  F L      TS  ++H+L + A H +                 + +H+  L
Sbjct: 83  LLHAASRLAFRL----RLTSLALRHYLALRAGHPAFLPPAAAIGDVLKSVPGRVAHAHGL 138

Query: 48  SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ--HKDVYLYNSLINGYVKNHGHNEA 105
            L      F+   LI  Y  CG   +++ VF+ ++   +DV  + SLI+  V++    +A
Sbjct: 139 RLTDGDTRFLHNSLIPMYFSCGDAGRARRVFDGMRDCERDVVSWTSLISRLVQSGSPLQA 198

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           L LF+ M   +V PD   L T+ K   E+ DL      H L +K GF  +  +  +L +M
Sbjct: 199 LRLFAAMMCCDVRPDFVLLVTVLKAYMELDDLPGAQSAHSLVVKGGFDDEQDVVTTLTAM 258

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWT 225
           Y K G       LFD +P   V                                NV  W 
Sbjct: 259 YAKFGCIVAARALFDRIPPPRV--------------------------------NVILWN 286

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
           AMI+GY +NG   EA+ LF +MQ+  R + P+ V+L SV+  C+ L        +  +  
Sbjct: 287 AMISGYSKNGLASEAVHLFKQMQVFARSMSPDSVTLRSVIMACAQLGSTELAVWMEDYVR 346

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEA 343
           R E   DV +  ALIDMY+K GS+  ARRVFE   +  +D + WS+++SGYG HG   EA
Sbjct: 347 RSECREDVLVNTALIDMYAKSGSIAHARRVFEQMHAQERDVVVWSALISGYGAHGHLAEA 406

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           V L+  M   G KP+ +T +G+LSAC  +G + +G   ++S+   ++I+P  +  ACVVD
Sbjct: 407 VGLFEDMKLAGVKPNDVTFLGLLSACNHAGAVEKGWFYFHSMKPDHKIEPRHQHYACVVD 466

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM--HGNSEMQDLAYKSLIQLEPENP 461
           +L RAGQLDRA  FI  MP++P  S+WGAL+    +  H N  M + A + + +LE  N 
Sbjct: 467 LLARAGQLDRAYRFILDMPIKPEMSVWGALLHGCKVHEHSNMAMAERAAQHIFELEQSNA 526

Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
            +YV L+N+YAS+  W  VA +R  M++RG+ K+ GCS I + G+TH F   D +HP + 
Sbjct: 527 GHYVQLANMYASAGMWSHVAGVRATMRERGVTKATGCSSIEVDGETHNFHAWDHSHPRAA 586

Query: 522 SIYEML 527
            I+ +L
Sbjct: 587 EIFALL 592


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/518 (32%), Positives = 274/518 (52%), Gaps = 43/518 (8%)

Query: 23  VQHFLQVSATHRS------LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           V   L +++T R+      L++ K  H  ++  G   +      LI  YA CG    +Q 
Sbjct: 319 VPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQE 378

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF++ + KD   +NSLINGY ++  + E LE F  M      PD  T   +  +  ++ D
Sbjct: 379 VFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLAD 437

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           +N G  IH   IK GF  ++I+ NSL+ +Y KCG+  + L +F  M   ++ SWN  I  
Sbjct: 438 INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVI-- 495

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
            ASS  F       ++ ++M+                     E L+            P+
Sbjct: 496 -ASSVHFDDCTVGFQMINEMRT--------------------EGLM------------PD 522

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + +++ +LP CS L     GK+IHG+  +     +V + NALI+MYSKCGSL+   +VF+
Sbjct: 523 EATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFK 582

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
                KD +TW++++S +G++G+G +A+  +  M   G  PD +  +  + AC  SG++ 
Sbjct: 583 YMK-EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVK 641

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EGL  ++ +   Y ++P  E  ACVVD+L R+G L +A +FI +MP++P  S+WGAL+SA
Sbjct: 642 EGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSA 701

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
               GN+ +     K +++L  ++   YV +SN+YA+  +WD V  +R  MK +GLKK P
Sbjct: 702 CRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEP 761

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
           G SWI I  + + F   DK+      + ++L+ L+ +M
Sbjct: 762 GSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLM 799



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 191/396 (48%), Gaps = 40/396 (10%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H   + +G  S+ ++   LI  Y+       ++ VF  + ++D   +NSLI+GY  N   
Sbjct: 144 HEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFW 203

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            +AL+++     + + PD FT++++    G +  +  G+ +HG+  KIG   DVI+ N L
Sbjct: 204 EDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGL 263

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           +SMY K                                  F  +  +RRVF +M  ++  
Sbjct: 264 LSMYFK----------------------------------FERLREARRVFSKMAVKDSV 289

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
            W  MI GY Q G  + ++ LF++M   D   P+ +S+ S +  C     L  GK +H +
Sbjct: 290 TWNTMICGYAQLGRHEASVKLFMDMI--DGFVPDMLSITSTIRACGQSGDLQVGKFVHKY 347

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            I      D   CN LIDMY+KCG L  A+ VF D++  KD++TW+S+++GY   G   E
Sbjct: 348 LIGSGFECDTVACNILIDMYAKCGDLLAAQEVF-DTTKCKDSVTWNSLINGYTQSGYYKE 406

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
            +  + KM+ +  KPD +T V +LS   +   IN+G  I+  VI  +  +    I   ++
Sbjct: 407 GLESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIK-FGFEAELIIGNSLL 464

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           D+  + G++D  L     M      S W  ++++SV
Sbjct: 465 DVYAKCGEMDDLLKVFSYMSAHDIIS-WNTVIASSV 499



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 207/431 (48%), Gaps = 45/431 (10%)

Query: 17  NYTSATVQHFLQVS--ATHRSLKLTKQ---SHSQILSLGHISNPFVSTKLITAYALCGQP 71
           N T    Q FL+ S   T  S K T Q    HS I++ G   +   S KLI+ YA    P
Sbjct: 11  NNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDP 70

Query: 72  TQSQLVFNSIQ-HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
             S  VF SI    +VYL+NS+I     N    +AL  ++ M    + PD FT  ++   
Sbjct: 71  ISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINS 130

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
              I DL +G ++H  ++++GF  D+ + N+L+ MY +                      
Sbjct: 131 CARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSR---------------------- 168

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
                       F  +  +R VF++M  R+  +W ++I+GY  NG  ++AL ++ + ++ 
Sbjct: 169 ------------FVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMT 216

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             + P+  ++ SVL  C SL+ +  G  +HG   +  +  DV + N L+ MY K   L  
Sbjct: 217 GMV-PDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLRE 275

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           ARRVF   +  KD++TW++++ GY   G+   +V L+  M+  G  PD+++I   + ACG
Sbjct: 276 ARRVFSKMAV-KDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACG 333

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
           +SG +  G  ++  +I +   +  T  C  ++DM  + G L  A +   T   + S + W
Sbjct: 334 QSGDLQVGKFVHKYLIGS-GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVT-W 391

Query: 431 GALVSASVMHG 441
            +L++     G
Sbjct: 392 NSLINGYTQSG 402



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NVY W ++I     NG   +AL  + EM+ K +++P+  +  SV+ +C+ ++ L  G  +
Sbjct: 85  NVYLWNSIIRALTHNGLFTQALGYYTEMREK-KLQPDAFTFPSVINSCARILDLELGCIV 143

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H  A+      D+ + NALIDMYS+   LD AR VFE+ S N+D+++W+S++SGY  +G 
Sbjct: 144 HEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMS-NRDSVSWNSLISGYCSNGF 202

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             +A+ +Y+K    G  PD  T+  VL ACG    + EG+ ++  VI    I     I  
Sbjct: 203 WEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHG-VIEKIGIAGDVIIGN 261

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            ++ M  +  +L  A      M V+ S + W  ++      G  E
Sbjct: 262 GLLSMYFKFERLREARRVFSKMAVKDSVT-WNTMICGYAQLGRHE 305



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 142/351 (40%), Gaps = 14/351 (3%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
            R   S T    L + +    +   +  H  ++  G  +   +   L+  YA CG+    
Sbjct: 417 ERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDL 476

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI 134
             VF+ +   D+  +N++I   V         ++ + M    + PD+ T+  I  +   +
Sbjct: 477 LKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLL 536

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
                G  IHG   K GF  +V + N+L+ MY KCG    C+ +F  M +++V +W   I
Sbjct: 537 AVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALI 596

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVY----AWTAMINGYVQNGDLDEALVLFLEMQLK 250
           S     G+     ++ + F  M+   V     A+ A I     +G + E L  F  M+  
Sbjct: 597 SAFGMYGEGK---KALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTD 653

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSG-GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
             +EP       V+     L+  SG   Q   F +   +  D SL  AL+      G+ +
Sbjct: 654 YNLEPRMEHYACVV----DLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTN 709

Query: 310 CARRVFEDS-SFNKDAITWSSIVSG-YGLHGKGHEAVLLYNKMVCLGSKPD 358
            A+RV +     N D   +  +VS  Y   GK  +   + N M   G K +
Sbjct: 710 IAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKE 760


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 165/496 (33%), Positives = 268/496 (54%), Gaps = 44/496 (8%)

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           +V  +N++++G  ++    EAL + ++M    + PD  T++++ K       L  GM IH
Sbjct: 238 NVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 297

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
              ++     DV    +L+ MY KCG+      +FD +  RN+ +WN  ++G+A++G F 
Sbjct: 298 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFD 357

Query: 205 LVVRSRRVFDQMKRR---------------------------------------NVYAWT 225
           + +    + + MK+                                        NV +WT
Sbjct: 358 IALE---LVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWT 414

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           ++I+G   NG+ +++     EMQ KD ++P+ V++  +L  C+ L     GK++H FA+R
Sbjct: 415 SLISGSCHNGEYEDSFYFCHEMQ-KDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 473

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
           +  + D+ +  ALIDMYSK GSL  A+ +FE S   K+ +  +++++G  +HG+G EA+ 
Sbjct: 474 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFE-SIQQKNLVLCNAMLTGLAVHGQGREAIE 532

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           L++ M   G KPD IT   +L+AC   GL+ EG E ++ +   Y +KPTTE  AC+VD+L
Sbjct: 533 LFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPTTENYACMVDLL 592

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
            R G LD A+DFI+  P++P  S WGAL++   +HGN  + ++A ++L +LEP N +NY+
Sbjct: 593 ARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFRLEPYNSANYL 652

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYE 525
            + NLY   R +D    L+  MK RG+   PG SWI I    H F V  K HP +  IYE
Sbjct: 653 LMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYE 712

Query: 526 MLDDLILIMRGAAASP 541
            L  L+  ++ A   P
Sbjct: 713 ELIRLVFQIKKAGYVP 728



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 181/420 (43%), Gaps = 64/420 (15%)

Query: 33  HR-SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ-PTQSQLVFNSIQH--KDVYL 88
           HR + +L  Q HS  +  G   +P V+  L+   A  G+ P+ ++L+  + +   KD  L
Sbjct: 64  HRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVL 123

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +N  +    +    +EA+ +F  M    V                      G  +H  ++
Sbjct: 124 WNKHVAMLAEAEEWDEAIAVFREMQARGVPR------------------RRGRAVHAYAL 165

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K+      ++   L  MY +    +    + D M   +V  WN  ++  A  G   LV  
Sbjct: 166 KLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLG---LVDD 222

Query: 209 SRRVFDQMKRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           +  +  +M R     NV  W  +++G  ++G   EAL +   M LK  + P+  ++ S+L
Sbjct: 223 ALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASM-LKQGLRPDATTVSSLL 281

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            + ++   L  G +IH F +R +L  DV    AL+DMY+KCG LDCA++VF D+  +++ 
Sbjct: 282 KSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVF-DALEHRNL 340

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
            TW+S+V+GY   G+   A+ L   M      PDI T                    +N 
Sbjct: 341 TTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITT--------------------WNG 380

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +I  Y              M G++ Q    L  IK   V P+   W +L+S S  +G  E
Sbjct: 381 LITGY-------------SMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYE 427



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 125/293 (42%), Gaps = 44/293 (15%)

Query: 54  NPFVST--KLITAYALCGQPTQSQLVFNSIQHK----DVYLYNSLINGYVKNHGHNEALE 107
           +P ++T   LIT Y++ GQ +Q+ L+   I+      +V  + SLI+G   N  + ++  
Sbjct: 372 DPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFY 431

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
               M    V P   T++ + +    +     G  +H  +++  +  D++++ +L+ MY 
Sbjct: 432 FCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYS 491

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           K G       +F+ + Q+N+   N                                  AM
Sbjct: 492 KGGSLVSAKVIFESIQQKNLVLCN----------------------------------AM 517

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL--SGGKQIHGFAIR 285
           + G   +G   EA+ LF +M     ++P+ ++  ++L  C S+ GL   G +   G   +
Sbjct: 518 LTGLAVHGQGREAIELFHDM-WNSGLKPDSITFTALLTACRSM-GLVTEGWEYFDGMETK 575

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
             +         ++D+ ++CG LD A    E S  +  A  W ++++G  +HG
Sbjct: 576 YGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHG 628



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 2/216 (0%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           K  K+ H   L   +  +  VST LI  Y+  G    ++++F SIQ K++ L N+++ G 
Sbjct: 462 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 521

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFVVD 155
             +    EA+ELF +M+ S + PD  T   +      +  +  G     G+  K G    
Sbjct: 522 AVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPT 581

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
                 ++ +  +CG   E ++  +  P       W   ++G +  G+ +L   + R   
Sbjct: 582 TENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLF 641

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
           +++  N   +  M+N Y      DEA  L   M+ +
Sbjct: 642 RLEPYNSANYLLMMNLYEYERMYDEAESLKYAMKAR 677



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 133/349 (38%), Gaps = 58/349 (16%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H L+++ G   D  +  +L+ +  + G+   C  L  E  +                  
Sbjct: 74  LHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGA--------------- 118

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                           ++   W   +    +  + DEA+ +F EMQ +            
Sbjct: 119 ----------------KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG----------- 151

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
                   +    G+ +H +A++  L+    +   L  MY++   +  A RV  D+    
Sbjct: 152 --------VPRRRGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVL-DAMGAG 202

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
             + W+++V+     G   +A+ L  +M   G +P++ T   VLS C R G   E L + 
Sbjct: 203 SVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVV 262

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALD---FIKTMPVEPSPSIWGALVSASVM 439
            S++    ++P     + ++  +   G L   ++   F     +EP      ALV    M
Sbjct: 263 ASMLKQ-GLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVD---M 318

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
           +      D A K    LE  N + + SL   YA++ R+D   EL  +MK
Sbjct: 319 YAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDIALELVELMK 367


>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 503

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 153/497 (30%), Positives = 273/497 (54%), Gaps = 37/497 (7%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
            K++H+Q++  GH  +PF++ +LI  Y+       ++ VF+++   DV+  N +I  Y  
Sbjct: 36  VKKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYAN 95

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
                EAL+++  M +  ++P+ +T   + K  G       G +IHG ++K G  +D+ +
Sbjct: 96  ADPFGEALKVYDAMRWRGITPNYYTYPFVLKACGAEGASKKGRVIHGHAVKCGMDLDLFV 155

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            N+L++ Y KC                                    V  SR+VFD++  
Sbjct: 156 GNALVAFYAKCQD----------------------------------VEVSRKVFDEIPH 181

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE-PNKVSLVSVLPTCSSLIGLSGGK 277
           R++ +W +MI+GY  NG +D+A++LF +M   + +  P+  + V+VLP  +    +  G 
Sbjct: 182 RDIVSWNSMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGY 241

Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            IH + ++  +  D ++   LI +YS CG +  AR +F+  S ++  I WS+I+  YG H
Sbjct: 242 WIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRIS-DRSVIVWSAIIRCYGTH 300

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
           G   EA+ L+ ++V  G +PD +  + +LSAC  +GL+ +G  ++N+ + TY +  +   
Sbjct: 301 GLAQEALALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNA-METYGVAKSEAH 359

Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
            AC+VD+LGRAG L++A++FI++MP++P  +I+GAL+ A  +H N E+ +LA + L  L+
Sbjct: 360 YACIVDLLGRAGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLD 419

Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           P+N   YV L+ +Y  + RW   A +R ++KD+ +KK  G S + +      F V D+ H
Sbjct: 420 PDNAGRYVILAQMYEDAERWQDAARVRKVVKDKEIKKPIGYSSVELESGHQKFGVNDETH 479

Query: 518 PCSVSIYEMLDDLILIM 534
             +  I+++L  L  IM
Sbjct: 480 VHTTQIFQILHSLDRIM 496



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 134/352 (38%), Gaps = 50/352 (14%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           +T   YT   V   L+      + K  +  H   +  G   + FV   L+  YA C    
Sbjct: 114 ITPNYYTYPFV---LKACGAEGASKKGRVIHGHAVKCGMDLDLFVGNALVAFYAKCQDVE 170

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV--SPDDFTLATISKL 130
            S+ VF+ I H+D+  +NS+I+GY  N   ++A+ LF +M        PD  T  T+   
Sbjct: 171 VSRKVFDEIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPA 230

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
             +  D++ G  IH   +K    +D  +   L+S+Y  CG       +FD +  R     
Sbjct: 231 FAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDR----- 285

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
                                        +V  W+A+I  Y  +G   EAL LF ++ + 
Sbjct: 286 -----------------------------SVIVWSAIIRCYGTHGLAQEALALFRQL-VG 315

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGG----KQIHGFAIRKELNHDVSLCNALIDMYSKCG 306
             + P+ V  + +L  CS    L  G      +  + + K   H       ++D+  + G
Sbjct: 316 AGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYA----CIVDLLGRAG 371

Query: 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
            L+ A    +          + +++    +H     A L   K+  L   PD
Sbjct: 372 DLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVL--DPD 421


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/456 (34%), Positives = 254/456 (55%), Gaps = 36/456 (7%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +F+ +  +DV  +N++I G  +N  + EAL +   M   N+ PD FTL++I  +  E  +
Sbjct: 155 LFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHAN 214

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           +  G  IHG +I+ GF  DV + +SL+ MY KC +                         
Sbjct: 215 VTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQ------------------------- 249

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                    V  S   F  +  R+  +W ++I G VQNG  D+ L  F  M LK++++P 
Sbjct: 250 ---------VELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRM-LKEKVKPM 299

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           +VS  SV+P C+ L  L+ GKQ+H + IR   + +  + ++L+DMY+KCG++  AR +F 
Sbjct: 300 QVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFN 359

Query: 317 DSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
                ++D ++W++I+ G  +HG   +AV L+ +M+  G KP  +  + VL+AC  +GL+
Sbjct: 360 KIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLV 419

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           +EG + +NS+   + + P  E  A V D+LGRAG+L+ A DFI  M  EP+ S+W  L++
Sbjct: 420 DEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLA 479

Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
           A   H N E+ +     ++ ++P N   +V +SN+Y++++RW   A+LR  M+  GLKK+
Sbjct: 480 ACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKT 539

Query: 496 PGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           P CSWI +  K H F   DK+HP    I E L+ L+
Sbjct: 540 PACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILL 575



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 171/329 (51%), Gaps = 18/329 (5%)

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           +SPD     ++ + S   K  N+   +H   I++GF  D+  AN+LM+MY    KF   L
Sbjct: 72  ISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMY---SKFHPHL 128

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS-RRVFDQMKRRNVYAWTAMINGYVQNG 235
           +   E PQ          + H  +  +S+ + S R++FD+M  R+V +W  +I G  QNG
Sbjct: 129 SPLHEFPQ----------ARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNG 178

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC 295
             +EAL +  EM  K+ + P+  +L S+LP  +    ++ GK+IHG+AIR   + DV + 
Sbjct: 179 MYEEALNMVKEMG-KENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIG 237

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
           ++LIDMY+KC  ++ +   F   S N+DAI+W+SI++G   +G+  + +  + +M+    
Sbjct: 238 SSLIDMYAKCTQVELSVCAFHLLS-NRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKV 296

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA- 414
           KP  ++   V+ AC     +N G +++  +I          I + ++DM  + G +  A 
Sbjct: 297 KPMQVSFSSVIPACAHLTALNLGKQLHAYIIRL-GFDDNKFIASSLLDMYAKCGNIKMAR 355

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNS 443
             F K    +     W A++    MHG++
Sbjct: 356 YIFNKIEMCDRDMVSWTAIIMGCAMHGHA 384



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 144/340 (42%), Gaps = 52/340 (15%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L +   H ++   K+ H   +  G   + F+ + LI  YA C Q   S   F+
Sbjct: 199 SFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFH 258

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            + ++D   +NS+I G V+N   ++ L  F  M    V P   + +++      +  LN+
Sbjct: 259 LLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNL 318

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD--EMPQRNVGSWNVRISGH 197
           G  +H   I++GF  +  +A+SL+ MY KCG       +F+  EM  R++ SW       
Sbjct: 319 GKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSW------- 371

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                                      TA+I G   +G   +A+ LF EM L D ++P  
Sbjct: 372 ---------------------------TAIIMGCAMHGHALDAVSLFEEM-LVDGVKPCY 403

Query: 258 VSLVSVLPTCSSLIGL--SGGKQIHG----FAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
           V+ ++VL  CS   GL   G K  +     F +   L H      A+ D+  + G L+ A
Sbjct: 404 VAFMAVLTACSH-AGLVDEGWKYFNSMQRDFGVAPGLEHYA----AVADLLGRAGRLEEA 458

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
                +         WS++++      + H+ + L  K+V
Sbjct: 459 YDFISNMGEEPTGSVWSTLLAA----CRAHKNIELAEKVV 494


>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g29230-like [Glycine max]
          Length = 446

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/389 (40%), Positives = 230/389 (59%), Gaps = 4/389 (1%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           DV+L N ++S Y++ G       LFD MP  +V SWN  +SG+A++G+  L V+   VF+
Sbjct: 55  DVVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVK---VFE 111

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
           +M  RNVY+W  +I GYV+NG   EAL  F  M +   + PN  ++V+VL  CS L  L 
Sbjct: 112 EMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLE 171

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK +H +A       ++ + NALIDMY+KCG ++ A  VF+     KD ITW++I++  
Sbjct: 172 IGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDV-KDIITWNTIINSL 230

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            +H    +A+ L+  M   G +PD +T VG+LSAC   GL+  G   + S+++ Y I P 
Sbjct: 231 AMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQ 290

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+VD+LGRAG +++A+D ++ MP+EP   IW AL+ A   + N EM +LA + LI
Sbjct: 291 IEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLI 350

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEP NP N+V LSN+Y    R   VA L+  M+D G +K PGCS I  +     F   D
Sbjct: 351 ELEPNNPGNFVMLSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSVVEFYSLD 410

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           + HP + SIY  L  L +++R     P+L
Sbjct: 411 ERHPETDSIYRALQGLTILLRSHGYVPNL 439



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 119/279 (42%), Gaps = 45/279 (16%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS-P 119
           +++ YA  G+      VF  +  ++VY +N LI GYV+N    EALE F  M    V  P
Sbjct: 93  VLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVP 152

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +D+T+  +      + DL +G  +H  +  IG+  ++ + N+L+ MY KCG   + L++F
Sbjct: 153 NDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVF 212

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           D +  +++ +WN                                   +IN    +    +
Sbjct: 213 DGLDVKDIITWN----------------------------------TIINSLAMHXHAAD 238

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG-----KQIHGFAIRKELNHDVSL 294
           AL LF  M+      P+ V+ V +L  C+ +  +  G       +  + I  ++ H    
Sbjct: 239 ALSLFEGMKRAGE-RPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEH---- 293

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
              ++D+  + G ++ A  +        D + W++++  
Sbjct: 294 YGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGA 332



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 118/250 (47%), Gaps = 33/250 (13%)

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
            V  + +VF +M+ +NV+AWTA++  +V   D+  A  LF                  + 
Sbjct: 9   FVADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLF-----------------DLA 51

Query: 265 PTCSSLIG---LSGGKQIHGFAIRKEL-----NHDVSLCNALIDMYSKCGSLDCARRVFE 316
           P C  ++    +SG  ++      +EL     + DV   N ++  Y+  G ++   +VFE
Sbjct: 52  PQCDVVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFE 111

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLSACGRSGLI 375
           +    ++  +W+ ++ GY  +G   EA+  + +M+  G   P+  T+V VLSAC R G +
Sbjct: 112 EMP-ARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDL 170

Query: 376 NEG--LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
             G  + +Y   I     K    +   ++DM  + G +++ALD    + V+   + W  +
Sbjct: 171 EIGKWVHVYADSIGY---KGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIIT-WNTI 226

Query: 434 VSASVMHGNS 443
           +++  MH ++
Sbjct: 227 INSLAMHXHA 236



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHR--SLKLTKQSHSQILSLGHISNPFVSTKLITAYALC 68
            +V   +YT   V     +SA  R   L++ K  H    S+G+  N FV   LI  YA C
Sbjct: 148 GVVVPNDYTVVAV-----LSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKC 202

Query: 69  GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           G   ++  VF+ +  KD+  +N++IN    +    +AL LF  M  +   PD  T   I
Sbjct: 203 GVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGI 261


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 170/518 (32%), Positives = 275/518 (53%), Gaps = 39/518 (7%)

Query: 3   LSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTK--QSHSQILSLGHISNPFVSTK 60
              A   F L+    +   +V     +S+  R L L +  + H ++++ G + + F+S+ 
Sbjct: 188 FKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA 247

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L+  Y  CG    +  +F  +  K V  +NS+I+GY         ++LF  MY   V P 
Sbjct: 248 LVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPT 307

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
             TL+++  +      L  G  +HG +I+     DV + +SLM +Y KCGK         
Sbjct: 308 LTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGK--------- 358

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
                                    V  + ++F  + +  V +W  MI+GYV  G L EA
Sbjct: 359 -------------------------VELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEA 393

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L LF EM+ K  +E + ++  SVL  CS L  L  GK+IH   I K+L+++  +  AL+D
Sbjct: 394 LGLFSEMR-KSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLD 452

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           MY+KCG++D A  VF+     +D ++W+S+++ YG HG  + A+ L+ +M+    KPD +
Sbjct: 453 MYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRV 511

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
             + +LSACG +GL++EG   +N +IN Y I P  E  +C++D+LGRAG+L  A + ++ 
Sbjct: 512 AFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571

Query: 421 MP-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            P +     +   L SA  +H N ++     ++LI  +P++ S Y+ LSN+YAS+ +WD 
Sbjct: 572 NPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDE 631

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           V  +R+ MK+ GLKK+PGCSWI I+ K   F V D +H
Sbjct: 632 VRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDNSH 669



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 122/419 (29%), Positives = 211/419 (50%), Gaps = 40/419 (9%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK- 84
            L+     +SLK  K  H ++++LG  ++ F+   LI  Y  C     ++ VF+++++  
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPC 68

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNM-YYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           ++ L+N L+ GY KN+ + EALELF  + +Y  + PD +T  ++ K  G +    +G +I
Sbjct: 69  EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMI 128

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H   IK G ++D+++ +SL+ MY KC  F + + LF+EMP+++V  WN  IS +  SG+F
Sbjct: 129 HTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNF 188

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
                +   F  M+R                                   EPN V++ + 
Sbjct: 189 K---DALEYFGLMRRFG--------------------------------FEPNSVTITTA 213

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
           + +C+ L+ L+ G +IH   I      D  + +AL+DMY KCG L+ A  +FE     K 
Sbjct: 214 ISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMP-KKT 272

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
            + W+S++SGYGL G     + L+ +M   G KP + T+  ++  C RS  + EG  ++ 
Sbjct: 273 VVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHG 332

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
             I   RI+P   + + ++D+  + G+++ A    K +P     S W  ++S  V  G 
Sbjct: 333 YTIRN-RIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVS-WNVMISGYVAEGK 389



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 210/427 (49%), Gaps = 41/427 (9%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           +YT  +V  F      HR + L K  H+ ++  G + +  V + L+  Y  C    ++  
Sbjct: 106 SYTYPSV--FKACGGLHRYV-LGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIW 162

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           +FN +  KDV  +N++I+ Y ++    +ALE F  M      P+  T+ T       + D
Sbjct: 163 LFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLD 222

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           LN GM IH   I  GF++D  ++++L+ MY KCG     + +F++MP++ V +WN  ISG
Sbjct: 223 LNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISG 282

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +   GD   ++   ++F +M    V                                +P 
Sbjct: 283 YGLKGD---IISCIQLFKRMYNEGV--------------------------------KPT 307

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
             +L S++  CS    L  GK +HG+ IR  +  DV + ++L+D+Y KCG ++ A ++F+
Sbjct: 308 LTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFK 367

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
               +K  ++W+ ++SGY   GK  EA+ L+++M     + D IT   VL+AC +   + 
Sbjct: 368 LIPKSK-VVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALE 426

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +G EI+N +I   ++     +   ++DM  + G +D A    K +P     S W ++++A
Sbjct: 427 KGKEIHNLIIEK-KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVS-WTSMITA 484

Query: 437 SVMHGNS 443
              HG++
Sbjct: 485 YGSHGHA 491



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 5/218 (2%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           L+ +L  C +   L  GK IH   +   L +D+ LC  LI+ Y  C   D A+ VF++  
Sbjct: 6   LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNME 65

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEG 378
              +   W+ +++GY  +    EA+ L+ K++     KPD  T   V  ACG       G
Sbjct: 66  NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLG 125

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
             I+  +I T  +     + + +V M G+    ++A+     MP E   + W  ++S   
Sbjct: 126 KMIHTCLIKTGLMMDIV-VGSSLVGMYGKCNAFEKAIWLFNEMP-EKDVACWNTVISCYY 183

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
             GN +   L Y  L++     P N V+++   +S  R
Sbjct: 184 QSGNFK-DALEYFGLMRRFGFEP-NSVTITTAISSCAR 219


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/488 (34%), Positives = 270/488 (55%), Gaps = 5/488 (1%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N   S  +I  +   G   ++  +FN ++ KD+  +++LI+ Y +N  + EAL LF  M 
Sbjct: 222 NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMN 281

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
            + +  D+  + ++      +  +  G L+HGL +K+G    V L N+L+ MY  C +  
Sbjct: 282 ANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVV 341

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
               LF E    +  SWN  ISG+   G+   + ++R +FD M  ++  +W+AMI+GY Q
Sbjct: 342 TAQKLFSESCCLDQISWNSMISGYVKCGE---IEKARALFDSMPDKDNVSWSAMISGYAQ 398

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
                E LVLF EMQ+ +  +P++  LVSV+  C+ L  L  GK IH +  +  L  ++ 
Sbjct: 399 QDRFTETLVLFQEMQI-EGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINII 457

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L   LI+MY K G ++ A  VF+     K   TW++++ G  ++G   +++  +++M   
Sbjct: 458 LGTTLINMYMKLGCVEDALEVFKGLE-EKGVSTWNALILGLAMNGLVDKSLKTFSEMKEH 516

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G  P+ IT V VL AC   GL++EG   +NS+I  ++I P  +   C+VD+LGRAG L  
Sbjct: 517 GVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKE 576

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A + I++MP+ P  S WGAL+ A   +G++E  +   + L++L P++    V LSN+YAS
Sbjct: 577 AEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYAS 636

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
              W  V E+R MM+  G+ K+PGCS I  HG+ H F   DK HP +  I  MLD++   
Sbjct: 637 KGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKK 696

Query: 534 MRGAAASP 541
           ++    +P
Sbjct: 697 LKLEGYAP 704



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 240/481 (49%), Gaps = 71/481 (14%)

Query: 27  LQVSATH----RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCG--QPTQSQLVFNS 80
           L +  TH    +++K   Q  SQ++  G   + F +++L+            QS  +F+ 
Sbjct: 26  LPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSH 85

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI-SKLSGEIKDLNV 139
           I++ + ++ N+++ GY++ +   +A+ ++  M  SNV+ D++T   +    S  + + + 
Sbjct: 86  IENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFD- 144

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  I    +K+GF  DV + N+L++MY  CG  S+   +FD     ++ SWN  ++G+  
Sbjct: 145 GKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVL 204

Query: 200 SGDF-------------------SLVV---------RSRRVFDQMKRRNVYAWTAMINGY 231
            G+                    S++V          + ++F++MK++++ +W+A+I+ Y
Sbjct: 205 VGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCY 264

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            QN   +EAL+LF EM   + I  ++V ++SVL  CS L+ +  GK +HG  ++  +   
Sbjct: 265 EQNEMYEEALILFKEMN-ANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETY 323

Query: 292 VSLCNALIDMYS-------------------------------KCGSLDCARRVFEDSSF 320
           V+L NALI MYS                               KCG ++ AR +F DS  
Sbjct: 324 VNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALF-DSMP 382

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           +KD ++WS+++SGY    +  E ++L+ +M   G+KPD   +V V+SAC     +++G  
Sbjct: 383 DKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKW 442

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           I+ + I    +K    +   +++M  + G ++ AL+  K +  E   S W AL+    M+
Sbjct: 443 IH-AYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLE-EKGVSTWNALILGLAMN 500

Query: 441 G 441
           G
Sbjct: 501 G 501



 Score = 39.7 bits (91), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 30  SATH-RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYL 88
           + TH  +L   K  H+ I   G   N  + T LI  Y   G    +  VF  ++ K V  
Sbjct: 430 ACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVST 489

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI 127
           +N+LI G   N   +++L+ FS M    V+P++ T   +
Sbjct: 490 WNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAV 528


>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
          Length = 530

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/480 (33%), Positives = 261/480 (54%), Gaps = 9/480 (1%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           + T L++AYA  G P  ++ +F+ +  + +    ++   +V +    +A+ +F +M    
Sbjct: 47  LPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADG 106

Query: 117 VSPDDFTLA-TISKLSGE---IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
           V PD+  +A  +    G        N G +IH L +  G V DV ++  L+ +Y + G+ 
Sbjct: 107 VFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGEL 166

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                +FD+MP R+  +WN  +  +A  G    V  +  +F  M RR+V +W  ++ GY 
Sbjct: 167 PVSRRVFDDMPSRSTITWNAMLHQYARHGK---VDTAYEMFLAMPRRDVVSWNTVLAGYC 223

Query: 233 QNGDLDEALVLFLEMQLKDR--IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
             G   EAL LF +M       + PN  ++ ++L  C+    L  G  +H +  R  +N 
Sbjct: 224 VAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMND 283

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           D  L   LIDMY KCGS+D A +VFE +   KD  +W++++ G  +HG+  +A+ +++ M
Sbjct: 284 DGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMM 343

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G  PD +T+VGVL+AC   GL++EGL  + S+   +RI P  E   C++D+LGR G+
Sbjct: 344 QDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGR 403

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           L  A   I+TMP++P+  IWGA +SA  +HGN E+  +A + L +L+P++P   V LS++
Sbjct: 404 LQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSM 463

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YA ++ W  +A  R  M    +KK+PGCS I + G+ H F      HP    I  +L D+
Sbjct: 464 YAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDV 523


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/511 (32%), Positives = 281/511 (54%), Gaps = 40/511 (7%)

Query: 31  ATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYN 90
           A+  +L    Q H+  +     ++ +V+  LI  YA C   T ++ VF+     DV L+N
Sbjct: 361 ASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFN 420

Query: 91  SLINGYVK---NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
           ++I GY +       +EAL +F +M +  + P   T  ++ + S  +  L +   IHGL 
Sbjct: 421 AMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLM 480

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
            K G  +D+   ++L+ +Y  C     CL                               
Sbjct: 481 FKYGLNLDIFAGSALIDVYSNC----YCLK------------------------------ 506

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            SR VFD+MK +++  W +M  GYVQ  + +EAL LFLE+QL  R  P++ +  +++   
Sbjct: 507 DSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQL-SRERPDEFTFANMVTAA 565

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
            +L  +  G++ H   +++ L  +  + NAL+DMY+KCGS + A + F DS+ ++D + W
Sbjct: 566 GNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAF-DSAASRDVVCW 624

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +S++S Y  HG+G +A+ +  KM+  G +P+ IT VGVLSAC  +GL+ +GL+ +  ++ 
Sbjct: 625 NSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR 684

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            + I+P TE   C+V +LGRAG+L++A + I+ MP +P+  +W +L+S     GN E+ +
Sbjct: 685 -FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAE 743

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
            A +  I  +P++  ++  LSN+YAS   W    ++R  MK  G+ K PG SWI I+ + 
Sbjct: 744 HAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEV 803

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
           H F   DK+H  +  IYE+LDDL++ +RG +
Sbjct: 804 HIFLSKDKSHCKANQIYEVLDDLLVQIRGVS 834



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 215/463 (46%), Gaps = 48/463 (10%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q  S ++  G   + +V T LI  Y   G    ++LVF+++  K    + ++I+G VK  
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
               +L+LF  +   NV PD + L+T+      +  L  G  IH   ++ G  +D  L N
Sbjct: 229 RSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMN 288

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
            L+  YVKCG+                                  V+ + ++F+ M  +N
Sbjct: 289 VLIDSYVKCGR----------------------------------VIAAHKLFNGMPNKN 314

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
           + +WT +++GY QN    EA+ LF  M  K  ++P+  +  S+L +C+SL  L  G Q+H
Sbjct: 315 IISWTTLLSGYKQNALHKEAMELFTSMS-KFGLKPDMYACSSILTSCASLHALGFGTQVH 373

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY---GLH 337
            + I+  L +D  + N+LIDMY+KC  L  AR+VF D     D + +++++ GY   G  
Sbjct: 374 AYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVF-DIFAAADVVLFNAMIEGYSRLGTQ 432

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL-EIYNSVINTYRIKPTTE 396
            + HEA+ ++  M     +P ++T V +L A   + L + GL +  + ++  Y +     
Sbjct: 433 WELHEALNIFRDMRFRLIRPSLLTFVSLLRAS--ASLTSLGLSKQIHGLMFKYGLNLDIF 490

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
             + ++D+      L  +      M V+    IW ++ +  V    +E + L     +QL
Sbjct: 491 AGSALIDVYSNCYCLKDSRLVFDEMKVK-DLVIWNSMFAGYVQQSENE-EALNLFLELQL 548

Query: 457 EPENPSNYVSLSNLYASSRRWDAV---AELRTMMKDRGLKKSP 496
             E P  + + +N+  ++    +V    E    +  RGL+ +P
Sbjct: 549 SRERPDEF-TFANMVTAAGNLASVQLGQEFHCQLLKRGLECNP 590



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 144/316 (45%), Gaps = 43/316 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+ SA+  SL L+KQ H  +   G   + F  + LI  Y+ C     S+LVF+ +
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM 515

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KD+ ++NS+  GYV+   + EAL LF  +  S   PD+FT A +   +G +  + +G 
Sbjct: 516 KVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQ 575

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
             H   +K G   +  + N+L+ MY KCG   +    FD    R+V  WN          
Sbjct: 576 EFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWN---------- 625

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   ++I+ Y  +G+  +AL + LE  + + IEPN ++ V
Sbjct: 626 ------------------------SVISSYANHGEGKKALQM-LEKMMSEGIEPNYITFV 660

Query: 262 SVLPTCS--SLI--GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
            VL  CS   L+  GL   + +  F I  E  H V     ++ +  + G L+ AR + E 
Sbjct: 661 GVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYV----CMVSLLGRAGRLNKARELIEK 716

Query: 318 SSFNKDAITWSSIVSG 333
                 AI W S++SG
Sbjct: 717 MPTKPAAIVWRSLLSG 732



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 180/394 (45%), Gaps = 42/394 (10%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
             LQ+ A+   L      H QI+  G   + ++S  LI  Y+  G    ++ VF  +  +
Sbjct: 49  RLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPER 108

Query: 85  DVYLYNSLINGYVKNHG-HNEALELFSNMYYSNV-SPDDFTLATISKLSGEIKDLNVGML 142
           ++  ++++++    +HG + E+L +F   + +   SP+++ L++  +    +      M+
Sbjct: 109 NLVSWSTMVSA-CNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMV 167

Query: 143 --IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             +    +K GF  DV +   L+  Y+K G       +FD +P+++  +W          
Sbjct: 168 FQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTW---------- 217

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                   T MI+G V+ G    +L LF ++ ++D + P+   L
Sbjct: 218 ------------------------TTMISGCVKMGRSYVSLQLFYQL-MEDNVVPDGYIL 252

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            +VL  CS L  L GGKQIH   +R  L  D SL N LID Y KCG +  A ++F     
Sbjct: 253 STVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP- 311

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           NK+ I+W++++SGY  +    EA+ L+  M   G KPD+     +L++C     +  G +
Sbjct: 312 NKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQ 371

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
           ++   I    +   + +   ++DM  +   L  A
Sbjct: 372 VHAYTIKA-NLGNDSYVTNSLIDMYAKCDCLTDA 404



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 138/297 (46%), Gaps = 39/297 (13%)

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           ++HG  I  G  +D  L+N L+++Y + G                               
Sbjct: 65  VVHGQIIVWGLELDTYLSNILINLYSRAGG------------------------------ 94

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
               +V +R+VF++M  RN+ +W+ M++    +G  +E+LV+FLE     +  PN+  L 
Sbjct: 95  ----MVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILS 150

Query: 262 SVLPTCSSLIGLSGGK--QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           S +  CS L G       Q+  F ++   + DV +   LID Y K G++D AR VF D+ 
Sbjct: 151 SFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVF-DAL 209

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             K  +TW++++SG    G+ + ++ L+ +++     PD   +  VLSAC     +  G 
Sbjct: 210 PEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGK 269

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +I+  ++  Y ++    +   ++D   + G++  A      MP +   S W  L+S 
Sbjct: 270 QIHAHILR-YGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIIS-WTTLLSG 324



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 15/203 (7%)

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HG  I   L  D  L N LI++YS+ G +  AR+VFE     ++ ++WS++VS    HG
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMP-ERNLVSWSTMVSACNHHG 124

Query: 339 KGHEAVLLYNKMV-CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE- 396
              E+++++ +        P+   +   + AC  SGL   G  +    + ++ +K   + 
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQAC--SGLDGRGRWMVFQ-LQSFLVKSGFDR 181

Query: 397 ---ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
              +   ++D   + G +D A      +P E S   W  ++S  V  G S    ++ +  
Sbjct: 182 DVYVGTLLIDFYLKDGNIDYARLVFDALP-EKSTVTWTTMISGCVKMGRSY---VSLQLF 237

Query: 454 IQLEPEN--PSNYVSLSNLYASS 474
            QL  +N  P  Y+  + L A S
Sbjct: 238 YQLMEDNVVPDGYILSTVLSACS 260


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 164/452 (36%), Positives = 246/452 (54%), Gaps = 41/452 (9%)

Query: 87  YLYNSLINGYVKNHGH-----NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           +L+N+LI  +V+         +  + +F  M +  V PD  T   + +       L++G 
Sbjct: 25  FLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGR 84

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   ++ G  +D  +  SL+SMY                               +SSG
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMY-------------------------------SSSG 113

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL--KDRIEPNKVS 259
              LV  +R +F  M  RNV +W+ MINGYV+ G   EAL LF EMQ+   + + PN+ +
Sbjct: 114 ---LVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFT 170

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +  VL  C  L  L  GK  H +  +  +  DV L  ALIDMY+KCGS++ A  VF +  
Sbjct: 171 MSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLG 230

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            NKD + WS+++SG  +HG   E V L++KM+  G +P+ +T + V  AC   GL++EG 
Sbjct: 231 PNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGK 290

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
           +    +   Y I PT +   C+VD+ GRAG++  A + +K+MP+EP   +WGAL+S S M
Sbjct: 291 DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRM 350

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           HG+ E  +LA K LI+LEP N   YV LSN+YA   RW+ V  +R +M+  G+KK PGCS
Sbjct: 351 HGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCS 410

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
            I + G  H F V D +HP +  I+ ML++++
Sbjct: 411 LIEVGGVLHEFFVGDDSHPETRQIHMMLEEIL 442



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 151/342 (44%), Gaps = 50/342 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    LQ  A+   L L +  H+QIL  G   +PFV T LI+ Y+  G    ++ +F  +
Sbjct: 66  TFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVM 125

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYY---SNVSPDDFTLATISKLSGEIKDLN 138
             ++V  ++ +INGYV+   + EAL LF  M     ++V P++FT++ +    G +  L 
Sbjct: 126 PERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALE 185

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM-PQRNVGSWNVRISGH 197
            G   H    K G  VDV+L  +L+ MY KCG   +   +F  + P ++V +W       
Sbjct: 186 HGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAW------- 238

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                                      +AMI+G   +G  +E + LF +M +   + PN 
Sbjct: 239 ---------------------------SAMISGLAMHGLAEECVGLFSKM-INQGVRPNA 270

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC------NALIDMYSKCGSLDCA 311
           V+ ++V   C     + GG    G    + +  D S+         ++D+Y + G +  A
Sbjct: 271 VTFLAVFCAC-----VHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEA 325

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
             V +      D + W +++SG  +HG      L   K++ L
Sbjct: 326 WNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIEL 367



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 23/249 (9%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI-QHKDVYLYNSLI 93
           +L+  K +H+ I   G   +  + T LI  YA CG   ++  VF+++  +KDV  ++++I
Sbjct: 183 ALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMI 242

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI------SKLSGEIKDLNVGMLIHGLS 147
           +G   +    E + LFS M    V P+  T   +        L  E KD      +  ++
Sbjct: 243 SGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDY-----LRRMT 297

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLV 206
                +  +     ++ +Y + G+  E  N+   MP + +V  W   +SG    GD    
Sbjct: 298 EDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETC 357

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             + +   +++  N  A+  + N Y + G  ++         ++D +E   +  V   P 
Sbjct: 358 ELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDV------RHVRDLMETMGIKKV---PG 408

Query: 267 CSSLIGLSG 275
           C SLI + G
Sbjct: 409 C-SLIEVGG 416


>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/492 (33%), Positives = 262/492 (53%), Gaps = 36/492 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L  SA    L+L K  H  +L  G   +  V + L+  Y  C     +  VF S   KDV
Sbjct: 255 LSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDV 314

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
            ++ ++I+G V+N   ++AL +F  M  SNV P   TLA+      ++   ++G  IHG 
Sbjct: 315 VMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGY 374

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            ++ G ++D+   NSL++MY KC K  +                                
Sbjct: 375 VLRQGIMLDIPAQNSLVTMYAKCNKLQQ-------------------------------- 402

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             S  +F++M  +++ +W A++ G+ +NG L + +  F EM+ K  + P+ +++ S+L  
Sbjct: 403 --SCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMR-KSFLRPDSITVTSLLQA 459

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C S   L  GK IH F +R  L   +    AL+DMY KCG+L+ A++ F D    +D + 
Sbjct: 460 CGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCF-DCMLQRDLVA 518

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           WS+++ GYG +GKG  A+  Y++ +  G +P+ +  + VLSAC   GLI++GL IY S+ 
Sbjct: 519 WSTLIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMT 578

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             +R+ P  E  ACVVD+L RAG++D A  F K M  EPS  + G L+ A  ++G  E+ 
Sbjct: 579 KDFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELG 638

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
            +  + + +L+P +P N+V L+N YAS  RWD V +  T M+  GLKK PG S I +HG 
Sbjct: 639 KVIARDMFELKPVDPGNFVQLANSYASMSRWDGVEKAWTQMRSLGLKKYPGWSSIEVHGT 698

Query: 507 THCFSVADKAHP 518
           T  F  +  +HP
Sbjct: 699 TFTFFASHNSHP 710



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 191/401 (47%), Gaps = 45/401 (11%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H  ++  G   + ++ + LI+ YA  G     + VF+++  ++V  + ++I  Y +    
Sbjct: 72  HQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDI 131

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           + A  +F  M  S + P   TL  +S L G I  L + + +H L I  GF  D+ L+NS+
Sbjct: 132 DIAFSMFKQMRESGIQPTSVTL--LSLLPG-ISKLPLLLCLHCLIILHGFESDLALSNSM 188

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           ++MY KCG+ ++   LF+ +  R++ SWN                               
Sbjct: 189 VNMYGKCGRIADARRLFESIGCRDIVSWN------------------------------- 217

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
              ++++ Y + G  +E L L   M+++D I+P+K +  S L   +    L  GK +HG 
Sbjct: 218 ---SLLSAYSKIGATEEILQLLQAMKIED-IKPDKQTFCSALSASAIKGDLRLGKLVHGL 273

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            ++  LN D  + +AL+ +Y +C  LD A +VF+ S+  KD + W++++SG   +    +
Sbjct: 274 MLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFK-STTEKDVVMWTAMISGLVQNDCADK 332

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--C 400
           A+ ++ +M+    KP   T+   L+AC + G  + G  I+  V+   R     +I A   
Sbjct: 333 ALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVL---RQGIMLDIPAQNS 389

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +V M  +  +L ++      M VE     W A+V+    +G
Sbjct: 390 LVTMYAKCNKLQQSCSIFNKM-VEKDLVSWNAIVAGHAKNG 429



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 184/412 (44%), Gaps = 62/412 (15%)

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           S L+  SI H     +NSL++       H++ L+ + +M  ++   D +T  ++ K    
Sbjct: 2   SGLIHESIAHGCTKSFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKAC-- 59

Query: 134 IKDLNVGMLIHGLSIKIGFVV-----DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
               N+ +  HGLS+    VV     D  + +SL+S Y K G    C++L          
Sbjct: 60  ---TNLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFG----CIHL---------- 102

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
                                R+VFD M +RNV  WT +I  Y + GD+D A  +F +M+
Sbjct: 103 --------------------GRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMR 142

Query: 249 LKDRIEPNKVSLVSVLPTCSSL---IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
            +  I+P  V+L+S+LP  S L   + L     +HGF        D++L N++++MY KC
Sbjct: 143 -ESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGF------ESDLALSNSMVNMYGKC 195

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           G +  ARR+FE S   +D ++W+S++S Y   G   E + L   M     KPD  T    
Sbjct: 196 GRIADARRLFE-SIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSA 254

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           LSA    G +  G  ++  ++    +     + + +V +  R   LD A    K+   E 
Sbjct: 255 LSASAIKGDLRLGKLVHGLMLKD-GLNIDQHVESALVVLYLRCRCLDPAYKVFKS-TTEK 312

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLSNLYASSR 475
              +W A++S  V    ++  D A     Q+   N  PS     S L A ++
Sbjct: 313 DVVMWTAMISGLV---QNDCADKALGVFYQMIESNVKPSTATLASGLAACAQ 361



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 118/256 (46%), Gaps = 8/256 (3%)

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           ++ ++++     G   + L  ++ MQ K   + +  +  S+   C++L   S G  +H  
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQ-KTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQS 74

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            +   L+HD  + ++LI  Y+K G +   R+VF D+   ++ + W++I+  Y   G    
Sbjct: 75  VVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVF-DTMLKRNVVPWTTIIGSYSREGDIDI 133

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A  ++ +M   G +P  +T++ +L   G S L          +++ +  +    +   +V
Sbjct: 134 AFSMFKQMRESGIQPTSVTLLSLLP--GISKLPLLLCLHCLIILHGF--ESDLALSNSMV 189

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           +M G+ G++  A    +++      S W +L+SA    G +E + L     +++E   P 
Sbjct: 190 NMYGKCGRIADARRLFESIGCRDIVS-WNSLLSAYSKIGATE-EILQLLQAMKIEDIKPD 247

Query: 463 NYVSLSNLYASSRRWD 478
                S L AS+ + D
Sbjct: 248 KQTFCSALSASAIKGD 263


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 168/523 (32%), Positives = 271/523 (51%), Gaps = 37/523 (7%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           + T+   L  +A    + + +  HS     G   +  V T LI+ Y+ CG    ++ +F+
Sbjct: 212 ATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFD 271

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            ++  D+  YN+LI+GY  N     ++ LF+ +    + P+  TL  +  +        +
Sbjct: 272 MMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLL 331

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
              +HG  +K GF  +  ++ ++ +++ +                               
Sbjct: 332 AQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMES------------------------- 366

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                    +R+ FD M  + + +W AMI+GY QNG  + A+ LF E  +K  + PN ++
Sbjct: 367 ---------ARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALF-EQMVKLNVRPNPIT 416

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           + S L  C+ L  LS GK +H     ++L  +V +  ALIDMY+KCGS+  ARR+F ++ 
Sbjct: 417 ISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIF-NTM 475

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            NK+ ++W+++++GYGLHG+G EA+ LY  M+     P   T + VL AC   GL+ EG 
Sbjct: 476 DNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGW 535

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP-SPSIWGALVSASV 438
           +++ S+ + Y I P  E C C+VD+LGRAGQL  A + I   P     P +WGAL+ A +
Sbjct: 536 KVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACM 595

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           +H +S++  LA + L +L+PEN   YV LSNL+ S +++   A +R   K R L K+PG 
Sbjct: 596 VHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGY 655

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           + I I  K H F   D+AHP S +IY  L+ L   M  A   P
Sbjct: 656 TLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRP 698



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 197/422 (46%), Gaps = 44/422 (10%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           + FV++ L   Y +  +   ++ VF+++   D  L+N+L+ G       +EA+E F+ M 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGL----SGSEAVESFARMV 203

Query: 114 YS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172
              +V PD  TLA++   + E+ D+ +G  +H  + K G      +   L+S+Y KCG  
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
                LFD M + ++ ++N                                  A+I+GY 
Sbjct: 264 ESARCLFDMMEKPDLVAYN----------------------------------ALISGYS 289

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
            NG +  ++ LF E+ +   + PN  +LV+++P  S        + +HGF ++     + 
Sbjct: 290 VNGMVGSSVNLFTEL-MTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANS 348

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            +  A+  ++ +   ++ AR+ F D+   K   +W++++SGY  +G    AV L+ +MV 
Sbjct: 349 PVSTAITTLHCRLNDMESARKAF-DTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVK 407

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
           L  +P+ ITI   LSAC + G ++ G  ++  +I    ++P   +   ++DM  + G + 
Sbjct: 408 LNVRPNPITISSTLSACAQLGALSLGKWLHR-IITEEDLEPNVYVMTALIDMYAKCGSIS 466

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A     TM  +   S W A+++   +HG        YK ++      P++   LS LYA
Sbjct: 467 EARRIFNTMDNKNVVS-WNAMIAGYGLHGQGAEALKLYKDMLDAH-LLPTSATFLSVLYA 524

Query: 473 SS 474
            S
Sbjct: 525 CS 526


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 166/502 (33%), Positives = 273/502 (54%), Gaps = 38/502 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+     R + L +Q HS  +  G  S+ +VS  LI  Y+  G   +++ V   ++ KDV
Sbjct: 352 LRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDV 411

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT-ISKLSGEIKDLNVGMLIHG 145
             + S+I GYV++    +AL  F  M    + PD+  LA+ IS  +G I  +  G+ IH 
Sbjct: 412 VSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAG-INAMRQGLQIHA 470

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
                G+  DV + N+L+++Y +CG+  E  +                            
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFS---------------------------- 502

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                  F++M+ ++      +++G+ Q+G  +EAL +F+ M  +  ++ N  + VS L 
Sbjct: 503 ------SFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMD-QSGVKHNVFTFVSALS 555

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
             ++L  +  GKQIH   I+   + +  + NALI +Y KCGS + A+  F + S  ++ +
Sbjct: 556 ASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEV 614

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W++I++    HG+G EA+ L+++M   G KP+ +T +GVL+AC   GL+ EGL  + S+
Sbjct: 615 SWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 674

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
            + Y I+P  +  ACV+D+ GRAGQLDRA  FI+ MP+     +W  L+SA  +H N E+
Sbjct: 675 SDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEV 734

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            + A K L++LEP + ++YV LSN YA + +W    ++R MM+DRG++K PG SWI +  
Sbjct: 735 GEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKN 794

Query: 506 KTHCFSVADKAHPCSVSIYEML 527
             H F V D+ HP +  IY  L
Sbjct: 795 VVHAFFVGDRLHPLAEQIYNFL 816



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 221/483 (45%), Gaps = 59/483 (12%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H+Q    G  S  FV   +IT Y  CG    ++ VF  + H+D   +N+LI+G+ +  GH
Sbjct: 166 HAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQC-GH 224

Query: 103 NE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
            E ALE+F  M +S +SPD  T++++      + DL  G  +H    K G   D I+  S
Sbjct: 225 GEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGS 284

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           L+ +YVKCG     L +F+                   S D               R NV
Sbjct: 285 LLDLYVKCGDVETALVIFN-------------------SSD---------------RTNV 310

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
             W  M+  + Q  DL ++  LF +MQ    I PN+ +   +L TC+    +  G+QIH 
Sbjct: 311 VLWNLMLVAFGQINDLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHS 369

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
            +++     D+ +   LIDMYSK G L+ ARRV E     KD ++W+S+++GY  H    
Sbjct: 370 LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK-EKDVVSWTSMIAGYVQHECCK 428

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV-INTYRIKPTTEICAC 400
           +A+  + +M   G  PD I +   +S C     + +GL+I+  + ++ Y       I   
Sbjct: 429 DALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGY--SGDVSIWNA 486

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +V++  R G++  A    + M ++   +  G LVS     G   + + A K  ++++   
Sbjct: 487 LVNLYARCGRIREAFSSFEEMELKDGITGNG-LVSGFAQSG---LHEEALKVFMRMDQSG 542

Query: 461 PSN--YVSLSNLYASSRRWDAVAEL--------RTMMKDRGLKKSPGCSWISIHGKTHCF 510
             +  +  +S L AS+     +AE+        R +      +   G + IS++GK   F
Sbjct: 543 VKHNVFTFVSALSASAN----LAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSF 598

Query: 511 SVA 513
             A
Sbjct: 599 EDA 601



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 141/293 (48%), Gaps = 39/293 (13%)

Query: 93  INGYVKNHGHNEALELFSN--MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           + G++ +    + L LF++    +  + P DF  A +    G  +   V   IH  ++  
Sbjct: 13  LAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACA-LRACRGNGRRWQVVPEIHAKAVTR 71

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           G     I+ N L+ +Y K G                                  LV+ +R
Sbjct: 72  GLGKYRIVGNLLIDLYSKNG----------------------------------LVLPAR 97

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           RVF+++  R+  +W AM++GY QNG  +EAL L+ +M  +  + P    L SVL +C+  
Sbjct: 98  RVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMH-RAGVVPTPYVLSSVLSSCTKA 156

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
              + G+ IH    +     ++ + NA+I +Y +CGS   A RVF D   ++D +T++++
Sbjct: 157 ELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMP-HRDTVTFNTL 215

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
           +SG+   G G  A+ ++ +M   G  PD +TI  +L+AC   G + +G ++++
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHS 268


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 169/510 (33%), Positives = 276/510 (54%), Gaps = 37/510 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           ++L   +Q H+ ++   +    +++T+LI  Y  CG    ++ V + +  ++V  + ++I
Sbjct: 55  QALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMI 114

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +GY ++  H EALELF  M  +    ++FTLAT+       + +     +H L +K  F 
Sbjct: 115 SGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFE 174

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
             + + +SL+ MY K G   E                                  +R+VF
Sbjct: 175 SHMFVGSSLLDMYGKSGNIQE----------------------------------ARKVF 200

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D +  R+  + TA+I+GY Q G  DEAL LF ++     ++ N V+  ++L + S L  L
Sbjct: 201 DMLPERDTVSCTAIISGYAQLGLDDEALDLFRQL-YSSGMQCNYVTFTTLLTSLSGLASL 259

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           + GKQ+HG  +RKEL   + L N+LIDMYSKCG L  +RRVF D+   + AI+W++++ G
Sbjct: 260 NYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVF-DNMPQRSAISWNAMLMG 318

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG HG G E V L+  M     KPD +T++ VLS C   GL++EGL+I++ ++       
Sbjct: 319 YGRHGIGQEVVQLFRTMT-EEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVI 377

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
                 CV+D+LGR+GQL +ALD I+ MP EP+P+IWG+L+ A  +H N  + ++  + L
Sbjct: 378 HIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKL 437

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           + +EP N  NYV LSN+YA++  W  V  +R +M +  + K P  SWI +    H F  +
Sbjct: 438 LDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSS 497

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           ++ HP    I   + ++ + ++ A   P L
Sbjct: 498 ERFHPRKKDINAKIKEVYVDVKAAGFVPDL 527



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 150/326 (46%), Gaps = 44/326 (13%)

Query: 15  SRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74
           +  +T ATV   L     H+S++  +Q HS ++     S+ FV + L+  Y   G   ++
Sbjct: 140 ANEFTLATV---LTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEA 196

Query: 75  QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI-SKLSGE 133
           + VF+ +  +D     ++I+GY +    +EAL+LF  +Y S +  +  T  T+ + LSG 
Sbjct: 197 RKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSG- 255

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           +  LN G  +HGL ++      ++L NSL+ MY KCGK      +FD MPQR+  SWN  
Sbjct: 256 LASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWN-- 313

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                                           AM+ GY ++G   E + LF  M   + +
Sbjct: 314 --------------------------------AMLMGYGRHGIGQEVVQLFRTM--TEEV 339

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN--ALIDMYSKCGSLDCA 311
           +P+ V+L++VL  CS    +  G  I    I KE N  + + +   +ID+  + G L  A
Sbjct: 340 KPDSVTLLAVLSGCSHGGLVDEGLDIFDL-IVKEQNAVIHIGHYGCVIDLLGRSGQLQKA 398

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLH 337
             + E   F      W S++    +H
Sbjct: 399 LDLIEHMPFEPTPAIWGSLLGACRVH 424



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 103/215 (47%), Gaps = 11/215 (5%)

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           + +  C     L  G+Q+H   ++      V L   LI +Y +CG+LD AR V  D    
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVL-DGMPE 104

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           ++ ++W++++SGY   G+  EA+ L+ +M+  G K +  T+  VL++C     I +  ++
Sbjct: 105 RNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQV 164

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           ++ V+ T   +    + + ++DM G++G +  A      +P   + S    +   + +  
Sbjct: 165 HSLVVKT-NFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGL 223

Query: 442 NSEMQDL---AYKSLIQLEPENPSNYVSLSNLYAS 473
           + E  DL    Y S +Q       NYV+ + L  S
Sbjct: 224 DDEALDLFRQLYSSGMQ------CNYVTFTTLLTS 252


>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
          Length = 505

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 147/376 (39%), Positives = 236/376 (62%), Gaps = 5/376 (1%)

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           D  +++SL+ +Y  CG  ++  ++FDEM  R+V +WNV I+G+  +GD +    +R +FD
Sbjct: 112 DAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQA---HARELFD 168

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            M  RNV +WT +I GY Q    ++A+ +F  MQ++  IE + V+L+SVL  C  L  + 
Sbjct: 169 AMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEG-IEADGVALLSVLAACGDLGAVD 227

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            G+ +H F +R+ L  ++ L N++IDMY KCG ++ A  VFE     K  +TW+++++G+
Sbjct: 228 LGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGME-EKSVVTWTTLIAGF 286

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
            LHG G +AV ++ +M      P+ +T + +LSAC   GL + G   +N +++ YRIKP 
Sbjct: 287 ALHGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPR 346

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E   C+VD+LGRAG L  A D +K MP++ + +IWGAL++A+  HG++ + + A   LI
Sbjct: 347 VEHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQALLHLI 406

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           +LEP N  NY+ LSN++A   RW  V++LR  M++RGL+  PG S I + G  H F+  D
Sbjct: 407 ELEPNNSGNYILLSNIFAEQERWGDVSKLRKAMRERGLRNVPGASSIEVDGMVHEFTSRD 466

Query: 515 KAHPCSVSIYEMLDDL 530
            +HP   +I E+L ++
Sbjct: 467 WSHPFIHTICEVLCEI 482



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 146/337 (43%), Gaps = 81/337 (24%)

