BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044812
(547 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 357 bits (915), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 184/525 (35%), Positives = 301/525 (57%), Gaps = 4/525 (0%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T ++ +A SL L + H + S+ FV+ LI Y CG + VF +I
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 82 QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
+ KDV +NS+ING+V+ ++ALELF M +V T+ + +I++L G
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
+ + V++ LAN+++ MY KCG + LFD M +++ +W + G+A S
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
D+ +R V + M ++++ AW A+I+ Y QNG +EAL++F E+QL+ ++ N+++LV
Sbjct: 313 DYEA---AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369
Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
S L C+ + L G+ IH + + + + + +ALI MYSKCG L+ +R VF +S
Sbjct: 370 STLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF-NSVEK 428
Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
+D WS+++ G +HG G+EAV ++ KM KP+ +T V AC +GL++E +
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 488
Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
++ + + Y I P + AC+VD+LGR+G L++A+ FI+ MP+ PS S+WGAL+ A +H
Sbjct: 489 FHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 548
Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
N + ++A L++LEP N +V LSN+YA +W+ V+ELR M+ GLKK PGCS I
Sbjct: 549 NLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSI 608
Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546
I G H F D AHP S +Y L +++ ++ P + ++
Sbjct: 609 EIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQV 653
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/488 (25%), Positives = 235/488 (48%), Gaps = 75/488 (15%)
Query: 35 SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT--QSQLVFNSIQHKDVYLYNSL 92
SL+ KQ+H ++ G S+P+ ++KL AL + ++ VF+ I + + +N+L
Sbjct: 42 SLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTL 101
Query: 93 INGYVKNHGHNEALELFSNMY-YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
I Y ++ F +M S P+ +T + K + E+ L++G +HG+++K
Sbjct: 102 IRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA 161
Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
DV +ANSL+ Y CG +F + +++V SWN
Sbjct: 162 VGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWN-------------------- 201
Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
+MING+VQ G D+AL LF +M+ +D ++ + V++V VL C+ +
Sbjct: 202 --------------SMINGFVQKGSPDKALELFKKMESED-VKASHVTMVGVLSACAKIR 246
Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE--------------- 316
L G+Q+ + +N +++L NA++DMY+KCGS++ A+R+F+
Sbjct: 247 NLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLD 306
Query: 317 ---------------DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDII 360
+S KD + W++++S Y +GK +EA+++++++ + K + I
Sbjct: 307 GYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQI 366
Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
T+V LSAC + G + G I+ S I + I+ + + ++ M + G L+++ + +
Sbjct: 367 TLVSTLSACAQVGALELGRWIH-SYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 425
Query: 421 MPVEPSPSIWGALVSASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479
+ + +W A++ MHG +E D+ YK E N V+ +N++ +
Sbjct: 426 VE-KRDVFVWSAMIGGLAMHGCGNEAVDMFYK---MQEANVKPNGVTFTNVFCACSHTGL 481
Query: 480 VAELRTMM 487
V E ++
Sbjct: 482 VDEAESLF 489
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/426 (18%), Positives = 159/426 (37%), Gaps = 109/426 (25%)
Query: 3 LSSARNTFALVTSRNYTS--ATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS------- 53
L SA F + ++ S + + F+Q + ++L+L K+ S+ + H++
Sbjct: 182 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 241
Query: 54 ------------------------NPFVSTKLITAYALCGQPTQSQLVF----------- 78
N ++ ++ Y CG ++ +F
Sbjct: 242 CAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTW 301
Query: 79 --------------------NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NV 117
NS+ KD+ +N+LI+ Y +N NEAL +F + N+
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNM 361
Query: 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177
+ TL + ++ L +G IH K G ++ + ++L+ MY KCG +
Sbjct: 362 KLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSRE 421
Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
+F+ + +R+V + W+AMI G +G
Sbjct: 422 VFNSVEKRDV----------------------------------FVWSAMIGGLAMHGCG 447
Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH-----GFAIRKELNHDV 292
+EA+ +F +MQ + ++PN V+ +V CS + + + + I E H
Sbjct: 448 NEAVDMFYKMQ-EANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506
Query: 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
++D+ + G L+ A + E W +++ +H + A + +++
Sbjct: 507 ----CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLE 562
Query: 353 LGSKPD 358
L + D
Sbjct: 563 LEPRND 568
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 351 bits (900), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 185/514 (35%), Positives = 291/514 (56%), Gaps = 12/514 (2%)
Query: 41 QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
Q HS I +S+ ++ + L+ Y+ CG +Q VF+ + ++V +NSLI + +N
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNG 232
Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILA 159
EAL++F M S V PD+ TLA++ + + VG +HG +K + D+IL+
Sbjct: 233 PAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILS 292
Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
N+ + MY KC + E +FD MP RNV + ISG+A + +R +F +M R
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAAS---TKAARLMFTKMAER 349
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
NV +W A+I GY QNG+ +EAL LF ++ ++ + P S ++L C+ L L G Q
Sbjct: 350 NVVSWNALIAGYTQNGENEEALSLFCLLK-RESVCPTHYSFANILKACADLAELHLGMQA 408
Query: 280 H------GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
H GF + D+ + N+LIDMY KCG ++ VF +D ++W++++ G
Sbjct: 409 HVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFR-KMMERDCVSWNAMIIG 467
Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
+ +G G+EA+ L+ +M+ G KPD IT++GVLSACG +G + EG ++S+ + + P
Sbjct: 468 FAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAP 527
Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
+ C+VD+LGRAG L+ A I+ MP++P IWG+L++A +H N + + L
Sbjct: 528 LRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKL 587
Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
+++EP N YV LSN+YA +W+ V +R M+ G+ K PGCSWI I G H F V
Sbjct: 588 LEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVK 647
Query: 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHLGKMT 547
DK+HP I+ +LD LI MR +G ++
Sbjct: 648 DKSHPRKKQIHSLLDILIAEMRPEQDHTEIGSLS 681
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 151/281 (53%), Gaps = 5/281 (1%)
Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
+H IK GF ++ + N L+ Y KCG + +FD+MPQRN+ +WN ++G G
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLG- 100
Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
+ + +F M R+ W +M++G+ Q+ +EAL F M K+ N+ S S
Sbjct: 101 --FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMH-KEGFVLNEYSFAS 157
Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
VL CS L ++ G Q+H + DV + +AL+DMYSKCG+++ A+RVF D ++
Sbjct: 158 VLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVF-DEMGDR 216
Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
+ ++W+S+++ + +G EA+ ++ M+ +PD +T+ V+SAC I G E++
Sbjct: 217 NVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVH 276
Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
V+ +++ + VDM + ++ A +MP+
Sbjct: 277 GRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 184/373 (49%), Gaps = 74/373 (19%)
Query: 43 HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
H+ ++ G + F+ +LI AY+ CG + VF+ + +++Y +NS++ G K
Sbjct: 43 HASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFL 102
Query: 103 NEALELFSNM--------------------------YYSNVSPDDFTL------ATISKL 130
+EA LF +M Y++ + + F L + +S
Sbjct: 103 DEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSAC 162
Query: 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSW 190
SG + D+N G+ +H L K F+ DV + ++L+ MY KCG ++ +FDEM RNV SW
Sbjct: 163 SG-LNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221
Query: 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250
N ++I + QNG EAL +F +M L+
Sbjct: 222 N----------------------------------SLITCFEQNGPAVEALDVF-QMMLE 246
Query: 251 DRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLD 309
R+EP++V+L SV+ C+SL + G+++HG ++ + L +D+ L NA +DMY+KC +
Sbjct: 247 SRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIK 306
Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
AR +F DS ++ I +S++SGY + A L++ KM ++ ++++ +++
Sbjct: 307 EARFIF-DSMPIRNVIAETSMISGYAMAASTKAARLMFTKM----AERNVVSWNALIAGY 361
Query: 370 GRSGLINEGLEIY 382
++G E L ++
Sbjct: 362 TQNGENEEALSLF 374
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 32/195 (16%)
Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE-------------------- 316
+ +H I+ ++++ + N LID YSKCGSL+ R+VF+
Sbjct: 40 RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99
Query: 317 ------DSSF----NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366
DS F +D TW+S+VSG+ H + EA+ + M G + + VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159
Query: 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS 426
SAC +N+G++++ S+I I + +VDM + G ++ A M
Sbjct: 160 SACSGLNDMNKGVQVH-SLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNV 218
Query: 427 PSIWGALVSASVMHG 441
S W +L++ +G
Sbjct: 219 VS-WNSLITCFEQNG 232
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 193/558 (34%), Positives = 304/558 (54%), Gaps = 74/558 (13%)
Query: 30 SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
SATH++ KQ H+++L LG + F+ TKLI A + G T ++ VF+ + ++ +
Sbjct: 30 SATHKAQ--LKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPW 87
Query: 90 NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
N++I GY +N+ +AL ++SNM + VSPD FT + K + L +G +H +
Sbjct: 88 NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147
