BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044812
(547 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 161 SLMSMYVKCGKFSECLNLFD---EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
+L + Y K G + E + + E+ R+ +W + + GD+ + + ++
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 218 RRNVYAWTAMINGYVQNGDLDEAL 241
R+ AW + N Y + GD DEA+
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAI 89
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 161 SLMSMYVKCGKFSECLNLFD---EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
+L + Y K G + E + + E+ R+ +W + + GD+ + + ++
Sbjct: 40 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Query: 218 RRNVYAWTAMINGYVQNGDLDEAL 241
R+ AW + N Y + GD DEA+
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAI 123
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 407 RAGQLDRALDFI-KTMPVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
+ G D A+++ K + ++P S W L +A G+ + Y+ ++L+P + +
Sbjct: 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 72
Query: 465 VSLSNLYASSRRWDAVAE 482
+L N Y +D E
Sbjct: 73 YNLGNAYYKQGDYDEAIE 90
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 407 RAGQLDRALDFI-KTMPVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
+ G D A+++ K + ++P S W L +A G+ + Y+ ++L+P + +
Sbjct: 47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
Query: 465 VSLSNLYASSRRWDAVAE 482
+L N Y +D E
Sbjct: 107 YNLGNAYYKQGDYDEAIE 124
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 36.2 bits (82), Expect = 0.048, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 161 SLMSMYVKCGKFSECLNLFD---EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
+L + Y K G + E + + E+ N +W + + GD+ + + ++
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
N AW + N Y + GD DEA+ + Q ++PN
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYY---QKALELDPN 109
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
P + +W + + GD+ + + ++ N AW + N Y + GD DEA+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 243 LFLEMQLKDRIEPN 256
+ Q ++PN
Sbjct: 65 YY---QKALELDPN 75
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 407 RAGQLDRALDFI-KTMPVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
+ G D A+++ K + ++P+ + W L +A G+ + Y+ ++L+P N +
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80
Query: 465 VSLSNLYASSRRWDAVAE 482
+L N Y +D E
Sbjct: 81 YNLGNAYYKQGDYDEAIE 98
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 161 SLMSMYVKCGKFSECLNLFD---EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
+L + Y K G + E + + E+ N +W + + GD+ + + ++
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY 73
Query: 218 RRNVYAWTAMINGYVQNGDLDEAL 241
N AW + N Y + GD DEA+
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAI 97
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
P + +W + + GD+ + + ++ N AW + N Y + GD DEA+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
P + +W + + GD+ + + ++ N AW + N Y + GD DEA+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 243 LFLEMQLKDRIEPN 256
+ Q ++PN
Sbjct: 65 YY---QKALELDPN 75
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 161 SLMSMYVKCGKFSECLNLFD---EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
+L + Y K G + + + + E+ N +W + + GD+ + + ++
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELD 73
Query: 218 RRNVYAWTAMINGYVQNGDLDEAL 241
N AW N Y + GD +A+
Sbjct: 74 PNNAKAWYRRGNAYYKQGDYQKAI 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,538,986
Number of Sequences: 62578
Number of extensions: 625252
Number of successful extensions: 1336
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1312
Number of HSP's gapped (non-prelim): 23
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)