Query: 50  GHI-SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK--NHGH---- 102
           GH+ S+  VS+ L+  Y  CG    ++ VF+ +  +DV  +N +I GYVK  +  H    
Sbjct: 107 GHVASDAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHAREL 166

Query: 103 -------------------------NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
                                     +A+E+F  M    +  D   L ++    G++  +
Sbjct: 167 FDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAV 226

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
           ++G  +H   ++ G   ++ L NS++ MY+KCG   + + +F+ M +++V +W   I+G 
Sbjct: 227 DLGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGF 286

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A  G   L +++  +F +M+R N                                + PN 
Sbjct: 287 ALHG---LGLQAVEMFCRMEREN--------------------------------MAPNA 311

Query: 258 VSLVSVLPTCSSLIGLSG-GK-----QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
           V+ +++L  CS  +GL+  G+      +  + I+  + H       ++D+  + G L  A
Sbjct: 312 VTFLAILSACSH-VGLTDLGRWYFNIMVSQYRIKPRVEH----YGCMVDLLGRAGCLKEA 366

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGK---GHEAVL 345
           + + ++     +A  W ++++    HG    G +A+L
Sbjct: 367 QDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQALL 403


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 170/502 (33%), Positives = 270/502 (53%), Gaps = 37/502 (7%)

Query: 30  SATHR-SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYL 88
           + TH   + L +Q HS  +  G  S+ +VS  LI  Y+  G   ++Q + + I+ KDV  
Sbjct: 354 TCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVS 413

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           + S+I GYV++    EALE F  M    + PD+  LA+       IK ++ G  IH    
Sbjct: 414 WTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVY 473

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
             G+  DV + N L+ +Y +CG   E  + F+ +  +   +WN                 
Sbjct: 474 VSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWN----------------- 516

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
                             +I+G+ Q+G  +EAL +F++M  +   + N  + VS +   +
Sbjct: 517 -----------------GLISGFAQSGLYEEALKVFMKMD-QAGAKYNVFTFVSSISASA 558

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           +L  +  GKQIH   I+     +  + NALI +Y KCGS++ A+  F + +  ++ ++W+
Sbjct: 559 NLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMT-KRNEVSWN 617

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           +I++    HG+G EA+ L+++M   G KP  +T VGVL+AC   GL+ EGL  + S+ N 
Sbjct: 618 TIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNE 677

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDL 448
           + I P  +  ACVVD+LGRAGQLDRA  F++ MP+     +W  L+SA  +H N E+ + 
Sbjct: 678 HGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEF 737

Query: 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTH 508
           A K L++LEP + ++YV LSN YA + +W +  ++R +MKDRG++K PG SWI +    H
Sbjct: 738 AAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVH 797

Query: 509 CFSVADKAHPCSVSIYEMLDDL 530
            F V D+ HP +  IY  L  L
Sbjct: 798 AFFVGDRLHPLADQIYNFLSHL 819



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 163/350 (46%), Gaps = 36/350 (10%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
            +L +  H Q+   G  S  FV   LI+ Y  C     +  VF  + + D   +N+LI+G
Sbjct: 159 FQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISG 218

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           + +    + AL +F  M  S +SPD  T+A++      + DL  G  +H   +K G  +D
Sbjct: 219 HAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLD 278

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
            I+  SL+ +YVK G   E L +FD                   SGD             
Sbjct: 279 YIMEGSLLDLYVKSGDIEEALQIFD-------------------SGD------------- 306

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
             R NV  W  M+  Y Q  DL ++  +F  M L   + PNK +   +L TC+    +  
Sbjct: 307 --RTNVVLWNLMLVAYGQIDDLAKSFDIFYRM-LAAGVRPNKFTYPCMLRTCTHTGEIGL 363

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+QIH   I+     D+ +   LIDMYSK G LD A+R+  D    KD ++W+S+++GY 
Sbjct: 364 GEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRIL-DMIEEKDVVSWTSMIAGYV 422

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
            H    EA+  + +M   G  PD I +   +SAC     +++G +I+  V
Sbjct: 423 QHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARV 472



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 214/481 (44%), Gaps = 44/481 (9%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   +    L+  KQ HS +L  G   +  +   L+  Y   G   ++  +F+
Sbjct: 244 SVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFD 303

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
           S    +V L+N ++  Y +     ++ ++F  M  + V P+ FT   + +      ++ +
Sbjct: 304 SGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGL 363

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  IH L+IK GF  D+ ++  L+ MY K G   +   + D + +++V SW         
Sbjct: 364 GEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSW--------- 414

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
                                    T+MI GYVQ+    EAL  F EMQ    I P+ + 
Sbjct: 415 -------------------------TSMIAGYVQHEFCKEALETFKEMQACG-IWPDNIG 448

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           L S +  C+ +  +  G QIH        + DVS+ N L+ +Y++CG    A   FE   
Sbjct: 449 LASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIE 508

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
            +K+ ITW+ ++SG+   G   EA+ ++ KM   G+K ++ T V  +SA      I +G 
Sbjct: 509 -HKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGK 567

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA-LDFIKTMPVEPSPSIWGALVSASV 438
           +I+  VI T      TEI   ++ + G+ G ++ A +DF +    + +   W  +++   
Sbjct: 568 QIHARVIKT-GYTSETEISNALISLYGKCGSIEDAKMDFFEM--TKRNEVSWNTIITCCS 624

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW---DAVAELRTMMKDRGLKKS 495
            HG   ++ L     ++ +   PS+   +  L A S      + +   ++M  + G+   
Sbjct: 625 QHGRG-LEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPR 683

Query: 496 P 496
           P
Sbjct: 684 P 684



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 189/407 (46%), Gaps = 38/407 (9%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R   L  + H++ +  G      +   LI  YA  G   +++ VF  +  +D   + +++
Sbjct: 56  RRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVL 115

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           +GY +N    EA+ L+  M+ S V P  + L++I     + +   +G LIH    K GF 
Sbjct: 116 SGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFF 175

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +  + N+L+S+Y++C  F     +F +M   +  ++N  ISGHA               
Sbjct: 176 SETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHA--------------- 220

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                              Q G  D AL +F EMQL   + P+ V++ S+L  CS++  L
Sbjct: 221 -------------------QCGHGDRALGIFDEMQLSG-LSPDSVTIASLLAACSAVGDL 260

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GKQ+H + ++  ++ D  +  +L+D+Y K G ++ A ++F DS    + + W+ ++  
Sbjct: 261 RKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIF-DSGDRTNVVLWNLMLVA 319

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG      ++  ++ +M+  G +P+  T   +L  C  +G I  G +I++  I     + 
Sbjct: 320 YGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKN-GFQS 378

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
              +   ++DM  + G LD+A   I  M  E     W ++++  V H
Sbjct: 379 DMYVSGVLIDMYSKYGWLDKA-QRILDMIEEKDVVSWTSMIAGYVQH 424



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
            Y   T    +  SA    +K  KQ H++++  G+ S   +S  LI+ Y  CG    +++
Sbjct: 544 KYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKM 603

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTLATI 127
            F  +  ++   +N++I      HG   EAL+LF  M    + P D T   +
Sbjct: 604 DFFEMTKRNEVSWNTIITC-CSQHGRGLEALDLFDQMKQQGLKPSDVTFVGV 654


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 169/555 (30%), Positives = 298/555 (53%), Gaps = 58/555 (10%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC-----GQPTQSQLVFNSIQHKDVYL 88
           +S+   KQ HS  + +G  S+P    ++I   A C     G    +  VF++I H  +++
Sbjct: 18  KSMYQLKQIHSHTIKMGLSSDPLFRNRVI---AFCCAHESGNMNYAHQVFDTIPHPSMFI 74

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV--GMLIHGL 146
           +N++I GY K       + ++  M  SN+ PD FT      L G  +D+ +  G  +   
Sbjct: 75  WNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPF--SLKGFTRDMALQHGKELLNH 132

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL- 205
           ++K GF  ++ +  + + M+  CG       +FD      V +WN+ +SG+     F + 
Sbjct: 133 AVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKIS 192

Query: 206 ---------------------------------------VVRSRRVFDQMKRRNVYAWTA 226
                                                  +  ++ VFD MK R+V +WTA
Sbjct: 193 KMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTA 252

Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           MI+GY++      AL LF EMQ+ + ++P++ ++VS+L  C+ L  L  G+ +     + 
Sbjct: 253 MIDGYLRMNHFIGALALFREMQMSN-VKPDEFTMVSILIACALLGALELGEWVKTCIDKN 311

Query: 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLL 346
              +D  + NAL+DMY KCG++  A++VF++  + KD  TW++++ G  ++G G EA+ +
Sbjct: 312 SNKNDSFVGNALVDMYFKCGNVRKAKKVFKEM-YQKDKFTWTTMIVGLAINGHGEEALAM 370

Query: 347 YNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406
           ++ M+     PD IT +GVL AC    ++++G   + ++   + IKPT     C+VD+LG
Sbjct: 371 FSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLG 426

Query: 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466
             G L+ AL+ I  MPV+P+  +WG+ + A  +H N ++ D+A K +++LEPEN + YV 
Sbjct: 427 CVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVL 486

Query: 467 LSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEM 526
           L N+YA+S++W+ + ++R +M +RG+KK+PGCS + ++G  + F   D++HP S  IY  
Sbjct: 487 LCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAK 546

Query: 527 LDDLILIMRGAAASP 541
           L++++  +  A  SP
Sbjct: 547 LENMMQGLIKAGYSP 561


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 170/517 (32%), Positives = 273/517 (52%), Gaps = 36/517 (6%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A   +  L +Q H  ++     S+ ++   L+  YA       +  VF+ + H+D+
Sbjct: 217 LKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDL 276

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
            L+N+LI+G      H+EA  +F  +    +  +  TLA + K +  ++  +    +H L
Sbjct: 277 ILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHAL 336

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           + KIGF+ D  + N L+  Y KC   S+ + +F+E                 SSGD    
Sbjct: 337 AEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE----------------CSSGD---- 376

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                         + A T+MI    Q    + A+ LF+EM L+  +EP+   L S+L  
Sbjct: 377 --------------IIAVTSMITALSQCDHGEGAIKLFMEM-LRKGLEPDPFVLSSLLNA 421

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+SL     GKQ+H   I+++   D    NAL+  Y+KCGS++ A   F  S   +  ++
Sbjct: 422 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFS-SLPERGVVS 480

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           WS+++ G   HG G  A+ L+ +MV  G  P+ IT+  VL AC  +GL++E    +NS+ 
Sbjct: 481 WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMK 540

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             + I  T E  +C++D+LGRAG+LD A++ + +MP + + S+WGAL+ AS +H + E+ 
Sbjct: 541 EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELG 600

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
            LA + L  LEPE    +V L+N YASS  W+ VA++R +MKD  +KK P  SW+ +  K
Sbjct: 601 KLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDK 660

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            H F V DK+HP +  IY  LD+L  +M  A   P++
Sbjct: 661 VHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNV 697



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/504 (23%), Positives = 221/504 (43%), Gaps = 78/504 (15%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI-QHKDVYLYNSLING 95
           +L  Q H+  ++ G  S+ FV+  L+  Y   G    ++ VF+     ++   +N L++ 
Sbjct: 24  QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 83

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           YVKN    +A+++F  M +S + P +F  + +       ++++ G  +H + +++G+  D
Sbjct: 84  YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD 143

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS-----GH------------- 197
           V  AN+L+ MYVK G+      +F++MP  +V SWN  IS     GH             
Sbjct: 144 VFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 203

Query: 198 -----------------ASSGDFSLVVRSRRVFDQMKRRNV----YAWTAMINGYVQNGD 236
                            A +G F L    R++   M + N     Y    +++ Y +N  
Sbjct: 204 SGLVPNVFMLSSILKACAGAGAFDL---GRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 260

Query: 237 LDEALVLFLEMQLKDRI------------------------------EPNKVSLVSVLPT 266
           LD+A+ +F  M  +D I                                N+ +L +VL +
Sbjct: 261 LDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 320

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
            +SL   S  +Q+H  A +     D  + N LID Y KC  L  A RVFE+ S + D I 
Sbjct: 321 TASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECS-SGDIIA 379

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
            +S+++       G  A+ L+ +M+  G +PD   +  +L+AC       +G +++  +I
Sbjct: 380 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 439

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
               +       A +V    + G ++ A     ++P E     W A++     HG+ +  
Sbjct: 440 KRQFMSDAFAGNA-LVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRA 497

Query: 447 DLAYKSLIQLEPENPSNYVSLSNL 470
              +  ++  E  NP N+++++++
Sbjct: 498 LELFGRMVD-EGINP-NHITMTSV 519



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 166/377 (44%), Gaps = 46/377 (12%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    V  ++F L  + K    + D  +G  +H +++  GF  DV +AN+L++MY     
Sbjct: 1   MRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMY----- 52

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM-KRRNVYAWTAMING 230
                                        G F  +  +RRVFD+    RN  +W  +++ 
Sbjct: 53  -----------------------------GGFGFMDDARRVFDEAGSERNAVSWNGLMSA 83

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
           YV+N    +A+ +F EM +   I+P +     V+  C+    +  G+Q+H   +R     
Sbjct: 84  YVKNDQCGDAIQVFGEM-VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEK 142

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           DV   NAL+DMY K G +D A  +FE    + D ++W++++SG  L+G  H A+ L  +M
Sbjct: 143 DVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRAIELLLQM 201

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G  P++  +  +L AC  +G  + G +I+  +I          I   +VDM  +   
Sbjct: 202 KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA-NADSDDYIGVGLVDMYAKNHF 260

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS-NYVSLSN 469
           LD A+     M       +W AL+S    HG     D A+     L  E    N  +L+ 
Sbjct: 261 LDDAMKVFDWMS-HRDLILWNALISG-CSHGGR--HDEAFSIFYGLRKEGLGVNRTTLAA 316

Query: 470 LYASSRRWDAVAELRTM 486
           +  S+   +A +  R +
Sbjct: 317 VLKSTASLEAASATRQV 333



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 129/322 (40%), Gaps = 46/322 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+ +A+  +   T+Q H+    +G I +  V   LI +Y  C   + +  VF   
Sbjct: 313 TLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEEC 372

Query: 82  QHKDVYLYNSLINGYVK-NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
              D+    S+I    + +HG   A++LF  M    + PD F L+++      +     G
Sbjct: 373 SSGDIIAVTSMITALSQCDHGEG-AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 431

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             +H   IK  F+ D    N+L+  Y KCG   +    F  +P+R V SW          
Sbjct: 432 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW---------- 481

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                   +AMI G  Q+G    AL LF  M + + I PN +++
Sbjct: 482 ------------------------SAMIGGLAQHGHGKRALELFGRM-VDEGINPNHITM 516

Query: 261 VSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
            SVL  C+    +   K+        F I +   H     + +ID+  + G LD A  + 
Sbjct: 517 TSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEH----YSCMIDLLGRAGKLDDAMELV 572

Query: 316 EDSSFNKDAITWSSIVSGYGLH 337
               F  +A  W +++    +H
Sbjct: 573 NSMPFQANASVWGALLGASRVH 594


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 170/512 (33%), Positives = 274/512 (53%), Gaps = 38/512 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R+L+  ++ H+ ++   ++   ++ T+L+  Y  C     ++ V + +  K+V  + ++I
Sbjct: 65  RALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMI 124

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           + Y +    +EAL +F+ M  S+  P++FT AT+         L +G  IHGL +K  + 
Sbjct: 125 SRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYD 184

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
             + + +SL+ MY K G+  E   +F+ +P+                             
Sbjct: 185 SHIFVGSSLLDMYAKAGQIEEAREIFECLPE----------------------------- 215

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                R+V + TA+I GY Q G  +EAL +F  +Q  + + PN V+  S+L   S L  L
Sbjct: 216 -----RDVVSCTAIIAGYAQLGLDEEALEMFQRLQ-SEGMRPNYVTYASLLTALSGLALL 269

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             GKQ H   +R+EL     L N+LIDMYSKCG+L  A+R+F D+   + AI+W++++ G
Sbjct: 270 DHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLF-DNMPERTAISWNAMLVG 328

Query: 334 YGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRI 391
           Y  HG G E + L+  M      KPD +T++ VLS C    + + GL IY+ ++   Y I
Sbjct: 329 YSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGI 388

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           KP TE   C+VDMLGRAG++D A +FIK MP +P+  + G+L+ A  +H + ++ +    
Sbjct: 389 KPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGH 448

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            LI++EPEN  NYV LSNLYAS+ RW+ V  +R MM  + + K PG SWI      H F 
Sbjct: 449 RLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFH 508

Query: 512 VADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
             D+ HP    +   + ++ + M+ A   P +
Sbjct: 509 ANDRTHPRREEVLAKMKEISIKMKQAGYVPDI 540



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 9/243 (3%)

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I+    NG L EAL   LEM +    E       ++L  C     L  G+++H   I+  
Sbjct: 26  ISQLCSNGRLQEAL---LEMVMLGP-EIGFHCYDALLNACLDKRALREGQRVHAHMIKTR 81

Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
                 L   L+  Y KC  L+ AR+V  D    K+ ++W++++S Y   G   EA+ ++
Sbjct: 82  YLPATYLRTRLLIFYGKCDCLEDARKVL-DEMPEKNVVSWTAMISRYSQTGHSSEALSVF 140

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            +M+    KP+  T   VL++C R+  +  G +I+  ++  +       + + ++DM  +
Sbjct: 141 AEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVK-WNYDSHIFVGSSLLDMYAK 199

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
           AGQ++ A +  + +P     S   A+++     G  E + L     +Q E   P NYV+ 
Sbjct: 200 AGQIEEAREIFECLPERDVVSC-TAIIAGYAQLGLDE-EALEMFQRLQSEGMRP-NYVTY 256

Query: 468 SNL 470
           ++L
Sbjct: 257 ASL 259


>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/492 (33%), Positives = 262/492 (53%), Gaps = 36/492 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L  SA    L+L K  H  +L  G   +  V + L+  Y  C     +  VF S   KDV
Sbjct: 255 LSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDV 314

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
            ++ ++I+G V+N   ++AL +F  M  SNV P   TLA+      ++   ++G  IHG 
Sbjct: 315 VMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGY 374

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            ++ G ++D+   NSL++MY KC K  +                                
Sbjct: 375 VLRQGIMLDIPAQNSLVTMYAKCNKLQQ-------------------------------- 402

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             S  +F++M  +++ +W A++ G+ +NG L + +  F EM+ K  + P+ +++ S+L  
Sbjct: 403 --SCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMR-KSFLRPDSITVTSLLQA 459

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C S   L  GK IH F +R  L   +    AL+DMY KCG+L+ A++ F D    +D + 
Sbjct: 460 CGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCF-DCMLQRDLVA 518

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           WS+++ GYG +GKG  A+  Y++ +  G +P+ +  + VLSAC   GLI++GL IY S+ 
Sbjct: 519 WSTLIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMT 578

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             +R+ P  E  ACVVD+L RAG++D A  F K M  EPS  + G L+ A  ++G  E+ 
Sbjct: 579 KDFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELG 638

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
            +  + + +L+P +P N+V L+N YAS  RWD V +  T M+  GLKK PG S I +HG 
Sbjct: 639 KVIARDMFELKPVDPGNFVQLANSYASMSRWDGVEKAWTQMRSLGLKKYPGWSSIEVHGT 698

Query: 507 THCFSVADKAHP 518
           T  F  +  +HP
Sbjct: 699 TFTFFASHNSHP 710



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 190/401 (47%), Gaps = 45/401 (11%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H  ++  G   + ++ + LI+ YA  G     + VF+++  ++V  + ++I  Y +    
Sbjct: 72  HQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDI 131

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           + A  +F  M  S + P   TL  +S L G I  L + + +H L I  GF  D+ L+NS+
Sbjct: 132 DIAFSMFKQMRESGIQPTSVTL--LSLLPG-ISKLPLLLCLHCLIILHGFESDLALSNSM 188

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           ++MY KCG+ ++   LF  +  R++ SWN                               
Sbjct: 189 VNMYGKCGRIADARRLFQSIDCRDIVSWN------------------------------- 217

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
              ++++ Y + G  +E L L   M+++D I+P+K +  S L   +    L  GK +HG 
Sbjct: 218 ---SLLSAYSKIGATEEILQLLQAMKIED-IKPDKQTFCSALSASAIKGDLRLGKLVHGL 273

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            ++  LN D  + +AL+ +Y +C  LD A +VF+ S+  KD + W++++SG   +    +
Sbjct: 274 MLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFK-STTEKDVVMWTAMISGLVQNDCADK 332

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--C 400
           A+ ++ +M+    KP   T+   L+AC + G  + G  I+  V+   R     +I A   
Sbjct: 333 ALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVL---RQGIMLDIPAQNS 389

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +V M  +  +L ++      M VE     W A+V+    +G
Sbjct: 390 LVTMYAKCNKLQQSCSIFNKM-VEKDLVSWNAIVAGHAKNG 429



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 183/412 (44%), Gaps = 62/412 (15%)

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           S  +  SI H     +NSL++       H++ L+ + +M  ++   D +T  ++ K    
Sbjct: 2   SGFIHESIAHGCTKSFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKAC-- 59

Query: 134 IKDLNVGMLIHGLSIKIGFVV-----DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
               N+ +  HGLS+    VV     D  + +SL+S Y K G    C++L          
Sbjct: 60  ---TNLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFG----CIHL---------- 102

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
                                R+VFD M +RNV  WT +I  Y + GD+D A  +F +M+
Sbjct: 103 --------------------GRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMR 142

Query: 249 LKDRIEPNKVSLVSVLPTCSSL---IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
            +  I+P  V+L+S+LP  S L   + L     +HGF        D++L N++++MY KC
Sbjct: 143 -ESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGF------ESDLALSNSMVNMYGKC 195

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           G +  ARR+F+ S   +D ++W+S++S Y   G   E + L   M     KPD  T    
Sbjct: 196 GRIADARRLFQ-SIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSA 254

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           LSA    G +  G  ++  ++    +     + + +V +  R   LD A    K+   E 
Sbjct: 255 LSASAIKGDLRLGKLVHGLMLKD-GLNIDQHVESALVVLYLRCRCLDPAYKVFKS-TTEK 312

Query: 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLSNLYASSR 475
              +W A++S  V    ++  D A     Q+   N  PS     S L A ++
Sbjct: 313 DVVMWTAMISGLV---QNDCADKALGVFYQMIESNVKPSTATLASGLAACAQ 361



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 118/256 (46%), Gaps = 8/256 (3%)

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           ++ ++++     G   + L  ++ MQ K   + +  +  S+   C++L   S G  +H  
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQ-KTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQS 74

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            +   L+HD  + ++LI  Y+K G +   R+VF D+   ++ + W++I+  Y   G    
Sbjct: 75  VVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVF-DTMLKRNVVPWTTIIGSYSREGDIDI 133

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A  ++ +M   G +P  +T++ +L   G S L          +++ +  +    +   +V
Sbjct: 134 AFSMFKQMRESGIQPTSVTLLSLLP--GISKLPLLLCLHCLIILHGF--ESDLALSNSMV 189

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           +M G+ G++  A    +++      S W +L+SA    G +E + L     +++E   P 
Sbjct: 190 NMYGKCGRIADARRLFQSIDCRDIVS-WNSLLSAYSKIGATE-EILQLLQAMKIEDIKPD 247

Query: 463 NYVSLSNLYASSRRWD 478
                S L AS+ + D
Sbjct: 248 KQTFCSALSASAIKGD 263


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 168/517 (32%), Positives = 271/517 (52%), Gaps = 38/517 (7%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
            + S + RS  + KQ H+  +  G IS+ FV       Y+  G   +++ +F+ +  +++
Sbjct: 115 FKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNI 174

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N+ ++  V    +++AL  F    +    P+  T             L +G  +HG 
Sbjct: 175 ATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGF 234

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            ++ GF  DV +AN L+  Y KC                 VG                  
Sbjct: 235 VLQSGFEADVSVANGLIDFYGKC---------------HQVGC----------------- 262

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             S  +F  + + N  +W +MI  YVQN + ++A ++FL  + K+ IEP    + SVL  
Sbjct: 263 --SEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRAR-KEGIEPTDFMVSSVLSA 319

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+ L  L  GK +H  A++  +  ++ + +AL+DMY KCGS++ A R F++    ++ +T
Sbjct: 320 CAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP-ERNLVT 378

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSK--PDIITIVGVLSACGRSGLINEGLEIYNS 384
           W++++ GY   G+   AV L+++M C   +  P+ +T V VLSAC R+G +N G+EI+ S
Sbjct: 379 WNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFES 438

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +   Y I+P  E  ACVVD+LGRAG +++A  FIK MP+ P+ S+WGAL+ AS M G SE
Sbjct: 439 MRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSE 498

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           +  +A  +L +L+P +  N+V LSN++A++ RW+    +R  MKD G+KK  GCSWI+  
Sbjct: 499 LGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAG 558

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
              H F   D +H  +  I  ML  L   M  A   P
Sbjct: 559 NAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIP 595



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 203/447 (45%), Gaps = 43/447 (9%)

Query: 37  KLTKQSHSQILSLGHISNP---FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           +L + +H+QI+    + NP   F+   L+  Y+   +P  +QL+ +   ++ V  + +LI
Sbjct: 23  RLGRAAHAQIIKT--LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALI 80

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            G V+N     AL  FSNM   ++ P+DFT     K SG ++   VG  +H L++K G +
Sbjct: 81  AGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQI 140

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV +  S   MY K G                                  L   +R++F
Sbjct: 141 SDVFVGCSAFDMYSKAG----------------------------------LTEEARKMF 166

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D+M  RN+  W A ++  V  G  D+AL  F+E +  +  EPN ++  + L  C+    L
Sbjct: 167 DEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFR-HEGWEPNLITFCAFLNACAGASYL 225

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             G+Q+HGF ++     DVS+ N LID Y KC  + C+  +F   S   D ++W S++  
Sbjct: 226 RLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPND-VSWCSMIVS 284

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y  + +  +A L++ +    G +P    +  VLSAC    ++  G  ++   +    +  
Sbjct: 285 YVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVG- 343

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
              + + +VDM G+ G ++ A      MP E +   W A++      G ++M    +  +
Sbjct: 344 NIFVGSALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNAMIGGYAHQGQADMAVTLFDEM 402

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAV 480
                    NYV+   + ++  R  +V
Sbjct: 403 TCGSHRVAPNYVTFVCVLSACSRAGSV 429



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 159/345 (46%), Gaps = 18/345 (5%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T   FL   A    L+L +Q H  +L  G  ++  V+  LI  Y  C Q   S+++F+ I
Sbjct: 211 TFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGI 270

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
              +   + S+I  YV+N    +A  +F       + P DF ++++      +  L VG 
Sbjct: 271 SKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGK 330

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H L++K   V ++ + ++L+ MY KCG   +    FDEMP+RN+ +WN  I G+A  G
Sbjct: 331 SVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQG 390

Query: 202 DFSLVVRSRRVFDQMK------RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
              + V    +FD+M         N   +  +++   + G ++  + +F  M+ +  IEP
Sbjct: 391 QADMAV---TLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEP 447

Query: 256 NKVSLVSVLPTCSSLIGLSGG-KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
                  V+     L+G +G  +Q + F  +  +   VS+  AL+      G  +   +V
Sbjct: 448 GAEHYACVV----DLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELG-KV 502

Query: 315 FEDSSFNKDAITWSSIV---SGYGLHGKGHEAVLLYNKMVCLGSK 356
             D+ F  D +   + V   + +   G+  EA L+  +M  +G K
Sbjct: 503 AADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIK 547



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 2/127 (1%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T   V   L   A    L++ K  H+  +    + N FV + L+  Y  CG    ++  F
Sbjct: 309 TDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAF 368

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN--VSPDDFTLATISKLSGEIKD 136
           + +  +++  +N++I GY      + A+ LF  M   +  V+P+  T   +         
Sbjct: 369 DEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGS 428

Query: 137 LNVGMLI 143
           +NVGM I
Sbjct: 429 VNVGMEI 435


>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
 gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 166/441 (37%), Positives = 256/441 (58%), Gaps = 10/441 (2%)

Query: 66  ALCGQPTQ---SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
           ++CG   +   +  +F   Q+  + L+N++I GY  N    E+  LFS+M    + PD++
Sbjct: 49  SICGSLNKMAYANRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEY 108

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           TLA + K    +  L +G  +H   + +GF     +   ++ +Y  CG   +   +FDEM
Sbjct: 109 TLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEM 168

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
            QR+V  WN+ I G    GD  + +    +F QM++R+V +W  MI+   Q+    EAL 
Sbjct: 169 YQRDVIVWNLMIHGFCKRGDVDMGLC---LFRQMRKRSVVSWNIMISCLAQSRRDSEALG 225

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD-VSLCNALIDM 301
           LF +M L    +P++ ++V+VLP C+ L  +  GK IH +A    L  D V++ NAL+D 
Sbjct: 226 LFHDM-LDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDF 284

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y+K G  + ARRVF D    K+ I+W++++SG  L+G G   V L  +M+  G +P+  T
Sbjct: 285 YNKSGMFETARRVF-DEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDAT 343

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
            VGVLS C  +GL   G E+  S++  ++I+P  E   C+VD+LGR+G +  A D I+ M
Sbjct: 344 FVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIM 403

Query: 422 PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           P   P+ ++WG+L+SA   HG+ E+  LA K LI LEP N  NYV LSN+YA   RWD V
Sbjct: 404 PGGAPNAALWGSLLSACRTHGDVELAHLAVKELIDLEPWNSGNYVLLSNMYAEEERWDKV 463

Query: 481 AELRTMMKDRGLKKSPGCSWI 501
           A +R MM+++ +KK+PG S I
Sbjct: 464 ANVRGMMREKNVKKTPGQSVI 484



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 148/373 (39%), Gaps = 83/373 (22%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  ++   L+L K  H ++L +G      +   +I  Y+ CG    ++ VF+ +
Sbjct: 109 TLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEM 168

Query: 82  QHKDVYLYNSLINGYVK-------------------------------NHGHNEALELFS 110
             +DV ++N +I+G+ K                               +   +EAL LF 
Sbjct: 169 YQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFH 228

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD-VILANSLMSMYVKC 169
           +M      PD+ T+ T+  +   +  ++VG  IH  +   G   D V + N+L+  Y K 
Sbjct: 229 DMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKS 288

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
           G F     +FDEMP++NV SWN  ISG A +G                            
Sbjct: 289 GMFETARRVFDEMPRKNVISWNTLISGLALNG---------------------------- 320

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAI 284
               NG+L    V  LE  + + + PN  + V VL  C+       G++     +    I
Sbjct: 321 ----NGELG---VELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLASMVEHHQI 373

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF----NKDAITWSSIVSGYGLHGKG 340
             +L H       ++D+  + G   C R  ++          +A  W S++S    HG  
Sbjct: 374 EPKLEH----YGCMVDLLGRSG---CVREAYDLIRIMPGGAPNAALWGSLLSACRTHGDV 426

Query: 341 HEAVLLYNKMVCL 353
             A L   +++ L
Sbjct: 427 ELAHLAVKELIDL 439


>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 180/535 (33%), Positives = 288/535 (53%), Gaps = 12/535 (2%)

Query: 4   SSARNTFALVTS--RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTK 60
           SS    F L +S  R   S   Q FL +      L   KQ H  I+  G +S   ++   
Sbjct: 111 SSKNECFGLYSSMIRYRVSPDRQTFLHLMKASSFLSEVKQIHCHIIVSGCLSLGNYLWNS 170

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           L+  Y   G    ++ VF  +   DV  +N +I GY K     EALEL+  M    + PD
Sbjct: 171 LVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGIEPD 230

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV--DVILANSLMSMYVKCGKFSECLNL 178
           ++TL  +    G + D+ +G  +HG   + G V   ++IL N+L+ MY KC +       
Sbjct: 231 EYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILRNALLDMYFKCKESGLAKRA 290

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG-DL 237
           FD + ++++ SWN  + G    GD      ++ VFDQM +R++ +W +++  Y + G D 
Sbjct: 291 FDALKKKDMRSWNTMVVGFVRLGDME---AAQAVFDQMPQRDLVSWNSLLFCYSKKGCDQ 347

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
                LF EM + ++++P++V++VS++   ++   LS G+ +HG  IR +L  D  L +A
Sbjct: 348 RAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLMIRLQLEGDAFLSSA 407

Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
           LIDMY KCG ++ A  VF+ ++  KD   W+S+++G+  HG G +A+ L+ +M      P
Sbjct: 408 LIDMYCKCGLIERAFMVFKTAT-EKDVPLWTSMITGFAFHGYGQQALQLFKRMQEEDVTP 466

Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           + +T++ VL+AC  SGL+ EGL ++  +   +   P TE    +VD+L RAG+L+ A D 
Sbjct: 467 NKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGFHPETEHYGSLVDLLCRAGRLEEAKDI 526

Query: 418 IKT-MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
           ++  MP+ PS S+WG+++SA     + E  +LA   L++LEPE    YV LSN+YA+  R
Sbjct: 527 VQNKMPMRPSQSMWGSILSACREGEDIETAELALSELLKLEPEKEGGYVLLSNIYATVGR 586

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA-HPCSVSIYEMLDDL 530
           W    + R  M+ RG+KK+ G S +      H F  A+K  HP    I  +L  L
Sbjct: 587 WGYSDKTREAMESRGVKKTAGYSSVVGVEGVHSFVAAEKQNHPRWTEIKRILQHL 641


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 166/520 (31%), Positives = 270/520 (51%), Gaps = 36/520 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L+     R L L K  ++ +L  G +    V   LI  YA CG    ++ VFNS+
Sbjct: 309 TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSM 368

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KD   +NS+I+GY+++    EA++LF  M       D  T   +  +S  + DL  G 
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGK 428

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   IK G  +D+ ++N+L+ MY KCG+  + L +F  M                 +G
Sbjct: 429 GLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSM----------------GTG 472

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D                     W  +I+  V+ GD    L +  +M+ K  + P+  + +
Sbjct: 473 D------------------TVTWNTVISACVRFGDFATGLQVTTQMR-KSEVVPDMATFL 513

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
             LP C+SL     GK+IH   +R     ++ + NALI+MYSKCG L+ + RVFE  S  
Sbjct: 514 VTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMS-R 572

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D +TW+ ++  YG++G+G +A+  +  M   G  PD +  + ++ AC  SGL++EGL  
Sbjct: 573 RDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLAC 632

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  +   Y+I P  E  ACVVD+L R+ ++ +A +FI+ MP++P  SIW +++ A    G
Sbjct: 633 FEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSG 692

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           + E  +   + +I+L P++P   +  SN YA+ R+WD V+ +R  +KD+ + K+PG SWI
Sbjct: 693 DMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWI 752

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            +    H FS  D + P S +IY+ L+ L  +M      P
Sbjct: 753 EVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIP 792



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 222/440 (50%), Gaps = 41/440 (9%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ-HKDVYLYNSLINGYVK 98
           ++ H+ ++SLG  S+ F S KLI  Y+   +P  S  VF  +   K+VYL+NS+I  + K
Sbjct: 24  RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSK 83

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
           N    EALE +  +  S VSPD +T  ++ K    + D  +G L++   + +GF  D+ +
Sbjct: 84  NGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFV 143

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            N+L+ MY + G  +    +FDEMP R++ SWN  ISG++S G +               
Sbjct: 144 GNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY--------------- 188

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
                              +EAL ++ E++    I P+  ++ SVLP   +L+ +  G+ 
Sbjct: 189 -------------------EEALEIYHELK-NSWIVPDSFTVSSVLPAFGNLLVVKQGQG 228

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HGFA++  +N  V + N L+ MY K      ARRVF++    +D++++++++ GY    
Sbjct: 229 LHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDV-RDSVSYNTMICGYLKLE 287

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              E+V ++ + +    KPD++T+  VL ACG    ++    IYN ++    +  +T + 
Sbjct: 288 MVEESVRMFLENLD-QFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLEST-VR 345

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
             ++D+  + G +  A D   +M  + + S W +++S  +  G+  M+ +    ++ +  
Sbjct: 346 NILIDVYAKCGDMITARDVFNSMECKDTVS-WNSIISGYIQSGDL-MEAMKLFKMMMIME 403

Query: 459 ENPSNYVSLSNLYASSRRWD 478
           E   +   L  +  S+R  D
Sbjct: 404 EQADHITYLMLISVSTRLAD 423



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 206/400 (51%), Gaps = 39/400 (9%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           + QIL +G  S+ FV   L+  Y+  G  T+++ VF+ +  +D+  +NSLI+GY  +  +
Sbjct: 129 YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EALE++  +  S + PD FT++++    G +  +  G  +HG ++K G    V++ N L
Sbjct: 189 EEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGL 248

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           ++MY+K  + ++   +FDEM  R+  S+N                               
Sbjct: 249 VAMYLKFRRPTDARRVFDEMDVRDSVSYN------------------------------- 277

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
               MI GY++   ++E++ +FLE    D+ +P+ +++ SVL  C  L  LS  K I+ +
Sbjct: 278 ---TMICGYLKLEMVEESVRMFLENL--DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNY 332

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            ++     + ++ N LID+Y+KCG +  AR VF +S   KD ++W+SI+SGY   G   E
Sbjct: 333 MLKAGFVLESTVRNILIDVYAKCGDMITARDVF-NSMECKDTVSWNSIISGYIQSGDLME 391

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ L+  M+ +  + D IT + ++S   R   +  G  ++++ I +  I     +   ++
Sbjct: 392 AMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS-GICIDLSVSNALI 450

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           DM  + G++  +L    +M    + + W  ++SA V  G+
Sbjct: 451 DMYAKCGEVGDSLKIFSSMGTGDTVT-WNTVISACVRFGD 489



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 13/202 (6%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT    L + A+  + +L K+ H  +L  G+ S   +   LI  Y+ CG    S  VF  
Sbjct: 510 ATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFER 569

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
           +  +DV  +  +I  Y       +ALE F++M  S + PD      I          + G
Sbjct: 570 MSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACS-----HSG 624

Query: 141 MLIHGLS----IKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVR 193
           ++  GL+    +K  + +D ++ +   ++ +  +  K S+       MP +   S W   
Sbjct: 625 LVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASV 684

Query: 194 ISGHASSGDFSLVVR-SRRVFD 214
           +    +SGD     R SRR+ +
Sbjct: 685 LRACRTSGDMETAERVSRRIIE 706


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 185/546 (33%), Positives = 297/546 (54%), Gaps = 31/546 (5%)

Query: 2   ILSSARNTFALVTSRNYTSAT--VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           +++ AR  F ++  RN  S T  V+ ++Q      + KL  +   +        N    T
Sbjct: 98  MVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRR--------NVVSWT 149

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            +I       +   ++ +F+ I  KDV +  ++I GY +    +EA ELF  M   NV  
Sbjct: 150 VMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNV-- 207

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV---DVILANSLMSMYVKCGKFSECL 176
             FT  T+  +SG  K+  V      ++ K+  V+   + +   +++  Y + G+  E  
Sbjct: 208 --FTWTTM--VSGYAKNGRVD-----VARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAF 258

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
            LF+ MP + + + N  I     +G+     R+R +F+ MK R+   W AMI  + + G 
Sbjct: 259 ELFEAMPVKWIVACNEMILQFGLAGEMH---RARMMFEGMKERDEGTWNAMIKVFERKGL 315

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
             EAL LF  MQ ++ +  N  S++SVL  C+SL  L  G+Q+H   +R E + D+ + +
Sbjct: 316 DLEALGLFARMQ-REGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVAS 374

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
            LI MY KCG L  A+ +F    F KD + W+S+++GY  HG G EA+ +++ M   G +
Sbjct: 375 VLITMYVKCGDLVRAKGIFNRFLF-KDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQ 433

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD +T +GVLSAC  SG + EG EI+ ++  TY+++P  E  AC+VD+LGRAG++D A++
Sbjct: 434 PDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAME 493

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
            ++ MP+EP   +WGAL+ A   H   ++ ++A + L +LEP+N   YV LS++YA+  R
Sbjct: 494 LVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGR 553

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD-KAHPCSVSIYEMLDDLILIMR 535
           W  V  LR  + +R + K PGCSWI +  K H F+  D K+HP    I +ML+ L   +R
Sbjct: 554 WRDVEVLRKKI-NRRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLR 612

Query: 536 GAAASP 541
            A   P
Sbjct: 613 EAGYCP 618



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 27/278 (9%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+++S Y +  K  + L LFD+MPQRN  S+N  ISG+  +G   +V  +R+VFD M  R
Sbjct: 56  NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNG---MVADARKVFDVMPER 112

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV +WT+M+ GYVQ G ++EA  LF EM  +     N VS   ++        +   K++
Sbjct: 113 NVVSWTSMVRGYVQEGMVEEAEKLFWEMPRR-----NVVSWTVMIGGLLKESRIDDAKKL 167

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
                 K    DV +   +I  Y + G LD AR +F++    ++  TW+++VSGY  +G+
Sbjct: 168 FDMIPEK----DVVVVTNMIGGYCQVGRLDEARELFDEMKV-RNVFTWTTMVSGYAKNGR 222

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
              A  L+  M     + + ++   +L    +SG + E  E++ ++       P   I A
Sbjct: 223 VDVARKLFEVM----PERNEVSWTAMLMGYTQSGRMKEAFELFEAM-------PVKWIVA 271

Query: 400 C--VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
           C  ++   G AG++ RA    + M  E     W A++ 
Sbjct: 272 CNEMILQFGLAGEMHRARMMFEGMK-ERDEGTWNAMIK 308



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 128/300 (42%), Gaps = 67/300 (22%)

Query: 194 ISGHASSGDFSLVVRSRRVFDQ--MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
           IS +   GD   +  +R+VFD   + +R + +W AM++ Y ++    +AL+LF +M  + 
Sbjct: 26  ISRYGRIGD---IHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQR- 81

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
               N VS                                    N +I  Y K G +  A
Sbjct: 82  ----NTVSF-----------------------------------NGMISGYVKNGMVADA 102

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
           R+VF D    ++ ++W+S+V GY   G   EA  L+ +M     + ++++   ++    +
Sbjct: 103 RKVF-DVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM----PRRNVVSWTVMIGGLLK 157

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG---RAGQLDRALDFIKTMPVEPSPS 428
              I++  ++++ +       P  ++   V +M+G   + G+LD A +    M V  +  
Sbjct: 158 ESRIDDAKKLFDMI-------PEKDV-VVVTNMIGGYCQVGRLDEARELFDEMKVR-NVF 208

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPE-NPSNYVSLSNLYASSRRWDAVAELRTMM 487
            W  +VS    +G     D+A K L ++ PE N  ++ ++   Y  S R     EL   M
Sbjct: 209 TWTTMVSGYAKNGRV---DVARK-LFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAM 264


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 163/504 (32%), Positives = 279/504 (55%), Gaps = 47/504 (9%)

Query: 40  KQSHSQILSLGHISNPFVSTKLI--TAYALCGQPTQSQLV------FNSIQHKDVYLYNS 91
           KQ H+ ++  G  SN     KL+  TA ++ G    S ++      F  I   D +++N+
Sbjct: 18  KQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFMWNT 77

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
            I G  ++H    A+ L++ M   +V PD+FT   + K   ++  +N G  +HG  +++G
Sbjct: 78  YIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRLG 137

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F  +V++ N+L+  + KCG      ++FD+  + +V +W+  I+G+A  GD S+   +R+
Sbjct: 138 FGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSV---ARK 194

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE----------------- 254
           +FD+M +R++ +W  MI  Y ++G+++ A  LF E  +KD +                  
Sbjct: 195 LFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREA 254

Query: 255 -------------PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH---DVSLCNAL 298
                        P++V+++S+L  C+ L  L  G+++H   I  E+N       L NAL
Sbjct: 255 LELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKII--EMNKGKLSTLLGNAL 312

Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           +DMY+KCG++  A RVF     +KD ++W+S++SG   HG   E++ L+ +M      PD
Sbjct: 313 VDMYAKCGNIGKAVRVFWLIR-DKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPD 371

Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
            +T VGVL+AC  +G ++EG   ++ + N Y+I+PT   C CVVDMLGRAG L  A +FI
Sbjct: 372 EVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFI 431

Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
            +M +EP+  +W +L+ A  +HG+ E+   A + L+++  +   +YV LSN+YAS   WD
Sbjct: 432 ASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQGEWD 491

Query: 479 AVAELRTMMKDRGLKKSPGCSWIS 502
               +R +M D G+ K+ G S++ 
Sbjct: 492 GAENVRKLMDDNGVTKNRGSSFVE 515



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 38/221 (17%)

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVIL--ANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189
           G +K ++  M+++GL+  +GF+  ++L  A S++            L +F ++PQ +   
Sbjct: 15  GTLKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDTFM 74

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
           WN  I G + S D    V +  ++ QM +R+V                            
Sbjct: 75  WNTYIRGSSQSHD---PVHAVALYAQMDQRSV---------------------------- 103

Query: 250 KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
               +P+  +   VL  C+ L  ++ G  +HG  +R     +V + N L+  ++KCG L 
Sbjct: 104 ----KPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLK 159

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
            A  +F+DS    D + WS++++GY   G    A  L+++M
Sbjct: 160 VATDIFDDSD-KGDVVAWSALIAGYAQRGDLSVARKLFDEM 199


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 162/492 (32%), Positives = 275/492 (55%), Gaps = 40/492 (8%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H   + +G + + +V   L+  Y++CG+   +  VF+ +  +DV  +  LI+GYV+ 
Sbjct: 125 EQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRT 184

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
              +EA+ LF  M   +V P+  T  ++    G +  L++G  +HGL  K  F + +++ 
Sbjct: 185 GLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVG 241

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+L+ MYVKC    ECL                                +R++FD++  R
Sbjct: 242 NALVDMYVKC----ECL------------------------------CEARKLFDELPDR 267

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           ++ +WT++I+G VQ     ++L LF +MQ+   +EP+++ L SVL  C+SL  L  G+ +
Sbjct: 268 DIVSWTSIISGLVQCKQPKDSLELFYDMQISG-VEPDRIILTSVLSACASLGALDYGRWV 326

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
             +  R+ +  D+ +  AL+DMY+KCG ++ A  +F     N++  TW++++ G  +HG 
Sbjct: 327 QEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIP-NRNIFTWNALLGGLAMHGH 385

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT-YRIKPTTEIC 398
           GHEA+  +  M+  G +P+ +T + +L+AC  SGL+ EG   +  +I+  +   P  E  
Sbjct: 386 GHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHY 445

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C++D+L RAG LD A  FI+ MP+ P   IWGAL+SA   +GN E+       L++L+ 
Sbjct: 446 GCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLLELKS 505

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
           ++   YV LSN+YA++ RWD V  +R +MKD+G++K PG S I + G+ H F V D  H 
Sbjct: 506 QDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDGEAHEFLVGDTNHS 565

Query: 519 CSVSIYEMLDDL 530
            +  I+ +L+ L
Sbjct: 566 RNEDIHILLNIL 577



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P+  +   VL  C+  +G+  G+Q+HG A++     D+ + N+L+  YS CG    A RV
Sbjct: 103 PDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRV 162

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F D    +D ++W+ ++SGY   G   EA+ L+ KM  +   P++ T V VL ACGR G 
Sbjct: 163 F-DEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDVV---PNVATFVSVLVACGRMGY 218

Query: 375 INEGLEIYNSV 385
           ++ G  ++  V
Sbjct: 219 LSMGKGVHGLV 229



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 4/132 (3%)

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK-CGSLDCARRVF 315
           K+ L++ +  C ++  L   KQIH   I   L HD  + + + + + K  G +D A    
Sbjct: 5   KLRLLNSIHRCKTIRSL---KQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFL 61

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
             +  +   + ++++++ Y        A L+Y ++V  G  PD+ T   VL AC +   +
Sbjct: 62  NQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGV 121

Query: 376 NEGLEIYNSVIN 387
            EG +++   + 
Sbjct: 122 QEGEQVHGVAVK 133


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 181/534 (33%), Positives = 286/534 (53%), Gaps = 52/534 (9%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ--HKDVYLYNSLINGYVKNH 100
           H+ +L LGH S+ FV   +I  YA  G    ++ VF+ I    + V  +N++++GY K  
Sbjct: 118 HAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWE 177

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
              +A  LF  M   NV     T   +     ++KDL           +      V+  N
Sbjct: 178 SEGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPE----RSVVSWN 229

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNV----GSWNVRISGHASSGDFSL---VVRS---- 209
           +++S Y + G   E L LFDEM    +     +W   IS  +S GD  L   +VR+    
Sbjct: 230 AMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK 289

Query: 210 -------------------------RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
                                    R++F+ M  RNV  W +MI GY QNG    A+ LF
Sbjct: 290 RIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELF 349

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
            EM    ++ P++V++VSV+  C  L  L  G  +  F    ++   +S  NA+I MYS+
Sbjct: 350 KEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSR 409

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           CGS++ A+RVF++ +  +D +++++++SG+  HG G EA+ L + M   G +PD +T +G
Sbjct: 410 CGSMEDAKRVFQEMA-TRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIG 468

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVE 424
           VL+AC  +GL+ EG +++ S+ +     P  +  AC+VD+LGR G+L+ A   ++ MP+E
Sbjct: 469 VLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPME 523

Query: 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484
           P   ++G+L++AS +H   E+ +LA   L +LEP+N  N++ LSN+YAS+ RW  V  +R
Sbjct: 524 PHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIR 583

Query: 485 TMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
             MK  G+KK+ G SW+   GK H F VAD++H  S  IY++L +L   MR A 
Sbjct: 584 EAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAG 637



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 215/446 (48%), Gaps = 63/446 (14%)

Query: 40  KQSHSQIL--SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           +Q H+QI+  SL H  N +V+  +     L   P  + L+FNS  + +V+++ S++  Y 
Sbjct: 18  RQLHAQIIHNSLHH-HNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFYS 76

Query: 98  KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
               H + + ++  M    V PD F    + K +G       G+  H   +K+G   D  
Sbjct: 77  HLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLGHGSDAF 131

Query: 158 LANSLMSMYVKCGKFSECLNLFDE---------------------------------MPQ 184
           + N+++ MY + G       +FDE                                 MP+
Sbjct: 132 VRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPE 191

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           RNV +W   ++G+A   D      +RR FD M  R+V +W AM++GY QNG  +EAL LF
Sbjct: 192 RNVITWTAMVTGYAKVKDLEA---ARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLF 248

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSS----LIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
            EM +   IEP++ + V+V+  CSS     +  S  + +H    +K +  +  +  AL+D
Sbjct: 249 DEM-VNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLH----QKRIQLNCFVRTALLD 303

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDI 359
           MY+K G LD AR++F ++   ++ +TW+S+++GY  +G+   A+ L+ +M+      PD 
Sbjct: 304 MYAKFGDLDSARKLF-NTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDE 362

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVI---NTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           +T+V V+SACG  G     LE+ N V+      +IK +      ++ M  R G ++ A  
Sbjct: 363 VTMVSVISACGHLG----ALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKR 418

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGN 442
             + M      S +  L+S    HG+
Sbjct: 419 VFQEMATRDVVS-YNTLISGFAAHGH 443



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 129/325 (39%), Gaps = 73/325 (22%)

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +F+     NV+ +T+M+  Y    D  + ++++ +MQ    + P+      V P      
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQ-GCGVRPDAF----VYPILIKSA 110

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSI 330
           G +GG   H   ++     D  + NA+IDMY++ G +  AR+VF++   + +    W+++
Sbjct: 111 G-TGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAM 169

Query: 331 VSGYGLHGKGHEAVLLYNKMV----------------------------CLGSKPDIITI 362
           VSGY       +A  L++ M                             C+  +  +++ 
Sbjct: 170 VSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPER-SVVSW 228

Query: 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKP-----TTEICAC----------------- 400
             +LS   ++GL  E L +++ ++N   I+P      T I AC                 
Sbjct: 229 NAMLSGYAQNGLAEEALRLFDEMVNA-GIEPDETTWVTVISACSSRGDPCLAASLVRTLH 287

Query: 401 -------------VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
                        ++DM  + G LD A     TMP   +   W ++++    +G S M  
Sbjct: 288 QKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGR-NVVTWNSMIAGYAQNGQSAMAI 346

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYA 472
             +K +I  +   P     +S + A
Sbjct: 347 ELFKEMITAKKLTPDEVTMVSVISA 371


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 171/522 (32%), Positives = 281/522 (53%), Gaps = 36/522 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  A   +  L +Q H  ++     S+ +++  L+  YA  G    ++ VF+ I
Sbjct: 305 TLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWI 364

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D+ L+N+LI+G      H EAL LF  M       +  TLA + K +  ++ ++   
Sbjct: 365 PQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTR 424

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H L+ K+GF+ D  + N L+  Y KC    +CLN                        
Sbjct: 425 QVHALAEKLGFLSDSHVVNGLIDSYWKC----DCLNY----------------------- 457

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  + RVF++    ++ A+T+MI    Q    ++A+ LF+EM L+  ++P+   L 
Sbjct: 458 -------AYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEM-LRKGLDPDPFVLS 509

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C+SL     GKQ+H   I+++   DV   NAL+  Y+KCGS++ A   F      
Sbjct: 510 SLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLP-E 568

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           K  ++WS+++ G   HG G  A+ ++++MV     P+ IT+  VL AC  +GL++E    
Sbjct: 569 KGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRY 628

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +NS+   + I+ T E  AC++D+LGRAG+LD A++ + +MP + + ++WGAL++AS +H 
Sbjct: 629 FNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHR 688

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           + E+  LA + L  LEPE    +V L+N YAS+  WD VA++R +MKD  +KK P  SW+
Sbjct: 689 DPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWV 748

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            +  K H F V DK+HP +  IY  LD+L  +M  A   P++
Sbjct: 749 ELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNV 790



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 206/466 (44%), Gaps = 46/466 (9%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A  +SL      H+ +L  G  +       L++ Y+ C  P  ++ VF+ I
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSGLFA--VFRNHLLSFYSKCRLPGSARRVFDEI 63

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
                  ++SL+  Y  N    +AL  F +M   +V  ++F L  + K +    D   G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCA---PDAGFGT 120

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H L++  G   D+ +AN+L++MY                                  G
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMY----------------------------------G 146

Query: 202 DFSLVVRSRRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
            F  V  +R VFD+    RN  +W  +++ YV+N     A+ +F EM +   ++PN+   
Sbjct: 147 GFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEM-VWGGVQPNEFGF 205

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
             V+  C+    L  G+++H   IR   + DV   NAL+DMYSK G +  A  VF     
Sbjct: 206 SCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVP- 264

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
             D ++W++ +SG  LHG    A+ L  +M   G  P++ T+  +L AC  SG  N G +
Sbjct: 265 ETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQ 324

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           I+  ++          I   +VDM  + G LD A      +P +    +W AL+S    H
Sbjct: 325 IHGFMVKA-NADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIP-QRDLVLWNALISG-CSH 381

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486
           G    + L+    ++ E  +  N  +L+ +  S+   +A+++ R +
Sbjct: 382 GAQHAEALSLFCRMRKEGFD-VNRTTLAAVLKSTASLEAISDTRQV 426



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 190/412 (46%), Gaps = 40/412 (9%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R L+  ++ H+ ++  G+  + F +  L+  Y+  G    + +VF  +   DV  +N+ I
Sbjct: 216 RDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFI 275

Query: 94  NGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
           +G V  HGH++ ALEL   M  S + P+ FTL++I K        N+G  IHG  +K   
Sbjct: 276 SGCVL-HGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANA 334

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             D  +A  L+ MY K G       L D+                           +++V
Sbjct: 335 DSDNYIAFGLVDMYAKHG-------LLDD---------------------------AKKV 360

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
           FD + +R++  W A+I+G        EAL LF  M+ K+  + N+ +L +VL + +SL  
Sbjct: 361 FDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMR-KEGFDVNRTTLAAVLKSTASLEA 419

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           +S  +Q+H  A +     D  + N LID Y KC  L+ A RVFE    + D I ++S+++
Sbjct: 420 ISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHG-SYDIIAFTSMIT 478

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
                  G +A+ L+ +M+  G  PD   +  +L+AC       +G +++  +I    + 
Sbjct: 479 ALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS 538

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
                 A +V    + G ++ A      +P E     W A++     HG+ +
Sbjct: 539 DVFAGNA-LVYTYAKCGSIEDADLAFSGLP-EKGVVSWSAMIGGLAQHGHGK 588


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 260/461 (56%), Gaps = 17/461 (3%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +N++I+GYV    + EA +L   M+   +  D++T  ++   +      N+G  +H   +
Sbjct: 242 WNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL 301

Query: 149 KI------GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +        FV+ V   N+L+++Y +CGK  E   +FD+MP +++ SWN  +SG  ++  
Sbjct: 302 RTVVQPSGHFVLSV--NNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNA-- 357

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
              +  +  +F +M  R++  WT MI+G  QNG  +E L LF +M+L+  +EP   +   
Sbjct: 358 -RRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEG-LEPCDYAYAG 415

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC--NALIDMYSKCGSLDCARRVFEDSSF 320
            + +CS L  L  G+Q+H   I  +L HD SL   NALI MYS+CG ++ A  VF    +
Sbjct: 416 AIASCSVLGSLDNGQQLHSQII--QLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPY 473

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
             D+++W+++++    HG G +A+ LY KM+     PD IT + +LSAC  +GL+ EG  
Sbjct: 474 -VDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRH 532

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            ++++   Y I P  +  + ++D+L RAG    A +  ++MP EP   IW AL++   +H
Sbjct: 533 YFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIH 592

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
           GN E+   A   L++L P+    Y+SLSN+YA+  +WD VA +R +M++RG+KK PGCSW
Sbjct: 593 GNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSW 652

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           I +    H F V D  HP   ++Y  L+ L+  MR     P
Sbjct: 653 IEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVP 693



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 205/446 (45%), Gaps = 54/446 (12%)

Query: 58  STKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           +T +++AY+  G    +  +FN+  +  +D   YN++I  +  +H  + AL+LF  M   
Sbjct: 65  ATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRL 124

Query: 116 NVSPDDFTLATISKLSGEIKDLNVG-MLIHGLSIKIGFVVDVILANSLMSMYVKCGK--- 171
              PD FT +++      I D       +H    K G +    + N+LMS YV C     
Sbjct: 125 GFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPL 184

Query: 172 FSECL------NLFDEMP--QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
            + C+       LFDE P  +R+  +W   I+G+  + D   +V +R + + M      A
Sbjct: 185 VNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDD---LVAARELLEGMTDHIAVA 241

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
           W AMI+GYV  G  +EA  L   M     I+ ++ +  SV+   S+    + G+Q+H + 
Sbjct: 242 WNAMISGYVHRGFYEEAFDLLRRMH-SLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYV 300

Query: 284 IRKELNHD----VSLCNALIDMYSKCGSLDCARRVFE----------------------- 316
           +R  +       +S+ NALI +Y++CG L  ARRVF+                       
Sbjct: 301 LRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRI 360

Query: 317 ---DSSFN----KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
              +S F     +  +TW+ ++SG   +G G E + L+N+M   G +P      G +++C
Sbjct: 361 EEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASC 420

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
              G ++ G ++++ +I       +  +   ++ M  R G ++ A     TMP   S S 
Sbjct: 421 SVLGSLDNGQQLHSQIIQLGH-DSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVS- 478

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQ 455
           W A+++A   HG+       Y+ +++
Sbjct: 479 WNAMIAALAQHGHGVQAIQLYEKMLK 504



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 144/353 (40%), Gaps = 77/353 (21%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS------------------------- 91
           V+  LIT Y  CG+  +++ VF+ +  KD+  +N+                         
Sbjct: 315 VNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRS 374

Query: 92  ------LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
                 +I+G  +N    E L+LF+ M    + P D+  A        +  L+ G  +H 
Sbjct: 375 LLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHS 434

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             I++G    + + N+L++MY +CG       +F  MP  +  SWN              
Sbjct: 435 QIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWN-------------- 480

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                               AMI    Q+G   +A+ L+ +M LK+ I P++++ +++L 
Sbjct: 481 --------------------AMIAALAQHGHGVQAIQLYEKM-LKEDILPDRITFLTILS 519

Query: 266 TCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            CS    +  G+         + I  E +H     + LID+  + G    A+ V E   F
Sbjct: 520 ACSHAGLVKEGRHYFDTMRVCYGITPEEDH----YSRLIDLLCRAGMFSEAKNVTESMPF 575

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD--IITIVGVLSACGR 371
              A  W ++++G  +HG     +   ++++ L  + D   I++  + +A G+
Sbjct: 576 EPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQ 628



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 158/365 (43%), Gaps = 59/365 (16%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H   +  GF    ++ N L+  Y K         LFD++P+ ++ +    +S ++++G+
Sbjct: 18  VHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGN 77

Query: 203 FSLVVRSRRVFDQ--MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
             L   + ++F+   M  R+  ++ AMI  +  + D   AL LF++M+    + P+  + 
Sbjct: 78  IKL---AHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFV-PDPFTF 133

Query: 261 VSVLPTCSSLIG-LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS---------LDC 310
            SVL   S +    +  +Q+H    +       S+ NAL+  Y  C S         +  
Sbjct: 134 SSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAA 193

Query: 311 ARRVFEDSS-----------------FNKD---------------AITWSSIVSGYGLHG 338
           AR++F+++                   N D               A+ W++++SGY   G
Sbjct: 194 ARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRG 253

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              EA  L  +M  LG + D  T   V+SA   +GL N G +++  V+ T  ++P+    
Sbjct: 254 FYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTV-VQPSGHFV 312

Query: 399 ACV----VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV-----MHGNSEMQDLA 449
             V    + +  R G+L  A      MPV+   S W A++S  V        NS  +++ 
Sbjct: 313 LSVNNALITLYTRCGKLVEARRVFDKMPVKDLVS-WNAILSGCVNARRIEEANSIFREMP 371

Query: 450 YKSLI 454
            +SL+
Sbjct: 372 VRSLL 376



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 6/209 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           SL   +Q HSQI+ LGH S+  V   LIT Y+ CG    +  VF ++ + D   +N++I 
Sbjct: 425 SLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIA 484

Query: 95  GYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGF 152
             +  HGH  +A++L+  M   ++ PD  T  TI         +  G      + +  G 
Sbjct: 485 A-LAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGI 543

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSR- 210
             +    + L+ +  + G FSE  N+ + MP +     W   ++G    G+  L +++  
Sbjct: 544 TPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAAD 603

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           R+ + M +++   + ++ N Y   G  DE
Sbjct: 604 RLLELMPQQDG-TYISLSNMYAALGQWDE 631


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 173/525 (32%), Positives = 280/525 (53%), Gaps = 39/525 (7%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           NYT  T    L+ S    +    K  H QIL   +  +P V   L+  Y   G  + +  
Sbjct: 247 NYTFDTA---LKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFK 303

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VFN +   DV  ++ +I  + +N   N+A+++F  M    V P++FTL++I       K 
Sbjct: 304 VFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKC 363

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
             +G  +HGL +K+GF +DV ++N+L+ +Y KC K    + LF E+  +N          
Sbjct: 364 SGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKN---------- 413

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
                                   V +W  +I GY   G+  +AL +F E  L++++   
Sbjct: 414 ------------------------VVSWNTVIVGYENLGEGGKALNMFRE-ALRNQVSVT 448

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           +V+  S L  C+SL  +  G Q+HG AI+      V++ N+LIDMY+KCG +  A+ VF 
Sbjct: 449 EVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFN 508

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           +     D  +W++++SGY  HG G +A+ +++ M     KP+ +T +GVLS C  +GLI+
Sbjct: 509 EME-TIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLID 567