Query: 150 IGFVVDVILANSLMSMYVKC---------------------------------GKFSECL 176
+GF DV + N L+++Y KC G+ E L
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207
Query: 177 NLFDEMPQRNVG-SWNVRISG----------------HASSGDFSL-------------- 205
+F +M + +V W +S HAS L
Sbjct: 208 EIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267
Query: 206 -----VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
V ++ +FD+MK N+ W AMI+GY +NG EA+ +F EM KD + P+ +S+
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD-VRPDTISI 326
Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
S + C+ + L + ++ + R + DV + +ALIDM++KCGS++ AR VF D +
Sbjct: 327 TSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVF-DRTL 385
Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
++D + WS+++ GYGLHG+ EA+ LY M G P+ +T +G+L AC SG++ EG
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445
Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
+N + + ++I P + ACV+D+LGRAG LD+A + IK MPV+P ++WGAL+SA H
Sbjct: 446 FFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504
Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
+ E+ + A + L ++P N +YV LSNLYA++R WD VAE+R MK++GL K GCSW
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564
Query: 501 ISIHGKTHCFSVADKAHP 518
+ + G+ F V DK+HP
Sbjct: 565 VEVRGRLEAFRVGDKSHP 582
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 348 bits (894), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 197/548 (35%), Positives = 303/548 (55%), Gaps = 36/548 (6%)
Query: 28 QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
QV T+ ++ + HS+I+ N + KL+ AYA ++ VF+ I ++V
Sbjct: 47 QVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 106
Query: 88 LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
+ N +I YV N + E +++F M NV PD +T + K + +G IHG +
Sbjct: 107 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 166
Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF---- 203
K+G + + N L+SMY KCG SE + DEM +R+V SWN + G+A + F
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226
Query: 204 -------------------SL-----------VVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
SL V+ + +F +M ++++ +W MI Y++
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286
Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
N EA+ L+ M+ D EP+ VS+ SVLP C LS GK+IHG+ RK+L ++
Sbjct: 287 NAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 345
Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
L NALIDMY+KCG L+ AR VFE+ ++D ++W++++S YG G+G +AV L++K+
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMK-SRDVVSWTAMISAYGFSGRGCDAVALFSKLQDS 404
Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
G PD I V L+AC +GL+ EG + + + Y+I P E AC+VD+LGRAG++
Sbjct: 405 GLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKE 464
Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
A FI+ M +EP+ +WGAL+ A +H ++++ LA L QL PE YV LSN+YA
Sbjct: 465 AYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAK 524
Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
+ RW+ V +R +MK +GLKK+PG S + ++ H F V D++HP S IY LD L+
Sbjct: 525 AGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKK 584
Query: 534 MRGAAASP 541
M+ P
Sbjct: 585 MKELGYVP 592
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 157/371 (42%), Gaps = 48/371 (12%)
Query: 27 LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
L+ + ++ + ++ H +G S FV L++ Y CG ++++LV + + +DV
Sbjct: 147 LKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDV 206
Query: 87 YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
+NSL+ GY +N ++ALE+ M +S D T+A++ NV M + +
Sbjct: 207 VSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV-MYVKDM 265
Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG-HASSGDFS- 204
K+G ++ N ++ +Y+K E + L+ M V I+ + GD S
Sbjct: 266 FFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSA 324
Query: 205 ----------------------------------LVVRSRRVFDQMKRRNVYAWTAMING 230
+ ++R VF+ MK R+V +WTAMI+
Sbjct: 325 LSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISA 384
Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FAIR 285
Y +G +A+ LF ++Q + P+ ++ V+ L CS L G+ + I
Sbjct: 385 YGFSGRGCDAVALFSKLQ-DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKIT 443
Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
L H ++D+ + G + A R +D S + W +++ +H +L
Sbjct: 444 PRLEH----LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499
Query: 346 LYNKMVCLGSK 356
+K+ L +
Sbjct: 500 AADKLFQLAPE 510
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 166/460 (36%), Positives = 272/460 (59%), Gaps = 4/460 (0%)
Query: 77 VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
+F+ Q+ +LYN LI Y +H +E++ L++ + + + P T I S
Sbjct: 38 LFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSS 97
Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
L+H + GF D +L++ Y K G +FDEM +R+V WN I+G
Sbjct: 98 ARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITG 157
Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
+ GD + +FD M R+NV +WT +I+G+ QNG+ EAL +FL M+ ++PN
Sbjct: 158 YQRRGDMKAAME---LFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPN 214
Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
+++VSVLP C++L L G+++ G+A ++ +CNA I+MYSKCG +D A+R+FE
Sbjct: 215 HITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFE 274
Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
+ ++ +W+S++ HGK EA+ L+ +M+ G KPD +T VG+L AC G++
Sbjct: 275 ELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVV 334
Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
+G E++ S+ ++I P E C++D+LGR G+L A D IKTMP++P +WG L+ A
Sbjct: 335 KGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGA 394
Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
HGN E+ ++A ++L +LEP NP N V +SN+YA++ +WD V +R +MK + K+
Sbjct: 395 CSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAA 454
Query: 497 GCSW-ISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
G S+ + + H F+V DK+HP S IY++L+++ M+
Sbjct: 455 GYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMK 494
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 142/344 (41%), Gaps = 82/344 (23%)
Query: 34 RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
R L+L HSQ G S+ F T LITAYA G ++ VF+ + +DV ++N++I
Sbjct: 99 RPLRLL---HSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMI 155
Query: 94 NGYVKNHGHNEALELFSNMYYSNVS--------------------------------PDD 121
GY + A+ELF +M NV+ P+
Sbjct: 156 TGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNH 215
Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
T+ ++ + +L +G + G + + GF ++ + N+ + MY KCG LF+E
Sbjct: 216 ITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEE 275
Query: 182 MP-QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
+ QRN+ SWN +MI +G DEA
Sbjct: 276 LGNQRNLCSWN----------------------------------SMIGSLATHGKHDEA 301
Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN--HDVSL---- 294
L LF +M L++ +P+ V+ V +L C + GG + G + K + H +S
Sbjct: 302 LTLFAQM-LREGEKPDAVTFVGLLLAC-----VHGGMVVKGQELFKSMEEVHKISPKLEH 355
Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
+ID+ + G L A + + DA+ W +++ HG
Sbjct: 356 YGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHG 399
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 185/563 (32%), Positives = 305/563 (54%), Gaps = 44/563 (7%)
Query: 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
S + + +V A + K+ KQ H G + FV + Y CG+ ++ VF+
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175
Query: 80 SIQHKDVYL-----------------------------------YNSLINGYVKNHGHNE 104
+ KDV +N +++G+ ++ H E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235
Query: 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164
A+ +F +++ PD T++++ G+ + LN+G LIHG IK G + D + ++++
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295
Query: 165 MYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----N 220
MY K G ++LF++ G N I+G + +G LV ++ +F+ K + N
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG---LVDKALEMFELFKEQTMELN 352
Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
V +WT++I G QNG EAL LF EMQ+ ++PN V++ S+LP C ++ L G+ H
Sbjct: 353 VVSWTSIIAGCAQNGKDIEALELFREMQVAG-VKPNHVTIPSMLPACGNIAALGHGRSTH 411
Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
GFA+R L +V + +ALIDMY+KCG ++ ++ VF + K+ + W+S+++G+ +HGK
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVF-NMMPTKNLVCWNSLMNGFSMHGKA 470
Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
E + ++ ++ KPD I+ +LSACG+ GL +EG + + + Y IKP E +C
Sbjct: 471 KEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSC 530
Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
+V++LGRAG+L A D IK MP EP +WGAL+++ + N ++ ++A + L LEPEN
Sbjct: 531 MVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN 590
Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCS 520
P YV LSN+YA+ W V +R M+ GLKK+PGCSWI + + + DK+HP
Sbjct: 591 PGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQI 650
Query: 521 VSIYEMLDDLILIMRGAAASPHL 543
I E +D++ MR + P+L
Sbjct: 651 DQITEKMDEISKEMRKSGHRPNL 673
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/499 (24%), Positives = 243/499 (48%), Gaps = 54/499 (10%)
Query: 39 TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
T Q+H++IL G ++ ++S KLI +Y+ + LV SI +Y ++SLI K
Sbjct: 34 TTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTK 93
Query: 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
+++ +FS M+ + PD L + K+ E+ VG IH +S G +D +
Sbjct: 94 AKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFV 153
Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK- 217
S+ MY++CG+ + +FD M ++V + + + +A G VV R+ +M+
Sbjct: 154 QGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVV---RILSEMES 210
Query: 218 ---RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
N+ +W +++G+ ++G EA+V+F ++ P++V++ SVLP+ L+
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIH-HLGFCPDQVTVSSVLPSVGDSEMLN 269
Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS--------------------------- 307
G+ IHG+ I++ L D + +A+IDMY K G
Sbjct: 270 MGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLS 329