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +G + + S+I  + I+P  E   C+V + GR+GQLD+A++ I+ +P EPS  IW A++SA
Sbjct: 568 QGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSA 627

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
           S+   N E    + + ++++ P++ + YV LSN+YA +++W  VA +R  MK++G+KK P
Sbjct: 628 SMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEP 687

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           G SWI   G  H FSV    HP    I  ML+ L +    A   P
Sbjct: 688 GLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGYVP 732



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/471 (22%), Positives = 193/471 (40%), Gaps = 77/471 (16%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
            K  H  IL  G   + F +  L+ AY   G    +  +F+ +  ++   Y +L  GY  
Sbjct: 68  AKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGY-- 125

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
                + + L+S ++      +     +  KL   +    +   +H   +K+G+  +  +
Sbjct: 126 --ACQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFV 183

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF--SLVVRSRRVFDQM 216
             +L++ Y  CG      ++F+ +  +++  W   +S +  +G F  SL + SR   D  
Sbjct: 184 GAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGF 243

Query: 217 KRRNVYAWTAM--------------ING--------------------YVQNGDLDEALV 242
              N    TA+              ++G                    Y Q GD+ +A  
Sbjct: 244 MPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFK 303

Query: 243 LFLEMQLKDRIE------------------------------PNKVSLVSVLPTCSSLIG 272
           +F EM   D +                               PN+ +L S+L  C+  IG
Sbjct: 304 VFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCA--IG 361

Query: 273 -LSG-GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             SG G+Q+HG  ++   + DV + NALID+Y+KC  +D A ++F + S +K+ ++W+++
Sbjct: 362 KCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELS-SKNVVSWNTV 420

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           + GY   G+G +A+ ++ + +        +T    L AC     +  G++++   I T  
Sbjct: 421 IVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNN 480

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
            K    +   ++DM  + G +  A      M      S W AL+S    HG
Sbjct: 481 AKRVA-VSNSLIDMYAKCGDIKVAQTVFNEMETIDVAS-WNALISGYSTHG 529



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 100/236 (42%), Gaps = 16/236 (6%)

Query: 6   ARNTF--ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
           A N F  AL    + T  T    L   A+  S++L  Q H   +   +     VS  LI 
Sbjct: 433 ALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLID 492

Query: 64  AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT 123
            YA CG    +Q VFN ++  DV  +N+LI+GY  +    +AL +F  M  S+  P+  T
Sbjct: 493 MYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLT 552

Query: 124 -LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL------MSMYVKCGKFSECL 176
            L  +S  S      N G++  G       + D  +   L      + ++ + G+  + +
Sbjct: 553 FLGVLSGCS------NAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAM 606

Query: 177 NLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
           NL + +P + +V  W   +S   +  +     RS     ++  ++   +  + N Y
Sbjct: 607 NLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMY 662


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 173/523 (33%), Positives = 277/523 (52%), Gaps = 9/523 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  A  ++ +    +H  ++ LG +   FV   L+ +YA  G    S+  F+ +
Sbjct: 112 TLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEM 171

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             ++V  +NS+INGY +     EA  LF  M    +  D+FTL ++        +L  G 
Sbjct: 172 VDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGK 231

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           L+H   +  G  +D+ILAN+L+ MY KCG        FD MP +N  SW   +   A   
Sbjct: 232 LVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRA 291

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  +R  F+Q+  +++ +W AMI+ YVQ G   EAL L+  M+L   + P++ +L 
Sbjct: 292 SID---AARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLG-LAPDEFTLA 347

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           +VL  C  L  L+ GK IH   IR    N  V+L N+L+DMY++CG +D A  +F +   
Sbjct: 348 AVLSACGQLGDLASGKMIHD-CIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMP- 405

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           +K+ I+W++I+    +HG+  +A++ +  MV     PD IT V +LSAC   GL+  G  
Sbjct: 406 SKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQY 465

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            + ++ + Y +KP  E  AC+VD+LGR GQL +A+D IK MP+ P   +WGAL+ A  +H
Sbjct: 466 YFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIH 525

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
           G+ ++     K L++LE  +   +V +SN+   + +W+ +  LR +M++ G+KK+ G S 
Sbjct: 526 GHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSS 585

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLI--LIMRGAAASP 541
           I  +   H        H  S  +Y   D L   L+   A A P
Sbjct: 586 IETNSNIHESGAEGIGHESSDDMYVGDDRLPHHLVFPNALAVP 628



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 211/448 (47%), Gaps = 77/448 (17%)

Query: 57  VSTKLITAYALCGQPT-----QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           V+++++ +Y  C  P       ++ +F+ I   D ++YNSLI  Y  +H   EAL L   
Sbjct: 43  VTSQILASY--CALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRG 100

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    + P++FTL  + K    ++     M+ HG+ +K+GFV  V + N+L+  Y   G 
Sbjct: 101 MIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGS 160

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             +    FDEM  RNV SWN  I+G+A +G+      +  +F+ M+R+ + A        
Sbjct: 161 LGDSRRFFDEMVDRNVVSWNSMINGYAQAGN---TREACSLFEGMRRQGLLA-------- 209

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
                                   ++ +LVS+L  CS+   L  GK +H   + +    D
Sbjct: 210 ------------------------DEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRID 245

Query: 292 VSLCNALIDMYSKCG-------------------------------SLDCARRVFEDSSF 320
           + L NAL+DMY KCG                               S+D AR  FE    
Sbjct: 246 LILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIP- 304

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            K  I+W++++S Y   G+ HEA+ LYN+M  LG  PD  T+  VLSACG+ G +  G  
Sbjct: 305 EKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKM 364

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           I++ + + +   P   +   ++DM  R GQ+D A+     MP +   S W A++ A  MH
Sbjct: 365 IHDCIRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVIS-WNAIIGALAMH 422

Query: 441 GNSEMQDLAYKSLI-QLEPENPSNYVSL 467
           G ++   + ++S++    P +   +V+L
Sbjct: 423 GRAQDALMFFRSMVSDAFPPDEITFVAL 450


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 171/518 (33%), Positives = 276/518 (53%), Gaps = 49/518 (9%)

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVS 118
           K I ++        ++ VF  +  +    +N++++GY K  G   EA ELF  +      
Sbjct: 78  KTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI----PE 133

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-----VVDVILANSLMSMYVKCGKFS 173
           PD  +   +         L   +  +G+   + F     V D+   N+L+S + + G+  
Sbjct: 134 PDSVSYNIM---------LVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQ 184

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGD----------------------------FSL 205
           +  +LF  MP++N  SW+  ISG+   GD                            F  
Sbjct: 185 KAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGK 244

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  + R+F +M  +N+  W +MI GYV+N   ++ L +F  M ++ R+ PN +SL SVL 
Sbjct: 245 VELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLL 303

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            CS+L  L  G+Q+H    +  L+ D + C +LI MY KCG LD A ++F +    KD I
Sbjct: 304 GCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVI 362

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           TW++++SGY  HG G +A+ L++KM     KPD IT V V+ AC  +G ++ G++ + S+
Sbjct: 363 TWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSM 422

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
              + I+       CV+D+LGRAG+LD A+  IK MP  P  +I+G L+ A  +H N ++
Sbjct: 423 KKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDL 482

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            + A ++L+ L+P + + YV L+N+YA++ +WD VA++R MMK+  + K PG SWI I  
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKS 542

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            TH F  +D+ HP   SI++ L++L   M+ A   P L
Sbjct: 543 VTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDL 580


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 170/517 (32%), Positives = 273/517 (52%), Gaps = 36/517 (6%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A   +  L +Q H  ++     S+ ++   L+  YA       +  VF+ + H+D+
Sbjct: 310 LKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDL 369

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
            L+N+LI+G      H+EA  +F  +    +  +  TLA + K +  ++  +    +H L
Sbjct: 370 ILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHAL 429

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           + KIGF+ D  + N L+  Y KC   S+ + +F+E                 SSGD    
Sbjct: 430 AEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE----------------CSSGD---- 469

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                         + A T+MI    Q    + A+ LF+EM L+  +EP+   L S+L  
Sbjct: 470 --------------IIAVTSMITALSQCDHGEGAIKLFMEM-LRKGLEPDPFVLSSLLNA 514

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C+SL     GKQ+H   I+++   D    NAL+  Y+KCGS++ A   F  S   +  ++
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFS-SLPERGVVS 573

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           WS+++ G   HG G  A+ L+ +MV  G  P+ IT+  VL AC  +GL++E    +NS+ 
Sbjct: 574 WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             + I  T E  +C++D+LGRAG+LD A++ + +MP + + S+WGAL+ AS +H + E+ 
Sbjct: 634 EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELG 693

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK 506
            LA + L  LEPE    +V L+N YASS  W+ VA++R +MKD  +KK P  SW+ +  K
Sbjct: 694 KLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDK 753

Query: 507 THCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            H F V DK+HP +  IY  LD+L  +M  A   P++
Sbjct: 754 VHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNV 790



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 209/470 (44%), Gaps = 48/470 (10%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           ++ T+   L   A  ++L      H+ +L  G +++  +   LI+ Y+ C +P  ++ VF
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVF 60

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + I       ++SL+  Y  N     A++ F  M    V  ++F L  + K    + D  
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQ 117

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  +H +++  GF  DV +AN+L++MY                                
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMY-------------------------------- 145

Query: 199 SSGDFSLVVRSRRVFDQM-KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
             G F  +  +RRVFD+    RN  +W  +++ YV+N    +A+ +F EM +   I+P +
Sbjct: 146 --GGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM-VWSGIQPTE 202

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
                V+  C+    +  G+Q+H   +R     DV   NAL+DMY K G +D A  +FE 
Sbjct: 203 FGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEK 262

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
              + D ++W++++SG  L+G  H A+ L  +M   G  P++  +  +L AC  +G  + 
Sbjct: 263 MP-DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDL 321

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G +I+  +I          I   +VDM  +   LD A+     M       +W AL+S  
Sbjct: 322 GRQIHGFMIKA-NADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMS-HRDLILWNALISG- 378

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPS-NYVSLSNLYASSRRWDAVAELRTM 486
             HG     D A+     L  E    N  +L+ +  S+   +A +  R +
Sbjct: 379 CSHGGR--HDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQV 426



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 133/338 (39%), Gaps = 46/338 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+ +A+  +   T+Q H+    +G I +  V   LI +Y  C   + +  VF   
Sbjct: 406 TLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEEC 465

Query: 82  QHKDVYLYNSLINGYVK-NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
              D+    S+I    + +HG   A++LF  M    + PD F L+++      +     G
Sbjct: 466 SSGDIIAVTSMITALSQCDHGEG-AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 524

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             +H   IK  F+ D    N+L+  Y KCG   +    F  +P+R V SW          
Sbjct: 525 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW---------- 574

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                   +AMI G  Q+G    AL LF  M + + I PN +++
Sbjct: 575 ------------------------SAMIGGLAQHGHGKRALELFGRM-VDEGINPNHITM 609

Query: 261 VSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
            SVL  C+    +   K+        F I +   H     + +ID+  + G LD A  + 
Sbjct: 610 TSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEH----YSCMIDLLGRAGKLDDAMELV 665

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
               F  +A  W +++    +H       L   K+  L
Sbjct: 666 NSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFIL 703



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 8/204 (3%)

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           SL N LI  YSKC    CARRVF++   +   ++WSS+V+ Y  +G    A+  ++ M  
Sbjct: 38  SLRNHLISFYSKCRRPCCARRVFDEIP-DPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRA 96

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G   +   +  VL     + L   G +++   + T        +   +V M G  G +D
Sbjct: 97  EGVCCNEFALPVVLKCVPDAQL---GAQVHAMAMAT-GFGSDVFVANALVAMYGGFGFMD 152

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI--QLEPENPSNYVSLSNL 470
            A         E +   W  L+SA V +         +  ++   ++P     +  + N 
Sbjct: 153 DARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP-TEFGFSCVVNA 211

Query: 471 YASSRRWDAVAELRTMMKDRGLKK 494
              SR  DA  ++  M+   G +K
Sbjct: 212 CTGSRNIDAGRQVHAMVVRMGYEK 235


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 163/504 (32%), Positives = 271/504 (53%), Gaps = 42/504 (8%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           +++  Q H   + +G   + FV   L+  YA CG    ++ VF  +  +D+ ++N +++ 
Sbjct: 183 IEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMVSC 242

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFT----LATISKLSGEIKDLNVGMLIHGLSIKIG 151
           YV N    EA  +F++M    V+ D+FT    L+ IS  + E  D   G  +H L ++  
Sbjct: 243 YVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDF--GKQVHSLVLRQS 300

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           F  DV++A++L++MY K                                     ++ +RR
Sbjct: 301 FDSDVLVASALINMYAKSEN----------------------------------IIDARR 326

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VFD+M  RNV AW  MI G+  +GD +E + L  EM L++   P+++++ S++ +C    
Sbjct: 327 VFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLVKEM-LREGFLPDELTISSIISSCGYAS 385

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            ++   Q+H FA++      +S+ N+LI  YSKCGS+  A + FE +S   D +TW+S++
Sbjct: 386 AITETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFELTS-QPDLVTWTSLI 444

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
             Y  HG   ++  ++ KM+  G KPD I  +GVLSAC   GL+ +GL  +  + N Y+I
Sbjct: 445 YAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQI 504

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
            P +E   C+VD+LGR G ++ A + +++MP+E      GA + +  +H N E+  LA +
Sbjct: 505 VPDSEHYTCLVDLLGRYGLINEAFEILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAE 564

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            L  +EPE   NY  +SN++AS + W  V  +R  M+D+   K PGCSWI I  + H F 
Sbjct: 565 KLFLIEPEKSVNYAVMSNIFASQKHWYDVERIRKTMEDKRDAKVPGCSWIEIGNQIHSFV 624

Query: 512 VADKAHPCSVSIYEMLDDLILIMR 535
             DK+HP ++ +Y  L+ L+  M+
Sbjct: 625 SNDKSHPNALEMYVTLNMLLRPMK 648



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 114/255 (44%), Gaps = 35/255 (13%)

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           K+S +   L  G  +H   IK GF   + L N ++S+Y+KC +  +   LF+E+P RNV 
Sbjct: 68  KISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVV 127

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           SWN+ I       D +     R  F   +R                        + LEM 
Sbjct: 128 SWNIMIRASVGRNDENESSGMRLCFSYFRR------------------------MLLEMM 163

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
           + D I  N      ++  C+    +  G Q+H F ++   + D  +  AL+ +Y+KCG +
Sbjct: 164 VPDHITFN-----GLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFV 218

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
           + ARRVF D S  +D + W+ +VS Y  +    EA  ++N M       D  T   +LS 
Sbjct: 219 ENARRVFCDVS-CRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSV 277

Query: 369 CGRSGLINEGLEIYN 383
                + ++ LE Y+
Sbjct: 278 -----ISDDALEYYD 287


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 164/497 (32%), Positives = 271/497 (54%), Gaps = 36/497 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
           R+L   +Q H+QI + G   N  V+ KL+  Y   G    +Q +F+ +  +  Y ++ ++
Sbjct: 64  RNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIV 123

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            GY K         +F  +  S    DD++   + +   ++KDL  G LIH +++K G  
Sbjct: 124 GGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLD 183

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
               +  +L+ MY +C                                   +V  + ++F
Sbjct: 184 YGHFVCATLVDMYARC----------------------------------KVVEDAHQIF 209

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
            +M +R++  WT MI    ++G   E+LV F  M+    I P+KV+LV+V+  C+ L  +
Sbjct: 210 VKMWKRDLATWTVMIGALAESGVPVESLVFFDRMR-NQGIVPDKVALVTVVYACAKLGAM 268

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           +  K IH +      + DV L  A+IDMY+KCGS++ AR +F D    ++ ITWS++++ 
Sbjct: 269 NKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIF-DRMQVRNVITWSAMIAA 327

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           YG HG+G +A+ L+  M+  G  P+ IT V +L AC  +GLI EG   ++S+ + Y + P
Sbjct: 328 YGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTP 387

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             +   C+VD+LGRAG+LD AL+ I+ MPVE    +WGAL+ A  +H + ++ +   +SL
Sbjct: 388 DVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSL 447

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           ++L+ + P +YV LSN+YA++ +W+ +A+ R +M   GL+K PG +WI +  K + F V 
Sbjct: 448 LKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVG 507

Query: 514 DKAHPCSVSIYEMLDDL 530
           DK HP S  IY+ML  L
Sbjct: 508 DKTHPRSNEIYKMLKRL 524


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 179/527 (33%), Positives = 281/527 (53%), Gaps = 40/527 (7%)

Query: 14  TSRNYTSA--TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           T R + S+  T    + + A  R+L   +  H+ ++ +G     + + KL++ Y  CGQ 
Sbjct: 19  THRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQL 78

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
           + ++ +F+ I + ++  +  L     +   + EAL  FS M    + P+ F L +I K  
Sbjct: 79  SNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKAC 138

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS------------------ 173
           G + D   G  +H + +K  F  D  + ++L+ MY KCG                     
Sbjct: 139 GHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMN 198

Query: 174 -------------ECLNLFDEMPQR----NVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
                        E LNL  +M Q     NV SWN  I+G +  GD S+V    R+    
Sbjct: 199 AMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTAN 258

Query: 217 K-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
               +V +WT++I+G+VQN    E    F EM L     P+ V++ S+LP C+++  L  
Sbjct: 259 GVEPDVVSWTSVISGFVQNFHNHEGFDAFKEM-LDQGFCPSSVTISSLLPACTNVANLRH 317

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GK+IHG+A+   +  DV + +AL+DMY+KCG +  A+ +F      ++ +TW+S++ GY 
Sbjct: 318 GKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMP-ERNTVTWNSLIFGYA 376

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            HG  +EA+ L+N+M    +K D +T   VL+AC  +G++  G  ++  +   YRI+P  
Sbjct: 377 NHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRL 436

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           E  AC+VD+LGRAG+L  A D IK MPVEP   +WGAL+ A   HGN E+ ++A + L +
Sbjct: 437 EHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFE 496

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
           LEPE+P + + LSNLYA + RW   A+++ MMK R   K PGCSWI 
Sbjct: 497 LEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 543


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 261/472 (55%), Gaps = 18/472 (3%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           V+   I  Y  C    ++  VF+ ++ +D   +N++I  + +N    E L LF +M  S 
Sbjct: 419 VANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 478

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           + PD+FT  +I K +     L  GM IH   +K G   +  +  SL+ MY KCG   E  
Sbjct: 479 IEPDEFTFGSILK-ACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAE 537

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
            +     QR        +SG     +        ++ ++  +    +W ++I+GYV    
Sbjct: 538 KIHSRFFQR------ANVSGTMEELE--------KMHNKRLQEMCVSWNSIISGYVMKEQ 583

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
            ++A +LF  M ++  I P+K +  +VL TC++L     GKQIH   I+KEL  DV +C+
Sbjct: 584 SEDAQMLFTRM-MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICS 642

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
            L+DMYSKCG L  +R +FE  S  +D +TW++++ GY  HGKG EA+ L+ +M+    K
Sbjct: 643 TLVDMYSKCGDLHDSRLMFE-KSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIK 701

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           P+ +T + +L AC   GLI++GLE +  +   Y + P     + +VD+LG++G++ RAL+
Sbjct: 702 PNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALE 761

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
            I+ MP E    IW  L+    +H N+ E+ + A  +L++L+P++ S Y  LSN+YA + 
Sbjct: 762 LIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAG 821

Query: 476 RWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
            W+ V++LR  M+   LKK PGCSW+ +  + H F V DKAHP    IYE L
Sbjct: 822 MWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEEL 873



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 225/489 (46%), Gaps = 63/489 (12%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A    L+L  Q H+  L     ++  V T  +  YA C     +Q++F++ ++ + 
Sbjct: 288 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNR 347

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             YN++I GY +     +AL LF  +  S +  D+ +L+ + +    +K L+ G+ I+GL
Sbjct: 348 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGL 407

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           +IK    +DV +AN+ + MY KC   +E   +FDEM +R+  SWN  I+ H         
Sbjct: 408 AIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHE-------- 459

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                                     QNG   E L LF+ M L+ RIEP++ +  S+L  
Sbjct: 460 --------------------------QNGKGYETLFLFVSM-LRSRIEPDEFTFGSILKA 492

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV------------ 314
           C+    L  G +IH   ++  +  + S+  +LIDMYSKCG ++ A ++            
Sbjct: 493 CTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSG 551

Query: 315 -------FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
                    +    +  ++W+SI+SGY +  +  +A +L+ +M+ +G  PD  T   VL 
Sbjct: 552 TMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLD 611

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL-DRALDFIKTMPVEPS 426
            C        G +I+  VI    ++    IC+ +VDM  + G L D  L F K++  +  
Sbjct: 612 TCANLASAGLGKQIHAQVIKK-ELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFV 670

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW--DAVAELR 484
              W A++     HG  E     ++ +I LE   P++   +S L A +     D   E  
Sbjct: 671 T--WNAMICGYAHHGKGEEAIQLFERMI-LENIKPNHVTFISILRACAHMGLIDKGLEYF 727

Query: 485 TMMK-DRGL 492
            MMK D GL
Sbjct: 728 YMMKRDYGL 736



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 228/485 (47%), Gaps = 94/485 (19%)

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           K+I  Y+      ++   FN +  +DV  +NS+++GY++N    +++E+F +M    +  
Sbjct: 119 KMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEF 178

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D  T A I K+   ++D ++GM IHG+ +++G   DV+ A++L+ MY K  +F E L +F
Sbjct: 179 DGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVF 238

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN------VYA---------- 223
             +P++N  SW+  I+G   +   SL +   + F +M++ N      +YA          
Sbjct: 239 QGIPEKNSVSWSAIIAGCVQNNLLSLAL---KFFKEMQKVNAGVSQSIYASVLRSCAALS 295

Query: 224 -----------------------WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN---- 256
                                   TA ++ Y +  ++ +A +LF   +  +R   N    
Sbjct: 296 ELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMIT 355

Query: 257 --------------------------KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
                                     ++SL  V   C+ + GLS G QI+G AI+  L+ 
Sbjct: 356 GYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSL 415

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           DV + NA IDMY KC +L  A RVF D    +DA++W++I++ +  +GKG+E + L+  M
Sbjct: 416 DVCVANAAIDMYGKCQALAEAFRVF-DEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSM 474

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
           +    +PD  T   +L AC   G +  G+EI++S++ +     ++  C+ ++DM  + G 
Sbjct: 475 LRSRIEPDEFTFGSILKAC-TGGSLGYGMEIHSSIVKSGMASNSSVGCS-LIDMYSKCGM 532

Query: 411 LDRA-------------------LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           ++ A                   L+ +    ++     W +++S  VM   SE   + + 
Sbjct: 533 IEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFT 592

Query: 452 SLIQL 456
            ++++
Sbjct: 593 RMMEM 597



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 111/197 (56%), Gaps = 5/197 (2%)

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L +G   H   I  GF     + N L+ +Y     F     +FD+MP R+V SWN  I+G
Sbjct: 64  LELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMING 123

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           ++ S D   + ++   F+ M  R+V +W +M++GY+QNG+  +++ +F++M  ++ IE +
Sbjct: 124 YSKSND---MFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG-REGIEFD 179

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
             +   +L  CS L   S G QIHG  +R   + DV   +AL+DMY+K      + RVF+
Sbjct: 180 GRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQ 239

Query: 317 DSSFNKDAITWSSIVSG 333
                K++++WS+I++G
Sbjct: 240 GIP-EKNSVSWSAIIAG 255



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           +T   +T ATV   L   A   S  L KQ H+Q++     S+ ++ + L+  Y+ CG   
Sbjct: 599 ITPDKFTYATV---LDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLH 655

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            S+L+F     +D   +N++I GY  +    EA++LF  M   N+ P+  T  +I +   
Sbjct: 656 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 715

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMP 183
            +  ++ G L +   +K  + +D  L +  +++ +  K GK    L L  EMP
Sbjct: 716 HMGLIDKG-LEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 767



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 22/202 (10%)

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFN----KDAITWSSIVSGYGLHGKGHEAVL 345
            DV   N +I+ YSK   +  A     +S FN    +D ++W+S++SGY  +G+  +++ 
Sbjct: 112 RDVVSWNKMINGYSKSNDMFKA-----NSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIE 166

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVD 403
           ++  M   G + D  T   +L  C      + G++I+  V+   R+   T++ A   ++D
Sbjct: 167 VFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVV---RVGCDTDVVAASALLD 223

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           M  +  +   +L   + +P + S S W A+++  V    + +  LA K   +++  N   
Sbjct: 224 MYAKGKRFVESLRVFQGIPEKNSVS-WSAIIAGCV---QNNLLSLALKFFKEMQKVNAG- 278

Query: 464 YVSLSNLYASS-RRWDAVAELR 484
            VS S +YAS  R   A++ELR
Sbjct: 279 -VSQS-IYASVLRSCAALSELR 298


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 261/472 (55%), Gaps = 18/472 (3%)

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           V+   I  Y  C    ++  VF+ ++ +D   +N++I  + +N    E L LF +M  S 
Sbjct: 377 VANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 436

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           + PD+FT  +I K +     L  GM IH   +K G   +  +  SL+ MY KCG   E  
Sbjct: 437 IEPDEFTFGSILK-ACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAE 495

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
            +     QR        +SG     +        ++ ++  +    +W ++I+GYV    
Sbjct: 496 KIHSRFFQR------ANVSGTMEELE--------KMHNKRLQEMCVSWNSIISGYVMKEQ 541

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
            ++A +LF  M ++  I P+K +  +VL TC++L     GKQIH   I+KEL  DV +C+
Sbjct: 542 SEDAQMLFTRM-MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICS 600

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
            L+DMYSKCG L  +R +FE  S  +D +TW++++ GY  HGKG EA+ L+ +M+    K
Sbjct: 601 TLVDMYSKCGDLHDSRLMFE-KSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIK 659

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           P+ +T + +L AC   GLI++GLE +  +   Y + P     + +VD+LG++G++ RAL+
Sbjct: 660 PNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALE 719

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
            I+ MP E    IW  L+    +H N+ E+ + A  +L++L+P++ S Y  LSN+YA + 
Sbjct: 720 LIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAG 779

Query: 476 RWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
            W+ V++LR  M+   LKK PGCSW+ +  + H F V DKAHP    IYE L
Sbjct: 780 MWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEEL 831



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 225/489 (46%), Gaps = 63/489 (12%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A    L+L  Q H+  L     ++  V T  +  YA C     +Q++F++ ++ + 
Sbjct: 246 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNR 305

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             YN++I GY +     +AL LF  +  S +  D+ +L+ + +    +K L+ G+ I+GL
Sbjct: 306 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGL 365

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           +IK    +DV +AN+ + MY KC   +E   +FDEM +R+  SWN  I+ H         
Sbjct: 366 AIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHE-------- 417

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                                     QNG   E L LF+ M L+ RIEP++ +  S+L  
Sbjct: 418 --------------------------QNGKGYETLFLFVSM-LRSRIEPDEFTFGSILKA 450

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV------------ 314
           C+    L  G +IH   ++  +  + S+  +LIDMYSKCG ++ A ++            
Sbjct: 451 CTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSG 509

Query: 315 -------FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
                    +    +  ++W+SI+SGY +  +  +A +L+ +M+ +G  PD  T   VL 
Sbjct: 510 TMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLD 569

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL-DRALDFIKTMPVEPS 426
            C        G +I+  VI    ++    IC+ +VDM  + G L D  L F K++  +  
Sbjct: 570 TCANLASAGLGKQIHAQVIKK-ELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFV 628

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW--DAVAELR 484
              W A++     HG  E     ++ +I LE   P++   +S L A +     D   E  
Sbjct: 629 T--WNAMICGYAHHGKGEEAIQLFERMI-LENIKPNHVTFISILRACAHMGLIDKGLEYF 685

Query: 485 TMMK-DRGL 492
            MMK D GL
Sbjct: 686 YMMKRDYGL 694



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 228/485 (47%), Gaps = 94/485 (19%)

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           K+I  Y+      ++   FN +  +DV  +NS+++GY++N    +++E+F +M    +  
Sbjct: 77  KMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEF 136

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D  T A I K+   ++D ++GM IHG+ +++G   DV+ A++L+ MY K  +F E L +F
Sbjct: 137 DGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVF 196

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN------VYA---------- 223
             +P++N  SW+  I+G   +   SL +   + F +M++ N      +YA          
Sbjct: 197 QGIPEKNSVSWSAIIAGCVQNNLLSLAL---KFFKEMQKVNAGVSQSIYASVLRSCAALS 253

Query: 224 -----------------------WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN---- 256
                                   TA ++ Y +  ++ +A +LF   +  +R   N    
Sbjct: 254 ELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMIT 313

Query: 257 --------------------------KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
                                     ++SL  V   C+ + GLS G QI+G AI+  L+ 
Sbjct: 314 GYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSL 373

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           DV + NA IDMY KC +L  A RVF D    +DA++W++I++ +  +GKG+E + L+  M
Sbjct: 374 DVCVANAAIDMYGKCQALAEAFRVF-DEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSM 432

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
           +    +PD  T   +L AC   G +  G+EI++S++ +     ++  C+ ++DM  + G 
Sbjct: 433 LRSRIEPDEFTFGSILKAC-TGGSLGYGMEIHSSIVKSGMASNSSVGCS-LIDMYSKCGM 490

Query: 411 LDRA-------------------LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           ++ A                   L+ +    ++     W +++S  VM   SE   + + 
Sbjct: 491 IEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFT 550

Query: 452 SLIQL 456
            ++++
Sbjct: 551 RMMEM 555



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 111/197 (56%), Gaps = 5/197 (2%)

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L +G   H   I  GF     + N L+ +Y     F     +FD+MP R+V SWN  I+G
Sbjct: 22  LELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMING 81

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           ++ S D   + ++   F+ M  R+V +W +M++GY+QNG+  +++ +F++M  ++ IE +
Sbjct: 82  YSKSND---MFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG-REGIEFD 137

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
             +   +L  CS L   S G QIHG  +R   + DV   +AL+DMY+K      + RVF+
Sbjct: 138 GRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQ 197

Query: 317 DSSFNKDAITWSSIVSG 333
                K++++WS+I++G
Sbjct: 198 GIP-EKNSVSWSAIIAG 213



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 6/173 (3%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           +T   +T ATV   L   A   S  L KQ H+Q++     S+ ++ + L+  Y+ CG   
Sbjct: 557 ITPDKFTYATV---LDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLH 613

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            S+L+F     +D   +N++I GY  +    EA++LF  M   N+ P+  T  +I +   
Sbjct: 614 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 673

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMP 183
            +  ++ G L +   +K  + +D  L +  +++ +  K GK    L L  EMP
Sbjct: 674 HMGLIDKG-LEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 725



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 22/202 (10%)

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFN----KDAITWSSIVSGYGLHGKGHEAVL 345
            DV   N +I+ YSK   +  A     +S FN    +D ++W+S++SGY  +G+  +++ 
Sbjct: 70  RDVVSWNKMINGYSKSNDMFKA-----NSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIE 124

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVD 403
           ++  M   G + D  T   +L  C      + G++I+  V+   R+   T++ A   ++D
Sbjct: 125 VFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVV---RVGCDTDVVAASALLD 181

Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
           M  +  +   +L   + +P + S S W A+++  V    + +  LA K   +++  N   
Sbjct: 182 MYAKGKRFVESLRVFQGIPEKNSVS-WSAIIAGCV---QNNLLSLALKFFKEMQKVNAG- 236

Query: 464 YVSLSNLYASS-RRWDAVAELR 484
            VS S +YAS  R   A++ELR
Sbjct: 237 -VSQS-IYASVLRSCAALSELR 256


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/506 (31%), Positives = 275/506 (54%), Gaps = 5/506 (0%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           +  ++ H+++L  G    P     L++AYA       ++  F+    +D++LY++L+   
Sbjct: 18  RAVRRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAV 77

Query: 97  VKNHGHNEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
             +      L L   M   + + PD F LA+++  +G ++ L +G  +H       +  D
Sbjct: 78  SHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSAD 137

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
            ++ +SL+ MY KCG   +   +FD +  +N   W   ISG+AS+G       +  +F  
Sbjct: 138 NVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNG---CTGEALDLFQS 194

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M    ++ WTA+I+G+V+ G+   A+ LF+EM+  D    +   L +V+   + L  L  
Sbjct: 195 MPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVL 254

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+Q+HGF +R      + + NAL+DMYSKC  +  AR VFE  +  +D I+W++I+ G  
Sbjct: 255 GRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITV-RDVISWTTILVGEA 313

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            HG+  E   LYN+M+  G KP+ +T VG++ AC  +GL+ +G ++++S+   Y +KP  
Sbjct: 314 QHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGV 373

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           +   C +D+L R+G L  A   I TMP EP  + WGAL+SA   H +++M      +L++
Sbjct: 374 QHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLE 433

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           L P++PS Y+ LSN+YA + +WD+VA++R +M +  ++K PG SW+    ++  F   + 
Sbjct: 434 LRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEV 493

Query: 516 AHPCSVSIYEMLDDLILIMRGAAASP 541
                  I   L++L+  MR     P
Sbjct: 494 PLDVGEEITCFLEELVSEMRKRGYVP 519


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 170/521 (32%), Positives = 282/521 (54%), Gaps = 38/521 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  A     +L +Q HS ++ +   S+ F+   LI  Y+ C     ++LVF  +
Sbjct: 214 TLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLM 273

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D+  +N++I+G+ +N    EA  LF  M+   +  +  TL+T+ K    ++   +  
Sbjct: 274 PERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCR 333

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            IH LS+K GF  D  + NSL+  Y KCG   +   +F+E P                  
Sbjct: 334 QIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESP------------------ 375

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSL 260
               +V            ++  +T+++  Y Q+G  +EAL L+LEMQ  DR I+P+    
Sbjct: 376 ----IV------------DLVLFTSLVTAYAQDGQGEEALRLYLEMQ--DRGIKPDSFVC 417

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            S+L  C+SL     GKQ+H   ++     D+   N+L++MY+KCGS++ A   F     
Sbjct: 418 SSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPV 477

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            +  ++WS+++ G   HG G EA+ L+ +M+ +G  P+ IT+V VL AC  +GL+ E   
Sbjct: 478 -RGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKH 536

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            +NS+   + I+P  E  AC++D+LGRAG+L+ A++ +  MP + +  +WGAL+ A+ +H
Sbjct: 537 YFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIH 596

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
            N ++ + A + L+ LEPE    +V L+N+YAS   WD VA +R +MKD  +KK PG SW
Sbjct: 597 KNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSW 656

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           + +  K + F V D++H  S  IY  LD+L  +++ A   P
Sbjct: 657 LEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVP 697



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 131/527 (24%), Positives = 243/527 (46%), Gaps = 77/527 (14%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+     + L L KQ H  ++  G  S+ FV+  L+  YA CG    ++ +F++I  + V
Sbjct: 17  LKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSV 76

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N+L + YV +  H EA+ LF +M  S + P++F+L+++  +   ++D   G  IHG 
Sbjct: 77  VSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGY 136

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG---------- 196
            IK+G+  D   AN+L+ MY K G   +  ++FDE+ + ++ SWN  I+G          
Sbjct: 137 LIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRA 196

Query: 197 -----------------------HASSGDFSLVVRSRRVFDQMKRRNV----YAWTAMIN 229
                                   A +G  +L    R++   + + ++    +    +I+
Sbjct: 197 LELLREMNKSGMCPNMFTLSSALKACAG-MALRELGRQLHSSLIKMDMGSDSFLGVGLID 255

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKV------------------------------S 259
            Y +   +D+A ++F  M  +D I  N V                              +
Sbjct: 256 MYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTT 315

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           L +VL + ++L      +QIH  +++     D  + N+LID Y KCG ++ A RVFE+S 
Sbjct: 316 LSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESP 375

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
              D + ++S+V+ Y   G+G EA+ LY +M   G KPD      +L+AC       +G 
Sbjct: 376 I-VDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGK 434

Query: 380 EIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           +++   ++  +    ++I A   +V+M  + G ++ A      +PV    S W A++   
Sbjct: 435 QVH---VHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVS-WSAMIGGL 490

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484
             HG  +     +K ++++    P N+++L ++  +      VAE +
Sbjct: 491 AQHGYGKEALQLFKQMLKVGV--PPNHITLVSVLCACNHAGLVAEAK 535



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 165/345 (47%), Gaps = 42/345 (12%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M+   +  ++F   ++ K     KDL +G  +HG+ +  GF  D  +ANSL+ +Y KCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
           F +  +LFD +P                                   R+V +W A+ + Y
Sbjct: 61  FGDARSLFDAIPD----------------------------------RSVVSWNALFSCY 86

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
           V +    EA+ LF +M L   I PN+ SL S++  C+ L     G++IHG+ I+   + D
Sbjct: 87  VHSDMHGEAVSLFHDMVLSG-IRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSD 145

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
               NAL+DMY+K G L+ A  VF++ +   D ++W++I++G  LH   H A+ L  +M 
Sbjct: 146 AFSANALVDMYAKVGILEDASSVFDEIA-KPDIVSWNAIIAGCVLHEYHHRALELLREMN 204

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
             G  P++ T+   L AC    L   G ++++S+I    +   + +   ++DM  +   +
Sbjct: 205 KSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKM-DMGSDSFLGVGLIDMYSKCNSM 263

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           D A    K MP E     W A++S    H  +E +D    SL  L
Sbjct: 264 DDARLVFKLMP-ERDMIAWNAVISG---HSQNE-EDEEAASLFPL 303



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 133/325 (40%), Gaps = 44/325 (13%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           +   T+   L+  A  ++  + +Q H+  L  G   + +V   LI  Y  CG    +  V
Sbjct: 311 FNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRV 370

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
           F      D+ L+ SL+  Y ++    EAL L+  M    + PD F  +++      +   
Sbjct: 371 FEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAY 430

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
             G  +H   +K GF+ D+   NSL++MY KCG   +    F  +P R + SW       
Sbjct: 431 EQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSW------- 483

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
                                      +AMI G  Q+G   EAL LF +M LK  + PN 
Sbjct: 484 ---------------------------SAMIGGLAQHGYGKEALQLFKQM-LKVGVPPNH 515

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
           ++LVSVL  C+    ++  K         F I     H       +ID+  + G L+ A 
Sbjct: 516 ITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYA----CMIDLLGRAGKLEAAM 571

Query: 313 RVFEDSSFNKDAITWSSIVSGYGLH 337
            +     F  +A+ W +++    +H
Sbjct: 572 ELVNKMPFQANALVWGALLGAARIH 596


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 181/521 (34%), Positives = 272/521 (52%), Gaps = 41/521 (7%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE-ALELFSN 111
           SN   S ++IT +   G    +  VF S+  K    +NS++ GY    G  + A +LF  
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG-LSIKIGFVVDVILANSLMSMYVKCG 170
           +      PD F+   +        D+    L    + +K     D    N+++S + + G
Sbjct: 63  I----PEPDIFSYNIMLACYLHNADVESARLFFDQMPVK-----DTASWNTMISGFSQNG 113

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV--------VRS------------- 209
              +   LF  MP RN  SWN  ISG+  SGD  L         VRS             
Sbjct: 114 MMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMK 173

Query: 210 -------RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                   + F++M  +N+  W AMI GY++N   +  L LF  M ++    PN  SL S
Sbjct: 174 FGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRM-VESGFRPNPSSLSS 232

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL  CS+L  L  GKQ+H    +  ++ +++   +L+ MY KCG L+ A ++F      K
Sbjct: 233 VLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP-QK 291

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
           D +TW++++SGY  HG G +A+ L++KM   G KPD IT V VLSAC  +G ++ G+E +
Sbjct: 292 DVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYF 351

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           NS++  Y ++   +   CVVD+LGR G+L  A+D IK MP +P  +I+G L+ A  +H N
Sbjct: 352 NSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKN 411

Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
            E+ + A K+L+ L+PE+ + YV L+N+YA+  RWD VA +R  MKD  + K+PG SWI 
Sbjct: 412 LELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIE 471

Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           +    H F   D+ HP    I+E L++L   MR A   P L
Sbjct: 472 VKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDL 512



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 146/341 (42%), Gaps = 50/341 (14%)

Query: 2   ILSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVST 59
           ++  AR  F ++  RN  S  A +  +++       L L KQ    +  +  + +    T
Sbjct: 114 MMDQARELFLVMPVRNSVSWNAMISGYVESG----DLDLAKQ----LFEVAPVRSVVAWT 165

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            +IT +   G+   ++  F  +  K++  +N++I GY++N      L+LF  M  S   P
Sbjct: 166 AMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRP 225

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           +  +L+++      +  L +G  +H L  K     ++    SL+SMY KCG   +   LF
Sbjct: 226 NPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLF 285

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
             MPQ++V +WN  ISG                                  Y Q+G  ++
Sbjct: 286 LVMPQKDVVTWNAMISG----------------------------------YAQHGAGEK 311

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK---ELNHDVSLCN 296
           AL LF +M+  + ++P+ ++ V+VL  C+    +  G +     +R    E   D   C 
Sbjct: 312 ALYLFDKMR-DEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTC- 369

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
            ++D+  + G L  A  + +   F   +  + +++    +H
Sbjct: 370 -VVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIH 409


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 177/565 (31%), Positives = 294/565 (52%), Gaps = 64/565 (11%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT---QSQLVFNSIQHKDVYLYN 90
           ++L+  KQ H+QI++  H ++PF  + L +  AL   PT    ++ +F+ +Q+    LYN
Sbjct: 107 KTLRHLKQVHAQIIT--HHNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYN 164

Query: 91  SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           SLI     +    EAL L+  M  S + PD  T   + K   E      G+L+H   +K 
Sbjct: 165 SLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKS 224

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG---HASSGDFSLVV 207
           GF  D  + +SL+ +Y           LF+    R+V SWN  I G   H   G   +V 
Sbjct: 225 GFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVF 284

Query: 208 -------------------------RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
                                     ++R+FD+M  RN+ +W +M+ G+V+ G++++A  
Sbjct: 285 DRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFG 344

Query: 243 LFLEMQLKD------------------------------RIEPNKVSLVSVLPTCSSLIG 272
           LF EM  +D                               ++P + ++VS+L  C+ L  
Sbjct: 345 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 404

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           L  G  +H +     +  +  +  AL+DMY+KCG +  A +VF ++  +KD + W++I++
Sbjct: 405 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF-NAMESKDVLAWNTIIA 463

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
           G  +HG   EA  L+ +M   G +P+ IT V +LSAC  +G+++EG ++ + + ++Y I+
Sbjct: 464 GMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIE 523

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
           P  E   CV+D+L RAG L+ A++ I TMP+EP+PS  GAL+    +HGN E+ ++  K 
Sbjct: 524 PKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKR 583

Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
           LI L+P +   Y+ LSN+YA++++WD   ++R +MK  G+ K PG S I + G  H F  
Sbjct: 584 LINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVA 643

Query: 513 ADKAHPCSVSIYEMLDDLILIMRGA 537
            D +HP S  IYE L+++   ++ A
Sbjct: 644 GDWSHPESNKIYEKLNEIHTRLKSA 668


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 178/548 (32%), Positives = 291/548 (53%), Gaps = 34/548 (6%)

Query: 2   ILSSARNTFALVTSRNYTSAT------VQHFLQVSATHRSLKLTKQSHSQILSLGHISNP 55
           ++  ARN F ++  RN  S T      VQ  + V A     ++ ++            N 
Sbjct: 94  MIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPER------------NE 141

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
              T +       G+   ++ +++ +  KDV    ++I G  +    +EA E+F  M   
Sbjct: 142 VSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRER 201

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
           NV     T  T+    G+ K ++V   L   +  K       +   S++  Y   G+  +
Sbjct: 202 NV----ITWTTMITGYGQNKRVDVARKLFEVMPEKTE-----VSWTSMLLGYTLSGRIED 252

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
               F+ MP + V + N  I    + G+   +V++RRVFDQM+ R+   W  MI  Y + 
Sbjct: 253 AEEFFEVMPMKPVIACNAMI---VALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERK 309

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G   EAL LF +MQ +  + P+  SL+S+L  C++L  L  G+Q+H   +R + + DV +
Sbjct: 310 GFELEALELFAQMQ-RQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYV 368

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            + L+ MY KCG L  A+ VF D   +KD I W+SI+SGY  HG G EA+ ++++M   G
Sbjct: 369 ASVLMTMYVKCGELVKAKLVF-DRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSG 427

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
           + P+ +T++ +L+AC   G + EGLEI+ S+ + + + PT E  +C VDMLGRAG++D+A
Sbjct: 428 TMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKA 487

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           ++ I +M ++P  ++WGAL+ A   H   ++ ++A K L ++EPEN   Y+ LS++ AS 
Sbjct: 488 MELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINASR 547

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD-KAHPCSVSIYEMLDDLILI 533
            +W  VAE+R  M+ + + K PGCSWI +  K H F+    + HP    I  ML+    +
Sbjct: 548 SKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAMILMMLEKTDGL 607

Query: 534 MRGAAASP 541
           +R A  SP
Sbjct: 608 LREAGYSP 615



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 179/412 (43%), Gaps = 50/412 (12%)

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
           I+  +  GQ  +++  F+S+++K +  +NS+++GY  N    EA ++F  M      P+ 
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEM------PER 77

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSI-KIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
             ++    +SG IK+    M+    ++ +I    +V+   +++  YV+ G   E   LF 
Sbjct: 78  NIVSWNGLVSGYIKNR---MIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFW 134

Query: 181 EMPQRNVGSWNVRISGHASSGDFS----------------------------LVVRSRRV 212
            MP+RN  SW V   G    G                                V  +R +
Sbjct: 135 RMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREI 194

Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
           FD+M+ RNV  WT MI GY QN  +D A  LF  M      E  +VS  S+L   +    
Sbjct: 195 FDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMP-----EKTEVSWTSMLLGYT---- 245

Query: 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           LSG  +             V  CNA+I    + G +  ARRVF D   ++D  TW  ++ 
Sbjct: 246 LSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVF-DQMEDRDNATWRGMIK 304

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
            Y   G   EA+ L+ +M   G +P   +++ +LS C     +  G +++  ++   +  
Sbjct: 305 AYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRC-QFD 363

Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
               + + ++ M  + G+L +A       P +    +W +++S    HG  E
Sbjct: 364 GDVYVASVLMTMYVKCGELVKAKLVFDRFPSK-DIIMWNSIISGYASHGLGE 414



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 143/307 (46%), Gaps = 32/307 (10%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           NS++S Y   G   E   +FDEMP+RN+ SWN  +SG+  +    ++  +R VF+ M  R
Sbjct: 52  NSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKN---RMIEEARNVFEIMPER 108

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           NV +WTAM+ GYVQ G + EA +LF  M      E N+VS   +        GL  G +I
Sbjct: 109 NVVSWTAMVKGYVQEGMVVEAELLFWRMP-----ERNEVSWTVMFG------GLIDGGRI 157

Query: 280 HGFAIRKEL--NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
                  ++    DV     +I    + G +D AR +F D    ++ ITW+++++GYG +
Sbjct: 158 DDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIF-DEMRERNVITWTTMITGYGQN 216

Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
            +   A  L+  M     +   ++   +L     SG I +  E +        + P   +
Sbjct: 217 KRVDVARKLFEVM----PEKTEVSWTSMLLGYTLSGRIEDAEEFFE-------VMPMKPV 265

Query: 398 CAC--VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            AC  ++  LG  G++ +A      M  +   + W  ++ A    G  E++ L   + +Q
Sbjct: 266 IACNAMIVALGEVGEIVKARRVFDQME-DRDNATWRGMIKAYERKG-FELEALELFAQMQ 323

Query: 456 LEPENPS 462
            +   PS
Sbjct: 324 RQGVRPS 330


>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 182/582 (31%), Positives = 304/582 (52%), Gaps = 47/582 (8%)

Query: 1   MILSSARNTFALVTSRNYTSATVQHF---LQVSATHRSLKLTKQSHSQILSLGHISNPFV 57
             L   RNT    T  N  S+T++ F   +    + +SLK  K  HSQ++        F+
Sbjct: 58  FFLVGERNTVMFHT--NDFSSTIEKFSSLISNCVSAKSLKHGKALHSQLIKTALFFETFL 115

Query: 58  STKLITAYALCGQP-------------------------------TQSQLVFNSIQHKDV 86
           +  LI  Y+ CG                                  Q+  +F+ +  +++
Sbjct: 116 ANGLIDLYSKCGCKESIHKAFDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNL 175

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMY--YSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
             YNSLI+G  ++  H EA++ F  M      +  D+FTL ++      +  +     +H
Sbjct: 176 VSYNSLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVH 235

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
           G++  +GF  ++IL N+L+  Y KCG+ +    LF  M +++  SW   +  +  +   S
Sbjct: 236 GVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRA---S 292

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
            +  + +VF++M  +   +W A+I+G+V+NG   EAL +F +M +K+ + P   + VSVL
Sbjct: 293 RIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQM-IKEGVLPRAQTFVSVL 351

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELN---HDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
             C+S   +  GKQ+H   IR   +    +V + NAL+DMY+KCG +  A  +FE     
Sbjct: 352 DACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHV 411

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD ++W+++++G+  +G+G +++ ++++M+    +P+ +T +GVLSAC  +GL+N GLE+
Sbjct: 412 KDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLEL 471

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI--WGALVSASVM 439
            +S+   Y +KP +   A ++D+LGR  +L+ A+  I+ +P E S  I  WGA++    +
Sbjct: 472 LDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLGGCRV 531

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           HGN E+   A ++L  LEPEN   YV LSN+YA+S RW     +R +MK+RGLKK P  S
Sbjct: 532 HGNLELARKAAEALFALEPENTGRYVMLSNIYAASGRWSDTNRIRNVMKERGLKKEPAFS 591

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            I +    H F   DK HP    I E    L+  M      P
Sbjct: 592 RIELKESRHEFVAKDKFHPQIGEIREANSKLVQHMMDVGYQP 633


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 161/479 (33%), Positives = 263/479 (54%), Gaps = 38/479 (7%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +N++++G  ++    EAL +   M    + PD  T++++ K       +  GM +H   +
Sbjct: 275 WNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFL 334

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS---- 204
           + G V D     +L+ MY KCG+      +FD +  RN+ +WN  ++GHA +G F     
Sbjct: 335 RHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALE 394

Query: 205 LVVRSRR----------------------------VFDQMKRR----NVYAWTAMINGYV 232
           LV R +R                            +  Q+K      NV +WT++I+G  
Sbjct: 395 LVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSWTSLISGSC 454

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
            NG+ +++   F EMQ KD ++P+ V+++ +L  C+ L  L  GK++H FA+R+  + D+
Sbjct: 455 HNGEYEDSFNFFKEMQ-KDGVQPSLVTMLVLLRACAGLALLKKGKELHCFALRRAYDCDM 513

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            +  ALIDMYSK GSL  A+R+F     NK+ +  +++++G  +HG+ HEA+ L++ +  
Sbjct: 514 VVGTALIDMYSKAGSLTSAKRIFGRIQ-NKNLVCCNAMLTGLAVHGQSHEAITLFHDLWR 572

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G KPD IT   +L+AC   GLI EG E ++++   Y + PT E  AC+VD+L R+G LD
Sbjct: 573 SGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACMVDLLARSGYLD 632

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A+  I+  PV+P  S+WGAL++   +HGN ++ ++A ++L +LEP N +NY+ + +LY 
Sbjct: 633 EAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRLEPYNSANYLMIMSLYE 692

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
             + +D    L+  MK RG+   PG SWI I    H F V    HP +  I E L  L+
Sbjct: 693 HEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVFEVDGSPHPETAEICEELMSLV 751



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 181/405 (44%), Gaps = 22/405 (5%)

Query: 37  KLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVFNSIQH----KDVYLYNS 91
           +L  Q HS  +  GH +  P V+  L    A  G+   S+ +          KD  L+N 
Sbjct: 80  RLAPQLHSLAVRAGHATREPRVACALSDLLARLGRGPSSRRLLEEADESEGGKDAVLWNK 139

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
            +    +    +EA+  F  M    V+ D + LA +    G       G  +H  ++K G
Sbjct: 140 QVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAVHAHALKAG 199

Query: 152 FV-VDVILANSLMSMYVKCGKFSECLN--LFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
            V    ++   L  MY +    +      L    P R+V +W+  +   A      LV  
Sbjct: 200 LVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSV-AWDAVV---ACCVRLGLVDD 255

Query: 209 SRRVFDQMKRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           +  +  +M R      +  W A+++G  ++G   EAL +   M L+  + P+  ++ S+L
Sbjct: 256 AMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRM-LEQGLWPDATTVSSLL 314

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            + ++   +  G ++H F +R  L  D     AL+DMY+KCG LDCARRVF D+  +++ 
Sbjct: 315 KSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVF-DTLEHRNL 373

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
            TW+S+V+G+   G+   A+ L  +M      P++ T  G+++    +GL ++ + +   
Sbjct: 374 ATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQ 433

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP---VEPS 426
            I    + P       ++      G+ + + +F K M    V+PS
Sbjct: 434 -IKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPS 477



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 123/293 (41%), Gaps = 44/293 (15%)

Query: 54  NPFVST--KLITAYALCGQPTQSQLVFNSIQH----KDVYLYNSLINGYVKNHGHNEALE 107
           +P V+T   LIT Y+L G  +Q+ L+   I+      +V  + SLI+G   N  + ++  
Sbjct: 405 DPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSWTSLISGSCHNGEYEDSFN 464

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
            F  M    V P   T+  + +    +  L  G  +H  +++  +  D+++  +L+ MY 
Sbjct: 465 FFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHCFALRRAYDCDMVVGTALIDMYS 524

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           K G  +    +F  +  +N+   N                                  AM
Sbjct: 525 KAGSLTSAKRIFGRIQNKNLVCCN----------------------------------AM 550

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL--SGGKQIHGFAIR 285
           + G   +G   EA+ LF ++  +  ++P+ ++  ++L  C S+ GL   G +       +
Sbjct: 551 LTGLAVHGQSHEAITLFHDL-WRSGLKPDSITFTALLTACRSM-GLITEGWEYFDNMETK 608

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
             +         ++D+ ++ G LD A  + E S  +  A  W ++++G  +HG
Sbjct: 609 YGVVPTAENYACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHG 661



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 112/277 (40%), Gaps = 45/277 (16%)

Query: 209 SRRVFDQMKR----RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           SRR+ ++       ++   W   +    + G+ DEA+  F EMQ +  +  +  +L  VL
Sbjct: 118 SRRLLEEADESEGGKDAVLWNKQVAMLAEAGEWDEAIGAFREMQARG-VAADGYALARVL 176

Query: 265 PTCSSLIGLSGGKQIHGFAIRKEL-----------------NHDVSLCNALI-------- 299
             C        GK +H  A++  L                   DV+   A++        
Sbjct: 177 HACGRAAARREGKAVHAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPR 236

Query: 300 ----DMYSKC--------GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
               D    C         +++ A R+  D        TW++++SG   HG+  EA+ + 
Sbjct: 237 SVAWDAVVACCVRLGLVDDAMELAGRMARDGP-EPTLATWNAVLSGCARHGRDREALAVL 295

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            +M+  G  PD  T+  +L +   +G++  G+E++   +  + + P       +VDM  +
Sbjct: 296 RRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFLR-HGLVPDAYTGTALVDMYAK 354

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
            G+LD A     T+    + + W +LV+     G  E
Sbjct: 355 CGRLDCARRVFDTLE-HRNLATWNSLVAGHAYAGQFE 390



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 29/280 (10%)

Query: 260 LVSVLPTCSSLIGLSG-------------GKQIHGFAIRK-ELNHDVSLCNALIDMYSKC 305
           L+S+L  C  +I L                 Q+H  A+R      +  +  AL D+ ++ 
Sbjct: 53  LLSLLRQCGDMICLDEEDTGSSLRAARRLAPQLHSLAVRAGHATREPRVACALSDLLARL 112

Query: 306 GSLDCARRVFED---SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362
           G    +RR+ E+   S   KDA+ W+  V+     G+  EA+  + +M   G   D   +
Sbjct: 113 GRGPSSRRLLEEADESEGGKDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYAL 172

Query: 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
             VL ACGR+    EG  ++   +    +     +   +  M      +  A   +    
Sbjct: 173 ARVLHACGRAAARREGKAVHAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRAT 232

Query: 423 VEPSPSIWGALVSASVMHG--NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
             P    W A+V+  V  G  +  M+     +    EP   +    LS      R  +A+
Sbjct: 233 PPPRSVAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREAL 292

Query: 481 AELRTMMKD---------RGLKKSPGCSWISIHG-KTHCF 510
           A LR M++            L KS   + +  HG + HCF
Sbjct: 293 AVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCF 332



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 91/217 (41%), Gaps = 2/217 (0%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           LK  K+ H   L   +  +  V T LI  Y+  G  T ++ +F  IQ+K++   N+++ G
Sbjct: 494 LKKGKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTG 553

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGFVV 154
              +   +EA+ LF +++ S + PD  T   +      +  +  G      +  K G V 
Sbjct: 554 LAVHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVP 613

Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVRISGHASSGDFSLVVRSRRVF 213
                  ++ +  + G   E + L +  P     S W   ++G +  G+  L   + R  
Sbjct: 614 TAENYACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNL 673

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
            +++  N   +  +++ Y      DEA  L   M+ +
Sbjct: 674 FRLEPYNSANYLMIMSLYEHEQMYDEADSLKYAMKAR 710


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 173/523 (33%), Positives = 277/523 (52%), Gaps = 9/523 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  A  ++ +    +H  ++ LG +   FV   L+ +YA  G    S+  F+ +
Sbjct: 112 TLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEM 171

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             ++V  +NS+INGY +     EA  LF  M    +  D+FTL ++        +L  G 
Sbjct: 172 VDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGK 231

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
           L+H   +  G  +D+ILAN+L+ MY KCG        FD MP +N  SW   +   A   
Sbjct: 232 LVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRA 291

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                  +R  F+Q+  +++ +W AMI+ YVQ G   EAL L+  M+L   + P++ +L 
Sbjct: 292 SID---AARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLG-LAPDEFTLA 347

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
           +VL  C  L  L+ GK IH   IR    N  V+L N+L+DMY++CG +D A  +F +   
Sbjct: 348 AVLSACGQLGDLASGKMIHD-CIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMP- 405

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
           +K+ I+W++I+    +HG+  +A++ +  MV     PD IT V +LSAC   GL+  G  
Sbjct: 406 SKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQY 465

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            + ++ + Y +KP  E  AC+VD+LGR GQL +A+D IK MP+ P   +WGAL+ A  +H
Sbjct: 466 YFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIH 525

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
           G+ ++     K L++LE  +   +V +SN+   + +W+ +  LR +M++ G+KK+ G S 
Sbjct: 526 GHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSS 585

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLI--LIMRGAAASP 541
           I  +   H        H  S  +Y   D L   L+   A A P
Sbjct: 586 IETNSNIHESGAEGIGHESSDDMYVGDDRLPHHLVFPNALAVP 628



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 211/448 (47%), Gaps = 77/448 (17%)

Query: 57  VSTKLITAYALCGQPT-----QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           V+++++ +Y  C  P       ++ +F+ I   D ++YNSLI  Y  +H   EAL L   
Sbjct: 43  VTSQILASY--CALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRG 100

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    + P++FTL  + K    ++     M+ HG+ +K+GFV  V + N+L+  Y   G 
Sbjct: 101 MIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGS 160

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             +    FDEM  RNV SWN  I+G+A +G+      +  +F+ M+R+ + A        
Sbjct: 161 LGDSRRFFDEMVDRNVVSWNSMINGYAQAGN---TREACSLFEGMRRQGLLA-------- 209

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
                                   ++ +LVS+L  CS+   L  GK +H   + +    D
Sbjct: 210 ------------------------DEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRID 245

Query: 292 VSLCNALIDMYSKCG-------------------------------SLDCARRVFEDSSF 320
           + L NAL+DMY KCG                               S+D AR  FE    
Sbjct: 246 LILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIP- 304

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            K  I+W++++S Y   G+ HEA+ LYN+M  LG  PD  T+  VLSACG+ G +  G  
Sbjct: 305 EKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKM 364

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           I++ + + +   P   +   ++DM  R GQ+D A+     MP +   S W A++ A  MH
Sbjct: 365 IHDCIRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVIS-WNAIIGALAMH 422

Query: 441 GNSEMQDLAYKSLI-QLEPENPSNYVSL 467
           G ++   + ++S++    P +   +V+L
Sbjct: 423 GRAQDALMFFRSMVFDAFPPDEITFVAL 450


>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
          Length = 559

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 159/478 (33%), Positives = 272/478 (56%), Gaps = 13/478 (2%)

Query: 24  QHFLQ----VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           Q FL     V A  RS+   KQ H+ ++  G  S  ++   LI  Y   G    ++ +F 
Sbjct: 13  QTFLSLLKSVDAERRSVG--KQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMFR 70

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
                D    N +++GYVK     +AL  F  M    +  D +T   +    G +K   +
Sbjct: 71  CAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKAVL 130

Query: 140 GMLIHGLSIKIGFVVD--VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
           G  +HG+ ++   V D  +IL+N+L+ MY KCG+ +  + +FDE  +R+  SWN  ++G 
Sbjct: 131 GRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRVFDEAGERDGISWNTMVAGF 190

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A++G   L   + + F +   R++ +W A++ GY +  +    ++LF +M L   + P+K
Sbjct: 191 ANAGLLDL---ASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDM-LASSVIPDK 246

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           V+ V+++   +    L+  + +HG+ +++    D  L +AL+DMY KCGS+  A  VFE 
Sbjct: 247 VTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGSIKLAYAVFE- 305

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
            + +KD   W++++SG   HG G  A+ L+ KM   G++P+ +T+V VLSAC  +GL +E
Sbjct: 306 KAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNGVTLVAVLSACSHAGLFDE 365

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G +I++++   + I+P  E   C+VD+L R+G+L  A+D  + MP++PS SIWG+++SAS
Sbjct: 366 GCKIFDTLKQRFNIEPGVEHFGCMVDLLARSGRLSDAVDLARRMPMKPSRSIWGSILSAS 425

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
               N+E+ ++A K L+ LEP     YV LSN+YA+  +W+   E+R  M+ +G++KS
Sbjct: 426 SACQNTEVAEIASKELLCLEPAEEGGYVLLSNMYAAEGQWNYSNEVRENMERKGVRKS 483


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 163/469 (34%), Positives = 262/469 (55%), Gaps = 40/469 (8%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T LIT YA  G    +Q +F+ I  KDV  +N++I+GY +   + EALELF  M  +NV 
Sbjct: 173 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 232

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           PD+ T+ ++     +   + +G  +H      GF  ++ + N+L+ +Y+KCG+      L
Sbjct: 233 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGL 292

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F+ +  ++V S                                  W  +I GY       
Sbjct: 293 FEGLSYKDVIS----------------------------------WNTLIGGYTHMNLYK 318

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN---HDVSLC 295
           EAL+LF EM L+    PN V+++S+LP C+ L  +  G+ IH + I K L    +  S  
Sbjct: 319 EALLLFQEM-LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY-INKRLKGVANASSHR 376

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355
            +LIDMY+KCG ++ A++VF DS  N+   +W++++ G+ +HG+ + A  ++++M     
Sbjct: 377 TSLIDMYAKCGDIEAAQQVF-DSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 435

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
           +PD IT VG+LSAC  SG+++ G  I+ S+   Y+I P  E   C++D+LG +G    A 
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAE 495