Query: 308 ----LDCARRVFE---DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
+D A +FE + + + ++W+SI++G +GK EA+ L+ +M G KP+ +
Sbjct: 330 RNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHV 389
Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
TI +L ACG + G + + + + + + ++DM + G+++ +
Sbjct: 390 TIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLSQIVFNM 448
Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI--QLEPENPSNYVSLSNLYASSRRWD 478
MP + + W +L++ MHG ++ ++SL+ +L+P+ ++S ++L ++ +
Sbjct: 449 MPTK-NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD----FISFTSLLSACGQVG 503
Query: 479 AVAE----LRTMMKDRGLK 493
E + M ++ G+K
Sbjct: 504 LTDEGWKYFKMMSEEYGIK 522
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 330 bits (847), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 272/478 (56%), Gaps = 44/478 (9%)
Query: 61 LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
+IT YA G+ +++ +F+ +DV+ + ++++GY++N EA ELF M N
Sbjct: 256 IITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNE--- 312
Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
+ N++++ YV+ + LFD
Sbjct: 313 ------------------------------------VSWNAMLAGYVQGERMEMAKELFD 336
Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
MP RNV +WN I+G+A G S ++ +FD+M +R+ +W AMI GY Q+G EA
Sbjct: 337 VMPCRNVSTWNTMITGYAQCGKIS---EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEA 393
Query: 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300
L LF++M+ ++ N+ S S L TC+ ++ L GKQ+HG ++ + NAL+
Sbjct: 394 LRLFVQME-REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452
Query: 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360
MY KCGS++ A +F++ + KD ++W+++++GY HG G A+ + M G KPD
Sbjct: 453 MYCKCGSIEEANDLFKEMA-GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDA 511
Query: 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420
T+V VLSAC +GL+++G + + ++ Y + P ++ AC+VD+LGRAG L+ A + +K
Sbjct: 512 TMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKN 571
Query: 421 MPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480
MP EP +IWG L+ AS +HGN+E+ + A + +EPEN YV LSNLYASS RW V
Sbjct: 572 MPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDV 631
Query: 481 AELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
+LR M+D+G+KK PG SWI I KTH FSV D+ HP I+ L++L L M+ A
Sbjct: 632 GKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAG 689
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 114/445 (25%), Positives = 203/445 (45%), Gaps = 64/445 (14%)
Query: 61 LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM-------- 112
+I+ Y G+ ++ +F+ + +D+ +N +I GYV+N +A ELF M
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSW 160
Query: 113 ------YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG-----------LSIKIGFVVD 155
Y N DD ++ E D++ L+ + K
Sbjct: 161 NTMLSGYAQNGCVDD--ARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218
Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
++ N L+ +VK K E FD M R+V SWN I+G+A SG + +R++FD+
Sbjct: 219 LVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGK---IDEARQLFDE 275
Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
++V+ WTAM++GY+QN ++EA LF +M E N+VS ++ L+G
Sbjct: 276 SPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP-----ERNEVSWNAM---------LAG 321
Query: 276 GKQIHGFAIRKELN-----HDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
Q + KEL +VS N +I Y++CG + A+ +F D +D ++W+++
Sbjct: 322 YVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF-DKMPKRDPVSWAAM 380
Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
++GY G EA+ L+ +M G + + + LS C + G +++ +
Sbjct: 381 IAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL----- 435
Query: 391 IKPTTEICACVVD-----MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEM 445
+K E C V M + G ++ A D K M + S W +++ HG E+
Sbjct: 436 VKGGYET-GCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS-WNTMIAGYSRHGFGEV 493
Query: 446 QDLAYKSLIQ--LEPENPSNYVSLS 468
++S+ + L+P++ + LS
Sbjct: 494 ALRFFESMKREGLKPDDATMVAVLS 518
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 154/324 (47%), Gaps = 43/324 (13%)
Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
N ++S Y++ G+F LFDEMP+R++ SWNV I G+ + + ++R +F+ M R
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLG---KARELFEIMPER 155
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV-----------SLVSVLPTCS 268
+V +W M++GY QNG +D+A +F M K+ + N + + +
Sbjct: 156 DVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRE 215
Query: 269 SLIGLSGGKQIHGFAIRKELNH-----------DVSLCNALIDMYSKCGSLDCARRVFED 317
+ +S + GF +K++ DV N +I Y++ G +D AR++F++
Sbjct: 216 NWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE 275
Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
S +D TW+++VSGY + EA L++KM + + ++ +L+ + +
Sbjct: 276 SPV-QDVFTWTAMVSGYIQNRMVEEARELFDKM----PERNEVSWNAMLAGYVQGERMEM 330
Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRA--GQLDRALDFIKTMPVEPSPSIWGALVS 435
E+++ + P + + G A G++ A + MP + P W A+++
Sbjct: 331 AKELFD-------VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIA 382
Query: 436 ASVMHGNSEMQDLAYKSLIQLEPE 459
G+S A + +Q+E E
Sbjct: 383 GYSQSGHSFE---ALRLFVQMERE 403
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 129/320 (40%), Gaps = 46/320 (14%)
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV--------------SLVSVLP 265
++ W I+ Y++ G +EAL +F M + N + L +P
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP 122
Query: 266 T---CSSLIGLSG-------GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
S + + G GK F I E DV N ++ Y++ G +D AR VF
Sbjct: 123 ERDLVSWNVMIKGYVRNRNLGKARELFEIMPE--RDVCSWNTMLSGYAQNGCVDDARSVF 180
Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
D K+ ++W++++S Y + K EA +L+ +++ +L + I
Sbjct: 181 -DRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSR----ENWALVSWNCLLGGFVKKKKI 235
Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
E + ++S+ + T ++ ++G++D A PV+ + W A+VS
Sbjct: 236 VEARQFFDSMNVRDVVSWNT-----IITGYAQSGKIDEARQLFDESPVQDVFT-WTAMVS 289
Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495
+ + M + A + ++ N ++ ++ Y R + EL +M R +
Sbjct: 290 GYI---QNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVS-- 344
Query: 496 PGCSWIS-IHGKTHCFSVAD 514
+W + I G C +++
Sbjct: 345 ---TWNTMITGYAQCGKISE 361
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 327 bits (839), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 177/485 (36%), Positives = 270/485 (55%), Gaps = 14/485 (2%)
Query: 40 KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS------QLVFNSIQHKDVYLYNSLI 93
KQ H+++L G + + + TK ++ C T S Q+VF+ D +L+N +I
Sbjct: 31 KQIHARMLKTGLMQDSYAITKFLS---FCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 87
Query: 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
G+ + +L L+ M S+ + +T ++ K + IH K+G+
Sbjct: 88 RGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYE 147
Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
DV NSL++ Y G F LFD +P+ + SWN I G+ +G + + +F
Sbjct: 148 NDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALT---LF 204
Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
+M +N +WT MI+GYVQ EAL LF EMQ D +EP+ VSL + L C+ L L
Sbjct: 205 RKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD-VEPDNVSLANALSACAQLGAL 263
Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
GK IH + + + D L LIDMY+KCG ++ A VF++ K W++++SG
Sbjct: 264 EQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK-KKSVQAWTALISG 322
Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
Y HG G EA+ + +M +G KP++IT VL+AC +GL+ EG I+ S+ Y +KP
Sbjct: 323 YAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKP 382
Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
T E C+VD+LGRAG LD A FI+ MP++P+ IWGAL+ A +H N E+ + + L
Sbjct: 383 TIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEIL 442
Query: 454 IQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVA 513
I ++P + YV +N++A ++WD AE R +MK++G+ K PGCS IS+ G TH F
Sbjct: 443 IAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAG 502
Query: 514 DKAHP 518
D++HP
Sbjct: 503 DRSHP 507
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 69/359 (19%)
Query: 12 LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
L +S + + T L+ + + + T Q H+QI LG+ ++ + LI +YA+ G
Sbjct: 107 LCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNF 166
Query: 72 TQSQLVFNSIQHKDVYLYNSLINGYVKNHG------------------------------ 101
+ L+F+ I D +NS+I GYVK
Sbjct: 167 KLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQAD 226
Query: 102 -HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
+ EAL+LF M S+V PD+ +LA ++ L G IH K +D +L
Sbjct: 227 MNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGC 286
Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
L+ MY KCG+ E L +F + +++V +W IS
Sbjct: 287 VLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALIS------------------------- 321
Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
GY +G EA+ F+EMQ K I+PN ++ +VL CS + GK I
Sbjct: 322 ---------GYAYHGHGREAISKFMEMQ-KMGIKPNVITFTAVLTACSYTGLVEEGKLIF 371
Query: 281 GFAIRKELNHDVSLCN--ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
+++ ++ N ++ + ++D+ + G LD A+R ++ +A+ W +++ +H
Sbjct: 372 -YSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH 429
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 173/496 (34%), Positives = 288/496 (58%), Gaps = 5/496 (1%)
Query: 35 SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
+L K+ H ++ G SN +V L+ Y+LCG ++ VF+ +DV+ +N +I+
Sbjct: 150 ALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMIS 209
Query: 95 GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
GY + + E++EL M + VSP TL + ++KD ++ +H +
Sbjct: 210 GYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP 269
Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
+ L N+L++ Y CG+ + +F M R+V SW + G+ G+ L +R FD
Sbjct: 270 SLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKL---ARTYFD 326
Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
QM R+ +WT MI+GY++ G +E+L +F EMQ I P++ ++VSVL C+ L L
Sbjct: 327 QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLE 385
Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
G+ I + + ++ +DV + NALIDMY KCG + A++VF D +D TW+++V G
Sbjct: 386 IGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKFTWTAMVVGL 444
Query: 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394
+G+G EA+ ++ +M + +PD IT +GVLSAC SG++++ + + + + +RI+P+
Sbjct: 445 ANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPS 504
Query: 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454
C+VDMLGRAG + A + ++ MP+ P+ +WGAL+ AS +H + M +LA K ++
Sbjct: 505 LVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKIL 564
Query: 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD 514
+LEP+N + Y L N+YA +RW + E+R + D +KK+PG S I ++G H F D
Sbjct: 565 ELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGD 624
Query: 515 KAHPCSVSIYEMLDDL 530
K+H S IY L++L
Sbjct: 625 KSHLQSEEIYMKLEEL 640
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 199/469 (42%), Gaps = 84/469 (17%)
Query: 25 HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYA--LCGQPTQSQLVFNSIQ 82
F+ + ++ KQ HSQ ++ G NP KL + L G + + +F I
Sbjct: 36 RFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIP 95
Query: 83 HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD---LNV 139
DV ++N++I G+ K E + L+ NM V+PD T + L+G +D L
Sbjct: 96 EPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFL--LNGLKRDGGALAC 153
Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
G +H +K G ++ + N+L+ MY CG +FD + +V SWN+
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNL------- 206
Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
MI+GY + + +E++ L +EM+ ++ + P V+
Sbjct: 207 ---------------------------MISGYNRMKEYEESIELLVEME-RNLVSPTSVT 238
Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
L+ VL CS + K++H + + + L NAL++ Y+ CG +D A R+F S
Sbjct: 239 LLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR-SM 297
Query: 320 FNKDAITWSSIVSGYGLHGK-------------------------------GHEAVLLYN 348
+D I+W+SIV GY G +E++ ++
Sbjct: 298 KARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFR 357
Query: 349 KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408
+M G PD T+V VL+AC G + G E + I+ +IK + ++DM +
Sbjct: 358 EMQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNALIDMYFKC 416
Query: 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS--------EMQDLA 449
G ++A M + W A+V +G +MQD++
Sbjct: 417 GCSEKAQKVFHDMD-QRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMS 464
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 172/493 (34%), Positives = 287/493 (58%), Gaps = 9/493 (1%)
Query: 43 HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
H++I+ H + FV +LI + + VF+ + + +VYLY ++I+G+V +
Sbjct: 49 HAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRS 108
Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
+ + L+ M +++V PD++ + ++ K DL V IH +K+GF + +
Sbjct: 109 ADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKM 164
Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
M +Y K G+ +FDEMP R+ + V I+ ++ G + + +F +K ++
Sbjct: 165 MEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECG---FIKEALELFQDVKIKDTV 221
Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
WTAMI+G V+N ++++AL LF EMQ+++ + N+ + V VL CS L L G+ +H F
Sbjct: 222 CWTAMIDGLVRNKEMNKALELFREMQMEN-VSANEFTAVCVLSACSDLGALELGRWVHSF 280
Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
+ + + NALI+MYS+CG ++ ARRVF +KD I++++++SG +HG E
Sbjct: 281 VENQRMELSNFVGNALINMYSRCGDINEARRVFRVMR-DKDVISYNTMISGLAMHGASVE 339
Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
A+ + MV G +P+ +T+V +L+AC GL++ GLE++NS+ + ++P E C+V
Sbjct: 340 AINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIV 399
Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462
D+LGR G+L+ A FI+ +P+EP + G L+SA +HGN E+ + K L + E +
Sbjct: 400 DLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSG 459
Query: 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVS 522
YV LSNLYASS +W E+R M+D G++K PGCS I + + H F V D AHP +
Sbjct: 460 TYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEA 519
Query: 523 IYEMLDDLILIMR 535
IY+ L +L I+R
Sbjct: 520 IYQRLQELNRILR 532
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 153/382 (40%), Gaps = 68/382 (17%)
Query: 36 LKLTKQSHSQILSLGHISNPFV-------------------------------STKLITA 64
LK+ ++ H+Q+L LG S+ V +T +I
Sbjct: 139 LKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINC 198
Query: 65 YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
Y+ CG ++ +F ++ KD + ++I+G V+N N+ALELF M NVS ++FT
Sbjct: 199 YSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTA 258
Query: 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ 184
+ ++ L +G +H + + N+L++MY +CG +E +F M
Sbjct: 259 VCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRD 318
Query: 185 RNVGSWNVRISGHASSG-DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
++V S+N ISG A G + R + ++ R N A++N G LD L +
Sbjct: 319 KDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEV 378
Query: 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303
F M+ +EP QI + ++D+
Sbjct: 379 FNSMKRVFNVEP----------------------QIEHYG-------------CIVDLLG 403
Query: 304 KCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363
+ G L+ A R E+ D I +++S +HG + ++ PD T V
Sbjct: 404 RVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLF-ESENPDSGTYV 462
Query: 364 GVLSACGRSGLINEGLEIYNSV 385
+ + SG E EI S+
Sbjct: 463 LLSNLYASSGKWKESTEIRESM 484
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 6/173 (3%)
Query: 13 VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
V++ +T+ V L + +L+L + HS + + + FV LI Y+ CG
Sbjct: 251 VSANEFTAVCV---LSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDIN 307
Query: 73 QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
+++ VF ++ KDV YN++I+G + EA+ F +M P+ TL +
Sbjct: 308 EARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACS 367
Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMP 183
L++G+ + S+K F V+ + + ++ + + G+ E + +P
Sbjct: 368 HGGLLDIGLEVFN-SMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIP 419
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 175/500 (35%), Positives = 283/500 (56%), Gaps = 6/500 (1%)
Query: 25 HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
+F+ +S K+ ++ I+ G + F+ TK++ + +FN + +
Sbjct: 12 YFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNP 71
Query: 85 DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS-PDDFTLATISKLSGEIKDLNVGMLI 143
+V+LYNS+I Y N + + + ++ + + PD FT + K + +G +
Sbjct: 72 NVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQV 131
Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203
HG K G V+ N+L+ MY+K + +FDEM +R+V SWN +SG+A G
Sbjct: 132 HGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQM 191
Query: 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263
+++ +F M + + +WTAMI+GY G EA+ F EMQL IEP+++SL+SV
Sbjct: 192 K---KAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG-IEPDEISLISV 247
Query: 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD 323
LP+C+ L L GK IH +A R+ +CNALI+MYSKCG + A ++F KD
Sbjct: 248 LPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQME-GKD 306
Query: 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383
I+WS+++SGY HG H A+ +N+M KP+ IT +G+LSAC G+ EGL ++
Sbjct: 307 VISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFD 366
Query: 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNS 443
+ Y+I+P E C++D+L RAG+L+RA++ KTMP++P IWG+L+S+ GN
Sbjct: 367 MMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNL 426
Query: 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503
++ +A L++LEPE+ NYV L+N+YA +W+ V+ LR M+++ +KK+PG S I +
Sbjct: 427 DVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEV 486
Query: 504 HGKTHCFSVADKAHPCSVSI 523
+ F D + P I
Sbjct: 487 NNIVQEFVSGDNSKPFWTEI 506
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 320 bits (821), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 188/540 (34%), Positives = 292/540 (54%), Gaps = 38/540 (7%)
Query: 19 TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
T T+ + L A R ++ K+ HS I+ LG N VS L+ YA CG P ++ VF
Sbjct: 145 TQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVF 204
Query: 79 N-------------------------------SIQHKDVYLYNSLINGYVKNHGHNEALE 107
+ + +D+ +NS+I+G+ + AL+
Sbjct: 205 DRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALD 264
Query: 108 LFSNMYYSNV-SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY 166
+FS M ++ SPD FTLA++ ++ L +G IH + GF + I+ N+L+SMY
Sbjct: 265 IFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMY 324
Query: 167 VKCGKFSECLNLFDEMPQRN--VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW 224
+CG L ++ ++ + + + G+ GD + +++ +F +K R+V AW
Sbjct: 325 SRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN---QAKNIFVSLKDRDVVAW 381
Query: 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284
TAMI GY Q+G EA+ LF M + PN +L ++L SSL LS GKQIHG A+
Sbjct: 382 TAMIVGYEQHGSYGEAINLFRSM-VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAV 440
Query: 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAV 344
+ + VS+ NALI MY+K G++ A R F+ +D ++W+S++ HG EA+
Sbjct: 441 KSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEAL 500
Query: 345 LLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
L+ M+ G +PD IT VGV SAC +GL+N+G + ++ + + +I PT AC+VD+
Sbjct: 501 ELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDL 560
Query: 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464
GRAG L A +FI+ MP+EP WG+L+SA +H N ++ +A + L+ LEPEN Y
Sbjct: 561 FGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAY 620
Query: 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIY 524
+L+NLY++ +W+ A++R MKD +KK G SWI + K H F V D HP IY
Sbjct: 621 SALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIY 680
Score = 176 bits (445), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 121/476 (25%), Positives = 223/476 (46%), Gaps = 47/476 (9%)
Query: 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN 111
+ F +++AY+ G + F+ + +D + ++I GY +++A+ + +
Sbjct: 77 LRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGD 136