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
           + I TM +EP   IW +L+ A  M+ N E+ +   ++LI++EP+NP +YV LSN+YA++ 
Sbjct: 496 EMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAG 555

Query: 476 RWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           RW+ VA++R ++ D+G+KK PGCS I I    H F + DK HP +  IY
Sbjct: 556 RWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 604



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 239/454 (52%), Gaps = 24/454 (5%)

Query: 16  RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC----GQP 71
           RN+ S ++ H        ++L+  +  H+Q++  G  +  +  +KLI    L     G P
Sbjct: 1   RNHPSLSLLH------NCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLP 54

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
                VF +IQ  ++ ++N++  G+  +     AL L+  M    + P+ +T   + K  
Sbjct: 55  YAIS-VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSC 113

Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
            + K    G  IHG  +K+G+ +D+ +  SL+SMYV+ G+  +   +FD+   R+V S+ 
Sbjct: 114 AKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYT 173

Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
             I+G+AS G    +  ++++FD++  ++V +W AMI+GY + G+  EAL LF EM +K 
Sbjct: 174 ALITGYASKG---YIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEM-MKT 229

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            + P++ ++VSV+  C+    +  G+Q+H +        ++ + NALID+Y KCG ++ A
Sbjct: 230 NVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 289

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
             +FE  S+ KD I+W++++ GY       EA+LL+ +M+  G  P+ +T++ +L AC  
Sbjct: 290 CGLFEGLSY-KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAH 348

Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICA---CVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
            G I  G  I+  V    R+K      +    ++DM  + G ++ A     ++ +  S S
Sbjct: 349 LGAIEIGRWIH--VYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLS 405

Query: 429 IWGALVSASVMHG--NSEMQDLAYKSLIQLEPEN 460
            W A++    MHG  N+     +     ++EP++
Sbjct: 406 SWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDD 439


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 168/490 (34%), Positives = 270/490 (55%), Gaps = 37/490 (7%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           HS  +  G  S  FVS KLI  YA  G     Q VF+ +  +D+  +NS+I  Y  N   
Sbjct: 270 HSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQP 329

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG-FVVDVILANS 161
             A+ LF  M  S + PD  TL +++ +  ++ ++     + G +++ G F+ D+ + N+
Sbjct: 330 LRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNA 389

Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
           ++ MY K G                                  LV  +R VF+ +  ++V
Sbjct: 390 VVVMYAKLG----------------------------------LVDSARAVFNWLPNKDV 415

Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
            +W  +I+GY QNG   EA+ ++  M+ +   I  N+ + VSVLP CS    L  G ++H
Sbjct: 416 ISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLH 475

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
           G  ++  L  DV +  +L DMY KCG LD A  +F       +++ W+++++ +G HG G
Sbjct: 476 GRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHGHG 534

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            +AV+L+ +M+  G KPD IT V +LSAC  SGL++EG   +  +   Y I P+ +   C
Sbjct: 535 EKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGC 594

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+ GRAGQL+ AL+FIK+MP++P  SIWGAL+SA  +HGN ++  +A + L ++EPE+
Sbjct: 595 MVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEH 654

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
              +V LSN+YAS+ +W+ V E+R++   +GL+K+PG S + +  K   F   ++ HP  
Sbjct: 655 VGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMY 714

Query: 521 VSIYEMLDDL 530
             +Y  L  L
Sbjct: 715 EEMYRELTAL 724



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 195/408 (47%), Gaps = 45/408 (11%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  K  H++++    I N  +S KL+  Y   G    ++  F+ I ++DVY +N +I+
Sbjct: 66  NLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMIS 125

Query: 95  GYVKNHGHNEALELFS-NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
           GY +    +E +  FS  M  S + PD  T  ++ K    + D   G  IH L++K GF+
Sbjct: 126 GYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFM 182

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            DV +A SL+ +Y + G                                   VV +R +F
Sbjct: 183 WDVYVAASLIHLYCRYGA----------------------------------VVNARILF 208

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
           D+M  R++ +W AMI+GY Q+G+  EAL L   ++  D      V++VS+L  C+     
Sbjct: 209 DEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMD-----SVTVVSLLSACTEAGDF 263

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           + G  IH ++I+  L  ++ + N LID+Y++ GSL   ++VF D  + +D I+W+SI+  
Sbjct: 264 NRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVF-DRMYVRDLISWNSIIKA 322

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y L+ +   A+LL+ +M     +PD +T++ + S   + G I     +    +       
Sbjct: 323 YELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLE 382

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
              I   VV M  + G +D A      +P +   S W  ++S    +G
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVIS-WNTIISGYAQNG 429



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 12/183 (6%)

Query: 28  QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
           Q  A  + +KL    H ++L  G   + FV T L   Y  CG+   +  +F  I   +  
Sbjct: 464 QAGALRQGMKL----HGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSV 519

Query: 88  LYNSLI--NGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG-MLI 143
            +N+LI  +G+   HGH E A+ LF  M    V PD  T  T+         ++ G    
Sbjct: 520 PWNTLIACHGF---HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCF 576

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGD 202
             +    G    +     ++ +Y + G+    LN    MP Q +   W   +S     G+
Sbjct: 577 EMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGN 636

Query: 203 FSL 205
             L
Sbjct: 637 VDL 639


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 169/508 (33%), Positives = 286/508 (56%), Gaps = 25/508 (4%)

Query: 36  LKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVFNSI-QH-KDVYLYNSL 92
           L + ++ H+ +L    ++ N FV++ L+  YA   Q + ++ VF+ + +H + + ++N++
Sbjct: 276 LGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAM 335

Query: 93  INGYVKNHGHNE-ALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           I GY ++ G +E A+ELFS M   +  +P + T+A +       +       +HG  +K 
Sbjct: 336 ICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKR 395

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
               +  + N+LM MY + G+  E   +F  +  R++ SWN  I+G    G   L+  + 
Sbjct: 396 DMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQG---LISEAF 452

Query: 211 RVFDQMKRRNVYA-WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           ++  +M+  +  A    M+ G   + D               R  PN ++L+++LP C+ 
Sbjct: 453 QLVREMQLPSSAASGETMLEGDDTSVD-------------GQRCMPNNITLMTLLPGCAV 499

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L   + GK+IHG+A+R  L  D+++ +AL+DMY+KCG L  AR VF D    ++ ITW+ 
Sbjct: 500 LAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVF-DRLPRRNVITWNV 558

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
           ++  YG+HG G EA+ L+++MV  G + P+ +T +  L+AC  SGL++ GLE++  +   
Sbjct: 559 LIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRD 618

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQD 447
           Y  +PT  + ACVVD+LGRAG+LD A   I +M P E   S W  ++ A  +H N ++  
Sbjct: 619 YGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGR 678

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
           +A + L +LEP+  S+YV L N+Y+++  W+   E+R MM+ RG+ K PGCSWI + G  
Sbjct: 679 IAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAI 738

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMR 535
           H F   + AHP S  ++  +D L   MR
Sbjct: 739 HRFMAGESAHPESAQVHAHMDALWERMR 766



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 187/428 (43%), Gaps = 49/428 (11%)

Query: 27  LQVSATHRSLKLTKQSHSQIL--SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH- 83
           ++ +A  R  + T+  H   L  +L H   P VS  L+TAYA CG    +  +F +    
Sbjct: 55  IKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATPPD 114

Query: 84  -KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL--NVG 140
            +D   YNSLI+          AL+   +M  ++     FTL ++      + D    +G
Sbjct: 115 LRDAVSYNSLISALCLFRRWGHALDALRDML-ADHEVSSFTLVSVLLACSHLADQGHRLG 173

Query: 141 MLIHGLSIKIGFV---VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
              H  ++K GF+    +    N+L+SMY + G   +   LF               S  
Sbjct: 174 REAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLF--------------FSSG 219

Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
           A  GD                  +  W  MI+  VQ G  +EA+ +  +M +   + P+ 
Sbjct: 220 AGVGD------------------LVTWNTMISLLVQGGRCEEAVQVLYDM-VALGVRPDG 260

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           V+  S LP CS L  L  G+++H F ++  +L  +  + +AL+DMY+    +  ARRVF+
Sbjct: 261 VTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFD 320

Query: 317 -DSSFNKDAITWSSIVSGYGLHGK-GHEAVLLYNKMVC-LGSKPDIITIVGVLSACGRSG 373
                 +    W++++ GY  HG    EA+ L+++M    G  P   T+ GVL AC RS 
Sbjct: 321 MVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSE 380

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
           +   G E  +  +    +     +   ++DM  R G++D A      + +    S W  L
Sbjct: 381 VFT-GKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVS-WNTL 438

Query: 434 VSASVMHG 441
           ++  ++ G
Sbjct: 439 ITGCIVQG 446



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 153/370 (41%), Gaps = 52/370 (14%)

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV--VDVILANSLMSMYVKCGKFSECLN 177
           D F L    K +  ++D      IHG S++   +      ++N+L++ Y +CG     L 
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 178 LFDEMPQ--RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
           LF   P   R+  S+N  IS         L  R     D ++                  
Sbjct: 107 LFAATPPDLRDAVSYNSLISA------LCLFRRWGHALDALRD----------------- 143

Query: 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI--GLSGGKQIHGFAIRK---ELNH 290
                        L D  E +  +LVSVL  CS L   G   G++ H FA++    +   
Sbjct: 144 ------------MLADH-EVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGR 190

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNK 349
           +    NAL+ MY++ G +D A+R+F  S     D +TW++++S     G+  EAV +   
Sbjct: 191 ERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYD 250

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           MV LG +PD +T    L AC R  L+  G E++  V+    +   + + + +VDM     
Sbjct: 251 MVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNE 310

Query: 410 QLDRALDFIKTMPVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQLEPE---NPSNYV 465
           Q+  A      +P       +W A++     HG   M + A +   ++E E    PS   
Sbjct: 311 QVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGG--MDEEAIELFSRMEAEAGCAPSETT 368

Query: 466 SLSNLYASSR 475
               L A +R
Sbjct: 369 MAGVLPACAR 378


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 176/492 (35%), Positives = 278/492 (56%), Gaps = 15/492 (3%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H  ++ L   SN F+   LI  Y  CG    ++ VF+ +  +D   YNS+I+GYVK+
Sbjct: 145 KQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKS 204

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV---DV 156
              + A ELF +M       +D  L + + + G       G+   GL++++   +   D+
Sbjct: 205 GTIDLARELFDSM-----PLEDKNLISWNSMLGGFAQTKDGI---GLALELFEKMPERDL 256

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
           +  N+++  + KCG+     +LF+ MP+R+V SW+  I G+A  GD  +   +R +FD+M
Sbjct: 257 VSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKV---ARTLFDEM 313

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
             ++V A+  ++ GY QNG   EAL +F EMQ +  + P++ +LV  L   S L  +   
Sbjct: 314 PDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKA 373

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
             +H + +   ++    +  ALIDMYSKCGS++ A  +F D    K    W++++SG   
Sbjct: 374 ASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIF-DGVDQKGIDHWNAMISGMAR 432

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           +G G  A  +  +M  L  KPD IT +GVL+AC  +GL+ EGL  +  +   ++++P  +
Sbjct: 433 NGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQ 492

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
              C+VD+LG+AG ++ AL FI+ MP+EP+  IW  L+SA   H N  + +L  K L+ +
Sbjct: 493 HYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTM 552

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           +  N S+YV LSN+YA    W A +++R MMK + L K PGCSWI + G  H F V DK+
Sbjct: 553 DSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELEGVVHEFLVRDKS 612

Query: 517 HPCSVSIYEMLD 528
           HP    IY +LD
Sbjct: 613 HPYVSEIYSVLD 624



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 208/434 (47%), Gaps = 37/434 (8%)

Query: 41  QSHSQILSLGHISNPFVSTKLI--------------TAYALCGQPTQSQLVFNSIQHKDV 86
           Q H++I+  G++ N  ++TK+I                Y    +    ++  N +   D 
Sbjct: 32  QVHARIIKTGYLKNSSLTTKIILNSISSPHKPLVEFARYVFFTRYAVQRIRRNHLD-DDP 90

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
           +L+N++I  Y   +    AL LF  M  +    D F+ + I K    +  +  G  IHGL
Sbjct: 91  FLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIHGL 150

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            +K+    ++ L N L++MY++CG       +FD MP ++  S+N  I G+  SG   L 
Sbjct: 151 LMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDL- 209

Query: 207 VRSRRVFDQM--KRRNVYAWTAMINGYVQNGD-LDEALVLFLEMQLKDRIEPNKVSLVSV 263
             +R +FD M  + +N+ +W +M+ G+ Q  D +  AL LF +M  +D +  N  +++  
Sbjct: 210 --ARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVSWN--TIIGG 265

Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
              C  +      +  H    R      +S  N +ID Y+K G +  AR +F++   +KD
Sbjct: 266 FAKCGRI------EFAHSLFNRMPKRDVISWSN-MIDGYAKLGDIKVARTLFDEMP-DKD 317

Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIY 382
            + +++I++GY  +G   EA+ ++++M    +  PD  T+V  LSA  + G + +   ++
Sbjct: 318 VVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMH 377

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           N  +    I  T ++   ++DM  + G ++ A+     +  +     W A++S    +G 
Sbjct: 378 NYFLEN-GISVTGKVAVALIDMYSKCGSIENAILIFDGVD-QKGIDHWNAMISGMARNG- 434

Query: 443 SEMQDLAYKSLIQL 456
             +  LA+  L+++
Sbjct: 435 --LGKLAFGMLLEM 446


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 171/494 (34%), Positives = 276/494 (55%), Gaps = 15/494 (3%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKNHGHNEA-LELFSNMYYSN 116
           ++ I A +  G  + +  +F SI H  D+YLYN++I     +  H +A + L++N+  + 
Sbjct: 14  SRFIHACSSLGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPKASIFLYNNIQLAG 73

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC- 175
           + PD ++     K       +  G  +H  SI+ G   D+ +  + + MY   G    C 
Sbjct: 74  LRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICD 133

Query: 176 -LNLFD--EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
              +FD   M   +V  WN  ++G+A  GD   +  +R +F++M +RNV +WTA+I GY 
Sbjct: 134 ARKMFDGMSMSTGDVALWNAMLNGYAKHGD---LCNARDLFERMPQRNVISWTALITGYA 190

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-KELNHD 291
           Q     +A+ LF  MQL++ +EP++++++  L  C+ L  L  G+ I  +  R   L  +
Sbjct: 191 QANRPHDAIALFRRMQLEN-VEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTN 249

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
           + L NALIDMY+K G +  A +VFE+ + +K  ITW+++++G  LHG G EA+ ++++M 
Sbjct: 250 IPLNNALIDMYAKSGDIKSALQVFENMN-HKTIITWTTMIAGLALHGLGTEALEMFSRME 308

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
               KP+ IT + +LSAC   GL+  G   +N +I+ Y I+P  E   C++D+LGRAG L
Sbjct: 309 RARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHL 368

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471
             A   +  MP EP+  IWG+L++A   HG+ E+ +LA + L++LEP+N  NY  LSN+Y
Sbjct: 369 KEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIY 428

Query: 472 ASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
           AS  RW+    +R +M D G+KK PG S I ++ + H F   + +H     I E+L    
Sbjct: 429 ASRGRWNESRVVRKVMWDAGVKKMPGGSLIEVNNRVHEFIAGEISHSQFDRIQEVLSK-- 486

Query: 532 LIMRGAAASPHLGK 545
            I R    S H  K
Sbjct: 487 -INRQLGLSQHFEK 499



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 2/193 (1%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           +N  ++  LI  YA  G    +  VF ++ HK +  + ++I G   +    EALE+FS M
Sbjct: 248 TNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRM 307

Query: 113 YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI-KIGFVVDVILANSLMSMYVKCGK 171
             + V P+D T   I      +  +  G       I + G    +     ++ +  + G 
Sbjct: 308 ERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGH 367

Query: 172 FSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
             E   L  +MP + N   W   ++   + GD  L   + +   +++  N   +  + N 
Sbjct: 368 LKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNI 427

Query: 231 YVQNGDLDEALVL 243
           Y   G  +E+ V+
Sbjct: 428 YASRGRWNESRVV 440


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 160/464 (34%), Positives = 274/464 (59%), Gaps = 9/464 (1%)

Query: 43   HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
            H+++L LG  S+ FVS  LI  YA   +   ++ VF+ +  +D+  +NSLI GY +   +
Sbjct: 818  HARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRY 877

Query: 103  NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV--GMLIHGLSIKIGFVVDVILAN 160
            +E L +F  M  ++V  D  T+  +      + +  V   M+ +    K+   VDV L N
Sbjct: 878  SEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVE--VDVYLGN 935

Query: 161  SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
            +L+ MY +         +FD M  RN+ SWN  I G+  +G+   +V +R++FD M  R+
Sbjct: 936  TLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGN---LVAARKLFDDMPHRD 992

Query: 221  VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
            V +WT+MI+ Y Q G   +A+ LF EM +  +++P+++++ SVL  C+ +  L  G+ +H
Sbjct: 993  VISWTSMISSYSQAGQFGKAVRLFQEMMVT-KVKPDEITVASVLSACAHIGALDVGEAVH 1051

Query: 281  GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
             +  + ++N D+ + NALIDMY KCG+++    VFE+    +D+++W+S+++G  ++G  
Sbjct: 1052 EYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMG-KRDSVSWTSVIAGLAVNGSA 1110

Query: 341  HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
              A+ L++ M+  G +P   T VGVL AC  +G++++GLE + S+   Y + P  +   C
Sbjct: 1111 DSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGC 1170

Query: 401  VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
            VVD+L R+G L RA +FIK MP++P   +W  L+SAS +HGN  + ++A K L++ +P N
Sbjct: 1171 VVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSN 1230

Query: 461  PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
              NY+  SN YA S RW+ V ++R +M++  + K    S + I+
Sbjct: 1231 SGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEIN 1274



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 211/434 (48%), Gaps = 28/434 (6%)

Query: 25   HFLQVSATHRSLKLTKQ-------SHSQILSLGHISNPFVSTKLITAYALCGQPT---QS 74
            HFL        L+  ++       S S ++     ++P     L+ +YAL   PT   ++
Sbjct: 692  HFLDFDELSSELRTPRRFIFSLSCSFSNMIKELLPTDPISIFNLLKSYAL--SPTNILKA 749

Query: 75   QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI 134
              +F  I    +  +N +I G+ + +   EA+  ++ MY   +  ++ T   + K    I
Sbjct: 750  NELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACARI 809

Query: 135  KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
             +++    +H   +K+GF  D+ ++N+L+  Y    +      +FDEM +R++ SWN  I
Sbjct: 810  SNVSC-TTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLI 868

Query: 195  SGHASSGDFSLVVRSRRVFDQMKRRNVYA-WTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
             G+     +S V+    VF++M+  +V      M+   +    L E  V+   ++    I
Sbjct: 869  CGYGRCRRYSEVL---VVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEY---I 922

Query: 254  EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR---KELNHDVSLCNALIDMYSKCGSLDC 310
            E NKV +   L   ++LI + G + +   A R   +  + ++   NA+I  Y K G+L  
Sbjct: 923  EENKVEVDVYLG--NTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVA 980

Query: 311  ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
            AR++F+D   ++D I+W+S++S Y   G+  +AV L+ +M+    KPD IT+  VLSAC 
Sbjct: 981  ARKLFDDMP-HRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACA 1039

Query: 371  RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
              G ++ G E  +  I  Y +     +   ++DM  + G +++ L   + M    S S W
Sbjct: 1040 HIGALDVG-EAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVS-W 1097

Query: 431  GALVSASVMHGNSE 444
             ++++   ++G+++
Sbjct: 1098 TSVIAGLAVNGSAD 1111


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 169/514 (32%), Positives = 282/514 (54%), Gaps = 6/514 (1%)

Query: 30  SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
           SA  +S  L K+ H+QI+  G   +  +   L+ AY  CG    +  +F+++  +D   +
Sbjct: 13  SAARQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAW 72

Query: 90  NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV--GMLIHGLS 147
            SL+     ++  + AL +  ++  +   PD F  A++ K    +  L+V  G  +H   
Sbjct: 73  ASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARF 132

Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
               F  D ++ +SL+ MY K G       +FD +   N  SW   ISG+A SG      
Sbjct: 133 FLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGR---KF 189

Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
            + R+F Q   RN++AWTA+I+G VQ+G+  +A  LF+EM+ +     + + L SV+  C
Sbjct: 190 EAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGAC 249

Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
           ++L     GKQ+HG  I       + + NALIDMY+KC  L  A+ +F +    KD ++W
Sbjct: 250 ANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMC-RKDVVSW 308

Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
           +SI+ G   HG+  EA+ LY++MV  G KP+ +T VG++ AC  +GL+++G  ++ +++ 
Sbjct: 309 TSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVE 368

Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
            + I P+ +   C++D+  R+G LD A + I+TMPV P    W AL+S+   HGN++M  
Sbjct: 369 DHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAV 428

Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
                L+ L+PE+PS+Y+ LSN+YA +  W+ V+++R +M     KK+PG S I +   +
Sbjct: 429 RIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGS 488

Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           H F   + +HP    I  ++ +L   MR    +P
Sbjct: 489 HVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAP 522


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 169/495 (34%), Positives = 269/495 (54%), Gaps = 37/495 (7%)

Query: 53  SNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
           S+P+ ++ L+  Y  C +P  ++  F+ I   +  +  ++ +GYV+N+    +LELF  M
Sbjct: 127 SDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAM 186

Query: 113 YYSNVSP--DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
             S+ +   D+         S  + D  V   +H L  KIGF                  
Sbjct: 187 IASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF------------------ 228

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
                        +RN G  N  +  +A  G   L V +R+VFD M+R +V +W +MI  
Sbjct: 229 -------------ERNAGVVNTMLDSYAKGGSRDLEV-ARKVFDTMER-DVVSWNSMIAL 273

Query: 231 YVQNGDLDEALVLFLEM-QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           Y QNG   EA+ L+ +M  +   I+ N V+L +VL  C+    +  GK+IH   +R  L 
Sbjct: 274 YAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLE 333

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            +V +  +++DMYSKCG ++ A R F      K+ ++WS++++GYG+HG+G EA+ ++ +
Sbjct: 334 ENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMHGRGQEALEIFTE 392

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
           M   G +P+ IT + VL+AC  +GL++EG   YN++   + I+   E   C+VD+LGRAG
Sbjct: 393 MKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAG 452

Query: 410 QLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469
            LD A   IK M V+P  +IWGAL+SA  +H N E+ +++ K L +L+  N   YV LSN
Sbjct: 453 CLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSN 512

Query: 470 LYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDD 529
           +YA +R W  V  +R ++K R ++K PG S   + GK + F V DK+HP  + IY  L+ 
Sbjct: 513 IYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEK 572

Query: 530 LILIMRGAAASPHLG 544
           L+  M+ A   P+ G
Sbjct: 573 LLERMQEAGYVPNTG 587


>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
          Length = 421

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 162/449 (36%), Positives = 244/449 (54%), Gaps = 44/449 (9%)

Query: 83  HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
            K+V L+ S+INGY+ N       +L S   Y ++SP+                      
Sbjct: 3   EKNVVLWTSMINGYLLNK------DLVSARRYFDLSPER--------------------- 35

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
                       D++L N+++S Y++ G   E  +LFD+MP R+V SWN  + G+A+ GD
Sbjct: 36  ------------DIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGD 83

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                   RVFD M  RNV++W  +I GY QNG + E L  F  M  +  + PN  ++  
Sbjct: 84  ME---ACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTL 140

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNH-DVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           VL  C+ L     GK +H +      N  DV++ NALIDMY KCG+++ A  VF+     
Sbjct: 141 VLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIK-R 199

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D I+W+++++G   HG G EA+ L+++M   G  PD +T VGVL AC   GL+ +GL  
Sbjct: 200 RDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAY 259

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +NS+   + I P  E C CVVD+L RAG L +A++FI  MPV+    IW  L+ AS ++ 
Sbjct: 260 FNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYK 319

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
             ++ ++A + LI+LEP NP+N+V LSN+Y  + R+D  A L+  M+D G KK  G SWI
Sbjct: 320 KVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWI 379

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
                   F  + + HP +  +  +L +L
Sbjct: 380 ETDDGLVKFYSSGEKHPRTEELQRILREL 408



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 122/286 (42%), Gaps = 46/286 (16%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSP 119
           ++  YA  G     + VF+ +  ++V+ +N LI GY +N   +E L  F  M    +V P
Sbjct: 74  VLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVP 133

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-VVDVILANSLMSMYVKCGKFSECLNL 178
           +D T+  +     ++   + G  +H     +G+  VDV + N+L+ MY KCG     + +
Sbjct: 134 NDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEV 193

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F  + +R++ SWN                                   MING   +G   
Sbjct: 194 FKGIKRRDLISWN----------------------------------TMINGLAAHGHGT 219

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG-----KQIHGFAIRKELNHDVS 293
           EAL LF EM+    I P+KV+ V VL  C  +  +  G          F+I  E+ H   
Sbjct: 220 EALNLFHEMK-NSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEH--- 275

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
            C  ++D+ S+ G L  A           DA+ W++++    ++ K
Sbjct: 276 -CGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKK 320



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVF 78
            AT+   L   A   +    K  H    +LG+   +  V   LI  Y  CG    +  VF
Sbjct: 135 DATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVF 194

Query: 79  NSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATI 127
             I+ +D+  +N++ING +  HGH  EAL LF  M  S +SPD  T   +
Sbjct: 195 KGIKRRDLISWNTMING-LAAHGHGTEALNLFHEMKNSGISPDKVTFVGV 243


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 166/488 (34%), Positives = 260/488 (53%), Gaps = 35/488 (7%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
            ++ KLI A A      Q+ L+F  +   +++ +N+ +    +N     A++ F++   S
Sbjct: 25  LIAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSS 84

Query: 116 --NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
               +PD+FT  ++ K    +  +  G  IH +  K GF  ++ + NSL+ MY K G   
Sbjct: 85  PNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLL 144

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
              +LFDEM  R+                                RNV  W AMI GY Q
Sbjct: 145 LARHLFDEMFVRD--------------------------------RNVVCWNAMIAGYAQ 172

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           N    +A+ +F  MQ    + PN V+LVSVLP C+ L  L  GK I GF  R+E+   + 
Sbjct: 173 NEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLF 232

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L NAL DMY+KCG +  ARRVF      +D I+WS I+ G  ++G   EA   + +M+  
Sbjct: 233 LGNALADMYAKCGCITEARRVFNKME-ERDVISWSIIICGLAMYGHADEAFGCFYEMLDC 291

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G KP+ +  +G+L+AC  +GL+ +GL  +N++   Y + P  E   CVVD+L RAG+LD+
Sbjct: 292 GEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDK 351

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A D I +MP++P+  IWGAL+    ++ +S       + +++L+ ++  +YV L+N+Y+S
Sbjct: 352 AEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSS 411

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
             R D  A+ R  M++ G+ K+PGCSWI +    H F + D +HP S  IY M+ +L+  
Sbjct: 412 MGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWK 471

Query: 534 MRGAAASP 541
           M+ A   P
Sbjct: 472 MKLAGYKP 479



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 46/314 (14%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYV 97
           ++ H+ +   G  SN FV   LI  Y   G    ++ +F+   ++ ++V  +N++I GY 
Sbjct: 112 QKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYA 171

Query: 98  KNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           +N  +++A+E+F  M  +  V P+D TL ++      +  L++G  I G   +    + +
Sbjct: 172 QNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGL 231

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            L N+L  MY KCG  +E   +F++M +R+V SW++                        
Sbjct: 232 FLGNALADMYAKCGCITEARRVFNKMEERDVISWSI------------------------ 267

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
                     +I G    G  DEA   F EM L    +PN V  + +L  C+   GL   
Sbjct: 268 ----------IICGLAMYGHADEAFGCFYEM-LDCGEKPNDVVFMGLLTACTH-AGLV-K 314

Query: 277 KQIHGF-AIRKE--LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           K ++ F  + KE  ++  V     ++D+ S+ G LD A  +        + I W +++ G
Sbjct: 315 KGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGG 374

Query: 334 ---YGLHGKGHEAV 344
              Y   G+G   V
Sbjct: 375 CRIYRDSGRGQRVV 388


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 161/499 (32%), Positives = 278/499 (55%), Gaps = 40/499 (8%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALC---GQPTQSQLVFNSIQHKDVYLYNSL 92
           L L KQ HS+++ LG   +  V   L+  YA C   G    S+ VF  +   +V  + ++
Sbjct: 265 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 324

Query: 93  INGYVKN-HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I  YV++     EA+ELF  M   ++ P+ F+ +++ K  G + D   G  ++  ++K+G
Sbjct: 325 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 384

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
                 + NSL+SMY + G+  +                                  +R+
Sbjct: 385 IASVNCVGNSLISMYARSGRMED----------------------------------ARK 410

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
            FD +  +N+ ++ A+++GY +N   +EA +LF E+     I  +  +  S+L   +S+ 
Sbjct: 411 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA-DTGIGISAFTFASLLSGAASIG 469

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            +  G+QIHG  ++     +  +CNALI MYS+CG+++ A +VF +   +++ I+W+S++
Sbjct: 470 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMI 528

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           +G+  HG    A+ +++KM+  G+KP+ IT V VLSAC   G+I+EG + +NS+   + I
Sbjct: 529 TGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 588

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
            P  E  AC+VD+LGR+G L  A++FI +MP+     +W  L+ A  +HGN+E+   A +
Sbjct: 589 VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAE 648

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            +++ EP++P+ Y+ LSNL+AS+ +W  V ++R  MK+R L K  GCSWI +  + H F 
Sbjct: 649 MILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFH 708

Query: 512 VADKAHPCSVSIYEMLDDL 530
           V + +HP +  IY+ LD L
Sbjct: 709 VGETSHPQAWQIYQELDQL 727



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 189/393 (48%), Gaps = 37/393 (9%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ +  +++  +  +I  + +     +A++LF +M  S   PD FT +++     E+  
Sbjct: 205 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 264

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L +G  +H   I++G  +DV +  SL+ MY KC                           
Sbjct: 265 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC--------------------------- 297

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD-EALVLFLEMQLKDRIEP 255
            A+ G    V  SR+VF+QM   NV +WTA+I  YVQ+G+ D EA+ LF +M +   I P
Sbjct: 298 -AADGS---VDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM-ISGHIRP 352

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N  S  SVL  C +L     G+Q++ +A++  +     + N+LI MY++ G ++ AR+ F
Sbjct: 353 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 412

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D  F K+ +++++IV GY  + K  EA LL+N++   G      T   +LS     G +
Sbjct: 413 -DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAM 471

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            +G +I+  ++     K    IC  ++ M  R G ++ A      M      S W ++++
Sbjct: 472 GKGEQIHGRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS-WTSMIT 529

Query: 436 ASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSL 467
               HG  +   ++ +K L      N   YV++
Sbjct: 530 GFAKHGFATRALEMFHKMLETGTKPNEITYVAV 562



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 202/425 (47%), Gaps = 54/425 (12%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           L  A +T  L+T +N      T    L+     R+ +L K  H +++  G   +  V   
Sbjct: 25  LHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNT 84

Query: 61  LITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           LI+ Y+ CG    ++L+F  + +K D+  ++++++ +  N    +A+  F +M      P
Sbjct: 85  LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 144

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSLMSMYVK-CGKFSECLN 177
           +++  A + +         VG +I+G  +K G++  DV +   L+ M+VK  G       
Sbjct: 145 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 204

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           +FD+MP+RN+ +W                                  T MI  + Q G  
Sbjct: 205 VFDKMPERNLVTW----------------------------------TLMITRFAQLGCA 230

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
            +A+ LFL+M+L   + P++ +  SVL  C+ L  L+ GKQ+H   IR  L  DV +  +
Sbjct: 231 RDAIDLFLDMELSGYV-PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 289

Query: 298 LIDMYSKC---GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK-GHEAVLLYNKMVCL 353
           L+DMY+KC   GS+D +R+VFE      + ++W++I++ Y   G+   EA+ L+ KM+  
Sbjct: 290 LVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITAYVQSGECDKEAIELFCKMISG 348

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV----VDMLGRAG 409
             +P+  +   VL ACG       G ++Y     +Y +K       CV    + M  R+G
Sbjct: 349 HIRPNHFSFSSVLKACGNLSDPYTGEQVY-----SYAVKLGIASVNCVGNSLISMYARSG 403

Query: 410 QLDRA 414
           +++ A
Sbjct: 404 RMEDA 408



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 160/343 (46%), Gaps = 48/343 (13%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M   N  PD  T + + K     ++  +G L+H   ++ G  +D ++ N+L+S+Y KCG 
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 94

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM-KRRNVYAWTAMING 230
                                                +R +F+ M  +R++ +W+AM++ 
Sbjct: 95  ----------------------------------TETARLIFEGMGNKRDLVSWSAMVSC 120

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-ELN 289
           +  N    +A+  FL+M L+    PN+    +V+  CS+      G+ I+GF ++   L 
Sbjct: 121 FANNSMEWQAIWTFLDM-LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLE 179

Query: 290 HDVSLCNALIDMYSK-CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
            DV +   LIDM+ K  G L  A +VF D    ++ +TW+ +++ +   G   +A+ L+ 
Sbjct: 180 ADVCVGCELIDMFVKGSGDLGSAYKVF-DKMPERNLVTWTLMITRFAQLGCARDAIDLFL 238

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC-AC-VVDMLG 406
            M   G  PD  T   VLSAC   GL+  G ++++ VI   R+    ++C  C +VDM  
Sbjct: 239 DMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI---RLGLALDVCVGCSLVDMYA 295

Query: 407 RA---GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
           +    G +D +    + MP E +   W A+++A V  G  + +
Sbjct: 296 KCAADGSVDDSRKVFEQMP-EHNVMSWTAIITAYVQSGECDKE 337



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 2/192 (1%)

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
           L++  +    P+  +   +L +C        GK +H   ++  L  D  + N LI +YSK
Sbjct: 32  LDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSK 91

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           CG  + AR +FE     +D ++WS++VS +  +    +A+  +  M+ LG  P+      
Sbjct: 92  CGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAA 151

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR-AGQLDRALDFIKTMPV 423
           V+ AC  +     G  IY  V+ T  ++    +   ++DM  + +G L  A      MP 
Sbjct: 152 VIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMP- 210

Query: 424 EPSPSIWGALVS 435
           E +   W  +++
Sbjct: 211 ERNLVTWTLMIT 222



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           ++ T    L  +A+  ++   +Q H ++L  G+ SN  +   LI+ Y+ CG    +  VF
Sbjct: 454 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 513

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDL 137
           N ++ ++V  + S+I G+ K+     ALE+F  M  +   P++ T +A +S  S      
Sbjct: 514 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS------ 567

Query: 138 NVGMLIHG 145
           +VGM+  G
Sbjct: 568 HVGMISEG 575


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 170/518 (32%), Positives = 277/518 (53%), Gaps = 49/518 (9%)

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVS 118
           K I ++        ++ VF  +  +    +N++++GY K  G   EA ELF  +      
Sbjct: 78  KTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI----PE 133

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF-----VVDVILANSLMSMYVKCGKFS 173
           PD  +   +         L   +  +G+   + F     V D+   N+L+S + + G+  
Sbjct: 134 PDSVSYNIM---------LVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQ 184

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGD----------------------------FSL 205
           +  +LF  MP++N  SW+  ISG+   GD                            F  
Sbjct: 185 KAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGK 244

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  + R+F +M  +N+  W +MI GYV+N   ++ L +F  M ++ R+ PN +SL SVL 
Sbjct: 245 VELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLL 303

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            CS+L  L  G+Q+H    +  L+ D + C +LI MY KCG LD A ++F +    KD I
Sbjct: 304 GCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVI 362

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
           +W++++SGY  HG G +A+ L++KM     KPD IT V V+ AC  +G ++ G++ + S+
Sbjct: 363 SWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSM 422

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
              + I+       CV+D+LGRAG+LD A+  IK MP +P  +I+G L+ A  +H N ++
Sbjct: 423 KKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDL 482

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            + A ++L+ L+P + + YV L+N+YA++ +WD VA++R MMK+  + K PG SWI I  
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKS 542

Query: 506 KTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            TH F  +D+ HP   SI++ L++L   M+ A   P L
Sbjct: 543 VTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDL 580


>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 532

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 174/526 (33%), Positives = 286/526 (54%), Gaps = 17/526 (3%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP- 71
           +++  Y  A+ Q  L +    R++   KQ HS ++      +PF + K+I+ +A+     
Sbjct: 1   MSASKYVKAS-QRCLSLLEQCRTMSQIKQMHSHLIVSASRLDPFAAGKIISLFAVSSNAD 59

Query: 72  -TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
            + +  +F S+ H+  +++N++I  +V+ + +  AL L+ NM  +   P+++T + +  L
Sbjct: 60  ISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFV--L 117

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
                +  VG+  H   IK+G+     + N L+ +Y           LFD    R+V +W
Sbjct: 118 RACTDNSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITW 177

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
              I+G+  SG       +R +FDQM  RN  +W+AMI GYV  G   EAL LF ++QL 
Sbjct: 178 TALINGYVKSGHVEF---ARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLT 234

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             + PN   +V  L  CS L  L  G+ IH +  R     D  L  AL+DMY+KCG ++ 
Sbjct: 235 G-LRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEI 293

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           A  VFE    +KDA  ++S++SG   HG+  +A+ L+ +M      P+ +T + VLSAC 
Sbjct: 294 ACSVFEKMP-DKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACS 352

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
           R GL++EGL I+N +   Y I+P  +   C+VD+LGRAG L+ A   ++ MP+EP   + 
Sbjct: 353 RMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVL 412

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
           GAL+++  +HG+ E+     +SL++   ++   +V LSN+YASS +WD V ++R  M  +
Sbjct: 413 GALLNSCRVHGDVELGKETVESLVERGLDHGGVHVLLSNMYASSNQWDWVVKVRKEMGAK 472

Query: 491 GLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRG 536
            +KK PGCS I I G    F   D +       Y  ++D++L++ G
Sbjct: 473 KVKKVPGCSSIEIDGSVSEFIAGDMS-------YLRVEDVMLVLLG 511


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 166/488 (34%), Positives = 273/488 (55%), Gaps = 5/488 (1%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           N   S  +I      GQ  ++  +FN +  KD+  +++LI+GY +N  + EAL +F  M 
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 296

Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
            + +  D+  + ++      +  +  G +IHGL I++G    V L N+L+ MY   G+  
Sbjct: 297 ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIM 356

Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
           +   LF+     +  SWN  ISG    G    V ++R +FD M  +++ +W+A+I+GY Q
Sbjct: 357 DAQKLFNGSHNLDQISWNSMISGCMKCGS---VEKARALFDVMPEKDIVSWSAVISGYAQ 413

Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
           +    E L LF EMQL  +I P++  LVSV+  C+ L  L  GK +H +  +  L  +V 
Sbjct: 414 HDCFSETLALFHEMQL-GQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVI 472

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L   L+DMY KCG ++ A  VF      K   +W++++ G  ++G    ++ ++++M   
Sbjct: 473 LGTTLLDMYMKCGCVENALEVFNGME-EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNN 531

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G  P+ IT +GVL AC   GL++EG   + S+I  + I+P  +   C+VD+LGRAG L+ 
Sbjct: 532 GVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNE 591

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A   I++MP+ P  + WGAL+ A   HG++EM +   + LI+L+P++   +V LSN++AS
Sbjct: 592 AEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFAS 651

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
              W+ V E+R MMK +G+ K+PGCS I  +G  H F   DK HP    +  ML+++   
Sbjct: 652 KGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKR 711

Query: 534 MRGAAASP 541
           ++    +P
Sbjct: 712 LKMEGYAP 719



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 238/485 (49%), Gaps = 79/485 (16%)

Query: 27  LQVSATH----RSLKLTKQSHSQILSLGHISNPFVSTKLI---TAYALCGQPTQSQLVFN 79
           L +  TH     +LK   +  SQ++  G IS+ F +++L+   T     G     Q +F+
Sbjct: 41  LSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQ-IFD 99

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
            I++ + +++N+++  Y++++   +AL L+  M  +NV PD++T   + +    ++ L  
Sbjct: 100 RIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRLLEF 158

Query: 140 G-MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           G   IH   +K+GF  DV + N+L++MY  CG   +   LFDE P  +  SWN  ++G+ 
Sbjct: 159 GGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYV 218

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYA-------------------------------WTAM 227
             GD   V  ++ +FDQM +RN+ A                               W+A+
Sbjct: 219 KKGD---VEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSAL 275

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
           I+GY QNG  +EALV+F+EM   + +  ++V +VSVL  C+ L  +  GK IHG  IR  
Sbjct: 276 ISGYEQNGMYEEALVMFIEMN-ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMG 334

Query: 288 LNHDVSLCNALIDMYS-------------------------------KCGSLDCARRVFE 316
           +   V+L NALI MYS                               KCGS++ AR +F 
Sbjct: 335 IESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALF- 393

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D    KD ++WS+++SGY  H    E + L+++M     +PD   +V V+SAC     ++
Sbjct: 394 DVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALD 453

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           +G  ++ + I    +K    +   ++DM  + G ++ AL+    M  E   S W AL+  
Sbjct: 454 QGKWVH-AYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME-EKGVSSWNALIIG 511

Query: 437 SVMHG 441
             ++G
Sbjct: 512 LAVNG 516



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 100/237 (42%), Gaps = 5/237 (2%)

Query: 30  SATH-RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYL 88
           + TH  +L   K  H+ I   G   N  + T L+  Y  CG    +  VFN ++ K V  
Sbjct: 445 ACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSS 504

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +N+LI G   N     +L++FS M  + V P++ T   +      +  ++ G   H  S+
Sbjct: 505 WNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGR-CHFASM 563

Query: 149 --KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSL 205
             K G   +V     ++ +  + G  +E   L + MP   +V +W   +      GD  +
Sbjct: 564 IEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEM 623

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
             R  R   +++  +      + N +   GD ++ L +   M+ +  ++    SL+ 
Sbjct: 624 GERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIE 680



 Score = 42.7 bits (99), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           LD + ++F D   N +   W++++  Y       +A+LLY  MV     PD  T   V+ 
Sbjct: 91  LDYSLQIF-DRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQ 149

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           AC    L   G EI++ V+          +   +++M    G +  A       PV  S 
Sbjct: 150 ACAVRLLEFGGKEIHDHVLKV-GFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSV 208

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           S W ++++  V  G+ E   L +  + Q
Sbjct: 209 S-WNSILAGYVKKGDVEEAKLIFDQMPQ 235


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 173/531 (32%), Positives = 278/531 (52%), Gaps = 37/531 (6%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
           AL +S    S T    L   A    L   +    +  + G+  + FV + L+  Y+ CG 
Sbjct: 102 ALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGA 161

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
              +  VF+ +  KD   +++++ G+V      EAL ++S M    V+ D+  +  + + 
Sbjct: 162 MGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQA 221

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
                +  +G  +HG  ++ G  +DV++A SL+ MY K G F                  
Sbjct: 222 CTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDV---------------- 265

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
                             +R+VF  M  RN  +W A+I+G+ QNG  DEAL LF EM   
Sbjct: 266 ------------------ARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTS 307

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
             ++P+  +LVS L  C+ +  L  GK IHGF +R+ L     L  A++DMYSKCGSL+ 
Sbjct: 308 G-LQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKCGSLES 365

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           AR++F   S ++D + W+++++  G HG GH+A+ L+ ++   G KPD  T   +LSA  
Sbjct: 366 ARKLFNKLS-SRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALS 424

Query: 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
            SGL+ EG   ++ +I  + I+PT + C CVVD+L R+G ++ A + + +M  EP+  IW
Sbjct: 425 HSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIW 484

Query: 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
            AL+S  + +   E+ +   K +++ +PE+      +SNLYA++++WD V E+R +MKD 
Sbjct: 485 VALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDS 544

Query: 491 GLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
           G KK PG S I +HG  H F + D++HP    I +M+  L   MR     P
Sbjct: 545 GSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVP 595


>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 676

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 269/469 (57%), Gaps = 9/469 (1%)

Query: 29  VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYL 88
           V A  RS+   KQ H+ ++  G  S  ++   LI  Y   G    ++ +F      D   
Sbjct: 139 VDAERRSVG--KQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMFRCAPTADAVS 196

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
            N +++GYVK     +AL  F  M    +  D +T   +    G +K   +G  +HG+ +
Sbjct: 197 CNIMLSGYVKGGCSGKALRFFRGMASRGIGVDQYTAVALLACCGRLKKAVLGRSVHGVVV 256

Query: 149 KIGFVVD--VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           +   V D  +IL+N+L+ MY KCG+ +  + +FDE  +R+  SWN  ++G A++G   L 
Sbjct: 257 RRIGVADRGLILSNALLDMYAKCGEMNTAMRVFDEAGERDGISWNTMVAGFANAGLLDL- 315

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             + + F +   R++ +W A++ GY +  +    ++LF +M L   + P+KV+ V+++  
Sbjct: 316 --ASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDM-LASSVIPDKVTAVTLISA 372

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
            +    L+  + +HG+ +++    D  L +AL+DMY KCGS+  A  VFE  + +KD   
Sbjct: 373 VAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGSIKLAYAVFE-KAVDKDVTL 431

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++SG   HG G  A+ L+ KM   G++P+ +T+V VLSAC  +GL +EG +I++++ 
Sbjct: 432 WTAMISGLAFHGHGDVALDLFWKMQAEGTEPNGVTLVAVLSACSHAGLFDEGCKIFDTLK 491

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
             + I+P  E   C+VD+L R+G+L  A+D  + MP++PS SIWG+++SAS    N+E+ 
Sbjct: 492 QRFNIEPGVEHFGCMVDLLARSGRLSDAVDLARRMPMKPSRSIWGSILSASSACQNTEVA 551

Query: 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
           ++A K L+ LEP     YV LSN+YA+  +W+   E+R  M+ +G++KS
Sbjct: 552 EIASKELLCLEPAEEGGYVLLSNMYAAEGQWNYSNEVRENMERKGVRKS 600


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 179/517 (34%), Positives = 276/517 (53%), Gaps = 40/517 (7%)

Query: 29  VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-KDVY 87
           ++A    + L  Q HS  +S G  S   V+  L+T Y   G    ++ VF  +   +D  
Sbjct: 147 ITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEV 206

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            +NS+I  Y ++   ++AL LF  M    ++ D FTLA++      ++DL+ G+  HG  
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266

Query: 148 IKIGFVVDVILANSLMSMYVKCGK-FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           IK GF  +  + + L+ +Y KCG   S+C                               
Sbjct: 267 IKTGFHQNSHVGSGLIDLYSKCGGGMSDC------------------------------- 295

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGD-LDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
              R+VF+++   ++  W  M++GY QN + L++AL  F +MQ      PN  S V V+ 
Sbjct: 296 ---RKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQ-GIGYRPNDCSFVCVIS 351

Query: 266 TCSSLIGLSGGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            CS+L   S GKQIH  A++ ++ ++ +S+ NALI MYSKCG+L  ARR+F D     + 
Sbjct: 352 ACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLF-DRMAEHNT 410

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           ++ +S+++GY  HG   E++ L+  M+     P  IT + VLSAC  +G + EG   +N 
Sbjct: 411 VSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNM 470

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +   + I+P  E  +C++D+LGRAG+L  A + I  MP  P    W +L+ A   HGN E
Sbjct: 471 MKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIE 530

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           +   A   ++QLEP N + YV LSN+YAS+ RW+ VA +R  M+DRG+KK PGCSWI + 
Sbjct: 531 LAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVK 590

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            + H F   D +HP    IYE L+++   M+ A   P
Sbjct: 591 KRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVP 627



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 159/323 (49%), Gaps = 9/323 (2%)

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
           +DL+ G  +H L IK         +N  + +Y KCG+ +     F ++   NV S+N  I
Sbjct: 22  RDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAII 81

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           + +A     S  + + ++FDQ+   ++ ++  +I+ Y   G+   AL LF  M+ +  ++
Sbjct: 82  AAYAKE---SRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR-EMGLD 137

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
            +  +L +V+  C   +GL G  Q+H  A+    +  VS+ NAL+  Y K G LD A+RV
Sbjct: 138 MDGFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRV 195

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F      +D ++W+S++  YG H +G +A+ L+ +MV  G   D+ T+  VL+A      
Sbjct: 196 FYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLED 255

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++ GL+ +  +I T      + + + ++D+  + G        +     EP   +W  +V
Sbjct: 256 LSGGLQFHGQLIKT-GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMV 314

Query: 435 SASVMHGNSEMQDLAYKSLIQLE 457
           S      N E  + A +   Q++
Sbjct: 315 SGYSQ--NEEFLEDALECFRQMQ 335



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 223/497 (44%), Gaps = 50/497 (10%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           ++T    +H L+     R L   K  HS  +      + + S   I  Y+ CG+   ++ 
Sbjct: 5   SWTLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARK 64

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF----TLATISKLSG 132
            F  I   +V+ +N++I  Y K     E+  L ++  +  +   D     TL +     G
Sbjct: 65  AFQDISDPNVFSFNAIIAAYAK-----ESRPLIAHQLFDQIPEPDLVSYNTLISAYADCG 119

Query: 133 EIK---DLNVGMLIHGLSIKIGFVV---------DVILANSLMSMYVKCGKFSECLNLFD 180
           E      L  GM   GL +  GF +         DV L   L S+ V  G        FD
Sbjct: 120 ETAPALGLFSGMREMGLDMD-GFTLSAVITACCDDVGLIGQLHSVAVSSG--------FD 170

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-RNVYAWTAMINGYVQNGDLDE 239
                N    N  ++ +  +GD      ++RVF  M   R+  +W +MI  Y Q+ +  +
Sbjct: 171 SYVSVN----NALLTYYGKNGDLD---DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSK 223

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           AL LF EM ++  +  +  +L SVL   + L  LSGG Q HG  I+   + +  + + LI
Sbjct: 224 ALGLFQEM-VRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLI 282

Query: 300 DMYSKCGS--LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE-AVLLYNKMVCLGSK 356
           D+YSKCG    DC R+VFE+ +   D + W+++VSGY  + +  E A+  + +M  +G +
Sbjct: 283 DLYSKCGGGMSDC-RKVFEEIT-EPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYR 340

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           P+  + V V+SAC      ++G +I++  + +        +   ++ M  + G L  A  
Sbjct: 341 PNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARR 400

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI---QLEPENPSNYVSLSNLYAS 473
               M    + S+  ++++    HG  EM+ L     +   Q+ P + + ++S+ +  A 
Sbjct: 401 LFDRMAEHNTVSL-NSMIAGYAQHG-IEMESLHLFQWMLERQIAPTSIT-FISVLSACAH 457

Query: 474 SRRWDAVAELRTMMKDR 490
           + R +       MMK++
Sbjct: 458 TGRVEEGWNYFNMMKEK 474


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 161/499 (32%), Positives = 278/499 (55%), Gaps = 40/499 (8%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALC---GQPTQSQLVFNSIQHKDVYLYNSL 92
           L L KQ HS+++ LG   +  V   L+  YA C   G    S+ VF  +   +V  + ++
Sbjct: 247 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 306

Query: 93  INGYVKN-HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I  YV++     EA+ELF  M   ++ P+ F+ +++ K  G + D   G  ++  ++K+G
Sbjct: 307 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 366

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
                 + NSL+SMY + G+  +                                  +R+
Sbjct: 367 IASVNCVGNSLISMYARSGRMED----------------------------------ARK 392

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
            FD +  +N+ ++ A+++GY +N   +EA +LF E+     I  +  +  S+L   +S+ 
Sbjct: 393 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA-DTGIGISAFTFASLLSGAASIG 451

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            +  G+QIHG  ++     +  +CNALI MYS+CG+++ A +VF +   +++ I+W+S++
Sbjct: 452 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMI 510

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           +G+  HG    A+ +++KM+  G+KP+ IT V VLSAC   G+I+EG + +NS+   + I
Sbjct: 511 TGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 570

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
            P  E  AC+VD+LGR+G L  A++FI +MP+     +W  L+ A  +HGN+E+   A +
Sbjct: 571 VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAE 630

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            +++ EP++P+ Y+ LSNL+AS+ +W  V ++R  MK+R L K  GCSWI +  + H F 
Sbjct: 631 MILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFH 690

Query: 512 VADKAHPCSVSIYEMLDDL 530
           V + +HP +  IY+ LD L
Sbjct: 691 VGETSHPQAWQIYQELDQL 709



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 189/393 (48%), Gaps = 37/393 (9%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF+ +  +++  +  +I  + +     +A++LF +M  S   PD FT +++     E+  
Sbjct: 187 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 246

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
           L +G  +H   I++G  +DV +  SL+ MY KC                           
Sbjct: 247 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC--------------------------- 279

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD-EALVLFLEMQLKDRIEP 255
            A+ G    V  SR+VF+QM   NV +WTA+I  YVQ+G+ D EA+ LF +M +   I P
Sbjct: 280 -AADGS---VDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKM-ISGHIRP 334

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           N  S  SVL  C +L     G+Q++ +A++  +     + N+LI MY++ G ++ AR+ F
Sbjct: 335 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 394

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
            D  F K+ +++++IV GY  + K  EA LL+N++   G      T   +LS     G +
Sbjct: 395 -DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAM 453

Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
            +G +I+  ++     K    IC  ++ M  R G ++ A      M      S W ++++
Sbjct: 454 GKGEQIHGRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVIS-WTSMIT 511

Query: 436 ASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSL 467
               HG  +   ++ +K L      N   YV++
Sbjct: 512 GFAKHGFATRALEMFHKMLETGTKPNEITYVAV 544



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 202/425 (47%), Gaps = 54/425 (12%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           L  A +T  L+T +N      T    L+     R+ +L K  H +++  G   +  V   
Sbjct: 7   LHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNT 66

Query: 61  LITAYALCGQPTQSQLVFNSIQHK-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           LI+ Y+ CG    ++L+F  + +K D+  ++++++ +  N    +A+  F +M      P
Sbjct: 67  LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 126

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSLMSMYVK-CGKFSECLN 177
           +++  A + +         VG +I+G  +K G++  DV +   L+ M+VK  G       
Sbjct: 127 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 186

Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
           +FD+MP+RN+ +W                                  T MI  + Q G  
Sbjct: 187 VFDKMPERNLVTW----------------------------------TLMITRFAQLGCA 212

Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
            +A+ LFL+M+L   + P++ +  SVL  C+ L  L+ GKQ+H   IR  L  DV +  +
Sbjct: 213 RDAIDLFLDMELSGYV-PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 271

Query: 298 LIDMYSKC---GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK-GHEAVLLYNKMVCL 353
           L+DMY+KC   GS+D +R+VFE      + ++W++I++ Y   G+   EA+ L+ KM+  
Sbjct: 272 LVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITAYVQSGECDKEAIELFCKMISG 330

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV----VDMLGRAG 409
             +P+  +   VL ACG       G ++Y     +Y +K       CV    + M  R+G
Sbjct: 331 HIRPNHFSFSSVLKACGNLSDPYTGEQVY-----SYAVKLGIASVNCVGNSLISMYARSG 385

Query: 410 QLDRA 414
           +++ A
Sbjct: 386 RMEDA 390



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 160/343 (46%), Gaps = 48/343 (13%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M   N  PD  T + + K     ++  +G L+H   ++ G  +D ++ N+L+S+Y KCG 
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 76

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM-KRRNVYAWTAMING 230
                                                +R +F+ M  +R++ +W+AM++ 
Sbjct: 77  ----------------------------------TETARLIFEGMGNKRDLVSWSAMVSC 102

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-ELN 289
           +  N    +A+  FL+M L+    PN+    +V+  CS+      G+ I+GF ++   L 
Sbjct: 103 FANNSMEWQAIWTFLDM-LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLE 161

Query: 290 HDVSLCNALIDMYSK-CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
            DV +   LIDM+ K  G L  A +VF D    ++ +TW+ +++ +   G   +A+ L+ 
Sbjct: 162 ADVCVGCELIDMFVKGSGDLGSAYKVF-DKMPERNLVTWTLMITRFAQLGCARDAIDLFL 220

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC-AC-VVDMLG 406
            M   G  PD  T   VLSAC   GL+  G ++++ VI   R+    ++C  C +VDM  
Sbjct: 221 DMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI---RLGLALDVCVGCSLVDMYA 277

Query: 407 RA---GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQ 446
           +    G +D +    + MP E +   W A+++A V  G  + +
Sbjct: 278 KCAADGSVDDSRKVFEQMP-EHNVMSWTAIITAYVQSGECDKE 319



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 2/192 (1%)

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
           L++  +    P+  +   +L +C        GK +H   ++  L  D  + N LI +YSK
Sbjct: 14  LDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSK 73

Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
           CG  + AR +FE     +D ++WS++VS +  +    +A+  +  M+ LG  P+      
Sbjct: 74  CGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAA 133

Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR-AGQLDRALDFIKTMPV 423
           V+ AC  +     G  IY  V+ T  ++    +   ++DM  + +G L  A      MP 
Sbjct: 134 VIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMP- 192

Query: 424 EPSPSIWGALVS 435
           E +   W  +++
Sbjct: 193 ERNLVTWTLMIT 204



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           ++ T    L  +A+  ++   +Q H ++L  G+ SN  +   LI+ Y+ CG    +  VF
Sbjct: 436 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 495

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDL 137
           N ++ ++V  + S+I G+ K+     ALE+F  M  +   P++ T +A +S  S      
Sbjct: 496 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS------ 549

Query: 138 NVGMLIHG 145
           +VGM+  G
Sbjct: 550 HVGMISEG 557


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 179/517 (34%), Positives = 276/517 (53%), Gaps = 40/517 (7%)

Query: 29  VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-KDVY 87
           ++A    + L  Q HS  +S G  S   V+  L+T Y   G    ++ VF  +   +D  
Sbjct: 147 ITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEV 206

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
            +NS+I  Y ++   ++AL LF  M    ++ D FTLA++      ++DL+ G+  HG  
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266

Query: 148 IKIGFVVDVILANSLMSMYVKCGK-FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           IK GF  +  + + L+ +Y KCG   S+C                               
Sbjct: 267 IKTGFHQNSHVGSGLIDLYSKCGGGMSDC------------------------------- 295

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGD-LDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
              R+VF+++   ++  W  M++GY QN + L++AL  F +MQ      PN  S V V+ 
Sbjct: 296 ---RKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQ-GIGYRPNDCSFVCVIS 351

Query: 266 TCSSLIGLSGGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            CS+L   S GKQIH  A++ ++ ++ +S+ NALI MYSKCG+L  ARR+F D     + 
Sbjct: 352 ACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLF-DRMAEHNT 410

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           ++ +S+++GY  HG   E++ L+  M+     P  IT + VLSAC  +G + EG   +N 
Sbjct: 411 VSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNM 470

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +   + I+P  E  +C++D+LGRAG+L  A + I  MP  P    W +L+ A   HGN E
Sbjct: 471 MKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIE 530

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           +   A   ++QLEP N + YV LSN+YAS+ RW+ VA +R  M+DRG+KK PGCSWI + 
Sbjct: 531 LAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVK 590

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            + H F   D +HP    IYE L+++   M+ A   P
Sbjct: 591 KRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVP 627



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 159/323 (49%), Gaps = 9/323 (2%)

Query: 135 KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194
           +DL+ G  +H L IK         +N  + +Y KCG+ +     F ++   NV S+N  I
Sbjct: 22  RDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAII 81

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           + +A     S  + + ++FDQ+   ++ ++  +I+ Y   G+   AL LF  M+ +  ++
Sbjct: 82  AAYAKE---SRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR-EMGLD 137

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
            +  +L +V+  C   +GL G  Q+H  A+    +  VS+ NAL+  Y K G LD A+RV
Sbjct: 138 MDXFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRV 195

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F      +D ++W+S++  YG H +G +A+ L+ +MV  G   D+ T+  VL+A      
Sbjct: 196 FYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLED 255

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           ++ GL+ +  +I T      + + + ++D+  + G        +     EP   +W  +V
Sbjct: 256 LSGGLQFHGQLIKT-GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMV 314

Query: 435 SASVMHGNSEMQDLAYKSLIQLE 457
           S      N E  + A +   Q++
Sbjct: 315 SGYSQ--NEEFLEDALECFRQMQ 335



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 220/512 (42%), Gaps = 80/512 (15%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
           ++T    +H L+     R L   K  HS  +      + + S   I  Y+ CG+   ++ 
Sbjct: 5   SWTLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARK 64

Query: 77  VFNSIQHKDVYLYNSLINGYVKNH----GHN---------------------------EA 105
            F  I   +V+ +N++I  Y K       H                             A
Sbjct: 65  AFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPA 124

Query: 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
           L LFS M    +  D FTL+ +  ++    D+ +   +H +++  GF   V + N+L++ 
Sbjct: 125 LGLFSGMREMGLDMDXFTLSAV--ITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTY 182

Query: 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-RNVYAW 224
           Y K G   +                                  ++RVF  M   R+  +W
Sbjct: 183 YGKNGDLDD----------------------------------AKRVFYGMGGIRDEVSW 208

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            +MI  Y Q+ +  +AL LF EM ++  +  +  +L SVL   + L  LSGG Q HG  I
Sbjct: 209 NSMIVAYGQHQEGSKALGLFQEM-VRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLI 267

Query: 285 RKELNHDVSLCNALIDMYSKCGS--LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
           +   + +  + + LID+YSKCG    DC R+VFE+ +   D + W+++VSGY  + +  E
Sbjct: 268 KTGFHQNSHVGSGLIDLYSKCGGGMSDC-RKVFEEIT-EPDLVLWNTMVSGYSQNEEFLE 325

Query: 343 -AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
            A+  + +M  +G +P+  + V V+SAC      ++G +I++  + +        +   +
Sbjct: 326 DALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNAL 385

Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI---QLEP 458
           + M  + G L  A      M    + S+  ++++    HG  EM+ L     +   Q+ P
Sbjct: 386 IAMYSKCGNLQDARRLFDRMAEHNTVSL-NSMIAGYAQHG-IEMESLHLFQWMLERQIAP 443

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
            + + ++S+ +  A + R +       MMK++
Sbjct: 444 TSIT-FISVLSACAHTGRVEEGWNYFNMMKEK 474


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 184/567 (32%), Positives = 293/567 (51%), Gaps = 73/567 (12%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQ---LVFNSIQHKDVYLYNS 91
           S K   Q H+Q++  G +  P  + + +    LC  P   Q    +F  ++  D ++ N+
Sbjct: 71  STKEFNQIHTQLIVSGLLQQPLAAGRAVKT--LCSFPDSVQHAVSLFEGLEEPDAFICNT 128

Query: 92  LINGYVKNHGHNEALELF-SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           ++  YV  +    AL  +   M    V+P+ +T   + K+  EI  +  G  IH   +K 
Sbjct: 129 IMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKF 188

Query: 151 GFVVDVILANSLMSMYVKCGK-------FSEC------------------------LNLF 179
           GF +D+ + NSL+ MY  CG+       F  C                          LF
Sbjct: 189 GFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELF 248

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           +EMP+R++ SWN  I+G+  +GD +    +  +F++M  R++ +W  MI+GY Q  +++ 
Sbjct: 249 EEMPERDLFSWNSMIAGYVGNGDMT---AAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEI 305

Query: 240 ALVLF----------------LEMQLKDRIE-------------PNKVSLVSVLPTCSSL 270
           A  LF                L +++KD  E             PN+ +LVSVL  C+ L
Sbjct: 306 ACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHL 365