Query: 112 MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171
M + P FTL + + + G +H +K+G +V ++NSL++MY KCG
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196
Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231
+FD M R++ SWN I+ H G L + F+QM R++ W +MI+G+
Sbjct: 197 PMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQ---FEQMAERDIVTWNSMISGF 253
Query: 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
Q G AL +F +M + P++ +L SVL C++L L GKQIH + +
Sbjct: 254 NQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDIS 313
Query: 292 VSLCNALIDMYSKCGSLDCARRVFED--------------------------------SS 319
+ NALI MYS+CG ++ ARR+ E S
Sbjct: 314 GIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSL 373
Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
++D + W++++ GY HG EA+ L+ MV G +P+ T+ +LS ++ G
Sbjct: 374 KDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGK 433
Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQL---DRALDFIKTMPVEPSPSIWGALVSA 436
+I+ S + + I + + ++ M +AG + RA D I+ E W +++ A
Sbjct: 434 QIHGSAVKSGEIYSVS-VSNALITMYAKAGNITSASRAFDLIR---CERDTVSWTSMIIA 489
Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT---MMKD 489
HG++E +++++ +E P ++++ ++++ V + R MMKD
Sbjct: 490 LAQHGHAEEALELFETML-MEGLRP-DHITYVGVFSACTHAGLVNQGRQYFDMMKD 543
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 158/310 (50%), Gaps = 38/310 (12%)
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
L+H IK G + V L N+LM++Y K G LFDEMP R SWN +S ++ G
Sbjct: 35 LVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRG 94
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
D + FDQ+ +R+ +WT MI GY G +A+ + +M +K+ IEP + +L
Sbjct: 95 DMD---STCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDM-VKEGIEPTQFTLT 150
Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---- 317
+VL + ++ + GK++H F ++ L +VS+ N+L++MY+KCG A+ VF+
Sbjct: 151 NVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVR 210
Query: 318 --SSFN------------------------KDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
SS+N +D +TW+S++SG+ G A+ +++KM+
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKML 270
Query: 352 --CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409
L S PD T+ VLSAC + G +I++ ++ T + + ++ M R G
Sbjct: 271 RDSLLS-PDRFTLASVLSACANLEKLCIGKQIHSHIVTT-GFDISGIVLNALISMYSRCG 328
Query: 410 QLDRALDFIK 419
++ A I+
Sbjct: 329 GVETARRLIE 338
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 320 bits (821), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 191/584 (32%), Positives = 304/584 (52%), Gaps = 73/584 (12%)
Query: 13 VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
V+SR +Q + + +L KQ H+QI+ + ++ KLI+A +LC Q
Sbjct: 13 VSSRRIFEERLQDLPKCA----NLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTN 68
Query: 73 QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
+ VFN +Q +V+L NSLI + +N +A +FS M + D+FT + K
Sbjct: 69 LAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACS 128
Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG------------KFSE------ 174
L V ++H K+G D+ + N+L+ Y +CG K SE
Sbjct: 129 GQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSW 188
Query: 175 ---------------CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
LFDEMPQR++ SWN + G+A + S ++ +F++M R
Sbjct: 189 NSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMS---KAFELFEKMPER 245
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLK-----------------------DRIEPN 256
N +W+ M+ GY + GD++ A V+F +M L DR+
Sbjct: 246 NTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQ 305
Query: 257 KVS---------LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307
V+ ++S+L C+ LS G +IH R L + + NAL+DMY+KCG+
Sbjct: 306 MVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGN 365
Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
L A VF D KD ++W++++ G G+HG G EA+ L+++M G +PD +T + VL
Sbjct: 366 LKKAFDVFNDIP-KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLC 424
Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP 427
+C +GLI+EG++ + S+ Y + P E C+VD+LGR G+L A+ ++TMP+EP+
Sbjct: 425 SCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNV 484
Query: 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487
IWGAL+ A MH ++ +L++L+P +P NY LSN+YA++ W+ VA++R+ M
Sbjct: 485 VIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKM 544
Query: 488 KDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLI 531
K G++K G S + + H F+V DK+HP S IY+ML LI
Sbjct: 545 KSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLI 588
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 319 bits (818), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 177/505 (35%), Positives = 288/505 (57%), Gaps = 15/505 (2%)
Query: 35 SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ--SQLVFNSIQHKDVYLYNSL 92
+L KQ H +L G + ++ TKLI G P ++ V +Q ++ +L+ ++
Sbjct: 61 NLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAV 120
Query: 93 INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152
I GY +EA+ ++ M ++P FT + + K G +KDLN+G H + ++
Sbjct: 121 IRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRG 180
Query: 153 VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRV 212
V + N+++ MYVKC +FDEMP+R+V SW I+ +A G+ +
Sbjct: 181 FCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAE---L 237
Query: 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272
F+ + +++ AWTAM+ G+ QN EAL F M+ K I ++V++ + C+ L G
Sbjct: 238 FESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRME-KSGIRADEVTVAGYISACAQL-G 295
Query: 273 LSG----GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328
S QI + +H V + +ALIDMYSKCG+++ A VF S NK+ T+S
Sbjct: 296 ASKYADRAVQIAQKSGYSPSDH-VVIGSALIDMYSKCGNVEEAVNVFM-SMNNKNVFTYS 353
Query: 329 SIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
S++ G HG+ EA+ L++ MV KP+ +T VG L AC SGL+++G ++++S+
Sbjct: 354 SMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQ 413
Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
T+ ++PT + C+VD+LGR G+L AL+ IKTM VEP +WGAL+ A +H N E+ +
Sbjct: 414 TFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAE 473
Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW-ISIHGK 506
+A + L +LEP+ NY+ LSN+YAS+ W V +R ++K++GLKK+P SW + +G+
Sbjct: 474 IAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQ 533
Query: 507 THCFSVADKAHPCSVSIYEMLDDLI 531
H F + HP S I + L++L+
Sbjct: 534 MHKFFPGNLNHPMSNKIQDKLEELV 558
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 84/379 (22%), Positives = 145/379 (38%), Gaps = 78/379 (20%)
Query: 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLG-----HISNPFVS---------------- 58
S T L+ T + L L +Q H+Q L ++ N +
Sbjct: 149 SFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFD 208
Query: 59 ----------TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALEL 108
T+LI AYA G + +F S+ KD+ + +++ G+ +N EALE
Sbjct: 209 EMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEY 268
Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD--VILANSLMSMY 166
F M S + D+ T+A ++ ++ K G+ V++ ++L+ MY
Sbjct: 269 FDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMY 328
Query: 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226
KCG E +N+F M +N V+ +++
Sbjct: 329 SKCGNVEEAVNVFMSMNNKN----------------------------------VFTYSS 354
Query: 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-----HG 281
MI G +G EAL LF M + I+PN V+ V L CS + G+Q+
Sbjct: 355 MILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQT 414
Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
F ++ +H ++D+ + G L A + + S W +++ +H
Sbjct: 415 FGVQPTRDH----YTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPE 470
Query: 342 EAVLLYNKMVCLGSKPDII 360
A + + L +PDII
Sbjct: 471 IAEIAAEHLFEL--EPDII 487
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG-SLD-CARRVFE 316
SL+S L C I L+ KQIHG +RK L+ + LI +K G +D ARRV E
Sbjct: 51 SLISKLDDC---INLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIE 107
Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
F ++ W++++ GY + GK EA+ +Y M P T +L ACG +N
Sbjct: 108 PVQF-RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLN 166
Query: 377 EGLEIYNSVINTYRIKP--TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
G + + T+R++ + ++DM + +D A MP E W L+
Sbjct: 167 LGRQFH---AQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMP-ERDVISWTELI 222
Query: 435 SASVMHGNSEMQDLAYKSL 453
+A GN E ++SL
Sbjct: 223 AAYARVGNMECAAELFESL 241
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/530 (31%), Positives = 275/530 (51%), Gaps = 35/530 (6%)
Query: 12 LVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71
LV+ AT+ A R + L + HS + L+ Y+ CG
Sbjct: 288 LVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDL 347
Query: 72 TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
++ VF + + V Y S+I GY + EA++LF M +SPD +T+ +
Sbjct: 348 DSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 407
Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
+ L+ G +H + D+ ++N+LM MY KCG E
Sbjct: 408 ARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE----------------- 450
Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
+ VF +M+ +++ +W +I GY +N +EAL LF + +
Sbjct: 451 -----------------AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK 493
Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
R P++ ++ VLP C+SL G++IHG+ +R D + N+L+DMY+KCG+L A
Sbjct: 494 RFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 553
Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
+F+D + +KD ++W+ +++GYG+HG G EA+ L+N+M G + D I+ V +L AC
Sbjct: 554 HMLFDDIA-SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSH 612
Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
SGL++EG +N + + +I+PT E AC+VDML R G L +A FI+ MP+ P +IWG
Sbjct: 613 SGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWG 672
Query: 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491
AL+ +H + ++ + + + +LEPEN YV ++N+YA + +W+ V LR + RG
Sbjct: 673 ALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRG 732
Query: 492 LKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
L+K+PGCSWI I G+ + F D ++P + +I L + M SP
Sbjct: 733 LRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSP 782
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 199/413 (48%), Gaps = 38/413 (9%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T+ LQ+ A +SLK K+ + I G + + + +KL Y CG ++ VF+ +
Sbjct: 96 TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155
Query: 82 QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
+ + +N L+N K+ + ++ LF M S V D +T + +SK ++ ++ G
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
+HG +K GF + NSL++ Y+K + +FDEM +R+V SWN I+G
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING----- 270
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
YV NG ++ L +F++M L IE + ++V
Sbjct: 271 -----------------------------YVSNGLAEKGLSVFVQM-LVSGIEIDLATIV 300
Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
SV C+ +S G+ +H ++ + + CN L+DMYSKCG LD A+ VF + S +
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS-D 359
Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
+ ++++S+++GY G EAV L+ +M G PD+ T+ VL+ C R L++EG +
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419
Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
+ I + + ++DM + G + A M V+ S W ++
Sbjct: 420 H-EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS-WNTII 470
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 37/302 (12%)
Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
D TL ++ +L + K L G + GFV+D L + L MY CG E
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKE----- 147
Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
+ RVFD++K W ++N ++GD
Sbjct: 148 -----------------------------ASRVFDEVKIEKALFWNILMNELAKSGDFSG 178
Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
++ LF +M + +E + + V + SSL + GG+Q+HGF ++ S+ N+L+
Sbjct: 179 SIGLFKKM-MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLV 237
Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
Y K +D AR+VF++ + +D I+W+SI++GY +G + + ++ +M+ G + D+
Sbjct: 238 AFYLKNQRVDSARKVFDEMT-ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDL 296
Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
TIV V + C S LI+ G +++ + C ++DM + G LD A +
Sbjct: 297 ATIVSVFAGCADSRLISLGRAVHSIGVKAC-FSREDRFCNTLLDMYSKCGDLDSAKAVFR 355
Query: 420 TM 421
M
Sbjct: 356 EM 357
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
R+V + + ++G+L+ A+ L L + K I+P +L SVL C+ L GK+
Sbjct: 59 RSVTDANTQLRRFCESGNLENAVKL-LCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKE 115
Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
+ F D +L + L MY+ CG L A RVF++ K A+ W+ +++ G
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEK-ALFWNILMNELAKSG 174
Query: 339 KGHEAVLLYNKMVCLGSKPDIITI 362
++ L+ KM+ G + D T
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTF 198
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 315 bits (808), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 180/555 (32%), Positives = 291/555 (52%), Gaps = 66/555 (11%)
Query: 6 ARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65
A NT S N T T+ L++S+++ + L KQ H Q++ LG S V + L+ Y
Sbjct: 125 AYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMY 184
Query: 66 ALCGQPTQSQLVFNSIQHKDVYLYNSL------------------------------ING 95
A G + ++ VF + ++ +YNSL I G
Sbjct: 185 ANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKG 244
Query: 96 YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
+N EA+E F M + D + ++ G + +N G IH I+ F
Sbjct: 245 LAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDH 304
Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
+ + ++L+ MY KC +CL+ ++ VFD+
Sbjct: 305 IYVGSALIDMYCKC----KCLHY------------------------------AKTVFDR 330
Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
MK++NV +WTAM+ GY Q G +EA+ +FL+MQ + I+P+ +L + C+++ L
Sbjct: 331 MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQ-RSGIDPDHYTLGQAISACANVSSLEE 389
Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
G Q HG AI L H V++ N+L+ +Y KCG +D + R+F + + +DA++W+++VS Y
Sbjct: 390 GSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV-RDAVSWTAMVSAYA 448
Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
G+ E + L++KMV G KPD +T+ GV+SAC R+GL+ +G + + + Y I P+
Sbjct: 449 QFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSI 508
Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
+C++D+ R+G+L+ A+ FI MP P W L+SA GN E+ A +SLI+
Sbjct: 509 GHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIE 568
Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
L+P +P+ Y LS++YAS +WD+VA+LR M+++ +KK PG SWI GK H FS D+
Sbjct: 569 LDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDE 628
Query: 516 AHPCSVSIYEMLDDL 530
+ P IY L++L
Sbjct: 629 SSPYLDQIYAKLEEL 643
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/453 (28%), Positives = 224/453 (49%), Gaps = 23/453 (5%)
Query: 54 NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNM- 112
N F L+ AY+ G ++ + F + +D +N LI GY + A++ ++ M
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130
Query: 113 --YYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
+ +N++ TL T+ KLS +++G IHG IK+GF +++ + L+ MY G
Sbjct: 131 RDFSANLT--RVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVG 188
Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
S+ +F + RN +N + G + G ++ + ++F M++ +V +W AMI G
Sbjct: 189 CISDAKKVFYGLDDRNTVMYNSLMGGLLACG---MIEDALQLFRGMEKDSV-SWAAMIKG 244
Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
QNG EA+ F EM+++ ++ ++ SVLP C L ++ GKQIH IR
Sbjct: 245 LAQNGLAKEAIECFREMKVQG-LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQD 303
Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
+ + +ALIDMY KC L A+ VF D K+ ++W+++V GYG G+ EAV ++ M
Sbjct: 304 HIYVGSALIDMYCKCKCLHYAKTVF-DRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDM 362
Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
G PD T+ +SAC + EG + + I + I T + +V + G+ G
Sbjct: 363 QRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVT-VSNSLVTLYGKCGD 421
Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPENPSNYVSLS 468
+D + M V + S W A+VSA G + + ++Q L+P+ V+L+
Sbjct: 422 IDDSTRLFNEMNVRDAVS-WTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDG----VTLT 476
Query: 469 NLYASSRRWDAVAE----LRTMMKDRGLKKSPG 497
+ ++ R V + + M + G+ S G
Sbjct: 477 GVISACSRAGLVEKGQRYFKLMTSEYGIVPSIG 509
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 157/355 (44%), Gaps = 39/355 (10%)
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
+IHG I+ + L N+++ Y + +FD +PQ N+ SWN + ++ +G
Sbjct: 27 MIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAG 86
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
L+ F+++ R+ W +I GY +G + A+ + M +V+L+
Sbjct: 87 ---LISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLM 143
Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF------ 315
++L SS +S GKQIHG I+ + + + L+ MY+ G + A++VF
Sbjct: 144 TMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDR 203
Query: 316 ------------------EDS-----SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352
ED+ KD+++W++++ G +G EA+ + +M
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKV 263
Query: 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLD 412
G K D VL ACG G INEG +I+ +I T + + + ++DM + L
Sbjct: 264 QGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGSALIDMYCKCKCLH 322
Query: 413 RALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYV 465
A M + S W A+V V +G + + A K + ++ +P +Y
Sbjct: 323 YAKTVFDRMKQKNVVS-WTAMV---VGYGQTGRAEEAVKIFLDMQRSGIDPDHYT 373
Score = 39.3 bits (90), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 31/141 (21%)
Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE-------------------- 316
K IHG IR + L N ++ Y+ S ARRVF+
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 317 ------DSSFNK----DAITWSSIVSGYGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGV 365
+S+F K D +TW+ ++ GY L G AV YN M+ + +T++ +
Sbjct: 86 GLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTM 145
Query: 366 LSACGRSGLINEGLEIYNSVI 386
L +G ++ G +I+ VI
Sbjct: 146 LKLSSSNGHVSLGKQIHGQVI 166
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 315 bits (807), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 162/458 (35%), Positives = 258/458 (56%), Gaps = 36/458 (7%)
Query: 77 VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
VF + KDV YN++I GY ++ + +AL + M +++ PD FTL+++ + E D
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVD 257
Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
+ G IHG I+ G DV + +SL+ MY K + +
Sbjct: 258 VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIED---------------------- 295
Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
S RVF ++ R+ +W +++ GYVQNG +EAL LF +M + +++P
Sbjct: 296 ------------SERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQM-VTAKVKPG 342
Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
V+ SV+P C+ L L GKQ+HG+ +R ++ + +AL+DMYSKCG++ AR++F+
Sbjct: 343 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFD 402
Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
+ D ++W++I+ G+ LHG GHEAV L+ +M G KP+ + V VL+AC GL++
Sbjct: 403 RMNV-LDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVD 461
Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
E +NS+ Y + E A V D+LGRAG+L+ A +FI M VEP+ S+W L+S+
Sbjct: 462 EAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSS 521
Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
+H N E+ + + + ++ EN YV + N+YAS+ RW +A+LR M+ +GL+K P
Sbjct: 522 CSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKP 581
Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIM 534
CSWI + KTH F D++HP I E L ++ M
Sbjct: 582 ACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQM 619
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 215/430 (50%), Gaps = 15/430 (3%)
Query: 19 TSATVQHFLQVSATHRSLKLTKQSHSQIL---SLGHISNPFVSTKLITAYALCGQPTQSQ 75
+ A ++ ++ +S KQ H+Q + SL H S V I+ Y ++
Sbjct: 4 SKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIV----ISIYTNLKLLHEAL 59
Query: 76 LVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135
L+F +++ V + S+I + ++AL F M S PD ++ K +