Query: 271 IGLSGGKQIHGFAIR-KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
             L  GK IH +    + +  DV L  AL+ MY+KCG++D AR VF+  S N+  ++W+S
Sbjct: 366 GRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMS-NRSVVSWNS 424

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++ GYG+HG+  +A+ ++  M   G  P+  T + VLSAC  SG+I EG   ++ +   Y
Sbjct: 425 MIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAY 484

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
           +I+P  E   C+VD+LGRAG +    + I+ MP+E   ++WGAL+SA   H NSE+ ++ 
Sbjct: 485 KIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIV 544

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG-KTH 508
            K LI+LEP +   Y+ LSN+YA+  +WD V  +R MMK+RGL K+ G SW+ I    T 
Sbjct: 545 AKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFSWVHIEEFGTQ 604

Query: 509 CFSVADKAHPCSVSIYEMLDDLILIMR 535
            F      H  S+ +Y +L D+   M+
Sbjct: 605 SFVEKASVHRKSM-MYSILSDMATQMK 630


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 170/509 (33%), Positives = 286/509 (56%), Gaps = 19/509 (3%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           ++K  KQ H+QI+  G     F+  KL++ Y   G    +  VF  I++    ++N +I 
Sbjct: 46  TIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIR 105

Query: 95  GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
           G+ ++   ++ +EL++ M  +   P++FT + +         L  G  +HG  +  G+  
Sbjct: 106 GHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCT 165

Query: 155 DVILANSLMSMYVKCGKFS---ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
           +V +  SL+++Y   G +    +   +FDE+  RN+ SWN  ++G+   GD   V  +RR
Sbjct: 166 NVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGD---VDGARR 222

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +FD+M  RNV +WT MI G  Q G   +AL LF EM+ +  ++ ++V+LV+ L  C+ L 
Sbjct: 223 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMR-RAGVKLDQVALVAALSACAELG 281

Query: 272 GLSGGKQIHGFAIRKELNHD-----VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
            L  G  IH + I + L+       VSL N+LI MY+ CG +D A +VF      +  I+
Sbjct: 282 DLKLGTWIHSY-IDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQ-QRSTIS 339

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGS---KPDIITIVGVLSACGRSGLINEGLEIYN 383
           W+S+++G+   G   EA+ ++  M  LG+   +PD IT +GVL AC  +G +++G   + 
Sbjct: 340 WTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFE 399

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            +   + I P  E   C+VD+L RAG LD A    ++MP++P+ ++WGAL+    +H N+
Sbjct: 400 CMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNA 459

Query: 444 EMQD-LAYKSLIQLEPENPSNY-VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           E+   +A K +++L+P+  + Y V LSN+YA+++RW  VA +R  M + G++K  G SW+
Sbjct: 460 ELASHVAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWV 519

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
            I+G  H F   D  H  + S+YEML  +
Sbjct: 520 QINGVVHDFVAGDWTHKHASSVYEMLSKI 548


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 196/589 (33%), Positives = 304/589 (51%), Gaps = 77/589 (13%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L V AT   ++   Q H  ++  G  S+P V+  +IT Y+ CG    ++ +F+ +   D 
Sbjct: 285 LSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDT 344

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATI--SKL-SGEIK---DLNVG 140
             +N LI GYV+N   +EA+ LF  M  S V  D  T A+   S L SG +K   +++  
Sbjct: 345 VTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSY 404

Query: 141 MLIHGLSIKIGF-------------------------VVDVILANSLMSMYVKCGKFSEC 175
           ++ HG+   +                           +VDV +  +++S YV  G   E 
Sbjct: 405 IVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEA 464

Query: 176 LNLFDEMPQRNV---------------------------------GSWNVRISG------ 196
           LNLF  + Q  +                                 G  NV   G      
Sbjct: 465 LNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYM 524

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +A SG   L   + + F +M  ++   W  MI  + QNG  + A+ LF +M      + +
Sbjct: 525 YAKSGRLDL---AYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSG-TKFD 580

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            VSL + L  C++   L  GK++H F +R     D  + + LIDMYSKCG L  AR VF+
Sbjct: 581 SVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFD 640

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
              + K+ ++W+SI++ YG HG+  E + L+++MV  G +PD +T + ++SACG +GL++
Sbjct: 641 MMDW-KNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVD 699

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
           EG+  +  +   Y I    E  AC+VD+ GRAG+L  A D IK+MP  P    WG+L+ A
Sbjct: 700 EGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGA 759

Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
             +HGN E+  LA K L++L+P N   YV LSN++A +  W++V ++R++MK++G++K P
Sbjct: 760 CRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIP 819

Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR--GAAASPHL 543
           G SWI ++G TH FS AD  HP SV IY +L +L+L +R  G    P+L
Sbjct: 820 GYSWIDVNGGTHMFSAADGCHPQSVEIYLILKNLLLELRKHGYVPQPYL 868



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 205/424 (48%), Gaps = 38/424 (8%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T  + ++      ++ L K  H    S+G   + F+ + LI  Y   G    ++ +F+ +
Sbjct: 179 TFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDEL 238

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             +D  L+N ++NGYVKN   N AL  F  M  S V P+  +   +  +      +  G+
Sbjct: 239 PVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGI 298

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HGL I+ GF  D  +AN++++MY KCG   +   +FD MPQ +  +WN          
Sbjct: 299 QLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWN---------- 348

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                    +I GYVQNG  DEA+ LF  M +   ++ + ++  
Sbjct: 349 ------------------------GLIAGYVQNGFTDEAVALFKAM-VTSGVKLDSITFA 383

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S LP+      L   K++H + +R  +  DV L +AL+D+Y K G ++ A + F+ ++  
Sbjct: 384 SFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLV 443

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
             A+  ++++SGY L+G   EA+ L+  ++  G  P+ +T+  VL AC     +  G E+
Sbjct: 444 DVAVC-TAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKEL 502

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  ++    ++   ++ + +  M  ++G+LD A  F + MPV+ S   W  ++ +   +G
Sbjct: 503 HCDILKK-GLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDS-VCWNLMIVSFSQNG 560

Query: 442 NSEM 445
             E+
Sbjct: 561 KPEL 564



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 206/419 (49%), Gaps = 42/419 (10%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
            +Q H+++L  G   +  + ++++  Y LC        +F  +Q      +N LI G+  
Sbjct: 95  VRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSM 154

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
               + AL  F  M  SNV+PD +T   + K  G + ++ +  ++H L+  +GF +D+ +
Sbjct: 155 LGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFI 214

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            +SL+ +Y   G   +   LFDE+P R+   WNV ++G+                     
Sbjct: 215 GSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGY--------------------- 253

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
                        V+NGD + AL  F EM+    ++PN VS V +L  C++   +  G Q
Sbjct: 254 -------------VKNGDFNSALGTFQEMR-NSCVKPNSVSFVCLLSVCATRGIVRAGIQ 299

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HG  IR     D ++ N +I MYSKCG+L  AR++F D     D +TW+ +++GY  +G
Sbjct: 300 LHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIF-DIMPQTDTVTWNGLIAGYVQNG 358

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              EAV L+  MV  G K D IT    L +  +SG +    E+++ ++  + +     + 
Sbjct: 359 FTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVR-HGVPFDVYLK 417

Query: 399 ACVVDMLGRAGQLDRALD-FIKTMPVEPSPSIWGALVSASVMHG-NSEMQDLAYKSLIQ 455
           + +VD+  + G ++ A   F +   V+   ++  A++S  V++G N E  +L ++ LIQ
Sbjct: 418 SALVDIYFKGGDVEMACKTFQQNTLVD--VAVCTAMISGYVLNGLNVEALNL-FRWLIQ 473



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 129/323 (39%), Gaps = 46/323 (14%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L   A   SLKL K+ H  IL  G  +   V + +   YA  G+   +   F  +
Sbjct: 482 TMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRM 541

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KD   +N +I  + +N     A++LF  M  S    D  +L+           L  G 
Sbjct: 542 PVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGK 601

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   ++  F+ D  +A++L+ MY KCGK +   ++FD M  +N  SWN          
Sbjct: 602 ELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWN---------- 651

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   ++I  Y  +G   E L LF EM ++  I+P+ V+ +
Sbjct: 652 ------------------------SIIAAYGNHGRPRECLDLFHEM-VEAGIQPDHVTFL 686

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC------NALIDMYSKCGSLDCARRVF 315
            ++  C        G    G    + +  +  +C        ++D+Y + G L  A    
Sbjct: 687 VIMSACG-----HAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTI 741

Query: 316 EDSSFNKDAITWSSIVSGYGLHG 338
           +   F  DA TW S++    LHG
Sbjct: 742 KSMPFTPDAGTWGSLLGACRLHG 764



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 4/227 (1%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           + S ++   L   A + +L   K+ H  ++    IS+ FV++ LI  Y+ CG+   ++ V
Sbjct: 579 FDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSV 638

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           F+ +  K+   +NS+I  Y  NHG   E L+LF  M  + + PD  T   I    G    
Sbjct: 639 FDMMDWKNEVSWNSIIAAY-GNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGL 697

Query: 137 LNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRI 194
           ++ G+     ++ + G    +     ++ +Y + G+  E  +    MP   + G+W   +
Sbjct: 698 VDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLL 757

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
                 G+  L   + +   ++   N   +  + N +   G+ +  L
Sbjct: 758 GACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVL 804


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 165/482 (34%), Positives = 271/482 (56%), Gaps = 14/482 (2%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
            P + T+L     L G+  Q+ LV +    +   L+N+LI     +   + AL L++++ 
Sbjct: 143 GPVLKTRL---QELIGE-DQAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLL 198

Query: 114 YSNVSPDDFTLATISK---LSGEIKDL-NVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
            +   P   TL ++ K   LS  +     + + +H  ++K+G    ++++N+L+ ++   
Sbjct: 199 RAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVHAGI 258

Query: 170 -GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
            G+ S+ L L       +  ++N  I+ +A +G    V  +R +FD+M  RN  +W+AM+
Sbjct: 259 LGRLSDALVLLRTAASVDASTFNTLITAYARAGR---VTDARALFDEMPARNAVSWSAMV 315

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288
           NGYVQ GD  EAL LF  MQ  D + P+   LV VL  C+ L  L  GK +HG+     +
Sbjct: 316 NGYVQAGDGREALGLFARMQ-ADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNI 374

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
              V L  AL+DMY+KCG +  A  VF+     K+ + W++++ G  +HG+G EA+ L++
Sbjct: 375 RITVFLGTALVDMYAKCGEMQLAMEVFKVMK-EKNVLAWTTMIKGLAMHGRGSEALELFS 433

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
           +M  LG KPD I  +G L AC  +GL+++G E+++S++  Y IKP  E   C+VD+L R 
Sbjct: 434 QMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARN 493

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468
           G L+ A + ++ MP++P   IWGAL++    H N E+ +   K  I+LEP+    YV L 
Sbjct: 494 GLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLG 553

Query: 469 NLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
           N+YA+S R  +  E+R +M+++G+ K+PGCS + I G  H F V D +HP    I    D
Sbjct: 554 NIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWD 613

Query: 529 DL 530
           ++
Sbjct: 614 EI 615


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 173/536 (32%), Positives = 283/536 (52%), Gaps = 39/536 (7%)

Query: 2   ILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTK--QSHSQILSLGHISNPFVST 59
           + S A N F  +         V     ++A+ RS  L    + H+  +  G  SN  +  
Sbjct: 332 MYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGN 391

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
            LI  Y  C         F  +  KD+  + ++I GY +N  H +AL L   +    +  
Sbjct: 392 SLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDV 451

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D   + +I      +K   +   IHG  +K G + D+++ N+++++Y             
Sbjct: 452 DPMMIGSILLACSGLKSEKLIKEIHGYVLK-GGLADILIQNAIVNVY------------- 497

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
                                G+ +LV  +R VF+ +  +++ +WT+MI   V NG   E
Sbjct: 498 ---------------------GELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIE 536

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           AL LF  + ++  IEP+ ++LVSVL   ++L  L  GK+IHGF IRK    +  + N+L+
Sbjct: 537 ALELFNSL-IETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLV 595

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           DMY++CG+++ AR +F +    +D I W+S+++  G+HG G +A+ L++KM      PD 
Sbjct: 596 DMYARCGTMENARNIF-NYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDH 654

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           IT + +L AC  SGL+ EG + +  + N Y+++P  E  AC+VD+L R+  L+ A  F++
Sbjct: 655 ITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVR 714

Query: 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
            MP+EPS  +W AL+ A  +H N+++ ++A K L+QL  EN  NYV +SN +A+  RW+ 
Sbjct: 715 NMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWND 774

Query: 480 VAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
           V E+R++MK   LKK PGCSWI +  K H F   DK+HP   +IY  L     +++
Sbjct: 775 VEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLK 830



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 130/537 (24%), Positives = 237/537 (44%), Gaps = 86/537 (16%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQP 71
            T+R          L++ A+H++L   +Q H+  L +  ++ + F+ TK +  Y  CG  
Sbjct: 39  TTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSF 98

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
             +  VF+ +  + ++ +N++I   V    + EA+EL+  M    VS D FT   + K  
Sbjct: 99  YDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC 158

Query: 132 GEIKDLNVGMLIHGLSIKIG-----FVVDVILA--------------------------- 159
           G  K+  +G  IHG+++K G     FV + ++A                           
Sbjct: 159 GAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVS 218

Query: 160 -NSLMSMYVKCGKFSECLNLFDEMPQRNVGS----------------------------- 189
            NS++S +V  G+  E L+LF  M +  V S                             
Sbjct: 219 WNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVIL 278

Query: 190 ----------WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
                      N  I+ +A+ G       + RVF  M  ++  +W  +++G VQN    +
Sbjct: 279 KSNHFTDVYVSNALIAMYANCGQME---DAERVFKSMLFKDCVSWNTLLSGMVQNDMYSD 335

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           A+  F +MQ   + +P++VS+++++        L  G ++H +AI+  ++ ++ + N+LI
Sbjct: 336 AINHFQDMQDSGQ-KPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLI 394

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           DMY KC  +      FE     KD I+W++I++GY  +    +A+ L  K+       D 
Sbjct: 395 DMYGKCCCVKYMGSAFEYMP-EKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDP 453

Query: 360 ITIVGVLSACGRSGLINEGL--EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
           + I  +L AC  SGL +E L  EI+  V+          I   +V++ G    +D A   
Sbjct: 454 MMIGSILLAC--SGLKSEKLIKEIHGYVLKGGL--ADILIQNAIVNVYGELALVDYARHV 509

Query: 418 IKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            +++  +   S W ++++  V +G +      + SLI+   E P     +S LYA++
Sbjct: 510 FESINSKDIVS-WTSMITCCVHNGLAIEALELFNSLIETNIE-PDLITLVSVLYAAA 564



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 167/392 (42%), Gaps = 54/392 (13%)

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVD-VILANSLMSMYVKCGKFSECLNLFDEMPQRNV 187
           +L    K L  G  +H   +K    +D V L    + MY KCG F + +           
Sbjct: 54  ELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAV----------- 102

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
                                  +VFD+M  R ++ W AMI   V  G   EA+ L+ EM
Sbjct: 103 -----------------------KVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEM 139

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
           ++   +  +  +   VL  C +      G +IHG A++      V +CNALI MY+KCG 
Sbjct: 140 RVLG-VSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGD 198

Query: 308 LDCARRVFEDSSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
           L  AR +F+     K D ++W+SI+S +   G+  EA+ L+ +M  +G + +  T V  L
Sbjct: 199 LGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSAL 258

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
            AC     I  G  I+  ++ +        +   ++ M    GQ++ A    K+M  +  
Sbjct: 259 QACEGPTFIKIGRGIHAVILKSNHFTDVY-VSNALIAMYANCGQMEDAERVFKSMLFKDC 317

Query: 427 PSIWGALVSASV---MHGNS--EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
            S W  L+S  V   M+ ++    QD+      Q   + P     L+ + AS R  + +A
Sbjct: 318 VS-WNTLLSGMVQNDMYSDAINHFQDM------QDSGQKPDQVSVLNMIAASGRSANLLA 370

Query: 482 --ELRTMMKDRGLKKSP--GCSWISIHGKTHC 509
             E+       G+  +   G S I ++GK  C
Sbjct: 371 GMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCC 402


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 262/489 (53%), Gaps = 13/489 (2%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T +IT Y        ++ VF ++       +N++I+GYV      EAL L   M +  + 
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIK------IGFVVDVILANSLMSMYVKCGKF 172
            DD T  TI      +    +G  +H   +K        F + V  +N+L+++Y K  K 
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSV--SNALITLYCKNNKV 344

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            E   +F  MP RN+ +WN  +SG+ ++G       ++  F++M  +N+   T MI+G  
Sbjct: 345 DEARKIFYAMPVRNIITWNAILSGYVNAGRME---EAKSFFEEMPVKNLLTLTVMISGLA 401

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG  DE L LF +M+L D  EP   +    L  CS L  L  G+Q+H   +       +
Sbjct: 402 QNGFGDEGLKLFKQMRL-DGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSL 460

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           S+ NA+I MY+KCG ++ A  VF     + D ++W+S+++  G HG G +A+ L+++M+ 
Sbjct: 461 SVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQHGHGVKAIELFDQMLK 519

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G  PD IT + VL+AC  +GL+ +G   +NS++ +Y I P  +  A +VD+  RAG   
Sbjct: 520 EGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFS 579

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A   I +MP +P   +W AL++   +HGN ++   A + L +L P+N   YV LSN+YA
Sbjct: 580 YARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYA 639

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
              RW+ VA++R +M+D+ ++K P CSWI +  K H F V D  HP  +S+Y  L+ L L
Sbjct: 640 DVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGL 699

Query: 533 IMRGAAASP 541
            M+     P
Sbjct: 700 EMKKLGYIP 708



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 206/440 (46%), Gaps = 56/440 (12%)

Query: 52  ISNP--FVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYVKNHGHNEALE 107
           I NP     T LITAY   G     + +FN   +  +D   YN++I GY  N   + ALE
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 108 LFSNMYYSNVSPDDFTLATI-SKLSGEIKDLNVGMLIHGLSIKIGF-VVDVILANSLMSM 165
           LF  M   +  PDDFT  ++ S L   + +      +H   +K G   V   + N+L+S+
Sbjct: 134 LFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSV 193

Query: 166 YVK--------CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           YVK        C        LFDEMP+R+  +W   I+G+  + D +    +R VF+ M 
Sbjct: 194 YVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLN---GAREVFEAMV 250

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
                AW AMI+GYV  G   EAL L  +M+    I+ + ++  +++  C+++     GK
Sbjct: 251 ENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLG-IQFDDITYTTIISACANVGSFQMGK 309

Query: 278 QIHGFAIRKELNHDVSLC----NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           Q+H + ++ ELN + S C    NALI +Y K   +D AR++F      ++ ITW++I+SG
Sbjct: 310 QVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPV-RNIITWNAILSG 368

Query: 334 Y-----------------------------GL--HGKGHEAVLLYNKMVCLGSKPDIITI 362
           Y                             GL  +G G E + L+ +M   G +P     
Sbjct: 369 YVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAF 428

Query: 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
            G L+AC   G +  G +++  +++    + +  +   ++ M  + G ++ A     TMP
Sbjct: 429 AGALTACSVLGALENGRQLHAQLVHL-GYESSLSVGNAMISMYAKCGVVEAAESVFVTMP 487

Query: 423 VEPSPSIWGALVSASVMHGN 442
                S W ++++A   HG+
Sbjct: 488 SVDLVS-WNSMIAALGQHGH 506



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 157/369 (42%), Gaps = 65/369 (17%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H   I  GF       N L+ MY K         LF+E+P  +  +    I+ + + G+
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGN 94

Query: 203 FSLVVRSRRVFD--QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
             L    R +F+   +  R+   + AMI GY  NGD   AL LF  M+ +D   P+  + 
Sbjct: 95  LEL---GREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMR-RDDFRPDDFTF 150

Query: 261 VSVLPTCSSLIGLSGGK----QIHGFAIRKELNH-DVSLCNALIDMYSK--------CGS 307
            SVL   S+L+   G +    Q+H   ++  +     S+ NAL+ +Y K        C +
Sbjct: 151 TSVL---SALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSA 207

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGY----GLHGKG----------------------- 340
           +  AR++F++    +D +TW+++++GY     L+G                         
Sbjct: 208 MVSARKLFDEMP-KRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVH 266

Query: 341 ----HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
                EA+ L  KM  LG + D IT   ++SAC   G    G +++  ++    + P   
Sbjct: 267 CGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKN-ELNPNHS 325

Query: 397 ICACV----VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE-----MQD 447
            C  V    + +  +  ++D A      MPV  +   W A++S  V  G  E      ++
Sbjct: 326 FCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSGYVNAGRMEEAKSFFEE 384

Query: 448 LAYKSLIQL 456
           +  K+L+ L
Sbjct: 385 MPVKNLLTL 393



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 123/291 (42%), Gaps = 42/291 (14%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           + N      +++ Y   G+  +++  F  +  K++     +I+G  +N   +E L+LF  
Sbjct: 356 VRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQ 415

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M      P DF  A        +  L  G  +H   + +G+   + + N+++SMY KCG 
Sbjct: 416 MRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGV 475

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                ++F  MP  ++ SWN  I   A+ G     V++  +FDQM               
Sbjct: 476 VEAAESVFVTMPSVDLVSWNSMI---AALGQHGHGVKAIELFDQM--------------- 517

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
                            LK+ + P++++ ++VL  CS    +  G+  H F    E ++ 
Sbjct: 518 -----------------LKEGVFPDRITFLTVLTACSHAGLVEKGR--HYFNSMLE-SYG 557

Query: 292 VSLCN----ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           ++ C      ++D++ + G    AR V +       A  W ++++G  +HG
Sbjct: 558 ITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHG 608



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 4/208 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  +Q H+Q++ LG+ S+  V   +I+ YA CG    ++ VF ++   D+  +NS+I 
Sbjct: 440 ALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIA 499

Query: 95  GYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGF 152
             +  HGH  +A+ELF  M    V PD  T  T+         +  G    + +    G 
Sbjct: 500 A-LGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGI 558

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVRSRR 211
                    ++ ++ + G FS    + D MP +     W   ++G    G+  L + +  
Sbjct: 559 TPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAE 618

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDE 239
              ++  +N   +  + N Y   G  +E
Sbjct: 619 QLFKLMPQNDGTYVLLSNIYADVGRWNE 646


>gi|357120059|ref|XP_003561748.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Brachypodium distachyon]
          Length = 596

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 271/492 (55%), Gaps = 9/492 (1%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V+    T + +   L  S T  S  +T + H+     G  ++ FVS  L+TAYA  G   
Sbjct: 109 VSPDEVTVSALLKSLAASGTGLSPLVTGEIHALAFLRGFGTDLFVSNGLVTAYANTGDIR 168

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS----NVSPDDFTLATIS 128
            ++ VF+ +  +DV  +NSLI+   +   + E LELFS +  +     V P++ T+ ++ 
Sbjct: 169 SARAVFDEMPRRDVVSWNSLISACTRVGCYRECLELFSGLVRARAIGGVQPNNVTVTSVL 228

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
               ++K ++ G+ +  ++ + G  +D+   NS++  Y KCG+      L + MP+++  
Sbjct: 229 HSCAQLKAVDFGVNVLRVAAESGLDMDIATWNSVVGFYAKCGRLQHARELLERMPKKDTV 288

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           S++  I+G+ ++G    V     +F Q   + +  W A+I+G +QNG   + L L  EM 
Sbjct: 289 SYSAMITGYMNNGH---VEEGMSLFRQADAKGINTWNALISGLIQNGRQSDVLGLLHEM- 344

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
           +   + PN  +L  ++P+      L G KQ HG+ IR + +   ++ +ALID YSK G L
Sbjct: 345 IGASLLPNAATLSIIIPSVPLFSTLLGAKQAHGYVIRNDYDQSNNVVSALIDAYSKAGFL 404

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
           D A++VFE    N+  I W+SI++    HG    A+ L+N+MV  G+ PD +T   VL+A
Sbjct: 405 DMAKKVFEWDE-NRSTIVWTSIIAAVAAHGDVAAALGLFNQMVRAGTCPDTVTFTVVLTA 463

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
           C   G + E  E+++S+   + I P  E  AC+  +L RAG L  AL+ +  MP EP+  
Sbjct: 464 CAHVGKVAEAREVFDSMQTVFGISPVMEQYACIASVLSRAGMLTDALELVNKMPFEPNAK 523

Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
           +WGAL++ +   G+ ++   A+  L  +EP+N  NY+ ++NLY+++ +W+    +R+M+ 
Sbjct: 524 VWGALLNGAAAVGDVQLGRFAFDRLFMIEPKNTGNYIVMANLYSNAGKWEDAEIIRSMLW 583

Query: 489 DRGLKKSPGCSW 500
             GL+K PGCSW
Sbjct: 584 GVGLEKVPGCSW 595



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 208/452 (46%), Gaps = 70/452 (15%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H +Q+ A    L   +Q H+++++L  I + F+++KLI+ Y+   +   ++ VF++I   
Sbjct: 19  HLIQLCADSGHLAAGQQLHARLVALSVIPSNFLASKLISLYSRTARLHDARRVFDAIPQP 78

Query: 85  DVYLYNS-LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK---LSGEIKDLNVG 140
           +++ +N+ LI   + +   + AL LF+    S VSPD+ T++ + K    SG      V 
Sbjct: 79  NLFAWNAILIALSLHSPEPSAALRLFAG---SGVSPDEVTVSALLKSLAASGTGLSPLVT 135

Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
             IH L+   GF  D+ ++N L++ Y   G       +FDEMP+R+V SWN  IS     
Sbjct: 136 GEIHALAFLRGFGTDLFVSNGLVTAYANTGDIRSARAVFDEMPRRDVVSWNSLISACTRV 195

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
           G +              R  +  ++ ++      G                 ++PN V++
Sbjct: 196 GCY--------------RECLELFSGLVRARAIGG-----------------VQPNNVTV 224

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            SVL +C+ L  +  G  +   A    L+ D++  N+++  Y+KCG L  AR + E    
Sbjct: 225 TSVLHSCAQLKAVDFGVNVLRVAAESGLDMDIATWNSVVGFYAKCGRLQHARELLERMP- 283

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNK---------------MVCLGSKPDIITIV-- 363
            KD +++S++++GY  +G   E + L+ +               ++  G + D++ ++  
Sbjct: 284 KKDTVSYSAMITGYMNNGHVEEGMSLFRQADAKGINTWNALISGLIQNGRQSDVLGLLHE 343

Query: 364 ----GVLSACGRSGLINEGLEIYNSVINT-----YRIK----PTTEICACVVDMLGRAGQ 410
                +L       +I   + ++++++       Y I+     +  + + ++D   +AG 
Sbjct: 344 MIGASLLPNAATLSIIIPSVPLFSTLLGAKQAHGYVIRNDYDQSNNVVSALIDAYSKAGF 403

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           LD A    +      S  +W ++++A   HG+
Sbjct: 404 LDMAKKVFE-WDENRSTIVWTSIIAAVAAHGD 434


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/496 (33%), Positives = 267/496 (53%), Gaps = 44/496 (8%)

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           +V  +N++++G  ++    EAL + ++M    + PD  T++++ K       L  GM IH
Sbjct: 256 NVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 315

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
              ++     DV    +L+ MY KCG+      + D +  RN+ +WN  ++G+A++G F 
Sbjct: 316 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFD 375

Query: 205 LVVRSRRVFDQMKRR---------------------------------------NVYAWT 225
           + +    + + MK+                                        NV +WT
Sbjct: 376 IALE---LVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWT 432

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           ++I+G   NG+ +++     EMQ KD ++P+ V++  +L  C+ L     GK++H FA+R
Sbjct: 433 SLISGSCHNGEYEDSFYFCHEMQ-KDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 491

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
           +  + D+ +  ALIDMYSK GSL  A+ +FE S   K+ +  +++++G  +HG+G EA+ 
Sbjct: 492 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFE-SIQQKNLVLCNAMLTGLAVHGQGREAIE 550

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           L++ M   G KPD IT   +L+AC   GL+ EG E ++S+   Y +KPTTE  AC+VD+L
Sbjct: 551 LFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLL 610

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
            R G LD A+DFI+  P++P  S WGAL++   +HGN  + ++A ++L  LEP N +NY+
Sbjct: 611 ARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYL 670

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYE 525
            + NLY   R +D    L+  MK RG+   PG SWI I    H F V  K HP +  IYE
Sbjct: 671 LMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYE 730

Query: 526 MLDDLILIMRGAAASP 541
            L  L+  ++ A   P
Sbjct: 731 ELIRLVFQIKKAGYVP 746



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 187/420 (44%), Gaps = 46/420 (10%)

Query: 33  HR-SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ-PTQSQLVFNSIQH--KDVYL 88
           HR + +L  Q HS  +  G   +P V+  L+   A  G+ P+ ++L+  + +   KD  L
Sbjct: 64  HRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVL 123

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +N  +    +    +EA+ +F  M    V  D +T A +    G    L  G  +H  ++
Sbjct: 124 WNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYAL 183

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K+      ++   L  MY +    +    + D M   +V  WN  ++  A  G   LV  
Sbjct: 184 KLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLG---LVDD 240

Query: 209 SRRVFDQMKRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           +  +  +M R     NV  W  +++G  ++G   EAL +   M LK  + P+  ++ S+L
Sbjct: 241 ALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASM-LKQGLRPDATTVSSLL 299

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            + ++   L  G +IH F +R +L  DV    AL+DMY+KCG LDCA++V  D+  +++ 
Sbjct: 300 KSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVL-DALEHRNL 358

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
            TW+S+V+GY   G+   A+ L   M      PDI T                    +N 
Sbjct: 359 TTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITT--------------------WNG 398

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +I  Y              M G++ Q    L  IK   V P+   W +L+S S  +G  E
Sbjct: 399 LITGY-------------SMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYE 445



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 140/349 (40%), Gaps = 40/349 (11%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H L+++ G   D  +  +L+ +  + G+   C  L  E  +                  
Sbjct: 74  LHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGA--------------- 118

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                           ++   W   +    +  + DEA+ +F EMQ +  +  +  +   
Sbjct: 119 ----------------KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG-VPADGYTCAR 161

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL  C     L  G+ +H +A++  L+    +   L  MY++   +  A RV  D+    
Sbjct: 162 VLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVL-DAMGAG 220

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
             + W+++V+     G   +A+ L  +M   G +P++ T   VLS C R G   E L + 
Sbjct: 221 SVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVV 280

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALD---FIKTMPVEPSPSIWGALVSASVM 439
            S++    ++P     + ++  +   G L   ++   F     +EP      ALV    M
Sbjct: 281 ASMLKQ-GLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVD---M 336

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
           +      D A K L  LE  N + + SL   YA++ R+D   EL  +MK
Sbjct: 337 YAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMK 385



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 124/293 (42%), Gaps = 44/293 (15%)

Query: 54  NPFVST--KLITAYALCGQPTQSQLVFNSIQHK----DVYLYNSLINGYVKNHGHNEALE 107
           +P ++T   LIT Y++ GQ +Q+ L+   I+      +V  + SLI+G   N  + ++  
Sbjct: 390 DPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFY 449

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
               M    V P   T++ + +    +     G  +H  +++  +  D++++ +L+ MY 
Sbjct: 450 FCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYS 509

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           K G       +F+ + Q+N+   N                                  AM
Sbjct: 510 KGGSLVSAKVIFESIQQKNLVLCN----------------------------------AM 535

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL--SGGKQIHGFAIR 285
           + G   +G   EA+ LF +M     ++P+ ++  ++L  C S+ GL   G +       +
Sbjct: 536 LTGLAVHGQGREAIELFHDM-WNSGLKPDSITFTALLTACRSM-GLVTEGWEYFDSMETK 593

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
             +         ++D+ ++CG LD A    E S  +  A  W ++++G  +HG
Sbjct: 594 YGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHG 646



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 12/221 (5%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           K  K+ H   L   +  +  VST LI  Y+  G    ++++F SIQ K++ L N+++ G 
Sbjct: 480 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 539

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL----SIKIGF 152
             +    EA+ELF +M+ S + PD  T   +          ++G++  G     S++  +
Sbjct: 540 AVHGQGREAIELFHDMWNSGLKPDSITFTALLTAC-----RSMGLVTEGWEYFDSMETKY 594

Query: 153 VVDVILAN--SLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRS 209
            V     N   ++ +  +CG   E ++  +  P       W   ++G +  G+ +L   +
Sbjct: 595 GVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVA 654

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
            R    ++  N   +  M+N Y      DEA  L   M+ +
Sbjct: 655 ARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKAR 695


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/520 (31%), Positives = 271/520 (52%), Gaps = 36/520 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV   L      R L L K  ++ +L  G +    V   LI  YA CG    ++ VFNS+
Sbjct: 309 TVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSM 368

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + KD   +NS+I+GY+++    EA++LF  M       D  T   +  LS  + DL  G 
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGK 428

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   IK G  +D+ ++N+L+ MY KCG+  + L                         
Sbjct: 429 GLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSL------------------------- 463

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                    ++F+ M   +   W  +I+  V+ GD    L +  +M+ K+++ P+  + +
Sbjct: 464 ---------KIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMR-KNKVVPDMATFL 513

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
             LP C+SL     GK+IH   +R     ++ + NALI+MYSKCG L+ + RVFE  S  
Sbjct: 514 VTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMS-R 572

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +D +TW+ ++  YG++G+G +A+  +  M   G  PD +  + ++ AC  SGL+ +GL  
Sbjct: 573 RDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLAC 632

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  +   Y+I P  E  ACVVD+L R+ ++ +A +FI+ MP+EP  SIW +++ A    G
Sbjct: 633 FEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSG 692

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           + E  +   + +I+L P++P   +  SN YA+ R+WD V+ +R  ++D+ +KK+PG SWI
Sbjct: 693 DMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWI 752

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            I  K H F   D + P S +I++ L+ L  +M      P
Sbjct: 753 EIGKKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKEGYIP 792



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 216/433 (49%), Gaps = 41/433 (9%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ-HKDVYLYNSLINGYVK 98
           ++ H+ ++SLG   + F S KLI  Y+    P  S  VF  +   K+VY++NS+I  + K
Sbjct: 24  RRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSK 83

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
           N    +ALE +  +  S VSPD +T  ++ K    + D  +G L++   +++GF  D+ +
Sbjct: 84  NGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYV 143

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
            N+L+ MY + G  S    +FDEMP R++ SWN  ISG++S G +               
Sbjct: 144 GNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYY--------------- 188

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
                              +EAL ++ E++    I P+  ++ SVLP  ++L+ +  G+ 
Sbjct: 189 -------------------EEALEIYHELR-NSWIVPDSFTVSSVLPAFANLLVVKQGQG 228

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           +HGF ++  +N    + N L+ MY K      ARRVF D    +D++T+++++ GY    
Sbjct: 229 LHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVF-DEMVVRDSVTYNTMICGYLKLE 287

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              E+V ++ + +    KPDI+T+  VL ACG    ++    IYN ++    +  +T + 
Sbjct: 288 MVEESVKMFLENLD-QFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLEST-VK 345

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQDLAYKSLIQLE 457
             ++D+  + G +  A D   +M  + + S W +++S  +  G+  E   L    +I  E
Sbjct: 346 NILIDVYAKCGDMITARDVFNSMECKDTVS-WNSIISGYIQSGDLMEAMKLFKMMMIMEE 404

Query: 458 PENPSNYVSLSNL 470
             +   Y+ L +L
Sbjct: 405 QADHITYLMLISL 417



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 204/400 (51%), Gaps = 39/400 (9%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           + QIL +G  S+ +V   L+  Y+  G  ++++ VF+ +  +D+  +NSLI+GY  +  +
Sbjct: 129 YKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EALE++  +  S + PD FT++++      +  +  G  +HG ++K G     ++ N L
Sbjct: 189 EEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGL 248

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           ++MY+K  + ++   +FDEM  R+  ++N                               
Sbjct: 249 LAMYLKFSRPTDARRVFDEMVVRDSVTYN------------------------------- 277

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
               MI GY++   ++E++ +FLE    D+ +P+ +++ SVL  C  L  LS  K I+ +
Sbjct: 278 ---TMICGYLKLEMVEESVKMFLENL--DQFKPDILTVTSVLCACGHLRDLSLAKYIYNY 332

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            +R     + ++ N LID+Y+KCG +  AR VF +S   KD ++W+SI+SGY   G   E
Sbjct: 333 MLRAGFVLESTVKNILIDVYAKCGDMITARDVF-NSMECKDTVSWNSIISGYIQSGDLME 391

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ L+  M+ +  + D IT + ++S   R   +  G  ++++ I +  I     +   ++
Sbjct: 392 AMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKS-GIYIDLSVSNALI 450

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
           DM  + G++  +L    +M    + + W  ++SA V  G+
Sbjct: 451 DMYAKCGEVGDSLKIFNSMGTLDTVT-WNTVISACVRFGD 489



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 6/191 (3%)

Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
            +VS   +    SS   L+  ++IH   I   L+        LID YS   +   +  VF
Sbjct: 3   TRVSSAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVF 62

Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
              S  K+   W+SI+  +  +G   +A+  Y K+      PD  T   V+ AC  +GL 
Sbjct: 63  RRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKAC--AGLF 120

Query: 376 NE--GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
           +   G  +Y  ++     +    +   +VDM  R G L RA      MPV    S W +L
Sbjct: 121 DAEMGDLVYKQILEM-GFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVS-WNSL 178

Query: 434 VSASVMHGNSE 444
           +S    HG  E
Sbjct: 179 ISGYSSHGYYE 189



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 15/203 (7%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
           AT    L + A+  + +L K+ H  +L  G+ S   +   LI  Y+ CG    S  VF  
Sbjct: 510 ATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFER 569

Query: 81  IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNV 139
           +  +DV  +  +I  Y       +ALE F +M  S + PD    +A I   S      + 
Sbjct: 570 MSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACS------HS 623

Query: 140 GMLIHGLS----IKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNV 192
           G++  GL+    +K  + +D ++ +   ++ +  +  K S+       MP + +   W  
Sbjct: 624 GLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWAS 683

Query: 193 RISGHASSGDFSLVVR-SRRVFD 214
            +    +SGD     R SRR+ +
Sbjct: 684 VLRACRTSGDMETAERVSRRIIE 706


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 166/525 (31%), Positives = 278/525 (52%), Gaps = 6/525 (1%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           +S T+   +   A  R L + ++  + I  LG   N  +   L+  Y  CG    ++ +F
Sbjct: 231 SSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLF 290

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           +    +++ LYN++++ Y +     EAL +   M      PD  T+ +    S ++ DL 
Sbjct: 291 DECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLF 350

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G + HG  I+ G      + N ++ MY+KCGK      +FD M  + V SWN   +G  
Sbjct: 351 YGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFI 410

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
            +GD   V  +  VF+Q+  RN   W  MI+G VQ    ++A+ LF EMQ  + I+ ++V
Sbjct: 411 RNGD---VESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQ-GEGIKADRV 466

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +++ +   C  L      K +H +  +  +  D+ L  AL+DM+++CG    A +VF   
Sbjct: 467 TMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKM 526

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
           +  +D   W++ +    + G G  A  L+N+M+  G KPD++  V VL+AC   G + +G
Sbjct: 527 T-ERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG 585

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           L I+ S++  + I P  E   C+VD+LGRAG L  A D IK+MP+EP+  +WG+L++A  
Sbjct: 586 LHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACR 644

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           +H N EM   A + + +L P+    +V LSN+YAS+ +W  VA +R  ++++G++K PG 
Sbjct: 645 VHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGS 704

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           S + ++G  H F+  D++HP    I  ML ++      A   P L
Sbjct: 705 SSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDL 749



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 219/473 (46%), Gaps = 59/473 (12%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ-------SQLVFNSIQHKD- 85
           ++L   KQ H QI   G    P   TKL+ A A    P          +L    ++  D 
Sbjct: 36  KTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDA 95

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           +++ NSLI GY       EA+ L+  M    V+P+ +T   +     +I     G+ +HG
Sbjct: 96  LFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHG 155

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             +K+G   DV + N L+  Y +CG                         GH        
Sbjct: 156 SVVKMGLEEDVFIQNCLIHFYAECGHMDH---------------------GH-------- 186

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                +VF+ M  RNV +WT++I GY +     EA+ LF EM ++  I P+ V++V V+ 
Sbjct: 187 -----KVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM-VEAGIRPSSVTMVCVIS 240

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C+ L  L  G+++  +     L  +  + NAL+DMY KCG++D A+R+F D   +++ +
Sbjct: 241 ACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLF-DECVDRNLV 299

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
            +++I+S Y   G   EA+ + ++M+  G +PD +T++  +SA  +  L++     Y  V
Sbjct: 300 LYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQ--LVD---LFYGKV 354

Query: 386 INTYRIKPTTE----ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
            + Y I+   E    I   ++DM  + G+ + A      M  +   S W +L +  + +G
Sbjct: 355 CHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVS-WNSLTAGFIRNG 413

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSL-SNLYASSRRWDAVAELRTMMKDRGLK 493
           + E    A++   Q+   N   + ++ S L   S   DA+ EL   M+  G+K
Sbjct: 414 DVES---AWEVFNQIPERNAVFWNTMISGLVQKSLFEDAI-ELFREMQGEGIK 462


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 172/517 (33%), Positives = 283/517 (54%), Gaps = 19/517 (3%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H   L  G   + FV   ++  YA CG   ++  VF  ++ KDV  +N+++ GY + 
Sbjct: 251 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 310

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATI------SKLSGEIKDLNVGMLIHGLSIKIGFV 153
              ++AL LF  +    +  +  T + +        L  E  D+   M + G    +  +
Sbjct: 311 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTL 370

Query: 154 VDVI----LANSLM-SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           V ++    LA +L+      C      LNL +  P  ++   N  I  ++          
Sbjct: 371 VSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKA--- 427

Query: 209 SRRVFDQM--KRRNVYAWTAMINGYVQNGDLDEALVLFLEM-QLKDRIEPNKVSLVSVLP 265
           +R +FD +  K R+V  WT +I G  Q+G+ +EAL LF +M Q  + + PN  ++   L 
Sbjct: 428 ARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALM 487

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHD-VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            C+ L  L  G+QIH + +R       + + N LIDMYSK G +D AR VF D+   ++ 
Sbjct: 488 ACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVF-DNMHQRNG 546

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           ++W+S+++GYG+HG+G EA+ ++ +M  +G  PD +T V VL AC  SG++++G+  +N 
Sbjct: 547 VSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNG 606

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +   + + P  E  AC+VD+L RAG+LD A++ I+ MP++P+P++W AL+SA  ++ N E
Sbjct: 607 MNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVE 666

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           + + A   L++LE  N  +Y  LSN+YA++R W  VA +R +MK+ G+KK PGCSW+   
Sbjct: 667 LGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGR 726

Query: 505 GKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
             T  F   D +HP S  IY++L DL+  ++     P
Sbjct: 727 KGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVP 763



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 219/441 (49%), Gaps = 23/441 (5%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+      S +     H+ + + G   N FV   L++ Y  CG    ++ VF+ +
Sbjct: 128 TFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 187

Query: 82  QHK---DVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDL 137
           + +   D+  +NS++  Y++      A+++F  M     + PD  +L  +      +   
Sbjct: 188 RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAW 247

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
           + G  +HG +++ G   DV + N+++ MY KCG   E   +F+ M  ++V SWN  ++G+
Sbjct: 248 SRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGY 307

Query: 198 ASSGDFSLVVRSRRVFDQMKRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
           +  G F   +    +F++++      NV  W+A+I GY Q G   EAL +F +M+L    
Sbjct: 308 SQIGRFDDAL---GLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGS- 363

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-------HDVSLCNALIDMYSKCG 306
           EPN V+LVS+L  C+    L  GK+ H  AI+  LN        D+ + NALIDMYSKC 
Sbjct: 364 EPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCK 423

Query: 307 SLDCARRVFE-DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS--KPDIITIV 363
           S   AR +F+     ++  +TW+ ++ G   HG+ +EA+ L+++M+   +   P+  TI 
Sbjct: 424 SPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTIS 483

Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
             L AC R G +  G +I+  V+          +  C++DM  ++G +D A      M  
Sbjct: 484 CALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQ 543

Query: 424 EPSPSIWGALVSASVMHGNSE 444
               S W +L++   MHG  E
Sbjct: 544 RNGVS-WTSLMTGYGMHGRGE 563



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/505 (26%), Positives = 223/505 (44%), Gaps = 94/505 (18%)

Query: 8   NTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
            TF   T+ + T  T   F Q     +SL   +  H Q+L  G   +P   T +I+ Y  
Sbjct: 18  TTFFFSTASSTTDLTSTLFHQC----KSLASAELIHQQLLVQGLPHDP---THIISMYLT 70

Query: 68  CGQPTQSQLVFNSIQHKD--VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125
              P ++  V   +      V+ +N LI   V      + L+L+  M      PD +T  
Sbjct: 71  FNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFP 130

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
            + K  GEI     G  +H +    GF  +V + N L+SMY +CG +     +FDEM +R
Sbjct: 131 FVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRER 190

Query: 186 NVG---SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
            VG   SWN  ++ +   GD    +R+ ++F++M                   DL     
Sbjct: 191 GVGDLVSWNSIVAAYMQGGD---SIRAMKMFERMTE-----------------DLG---- 226

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302
                     I P+ VSLV+VLP C+S+   S GKQ+HG+A+R  L  DV + NA++DMY
Sbjct: 227 ----------IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMY 276

Query: 303 SKCGSLDCARRVFE----------------------------------DSSFNKDAITWS 328
           +KCG ++ A +VFE                                  +     + +TWS
Sbjct: 277 AKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWS 336

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY----NS 384
           ++++GY   G G EA+ ++ +M   GS+P+++T+V +LS C  +G +  G E +      
Sbjct: 337 AVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKW 396

Query: 385 VINTYRIKPTTEICA--CVVDMLG--RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
           ++N     P  ++     ++DM    ++ +  RA+ F    P + S   W  L+  +  H
Sbjct: 397 ILNLDENDPGDDLMVINALIDMYSKCKSPKAARAM-FDLIPPKDRSVVTWTVLIGGNAQH 455

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYV 465
           G +      +  ++Q     P N+V
Sbjct: 456 GEANEALELFSQMLQ-----PDNFV 475


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 169/566 (29%), Positives = 298/566 (52%), Gaps = 67/566 (11%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H+ ++  G      V   LI+ Y+  G    ++ VF+ ++ +D   +NS+I GYV+N 
Sbjct: 215 QVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNG 274

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
              E  E+F+ M  + V P   T A++ K    +++L +  L+   ++K GF  D I+  
Sbjct: 275 QDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVIT 334

Query: 161 SLMSMYVKC--------------------------------GKFSECLNLFDEMPQRNVG 188
           +LM    KC                                G   + +NLF +M +  V 
Sbjct: 335 ALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVK 394

Query: 189 ----SWNVRISGH-------------------ASSGDFSLV---------VRSRRVFDQM 216
               +++  ++ H                   +SS   +L+         + + +VF+ +
Sbjct: 395 PNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEII 454

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS-G 275
           + +++ AW+AM+ GY Q G+ +EA  LF ++ +K+ I+PN+ +  SV+  C+S    +  
Sbjct: 455 EAKDLMAWSAMLAGYAQTGETEEAAKLFHQL-IKEGIKPNEFTFSSVINACASPTAAAEQ 513

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           GKQ H +AI+  LN+ + + +AL+ MY+K G++D A  VF+     +D ++W+S++SGY 
Sbjct: 514 GKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYS 572

Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
            HG+  +A+ ++++M       D +T +GV++AC  +GL+ +G + +NS+IN + I PT 
Sbjct: 573 QHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTM 632

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           +  +C++D+  RAG L++A+  I  MP  P  ++W  L+ A+ +H N E+ +LA + LI 
Sbjct: 633 KHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLIS 692

Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
           L+PE+ + YV LSN+YA++  W     +R +M  R +KK PG SWI +  KT+ F   D 
Sbjct: 693 LQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDL 752

Query: 516 AHPCSVSIYEMLDDLILIMRGAAASP 541
            HP S  IY  L +L + ++ A   P
Sbjct: 753 THPLSNQIYSKLSELSIRLKDAGYQP 778



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 200/442 (45%), Gaps = 50/442 (11%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           KL +Q H Q +  G + +  V T L+  Y         + VF+ +  ++V  + SL+ GY
Sbjct: 110 KLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGY 169

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
             N  +    ELF  M Y  V P+ +T++T+         + +G+ +H + +K GF   +
Sbjct: 170 SWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAI 229

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
            + NSL+S+Y + G   +                                  +R VFD+M
Sbjct: 230 PVFNSLISLYSRLGMLRD----------------------------------ARDVFDKM 255

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
           + R+   W +MI GYV+NG   E   +F +MQL   ++P  ++  SV+ +C+SL  L+  
Sbjct: 256 EIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAG-VKPTHMTFASVIKSCASLRELALV 314

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           K +   A++     D  +  AL+   SKC  +D A  +F      K+ ++W++++SG   
Sbjct: 315 KLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQ 374

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           +G   +AV L+++M   G KP+  T   +L+             ++ S ++   IK   E
Sbjct: 375 NGGNDQAVNLFSQMRREGVKPNHFTYSAILTV---------HYPVFVSEMHAEVIKTNYE 425

Query: 397 ICACV-VDMLGRAGQLDRALDFIKTMPVEPSPSI--WGALVSASVMHGNSEMQDLAYKSL 453
             + V   +L    +L   +D +K   +  +  +  W A+++     G +E     +  L
Sbjct: 426 RSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQL 485

Query: 454 IQ--LEPENPSNYVSLSNLYAS 473
           I+  ++P N   + S+ N  AS
Sbjct: 486 IKEGIKP-NEFTFSSVINACAS 506



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 197/424 (46%), Gaps = 56/424 (13%)

Query: 54  NPF-------VSTKLITAYALCGQPTQSQLVFNSIQHKDVYL--YNSLINGYVKNHGHNE 104
           NPF       +S K I+   LC  P  +  +F+ I H+   L  +N L+  Y ++    E
Sbjct: 18  NPFFRFIHYSISLKFISNTVLC-VPHIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKE 76

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           AL LF ++ +S++ PD+ TL+ +  +     D  +G  +H   +K G V  V +  SL+ 
Sbjct: 77  ALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVD 136

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MY+K    ++   +FDEM +RNV SW   ++G                         Y+W
Sbjct: 137 MYMKTENVNDGRRVFDEMGERNVVSWTSLLAG-------------------------YSW 171

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
             +  GYV          LF +MQ +  + PN+ ++ +V+    +   +  G Q+H   +
Sbjct: 172 NGLY-GYVWE--------LFCQMQYEG-VLPNRYTVSTVIAALVNEGVVGIGLQVHAMVV 221

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
           +      + + N+LI +YS+ G L  AR VF+     +D +TW+S+++GY  +G+  E  
Sbjct: 222 KHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEI-RDWVTWNSMIAGYVRNGQDLEVF 280

Query: 345 LLYNKMVCLGSKPDIITIVGVLSACG--RSGLINEGLE--IYNSVINTYRIKPTTEICAC 400
            ++NKM   G KP  +T   V+ +C   R   + + ++     S   T +I  T  + A 
Sbjct: 281 EIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVA- 339

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
               L +  ++D AL     M    +   W A++S  + +G ++ Q +   S ++ E   
Sbjct: 340 ----LSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGND-QAVNLFSQMRREGVK 394

Query: 461 PSNY 464
           P+++
Sbjct: 395 PNHF 398



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 1/145 (0%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           KQ H+  + +   +   VS+ L+T YA  G    +  VF   + +D+  +NS+I+GY ++
Sbjct: 515 KQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQH 574

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               +ALE+F  M   N+  D  T   +         +  G       I    +   +  
Sbjct: 575 GQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKH 634

Query: 160 NSLM-SMYVKCGKFSECLNLFDEMP 183
            S M  +Y + G   + + + +EMP
Sbjct: 635 YSCMIDLYSRAGMLEKAMGIINEMP 659


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/496 (33%), Positives = 267/496 (53%), Gaps = 44/496 (8%)

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           +V  +N++++G  ++    EAL + ++M    + PD  T++++ K       L  GM IH
Sbjct: 256 NVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 315

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
              ++     DV    +L+ MY KCG+      + D +  RN+ +WN  ++G+A++G F 
Sbjct: 316 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFD 375

Query: 205 LVVRSRRVFDQMKRR---------------------------------------NVYAWT 225
           + +    + + MK+                                        NV +WT
Sbjct: 376 IALE---LVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWT 432

Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
           ++I+G   NG+ +++     EMQ KD ++P+ V++  +L  C+ L     GK++H FA+R
Sbjct: 433 SLISGSCHNGEYEDSFYFCHEMQ-KDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 491

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
           +  + D+ +  ALIDMYSK GSL  A+ +FE S   K+ +  +++++G  +HG+G EA+ 
Sbjct: 492 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFE-SIQQKNLVLCNAMLTGLAVHGQGREAIE 550

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405
           L++ M   G KPD IT   +L+AC   GL+ EG E ++S+   Y +KPTTE  AC+VD+L
Sbjct: 551 LFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLL 610

Query: 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465
            R G LD A+DFI+  P++P  S WGAL++   +HGN  + ++A ++L  LEP N +NY+
Sbjct: 611 ARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYL 670

Query: 466 SLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYE 525
            + NLY   R +D    L+  MK RG+   PG SWI I    H F V  K HP +  IYE
Sbjct: 671 LMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYE 730

Query: 526 MLDDLILIMRGAAASP 541
            L  L+  ++ A   P
Sbjct: 731 ELIRLVFQIKKAGYVP 746



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 187/420 (44%), Gaps = 46/420 (10%)

Query: 33  HR-SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ-PTQSQLVFNSIQH--KDVYL 88
           HR + +L  Q HS  +  G   +P V+  L+   A  G+ P+ ++L+  + +   KD  L
Sbjct: 64  HRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVL 123

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           +N  +    +    +EA+ +F  M    V  D +T A +    G    L  G  +H  ++
Sbjct: 124 WNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYAL 183

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K+      ++   L  MY +    +    + D M   +V  WN  ++  A  G   LV  
Sbjct: 184 KLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLG---LVDD 240

Query: 209 SRRVFDQMKRR----NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           +  +  +M R     NV  W  +++G  ++G   EAL +   M LK  + P+  ++ S+L
Sbjct: 241 ALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASM-LKQGLRPDATTVSSLL 299

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            + ++   L  G +IH F +R +L  DV    AL+DMY+KCG LDCA++V  D+  +++ 
Sbjct: 300 KSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVL-DALEHRNL 358

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
            TW+S+V+GY   G+   A+ L   M      PDI T                    +N 
Sbjct: 359 TTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITT--------------------WNG 398

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +I  Y              M G++ Q    L  IK   V P+   W +L+S S  +G  E
Sbjct: 399 LITGY-------------SMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYE 445



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 140/349 (40%), Gaps = 40/349 (11%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H L+++ G   D  +  +L+ +  + G+   C  L  E  +                  
Sbjct: 74  LHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGA--------------- 118

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                           ++   W   +    +  + DEA+ +F EMQ +  +  +  +   
Sbjct: 119 ----------------KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG-VPADGYTCAR 161

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
           VL  C     L  G+ +H +A++  L+    +   L  MY++   +  A RV  D+    
Sbjct: 162 VLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVL-DAMGAG 220

Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
             + W+++V+     G   +A+ L  +M   G +P++ T   VLS C R G   E L + 
Sbjct: 221 SVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVV 280

Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALD---FIKTMPVEPSPSIWGALVSASVM 439
            S++    ++P     + ++  +   G L   ++   F     +EP      ALV    M
Sbjct: 281 ASMLKQ-GLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVD---M 336

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
           +      D A K L  LE  N + + SL   YA++ R+D   EL  +MK
Sbjct: 337 YAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMK 385



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 124/293 (42%), Gaps = 44/293 (15%)

Query: 54  NPFVST--KLITAYALCGQPTQSQLVFNSIQHK----DVYLYNSLINGYVKNHGHNEALE 107
           +P ++T   LIT Y++ GQ +Q+ L+   I+      +V  + SLI+G   N  + ++  
Sbjct: 390 DPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFY 449

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
               M    V P   T++ + +    +     G  +H  +++  +  D++++ +L+ MY 
Sbjct: 450 FCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYS 509

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAM 227
           K G       +F+ + Q+N+   N                                  AM
Sbjct: 510 KGGSLVSAKVIFESIQQKNLVLCN----------------------------------AM 535

Query: 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL--SGGKQIHGFAIR 285
           + G   +G   EA+ LF +M     ++P+ ++  ++L  C S+ GL   G +       +
Sbjct: 536 LTGLAVHGQGREAIELFHDM-WNSGLKPDSITFTALLTACRSM-GLVTEGWEYFDSMETK 593

Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
             +         ++D+ ++CG LD A    E S  +  A  W ++++G  +HG
Sbjct: 594 YGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHG 646



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 12/221 (5%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           K  K+ H   L   +  +  VST LI  Y+  G    ++++F SIQ K++ L N+++ G 
Sbjct: 480 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 539

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL----SIKIGF 152
             +    EA+ELF +M+ S + PD  T   +          ++G++  G     S++  +
Sbjct: 540 AVHGQGREAIELFHDMWNSGLKPDSITFTALLTAC-----RSMGLVTEGWEYFDSMETKY 594

Query: 153 VVDVILAN--SLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRS 209
            V     N   ++ +  +CG   E ++  +  P       W   ++G +  G+ +L   +
Sbjct: 595 GVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVA 654

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
            R    ++  N   +  M+N Y      DEA  L   M+ +
Sbjct: 655 ARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKAR 695


>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
 gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
          Length = 438

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 247/425 (58%), Gaps = 6/425 (1%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M    + PD  T   ++K +  +    +G+ IHG  IK GF +D  +ANSL+ MY  CG 
Sbjct: 1   MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGD 60

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                 +FD  P +N+ SWN  + G+A  G   L   +R +FD M  R+V +W+ +I+GY
Sbjct: 61  IVYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDL---ARGLFDLMPERDVRSWSCLIDGY 117

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
            ++G+  +A+ +F +M+     + N+V++VSVL  C+ L  L  G+ +H + +      +
Sbjct: 118 AKSGNYGDAMAVFEKMRTSGP-KANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELN 176

Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           + L  +LIDMY+KCG+++ A  VF   S  K D + W++++ G   HG   E++ LY +M
Sbjct: 177 LVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEM 236

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
              G KPD IT + +LSAC   GL+ +   ++   +    + P TE  AC+VD++ RAGQ
Sbjct: 237 QIAGIKPDEITFLCLLSACAHGGLVKQASYVFEG-LGKNGMTPKTEHYACMVDVMARAGQ 295

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           +  A  F+  MP+EP+ S+ GAL+S  + HG  ++ +L  K LI+L+PE+   YV LSN+
Sbjct: 296 VAEAYQFLCQMPLEPTASMLGALLSGCMNHGKLDLAELIGKKLIELDPEHDGRYVGLSNV 355

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           YA  RRWD    +R  M+ RG+KK+PG S++ + G  H F   DK+HP S  IY ML  +
Sbjct: 356 YAIGRRWDEARIMREAMERRGVKKTPGYSFLEMSGAHHRFIAHDKSHPSSEQIYTMLSFI 415

Query: 531 ILIMR 535
           +  M+
Sbjct: 416 VSQMQ 420



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 132/298 (44%), Gaps = 33/298 (11%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           ++  YA CG    ++ +F+ +  +DV  ++ LI+GY K+  + +A+ +F  M  S    +
Sbjct: 82  MVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTSGPKAN 141

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
           + T+ ++      +  L+ G ++H   +  GF ++++L  SL+ MY KCG   E   +F 
Sbjct: 142 EVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFAVF- 200

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
               R V                            +++ +V  W AMI G   +G + E+
Sbjct: 201 ----RGV---------------------------SLRKSDVLIWNAMIGGLATHGLVKES 229

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
           L L+ EMQ+   I+P++++ + +L  C+    +     +     +  +         ++D
Sbjct: 230 LDLYTEMQIAG-IKPDEITFLCLLSACAHGGLVKQASYVFEGLGKNGMTPKTEHYACMVD 288

Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
           + ++ G +  A +          A    +++SG   HGK   A L+  K++ L  + D
Sbjct: 289 VMARAGQVAEAYQFLCQMPLEPTASMLGALLSGCMNHGKLDLAELIGKKLIELDPEHD 346


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 152/451 (33%), Positives = 260/451 (57%), Gaps = 10/451 (2%)

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISK--- 129
           Q+ LV + +  +   L+++LI  +  +     AL L++++  + + P   TL ++ K   
Sbjct: 40  QAALVTSGLLRRSAELHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLA 99

Query: 130 LSGEIKDLN-VGMLIHGLSIKIGFVVDVILANSLMSMYVKC-GKFSECLNLFDEMPQRNV 187
           LS  +     + + +H  ++++G    +++ N+L+ ++    G+ ++   L       + 
Sbjct: 100 LSPAVPGARRLALAVHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDA 159

Query: 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247
            ++N  I+ HA +G    V  +R +FD+M  RN  +W+AM+NGYVQ GD  EAL +F +M
Sbjct: 160 STFNTLITAHARAGR---VADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQM 216

Query: 248 QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
           Q +  + P+   LV VL  C+ L  L  GK +HG+     +   V L  AL+DMY+KCG 
Sbjct: 217 QAQG-VRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGE 275

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
           +     VFE    +K+ + W++++ G  +HG+G +++ L+++M   G KPD I  +G L 
Sbjct: 276 VQLGMEVFEGMK-DKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALC 334

Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
           AC  +GL+++G E++NS++N Y IKP  E   C+VD+L R G L  A D ++ MP++P  
Sbjct: 335 ACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDA 394

Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
            IWGAL++    H N E+ +   K  I+LEP+    YV L N+Y++S R  +  E+R +M
Sbjct: 395 LIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLM 454

Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
           +++G++K+PGCS + I G  H F V D +HP
Sbjct: 455 REKGVEKTPGCSNVEIKGVIHQFIVGDLSHP 485



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 126/282 (44%), Gaps = 44/282 (15%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           LITA+A  G+   ++ +F+ +  ++   +++++NGYV+     EAL +FS M    V PD
Sbjct: 165 LITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPD 224

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
           D  L  +     ++  L  G  +HG        + V L  +L+ MY KCG+    + +F+
Sbjct: 225 DTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFE 284

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            M  +NV +W                                  T MI G   +G   ++
Sbjct: 285 GMKDKNVLAW----------------------------------TTMIKGLAMHGRGSDS 310

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSLC 295
           L LF +M+    ++P+ ++ +  L  C+    +  G++     ++ + I+ ++ H     
Sbjct: 311 LTLFSQME-SSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEH----Y 365

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
             ++D+ ++ G L  AR + E      DA+ W ++++G   H
Sbjct: 366 GCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFH 407



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 20/152 (13%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           F+ T L+  YA CG+      VF  ++ K+V  + ++I G   +   +++L LFS M  S
Sbjct: 261 FLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESS 320

Query: 116 NVSPDDFTL------ATISKLSGEIKDLNVGML-IHGLSIKI---GFVVDVILANSLMSM 165
            V PDD          T + L  + ++L   M+  +G+  KI   G +VD++  N L+  
Sbjct: 321 GVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLL-- 378

Query: 166 YVKCGKFSECLNLFDEMPQR-NVGSWNVRISG 196
                  SE  ++ ++MP + +   W   ++G
Sbjct: 379 -------SEARDMVEKMPMKPDALIWGALMAG 403