Sbjct: 60 LLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMM 119
Query: 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC---GKFSECLNLFDEMPQRNVGSWNV 192
DL G +HG +++G D+ N+LM+MY K G N+FDEMPQR S +
Sbjct: 120 DLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDE 179
Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
+ F + RRVF+ M R++V ++ +I GY Q+G ++AL + EM D
Sbjct: 180 DVKAETCIMPFG-IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTD- 237
Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
++P+ +L SVLP S + + GK+IHG+ IRK ++ DV + ++L+DMY+K ++ +
Sbjct: 238 LKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSE 297
Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
RVF + +D I+W+S+V+GY +G+ +EA+ L+ +MV KP + V+ AC
Sbjct: 298 RVF-SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHL 356
Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
++ G +++ V+ I + +VDM + G + A M V S W A
Sbjct: 357 ATLHLGKQLHGYVLRG-GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTA 414
Query: 433 LVSASVMHGN 442
++ +HG+
Sbjct: 415 IIMGHALHGH 424
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 38/320 (11%)
Query: 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
S T+ L + + + + K+ H ++ G S+ ++ + L+ YA + S+ VF+
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 301
Query: 80 SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
+ +D +NSL+ GYV+N +NEAL LF M + V P +++ + L++
Sbjct: 302 RLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHL 361
Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
G +HG ++ GF ++ +A++L+ MY KCG +FD M + SW I GHA
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421
Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
G +G+ EA+ LF EM+ + ++PN+V+
Sbjct: 422 HG---------------------------HGH-------EAVSLFEEMK-RQGVKPNQVA 446
Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRK--ELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
V+VL CS +GL + ++ K LN ++ A+ D+ + G L+ A
Sbjct: 447 FVAVLTACSH-VGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISK 505
Query: 318 SSFNKDAITWSSIVSGYGLH 337
WS+++S +H
Sbjct: 506 MCVEPTGSVWSTLLSSCSVH 525
>sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310
OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
Length = 657
Score = 315 bits (807), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 169/498 (33%), Positives = 282/498 (56%), Gaps = 6/498 (1%)
Query: 38 LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
L +Q H ++ G S+ FV +IT Y C ++ VF+ + +DV +NS+I+GY
Sbjct: 150 LARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYS 209
Query: 98 KNHGHNEALELFSNMYY-SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
++ + +++ M S+ P+ T+ ++ + G+ DL G+ +H I+ +D+
Sbjct: 210 QSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDL 269
Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
L N+++ Y KCG LFDEM +++ ++ ISG+ + G LV + +F +M
Sbjct: 270 SLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHG---LVKEAMALFSEM 326
Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
+ + W AMI+G +QN +E + F EM ++ PN V+L S+LP+ + L GG
Sbjct: 327 ESIGLSTWNAMISGLMQNNHHEEVINSFREM-IRCGSRPNTVTLSSLLPSLTYSSNLKGG 385
Query: 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
K+IH FAIR ++++ + ++ID Y+K G L A+RVF D+ ++ I W++I++ Y +
Sbjct: 386 KEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVF-DNCKDRSLIAWTAIITAYAV 444
Query: 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
HG A L+++M CLG+KPD +T+ VLSA SG + I++S++ Y I+P E
Sbjct: 445 HGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVE 504
Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
AC+V +L RAG+L A++FI MP++P +WGAL++ + + G+ E+ A L ++
Sbjct: 505 HYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEM 564
Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
EPEN NY ++NLY + RW+ +R MK GLKK PG SWI F D +
Sbjct: 565 EPENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIAKDSS 624
Query: 517 HPCSVSIYEMLDDLILIM 534
S +YE+++ L+ M
Sbjct: 625 CERSKEMYEIIEGLVESM 642
Score = 162 bits (409), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 123/463 (26%), Positives = 207/463 (44%), Gaps = 83/463 (17%)
Query: 25 HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
H +Q HR Q H++I+ + F+++KLI+ Y + Q+ VF+ I +
Sbjct: 27 HLIQHFTRHRLPLHVLQLHARIVVFSIKPDNFLASKLISFYTRQDRFRQALHVFDEITVR 86
Query: 85 DVYLYNSLINGYVKNHGHNEALELF-----SNMYYSNVS-PDDFTLATISKLSGEIKDLN 138
+ + YN+L+ Y + +A LF S+ Y S+ + PD +++ + K D
Sbjct: 87 NAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFW 146
Query: 139 VGML---IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS 195
+G L +HG I+ GF DV + N +++ Y KC +FDEM +R+V SWN IS
Sbjct: 147 LGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMIS 206
Query: 196 GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
G++ SG F ++ ++ M +P
Sbjct: 207 GYSQSGSF----------------------------------EDCKKMYKAMLACSDFKP 232
Query: 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
N V+++SV C L G ++H I + D+SLCNA+I Y+KCGSLD AR +F
Sbjct: 233 NGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALF 292
Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL---------------------- 353
++ S KD++T+ +I+SGY HG EA+ L+++M +
Sbjct: 293 DEMS-EKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVI 351
Query: 354 ---------GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404
GS+P+ +T+ +L + S + G EI+ I + ++D
Sbjct: 352 NSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRN-GADNNIYVTTSIIDN 410
Query: 405 LGRAGQL---DRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
+ G L R D K + S W A+++A +HG+S+
Sbjct: 411 YAKLGFLLGAQRVFDNCK----DRSLIAWTAIITAYAVHGDSD 449
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 314 bits (805), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 176/491 (35%), Positives = 281/491 (57%), Gaps = 12/491 (2%)
Query: 41 QSHSQILS---LGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
Q H+ IL L H P ++ KL AYA G+ S +F+ D++L+ + IN
Sbjct: 47 QIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTAS 106
Query: 98 KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVI 157
N ++A L+ + S ++P++FT +++ K S K G LIH +K G +D
Sbjct: 107 INGLKDQAFLLYVQLLSSEINPNEFTFSSLLK-SCSTKS---GKLIHTHVLKFGLGIDPY 162
Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
+A L+ +Y K G +FD MP+R++ S I+ +A G+ V +R +FD M
Sbjct: 163 VATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGN---VEAARALFDSMC 219
Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
R++ +W MI+GY Q+G ++AL+LF ++ + + +P+++++V+ L CS + L G+
Sbjct: 220 ERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGR 279
Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
IH F + +V +C LIDMYSKCGSL+ A VF D+ KD + W+++++GY +H
Sbjct: 280 WIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTP-RKDIVAWNAMIAGYAMH 338
Query: 338 GKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
G +A+ L+N+M + G +P IT +G L AC +GL+NEG+ I+ S+ Y IKP E
Sbjct: 339 GYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIE 398
Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
C+V +LGRAGQL RA + IK M ++ +W +++ + +HG+ + + LI L
Sbjct: 399 HYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGL 458
Query: 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA 516
+N YV LSN+YAS ++ VA++R +MK++G+ K PG S I I K H F D+
Sbjct: 459 NIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDRE 518
Query: 517 HPCSVSIYEML 527
H S IY ML
Sbjct: 519 HSKSKEIYTML 529
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 141/341 (41%), Gaps = 75/341 (21%)
Query: 35 SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV----------------- 77
S K K H+ +L G +P+V+T L+ YA G +Q V
Sbjct: 141 STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMIT 200
Query: 78 --------------FNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDF 122
F+S+ +D+ +N +I+GY ++ N+AL LF + PD+
Sbjct: 201 CYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEI 260
Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
T+ +I L G IH ++V + L+ MY KCG E + +F++
Sbjct: 261 TVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDT 320
Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
P++++ +WN I+G+A ++GY Q +AL
Sbjct: 321 PRKDIVAWNAMIAGYA-----------------------------MHGYSQ-----DALR 346
Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI-----HGFAIRKELNHDVSLCNA 297
LF EMQ ++P ++ + L C+ ++ G +I + I+ ++ H
Sbjct: 347 LFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEH----YGC 402
Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
L+ + + G L A ++ + + D++ WSS++ LHG
Sbjct: 403 LVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHG 443
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/517 (33%), Positives = 285/517 (55%), Gaps = 9/517 (1%)
Query: 28 QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
+VSA ++L H + + +PFV T + YA CG+ ++ VF+ + H+DV
Sbjct: 123 KVSALFEGMEL----HGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVV 178
Query: 88 LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
+N++I Y + +EA +LF M SNV PD+ L I G ++ I+
Sbjct: 179 TWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFL 238
Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
I+ +D L +L++MY G F +M RN+ +SG++ G
Sbjct: 239 IENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLD--- 295
Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
++ +FDQ +++++ WT MI+ YV++ EAL +F EM I+P+ VS+ SV+ C
Sbjct: 296 DAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSG-IKPDVVSMFSVISAC 354
Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
++L L K +H L ++S+ NALI+MY+KCG LD R VFE ++ ++W
Sbjct: 355 ANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSW 413
Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
SS+++ +HG+ +A+ L+ +M +P+ +T VGVL C SGL+ EG +I+ S+ +
Sbjct: 414 SSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTD 473
Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
Y I P E C+VD+ GRA L AL+ I++MPV + IWG+L+SA +HG E+
Sbjct: 474 EYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGK 533
Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