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/482 (34%), Positives = 271/482 (56%), Gaps = 14/482 (2%)

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
            P + T+L     L G+  Q+ LV +    +   L+N+LI     +   + AL L++++ 
Sbjct: 143 GPVLKTRL---QELIGE-DQAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLL 198

Query: 114 YSNVSPDDFTLATISK---LSGEIKDLN-VGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
            +   P   TL ++ K   LS  +     + + +H  ++K+G    ++++N+L+ ++   
Sbjct: 199 RAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVHAGI 258

Query: 170 -GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
            G+ S+ L L       +  ++N  I+ +A +G    V  +R +FD+M  RN  +W+AM+
Sbjct: 259 LGRLSDALVLLRTAASVDASTFNTLITAYARAGR---VTDARALFDEMPARNAVSWSAMV 315

Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288
           NGYVQ GD  EAL LF  MQ  D + P+   LV VL  C+ L  L  GK +HG+     +
Sbjct: 316 NGYVQAGDGREALGLFARMQ-ADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNI 374

Query: 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
              V L  AL+DMY+KCG +  A  VF+     K+ + W++++ G  +HG+G EA+ L++
Sbjct: 375 RITVFLGTALVDMYAKCGEMQLAMEVFKVMK-EKNVLAWTTMIKGLAMHGRGSEALELFS 433

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
           +M  LG KPD I  +G L AC  +GL+++G E+++S++  Y IKP  E   C+VD+L R 
Sbjct: 434 QMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARN 493

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468
           G L+ A + ++ MP++P   IWGAL++    H N E+ +   K  I+LEP+    YV L 
Sbjct: 494 GLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLG 553

Query: 469 NLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
           N+YA+S R  +  E+R +M+++G+ K+PGCS + I G  H F V D +HP    I    D
Sbjct: 554 NIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWD 613

Query: 529 DL 530
           ++
Sbjct: 614 EI 615


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 167/525 (31%), Positives = 271/525 (51%), Gaps = 37/525 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T    + F+   A  ++L+  ++ H+ + S     + F+   LI  Y  C     ++ VF
Sbjct: 50  TPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVF 109

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + ++ KD+  + SLI GY +N    EA+ L   M      P+ FT A++ K +G   D  
Sbjct: 110 DQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSG 169

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
            G  IH L++K G+  DV + ++L+ MY +CGK                           
Sbjct: 170 TGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMD------------------------- 204

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                     +  VFD++  +N  +W A+I+G+ + GD + AL+ F EM L++  E    
Sbjct: 205 ---------MATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEM-LRNGFEATHF 254

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +  SV  + + L  L  GK +H   I+        + N L+DMY+K GS+  AR+VF D 
Sbjct: 255 TYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVF-DR 313

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
             NKD +TW+S+++ +  +G G EAV  + +M   G   + IT + +L+AC   GL+ EG
Sbjct: 314 VDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEG 373

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
            + Y  ++  Y ++P  +    VV +LGRAG L+ AL FI  MP+EP+ ++WGAL++A  
Sbjct: 374 -KRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACR 432

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498
           MH N+++   A   + +L+P++    V L N+YAS+ +WDA A +R MMK  G+KK P C
Sbjct: 433 MHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPAC 492

Query: 499 SWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
           SW+ +    H F   D  HP +  IY+M  ++   +R     P +
Sbjct: 493 SWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDM 537


>gi|449441630|ref|XP_004138585.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Cucumis sativus]
          Length = 600

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 188/557 (33%), Positives = 282/557 (50%), Gaps = 71/557 (12%)

Query: 3   LSSARNTFALVTSRNYTSA---------------TVQHFLQVSATHRSLKLTKQSHSQIL 47
           L SARN F  +  RN  S                T     +       ++  +Q HS ++
Sbjct: 76  LDSARNLFDEMARRNVLSMAGMEMLMGLVDPDGITFNGLFRSCVVLNDVESGRQLHSFVM 135

Query: 48  SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
            +G   + FV + ++  YA CG    ++L F+ I ++D+ L+N ++   V N    EA+E
Sbjct: 136 KIGFDLDCFVGSAVVDFYAKCGLYEDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIE 195

Query: 108 LFSNMYYSNVSPDDFTLATI-----SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
           +F  M       DDFT +++      K SGE+     G  +H L IK  F +D+++A+SL
Sbjct: 196 VFRLMQLEGFKGDDFTFSSLLSSCKYKGSGEL-----GKQLHCLLIKQSFDLDILVASSL 250

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           +++Y K        NL+D                            +R+VFD+M  RN  
Sbjct: 251 VNVYTKND------NLYD----------------------------ARKVFDEMPTRNSV 276

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +WT MI GY Q+    EA+ LF  M  KD   P++++  SVL +C    G S   Q+H  
Sbjct: 277 SWTTMIVGYGQHEYGKEAVKLFRRMFRKDYC-PDELTFASVLSSCGFTSGASELMQVHSC 335

Query: 283 AIRKELNHDVSLCNALIDMYSKCG----SLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
            I+      +S+ N LI  YSKCG    +L C R + E      D +TW+SI+ G  L G
Sbjct: 336 LIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLIAE-----PDLVTWTSIICGLALCG 390

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              +AV L++KM+  G +PD I  +GVLSAC   G ++ GL  +N + N Y++ P +E  
Sbjct: 391 LEKDAVKLFDKMLSYGIRPDKIAFLGVLSACSHGGFVSMGLHYFNLMTNQYQLVPDSEHL 450

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
            C++D+LGRAG LD+A D +K+MP E  P    A + A   HGN  +   A +     EP
Sbjct: 451 TCLIDLLGRAGSLDQAFDLLKSMPKEAGPDALRAFIRACRTHGNLRLAKRAME--FASEP 508

Query: 459 ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
           + P NY  +SN+YAS  RW  VA +R ++ DR  +K+PG SW+ I G  H F   D++HP
Sbjct: 509 DEPVNYSLVSNMYASEGRWSDVARMRKLINDRCEQKTPGLSWVEIAGYNHLFISGDRSHP 568

Query: 519 CSVSIYEMLDDLILIMR 535
            S+ +Y ML  L+  M+
Sbjct: 569 QSLDLYAMLGLLLNTMK 585



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 162/355 (45%), Gaps = 55/355 (15%)

Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN---- 191
           DL+V  L   L +K+G V ++ + N L+ +YVKC       NLFDEM +RNV S      
Sbjct: 42  DLDVDPLC--LVVKLGLVNELSVQNKLLRVYVKCRDLDSARNLFDEMARRNVLSMAGMEM 99

Query: 192 ----VRISGHASSGDF----------------SLVVR----------------------- 208
               V   G   +G F                S V++                       
Sbjct: 100 LMGLVDPDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLY 159

Query: 209 --SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
             +R  F  +  R++  W  M+   V N    EA+ +F  MQL+   + +  +  S+L +
Sbjct: 160 EDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEG-FKGDDFTFSSLLSS 218

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C        GKQ+H   I++  + D+ + ++L+++Y+K  +L  AR+VF++    +++++
Sbjct: 219 CKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYTKNDNLYDARKVFDEMP-TRNSVS 277

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++ GYG H  G EAV L+ +M      PD +T   VLS+CG +   +E +++++ +I
Sbjct: 278 WTTMIVGYGQHEYGKEAVKLFRRMFRKDYCPDELTFASVLSSCGFTSGASELMQVHSCLI 337

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
                +    I   ++    + G +  AL   + +  EP    W +++    + G
Sbjct: 338 KL-GFEAFLSINNGLIYAYSKCGIIAAALQCFRLI-AEPDLVTWTSIICGLALCG 390


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 171/488 (35%), Positives = 257/488 (52%), Gaps = 39/488 (7%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           +V   L   YA C     +++ F  I+  D+  +NS++N Y      +EAL LFS M  S
Sbjct: 290 YVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDS 349

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
            + PD  T+  +         L  G LIH   +K+G   DV + NSL+SMY +C   S  
Sbjct: 350 GLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSA 409

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
           ++                                  VF ++K ++V  W +++    Q+ 
Sbjct: 410 MD----------------------------------VFHEIKDQDVVTWNSILTACAQHN 435

Query: 236 DLDEALVLFLEMQLKDRIEP--NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
             +E L LF    L ++ EP  +++SL +VL   + L      KQ+H +A +  L  D  
Sbjct: 436 HPEEVLKLF---SLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRM 492

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L N LID Y+KCGSLD A R+FE    N+D  +WSS++ GY   G   EA  L+++M  L
Sbjct: 493 LSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSL 552

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G +P+ +T +GVL+AC R G +NEG   Y+ +   Y I PT E C+C+VD+L RAG+L  
Sbjct: 553 GIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTE 612

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A +FI  MP EP   +W  L++AS MH + EM   A + ++ ++P + + YV L N+YA+
Sbjct: 613 AANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAA 672

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
           S  W+  A L+  M+  G+KKSPG SW+ + G+   F V D++HP S  IY ML+ + + 
Sbjct: 673 SGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAMLELIGME 732

Query: 534 MRGAAASP 541
           M  A   P
Sbjct: 733 MIKAGYVP 740



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 216/453 (47%), Gaps = 56/453 (12%)

Query: 34  RSLKLTKQSHSQILSLGHIS-------NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           RSL   ++ H  +++    S       N  +   LIT Y  C  P  ++ VF+ +  ++ 
Sbjct: 58  RSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNP 117

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             + S+I  +V+N    +AL LFS+M  S  + D F L +  +   E+ D+  G  +H  
Sbjct: 118 VSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAH 177

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           ++K     D+I+ N+L++MY K G                                  LV
Sbjct: 178 ALKSERGSDLIVQNALVTMYSKNG----------------------------------LV 203

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                +F+++K +++ +W ++I G+ Q G   EAL +F EM ++    PN+    S    
Sbjct: 204 DDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRA 263

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C ++     G+QIHG +I+  L+ D+ +  +L DMY++C +LD AR  F       D ++
Sbjct: 264 CGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIE-APDLVS 322

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC-GRSGLINEGLEIYNSV 385
           W+SIV+ Y + G   EA++L+++M   G +PD IT+ G+L AC GR  L       +  +
Sbjct: 323 WNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDAL------YHGRL 376

Query: 386 INTYRIK----PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           I++Y +K        +C  ++ M  R   L  A+D    +  +     W ++++A   H 
Sbjct: 377 IHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIK-DQDVVTWNSILTACAQHN 435

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           + E     +  L + EP    + +SL+N+ ++S
Sbjct: 436 HPEEVLKLFSLLNKSEPS--LDRISLNNVLSAS 466



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 139/322 (43%), Gaps = 45/322 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV+  L       +L   +  HS ++ LG   +  V   L++ YA C   + +  VF+ I
Sbjct: 357 TVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEI 416

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + +DV  +NS++    +++   E L+LFS +  S  S D  +L  +   S E+    +  
Sbjct: 417 KDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVK 476

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASS 200
            +H  + K G V D +L+N+L+  Y KCG   + + LF+ M   R+V SW          
Sbjct: 477 QVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSW---------- 526

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                   +++I GY Q G   EA  LF  M+    I PN V+ 
Sbjct: 527 ------------------------SSLIVGYAQFGYAKEAFDLFSRMRSLG-IRPNHVTF 561

Query: 261 VSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           + VL  CS +  ++ G   +      + I     H    C+ ++D+ ++ G L  A    
Sbjct: 562 IGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREH----CSCIVDLLARAGKLTEAANFI 617

Query: 316 EDSSFNKDAITWSSIVSGYGLH 337
           +   F  D I W ++++   +H
Sbjct: 618 DQMPFEPDIIMWKTLLAASKMH 639



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 3/221 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           ++ + L  SA     ++ KQ H+     G + +  +S  LI  YA CG    +  +F  +
Sbjct: 458 SLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIM 517

Query: 82  -QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
             ++DV+ ++SLI GY +     EA +LFS M    + P+  T   +      +  +N G
Sbjct: 518 GNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEG 577

Query: 141 MLIHG-LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHA 198
              +  +  + G V      + ++ +  + GK +E  N  D+MP + ++  W   ++   
Sbjct: 578 CYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASK 637

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
              D  +  R+      +   +  A+  + N Y  +G+ +E
Sbjct: 638 MHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNE 678



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 101/212 (47%), Gaps = 12/212 (5%)

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRK-------ELNHDVSLCNALIDMYSKCGSLDCARR 313
            +++  CS L  L  G+++H   +         +L  +  L N LI MY +C + D AR+
Sbjct: 48  AALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQ 107

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VF D    ++ ++W+S+++ +  +G+  +A+ L++ M+  G+  D   +   + AC   G
Sbjct: 108 VF-DEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            +  G +++   + + R      +   +V M  + G +D      + +  +   S WG++
Sbjct: 167 DVGTGRQVHAHALKSERGSDLI-VQNALVTMYSKNGLVDDGFMLFERIKDKDLIS-WGSI 224

Query: 434 VSASVMHGNSEMQDL-AYKSLIQLEPENPSNY 464
           ++     G  EM+ L  ++ +I     +P+ +
Sbjct: 225 IAGFAQQG-FEMEALQVFREMIVEGSHHPNEF 255


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 175/549 (31%), Positives = 280/549 (51%), Gaps = 81/549 (14%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM-------- 112
           ++  YA  G+ T +   F SI   D + YN+L++    +    +A  LF  M        
Sbjct: 72  MLGGYAANGRLTLALSFFRSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSY 131

Query: 113 -----------------YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
                            +Y +++P+   ++    L+  I++  +         +  +  D
Sbjct: 132 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEW--D 189

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
            I  N+LM+ YV+C +  E   +F+ MPQR+V SWN  +SGHA  GD +    +RR+FD 
Sbjct: 190 AISWNALMAGYVQCSQIEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMA---EARRLFDV 246

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV--------------SLV 261
              R+V+ WTA+++GY QNG L+EA  +F  M  K+ +  N +               L 
Sbjct: 247 APIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELF 306

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID--------------------- 300
             +P C ++   S    + G+A    L+   ++ + +                       
Sbjct: 307 DAMP-CRNVA--SWNTMLTGYAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEE 363

Query: 301 ------------MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348
                       MY KCG+++ A   FE+    +D ++W+++++GY  HG G EA+ +++
Sbjct: 364 TLQLFKEMGRCAMYFKCGNMEEAHSAFEEME-ERDIVSWNTMIAGYARHGFGKEALEVFD 422

Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
            M    +KPD IT+VGVL+AC  SGL+ +G+  + S+   + +    E   C++D+LGRA
Sbjct: 423 TMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRA 482

Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468
           G+LD A++ +K MP EP  ++WGAL+ AS +H NSE+   A + + +LEPEN   YV LS
Sbjct: 483 GRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLS 542

Query: 469 NLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
           N+YASS +W  V ++R MM +RG+KK PG SWI +  K H FSV D  HP    IY  L+
Sbjct: 543 NIYASSGKWRDVDKMRLMMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYGFLE 602

Query: 529 DLILIMRGA 537
           DL + M+ A
Sbjct: 603 DLDIRMKKA 611



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 132/321 (41%), Gaps = 76/321 (23%)

Query: 45  QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104
           ++  +  I + F  T +++ YA  G   +++ VF+++  K+   +N+++  YV+     E
Sbjct: 242 RLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEE 301

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI---------------- 148
           A ELF  M   NV+  +  L   ++          GML    +I                
Sbjct: 302 AKELFDAMPCRNVASWNTMLTGYAQ---------AGMLDEARAIFDMMPQKDAVSWAAML 352

Query: 149 ----KIGFVVDVILANSLM---SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
               + GF  + +     M   +MY KCG   E  + F+EM +R++ SWN  I+G     
Sbjct: 353 AAYSQGGFSEETLQLFKEMGRCAMYFKCGNMEEAHSAFEEMEERDIVSWNTMIAG----- 407

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                        Y ++G   EAL +F  M+ K   +P+ ++LV
Sbjct: 408 -----------------------------YARHGFGKEALEVFDTMR-KTSTKPDDITLV 437

Query: 262 SVLPTC--SSLI--GLSGGKQIH-GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            VL  C  S L+  G+S    +H  F +  +  H       +ID+  + G LD A  + +
Sbjct: 438 GVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEH----YTCMIDLLGRAGRLDEAVNLMK 493

Query: 317 DSSFNKDAITWSSIVSGYGLH 337
           D  F  D+  W +++    +H
Sbjct: 494 DMPFEPDSTMWGALLGASRIH 514



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 133/334 (39%), Gaps = 47/334 (14%)

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
           P   V   N  I+ H  +G    V  + R+F  M RR+   + AM+ GY  NG L  AL 
Sbjct: 31  PDAEVIRRNKAITAHMRAG---RVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALS 87

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG--------GKQIHGFAIRKELNH---- 290
            F  +   D    N  +L+  L   SSL                 +   I    NH    
Sbjct: 88  FFRSIPRPDSFSYN--TLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVS 145

Query: 291 ------------DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
                       D    N ++  Y + G +  AR +F DS    DAI+W+++++GY    
Sbjct: 146 LARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLF-DSRTEWDAISWNALMAGYVQCS 204

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI- 397
           +  EA  ++N+M     + D+++   ++S   R G + E   +++       + P  ++ 
Sbjct: 205 QIEEAQKMFNRM----PQRDVVSWNTMVSGHARRGDMAEARRLFD-------VAPIRDVF 253

Query: 398 -CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
               VV    + G L+ A      MP E +   W A+++A V      M + A +    +
Sbjct: 254 TWTAVVSGYAQNGMLEEAKRVFDAMP-EKNAVSWNAMMAAYV---QRRMMEEAKELFDAM 309

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490
              N +++ ++   YA +   D    +  MM  +
Sbjct: 310 PCRNVASWNTMLTGYAQAGMLDEARAIFDMMPQK 343


>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
          Length = 532

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/504 (33%), Positives = 271/504 (53%), Gaps = 8/504 (1%)

Query: 34  RSLKLTKQSHSQILSLG-HISNPFVSTKL-ITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
           RS+   KQ  +  ++ G    +PF S  L  +A +  G    S  +F  I    +  +NS
Sbjct: 16  RSMSEFKQIQAFFITSGLSQHHPFASRLLSFSAISSWGDIDHSYRIFLQIPSPTISNWNS 75

Query: 92  LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           +I G+ K    N ++ +F  M    V PD  T   ++K    + +L + + +H    K G
Sbjct: 76  IIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELRLALAVHCRIAKEG 135

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
              D  +ANSL+ MY  CG       +FDEM  RN  SWN  + G+A  GD      + +
Sbjct: 136 LWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLD---SAHQ 192

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VF  M  R+V +W++MI+G V+ G+   AL +F  M++    + N V++VSVL  C+ L 
Sbjct: 193 VFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGP-KANXVTMVSVLCACAHLG 251

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK-DAITWSSI 330
            L  G+ +H + +   +   + L  +L+DMY+KCG+++ A  VF     ++ D + W++I
Sbjct: 252 ALEXGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTI 311

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           + G   HG   E++ L+ +M  LG  PD IT + + SAC   GL++E    + S +    
Sbjct: 312 IGGLATHGLVXESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKS-LGKQG 370

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           + P +E  AC+VD+L RAGQL  A DFI  MP+EP+ S+ GAL++  + H   ++ +   
Sbjct: 371 MVPKSEHYACMVDVLSRAGQLAEAYDFIAQMPMEPTASMLGALLNGCMNHRRFDLAERVG 430

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
           + LI+LEP++   Y+ LSN+YA  + WD    +R  M+ RG+KKSPG S++ + G  H F
Sbjct: 431 RKLIELEPDHDGRYIGLSNVYAGVKLWDNARMMREAMERRGVKKSPGFSFVEVLGTLHRF 490

Query: 511 SVADKAHPCSVSIYEMLDDLILIM 534
              DK H     IY ML+ ++  M
Sbjct: 491 IAHDKTHNDLEKIYMMLNTIVRQM 514


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/511 (34%), Positives = 272/511 (53%), Gaps = 24/511 (4%)

Query: 34  RSLKLTKQSHSQILSLG-----HISNPFVS--TKLITAYALCGQPTQSQLVFNSIQHKDV 86
           +S+   +Q HSQI+ LG     H+  P ++   +  T+ AL    T +  +F+SI   D 
Sbjct: 33  QSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDAL----TYALKLFDSIPQPDA 88

Query: 87  YLYNSLINGYVKNH--GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           +LYN++I G++ +     N  L L+S+M  ++V P++FT  ++     +I+    GM IH
Sbjct: 89  FLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQH---GMQIH 145

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
               K GF    +  NSL+ MYV      E   +F  +P  +  SW   ISG++  G   
Sbjct: 146 AHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWG--- 202

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           L+  +  +F  M ++N  +W AM+  YVQ     EA  LF  M+ ++    +K    ++L
Sbjct: 203 LIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTML 262

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             C+ L  L  GK IH +  R  +  D  L  A++DMY KCG L+ A +VF         
Sbjct: 263 SACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRW 322

Query: 325 IT-WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
           I+ W+ ++ G  +HG G  A+ L+ +M      PD IT + +L+AC  SGL+ EG   ++
Sbjct: 323 ISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFS 382

Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
            +I  Y I+P  E   C+VD+LGRAG +  A   I  MPV P  ++ G L+ A   H N 
Sbjct: 383 YMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNI 442

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
           E+ +   + +I+LEP N   YV L+NLYA++ +W+  A++R +M DRG+KK+PG S I +
Sbjct: 443 ELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIEL 502

Query: 504 HGKTHCFSVADKAHPCS----VSIYEMLDDL 530
            G  H F   ++ HP +      +YEML+ L
Sbjct: 503 QGTVHEFIAGERNHPQAKELHAKVYEMLEHL 533


>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
 gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
          Length = 502

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/493 (31%), Positives = 280/493 (56%), Gaps = 39/493 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T+  +   ++  A   +L    Q H+Q L  G + N  + T  +  Y+ CG   +++ VF
Sbjct: 5   TAGRLSVLIRRCAASGALSPGAQVHAQGLVGGLLPNTTLDTDFVLLYSRCGALHRARQVF 64

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +    ++ YN L+           A+EL S +  S + PD +++  + +   E++D+ 
Sbjct: 65  DGMSFPSMHAYNVLLAASPPG----TAVELISRLLASGLRPDRYSIPAVLRACAELRDML 120

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G + HGL++++G + +V+++ +L+ MY K G  ++   +FDEMP+R+   WN  ++G+A
Sbjct: 121 LGAVFHGLALRLGLLANVVVSGALLDMYAKTGMLADATRVFDEMPERDAVVWNCMVTGYA 180

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
            +G      RS    +  ++  + +                     ++M    R  PN  
Sbjct: 181 RAG------RSEETLELFRKAQIES---------------------VDMARDLRAVPN-- 211

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
               VL  C++   L  G++IHG  +R    + D+++ NAL+DMY+KCG +D A+ VF  
Sbjct: 212 ----VLNVCANEGQLMKGREIHGRMVRCFAFDSDIAVGNALVDMYAKCGQVDGAQAVFAS 267

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
               ++ ++WS+++S YG+HG G EA+ +Y +MV  G KP+ IT + +LS+C  SGL+++
Sbjct: 268 MKV-RNVMSWSTLISCYGVHGMGKEALRIYEEMVSRGVKPNCITFISILSSCSHSGLVSD 326

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
           G  I+ S+   + ++PT +  AC+VD+LGRAG ++ A+  I+ MP+EP  S+WGAL+SA 
Sbjct: 327 GRRIFESMSKVHAVEPTADHYACMVDLLGRAGAIEEAVGIIRKMPMEPGASLWGALLSAC 386

Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
             H N ++ ++A   L +LE  N SNYV+L  +Y +  R D+V+ +R+ M++ G+ K+PG
Sbjct: 387 ATHNNVDVGEVAAYKLFELEEGNASNYVTLCGIYDAIGRSDSVSGIRSRMRELGMVKTPG 446

Query: 498 CSWISIHGKTHCF 510
           CSW+ + G+ H F
Sbjct: 447 CSWVHVKGRAHAF 459



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 11/192 (5%)

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           P    L  ++  C++   LS G Q+H   +   L  + +L    + +YS+CG+L  AR+V
Sbjct: 4   PTAGRLSVLIRRCAASGALSPGAQVHAQGLVGGLLPNTTLDTDFVLLYSRCGALHRARQV 63

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG--RS 372
           F+  SF   ++   +++      G    AV L ++++  G +PD  +I  VL AC   R 
Sbjct: 64  FDGMSF--PSMHAYNVLLAASPPGT---AVELISRLLASGLRPDRYSIPAVLRACAELRD 118

Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
            L+     +++ +     +     +   ++DM  + G L  A      MP E    +W  
Sbjct: 119 MLLG---AVFHGLALRLGLLANVVVSGALLDMYAKTGMLADATRVFDEMP-ERDAVVWNC 174

Query: 433 LVSASVMHGNSE 444
           +V+     G SE
Sbjct: 175 MVTGYARAGRSE 186


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 256/465 (55%), Gaps = 14/465 (3%)

Query: 61  LITAYALCGQPTQSQLVFNSIQH----KDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
           +I  Y   G   +++ +F+ ++     KD   +NS+I+GYV     +EA  LF ++    
Sbjct: 205 MIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEG 264

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           + PD FTL ++     ++  +  G   H L+I  G   + I+  +L+ MY KC       
Sbjct: 265 IEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQ 324

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWTAMINGYV 232
             FD + +R++ +WN  ISG+A       +   R +  +M+R     NVY W  +I GYV
Sbjct: 325 MAFDGVSERDLPTWNALISGYARCNQAEKI---RELHQKMRRDGFEPNVYTWNGIIAGYV 381

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           +N   D A+ LF EMQ+ + + P+  ++  +L  CS L  +  GKQ+H ++IR   + DV
Sbjct: 382 ENKQYDSAMQLFTEMQIAN-LRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDV 440

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
            +  AL+DMY+KCG +    RV+   S N + ++ +++++ Y +HG G E + L+ +M+ 
Sbjct: 441 HIGAALVDMYAKCGDVKHCYRVYNMIS-NPNLVSHNAMLTAYAMHGHGEEGIALFRRMLA 499

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
              +PD +T + VLS+C  +G +  G E   +++  Y + P+ +   C+VD+L RAGQL 
Sbjct: 500 SKVRPDHVTFLAVLSSCVHAGSLEIGHECL-ALMVAYNVMPSLKHYTCMVDLLSRAGQLY 558

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A + IK +P E     W AL+    +H   ++ ++A + LI+LEP NP NYV L+NLYA
Sbjct: 559 EAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGEIAAEKLIELEPNNPGNYVMLANLYA 618

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
           S+ +W  + + R +MKD G++K PGCSWI      H F   D  H
Sbjct: 619 SAGKWHYLTQTRQLMKDMGMQKRPGCSWIEDRDGIHVFVAKDIYH 663



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 206/448 (45%), Gaps = 66/448 (14%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L KQ H+  +  G  ++ FV+TKL+  YA       +  VF+++  ++++ + +L+  Y+
Sbjct: 66  LGKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVYI 125

Query: 98  KNHGHNEALELFSNMYYSNVSP--DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           +     EA  LF  + Y  V    D F    + K+   +  + +G  +HG+++K      
Sbjct: 126 EMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALK------ 179

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
                         G       +F    +++  S+N  I+G+  +G+   + +++ +FD+
Sbjct: 180 ------------HDGDMKSAFEMFSRFSRKSAASYNAMIAGYWENGN---LFKAKELFDR 224

Query: 216 MKRRNVY----AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           M++  V     +W +MI+GYV     DEA  LF ++ LK+ IEP+  +L SVL  C+ + 
Sbjct: 225 MEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDL-LKEGIEPDSFTLGSVLAGCADMA 283

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            +  GK+ H  AI + L  +  +  AL++MYSKC  +  A+  F+  S  +D  TW++++
Sbjct: 284 SIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVS-ERDLPTWNALI 342

Query: 332 SGYG----------LHGK----GHE---------------------AVLLYNKMVCLGSK 356
           SGY           LH K    G E                     A+ L+ +M     +
Sbjct: 343 SGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLR 402

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PDI T+  +L+AC R   I  G +++   I          I A +VDM  + G +     
Sbjct: 403 PDIYTVGIILAACSRLATIQRGKQVHAYSIRAGH-DSDVHIGAALVDMYAKCGDVKHCYR 461

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSE 444
            +  M   P+     A+++A  MHG+ E
Sbjct: 462 -VYNMISNPNLVSHNAMLTAYAMHGHGE 488



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 146/355 (41%), Gaps = 70/355 (19%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   L   A   S++  K++HS  +  G  SN  V   L+  Y+ C     +Q+ F+
Sbjct: 269 SFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFD 328

Query: 80  SIQHKDVYLYNSLIN-----------------------------------GYVKNHGHNE 104
            +  +D+  +N+LI+                                   GYV+N  ++ 
Sbjct: 329 GVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDS 388

Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
           A++LF+ M  +N+ PD +T+  I      +  +  G  +H  SI+ G   DV +  +L+ 
Sbjct: 389 AMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVD 448

Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
           MY KCG    C  +++ +   N+ S N                                 
Sbjct: 449 MYAKCGDVKHCYRVYNMISNPNLVSHN--------------------------------- 475

Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
            AM+  Y  +G  +E + LF  M L  ++ P+ V+ ++VL +C     L  G +     +
Sbjct: 476 -AMLTAYAMHGHGEEGIALFRRM-LASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMV 533

Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
              +   +     ++D+ S+ G L  A  + ++     DA+TW++++ G  +H +
Sbjct: 534 AYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNE 588



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 155/374 (41%), Gaps = 56/374 (14%)

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  +H  SIK GF     +   L+ MY +   F    +                     
Sbjct: 66  LGKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACH--------------------- 104

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNK 257
                        VFD M  RN+++WTA++  Y++ G  +EA  LF ++  +  R+  + 
Sbjct: 105 -------------VFDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDF 151

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL-------------CNALIDMYSK 304
                VL  C  L  +  G+Q+HG A++ + +   +               NA+I  Y +
Sbjct: 152 FVFPVVLKICCGLCAVELGRQMHGMALKHDGDMKSAFEMFSRFSRKSAASYNAMIAGYWE 211

Query: 305 CGSLDCARRVF---EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
            G+L  A+ +F   E     KD I+W+S++SGY       EA  L+  ++  G +PD  T
Sbjct: 212 NGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSFT 271

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
           +  VL+ C     I  G E ++  I    ++  + +   +V+M  +   +  A      +
Sbjct: 272 LGSVLAGCADMASIRRGKEAHSLAI-VRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGV 330

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPENPSNYVSLSNLYASSRRWDA 479
                P+ W AL+S       +E     ++ + +   EP N   +  +   Y  ++++D+
Sbjct: 331 SERDLPT-WNALISGYARCNQAEKIRELHQKMRRDGFEP-NVYTWNGIIAGYVENKQYDS 388

Query: 480 VAELRTMMKDRGLK 493
             +L T M+   L+
Sbjct: 389 AMQLFTEMQIANLR 402



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 106/270 (39%), Gaps = 23/270 (8%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +++  KQ H+  +  GH S+  +   L+  YA CG       V+N I + ++  +N+++ 
Sbjct: 420 TIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNAMLT 479

Query: 95  GYVKNHGH-NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
            Y   HGH  E + LF  M  S V PD  T   +         L +G     L +    +
Sbjct: 480 AYAM-HGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMVAYNVM 538

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGDFSLVVRSRRV 212
             +     ++ +  + G+  E   L   +P + +  +WN  + G     +  L   +   
Sbjct: 539 PSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGEIAAEK 598

Query: 213 FDQMKRRNVYAWTAMINGYVQNGD---LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
             +++  N   +  + N Y   G    L +   L  +M ++ R            P CS 
Sbjct: 599 LIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLMKDMGMQKR------------PGCSW 646

Query: 270 LIGLSG-----GKQIHGFAIRKELNHDVSL 294
           +    G      K I+  +  KE + D+S+
Sbjct: 647 IEDRDGIHVFVAKDIYHTSTSKEDSFDLSV 676


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 181/592 (30%), Positives = 284/592 (47%), Gaps = 83/592 (14%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNP-FVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           FL+ +   RS  L +  H+ IL       P F+   L+  Y+    P  +QLV +    +
Sbjct: 13  FLESAVLSRSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPR 72

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
            V  + SLI+G V N     AL  FSNM    V P+DFT   + K S  +     G  +H
Sbjct: 73  TVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLH 132

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD-- 202
            L++K G ++DV +  S   MY K G   E  N+FDEMP RN+ +WN  +S     G   
Sbjct: 133 ALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCL 192

Query: 203 ----------------------------------------FSLVVRSRRVFDQMKRRNVY 222
                                                      +VRSR       R +V 
Sbjct: 193 DAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSR------YREDVS 246

Query: 223 AWTAMINGYVQNGDL-------------------------------DEALVLFLEMQLKD 251
            +  +I+ Y + GD+                               +E     + +Q + 
Sbjct: 247 VFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARK 306

Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
            +EP    + SVL  C+ L GL  G+ +H  A++  +  ++ + +AL+D+Y KCGS++ A
Sbjct: 307 EVEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYA 366

Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV--CLGSKPDIITIVGVLSAC 369
            +VF +    ++ +TW++++ GY   G    A+ L+ +M     G     +T+V VLSAC
Sbjct: 367 EQVFREMP-ERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSAC 425

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
            R+G +  GL+I+ S+   Y I+P  E  ACVVD+LGR+G +DRA +FIK MP+ P+ S+
Sbjct: 426 SRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISV 485

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489
           WGAL+ A  MHG +++  +A + L +L+P++  N+V  SN+ AS+ RW+    +R  M+D
Sbjct: 486 WGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRD 545

Query: 490 RGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
            G+KK+ G SW+++  + H F   D  H  +  I  ML  L   M+ A   P
Sbjct: 546 IGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVP 597



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 133/322 (41%), Gaps = 39/322 (12%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T   FL   A   SL+L +Q H  I+   +  +  V   LI  Y  CG    S+LVF+ I
Sbjct: 212 TFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRI 271

Query: 82  --QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
               ++V  + SL+   V+NH    A  +F       V P DF ++++     E+  L +
Sbjct: 272 GSGRRNVVSWCSLLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLSACAELGGLEL 330

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +H L++K     ++ + ++L+ +Y KCG       +F EMP+RN+ +WN  I G   
Sbjct: 331 GRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGG--- 387

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKV 258
                                          Y   GD+D AL LF EM      I  + V
Sbjct: 388 -------------------------------YAHLGDVDMALSLFQEMTSGSCGIALSYV 416

Query: 259 SLVSVLPTCSSLIGLSGGKQI-HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
           +LVSVL  CS    +  G QI      R  +         ++D+  + G +D A    + 
Sbjct: 417 TLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKR 476

Query: 318 SSFNKDAITWSSIVSGYGLHGK 339
                    W +++    +HGK
Sbjct: 477 MPILPTISVWGALLGACKMHGK 498



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 41/94 (43%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T   +   L   A    L+L +  H+  L      N FV + L+  Y  CG    ++ VF
Sbjct: 311 TDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVF 370

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM 112
             +  +++  +N++I GY      + AL LF  M
Sbjct: 371 REMPERNLVTWNAMIGGYAHLGDVDMALSLFQEM 404


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/488 (35%), Positives = 257/488 (52%), Gaps = 39/488 (7%)

Query: 56  FVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115
           +V   L   YA C     +++ F  I+  D+  +NS++N Y      +EAL LFS M  S
Sbjct: 273 YVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDS 332

Query: 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
            + PD  T+  +         L  G LIH   +K+G   DV + NSL+SMY +C   S  
Sbjct: 333 GLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSA 392

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235
           ++                                  VF ++K ++V  W +++    Q+ 
Sbjct: 393 MD----------------------------------VFHEIKDQDVVTWNSILTACAQHN 418

Query: 236 DLDEALVLFLEMQLKDRIEP--NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
             +E L LF    L ++ EP  +++SL +VL   + L      KQ+H +A +  L  D  
Sbjct: 419 HPEEVLKLF---SLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRM 475

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           L N LID Y+KCGSLD A R+FE    N+D  +WSS++ GY   G   EA  L+++M  L
Sbjct: 476 LSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSL 535

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
           G +P+ +T +GVL+AC R G +NEG   Y+ +   Y I PT E C+C+VD+L RAG+L  
Sbjct: 536 GIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTE 595

Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
           A +FI  MP EP   +W  L++AS MH + EM   A + ++ ++P + + YV L N+YA+
Sbjct: 596 AANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAA 655

Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
           S  W+  A L+  M+  G+KKSPG SW+ + G+   F V D++HP S  IY ML+ + + 
Sbjct: 656 SGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAMLELIGME 715

Query: 534 MRGAAASP 541
           M  A   P
Sbjct: 716 MIKAGYVP 723



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 190/391 (48%), Gaps = 49/391 (12%)

Query: 89  YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148
           + S+I  +V+N    +AL LFS+M  S  + D F L +  +   E+ D+  G  +H  ++
Sbjct: 103 WASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHAL 162

Query: 149 KIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208
           K     D+I+ N+L++MY K G                                  LV  
Sbjct: 163 KSERGSDLIVQNALVTMYSKNG----------------------------------LVDD 188

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
              +F+++K +++ +W ++I G+ Q G   EAL +F EM ++    PN+    S    C 
Sbjct: 189 GFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACG 248

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
           ++     G+QIHG +I+  L+ D+ +  +L DMY++C +LD AR  F       D ++W+
Sbjct: 249 AVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIE-APDLVSWN 307

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC-GRSGLINEGLEIYNSVIN 387
           SIV+ Y + G   EA++L+++M   G +PD IT+ G+L AC GR  L       +  +I+
Sbjct: 308 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDAL------YHGRLIH 361

Query: 388 TYRIK----PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
           +Y +K        +C  ++ M  R   L  A+D    +  +     W ++++A   H + 
Sbjct: 362 SYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIK-DQDVVTWNSILTACAQHNHP 420

Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
           E     +  L + EP    + +SL+N+ ++S
Sbjct: 421 EEVLKLFSLLNKSEPS--LDRISLNNVLSAS 449



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 177/403 (43%), Gaps = 38/403 (9%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H+  L     S+  V   L+T Y+  G      ++F  I+ KD+  + S+I G+ + 
Sbjct: 155 RQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQ 214

Query: 100 HGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
               EAL++F  M       P++F   +  +  G +     G  IHGLSIK     D+ +
Sbjct: 215 GFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYV 274

Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
             SL  MY +C               +N+ S                   +R  F +++ 
Sbjct: 275 GCSLSDMYARC---------------KNLDS-------------------ARVAFYRIEA 300

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
            ++ +W +++N Y   G L EALVLF EM+    + P+ +++  +L  C     L  G+ 
Sbjct: 301 PDLVSWNSIVNAYSVEGLLSEALVLFSEMR-DSGLRPDGITVRGLLCACVGRDALYHGRL 359

Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           IH + ++  L+ DVS+CN+L+ MY++C  L  A  VF +   ++D +TW+SI++    H 
Sbjct: 360 IHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIK-DQDVVTWNSILTACAQHN 418

Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
              E + L++ +       D I++  VLSA    G      +++        +     + 
Sbjct: 419 HPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRM-LS 477

Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
             ++D   + G LD A+   + M        W +L+      G
Sbjct: 478 NTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFG 520



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 139/322 (43%), Gaps = 45/322 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           TV+  L       +L   +  HS ++ LG   +  V   L++ YA C   + +  VF+ I
Sbjct: 340 TVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEI 399

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           + +DV  +NS++    +++   E L+LFS +  S  S D  +L  +   S E+    +  
Sbjct: 400 KDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVK 459

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASS 200
            +H  + K G V D +L+N+L+  Y KCG   + + LF+ M   R+V SW          
Sbjct: 460 QVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSW---------- 509

Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                   +++I GY Q G   EA  LF  M+    I PN V+ 
Sbjct: 510 ------------------------SSLIVGYAQFGYAKEAFDLFSRMR-SLGIRPNHVTF 544

Query: 261 VSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
           + VL  CS +  ++ G   +      + I     H    C+ ++D+ ++ G L  A    
Sbjct: 545 IGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREH----CSCIVDLLARAGKLTEAANFI 600

Query: 316 EDSSFNKDAITWSSIVSGYGLH 337
           +   F  D I W ++++   +H
Sbjct: 601 DQMPFEPDIIMWKTLLAASKMH 622



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 15/242 (6%)

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
           M  RN  +W ++I  +VQNG   +AL LF  M L+     ++ +L S +  C+ L  +  
Sbjct: 95  MYGRNPVSWASVIAAHVQNGRAGDALGLFSSM-LRSGTAADQFALGSAVRACTELGDVGT 153

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
           G+Q+H  A++ E   D+ + NAL+ MYSK G +D    +FE    +KD I+W SI++G+ 
Sbjct: 154 GRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIK-DKDLISWGSIIAGFA 212

Query: 336 LHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             G   EA+ ++ +M+  GS  P+         ACG  G    G +I+   I  YR+   
Sbjct: 213 QQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIK-YRLDRD 271

Query: 395 TEICACVVDMLGRAGQLDRA-LDFIKTMPVEPSPSIWGALVSASVMHG--------NSEM 445
             +   + DM  R   LD A + F +     P    W ++V+A  + G         SEM
Sbjct: 272 LYVGCSLSDMYARCKNLDSARVAFYRIEA--PDLVSWNSIVNAYSVEGLLSEALVLFSEM 329

Query: 446 QD 447
           +D
Sbjct: 330 RD 331



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 3/221 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           ++ + L  SA     ++ KQ H+     G + +  +S  LI  YA CG    +  +F  +
Sbjct: 441 SLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIM 500

Query: 82  -QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
             ++DV+ ++SLI GY +     EA +LFS M    + P+  T   +      +  +N G
Sbjct: 501 GNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEG 560

Query: 141 MLIHG-LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHA 198
              +  +  + G V      + ++ +  + GK +E  N  D+MP + ++  W   ++   
Sbjct: 561 CYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASK 620

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
              D  +  R+      +   +  A+  + N Y  +G+ +E
Sbjct: 621 MHNDMEMGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNE 661


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/489 (33%), Positives = 270/489 (55%), Gaps = 13/489 (2%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP-----TQSQLVFNSIQHKDVYLYN 90
           +K  KQ  +Q++    I+ P ++TK +T   LC  P       +Q VFN I   + +++N
Sbjct: 1   MKQLKQIQAQMIKTAIITEPKLATKFLT---LCTSPHVGDLLYAQRVFNGITSPNTFMWN 57

Query: 91  SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150
           ++I  Y  +     A   +  M  S+V  + +T   + +    +  +   + +HGL IK+
Sbjct: 58  AIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKL 117

Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
           GF  DV   N+L+ +Y  CG+      LFD +P+R+  SWN+ I G+  SGD   V  + 
Sbjct: 118 GFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGD---VKTAY 174

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
            VF  M  +NV +WT++I+G V+ G   EAL L  EMQ     E + V++ S+L  C++L
Sbjct: 175 GVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQ-NAGFELDGVAIASLLTACANL 233

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN-KDAITWSS 329
             L  G+ +H + +   ++ D  +  AL++MY KCG ++ A  VF     N KD   W++
Sbjct: 234 GALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTA 293

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
           ++ G+ +HG+G EA+  +N+M   G +P+ IT   VL AC   GL+ EG E++ S+   Y
Sbjct: 294 MIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFY 353

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            + P+ E   C+VD+LGR+G+LD A + IK MP++PS  IWGAL+ A  +H +  +    
Sbjct: 354 NVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQV 413

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
              L++++ ++   Y+ L+ + A+  +W   AE+R  MK  G+  SPG S ++++G  H 
Sbjct: 414 GAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHE 473

Query: 510 FSVADKAHP 518
           F    + HP
Sbjct: 474 FLAGHQDHP 482



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 144/360 (40%), Gaps = 69/360 (19%)

Query: 12  LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
           L +S  + S T    L+      ++    Q H  ++ LG  S+ F    L+  YALCG+ 
Sbjct: 80  LSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEI 139

Query: 72  TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV-------------- 117
             ++ +F++I  +D   +N +I+GY+K+     A  +F +M   NV              
Sbjct: 140 HCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAG 199

Query: 118 -----------------SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
                              D   +A++      +  L+ G  +H   +  G  VD ++  
Sbjct: 200 QSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGC 259

Query: 161 SLMSMYVKCGKFSECLNLFDEMP--QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
           +L++MYVKCG   E L++F ++   Q++V  W   I G A  G                 
Sbjct: 260 ALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHG----------------- 302

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
           R V                 EAL  F  M+ ++ I PN ++  +VL  CS    +  GK+
Sbjct: 303 RGV-----------------EALEWFNRMR-REGIRPNSITFTAVLRACSYGGLVEEGKE 344

Query: 279 I-HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           +         +N  +     ++D+  + G LD A+ + +       A+ W +++    +H
Sbjct: 345 LFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIH 404


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/499 (32%), Positives = 277/499 (55%), Gaps = 40/499 (8%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALC---GQPTQSQLVFNSIQHKDVYLYNSL 92
           L L KQ HS+++ LG   +  V   L+  YA C   G    S+ VF  +   +V  + ++
Sbjct: 72  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 131

Query: 93  INGYVKN-HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I  Y ++     EA+ELF  M   ++ P+ F+ +++ K  G + D   G  ++  ++K+G
Sbjct: 132 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 191

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
                 + NSL+SMY + G+  +                                  +R+
Sbjct: 192 IASVNCVGNSLISMYARSGRMED----------------------------------ARK 217

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
            FD +  +N+ ++ A+++GY +N   +EA +LF E+     I  +  +  S+L   +S+ 
Sbjct: 218 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA-DTGIGISAFTFASLLSGAASIG 276

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            +  G+QIHG  ++     +  +CNALI MYS+CG+++ A +VF +   +++ I+W+S++
Sbjct: 277 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMI 335

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           +G+  HG    A+ +++KM+  G+KP+ IT V VLSAC   G+I+EG + +NS+   + I
Sbjct: 336 TGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 395

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
            P  E  AC+VD+LGR+G L  A++FI +MP+     +W  L+ A  +HGN+E+   A +
Sbjct: 396 VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAE 455

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            +++ EP++P+ Y+ LSNL+AS+ +W  V ++R  MK+R L K  GCSWI +  + H F 
Sbjct: 456 MILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFH 515

Query: 512 VADKAHPCSVSIYEMLDDL 530
           V + +HP +  IY+ LD L
Sbjct: 516 VGETSHPQAWQIYQELDQL 534



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 117/212 (55%), Gaps = 15/212 (7%)

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           +VFD+M  RN+  WT MI  + Q G   +A+ LFL+M+L   + P++ +  SVL  C+ L
Sbjct: 11  KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFTYSSVLSACTEL 69

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC---GSLDCARRVFEDSSFNKDAITW 327
             L+ GKQ+H   IR  L  DV +  +L+DMY+KC   GS+D +R+VFE      + ++W
Sbjct: 70  GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSW 128

Query: 328 SSIVSGYGLHGK-GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           ++I++ Y   G+   EA+ L+ KM+    +P+  +   VL ACG       G ++Y    
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY---- 184

Query: 387 NTYRIKPTTEICACV----VDMLGRAGQLDRA 414
            +Y +K       CV    + M  R+G+++ A
Sbjct: 185 -SYAVKLGIASVNCVGNSLISMYARSGRMEDA 215



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           ++ T    L  +A+  ++   +Q H ++L  G+ SN  +   LI+ Y+ CG    +  VF
Sbjct: 261 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 320

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDL 137
           N ++ ++V  + S+I G+ K+     ALE+F  M  +   P++ T +A +S  S      
Sbjct: 321 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS------ 374

Query: 138 NVGMLIHG 145
           +VGM+  G
Sbjct: 375 HVGMISEG 382


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/485 (32%), Positives = 260/485 (53%), Gaps = 35/485 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H   +  G   + F    L   YA CG  + +++VF  I   D+  +N++I G+   
Sbjct: 286 RQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYG 345

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
               EA+  FS M +  + PD+ T+ ++        +L  GM +HG   K+G  +DV + 
Sbjct: 346 GDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVC 405

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           N+L++MY KC +  + +  F+EM          R +                        
Sbjct: 406 NTLLTMYAKCSELRDAIFFFEEM----------RCNA----------------------- 432

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           ++ +W A++   +++   +E   L L++    +  P+ ++L +VL   +  + +  G Q+
Sbjct: 433 DLVSWNAILTACMRHDQAEEVFRL-LKLMCISQHRPDYITLTNVLGASAETVSIEIGNQV 491

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H +A++  LN D S+ N LID+Y+KCGSL  A ++F DS  N D ++WSS++ GY   G 
Sbjct: 492 HCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIF-DSMINPDVVSWSSLILGYAQFGY 550

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           G EA+ L+  M  L  KP+ +T VGVL+AC   GL+ EG ++Y ++   + I PT E C+
Sbjct: 551 GEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCS 610

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VD+L RAG L+ A  FI  M  +P   +W  L++A   HGN ++   A +++++++P 
Sbjct: 611 CMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPS 670

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           N + +V L N+YAS   W+ VA LR++MK RG++K PG SWI +  + H F V D  HP 
Sbjct: 671 NSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSLHPE 730

Query: 520 SVSIY 524
              IY
Sbjct: 731 RNKIY 735



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 214/456 (46%), Gaps = 38/456 (8%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T +T  + +   +  RSL+  K+ H  +L      +  +   ++  Y  C     +Q VF
Sbjct: 62  TLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVF 121

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           +++  ++V  + S+I GY +N     ALE +  M  S V PD FT  +I K    + D+ 
Sbjct: 122 DAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIG 181

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  +H   +K  F   +I  N+L+SMY K                              
Sbjct: 182 LGRQLHAHVLKSEFGAHIIAQNALISMYTKS----------------------------- 212

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                +L++ +  VF +M  R++ +W +MI G+ Q G   EAL  F EM  +    PN+ 
Sbjct: 213 -----NLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEF 267

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
              SV   CSSL+    G+Q+HG +I+  L  DV    +L DMY+KCG L CAR VF   
Sbjct: 268 IFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQI 327

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
               D + W++I++G+   G   EA+  +++M   G  PD IT+  +L AC     + +G
Sbjct: 328 G-RPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQG 386

Query: 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           ++++   IN   +     +C  ++ M  +  +L  A+ F + M        W A+++A +
Sbjct: 387 MQVHG-YINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACM 445

Query: 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
            H  +E +      L+ +    P +Y++L+N+  +S
Sbjct: 446 RHDQAE-EVFRLLKLMCISQHRP-DYITLTNVLGAS 479



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 203/460 (44%), Gaps = 44/460 (9%)

Query: 38  LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
           L +Q H+ +L     ++      LI+ Y        +  VF+ +  +D+  + S+I G+ 
Sbjct: 182 LGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFS 241

Query: 98  KNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
           +     EAL  F  M +  V  P++F   ++      +     G  +HG+SIK G   DV
Sbjct: 242 QLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDV 301

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
               SL  MY KCG                                  L+  +R VF Q+
Sbjct: 302 FAGCSLCDMYAKCG----------------------------------LLSCARVVFYQI 327

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
            R ++ AW A+I G+   GD  EA+  F +M+ +  I P+++++ S+L  C+S   L  G
Sbjct: 328 GRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLI-PDEITVRSLLCACTSPSELYQG 386

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
            Q+HG+  +  L+ DV +CN L+ MY+KC  L  A   FE+   N D ++W++I++    
Sbjct: 387 MQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMR 446

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           H +  E   L   M     +PD IT+  VL A   +  I  G +++   + T  +   T 
Sbjct: 447 HDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKT-GLNCDTS 505

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
           +   ++D+  + G L  A     +M + P    W +L+      G  E     +K++ +L
Sbjct: 506 VTNGLIDLYAKCGSLKTAHKIFDSM-INPDVVSWSSLILGYAQFGYGEEALKLFKTMRRL 564

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAE----LRTMMKDRGL 492
           + +   N+V+   +  +      V E      TM K+ G+
Sbjct: 565 DVK--PNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGI 602



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 13/284 (4%)

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
            +EA+  F  +Q K        +   ++  CS L  L  GK+IH   ++ + + D++L N
Sbjct: 43  FNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQN 102

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
            +++MY KC SL  A++VF D+   ++ ++W+S+++GY  +G+G  A+  Y +M+  G  
Sbjct: 103 HILNMYGKCKSLKDAQKVF-DAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVM 161

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRA 414
           PD  T   ++ AC   G I  G +++  V+ +   +    I A   ++ M  ++  +  A
Sbjct: 162 PDQFTFGSIIKACSSLGDIGLGRQLHAHVLKS---EFGAHIIAQNALISMYTKSNLIIDA 218

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY-KSLIQLEPENPSNYVSLSNLYAS 473
           LD    M      S WG++++     G  E++ L Y K ++      P+ ++  S   A 
Sbjct: 219 LDVFSRMATRDLIS-WGSMIAGFSQLG-YELEALCYFKEMLHQGVYLPNEFIFGSVFSAC 276

Query: 474 SR--RWDAVAELRTMMKDRGLKKS--PGCSWISIHGKTHCFSVA 513
           S   + +   +L  M    GL +    GCS   ++ K    S A
Sbjct: 277 SSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCA 320



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 2/220 (0%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+ + L  SA   S+++  Q H   L  G   +  V+  LI  YA CG    +  +F+S+
Sbjct: 471 TLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSM 530

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            + DV  ++SLI GY +     EAL+LF  M   +V P+  T   +      +  +  G 
Sbjct: 531 INPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGW 590

Query: 142 LIHG-LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHAS 199
            ++G +  + G        + ++ +  + G  +E      +M    ++  W   ++   +
Sbjct: 591 KLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKT 650

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
            G+  +  R+     ++   N  A   + N Y   G+ ++
Sbjct: 651 HGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWED 690


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/509 (34%), Positives = 276/509 (54%), Gaps = 31/509 (6%)

Query: 61  LITAYALCGQ---PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV 117
           L+TA    G+   P   +L   ++  +DV  +NS+I G + +   + A   F+     NV
Sbjct: 52  LLTALWRAGRHHLPAARRLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNV 111

Query: 118 SPDDFTLATI---------SKLSGEIKDLNV--------GMLIHGLSIKIGFVVDVILAN 160
           +  +  LA +          +L GE+   NV        G+   G   +   V D +   
Sbjct: 112 ATWNAMLAGLLRLGRADDADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDR 171

Query: 161 SLMSM------YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
           +L+S       YV+ G F E   LF+ MP++NV +    I+ +   GD   V  +RR+FD
Sbjct: 172 NLVSWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSYCKQGD---VESARRLFD 228

Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
            ++ ++V +W  MI GYV NG  +EA+ L   M  ++ ++P+  +L++VL  CS+L  L 
Sbjct: 229 GIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVM-FREGVKPDHATLIAVLTACSALALLR 287

Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
            GK  H  AI+  L   +S  NAL+ MYSKCG++  +  VF +    KD ++W++I++ Y
Sbjct: 288 QGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLR-TKDIVSWNTIIAAY 346

Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
             HGK  + + L+++M   G  PD IT + VLSACG  G ++  L++++ + + Y I P 
Sbjct: 347 AQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPR 406

Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
            E  AC+VD+L RAGQL++A  +IK MP+E   ++WG+L+ A  MHGN ++ +LA K L+
Sbjct: 407 AEHYACIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQMHGNVQLGELAAKMLV 466

Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
           Q + E+   YV LSN+YA++  W  V ++R  MK+RG+KK PG SW  I  + H F   D
Sbjct: 467 QSDSESSGPYVILSNIYAAAGMWGQVNQVRGQMKERGVKKQPGYSWTEIANEVHMFVGGD 526

Query: 515 KAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            +HP    I   L  +   MR      H+
Sbjct: 527 ASHPEMRKIISELRKISFHMRMVTNEAHI 555



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 158/385 (41%), Gaps = 58/385 (15%)

Query: 3   LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTK 60
           ++ AR  F  +  RN  S  A +  +++      + KL +    +        N    T 
Sbjct: 158 VARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPEK--------NVVACTA 209

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +IT+Y   G    ++ +F+ I+ KDV  +N++I GYV N    EA+ L + M+   V PD
Sbjct: 210 MITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPD 269

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
             TL  +      +  L  G   H ++IK      +  +N+LM+MY KCG   E   +F 
Sbjct: 270 HATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFI 329

Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
            +  +++ SWN                                   +I  Y Q+G   + 
Sbjct: 330 NLRTKDIVSWNT----------------------------------IIAAYAQHGKYQKV 355

Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLC 295
           + LF EM++   I P+ ++ +SVL  C  +  +    ++       +AI     H     
Sbjct: 356 IALFHEMEMTGLI-PDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYA--- 411

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK---GHEAVLLYNKMVC 352
             ++D+ S+ G L+ A    +D     +   W S++    +HG    G  A  +  +   
Sbjct: 412 -CIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQMHGNVQLGELAAKMLVQSDS 470

Query: 353 LGSKPDIITIVGVLSACGRSGLINE 377
             S P +I +  + +A G  G +N+
Sbjct: 471 ESSGPYVI-LSNIYAAAGMWGQVNQ 494



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 115/273 (42%), Gaps = 56/273 (20%)

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ-MKR 218
           N  +S   + G  +    +FD MP R+V SWN  ++    +G   L   +RR+FD+ M  
Sbjct: 19  NQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPA-ARRLFDEAMPS 77

Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL-----PTCSSLIG- 272
           R+V +W ++I G + +GDLD A   F     ++    N + L  +L          L G 
Sbjct: 78  RDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAM-LAGLLRLGRADDADRLFGE 136

Query: 273 ------LSGGKQIHGFAIRKELNHDVSLCNALIDM-----------YSKCGSLDCARRVF 315
                 +S    + G A R E+     + +A+ D            Y + G    A ++F
Sbjct: 137 MPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLF 196

Query: 316 E------------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
           E                              D    KD I+W+++++GY  +G G EA+ 
Sbjct: 197 EAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMR 256

Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378
           L+  M   G KPD  T++ VL+AC    L+ +G
Sbjct: 257 LHAVMFREGVKPDHATLIAVLTACSALALLRQG 289


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/502 (34%), Positives = 276/502 (54%), Gaps = 11/502 (2%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  AT + L    Q H          N  V+   I  Y  C    ++  VF+ +  KD 
Sbjct: 390 LRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDA 449

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N++I  + +N   ++ L +  +M  S + PD++T  ++ K       LN GM IH  
Sbjct: 450 VSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEIHTT 508

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            +K+G   +  + +SL+ MY KCG   E   + +++    +G  N   S H  + +    
Sbjct: 509 IVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFI-GIGDSNT-YSEHPETIEEPKG 566

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
           ++ RRV     +  + +W A+I+GYV     ++A   F  M ++  I P+K +  +VL T
Sbjct: 567 IQDRRV-----QEMIVSWNAIISGYVMRKQSEDAQRFFNRM-MEMGITPDKFTYSTVLDT 620

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           C++L  +  GKQIH   I+KEL +DV +C+ L+DMYSKCG+L  +R +FE +   +D +T
Sbjct: 621 CANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPI-RDFVT 679

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W++++ GY  HG G EA+ L+  MV +   P+  T V +L AC   GL+  GL+ ++ + 
Sbjct: 680 WNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMK 739

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA-SVMHGNSEM 445
             Y + P  E  + +VD+LG++G++++AL+ I+ MP E    IW  L+SA  +   N E 
Sbjct: 740 KEYGLDPRLEHYSNMVDILGKSGEVEKALELIQEMPFEADDVIWRTLLSACKINRNNVEA 799

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHG 505
            ++A  +L++L+P++ S Y+ LSN+YA +  WD  +ELRT M+   LKK PGCSW+ I  
Sbjct: 800 AEVAANALLRLDPQDSSTYILLSNIYADAGMWDKASELRTAMRSDKLKKEPGCSWVEIRD 859

Query: 506 KTHCFSVADKAHPCSVSIYEML 527
           + H F V DKAHP    IY  L
Sbjct: 860 EFHTFLVGDKAHPRWKEIYNGL 881



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 134/535 (25%), Positives = 241/535 (45%), Gaps = 81/535 (15%)

Query: 21  ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCG----------- 69
           A      +  A  R+ +L KQ+H+ ++  G     FVS  L+  Y  CG           
Sbjct: 50  ANFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDG 109

Query: 70  --------------------QPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELF 109
                                  ++ L F  +  +DV  +NS+++G+++   + E++++F
Sbjct: 110 MPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVF 169

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
             M  S V  D+ + + I K+   +++  +G  IHG+++++G+  DV+  ++L+ MY KC
Sbjct: 170 IEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKC 229

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMIN 229
            +  E   +F  MPQ+N   W                                +W+A+I 
Sbjct: 230 KRLDESFTVFYAMPQKN---W-------------------------------ISWSAIIA 255

Query: 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289
           G VQN  LD  L +F EMQ K  +  ++    SVL +C++L  L  G Q+H  A++ +  
Sbjct: 256 GCVQNNFLDGGLKMFKEMQ-KVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFV 314

Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNK 349
            D  +  A +DMY+KC ++  A+R+F D S N +  +++++++GY     G  A+LL+ K
Sbjct: 315 KDGIVRTATLDMYAKCNNMQDAQRLF-DMSENLNLQSYNAMITGYSQKDNGFRALLLFRK 373

Query: 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGR 407
           +       D I++ G L AC     ++EGL+++     +     +  IC     +DM G+
Sbjct: 374 LSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLATKS---NFSRNICVANAFIDMYGK 430

Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL--EPENPSNYV 465
              LD A      M  + + S W A+++A   H  +E +      L+ +      P  Y 
Sbjct: 431 CEALDEACRVFDEMGRKDAVS-WNAIIAA---HEQNEERSKTLNILVSMLRSGMEPDEYT 486

Query: 466 SLSNLYA-SSRRWDAVAELRTMMKDRGLKKSP--GCSWISIHGKTHCFSVADKAH 517
             S L A +    +   E+ T +   G+  +P  G S + ++ K      A+K H
Sbjct: 487 FGSVLKACAGDSLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIH 541


>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 178/538 (33%), Positives = 284/538 (52%), Gaps = 42/538 (7%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T  TV   L  SA    ++  KQSH+  +  G   +  + T L+  Y   G    +++VF
Sbjct: 273 TRVTVSTCLSASANMGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVF 332

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  KDV  +N +I+GYV+      A+ +   M    +  D  TLAT+   +   ++L 
Sbjct: 333 DRMIDKDVVTWNLIISGYVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNLK 392

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  +    I+  F  D++LA+++M MY KCG   +   +FD   ++++  WN  ++ +A
Sbjct: 393 LGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYA 452

Query: 199 SSG----------------------DFSLVVRS----------RRVFDQMKRRNVY---- 222
            SG                       ++L++ S          + +F QM+   ++    
Sbjct: 453 ESGLSGEGLRLFYGMQLEGVPPNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPNLI 512

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
           +WT M+NG VQNG  +EA++   +MQ +  + PN VS+   L  C++L  L  G+ IHG+
Sbjct: 513 SWTTMMNGMVQNGCSEEAILFLRKMQ-ESGLRPNAVSITVALSACANLASLHFGRSIHGY 571

Query: 283 AIRKELNHD--VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
            IR  L H   VS+  +L+DMY+KCG ++ A +VF  S    +   +++++S Y L+G  
Sbjct: 572 IIRN-LQHSSSVSIETSLVDMYAKCGDINKAEKVF-GSKLYSELPLYNAMISAYALYGNL 629

Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
            EA+ LY  +  +G KPD ITI  VLSAC  +G  N+  EI   +++ + + P  E    
Sbjct: 630 KEAIALYRSLEGVGLKPDNITITNVLSACNHAGDNNQATEIVTEMVSKHGMNPCLEHYGL 689

Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
           +VD+L  AGQ D+AL  I+ MP +P   +  +LV++      SE+ D   + LI+ EP+N
Sbjct: 690 MVDLLASAGQTDKALRLIEEMPYKPDARMIQSLVASCNKQPKSELVDYLSRQLIESEPDN 749

Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK-THCFSVADKAH 517
             NYV++SN YA    WD V ++R +MK +GLKK PGCSWI I G+  H F   DK H
Sbjct: 750 SGNYVTISNAYAVEGSWDEVVKMREIMKAKGLKKKPGCSWIQIKGEGVHVFVANDKTH 807



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 134/489 (27%), Positives = 226/489 (46%), Gaps = 49/489 (10%)

Query: 7   RNTFALVTSRNYTSATVQ-----HFLQVSATHRSLKLTKQSHSQILSLG--HISNPFVST 59
           +   +LVT  ++ +  +        LQ     R L   KQ H++IL  G  +  N ++ T
Sbjct: 52  KEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDFYAKNEYIET 111

Query: 60  KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
           KL+  YA C     ++++F  ++ ++V+ + ++I    +      AL  F  M  + + P
Sbjct: 112 KLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFP 171

Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
           D+F +  + K  G ++    G  +HG  +K G    V +A+SL  MY KCG   +   +F
Sbjct: 172 DNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVF 231

Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           DE+P+RNV +WN                                  A++ GYVQNG  +E
Sbjct: 232 DEIPERNVVAWN----------------------------------ALMVGYVQNGMNEE 257

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
           A+ LF +M+ K+ +EP +V++ + L   +++ G+  GKQ H  AI   L  D  L  +L+
Sbjct: 258 AIRLFSDMR-KEGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGLELDNILGTSLL 316

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
           + Y K G ++ A  VF D   +KD +TW+ I+SGY   G    A+ +   M     K D 
Sbjct: 317 NFYCKVGLIEYAEMVF-DRMIDKDVVTWNLIISGYVQQGLVENAIYMCQLMRLEKLKYDC 375

Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
           +T+  ++SA  R+  +  G E+    I  +  +    + + V+DM  + G +  A     
Sbjct: 376 VTLATLMSAAARTQNLKLGKEVQCYCIR-HSFESDIVLASTVMDMYAKCGSIVDAKKVFD 434

Query: 420 TMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
           +   E    +W  L++A    G S E   L Y   +QLE   P N ++ + +  S  R  
Sbjct: 435 S-TAEKDLILWNTLLAAYAESGLSGEGLRLFYG--MQLEGV-PPNVITWNLIILSLLRNG 490

Query: 479 AVAELRTMM 487
            V E + M 
Sbjct: 491 EVDEAKDMF 499



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 97/227 (42%), Gaps = 22/227 (9%)

Query: 228 INGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
           ++   +NG++ EAL L  EM  ++ RI P       +L  C     L  GKQIH   ++ 
Sbjct: 42  VSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYG--EILQGCVYERDLCTGKQIHARILK- 98

Query: 287 ELNHDVSLCNALID-----MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
             N D    N  I+      Y+KC +LD A  +F      ++  +W++I+      G   
Sbjct: 99  --NGDFYAKNEYIETKLVIFYAKCDALDIAEVLFTKLRV-RNVFSWAAIIGVKCRIGLCE 155

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
            A++ + +M+     PD   +  V  ACG       G  ++      Y +K   E C  V
Sbjct: 156 GALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHG-----YVVKAGLEDCVFV 210

Query: 402 ----VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
                DM G+ G LD A      +P E +   W AL+   V +G +E
Sbjct: 211 ASSLADMYGKCGVLDDARKVFDEIP-ERNVVAWNALMVGYVQNGMNE 256


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/468 (34%), Positives = 256/468 (54%), Gaps = 38/468 (8%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T LIT YA  G    +Q +F+ I  KDV  +N++I+GY +   + EALELF  M   NV 
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           PD+ T  T+         + +G  +H      GF  ++ + N+L+ +Y KCG+      L
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
           F                                    +  ++V +W  +I GY       
Sbjct: 254 FQ----------------------------------GLSYKDVISWNTLIGGYTHMNLYK 279

Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLCN 296
           EAL+LF EM L+    PN V+++SVLP C+ L  +  G+ IH +  +  K + +  SL  
Sbjct: 280 EALLLFQEM-LRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT 338

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           +LIDMY+KCG ++ A +VF +S  +K   +W++++ G+ +HG+   +  L+++M  +G +
Sbjct: 339 SLIDMYAKCGDIEAAHQVF-NSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIE 397

Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
           PD IT VG+LSAC  SG+++ G  I+ S+   Y++ P  E   C++D+LG +G    A +
Sbjct: 398 PDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEE 457

Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
            I TM +EP   IW +L+ A  MHGN E+ +   ++LI++EPENPS+Y+ LSN+YAS+ R
Sbjct: 458 MINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGR 517

Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
           W+ VA +R ++  + +KK PGCS I +      F V DK HP +  IY
Sbjct: 518 WEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIY 565



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 214/389 (55%), Gaps = 13/389 (3%)

Query: 77  VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
           VF +IQ  +  ++N++I G+  +     +L L+  M    + P+ +T   + K   + K 
Sbjct: 20  VFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKT 79

Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
              G  IHG  +K+GF +D+ +  SL+SMYV+  +  +   +FD    R+V S+   I+G
Sbjct: 80  FTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITG 139

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
           +AS GD   +  ++++FD++  ++V +W AMI+GY + G   EAL LF EM +K  + P+
Sbjct: 140 YASRGD---IRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEM-MKMNVRPD 195

Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
           + + V+VL  C+    +  G+Q+H +      + ++ + NALID+YSKCG ++ A  +F+
Sbjct: 196 ESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
             S+ KD I+W++++ GY       EA+LL+ +M+  G  P+ +T++ VL AC   G I+
Sbjct: 256 GLSY-KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAID 314

Query: 377 EGLEIYNSVINTYRIKPTTE---ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            G  I+  V    R+K  T    +   ++DM  + G ++ A     +M +  S S W A+
Sbjct: 315 IGRWIH--VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAM 371

Query: 434 VSASVMHGNSEMQDLAYKSL--IQLEPEN 460
           +    MHG ++     +  +  I +EP++
Sbjct: 372 IFGFAMHGRADASFDLFSRMRKIGIEPDD 400



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 131/319 (41%), Gaps = 46/319 (14%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A   S++L +Q HS +   G  SN  +   LI  Y+ CG+   +  +F  + +KDV
Sbjct: 203 LSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDV 262

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N+LI GY   + + EAL LF  M  S  +P+D T+ ++      +  +++G  IH  
Sbjct: 263 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVY 322

Query: 147 SIK--IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
             K   G      L  SL+ MY KCG       +F+ M  +++ SWN  I G A  G   
Sbjct: 323 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHG--- 379

Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
              R+   FD                            LF  M+ K  IEP+ ++ V +L
Sbjct: 380 ---RADASFD----------------------------LFSRMR-KIGIEPDDITFVGLL 407

Query: 265 PTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
             CS    L  G+ I       + +  +L H       +ID+    G    A  +     
Sbjct: 408 SACSHSGMLDLGRHIFRSMTQDYKMTPKLEH----YGCMIDLLGHSGLFKEAEEMINTME 463

Query: 320 FNKDAITWSSIVSGYGLHG 338
              D + W S++    +HG
Sbjct: 464 MEPDGVIWCSLLKACKMHG 482


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 185/549 (33%), Positives = 273/549 (49%), Gaps = 48/549 (8%)

Query: 6   ARNTFALVTSRNYTSATVQH---------FLQVSATHRSLKLTKQSHSQILSLGHISNPF 56
            R   AL   R   +  V H         F   S    SL+  +Q H   +      N +
Sbjct: 228 GREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSY 287

Query: 57  VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
               L   YA C +   ++ VF  I+  D+  +NSLIN +      +EA+ LFS M  S 
Sbjct: 288 AGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSG 347

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           + PD  T+  +         L+ G  IH   +K+G   DVI++NSL+SMY +C  FS  +
Sbjct: 348 LRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAM 407

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
           ++F E   R+                                  V  W +++   VQ+  
Sbjct: 408 DVFHETHDRD----------------------------------VVTWNSILTACVQHQH 433

Query: 237 LDEALVLFLEMQLKDRIEP--NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           L++   LF    L  R  P  +++SL +VL   + L      KQ+H +A +  L  D  L
Sbjct: 434 LEDVFKLF---SLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAML 490

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            N LID Y+KCGSLD A ++FE     +D  +WSS++ GY   G   EA+ L+ +M  LG
Sbjct: 491 SNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLG 550

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
            KP+ +T VGVL+AC R GL++EG   Y+ +   Y I PT E C+CV+D+L RAG+L  A
Sbjct: 551 VKPNHVTFVGVLTACSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEA 610

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
             F+  MP EP   +W  L++AS  H + +M   A + ++ ++P + + YV L N+YASS
Sbjct: 611 AKFVDQMPFEPDIIMWKTLLAASRTHNDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASS 670

Query: 475 RRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
             W+  A L+  M+  G++KSPG SWI + G+   F V D++HP S  IY ML+ + L M
Sbjct: 671 GNWNEFARLKKDMRSSGVQKSPGKSWIKLKGELKVFIVEDRSHPESDEIYTMLEVIGLEM 730

Query: 535 RGAAASPHL 543
             A   P L
Sbjct: 731 VKAGYIPEL 739



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 221/451 (49%), Gaps = 53/451 (11%)

Query: 34  RSLKLTKQSHSQILS-------LGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           RSL   +  H  +L+       L H  N  +S  LIT Y  CG P  +++VF+ +  ++ 
Sbjct: 56  RSLPQGRLVHRHLLASSARDRFLAH--NTILSNHLITMYGRCGAPDSARVVFDGMLDRNP 113

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             + ++I  + +N    +A+ LFS+M  S   PD F L +      E+ DL +G  +H  
Sbjct: 114 VSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVHAQ 173

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD-FSL 205
           +IK     D+I+ N+L++MY K G                            S GD F+L
Sbjct: 174 AIKWESGSDLIVQNALVTMYSKSG----------------------------SVGDGFAL 205

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
                  F++++ +++ +W ++I G  Q G   +AL +F EM  +    PN+    SV  
Sbjct: 206 -------FERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFR 258

Query: 266 TCSSLI-GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
            CS ++  L  G+QIHG +++ +L+ +     +L DMY++C  LD AR+VF     + D 
Sbjct: 259 ACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIE-SPDL 317

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           ++W+S+++ +   G   EA++L+++M   G +PD IT++ +L AC     +++G  I++ 
Sbjct: 318 VSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSY 377

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           ++    +     +   ++ M  R      A+D       +     W ++++A V H    
Sbjct: 378 LVKL-GLGGDVIVSNSLLSMYARCLDFSSAMDVFHETH-DRDVVTWNSILTACVQH--QH 433

Query: 445 MQDLAYKSLIQLEPENPS-NYVSLSNLYASS 474
           ++D+ +K    L    PS + +SL+N+ ++S
Sbjct: 434 LEDV-FKLFSLLHRSMPSLDRISLNNVLSAS 463



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 103/220 (46%), Gaps = 12/220 (5%)

Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIH-----GFAIRKELNHDVSLCNALIDMYSKC 305
           DR+ P   + +     CS L  L  G+ +H       A  + L H+  L N LI MY +C
Sbjct: 38  DRLSPAAYAALVA--ACSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRC 95

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
           G+ D AR VF D   +++ ++W+++++ +  + +  +A+ L++ M+  G+ PD   +   
Sbjct: 96  GAPDSARVVF-DGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSA 154

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           + AC   G +  G +++   I  +       +   +V M  ++G +       + +  + 
Sbjct: 155 ICACSELGDLGLGRQVHAQAIK-WESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKD 213

Query: 426 SPSIWGALVSASVMHGNSEMQDLA-YKSLIQLEPENPSNY 464
             S WG++++     G  EM  L  ++ +I     +P+ +
Sbjct: 214 LIS-WGSIIAGLAQQGR-EMDALQIFREMIAEGVHHPNEF 251


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/499 (32%), Positives = 277/499 (55%), Gaps = 40/499 (8%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALC---GQPTQSQLVFNSIQHKDVYLYNSL 92
           L L KQ HS+++ LG   +  V   L+  YA C   G    S+ VF  +   +V  + ++
Sbjct: 67  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 126

Query: 93  INGYVKN-HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I  Y ++     EA+ELF  M   ++ P+ F+ +++ K  G + D   G  ++  ++K+G
Sbjct: 127 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 186

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
                 + NSL+SMY + G+  +                                  +R+
Sbjct: 187 IASVNCVGNSLISMYARSGRMED----------------------------------ARK 212

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
            FD +  +N+ ++ A+++GY +N   +EA +LF E+     I  +  +  S+L   +S+ 
Sbjct: 213 AFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA-DTGIGISAFTFASLLSGAASIG 271

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            +  G+QIHG  ++     +  +CNALI MYS+CG+++ A +VF +   +++ I+W+S++
Sbjct: 272 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMI 330

Query: 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
           +G+  HG    A+ +++KM+  G+KP+ IT V VLSAC   G+I+EG + +NS+   + I
Sbjct: 331 TGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 390

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
            P  E  AC+VD+LGR+G L  A++FI +MP+     +W  L+ A  +HGN+E+   A +
Sbjct: 391 VPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAE 450

Query: 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFS 511
            +++ EP++P+ Y+ LSNL+AS+ +W  V ++R  MK+R L K  GCSWI +  + H F 
Sbjct: 451 MILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFH 510

Query: 512 VADKAHPCSVSIYEMLDDL 530
           V + +HP +  IY+ LD L
Sbjct: 511 VGETSHPQAWQIYQELDQL 529



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 117/212 (55%), Gaps = 15/212 (7%)

Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
           +VFD+M  RN+  WT MI  + Q G   +A+ LFL+M+L   + P++ +  SVL  C+ L
Sbjct: 6   KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYV-PDRFTYSSVLSACTEL 64

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC---GSLDCARRVFEDSSFNKDAITW 327
             L+ GKQ+H   IR  L  DV +  +L+DMY+KC   GS+D +R+VFE      + ++W
Sbjct: 65  GLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSW 123

Query: 328 SSIVSGYGLHGK-GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           ++I++ Y   G+   EA+ L+ KM+    +P+  +   VL ACG       G ++Y    
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY---- 179

Query: 387 NTYRIKPTTEICACV----VDMLGRAGQLDRA 414
            +Y +K       CV    + M  R+G+++ A
Sbjct: 180 -SYAVKLGIASVNCVGNSLISMYARSGRMEDA 210



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           ++ T    L  +A+  ++   +Q H ++L  G+ SN  +   LI+ Y+ CG    +  VF
Sbjct: 256 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 315

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDL 137
           N ++ ++V  + S+I G+ K+     ALE+F  M  +   P++ T +A +S  S      
Sbjct: 316 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS------ 369

Query: 138 NVGMLIHG 145
           +VGM+  G
Sbjct: 370 HVGMISEG 377


>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
          Length = 596

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/541 (31%), Positives = 285/541 (52%), Gaps = 52/541 (9%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           +L    H+ ++      +  +S +L+  YAL   P  S   F+ + HK+ + YNSL+   
Sbjct: 46  RLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAAL 105

Query: 97  VKNHG----------------------------------HNEALELFSNMY------YSN 116
            +  G                                   +EAL +F+ +          
Sbjct: 106 ARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQ 165

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           V+ D FT+ + +     ++D      +HG  +  G  V VI+AN+++  Y K G+  +  
Sbjct: 166 VAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDAR 225

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
            LFD+M  R+  SW   I+G+  +   S++  + +VFD M  ++  AWTA+I+G+ QNG+
Sbjct: 226 GLFDQMTIRDSVSWTSMIAGYCRA---SMLDDAVQVFDMMPAQDAIAWTALISGHEQNGE 282

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD---VS 293
            + AL LF E    + + P   +LVS L  C+ +  ++ GK++HGF +R+ +  D   V 
Sbjct: 283 EEIALELF-ERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVF 341

Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
           + NALIDMYSKCG +  A  VF D    +D I+W+S+V+G+  +G+G +++ ++ +M+  
Sbjct: 342 IHNALIDMYSKCGDMVAAMAVF-DRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKD 400

Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
             +P  +T + VL+AC  +GL+++G  I  S +  + ++P  E  A  +D LGR  QL+ 
Sbjct: 401 EVQPTYVTFLAVLTACSHAGLVSDGRRILES-MQDHGVEPRAEHYAAFIDALGRNHQLEE 459

Query: 414 ALDFIKTMPVE---PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           A +FIK +  +    +   WGAL+ A  +HGN E+ +   ++L QLEPEN   YV LSN+
Sbjct: 460 ASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNI 519

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
           Y+++ +WD   ++R +MK +GL+K    SWI +    H F   D +H  +  IYEMLD L
Sbjct: 520 YSAAGQWDDARQVRALMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHHEANEIYEMLDKL 579

Query: 531 I 531
            
Sbjct: 580 F 580



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/430 (21%), Positives = 190/430 (44%), Gaps = 53/430 (12%)

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
           +G+++ L  G  +H L +K       +L+N L+++Y      +  L  FD++P +N  S+
Sbjct: 41  AGDVRRL--GAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSY 98

Query: 191 NVRISGHASSGDFSLVVRSRRVFDQM--KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           N  ++  A       +  + R+ D M    RNV ++  +I+   ++G   EAL +F ++ 
Sbjct: 99  NSLLAALARG--RGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLA 156

Query: 249 LKDR------IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302
            +DR      +  ++ ++VS    C+ L      +++HG  +   +   V + NA++D Y
Sbjct: 157 -RDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAY 215

Query: 303 SKCGSLDCARRVFEDSSFN------------------------------KDAITWSSIVS 332
           SK G ++ AR +F+  +                                +DAI W++++S
Sbjct: 216 SKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALIS 275

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI-NTYRI 391
           G+  +G+   A+ L+ +M   G  P    +V  L AC + GL+  G E++  ++  +   
Sbjct: 276 GHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGS 335

Query: 392 KP-TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
            P    I   ++DM  + G +  A+     M +E     W ++V+    +G  +     +
Sbjct: 336 DPFNVFIHNALIDMYSKCGDMVAAMAVFDRM-LERDIISWNSMVTGFSHNGQGKQSLAVF 394

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM---MKDRGLKKSPG--CSWISIHG 505
           + +  L+ E    YV+   +  +      V++ R +   M+D G++       ++I   G
Sbjct: 395 ERM--LKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALG 452

Query: 506 KTHCFSVADK 515
           + H    A +
Sbjct: 453 RNHQLEEASE 462


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/524 (31%), Positives = 276/524 (52%), Gaps = 5/524 (0%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
           S T+   +   A  + L+L +Q  + I  L    N  +   L+  Y  CG   +++ +F+
Sbjct: 240 SVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFD 299

Query: 80  SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
               K++ LYN++++ YV+     E L +   M      PD  T+ +      E+ D++ 
Sbjct: 300 ECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSC 359

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G   HG  ++ G      + N++++MY+KCGK      +FD M  +   SWN  I+G   
Sbjct: 360 GKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVR 419

Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
           +GD      + ++F  M   ++ +W  MI   VQ     EA+ LF  MQ  + I  +KV+
Sbjct: 420 NGDME---SAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQ-SEGITADKVT 475

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
           +V V   C  L  L   K IHG+  +K+++ D+ L  AL+DM+++CG    A +VF +  
Sbjct: 476 MVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVF-NKM 534

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
             +D   W++ +    + G G  A+ L+++M+  G KPD +  V +L+A    GL+ +G 
Sbjct: 535 VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGW 594

Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
            I+ S+ + Y I P      C+VD+LGRAG L  AL  I +M +EP+  IWG+L++A  +
Sbjct: 595 HIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRV 654

Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           H N ++   A + + +L+PE    +V LSN+YAS+ RWD VA++R  +K++G  K PG S
Sbjct: 655 HKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSS 714

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            I I+GK   F+  D++HP    I  ML ++   +R     P L
Sbjct: 715 SIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDL 758



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 199/447 (44%), Gaps = 71/447 (15%)

Query: 29  VSATHRSLKLTK--QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           +SA  +S  LT+  Q H  I+ +G   + FV   LI  Y  CG+    + VF+ +  ++V
Sbjct: 146 LSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNV 205

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             + SLI GY K   + EA+ LF  M    + P+  T+  +     +++DL +G  +   
Sbjct: 206 VSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTC 265

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
             ++   V+ ++ N+L+ MY+KCG   +   +FDE   +N+  +N               
Sbjct: 266 IGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNT-------------- 311

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                               +++ YV+ G   E L +  EM LK    P++++++S +  
Sbjct: 312 --------------------IMSNYVRQGLAREVLAVLGEM-LKHGPRPDRITMLSAVSA 350

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
           CS L  +S GK  HG+ +R  L    ++CNA+I+MY KCG  + A RVF D   NK  ++
Sbjct: 351 CSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVF-DRMLNKTRVS 409

Query: 327 WSSIVSGYGLHGKGH-------------------------------EAVLLYNKMVCLGS 355
           W+S+++G+  +G                                  EA+ L+  M   G 
Sbjct: 410 WNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGI 469

Query: 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415
             D +T+VGV SACG  G ++    I+   I    I     +   +VDM  R G    A+
Sbjct: 470 TADKVTMVGVASACGYLGALDLAKWIHG-YIKKKDIHFDMHLGTALVDMFARCGDPQSAM 528

Query: 416 DFIKTMPVEPSPSIWGALVSASVMHGN 442
                M V+   S W A + A  M GN
Sbjct: 529 QVFNKM-VKRDVSAWTAAIGAMAMEGN 554



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 217/467 (46%), Gaps = 49/467 (10%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCG--------QPTQSQLVFNSIQHKD 85
           +++   KQ HSQI   G   +P   T LI++    G        Q      + ++     
Sbjct: 44  KTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGT 103

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
            Y+++SLI G+       +A+ +F  +      PD+FT   +     +   L  G  +HG
Sbjct: 104 HYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHG 163

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             +K+GF  D+ + NSL+  Y +CG+  +C+                             
Sbjct: 164 AIVKMGFERDMFVENSLIHFYGECGEI-DCM----------------------------- 193

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
               RRVFD+M  RNV +WT++I GY + G   EA+ LF EM ++  I PN V++V V+ 
Sbjct: 194 ----RRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEM-VEVGIRPNSVTMVGVIS 248

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
            C+ L  L  G+Q+       EL  +  + NAL+DMY KCG++D AR++F D   +K+ +
Sbjct: 249 ACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIF-DECVDKNLV 307

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
            +++I+S Y   G   E + +  +M+  G +PD IT++  +SAC     ++ G   +  V
Sbjct: 308 LYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYV 367

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           +    ++    +C  +++M  + G+ + A      M  +   S W +L++  V +G+ E 
Sbjct: 368 LRN-GLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVS-WNSLIAGFVRNGDMES 425

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
              A+K    +   +  ++ ++         +    EL  +M+  G+
Sbjct: 426 ---AWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGI 469


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 262/489 (53%), Gaps = 13/489 (2%)

Query: 59  TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
           T +IT Y        ++ VF ++       +N++I+GYV      EAL L   M +  + 
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIK------IGFVVDVILANSLMSMYVKCGKF 172
            DD T  TI      +    +G  +H   +K        F + V  +N+L+++Y K  K 
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSV--SNALITLYCKNNKV 344

Query: 173 SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232
            E   +F  MP RN+ +WN  +SG+ ++G       ++  F++M  +N+   T MI+G  
Sbjct: 345 DEARKIFYAMPVRNIITWNAILSGYVNAGRME---EAKSFFEEMPVKNLLTLTVMISGLA 401

Query: 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292
           QNG  DE L LF +M+L D  EP   +    L  CS L  L  G+Q+H   +       +
Sbjct: 402 QNGFGDEGLKLFKQMRL-DGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSL 460

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           S+ NA+I MY+KCG ++ A  VF     + D ++W+S+++  G HG G +A+ L+++M+ 
Sbjct: 461 SVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQHGHGVKAIELFDQMLK 519

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G  PD IT + VL+AC  +GL+ +G   +NS++ +Y I P  +  A +VD+  RAG   
Sbjct: 520 EGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFS 579

Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
            A   I +MP +P   +W AL++   +HGN ++   A + L +L P+N   YV LSN+YA
Sbjct: 580 YARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYA 639

Query: 473 SSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532
              RW+ VA++R +M+D+ ++K P CSWI +  K H F V D  HP  +S+Y  L+ L L
Sbjct: 640 DVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGL 699

Query: 533 IMRGAAASP 541
            M+     P
Sbjct: 700 EMKKLGYIP 708



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 206/440 (46%), Gaps = 56/440 (12%)

Query: 52  ISNP--FVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYVKNHGHNEALE 107
           I NP     T LITAY   G     + +FN   +  +D   YN++I GY  N   + ALE
Sbjct: 74  IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALE 133

Query: 108 LFSNMYYSNVSPDDFTLATI-SKLSGEIKDLNVGMLIHGLSIKIGF-VVDVILANSLMSM 165
           LF  M   +  PDDFT  ++ S L   + +      +H   +K G   V   + N+L+S+
Sbjct: 134 LFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSV 193

Query: 166 YVK--------CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
           YVK        C        LFDEMP+R+  +W   I+G+  + D +    +R VF+ M 
Sbjct: 194 YVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLN---GAREVFEAMV 250

Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
                AW AMI+GYV  G   EAL L  +M+    I+ + ++  +++  C+++     GK
Sbjct: 251 ENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLG-IQFDDITYTTIISACANVGSFQMGK 309

Query: 278 QIHGFAIRKELNHDVSLC----NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
           Q+H + ++ ELN + S C    NALI +Y K   +D AR++F      ++ ITW++I+SG
Sbjct: 310 QMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPV-RNIITWNAILSG 368

Query: 334 Y-----------------------------GL--HGKGHEAVLLYNKMVCLGSKPDIITI 362
           Y                             GL  +G G E + L+ +M   G +P     
Sbjct: 369 YVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAF 428

Query: 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422
            G L+AC   G +  G +++  +++    + +  +   ++ M  + G ++ A     TMP
Sbjct: 429 AGALTACSVLGALENGRQLHAQLVHL-GYESSLSVGNAMISMYAKCGVVEAAESVFVTMP 487

Query: 423 VEPSPSIWGALVSASVMHGN 442
                S W ++++A   HG+
Sbjct: 488 SVDLVS-WNSMIAALGQHGH 506



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 157/369 (42%), Gaps = 65/369 (17%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H   I  GF       N L+ MY K         LF+E+P  +  +    I+ + + G+
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGN 94

Query: 203 FSLVVRSRRVFD--QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
             L    R +F+   +  R+   + AMI GY  NGD   AL LF  M+ +D   P+  + 
Sbjct: 95  LEL---GREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMR-RDDFRPDDFTF 150

Query: 261 VSVLPTCSSLIGLSGGK----QIHGFAIRKELNH-DVSLCNALIDMYSK--------CGS 307
            SVL   S+L+   G +    Q+H   ++  +     S+ NAL+ +Y K        C +
Sbjct: 151 TSVL---SALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSA 207

Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGY----GLHGKG----------------------- 340
           +  AR++F++    +D +TW+++++GY     L+G                         
Sbjct: 208 MVSARKLFDEMP-KRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVH 266

Query: 341 ----HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
                EA+ L  KM  LG + D IT   ++SAC   G    G +++  ++    + P   
Sbjct: 267 CGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKN-ELNPNHS 325

Query: 397 ICACV----VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE-----MQD 447
            C  V    + +  +  ++D A      MPV  +   W A++S  V  G  E      ++
Sbjct: 326 FCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSGYVNAGRMEEAKSFFEE 384

Query: 448 LAYKSLIQL 456
           +  K+L+ L
Sbjct: 385 MPVKNLLTL 393



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 123/291 (42%), Gaps = 42/291 (14%)

Query: 52  ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
           + N      +++ Y   G+  +++  F  +  K++     +I+G  +N   +E L+LF  
Sbjct: 356 VRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQ 415

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M      P DF  A        +  L  G  +H   + +G+   + + N+++SMY KCG 
Sbjct: 416 MRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGV 475

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
                ++F  MP  ++ SWN  I   A+ G     V++  +FDQM               
Sbjct: 476 VEAAESVFVTMPSVDLVSWNSMI---AALGQHGHGVKAIELFDQM--------------- 517

Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
                            LK+ + P++++ ++VL  CS    +  G+  H F    E ++ 
Sbjct: 518 -----------------LKEGVFPDRITFLTVLTACSHAGLVEKGR--HYFNSMLE-SYG 557

Query: 292 VSLCN----ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
           ++ C      ++D++ + G    AR V +       A  W ++++G  +HG
Sbjct: 558 ITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHG 608



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 4/204 (1%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
           +L+  +Q H+Q++ LG+ S+  V   +I+ YA CG    ++ VF ++   D+  +NS+I 
Sbjct: 440 ALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIA 499

Query: 95  GYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM-LIHGLSIKIGF 152
             +  HGH  +A+ELF  M    V PD  T  T+         +  G    + +    G 
Sbjct: 500 A-LGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGI 558

Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRISGHASSGDFSLVVRSRR 211
                    ++ ++ + G FS    + D MP +     W   ++G    G+  L + +  
Sbjct: 559 TPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAE 618

Query: 212 VFDQMKRRNVYAWTAMINGYVQNG 235
              ++  +N   +  + N Y   G
Sbjct: 619 QLFKLMPQNDGTYVLLSNIYADVG 642


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/502 (33%), Positives = 276/502 (54%), Gaps = 13/502 (2%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV------FNSIQHKDVYLYNSL 92
           T  S ++ +        F+   ++   AL    T S L+      F+ +  +DV  + +L
Sbjct: 144 TSSSPTEAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTL 203

Query: 93  INGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I+GY +    +EA  +F  M  + +V P++ TL   +  +G++  L +G  +H   ++ G
Sbjct: 204 IDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESG 263

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
             + V L N+L+ M+ KCG  +    +FD MP ++V SW   +S +A  GD      + +
Sbjct: 264 GRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLE---NAAK 320

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +F ++  RNV +W+ M+  Y      DEA+ +F +M +   +EP   +LVSVL  C+ L 
Sbjct: 321 LFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDM-IAAGVEPIDATLVSVLSACAQLC 379

Query: 272 GLSGGKQIHG-FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
            L  G  ++  + +  ++    +L NA IDM++KCG +  A R+F +   +K+ ++W+++
Sbjct: 380 SLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNME-DKNVVSWNTM 438

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           +  +GLHG+  EA+ L+ +    G  PD  T +GVLSAC   GL++EG   +  +   Y 
Sbjct: 439 IMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYG 498

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           I+P  E  AC++D+LG+ G L  A +  ++MPV    + WGAL++A  MHGN E+   A 
Sbjct: 499 IEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAA 558

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
             L  L+P +   YV +S +YAS  +W  V  LRT+M+DR +KK+PGCS I + GK H F
Sbjct: 559 DKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEF 618

Query: 511 SVADKAHPCSVSIYEMLDDLIL 532
            VAD +H  S  IY  L ++ L
Sbjct: 619 LVADVSHVHSEDIYAALGNIYL 640



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 133/343 (38%), Gaps = 82/343 (23%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L L +  H  I+  G   +  +   L+  +  CG    ++ VF+ +  KDVY + S+++ 
Sbjct: 249 LGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSA 308

Query: 96  YVK-----------------------------NHGH--NEALELFSNMYYSNVSPDDFTL 124
           Y K                             +H +  +EA+ +F++M  + V P D TL
Sbjct: 309 YAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL 368

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI--LANSLMSMYVKCGKFSECLNLFDEM 182
            ++     ++  L+VG  ++   I +   V++   L+N+ + M+ KCG       LF  M
Sbjct: 369 VSVLSACAQLCSLDVGTWLYDTYI-VSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNM 427

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
             +NV SWN  I  H                                    +G  +EAL 
Sbjct: 428 EDKNVVSWNTMIMAHG----------------------------------LHGQPEEALH 453

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG-------KQIHGFAIRKELNHDVSLC 295
           LF E +  + I P++ + + VL  CS    +S G       K ++G   R E        
Sbjct: 454 LFQEFK-GNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHY------ 506

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
             +ID+  K G L  A  V        D   W ++++   +HG
Sbjct: 507 ACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHG 549


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 165/508 (32%), Positives = 270/508 (53%), Gaps = 36/508 (7%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           +Q H+  +     S+ +V   LI  YA C   T+++ VF ++   D   YN++I GY + 
Sbjct: 336 RQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRL 395

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
                A+++FS M Y ++ P   T  ++  +S     + +   IHGL +K G  +D+   
Sbjct: 396 GDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAG 455

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
           +SL+ +Y K                                  FSLV  ++ VF+ M  R
Sbjct: 456 SSLIDVYSK----------------------------------FSLVEDAKAVFNLMHNR 481

Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
           ++  W AMI G  QN   +EA+ LF ++Q+   + PN+ + V+++   S+L+ +  G+Q 
Sbjct: 482 DMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSG-LAPNEFTFVALVTVASTLVSMFHGQQF 540

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H   I+   + D  + NALIDMY+KCG +   R +FE S+  KD I W+S++S Y  HG+
Sbjct: 541 HAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFE-STLGKDVICWNSMISTYAQHGQ 599

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
             EA+ ++  M   G +P+ +T VGVLSAC  +GL++EGL  ++ +   Y I+P TE  A
Sbjct: 600 AEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYA 659

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
            VV++ GR+G+L  A +FI+ MP+EP+ ++W +L+SA  + GN E+   A +  +  +P 
Sbjct: 660 SVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIGRYATEMALLADPA 719

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           +    V +SN+YAS   W    +LR  M   G+ K PG SWI +  + H F    + HP 
Sbjct: 720 DSGPSVLMSNIYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIEVMKEVHTFIARGREHPE 779

Query: 520 SVSIYEMLDDLILIMRGAAASPHLGKMT 547
           +  IY +LD+L  I++     P   ++T
Sbjct: 780 ADVIYSLLDELTSILKNGGYLPDTSELT 807



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/517 (24%), Positives = 246/517 (47%), Gaps = 58/517 (11%)

Query: 11  ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
           +L  S        Q  L   A  R  +L   +H++ +  G + + F++  L+ AY+  G+
Sbjct: 2   SLAASVQTHGGLAQLLLSCLAGDRLHRLLPLAHARAVVTGALPDLFLANLLLRAYSKLGR 61

Query: 71  PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN--VSPDDFTLATIS 128
              ++ +F+ + HK++  + S I+ + ++    +A+ LF+    ++   +P++F LA+  
Sbjct: 62  VRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASAL 121

Query: 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG 188
           +   + + ++ G  +HG++++IG   +V +  +L+++Y K G     + +FD +P +N  
Sbjct: 122 RACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPV 181

Query: 189 SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248
           +W                                  TA+I GY Q G    AL LF +M 
Sbjct: 182 TW----------------------------------TAVITGYSQIGQGGVALELFGKMG 207

Query: 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
           L D + P++  L S +  CS+L  L GG+Q HG+A R  +  D S+ NALID+Y KC  L
Sbjct: 208 L-DGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRL 266

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368
             AR++F D   N++ ++W+++++GY  +    EA+ ++ ++   G +PD+     +L++
Sbjct: 267 SLARKLF-DCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNS 325

Query: 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
           CG    I +G +++   I    ++    +   ++DM  +   L  A    + +  +    
Sbjct: 326 CGSLAAIWQGRQVHAHAIKA-NLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDD--- 381

Query: 429 IWGALVSASVMHGNSEMQDLA-------YKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
              A+   +++ G S + DLA             L+P +P  +VSL  + +S    +   
Sbjct: 382 ---AISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKP-SPLTFVSLLGVSSSQSAIELSK 437

Query: 482 ELRTMMKDRG--LKKSPGCSWISIHGKTHCFSVADKA 516
           ++  ++   G  L    G S I ++ K   FS+ + A
Sbjct: 438 QIHGLIVKSGTSLDLYAGSSLIDVYSK---FSLVEDA 471



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 44/322 (13%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L VS++  +++L+KQ H  I+  G   + +  + LI  Y+       ++ VFN +
Sbjct: 419 TFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLM 478

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            ++D+ ++N++I G  +N    EA++LF+ +  S ++P++FT   +  ++  +  +  G 
Sbjct: 479 HNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQ 538

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
             H   IK G   D  ++N+L+ MY KCG   E   LF+    ++V  WN          
Sbjct: 539 QFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWN---------- 588

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   +MI+ Y Q+G  +EAL +F  M     +EPN V+ V
Sbjct: 589 ------------------------SMISTYAQHGQAEEALYVF-RMMGGTGVEPNYVTFV 623

Query: 262 SVLPTCSSLIGLSGGKQIHGF-----AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
            VL  C+    +  G +   F     AI     H  S+ N    ++ + G L  A+   E
Sbjct: 624 GVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVN----LFGRSGKLHAAKEFIE 679

Query: 317 DSSFNKDAITWSSIVSGYGLHG 338
                  A  W S++S   L G
Sbjct: 680 RMPIEPAAAVWRSLLSACHLFG 701


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 248/468 (52%), Gaps = 44/468 (9%)

Query: 55  PFVSTKLITAYALCGQPT---QSQLVFNSI-QHKDVYLYNSLINGYVKNHGHNEALELFS 110
           P+V   LI AYA C +     +S+ +F+++   +    + S++ GY +       L+LF 
Sbjct: 106 PYVVNALIEAYASCEEGVGVEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQ 165

Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
            M    +    FT +        I +L VG  +H L ++  F  ++ +ANSL+ MY  C 
Sbjct: 166 TMIQDGIELSPFTCSIALHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCA 225

Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
              +   LFDE+P+RN+ +WN  I                            AW +  N 
Sbjct: 226 NLLDARRLFDEIPERNLVTWNTMI----------------------------AWYSQCNH 257

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
            +       AL L  EM L    +PN  +L S+   C+ L  L  G+Q+HG A+R+    
Sbjct: 258 LM-------ALQLLREMNL----QPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGK 306

Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
           D+ +CNAL+DMYSKCGS+  A+++F    + KD ++W+S+++GYG++G  +E++ L+  M
Sbjct: 307 DLQMCNALVDMYSKCGSIANAKKMFNMMDY-KDKLSWTSMITGYGMNGYANESIQLFTSM 365

Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
           +  G  PD +  +G++ AC   GL++EG   + S+ + Y ++P  EI  CV ++L RAG+
Sbjct: 366 IHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGR 425

Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
           L  A D I  MP  P  ++WGAL+ A  MH N E+  LA + +I++ P+    YV L+N+
Sbjct: 426 LREAFDLIHRMPFAPDETVWGALLGACKMHKNVELGRLAARKIIEINPDRAKTYVLLANI 485

Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHP 518
           YA+  +W   A+ R +++  G +K  G SWI +  K + F+ AD + P
Sbjct: 486 YAAGNKWGEYADTRRLLRGIGSRKEAGTSWIDVTDKIYSFTTADSSSP 533



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 186/401 (46%), Gaps = 42/401 (10%)

Query: 58  STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV 117
           +T LI +    G    ++ VF+ +  +DV  + ++++GY  N  H+ AL+LF  M  + V
Sbjct: 6   ATTLIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGV 65

Query: 118 SPDDFTLATI-SKLSGEIKDLNVG-MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175
            P++FTL+++ +   G   D       +H ++++ G      + N+L+  Y  C      
Sbjct: 66  GPNEFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASC------ 119

Query: 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-RNVYAWTAMINGYVQN 234
                   +  VG                 V  SR++FD +   R   +WT+M+ GY + 
Sbjct: 120 --------EEGVG-----------------VEESRKLFDALGSGRTAASWTSMVAGYSRW 154

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
           G     L LF  M ++D IE +  +    L  C+S+  L  G+Q+H   +RK  N ++++
Sbjct: 155 GQEQTGLQLFQTM-IQDGIELSPFTCSIALHACASIANLCVGQQLHVLCLRKAFNANLTV 213

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            N+LIDMY  C +L  ARR+F++    ++ +TW+++++ Y          LL      + 
Sbjct: 214 ANSLIDMYCSCANLLDARRLFDEIP-ERNLVTWNTMIAWYSQCNHLMALQLLRE----MN 268

Query: 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
            +P+  T+  + SAC     +  G +++ + +     K   ++C  +VDM  + G +  A
Sbjct: 269 LQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKD-LQMCNALVDMYSKCGSIANA 327

Query: 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
                 M  +   S W ++++   M+G +      + S+I 
Sbjct: 328 KKMFNMMDYKDKLS-WTSMITGYGMNGYANESIQLFTSMIH 367



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 110/235 (46%), Gaps = 11/235 (4%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L   A+  +L + +Q H   L     +N  V+  LI  Y  C     ++ +F+ I  +++
Sbjct: 183 LHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNL 242

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N++I  Y + + H  AL+L   M   N+ P+ FTL +I+     +  L  G  +HG 
Sbjct: 243 VTWNTMIAWYSQCN-HLMALQLLREM---NLQPNCFTLTSITSACAGLASLRFGQQVHGA 298

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
           +++  +  D+ + N+L+ MY KCG  +    +F+ M  ++  SW   I+G+  +G     
Sbjct: 299 ALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNG---YA 355

Query: 207 VRSRRVFDQMKRRNVY----AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
             S ++F  M    V+     +  +I      G +DE    F  M  +  ++PNK
Sbjct: 356 NESIQLFTSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNK 410


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/478 (33%), Positives = 262/478 (54%), Gaps = 5/478 (1%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L+  A   + K  +Q HS ++ LG + + FVS  LI  YA CG    ++ +F+ +
Sbjct: 412 TFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEM 471

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
             KDV  +NSLI GY + +   E L LF  M    V  D  T+  +      + D ++  
Sbjct: 472 LVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMAD 531

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +     +    VDV L N+L+  Y + G+      +F +M  +N  + N  I  +A  G
Sbjct: 532 CMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGG 591

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           +   +V ++++FDQ+  +++ +W++MI  Y Q     ++L LF +MQ + +++P+ V + 
Sbjct: 592 N---LVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQ-RAKVKPDAVVIA 647

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SVL  C+ L  L  GK IH +  R  +  D  + N+LIDM++KCG +  A +VF +    
Sbjct: 648 SVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEME-E 706

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD ++W+SI+ G   +G   EA+ ++  M+  G +P+ +T +GVL AC    L+ EGL+ 
Sbjct: 707 KDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDH 766

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +  +   + ++P  +   CVV +L RAGQL++A +FI  MP+ P P +W  L+ A   HG
Sbjct: 767 FERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHG 826

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
           N  + ++A K L +L+P N  +Y+ LSN+YAS+ RW     +R  M D  ++KSP CS
Sbjct: 827 NVAVAEVATKKLSELDPSNSGDYMLLSNIYASADRWSDALNVRQWMADTAVRKSPACS 884



 Score =  219 bits (557), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 201/354 (56%), Gaps = 12/354 (3%)

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           MP +NV SWNV I+G A  G+      +R +FDQM  RNV +WT +I+GY +     EA+
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEY---ARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAV 57

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            LF  M +   I P+++++++V+P  S+L G+  G+ +HG+ ++K +  D  + N+LID+
Sbjct: 58  ALFRHM-MAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDL 116

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y+K GS+  + +VF++    ++ ++W+SI+SG+ +HG   EA+ L+ +M   G +P+ IT
Sbjct: 117 YAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRIT 176

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
            + V++AC   GL+ +GL  + S++  Y I P  +   C++DMLGRAG+L  A   I+ +
Sbjct: 177 FLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGL 236

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
           PVE +  +W  L+     +G  EM   A K +  LE E+  ++  LSN+     R+    
Sbjct: 237 PVEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAE 296

Query: 482 ELRTMMKDRGLKKSPGCSWISIHG--------KTHCFSVADKAHPCSVSIYEML 527
           + R ++ +R + K PG + +            K H   V    H C  ++ +++
Sbjct: 297 QARKLLDERKIVKVPGLALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVI 350



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 199/470 (42%), Gaps = 79/470 (16%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF-----NSI 81
           L V+ +   ++  K+ H+ ++  G  +  +  +K+I +YAL     QS LVF       I
Sbjct: 315 LVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYAL----QQSDLVFAHKVFEQI 370

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
           +    +L+N+L+ G  ++    +A+  +       + PD+ T   + K   +      G 
Sbjct: 371 ESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGE 430

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H   IK+GF++D+ ++NSL+ +Y  CG      ++FDEM  ++V SWN          
Sbjct: 431 QMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWN---------- 480

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                                   ++I GY Q     E L LF  MQ ++ ++ +KV++V
Sbjct: 481 ------------------------SLIGGYSQRNRFKEVLALFELMQAEE-VQADKVTMV 515

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE----- 316
            V+  C+ L   S    +  +  R  +  DV L N LID Y + G L  A +VF      
Sbjct: 516 KVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDK 575

Query: 317 -------------------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
                                    D   NKD I+WSS++  Y       +++ L+ +M 
Sbjct: 576 NTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQ 635

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
               KPD + I  VLSAC   G ++ G  I++ V     IK  T +   ++DM  + G +
Sbjct: 636 RAKVKPDAVVIASVLSACAHLGALDLGKWIHDYV-RRNNIKTDTIMENSLIDMFAKCGCM 694

Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
             AL     M  + + S W +++       N+  +D A      +  E P
Sbjct: 695 QEALQVFTEMEEKDTLS-WNSIILGL---ANNGFEDEALNIFYSMLTEGP 740



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 144/321 (44%), Gaps = 51/321 (15%)

Query: 61  LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
           +IT +A  G+   ++L+F+ +  ++V  +  LI+GY +   + EA+ LF +M    +SP 
Sbjct: 12  VITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPS 71

Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
           + T+  +      +  + +G ++HG  +K G + D  + NSL+ +Y K G     L +FD
Sbjct: 72  EITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFD 131

Query: 181 EM-PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
           EM  +RN+ SW   ISG A  G   L V                               E
Sbjct: 132 EMLDRRNLVSWTSIISGFAMHG---LSV-------------------------------E 157

Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL----- 294
           AL LF EM+ +  I PN+++ +SV+  CS      GG    G A  K + ++ ++     
Sbjct: 158 ALELFAEMR-RAGIRPNRITFLSVINACS-----HGGLVEQGLAFFKSMVYEYNIDPEIK 211

Query: 295 -CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV---SGYGLHGKGHEAVLLYNKM 350
               +IDM  + G L  A ++ E      + I W  ++   S YG    G  A+ + + +
Sbjct: 212 HFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDL 271

Query: 351 VCLGSKPDIITIVGVLSACGR 371
               S  D   +  VL+  GR
Sbjct: 272 E-RESGGDFAVLSNVLNELGR 291


>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 161/475 (33%), Positives = 261/475 (54%), Gaps = 6/475 (1%)

Query: 62  ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
            +A +  G    S  VF+ I    ++ +N +I GY  +     +L +F  M    V+PD 
Sbjct: 55  FSALSNSGDIDYSYRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDY 114

Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
            T   + K S  +     G+ +H   IK G   D  + NSL+ MY  CG       +F+ 
Sbjct: 115 LTYPFLVKASARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFES 174

Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
           M  +N+ SWN  + G+A  G+ ++   +++VF+ M+ R+V +W++ I+GYV+ G+  EA+
Sbjct: 175 MQGKNLVSWNSMLDGYAKCGEMAM---AQKVFESMQERDVRSWSSFIDGYVKAGEYREAM 231

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            +F +M+     + N+V++VSVL  C+ L  L  G+ +H + I   L   + L  +L+DM
Sbjct: 232 AVFEKMRAVGP-KANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDM 290

Query: 302 YSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
           Y+KCG+++ A  VF   S    D   W++++ G   HG   E++ L+ +M   G + D I
Sbjct: 291 YAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEI 350

Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
           T + +L+AC   GL+ E    + S++    + PT+E  AC+VD+L RAGQL  A  FI  
Sbjct: 351 TYLCLLAACAHGGLVKEAWNFFESLVKR-GMTPTSEHYACMVDVLARAGQLTTAYQFICQ 409

Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
           +P+EP+ S+ GA+ S  + H N ++ +   + LI+L+P N   Y+ LSN+YA  +RWD  
Sbjct: 410 IPIEPTASMLGAIFSGCINHRNFDLAETVGRKLIELDPNNDGRYIGLSNVYAVVKRWDDS 469

Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
             +R  M+ RG+KKSPG S++ I    H F   DK HP S   Y ML  ++  M+
Sbjct: 470 KSMREAMERRGVKKSPGFSFVEISEIHHRFIAHDKTHPDSDETYSMLHFVVCQMK 524



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 45/252 (17%)

Query: 35  SLKLTKQS-----HSQILSLGHISNPFVSTKLI--------------------------- 62
           S +L+KQ      H+QI+  GH S+ F+   LI                           
Sbjct: 124 SARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSW 183

Query: 63  ----TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
                 YA CG+   +Q VF S+Q +DV  ++S I+GYVK   + EA+ +F  M      
Sbjct: 184 NSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPK 243

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
            ++ T+ ++      +  L  G ++H   I     + ++L  SL+ MY KCG   E L +
Sbjct: 244 ANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFV 303

Query: 179 FDEM--PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYV 232
           F  +   Q +V  WN  I G A+ G   LV  S ++F +M+    R +   +  ++    
Sbjct: 304 FRGISKSQTDVFIWNAMIGGLATHG---LVEESLKLFKEMQMAGIRSDEITYLCLLAACA 360

Query: 233 QNGDLDEALVLF 244
             G + EA   F
Sbjct: 361 HGGLVKEAWNFF 372


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/465 (35%), Positives = 253/465 (54%), Gaps = 37/465 (7%)

Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
           M  + VSP  FT +++ K    + +L  G  +HG   K GF   V +  +L+  Y   GK
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
             E   +FDEM +R+V +W   IS HA +GD S    +R++FD+M  RN  +W AMI+GY
Sbjct: 61  IVEARRVFDEMSERDVFAWTTMISVHARTGDMS---SARQLFDEMPVRNTASWNAMIDGY 117

Query: 232 V-------------------------------QNGDLDEALVLFLEMQLKDRIEPNKVSL 260
                                           QN    EAL +F EMQ  + I+P++V++
Sbjct: 118 SRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQ-TNGIDPDEVTM 176

Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
            +++  C+ L  L  GK+IH +A+    + DV + +ALIDMY+KCGSLD +  VF     
Sbjct: 177 ATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLR- 235

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            K+   W+SI+ G  +HG   EA+ ++++M     KP+ +T + VL AC  +GL+ EG +
Sbjct: 236 KKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRK 295

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            + S+   + I P  E   C+VD+LG+AG L+ AL+ +++M +EP+  IWGAL+    +H
Sbjct: 296 RFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLH 355

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK-SPGCS 499
            N ++  +A      LEP N   Y  L N+YA   RW  VA +R  MK+ G++K SPG S
Sbjct: 356 RNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSS 415

Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
           WI +  K H F+ +DK+H  S  IY +L +L   ++ +   P LG
Sbjct: 416 WIEMDRKIHQFAASDKSHLASDEIYTLLVELDGQLKLSGYVPELG 460



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 157/338 (46%), Gaps = 50/338 (14%)

Query: 5   SARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITA 64
            AR  F  ++ R+  + T      +S   R+  ++  S  Q+     + N      +I  
Sbjct: 63  EARRVFDEMSERDVFAWTTM----ISVHARTGDMS--SARQLFDEMPVRNTASWNAMIDG 116

Query: 65  YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
           Y+       ++L+F+ + ++D+  + ++I  Y +N    EAL +F+ M  + + PD+ T+
Sbjct: 117 YSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTM 176

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
           ATI      +  L++G  IH  ++++GF +DV + ++L+ MY KCG   + L +F ++ +
Sbjct: 177 ATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRK 236

Query: 185 RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF 244
           +N+  WN  I G A                             ++GY +     EAL +F
Sbjct: 237 KNLFCWNSIIEGLA-----------------------------VHGYAE-----EALAMF 262

Query: 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSLCNALI 299
             MQ +++I+PN V+ +SVL  C+    +  G++        F+I  E+ H       ++
Sbjct: 263 SRMQ-REKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEH----YGCMV 317

Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
           D+  K G L+ A  +        +++ W +++ G  LH
Sbjct: 318 DLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLH 355


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 171/525 (32%), Positives = 289/525 (55%), Gaps = 39/525 (7%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T    L   +   +L+  KQ H  I+      + F+++ LI AY  C   + +Q +F+  
Sbjct: 342 TFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQC 401

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
              DV ++ ++I+GY+ N  + ++LE+F  +    +SP++ TL +I  + G +  L +G 
Sbjct: 402 NSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGR 461

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +HG  IK GF     +  +++ MY KCG+    +NL  E                    
Sbjct: 462 ELHGFIIKKGFDNRCNIGCAVIDMYAKCGR----MNLAYE-------------------- 497

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
                     +F+++ +R++ +W +MI    Q+ +   A+ +F +M +   I  + VS+ 
Sbjct: 498 ----------IFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSG-ICYDCVSIS 546

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           + L  C++L   S GK IHGF I+  L  DV   + LIDMY+KCG+L  A  VF+     
Sbjct: 547 AALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK-E 605

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLE 380
           K+ ++W+SI++  G HGK  +++ L+++MV   G +PD IT + ++S+C   G ++EG+ 
Sbjct: 606 KNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVR 665

Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
            + S+   Y I+P  E  ACVVD+ GRAG+L  A + +K+MP  P   +WG L+ A  +H
Sbjct: 666 FFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLH 725

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
            N E+ ++A   L+ L+P N   YV +SN +A++R W++V ++R++MK+R ++K PG SW
Sbjct: 726 KNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSW 785

Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLI--LIMRGAAASPHL 543
           I I+ +TH F   D  HP S  IY +L+ L+  L + G    P+L
Sbjct: 786 IEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIPQPYL 830



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/521 (24%), Positives = 236/521 (45%), Gaps = 84/521 (16%)

Query: 48  SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
           SLG   N FV++ LI AY   G+      +F+ +  KD  ++N ++NGY K    +  ++
Sbjct: 166 SLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIK 225

Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
            FS M    +SP+  T   +  +      +++G+ +HGL +  G   +  + NSL+SMY 
Sbjct: 226 GFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYS 285

Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG----------------------DFSL 205
           KCG+F +   LF  M + +  +WN  ISG+  SG                       FS 
Sbjct: 286 KCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSS 345

Query: 206 VVRSRRVFDQMK--------------RRNVYAWTAMINGYVQNGDLDEALVLF------- 244
           ++ S   F+ ++                +++  +A+I+ Y +   +  A  +F       
Sbjct: 346 LLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVD 405

Query: 245 --------------------LEM---QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
                               LEM    +K +I PN+++LVS+LP    L+ L  G+++HG
Sbjct: 406 VVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHG 465

Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
           F I+K  ++  ++  A+IDMY+KCG ++ A  +FE  S  +D ++W+S+++         
Sbjct: 466 FIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQSDNPS 524

Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT------T 395
            A+ ++ +M   G   D ++I   LSAC      N   E +   I+ + IK +      +
Sbjct: 525 AAIDIFRQMGVSGICYDCVSISAALSACA-----NLPSESFGKAIHGFMIKHSLASDVYS 579

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
           E  + ++DM  + G L  A++  KTM  E +   W ++++A   HG  +     +  +++
Sbjct: 580 E--STLIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVE 636

Query: 456 LEPENPSNYVSLSNLYASSRRWD---AVAELRTMMKDRGLK 493
                P     L  + +     D    V   R+M +D G++
Sbjct: 637 KSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQ 677



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 168/375 (44%), Gaps = 42/375 (11%)

Query: 3   LSSARNTFALVTSRNYTSATVQH----FLQVSATHRSLKLTKQSHSQILSLGHISNPFVS 58
           ++  + +  L  S  +   T+       LQ  +    L+  KQ H+ ++      + +  
Sbjct: 14  IAPYKKSLPLRNSSRFLEETIPRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTD 73

Query: 59  TKLITAYALCGQPTQSQLVFN--SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
            +++  YA+CG  +    +F    ++   +  +NS+I+ +V+N   N+AL  +  M    
Sbjct: 74  ERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFG 133

Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
           VSPD  T   + K    +K+      +      +G   +  +A+SL+  Y++ GK     
Sbjct: 134 VSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPS 193

Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
            LFD + Q++   WNV ++G                                  Y + G 
Sbjct: 194 KLFDRVLQKDCVIWNVMLNG----------------------------------YAKCGA 219

Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
           LD  +  F  M++ D+I PN V+   VL  C+S + +  G Q+HG  +   ++ + S+ N
Sbjct: 220 LDSVIKGFSVMRM-DQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKN 278

Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
           +L+ MYSKCG  D A ++F   S   D +TW+ ++SGY   G   E++  + +M+  G  
Sbjct: 279 SLLSMYSKCGRFDDASKLFRMMS-RADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVL 337

Query: 357 PDIITIVGVLSACGR 371
           PD IT   +L +  +
Sbjct: 338 PDAITFSSLLPSVSK 352



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 5/177 (2%)

Query: 18  YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
           Y   ++   L   A   S    K  H  ++     S+ +  + LI  YA CG    +  V
Sbjct: 540 YDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNV 599

Query: 78  FNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMY-YSNVSPDDFTLATISKLSGEIK 135
           F +++ K++  +NS+I     NHG   ++L LF  M   S + PD  T   I      + 
Sbjct: 600 FKTMKEKNIVSWNSIIAA-CGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVG 658

Query: 136 DLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSW 190
           D++ G+     ++   G          ++ ++ + G+ +E       MP   + G W
Sbjct: 659 DVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVW 715


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 172/493 (34%), Positives = 277/493 (56%), Gaps = 36/493 (7%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H++++     SN  + + L+T Y+ CG    +  +FN+I+ +DV  + S+I+G+ +N  +
Sbjct: 380 HAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKY 439

Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
            EALE +++M      PD   +A++      +K++N+G  IHGL+IK G   DV +A+SL
Sbjct: 440 MEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSL 499

Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
           + MY K        N+F +MP +N+ +WN                               
Sbjct: 500 VDMYSKFNFPKMSGNVFSDMPLKNLVAWN------------------------------- 528

Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
              ++I+ Y +NG  D ++ LF +M  +  + P+ VS+ SVL + SS+  L  GK +HG+
Sbjct: 529 ---SIISCYCRNGLPDLSISLFSQMT-QYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGY 584

Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
            IR+ +  D+ L NALIDMY KCG L  A+ +F++     + +TW+ +++G G HG   +
Sbjct: 585 LIRQRIPSDLQLENALIDMYIKCGFLKYAQHIFQN-MLQTNLVTWNIMIAGCGSHGDWLK 643

Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
           A+ L+++M   G  PD IT + +L++C   G I EGL+++  +   + I+P  E    +V
Sbjct: 644 AMSLFDEMRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIV 703

Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
           D+LGRAG+LD A  F+K +P+EP  SIW +L+ +  +H N E+  LA   L+ +EP   S
Sbjct: 704 DLLGRAGRLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELGKLAAHKLLDIEPSRGS 763

Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
           NYV L NLY  +   D  A LR  MK++GLKK+PGCSWI +      F   D + P ++ 
Sbjct: 764 NYVQLLNLYGENELQDRAANLRASMKEKGLKKTPGCSWIEVGNSIDVFFSGDSSSPRTIE 823

Query: 523 IYEMLDDLILIMR 535
           IY++L+ L   MR
Sbjct: 824 IYDLLNSLRRNMR 836



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 199/430 (46%), Gaps = 43/430 (10%)

Query: 29  VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK-DVY 87
           + A+   L   KQ H   +      +PF+ + LI  Y  CG+P  +  +F  ++ K +V 
Sbjct: 163 LGASDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVV 222

Query: 88  LYNSLINGYVKNHGHNEALELFSNMYYSNVS--PDDFTLATISKLSGEIKDLNVGMLIHG 145
            +N +I G+ +N     +LE++      NV      FT    +   GE   ++ GM +H 
Sbjct: 223 AWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEF--VSFGMQVHC 280

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             +K+GF  D  +  SL++MY KC                                   L
Sbjct: 281 DLVKLGFENDPYVCTSLLTMYSKC----------------------------------KL 306

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
           V  +  VFDQ+  +    W AMI+ YV NG   + L ++ +M++  +I P+ ++  +VL 
Sbjct: 307 VEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVL-QIPPDSLTATNVLS 365

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
           +C  +     G+ IH   +++ +  +V+L +AL+ MYSKCG+ D A  +F ++   +D +
Sbjct: 366 SCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIF-NTIKGRDVV 424

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
            W S++SG+  + K  EA+  YN M   G KPD   +  V+SAC     +N G  I+   
Sbjct: 425 AWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLA 484

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           I +  ++    + + +VDM  +      + +    MP++ +   W +++S    +G  ++
Sbjct: 485 IKS-GLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLK-NLVAWNSIISCYCRNGLPDL 542

Query: 446 QDLAYKSLIQ 455
               +  + Q
Sbjct: 543 SISLFSQMTQ 552



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 199/452 (44%), Gaps = 48/452 (10%)

Query: 17  NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQ 75
           N T  T    L+      +L+  K  HS I++ G   S+P+++T LI  Y  CG    + 
Sbjct: 46  NATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAV 105

Query: 76  LVFNSIQH-----KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
            VF+ +       +DV  +NS++NGY +     E +  F  M    V PD ++L  +  L
Sbjct: 106 KVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCIL--L 163

Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGS 189
                 L     IHG S++  F  D  L + L+ MY  CG+  +   LF E+  + NV +
Sbjct: 164 GASDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVA 223

Query: 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL 249
           WNV                                  MI G+ +NG  + +L ++L +  
Sbjct: 224 WNV----------------------------------MIGGFGENGLWENSLEVYL-LAK 248

Query: 250 KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
            + ++    S  S L  C     +S G Q+H   ++    +D  +C +L+ MYSKC  ++
Sbjct: 249 NENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVE 308

Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
            A  VF+  S  K  + W++++S Y  +G+ ++ + +Y +M  L   PD +T   VLS+C
Sbjct: 309 DAENVFDQVSVKKTEL-WNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSC 367

Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI 429
              G  + G  I+  ++    I+    + + ++ M  + G  D A     T+      + 
Sbjct: 368 CLVGSYDFGRLIHAELVKR-PIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVA- 425

Query: 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
           WG+++S         M+ L + + + +  E P
Sbjct: 426 WGSMISG-FCQNRKYMEALEFYNSMTVYGEKP 456



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 199/437 (45%), Gaps = 43/437 (9%)

Query: 6   ARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
           A+N    + S ++TS      L        +    Q H  ++ LG  ++P+V T L+T Y
Sbjct: 247 AKNENVKLVSASFTST-----LSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMY 301

Query: 66  ALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125
           + C     ++ VF+ +  K   L+N++I+ YV N    + L+++  M    + PD  T  
Sbjct: 302 SKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTAT 361

Query: 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185
            +      +   + G LIH   +K     +V L ++L++MY KCG   +  ++F+ +  R
Sbjct: 362 NVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGR 421

Query: 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
           +V +W                                   +MI+G+ QN    EAL  + 
Sbjct: 422 DVVAWG----------------------------------SMISGFCQNRKYMEALEFYN 447

Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305
            M +    +P+   + SV+  C+ L  ++ G  IHG AI+  L  DV + ++L+DMYSK 
Sbjct: 448 SMTVYGE-KPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKF 506

Query: 306 GSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365
                +  VF D    K+ + W+SI+S Y  +G    ++ L+++M   G  PD ++I  V
Sbjct: 507 NFPKMSGNVFSDMPL-KNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSV 565

Query: 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP 425
           L +     ++ +G  ++  +I   RI    ++   ++DM  + G L  A    + M ++ 
Sbjct: 566 LVSVSSVAVLRKGKAVHGYLIRQ-RIPSDLQLENALIDMYIKCGFLKYAQHIFQNM-LQT 623

Query: 426 SPSIWGALVSASVMHGN 442
           +   W  +++    HG+
Sbjct: 624 NLVTWNIMIAGCGSHGD 640



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 170/371 (45%), Gaps = 48/371 (12%)

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-D 155
           V+   + +AL+ +S    + ++   FT  ++ K  G + +L  G  IH   I  GF   D
Sbjct: 28  VQQGQYVDALQFYSR---NPLNATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSD 84

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
             +  SL++ Y KCG F   + +FD++P+  V                            
Sbjct: 85  PYITTSLINFYFKCGSFGNAVKVFDKLPESEVSG-------------------------- 118

Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
              ++V  W +++NGY + G   E +  F  MQL   + P+  SL  +L      +G + 
Sbjct: 119 ---QDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFG-VRPDAYSLCILLGASDGHLGYA- 173

Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
            KQIHG+++RK    D  L + LI MY  CG    A R+F++     + + W+ ++ G+G
Sbjct: 174 -KQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFG 232

Query: 336 LHGKGHEAVLLY----NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391
            +G    ++ +Y    N+ V L S     +    LSAC +   ++ G++++  ++     
Sbjct: 233 ENGLWENSLEVYLLAKNENVKLVSA----SFTSTLSACCQGEFVSFGMQVHCDLVKL-GF 287

Query: 392 KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
           +    +C  ++ M  +   ++ A +    + V+ +  +W A++SA V +G S      YK
Sbjct: 288 ENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKT-ELWNAMISAYVGNGRSYDGLKIYK 346

Query: 452 SL--IQLEPEN 460
            +  +Q+ P++
Sbjct: 347 QMKVLQIPPDS 357


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 169/486 (34%), Positives = 278/486 (57%), Gaps = 16/486 (3%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP---TQSQLVFNSIQHKDVYLYN 90
           +SL   +Q H+Q++    +++ F  ++LI   +L G       +  VF+ IQH + +++ 
Sbjct: 17  KSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFF 76

Query: 91  SLINGYVKNHGHNEALELFSNM-----YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145
           +LI G+       E+L L++ M     Y S V   +F++ ++ K  G++   + G  +HG
Sbjct: 77  ALIKGFSDTSNPVESLILYARMLSCLNYSSGV---EFSIPSVLKACGKLLAFDEGRQVHG 133

Query: 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205
             +K     D  + NS++ MY+  G+      +FD MP R+V SWN  I+G+  +G+  L
Sbjct: 134 QVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIEL 193

Query: 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265
              +++VF+ M  ++V  WT+MI+ YVQN    +AL LF EM L   + P+  ++VSVL 
Sbjct: 194 ---AKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREM-LSLGLRPDGPAIVSVLS 249

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLC-NALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             + L  +  GK +H +    ++        +ALIDMYSKCG ++ A  VF   S  ++ 
Sbjct: 250 AIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNI 309

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
             W+S++SG  +HG   EA+ ++ +M  +  +P+ IT +G+LS C   GL+ EG   + S
Sbjct: 310 GDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFES 369

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
           +   Y+I P  +   C++D+ GRAG+L+ AL  I+ MP E     W A++SAS+ HG+ E
Sbjct: 370 MHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIE 429

Query: 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH 504
           +   A    I+L P++ S+YV LSN+YA + RWD VA++R MM+ RG+KK  GCS + ++
Sbjct: 430 IGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVN 489

Query: 505 GKTHCF 510
           GK H F
Sbjct: 490 GKVHEF 495


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 178/573 (31%), Positives = 289/573 (50%), Gaps = 67/573 (11%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGY 96
           +L  Q H   L     S+  V T  +  YA C   + +  +F+ +   ++  YN++I GY
Sbjct: 275 RLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGY 334

Query: 97  VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
            +N    +A +LF  +  ++ S D+ +L+     +  IK  + G+ +HGL+IK     ++
Sbjct: 335 ARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNI 394

Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG---HASSGD----FSLVVRS 209
            +AN+++ MY KCG   E   LFDEM  R+  SWN  I+    + S G     F  ++RS
Sbjct: 395 CVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRS 454

Query: 210 RRVFDQMKRRNV-----------------------------YAWTAMINGYVQNGDLDEA 240
           +   D+    +V                             +  +A+++ Y + G ++EA
Sbjct: 455 KMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEA 514

Query: 241 LVL------------------------------FLEMQLKDRIEPNKVSLVSVLPTCSSL 270
             +                              F    L+  +EP+  +  +VL TC++L
Sbjct: 515 EKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANL 574

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
             +  GKQIH   I+ EL  DV + + L+DMYSKCG++  +  +F  +   +D++TW+++
Sbjct: 575 ATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAP-KRDSVTWNAM 633

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           + G+  HG G EA+ L+  M+    KP+  T V VL AC   G   +GL  +  + + Y 
Sbjct: 634 ICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYA 693

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           ++P  E  +C+VD+LGR+GQ++ AL  I+ MP E    IW  L+S   + GN E+ + A 
Sbjct: 694 LEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAA 753

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
            SL++L+PE+ S Y  LSN+YA +  W  V+++R  M+   LKK PGCSWI +  + H F
Sbjct: 754 SSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTF 813

Query: 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            V DKAHP    IY +LD LI  MR +  +P +
Sbjct: 814 LVCDKAHPKCEMIYSLLDLLICDMRRSGCAPEI 846



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 135/547 (24%), Positives = 243/547 (44%), Gaps = 119/547 (21%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC------------- 68
           T  H  Q  +  R+LK  K++H+ ++  G     FV+  LI  Y  C             
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 69  ------------------GQPTQSQLVFNSI-QHKDVYLYNSLINGYVKNHGHNEALELF 109
                             G+   +Q VFNS+  H DV  +NSLI+GY++N    +++ +F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169
             M    V  D  TLA   K+   ++D  +G+ IHG+++++GF  DV+  ++L+ MY KC
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR---------- 219
               + L++F E+P +N  SW+  I+G   +     ++R  ++F +M+R+          
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQ---LLRGLKLFKEMQRKGIGVSQSTYA 262

Query: 220 -----------------------------NVYAWTAMINGYVQNGDLDEALVLF------ 244
                                        +V   TA ++ Y +  ++ +A  LF      
Sbjct: 263 SVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDH 322

Query: 245 -----------------------LEMQL-KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
                                  L +QL K+    ++VSL   L   + + G S G Q+H
Sbjct: 323 NLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLH 382

Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH--- 337
           G AI+  L+ ++ + NA++DMY KCG+L  A  +F++    +D ++W++I++    +   
Sbjct: 383 GLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEI-RDPVSWNAIITACEQNESE 441

Query: 338 GK--GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           GK   H   +L +KM     +PD  T   VL AC      + G+E++  +I +  +    
Sbjct: 442 GKTLSHFGAMLRSKM-----EPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKS-GMGLKM 495

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
            + + +VDM  + G ++ A + I     E +   W A++S   +   SE     +  +++
Sbjct: 496 FVGSALVDMYSKCGMMEEA-EKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLE 554

Query: 456 L--EPEN 460
           +  EP+N
Sbjct: 555 MGVEPDN 561



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 169/348 (48%), Gaps = 12/348 (3%)

Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
           T + I +     + L  G   H   I  GF   V + N L+ MYVKC        +F+EM
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR-NVYAWTAMINGYVQNGDLDEAL 241
           PQR++ SWN  + G A +G   L   ++ VF+ M    +V +W ++I+GY+QNGD+ +++
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMEL---AQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSI 142

Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
            +FL+M+    +  +  +L   L  CS L     G QIHG A++   ++DV   +AL+DM
Sbjct: 143 AVFLKMR-DLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDM 201

Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
           Y+KC SL+ +  VF +   +K+ I+WS+ ++G   + +    + L+ +M   G      T
Sbjct: 202 YAKCNSLEDSLDVFSELP-DKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQST 260

Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
              V  +C        G +++   + T        +    +DM  +   +  A      +
Sbjct: 261 YASVFRSCAGLSASRLGTQLHCHALKT-DFGSDVIVGTATLDMYAKCDNMSDAYKLFSLL 319

Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS-NYVSLS 468
           P     S + A++   + +  +E    A+K  +QL+  + S + VSLS
Sbjct: 320 PDHNLQS-YNAMI---IGYARNEQGFQAFKLFLQLQKNSFSFDEVSLS 363



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 144/317 (45%), Gaps = 44/317 (13%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
           L+  A  R+     + H +I+  G     FV + L+  Y+ CG   +++ +   ++ + +
Sbjct: 467 LKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTM 526

Query: 87  YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
             +N++I+G+       ++   FS+M    V PD+FT AT+      +  + +G  IH  
Sbjct: 527 VSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQ 586

Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
            IK+  + DV + ++L+ MY KCG   + L +F + P+R+  +WN  I            
Sbjct: 587 MIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMIC----------- 635

Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                                  G+  +G  +EAL LF E  L + I+PN  + VSVL  
Sbjct: 636 -----------------------GFAYHGLGEEALELF-EHMLHENIKPNHATFVSVLRA 671

Query: 267 CSSLIGLSGG-----KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           CS +     G     K    +A+  +L H     + ++D+  + G ++ A R+ +D  F 
Sbjct: 672 CSHVGNAKKGLFYFQKMASIYALEPQLEH----YSCMVDILGRSGQVEEALRLIQDMPFE 727

Query: 322 KDAITWSSIVSGYGLHG 338
            DAI W +++S   + G
Sbjct: 728 ADAIIWRTLLSICKIQG 744



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 102/249 (40%), Gaps = 42/249 (16%)

Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED----- 317
           +   CS+   L  GK+ H   I       V + N LI MY KC +L+ A +VFE+     
Sbjct: 30  IFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRD 89

Query: 318 ---------------------SSFNK-----DAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
                                + FN      D ++W+S++SGY  +G   +++ ++ KM 
Sbjct: 90  IVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMR 149

Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT---YRIKPTTEICACVVDMLGRA 408
            LG   D  T+   L  C        G++I+   +     Y +   + +    VDM  + 
Sbjct: 150 DLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSAL----VDMYAKC 205

Query: 409 GQLDRALDFIKTMP----VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
             L+ +LD    +P    +  S +I G + +  ++ G    +++  K +   +    S +
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 465 VSLSNLYAS 473
            S + L AS
Sbjct: 266 RSCAGLSAS 274


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 168/502 (33%), Positives = 276/502 (54%), Gaps = 13/502 (2%)

Query: 39  TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV------FNSIQHKDVYLYNSL 92
           T  S ++ +        F+   ++   AL    T S L+      F+ +  +DV  + +L
Sbjct: 144 TSSSPTEAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTL 203

Query: 93  INGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
           I+GY +    +EA  +F  M  + +V P++ TL   +  +G++  L +G  +H   ++ G
Sbjct: 204 IDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESG 263

Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
             + V L N+L+ M+ KCG  +    +FD MP ++V SW   +S +A  GD      + +
Sbjct: 264 GRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLE---NAAK 320

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           +F ++  RNV +W+ M+  Y      DEA+ +F +M +   +EP   +LVSVL  C+ L 
Sbjct: 321 LFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDM-IAAGVEPIDATLVSVLSACAQLC 379

Query: 272 GLSGGKQIHG-FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
            L  G  ++  + +  ++    +L NA IDM++KCG +  A R+F +   +K+ ++W+++
Sbjct: 380 SLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNME-DKNVVSWNTM 438

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           +  +GLHG+  EA+ L+ +    G  PD  T +GVLSAC   GL++EG   +  +   Y 
Sbjct: 439 IMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYG 498

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
           I+P  E  AC++D+LG+ G L  A +  ++MPV    + WGAL++A  MHGN E+   A 
Sbjct: 499 IEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAA 558

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
             L  L+P +   YV +S +YAS  +W  V  LRT+M+DR +KK+PGCS I + GK H F
Sbjct: 559 DKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEF 618

Query: 511 SVADKAHPCSVSIYEMLDDLIL 532
            VAD +H  S  IY  L ++ L
Sbjct: 619 LVADVSHVHSEDIYAALGNIYL 640



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 133/343 (38%), Gaps = 82/343 (23%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L L +  H  I+  G   +  +   L+  +  CG    ++ VF+ +  KDVY + S+++ 
Sbjct: 249 LGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSA 308

Query: 96  YVK-----------------------------NHGH--NEALELFSNMYYSNVSPDDFTL 124
           Y K                             +H +  +EA+ +F++M  + V P D TL
Sbjct: 309 YAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL 368

Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI--LANSLMSMYVKCGKFSECLNLFDEM 182
            ++     ++  L+VG  ++   I +   V++   L+N+ + M+ KCG       LF  M
Sbjct: 369 VSVLSACAQLCSLDVGTWLYDTYI-VSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNM 427

Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
             +NV SWN  I  H                                    +G  +EAL 
Sbjct: 428 EDKNVVSWNTMIMAHG----------------------------------LHGQPEEALH 453

Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG-------KQIHGFAIRKELNHDVSLC 295
           LF E +  + I P++ + + VL  CS    +S G       K ++G   R E        
Sbjct: 454 LFQEFK-GNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHY------ 506

Query: 296 NALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
             +ID+  K G L  A  V        D   W ++++   +HG
Sbjct: 507 ACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHG 549


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 183/590 (31%), Positives = 290/590 (49%), Gaps = 76/590 (12%)

Query: 26  FLQVSATHRSLKLTKQSHSQILSLGHISNPF-VSTKLITAYALCGQPTQSQLVFNSIQHK 84
           F + S      +  ++ H+ ++  G   N   +   L+  YA  G    +  VF  +  K
Sbjct: 392 FSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEK 451

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
           D   +NSLI+G  +N    +A E F  M  +   P +FTL +       +  + +G  IH
Sbjct: 452 DSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIH 511

Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
              +K+G   DV ++N+L+++Y + G F+ECL +F  MP+ +  SWN  I   A S   +
Sbjct: 512 CDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIG--ALSDSEA 569

Query: 205 LVVRSRRVFDQMKR--------------------------RNVYAWT------------- 225
            V ++ + F QM R                            ++A               
Sbjct: 570 SVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGN 629

Query: 226 AMINGYVQNGDLDEALVLFLEM-QLKDRIEPNKV-------------------------- 258
           A+++ Y + G+++E   +F  M + +D +  N +                          
Sbjct: 630 ALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQR 689

Query: 259 ----SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
               +  ++L  C+S+  L  G ++H   IR  L  DV + +AL+DMYSKCG +D A R 
Sbjct: 690 LDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRF 749

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           FE     ++  +W+S++SGY  HG G +A+ L+ +M+  G  PD +T VGVLSAC   G 
Sbjct: 750 FELMPL-RNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGF 808

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           + EG E + S+   YR+ P  E  +C+VD+LGRAG+LD   DFI +MP++P+  IW  ++
Sbjct: 809 VEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVL 868

Query: 435 SASVMHG--NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
            A       N+E+   A + L++LEP+N  NYV L+N+YAS  +W+ VA+ RT MK+  +
Sbjct: 869 GACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAV 928

Query: 493 KKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
           KK  GCSW+++    H F   DK HP    IY+ L +L   MR A   P 
Sbjct: 929 KKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQ 978



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 187/422 (44%), Gaps = 80/422 (18%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           ++ H Q +  G + N F+S  LI  Y   G    +Q +F+ + ++++  +  LI+GY +N
Sbjct: 91  RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQN 150

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGE--IKDLNVGMLIHGLSIKIGFVVDVI 157
              +EA   F +M  +   P+ +   +  +   E       +G+ IHGL  K  +  DV+
Sbjct: 151 GKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVV 210

Query: 158 LANSLMSMYVKC-GKFSECLNLFDEMPQRNVGSWNVRISGHASSGD----FSLVVRSRR- 211
           + N L+SMY  C    ++  ++FD +  RN  SWN  IS ++  GD    + L    ++ 
Sbjct: 211 VCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKE 270

Query: 212 -----------------------------VFDQMKRR--------NVYAWTAMINGYVQN 234
                                        V +QM  R        ++Y  +A+++G+ + 
Sbjct: 271 GLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARF 330

Query: 235 GDLDEALVLFLEM-----------------------------QLKDRIEPNKVSLVSVLP 265
           G  D+A  +F +M                             ++KD +  N  S V +L 
Sbjct: 331 GLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLS 390

Query: 266 TCSSLI----GLSGGKQIHGFAIRKELNHD-VSLCNALIDMYSKCGSLDCARRVFEDSSF 320
             S       G   G+++H   IR  LN + V++ N L++MY+K G++  A  VFE    
Sbjct: 391 AFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFE-LMV 449

Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
            KD+++W+S++SG   +    +A   +++M   GS P   T++  LS+C   G I  G +
Sbjct: 450 EKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQ 509

Query: 381 IY 382
           I+
Sbjct: 510 IH 511



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 149/328 (45%), Gaps = 65/328 (19%)

Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
           +H  SIK GFV ++ L+N+L+++YV+ G               ++GS             
Sbjct: 93  LHLQSIKYGFVGNLFLSNTLINIYVRIG---------------DLGS------------- 124

Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
                 ++++FD+M  RN+  W  +I+GY QNG  DEA   F +M ++    PN  +  S
Sbjct: 125 ------AQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDM-VRAGFIPNHYAFGS 177

Query: 263 VLPTC--SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC-GSLDCARRVFEDSS 319
            L  C  S   G   G QIHG   +     DV +CN LI MY  C  S + AR VF+   
Sbjct: 178 ALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIG 237

Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKM----VCLGSKPDIITIVGVLSACGRSGLI 375
             +++I+W+SI+S Y   G    A  L++ M    +    KP+  T   +++    S  +
Sbjct: 238 I-RNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSS--V 294

Query: 376 NEGLEIYNSVINTYRIKPT-----TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW 430
           + GL +   ++   R++ +       + + +V    R G  D A +  + M V    S+ 
Sbjct: 295 DFGLCVLEQMLA--RVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMN 352

Query: 431 GALV----------SASVMHGNSEMQDL 448
           G +V          +A V H   EM+DL
Sbjct: 353 GLMVGLVKQKQGEAAAKVFH---EMKDL 377



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 177/408 (43%), Gaps = 42/408 (10%)

Query: 36  LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
           L + +Q  +++   G + + +VS+ L++ +A  G    ++ +F  +  ++V   N L+ G
Sbjct: 298 LCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVG 357

Query: 96  YVKNHGHNEALELFSNMY-YSNVSPDDFT--LATISKLSGEIKDLNVGMLIHGLSIKIGF 152
            VK      A ++F  M     ++ D +   L+  S+ S   +    G  +H   I+ G 
Sbjct: 358 LVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGL 417

Query: 153 VVD-VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
             + V + N L++MY K G  ++  +                                  
Sbjct: 418 NDNKVAIGNGLVNMYAKSGAIADACS---------------------------------- 443

Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
           VF+ M  ++  +W ++I+G  QN   ++A   F  M+    + P+  +L+S L +C+SL 
Sbjct: 444 VFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSM-PSNFTLISTLSSCASLG 502

Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIV 331
            +  G+QIH   ++  L+ DVS+ NAL+ +Y++ G      +VF       D ++W+S++
Sbjct: 503 WIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMP-EYDQVSWNSVI 561

Query: 332 SGYG-LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
                      +AV  + +M+  G     +T + +LSA     L     +I+  V+  Y 
Sbjct: 562 GALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLK-YC 620

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438
           +   T I   ++   G+ G+++        M        W +++S  +
Sbjct: 621 LSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYI 668



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 13/168 (7%)

Query: 258 VSLVSVLPTCSSLIGLSGG-------KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDC 310
            +L S   T  SLI    G       +++H  +I+     ++ L N LI++Y + G L  
Sbjct: 65  TTLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGS 124

Query: 311 ARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370
           A+++F++ S N++ +TW+ ++SGY  +GK  EA   +  MV  G  P+       L AC 
Sbjct: 125 AQKLFDEMS-NRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQ 183

Query: 371 RSGL--INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
            SG      G++I+  +I+  R      +C  ++ M G    LD A D
Sbjct: 184 ESGPSGCKLGVQIHG-LISKTRYGSDVVVCNVLISMYGSC--LDSAND 228


>gi|15241649|ref|NP_196466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171897|sp|Q9FNN9.1|PP370_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g08490
 gi|9759343|dbj|BAB09998.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003927|gb|AED91310.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 849

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 167/521 (32%), Positives = 294/521 (56%), Gaps = 11/521 (2%)

Query: 20  SATVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVF 78
           S T+   L V A    L   K+ HS IL   ++  +  V   LI+ YA  G  + +   F
Sbjct: 330 SVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAF 389

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + +  KD+  +N++++ +  +    + L L  ++    ++ D  T+ ++ K    ++ + 
Sbjct: 390 SLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIG 449

Query: 139 VGMLIHGLSIKIGFVVD---VILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRI 194
               +HG S+K G + D     L N+L+  Y KCG       +F  + +R  + S+N  +
Sbjct: 450 KVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLL 509

Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
           SG+ +SG       ++ +F +M   ++  W+ M+  Y ++   +EA+ +F E+Q +  + 
Sbjct: 510 SGYVNSGSHD---DAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFREIQARG-MR 565

Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
           PN V+++++LP C+ L  L   +Q HG+ IR  L  D+ L   L+D+Y+KCGSL  A  V
Sbjct: 566 PNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSV 624

Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
           F+ S   +D + ++++V+GY +HG+G EA+++Y+ M     KPD + I  +L+AC  +GL
Sbjct: 625 FQ-SDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGL 683

Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
           I +GL+IY+S+   + +KPT E  AC VD++ R G+LD A  F+  MPVEP+ +IWG L+
Sbjct: 684 IQDGLQIYDSIRTVHGMKPTMEQYACAVDLIARGGRLDDAYSFVTQMPVEPNANIWGTLL 743

Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
            A   +   ++       L+Q E ++  N+V +SN+YA+  +W+ V ELR +MK + +KK
Sbjct: 744 RACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKK 803

Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
             GCSW+ + G+ + F   D +HP   SI+++++ L L M+
Sbjct: 804 PAGCSWLEVDGQRNVFVSGDCSHPRRDSIFDLVNALYLQMK 844



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 182/401 (45%), Gaps = 45/401 (11%)

Query: 43  HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
           H  +  LGHI+   VS  ++  YA C +    Q +F  +   D  ++N ++ G   + G 
Sbjct: 44  HGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNIVLTGLSVSCG- 102

Query: 103 NEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
            E +  F  M++++   P   T A +  L   + D   G  +H   IK G   D ++ N+
Sbjct: 103 RETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNA 162

Query: 162 LMSMYVKCGK-FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
           L+SMY K G  F +    FD +  ++V SWN                             
Sbjct: 163 LVSMYAKFGFIFPDAYTAFDGIADKDVVSWN----------------------------- 193

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL---IGLSGGK 277
                A+I G+ +N  + +A   F  M LK+  EPN  ++ +VLP C+S+   I    G+
Sbjct: 194 -----AIIAGFSENNMMADAFRSFCLM-LKEPTEPNYATIANVLPVCASMDKNIACRSGR 247

Query: 278 QIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           QIH + +++  L   V +CN+L+  Y + G ++ A  +F     +KD ++W+ +++GY  
Sbjct: 248 QIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMG-SKDLVSWNVVIAGYAS 306

Query: 337 HGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
           + +  +A  L++ +V  G   PD +TI+ +L  C +   +  G EI++ ++    +   T
Sbjct: 307 NCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDT 366

Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
            +   ++    R G    A      M  +   S W A++ A
Sbjct: 367 SVGNALISFYARFGDTSAAYWAFSLMSTKDIIS-WNAILDA 406



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 202/424 (47%), Gaps = 60/424 (14%)

Query: 2   ILSSARNTFALV----TSRNYTSATVQHFLQVSAT---HRSLKLTKQSHSQILSLGHI-S 53
           +++ A  +F L+    T  NY  AT+ + L V A+   + + +  +Q HS ++    + +
Sbjct: 204 MMADAFRSFCLMLKEPTEPNY--ATIANVLPVCASMDKNIACRSGRQIHSYVVQRSWLQT 261

Query: 54  NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
           + FV   L++ Y   G+  ++  +F  +  KD+  +N +I GY  N    +A +LF N+ 
Sbjct: 262 HVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLV 321

Query: 114 YS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILANSLMSMYVKCGK 171
           +  +VSPD  T+ +I  +  ++ DL  G  IH   ++  +++ D  + N+L+S Y + G 
Sbjct: 322 HKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNALISFYARFGD 381

Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASS-GDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
            S     F  M  +++ SWN  +   A S   F  +     +                  
Sbjct: 382 TSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHL------------------ 423

Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
                 L+EA+ L            + V+++S+L  C ++ G+   K++HG++++  L H
Sbjct: 424 ------LNEAITL------------DSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLH 465

Query: 291 DVS---LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
           D     L NAL+D Y+KCG+++ A ++F   S  +  ++++S++SGY   G   +A +L+
Sbjct: 466 DEEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLF 525

Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
            +M    S  D+ T   ++     S   NE + ++   I    ++P T     ++++L  
Sbjct: 526 TEM----STTDLTTWSLMVRIYAESCCPNEAIGVFRE-IQARGMRPNT---VTIMNLLPV 577

Query: 408 AGQL 411
             QL
Sbjct: 578 CAQL 581



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/444 (23%), Positives = 190/444 (42%), Gaps = 48/444 (10%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQP-TQSQLVFNSIQHKDVYLYNSLINGYVK 98
           K  HS I+  G   +  V   L++ YA  G     +   F+ I  KDV  +N++I G+ +
Sbjct: 142 KSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSE 201

Query: 99  NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV----GMLIHGLSIKIGFV- 153
           N+   +A   F  M      P+  T+A +  +   + D N+    G  IH   ++  ++ 
Sbjct: 202 NNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASM-DKNIACRSGRQIHSYVVQRSWLQ 260

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
             V + NSL+S Y++ G+  E  +LF  M  +++ S                        
Sbjct: 261 THVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVS------------------------ 296

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                     W  +I GY  N +  +A  LF  +  K  + P+ V+++S+LP C+ L  L
Sbjct: 297 ----------WNVVIAGYASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDL 346

Query: 274 SGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
           + GK+IH + +R   L  D S+ NALI  Y++ G    A   F   S  KD I+W++I+ 
Sbjct: 347 ASGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMS-TKDIISWNAILD 405

Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
            +    K  + + L + ++      D +TI+ +L  C     I +  E++   +    + 
Sbjct: 406 AFADSPKQFQFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLH 465

Query: 393 PTTE--ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
              E  +   ++D   + G ++ A      +    +   + +L+S  V   NS   D A 
Sbjct: 466 DEEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYV---NSGSHDDAQ 522

Query: 451 KSLIQLEPENPSNYVSLSNLYASS 474
               ++   + + +  +  +YA S
Sbjct: 523 MLFTEMSTTDLTTWSLMVRIYAES 546



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 128/310 (41%), Gaps = 38/310 (12%)

Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
           S    D      + K    + DL  G  +HG   K+G +    ++ S+++MY KC +  +
Sbjct: 15  SGFGTDHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDD 74

Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
           C  +F +M   +   WN+ ++G        L V   R                       
Sbjct: 75  CQKMFRQMDSLDPVVWNIVLTG--------LSVSCGR----------------------- 103

Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
               E +  F  M   D  +P+ V+   VLP C  L     GK +H + I+  L  D  +
Sbjct: 104 ----ETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLV 159

Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
            NAL+ MY+K G +        D   +KD ++W++I++G+  +    +A   +  M+   
Sbjct: 160 GNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEP 219

Query: 355 SKPDIITIVGVLSACG---RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
           ++P+  TI  VL  C    ++     G +I++ V+    ++    +C  +V    R G++
Sbjct: 220 TEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRI 279

Query: 412 DRALDFIKTM 421
           + A      M
Sbjct: 280 EEAASLFTRM 289



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 22/220 (10%)

Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV--SLCNALIDMYSKCGSLDCARRVFED 317
            + V+  C+S+  L+ G+ +HG   +  L H     +  ++++MY+KC  +D  +++F  
Sbjct: 24  FLDVVKACASVSDLTSGRALHGCVFK--LGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQ 81

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLIN 376
              + D + W+ +++G  +   G E +  +  M      KP  +T   VL  C R G   
Sbjct: 82  MD-SLDPVVWNIVLTGLSV-SCGRETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSY 139

Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL----DRALDFIKTMPVEPSPSIWGA 432
            G  +++ +I    ++  T +   +V M  + G +      A D I    V      W A
Sbjct: 140 NGKSMHSYIIKA-GLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVS----WNA 194

Query: 433 LVSASVMHGNSEMQDLAYKS--LIQLEPENPSNYVSLSNL 470
           +++      N+ M D A++S  L+  EP  P NY +++N+
Sbjct: 195 IIAG--FSENNMMAD-AFRSFCLMLKEPTEP-NYATIANV 230


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 172/522 (32%), Positives = 275/522 (52%), Gaps = 36/522 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  +   +  L +Q H  ++     S+ ++   L+  YA       ++ VF+ +
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            H+D+ L N+LI+G      H+EAL LF  +    +  +  TLA + K +  ++  +   
Sbjct: 365 FHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H L++KIGF+ D  + N L+  Y KC   S+   +F+E                 SSG
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE----------------CSSG 468

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D                  + A T+MI    Q    + A+ LF+EM L+  +EP+   L 
Sbjct: 469 D------------------IIACTSMITALSQCDHGEGAIKLFMEM-LRKGLEPDPFVLS 509

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C+SL     GKQ+H   I+++   D    NAL+  Y+KCGS++ A   F  S   
Sbjct: 510 SLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFS-SLPE 568

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +  ++WS+++ G   HG G  A+ L+ +MV  G  P+ IT+  VL AC  +GL++E    
Sbjct: 569 RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRY 628

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +NS+   + I  T E  +C++D+LGRAG+LD A++ + +MP + + SIWGAL+ AS +H 
Sbjct: 629 FNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHK 688

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           + E+  LA + L  LEPE    +V L+N YAS+  W+ VA++R +MKD  +KK P  SWI
Sbjct: 689 DPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWI 748

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            +  K H F V DK+HP +  IY  L +L  +M  A   P++
Sbjct: 749 EVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNV 790



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 183/397 (46%), Gaps = 43/397 (10%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           ++ T+   L   A  ++L      H+ +L  G +++      LI+ Y+ C +P  ++ VF
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRVF 60

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + I       ++SL+  Y  N     A++ F  M    V  ++F L  + K    + D  
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAR 117

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  +H +++  GF  DV +AN+L++MY                                
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMY-------------------------------- 145

Query: 199 SSGDFSLVVRSRRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
             G F  +  +RRVF++    RN  +W  +++ YV+N    +A+ +F EM +   I+P +
Sbjct: 146 --GGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM-VWSGIQPTE 202

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
                V+  C+    +  G+Q+H   +R   + DV   NAL+DMY K G +D A  +FE 
Sbjct: 203 FGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEK 262

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
              + D ++W++++SG  L+G  H A+ L  +M   G  P++ T+  +L AC  +G  + 
Sbjct: 263 MP-DSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDL 321

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
           G +I+  +I          I   +VDM  +   LD A
Sbjct: 322 GRQIHGFMIKA-NADSDDYIGVGLVDMYAKNHFLDDA 357



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/519 (23%), Positives = 226/519 (43%), Gaps = 80/519 (15%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ-HKDVYLYNSLING 95
           +L  Q H+  ++ G  S+ FV+  L+  Y   G    ++ VFN     ++   +N L++ 
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           YVKN    +A+++F  M +S + P +F  + +       +++  G  +H + +++G+  D
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG------------------- 196
           V  AN+L+ MY+K G+      +F++MP  +V SWN  ISG                   
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 197 ----------------HASSGDFSLVVRSRRVFDQMKRRNV----YAWTAMINGYVQNGD 236
                            + +G F L    R++   M + N     Y    +++ Y +N  
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDL---GRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 353

Query: 237 LDE-------------------------------ALVLFLEMQLKDRIEPNKVSLVSVLP 265
           LD+                               AL LF E++ K+ +  N+ +L +VL 
Sbjct: 354 LDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELR-KEGLGVNRTTLAAVLK 412

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
           + +SL   S  +Q+H  A++     D  + N LID Y KC  L  A RVFE+ S + D I
Sbjct: 413 STASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECS-SGDII 471

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
             +S+++       G  A+ L+ +M+  G +PD   +  +L+AC       +G +++  +
Sbjct: 472 ACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           I    +       A +V    + G ++ A     ++P E     W A++     HG+ + 
Sbjct: 532 IKRQFMSDAFAGNA-LVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKR 589

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484
               +  ++  E  NP N+++++++  +      V E +
Sbjct: 590 ALELFGRMVD-EGINP-NHITMTSVLCACNHAGLVDEAK 626



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 6/234 (2%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           +RRVFD++      +W++++  Y  NG    A+  F  M+  + +  N+ +L  VL  C 
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMR-AEGVCCNEFALPVVL-KCV 113

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
               L  G Q+H  A+      DV + NAL+ MY   G +D ARRVF ++   ++A++W+
Sbjct: 114 PDARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWN 171

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
            ++S Y  + +  +A+ ++ +MV  G +P       V++AC  S  I  G +++  V+  
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRM 231

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
              K      A +VDM  + G++D A    + MP     S W AL+S  V++G+
Sbjct: 232 GYDKDVFTANA-LVDMYMKMGRVDIASVIFEKMPDSDVVS-WNALISGCVLNGH 283



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           S  N LI  YSKC    CARRVF++   +   ++WSS+V+ Y  +G    A+  ++ M  
Sbjct: 38  SFRNHLISFYSKCRRPCCARRVFDEIP-DPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRA 96

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G   +   +  VL     + L   G +++   + T        +   +V M G  G +D
Sbjct: 97  EGVCCNEFALPVVLKCVPDARL---GAQVHAMAMAT-GFGSDVFVANALVAMYGGFGFMD 152

Query: 413 RALDFIKTMPVEPSPSIWGALVSASV 438
            A         E +   W  L+SA V
Sbjct: 153 DARRVFNEADSERNAVSWNGLMSAYV 178


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/502 (32%), Positives = 274/502 (54%), Gaps = 35/502 (6%)

Query: 41  QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
           Q H+ ++  G  S  FV   ++  Y+     + ++ VF+S+++++   +NS+I G+V N 
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNG 273

Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
              EA ELF  M    V       AT+ KL   IK+++    +H   IK G   D+ +  
Sbjct: 274 LDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKT 333

Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
           +LM  Y KC +  +   LF  M              H                     +N
Sbjct: 334 ALMVAYSKCSEIDDAFKLFCMM--------------HGV-------------------QN 360

Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS-LIGLSGGKQI 279
           V +WTA+I+GYVQNG  D A+ LF +M+ ++ +EPN+ +  SVL  C++    +  GKQ 
Sbjct: 361 VVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQF 420

Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           H  +I+   ++ + + +AL+ MY+K G+++ A  VF+    ++D ++W+S++SGY  HG 
Sbjct: 421 HSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFK-RQVDRDLVSWNSMISGYAQHGC 479

Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
           G +++ ++ +M     + D IT +GV+SAC  +GL+NEG   ++ ++  Y I PT E  +
Sbjct: 480 GKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYS 539

Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
           C+VD+  RAG L++A+D I  MP     +IW  L++A  +H N ++ +LA + LI L+P+
Sbjct: 540 CMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQ 599

Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
           + + YV LSN+YA++  W   A++R +M  + +KK  G SWI +  KT  F   D +HP 
Sbjct: 600 DSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQ 659

Query: 520 SVSIYEMLDDLILIMRGAAASP 541
           S  IY  L++L + ++ A   P
Sbjct: 660 SDRIYLKLEELSIRLKDAGYYP 681



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 184/399 (46%), Gaps = 37/399 (9%)

Query: 74  SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
           SQ +F+    + +   N L+  + +N  + EAL LF  +  S    D  +L+ + K+ G 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
           + D  VG  +H   IK GFV DV +  SL+ MY+K     +                   
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVED------------------- 145

Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
                            RVFD+M+ +NV +WT+++ GY QNG  ++AL LF +MQL+  I
Sbjct: 146 ---------------GERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEG-I 189

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           +PN  +  +VL   ++   +  G Q+H   I+  L+  + + N++++MYSK   +  A+ 
Sbjct: 190 KPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKA 249

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           VF DS  N++A++W+S+++G+  +G   EA  L+ +M   G K        V+  C    
Sbjct: 250 VF-DSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIK 308

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            ++   +++  VI          I   ++    +  ++D A      M    +   W A+
Sbjct: 309 EMSFAKQLHCQVIKNGS-DFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAI 367

Query: 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
           +S  V +G ++     +  + + E   P+ +   S L A
Sbjct: 368 ISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNA 406



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 149/335 (44%), Gaps = 47/335 (14%)

Query: 27  LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-KD 85
           +++ A  + +   KQ H Q++  G   +  + T L+ AY+ C +   +  +F  +   ++
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN 360

Query: 86  VYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLATI-SKLSGEIKDLNVGMLI 143
           V  + ++I+GYV+N   + A+ LF  M     V P++FT +++ +  +     +  G   
Sbjct: 361 VVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQF 420

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H  SIK GF   + ++++L++MY K G       +F     R++ SWN  ISG+A  G  
Sbjct: 421 HSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHG-- 478

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
               +S ++F++M+ +N                                +E + ++ + V
Sbjct: 479 -CGKKSLKIFEEMRSKN--------------------------------LELDGITFIGV 505

Query: 264 LPTCSSLIGLSGGKQ-----IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318
           +  C+    ++ G++     +  + I   + H     + ++D+YS+ G L+ A  +    
Sbjct: 506 ISACTHAGLVNEGQRYFDLMVKDYHIVPTMEH----YSCMVDLYSRAGMLEKAMDLINKM 561

Query: 319 SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
            F   A  W ++++   +H       L   K++ L
Sbjct: 562 PFPAGATIWRTLLAACRVHLNVQLGELAAEKLISL 596


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 276/489 (56%), Gaps = 12/489 (2%)

Query: 35  SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ---SQLVFNSIQHKDVYLYNS 91
           +LK  KQ H+Q++  G ++N  +  + + + A+   PT    S  + +      ++  NS
Sbjct: 21  TLKELKQIHTQLVINGLLNNRELLGQFVASIAV-RNPTNLLYSNQILDQCAKPTLFALNS 79

Query: 92  LINGYVKNHGHNEALELFSNMYYSN--VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
           +I  Y K+   +++ + ++ +  SN  +SPD++T   + +   +      G  +HG  IK
Sbjct: 80  MIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-SACEAGPAVHGALIK 138

Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
            GF  D  + + L+ MY +    S C  +F+ + + ++      +S  A  GD      +
Sbjct: 139 HGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGF---A 195

Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
           R +FD M +R+  +W AMI GY Q G   EAL LF  MQ+ D ++ N+VS++SV+  C+ 
Sbjct: 196 RNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQM-DGVKVNEVSMISVVTACTH 254

Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
           L  L  GK  H +  + ++   V+L  AL+DMY KCG++D A +VF + +  K+  TWS+
Sbjct: 255 LGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMN-EKNVYTWST 313

Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
            + G  ++G G + + L++ M   G  P+ IT + VL  C   G ++EG   ++S+   +
Sbjct: 314 AIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDH 373

Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
            I+P  E   C+VD+ GRAG+L+ AL+FI TMP++P    WGAL++A  M+ N E+ + A
Sbjct: 374 GIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFA 433

Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
            + LI++E +N   YVSLSN+YA +  WD V+ +R  MK  G+ K PGCS + ++G+ H 
Sbjct: 434 SRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHE 493

Query: 510 FSVADKAHP 518
           F   DK+HP
Sbjct: 494 FFSGDKSHP 502


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 172/522 (32%), Positives = 275/522 (52%), Gaps = 36/522 (6%)

Query: 22  TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
           T+   L+  +   +  L +Q H  ++     S+ ++   L+  YA       ++ VF+ +
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364

Query: 82  QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
            H+D+ L N+LI+G      H+EAL LF  +    +  +  TLA + K +  ++  +   
Sbjct: 365 FHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTR 424

Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
            +H L++KIGF+ D  + N L+  Y KC   S+   +F+E                 SSG
Sbjct: 425 QVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE----------------CSSG 468

Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
           D                  + A T+MI    Q    + A+ LF+EM L+  +EP+   L 
Sbjct: 469 D------------------IIACTSMITALSQCDHGEGAIKLFMEM-LRKGLEPDPFVLS 509

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           S+L  C+SL     GKQ+H   I+++   D    NAL+  Y+KCGS++ A   F  S   
Sbjct: 510 SLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFS-SLPE 568

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           +  ++WS+++ G   HG G  A+ L+ +MV  G  P+ IT+  VL AC  +GL++E    
Sbjct: 569 RGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRY 628

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           +NS+   + I  T E  +C++D+LGRAG+LD A++ + +MP + + SIWGAL+ AS +H 
Sbjct: 629 FNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHK 688

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           + E+  LA + L  LEPE    +V L+N YAS+  W+ VA++R +MKD  +KK P  SWI
Sbjct: 689 DPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWI 748

Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
            +  K H F V DK+HP +  IY  L +L  +M  A   P++
Sbjct: 749 EVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNV 790



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 182/397 (45%), Gaps = 43/397 (10%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           ++ T+   L   A  ++L      H+ +L  G +++      LI+ Y+ C +P  ++  F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRFF 60

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           + I       ++SL+  Y  N     A++ F  M    V  ++F L  + K    + D  
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAR 117

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  +H +++  GF  DV +AN+L++MY                                
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMY-------------------------------- 145

Query: 199 SSGDFSLVVRSRRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
             G F  +  +RRVF++    RN  +W  +++ YV+N    +A+ +F EM +   I+P +
Sbjct: 146 --GGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM-VWSGIQPTE 202

Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
                V+  C+    +  G+Q+H   +R   + DV   NAL+DMY K G +D A  +FE 
Sbjct: 203 FGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEK 262

Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
              + D ++W++++SG  L+G  H A+ L  +M   G  P++ T+  +L AC  +G  + 
Sbjct: 263 MP-DSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDL 321

Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
           G +I+  +I          I   +VDM  +   LD A
Sbjct: 322 GRQIHGFMIKA-NADSDDYIGVGLVDMYAKNHFLDDA 357



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 118/505 (23%), Positives = 222/505 (43%), Gaps = 80/505 (15%)

Query: 37  KLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ-HKDVYLYNSLING 95
           +L  Q H+  ++ G  S+ FV+  L+  Y   G    ++ VFN     ++   +N L++ 
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 96  YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
           YVKN    +A+++F  M +S + P +F  + +       +++  G  +H + +++G+  D
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG------------------- 196
           V  AN+L+ MY+K G+      +F++MP  +V SWN  ISG                   
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 197 ----------------HASSGDFSLVVRSRRVFDQMKRRNV----YAWTAMINGYVQNGD 236
                            + +G F L    R++   M + N     Y    +++ Y +N  
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDL---GRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 353

Query: 237 LDE-------------------------------ALVLFLEMQLKDRIEPNKVSLVSVLP 265
           LD+                               AL LF E++ K+ +  N+ +L +VL 
Sbjct: 354 LDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELR-KEGLGVNRTTLAAVLK 412

Query: 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAI 325
           + +SL   S  +Q+H  A++     D  + N LID Y KC  L  A RVFE+ S + D I
Sbjct: 413 STASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECS-SGDII 471

Query: 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
             +S+++       G  A+ L+ +M+  G +PD   +  +L+AC       +G +++  +
Sbjct: 472 ACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
           I    +       A +V    + G ++ A     ++P E     W A++     HG+ + 
Sbjct: 532 IKRQFMSDAFAGNA-LVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKR 589

Query: 446 QDLAYKSLIQLEPENPSNYVSLSNL 470
               +  ++  E  NP N+++++++
Sbjct: 590 ALELFGRMVD-EGINP-NHITMTSV 612



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 6/234 (2%)

Query: 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268
           +RR FD++      +W++++  Y  NG    A+  F  M+  + +  N+ +L  VL  C 
Sbjct: 56  ARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMR-AEGVCCNEFALPVVL-KCV 113

Query: 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
               L  G Q+H  A+      DV + NAL+ MY   G +D ARRVF ++   ++A++W+
Sbjct: 114 PDARL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWN 171

Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388
            ++S Y  + +  +A+ ++ +MV  G +P       V++AC  S  I  G +++  V+  
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRM 231

Query: 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
              K      A +VDM  + G++D A    + MP     S W AL+S  V++G+
Sbjct: 232 GYDKDVFTANA-LVDMYMKMGRVDIASVIFEKMPDSDVVS-WNALISGCVLNGH 283



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
           S  N LI  YSKC    CARR F++   +   ++WSS+V+ Y  +G    A+  ++ M  
Sbjct: 38  SFRNHLISFYSKCRRPCCARRFFDEIP-DPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRA 96

Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
            G   +   +  VL     + L   G +++   + T        +   +V M G  G +D
Sbjct: 97  EGVCCNEFALPVVLKCVPDARL---GAQVHAMAMAT-GFGSDVFVANALVAMYGGFGFMD 152

Query: 413 RALDFIKTMPVEPSPSIWGALVSASV 438
            A         E +   W  L+SA V
Sbjct: 153 DARRVFNEADSERNAVSWNGLMSAYV 178


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 170/541 (31%), Positives = 287/541 (53%), Gaps = 69/541 (12%)

Query: 41  QSHSQILSLGHISNPFVSTKLI-TAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           Q H+Q+++   IS+ F +++L+ +  +       ++LVF  I   + ++ N+++  Y ++
Sbjct: 29  QIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTES 88

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
                AL  ++ M    +  D++T   + K  G +  L  G L+ G ++K GF  DV + 
Sbjct: 89  STPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVV 148

Query: 160 NSLMSMYVKCGK----------FSE---------------------CLNLFDEMPQRNVG 188
           N L+SMY +CG+          FSE                       N+FDEMP+R+V 
Sbjct: 149 NGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVV 208

Query: 189 SW--------------------------------NVRISGHASSGDFSLVVRSRRVFDQM 216
           SW                                N  I G+A  G+  +   +R +FD+M
Sbjct: 209 SWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEV---AREIFDKM 265

Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
            ++NV +W+ MI+GY Q+ D  EAL LF +M L   I+P++VS+V  +  CS L  L  G
Sbjct: 266 LQKNVISWSIMIDGYAQHRDSKEALNLFRQM-LCQGIKPDRVSVVGAVSACSQLGALDQG 324

Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
           + IH +  R  +  D+ +  AL+DMY KCGS D ARR+F +S   ++ ++W+ ++ G G+
Sbjct: 325 RWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIF-NSMPERNVVSWNVMIVGLGM 383

Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
           +G G EA+  + +M       D +  +GVL AC  + L+ EGL I+N +   YR++P  E
Sbjct: 384 NGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLE 443

Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
              C+VD+LGRAGQLD+  + I++MP++P+ ++WG+L+ A  +H N  + ++  + L +L
Sbjct: 444 HYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAEL 503

Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
           + ++   YV +SN+YA    W+ +  +R +MK+R +KK  G S I + G    F   +K+
Sbjct: 504 KADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNVEEFVSGEKS 563

Query: 517 H 517
           H
Sbjct: 564 H 564


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 168/505 (33%), Positives = 262/505 (51%), Gaps = 39/505 (7%)

Query: 34   RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
            R+ +  KQ H   +  G  SN  V + LI  Y+  G    S+ +F  +    +   N+LI
Sbjct: 541  RATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALI 600

Query: 94   NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN--VGMLIHGLSIKIG 151
             G+V+N+  +EA++LF  +    + P   T ++I  LSG    LN  +G  +H  ++K G
Sbjct: 601  AGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSI--LSGCSGSLNSAIGKQVHCYTLKSG 658

Query: 152  FVVD-VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
             + D  +L  SL  +Y+K     +   L  EMP                           
Sbjct: 659  VLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDH------------------------- 693

Query: 211  RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
                    +N++ WTA+I+GY QNG  D +LV F  M+  + +  ++ +  SVL  CS +
Sbjct: 694  --------KNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCN-VRSDEATFASVLKACSDV 744

Query: 271  IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
               + GK+IHG   +       +  +ALIDMYSKCG +  +   F++    +D + W+S+
Sbjct: 745  TAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSM 804

Query: 331  VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
            + G+  +G   EA+LL+ KM  L  KPD +T +GVL AC  SGLI+EG   + S+   Y 
Sbjct: 805  IVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYG 864

Query: 391  IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
            + P  +  AC +D+LGR G L  A + I  +P  P   +W   ++A  MH + E   +A 
Sbjct: 865  LTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAA 924

Query: 451  KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510
            + L++LEP+  S YV LS+L+A++  W      R  M+++G+ K PGCSWI++  KT  F
Sbjct: 925  RKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSLF 984

Query: 511  SVADKAHPCSVSIYEMLDDLILIMR 535
             V DK HP ++ IYEML DL  +M+
Sbjct: 985  LVQDKYHPDNLRIYEMLGDLTGMMK 1009



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 203/427 (47%), Gaps = 44/427 (10%)

Query: 19  TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
           T +T    L  +A  ++    +Q H+  +  G  +N FV + LI  YA CG P+ ++ VF
Sbjct: 324 TRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVF 383

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
           +    K++ ++N+++ G+V+N    EA+ +F  M    +  D+FT  +I      +    
Sbjct: 384 DLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFY 443

Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
           +G  +H ++IK    + + +AN+ + MY K G   +   LF  +P ++  SWN       
Sbjct: 444 LGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWN------- 496

Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
                                      A+  G  QN + +EA+ +   M+L   I P+ V
Sbjct: 497 ---------------------------ALTVGLAQNLEEEEAVCMLKRMRLHG-ITPDDV 528

Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE-- 316
           S  + +  CS++     GKQIH  AI+  +  + ++ ++LID+YSK G ++ +R++F   
Sbjct: 529 SFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQV 588

Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
           D+S     +  +++++G+  +    EA+ L+ +++  G KP  +T   +LS C  SG +N
Sbjct: 589 DAS---SIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGC--SGSLN 643

Query: 377 E--GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
              G +++   + +  +   T +   +  +  ++  L+ A   +  MP   +   W A++
Sbjct: 644 SAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAII 703

Query: 435 SASVMHG 441
           S    +G
Sbjct: 704 SGYAQNG 710



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 170/369 (46%), Gaps = 37/369 (10%)

Query: 44  SQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHN 103
           S++  +G   +      +I+  A  G+   +  +   +       +N++I+G+ ++    
Sbjct: 248 SRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEF 307

Query: 104 EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163
             L L+ +M    + P   T A++   +  +K    G  +H  ++  G   +V + +SL+
Sbjct: 308 NVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLI 367

Query: 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYA 223
           ++Y KCG  S+  N+FD   ++N+  WN                                
Sbjct: 368 NLYAKCGCPSDAKNVFDLSCEKNIVMWN-------------------------------- 395

Query: 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA 283
             AM+ G+VQN   +EA+ +F  M ++  ++ ++ + VS+L  C+ L     GKQ+H   
Sbjct: 396 --AMLTGFVQNELPEEAIRMFQYM-MRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVT 452

Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEA 343
           I+  ++  + + NA +DMYSK G++  A+ +F    + KD+I+W+++  G   + +  EA
Sbjct: 453 IKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPY-KDSISWNALTVGLAQNLEEEEA 511

Query: 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403
           V +  +M   G  PD ++    ++AC        G +I+   I  Y I     + + ++D
Sbjct: 512 VCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIK-YGICSNHAVGSSLID 570

Query: 404 MLGRAGQLD 412
           +  + G ++
Sbjct: 571 LYSKHGDVE 579



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 151/348 (43%), Gaps = 36/348 (10%)

Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
           PD F LA +      +  L  G  +H   +K GF   V    +L+ MY KCG       +
Sbjct: 156 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRV 215

Query: 179 FDEMPQRNVGSWNVRISGHASSGDF--SLVVRSR-------------------------- 210
           FD +   +   W+  I+ +   G +  +L + SR                          
Sbjct: 216 FDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRL 275

Query: 211 ----RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
                +  +M   +  AW A+I+G+ Q+G     L L+ +M+    + P + +  S+L  
Sbjct: 276 DHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWG-LWPTRSTFASMLSA 334

Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT 326
            +++     G+Q+H  A+   L+ +V + ++LI++Y+KCG    A+ VF D S  K+ + 
Sbjct: 335 AANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVF-DLSCEKNIVM 393

Query: 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386
           W+++++G+  +    EA+ ++  M+    + D  T V +L AC        G +++   I
Sbjct: 394 WNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTI 453

Query: 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
               +  +  +    +DM  + G +  A      +P + S S W AL 
Sbjct: 454 KNC-MDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSIS-WNALT 499



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 127/272 (46%), Gaps = 24/272 (8%)

Query: 219 RNVYAWTAM--------------INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
           R  YAW+A+              ++ + ++G   + L  F  ++      P++  L  VL
Sbjct: 106 RVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVL 165

Query: 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324
             CS +  L+ G+Q+H   ++   +  V    AL+DMY+KCG +  ARRVF D     D 
Sbjct: 166 SACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVF-DGIACPDT 224

Query: 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384
           I WSS+++ Y   G   EA+ L+++M  +GS PD +T+V ++S    SG ++    +   
Sbjct: 225 ICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKK 284

Query: 385 VINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM---PVEPSPSIWGALVSASV-MH 440
           +       P+T     V+    ++G     L   K M    + P+ S + +++SA+  M 
Sbjct: 285 MPT-----PSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMK 339

Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472
              E Q +   +++     N     SL NLYA
Sbjct: 340 AFVEGQQMHAAAVMHGLDANVFVGSSLINLYA 371


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 166/508 (32%), Positives = 266/508 (52%), Gaps = 36/508 (7%)

Query: 34  RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
            +  + K  H   L   +  + FV   L+  YA  G+   +Q +F  +   D+  ++ +I
Sbjct: 251 EAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMI 310

Query: 94  NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
             Y ++    EAL+LF  M  ++V P++FT A++ +       L++G  IH   +K G  
Sbjct: 311 ARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLN 370

Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
            +V ++N++M +Y KCG+    + LF+E+P                              
Sbjct: 371 SNVFVSNAIMDVYAKCGEIENSMKLFEELPD----------------------------- 401

Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
                RN   W  +I GYVQ GD + A+ LF  M L+  ++P +V+  SVL   +SL  L
Sbjct: 402 -----RNDVTWNTIIVGYVQLGDGERAMNLFTHM-LEHDMQPTEVTYSSVLRASASLAAL 455

Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
             G QIH   I+   N D  + N+LIDMY+KCG ++ AR  F D    +D ++W++++ G
Sbjct: 456 EPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTF-DKMNKRDEVSWNAMICG 514

Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
           Y +HG   EA+ L++ M     KP+ +T VGVLSAC  +GL+ +G   + S+   Y IKP
Sbjct: 515 YSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKP 574

Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
             E   C+V +LGR G+ D A+  I  +  +PS  +W AL+ A V+H   ++  +  + +
Sbjct: 575 CIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHV 634

Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
           +++EP + + +V LSN+YA++ RWD VA +R  M+ + ++K PG SW+   G  H FSV 
Sbjct: 635 LEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVG 694

Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASP 541
           D +HP    I  ML+ L    R A   P
Sbjct: 695 DTSHPDIKLICAMLEWLNKKTRDAGYVP 722



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 45/331 (13%)

Query: 13  VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
           V   N+T A+V   LQ  A+  SL L KQ HS +L  G  SN FVS  ++  YA CG+  
Sbjct: 334 VVPNNFTFASV---LQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIE 390

Query: 73  QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
            S  +F  +  ++   +N++I GYV+      A+ LF++M   ++ P + T +++ + S 
Sbjct: 391 NSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASA 450

Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV 192
            +  L  G+ IH L+IK  +  D ++ANSL+ MY KCG+ ++    FD+M +R+  SWN 
Sbjct: 451 SLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWN- 509

Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
                                            AMI GY  +G   EAL LF  MQ  D 
Sbjct: 510 ---------------------------------AMICGYSMHGMSMEALNLFDMMQHTD- 535

Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC----NALIDMYSKCGSL 308
            +PNK++ V VL  CS+  GL    Q H  ++ K+  +D+  C      ++ +  + G  
Sbjct: 536 CKPNKLTFVGVLSACSN-AGLLYKGQAHFESMSKD--YDIKPCIEHYTCMVWLLGRLGRF 592

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
           D A ++  + ++    + W +++    +H K
Sbjct: 593 DEAMKLIGEIAYQPSVMVWRALLGACVIHKK 623



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/526 (22%), Positives = 217/526 (41%), Gaps = 79/526 (15%)

Query: 40  KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99
           K  H  IL  G   + F    L+  Y        +  +F+ +   +   + +L  GY ++
Sbjct: 55  KHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRD 114

Query: 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILA 159
           H  ++AL     ++      + F   T+ KL   +   ++   +H    K+G   D  + 
Sbjct: 115 HQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVG 174

Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK-- 217
            +L+  Y   G      ++FD++  +++ SW   ++ +A +  +     S ++F+QM+  
Sbjct: 175 TALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYE---ESLQLFNQMRIM 231

Query: 218 -------------------------------------RRNVYAWTAMINGYVQNGDLDEA 240
                                                  +++   A++  Y ++G++ +A
Sbjct: 232 GYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDA 291

Query: 241 LVLFLEMQLKDRIE------------------------------PNKVSLVSVLPTCSSL 270
             LF EM   D I                               PN  +  SVL  C+S 
Sbjct: 292 QRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASS 351

Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
           + L  GKQIH   ++  LN +V + NA++D+Y+KCG ++ + ++FE+   +++ +TW++I
Sbjct: 352 VSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP-DRNDVTWNTI 410

Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
           + GY   G G  A+ L+  M+    +P  +T   VL A      +  GL+I++  I T  
Sbjct: 411 IVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMY 470

Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
            K T  +   ++DM  + G+++ A      M      S W A++    MHG S M+ L  
Sbjct: 471 NKDTV-VANSLIDMYAKCGRINDARLTFDKMNKRDEVS-WNAMICGYSMHGMS-MEALNL 527

Query: 451 KSLIQLEPENPSNYVSLSNLYASSRR---WDAVAELRTMMKDRGLK 493
             ++Q     P+    +  L A S     +   A   +M KD  +K
Sbjct: 528 FDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIK 573



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 156/371 (42%), Gaps = 69/371 (18%)

Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
           G  +H   +K G  +D+   N L++ YV+     +   LFDEMPQ N  S+     G++ 
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 200 SGDFSLVVRS-RRVFDQMKRRNVYAW---------------------------------- 224
              F   +    R+F +    N + +                                  
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 225 -TAMINGYVQNGDLDEALVLFLEMQLKDRI------------------------------ 253
            TA+I+ Y   G++D A  +F ++  KD +                              
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
           +PN  ++   L +C  L   + GK +HG A++   +HD+ +  AL+++Y+K G +  A+R
Sbjct: 234 KPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQR 293

Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373
           +FE+     D I WS +++ Y    +  EA+ L+ +M      P+  T   VL AC  S 
Sbjct: 294 LFEEMP-KTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSV 352

Query: 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433
            ++ G +I++ V+  + +     +   ++D+  + G+++ ++   + +P + +   W  +
Sbjct: 353 SLDLGKQIHSCVLK-FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP-DRNDVTWNTI 410

Query: 434 VSASVMHGNSE 444
           +   V  G+ E
Sbjct: 411 IVGYVQLGDGE 421


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 171/522 (32%), Positives = 278/522 (53%), Gaps = 10/522 (1%)

Query: 25  HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
           H LQ+ A  +S     + HSQI+  G   +  +S  L+  Y  CG   Q+  +F+ + ++
Sbjct: 8   HQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNR 67

Query: 85  DVYLYNSLINGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLI 143
           D   + S++  + K       L + + M+ +  + PD F  A I +    +  L +G  +
Sbjct: 68  DHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQV 127

Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
           H   +   F  D ++ +SL+ MY KCG+  E   +FD +  +N  SW   ISG+A SG  
Sbjct: 128 HARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGR- 186

Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK--DRIEPNKVSLV 261
                +  +F Q   RN+++WTA+I+G +Q+G    +  LF EM+ +  D ++P  + L 
Sbjct: 187 --KCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDP--LVLS 242

Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
           SV+  C++L  L  GKQIHG  I       + + NAL+DMY+KC  +  A+ +F      
Sbjct: 243 SVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP-R 301

Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
           KD I+W+SI+ G   HGK  EA+ LY++MV    KP+ +T VG+L AC  +GL++ G E+
Sbjct: 302 KDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGREL 361

Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
           + S+   Y I P+ +   C++D+L R+G LD A + +  +P +P    W +L+SA + H 
Sbjct: 362 FRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHN 421

Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
           N EM       ++ L+PE+PS Y+ LSN+YA +  W +V+++R +M    ++K PG S I
Sbjct: 422 NLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSI 481

Query: 502 SIHGKTHCFSVADKA-HPCSVSIYEMLDDLILIMRGAAASPH 542
                +  F   +   HP    I  +L DL   MR     P+
Sbjct: 482 DFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPN 523


>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
 gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
          Length = 563

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 168/528 (31%), Positives = 280/528 (53%), Gaps = 25/528 (4%)

Query: 24  QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLI-----TAYALCGQPTQSQLVF 78
           Q F+       +L   KQ    ++S GH    F + KL+     T   LC     ++ +F
Sbjct: 44  QLFVAALEKCSNLNHLKQLQGFLISHGHSQTQFFAFKLVRFCNLTLADLC----YARYIF 99

Query: 79  NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDL 137
           +++   +V+LY ++I  Y        A  L+ NM     + P++F    + +   ++   
Sbjct: 100 DNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVLGS 159

Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVK-CGKFSECLNLFDEMPQRNVGSWNVRISG 196
           N   ++H   +K GF    ++  +++  Y +          +FDEM +R V SW   ISG
Sbjct: 160 NATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSWTAMISG 219

Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQL------- 249
           +A  G+F   +    +F+ M  R+V AW A+I G  QNG   EA+ LF  M L       
Sbjct: 220 YARLGNFDSAIE---LFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNN 276

Query: 250 KDRI-EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308
            DR  +PNK +L S L  C     L  GK IHG+  +     D  + NAL+DMY KCG+L
Sbjct: 277 NDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKCGNL 336

Query: 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS--KPDIITIVGVL 366
             ARRVF+  +  K+  +W+S+++   LHG    A+ L+ +++  G   KP+ +T VGVL
Sbjct: 337 KVARRVFDMITL-KNLTSWNSLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFVGVL 395

Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
           +AC   GL+ +G   +  +   Y I+P  E   C++D+LGRAG+ + A++ ++ M +EP 
Sbjct: 396 NACTHGGLVEKGYSYFEMMRRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGMNIEPD 455

Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486
             +WG+L++A  +HG S++ + + K LI+++P+N    + L+N+YA   +WD V ++R +
Sbjct: 456 EVVWGSLLNACKIHGRSDLAEYSVKKLIEMDPKNGGYRIMLANIYAEFGKWDEVRKVRRL 515

Query: 487 MKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
           +K++   K+PGCSWI +  + + F   D +HP    IY+ L+ +I  M
Sbjct: 516 LKEKNAYKTPGCSWIEVDNQVYQFYSFDMSHPSVEEIYKTLESMISFM 563


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,202,183,626
Number of Sequences: 23463169
Number of extensions: 331385121
Number of successful extensions: 1047730
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7829
Number of HSP's successfully gapped in prelim test: 3098
Number of HSP's that attempted gapping in prelim test: 868228
Number of HSP's gapped (non-prelim): 56056
length of query: 547
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 399
effective length of database: 8,886,646,355
effective search space: 3545771895645
effective search space used: 3545771895645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)