A K +++LEP++ V +SN+YA +RW+ V +R +M+++ + K G S I +GK+
Sbjct: 534 FAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKS 593
Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
H F + DK H S IY LD+++ ++ A P G
Sbjct: 594 HEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCG 630
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 121/459 (26%), Positives = 214/459 (46%), Gaps = 43/459 (9%)
Query: 34 RSLKLTKQSHSQILS--LGHISNPFV------STKLITAYALCGQPTQSQLVFNSIQHK- 84
+SL KQ H+ IL + H N F+ S+ + +YAL VF+SI
Sbjct: 23 KSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALN--------VFSSIPSPP 74
Query: 85 DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
+ ++N + ++ + + + + D F+ I K ++ L GM +H
Sbjct: 75 ESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELH 134
Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFS 204
G++ KI + D + M MY CG+ + N+FDEM R+V +WN I + F
Sbjct: 135 GVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCR---FG 191
Query: 205 LVVRSRRVFDQMKRRNVYAWTAMI------NGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258
LV + ++F++MK NV ++ G N + A+ FL IE N V
Sbjct: 192 LVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFL-------IE-NDV 243
Query: 259 SLVSVLPTCSSLIGLSGGKQIHGFA---IRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315
+ + L T +L+ + G A RK ++ + A++ YSKCG LD A+ +F
Sbjct: 244 RMDTHLLT--ALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIF 301
Query: 316 EDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375
D + KD + W++++S Y EA+ ++ +M C G KPD++++ V+SAC G++
Sbjct: 302 -DQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGIL 360
Query: 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435
++ ++ S I+ ++ I +++M + G LD D + MP S W ++++
Sbjct: 361 DKAKWVH-SCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVS-WSSMIN 418
Query: 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474
A MHG + L+ + ++ E P+ + LY S
Sbjct: 419 ALSMHGEAS-DALSLFARMKQENVEPNEVTFVGVLYGCS 456
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 179/533 (33%), Positives = 288/533 (54%), Gaps = 48/533 (9%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVFNS 80
T+ L + L+ K+ H+ L G + N FV + L+ Y C Q + VF+
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363
Query: 81 IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNV 139
+ + + L+N++I GY +N EAL LF M S + + T+A + +
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
IHG +K G D + N+LM MY + GK
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI--------------------------- 456
Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR------- 252
D ++ R+F +M+ R++ W MI GYV + ++AL+L +MQ +R
Sbjct: 457 --DIAM-----RIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGAS 509
Query: 253 ---IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309
++PN ++L+++LP+C++L L+ GK+IH +AI+ L DV++ +AL+DMY+KCG L
Sbjct: 510 RVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQ 569
Query: 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369
+R+VF D K+ ITW+ I+ YG+HG G EA+ L M+ G KP+ +T + V +AC
Sbjct: 570 MSRKVF-DQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAAC 628
Query: 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS- 428
SG+++EGL I+ + Y ++P+++ ACVVD+LGRAG++ A + MP + + +
Sbjct: 629 SHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG 688
Query: 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488
W +L+ AS +H N E+ ++A ++LIQLEP S+YV L+N+Y+S+ WD E+R MK
Sbjct: 689 AWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMK 748
Query: 489 DRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
++G++K PGCSWI + H F D +HP S + L+ L MR P
Sbjct: 749 EQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVP 801
Score = 139 bits (349), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 126/514 (24%), Positives = 226/514 (43%), Gaps = 67/514 (13%)
Query: 26 FLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
L+ A + ++L KQ H+ + G+ + + V+ L+ Y CG VF+ I +
Sbjct: 103 LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 162
Query: 85 DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEI---KDLNVGM 141
+ +NSLI+ ALE F M NV P FTL ++ + + L +G
Sbjct: 163 NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 222
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
+H ++ G + I+ N+L++MY K GK +
Sbjct: 223 QVHAYGLRKGELNSFII-NTLVAMYGKLGKLAS--------------------------- 254
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
S+ + R++ W +++ QN L EAL EM L+ +EP++ ++
Sbjct: 255 -------SKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEG-VEPDEFTIS 306
Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
SVLP CS L L GK++H +A++ L+ + + +AL+DMY C + RRVF D F
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF-DGMF 365
Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLINEGL 379
++ W+++++GY + EA+LL+ M G + T+ GV+ AC RSG +
Sbjct: 366 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 425
Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
I+ V+ + + ++DM R G++D A+ M + W +++ V
Sbjct: 426 AIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVF 483
Query: 440 HGNSE--------MQDLAYK-----SLIQLEPENPSNYVSLSNLYASSRRWDAVAELR-- 484
+ E MQ+L K S + L+P N ++L + S A+A+ +
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKP----NSITLMTILPSCAALSALAKGKEI 539
Query: 485 ---TMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
+ + + G + + ++ K C ++ K
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 182/404 (45%), Gaps = 55/404 (13%)
Query: 44 SQILSLGHISNPFV------STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYV 97
SQ+L +P++ S A A+ G P+ +F S Q + + L+ V
Sbjct: 19 SQLLPFSRHKHPYLLRATPTSATEDVASAVSGAPS----IFIS-QSRSPEWWIDLLRSKV 73
Query: 98 KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD-V 156
+++ EA+ + +M + PD++ + K +++D+ +G IH K G+ VD V
Sbjct: 74 RSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSV 133
Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
+AN+L+++Y KCG F +FD + +RN SWN IS S + + + + R
Sbjct: 134 TVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCM--- 190
Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI---GL 273
L + +EP+ +LVSV+ CS+L GL
Sbjct: 191 --------------------------------LDENVEPSSFTLVSVVTACSNLPMPEGL 218
Query: 274 SGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
GKQ+H + +RK ELN + N L+ MY K G L + +V S +D +TW++++S
Sbjct: 219 MMGKQVHAYGLRKGELNSFI--INTLVAMYGKLGKL-ASSKVLLGSFGGRDLVTWNTVLS 275
Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
+ + EA+ +MV G +PD TI VL AC ++ G E++ + +
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD 335
Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
+ + + +VDM Q+ M + +W A+++
Sbjct: 336 ENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 13/180 (7%)
Query: 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
S T+ L A +L K+ H+ + ++ V + L+ YA CG S+ VF+
Sbjct: 517 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 576
Query: 80 SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
I K+V +N +I Y + EA++L M V P++ T ++ +
Sbjct: 577 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACS-----HS 631
Query: 140 GMLIHGLSIKIGFVVDVILANS------LMSMYVKCGKFSECLNLFDEMPQ--RNVGSWN 191
GM+ GL I D + S ++ + + G+ E L + MP+ G+W+
Sbjct: 632 GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWS 691
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 174/503 (34%), Positives = 292/503 (58%), Gaps = 22/503 (4%)
Query: 27 LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC------GQPTQ----SQL 76
LQ ++ LK+ H +L IS+ FV+++L+ ALC +PT +
Sbjct: 19 LQSCSSFSDLKII---HGFLLRTHLISDVFVASRLL---ALCVDDSTFNKPTNLLGYAYG 72
Query: 77 VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
+F+ IQ+ +++++N LI + ++A ++ M S + PD+ T + K S E++
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
+ VG H ++ GF DV + NSL+ MY CG + +F +M R+V SW ++G
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192
Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
+ G +V +R +FD+M RN++ W+ MINGY +N ++A+ LF E ++ + N
Sbjct: 193 YCKCG---MVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF-EFMKREGVVAN 248
Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
+ +VSV+ +C+ L L G++ + + ++ + ++ L AL+DM+ +CG ++ A VFE
Sbjct: 249 ETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFE 308
Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
D+++WSSI+ G +HG H+A+ +++M+ LG P +T VLSAC GL+
Sbjct: 309 GLP-ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVE 367
Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
+GLEIY ++ + I+P E C+VDMLGRAG+L A +FI M V+P+ I GAL+ A
Sbjct: 368 KGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGA 427
Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
++ N+E+ + LI+++PE+ YV LSN+YA + +WD + LR MMK++ +KK P
Sbjct: 428 CKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPP 487
Query: 497 GCSWISIHGKTHCFSVA-DKAHP 518
G S I I GK + F++ D+ HP
Sbjct: 488 GWSLIEIDGKINKFTMGDDQKHP 510
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 122/270 (45%), Gaps = 40/270 (14%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVS----------------------- 58
T ++ S+ + + +Q+HSQI+ G ++ +V
Sbjct: 119 TFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQM 178
Query: 59 --------TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
T ++ Y CG ++ +F+ + H++++ ++ +INGY KN+ +A++LF
Sbjct: 179 GFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFE 238
Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
M V ++ + ++ + L G + +K V++IL +L+ M+ +CG
Sbjct: 239 FMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCG 298
Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-----RNVYAWT 225
+ +++F+ +P+ + SW+ I G A G ++ F QM R+V +T
Sbjct: 299 DIEKAIHVFEGLPETDSLSWSSIIKGLAVHGH---AHKAMHYFSQMISLGFIPRDV-TFT 354
Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEP 255
A+++ G +++ L ++ M+ IEP
Sbjct: 355 AVLSACSHGGLVEKGLEIYENMKKDHGIEP 384
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 312 bits (799), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 183/535 (34%), Positives = 296/535 (55%), Gaps = 12/535 (2%)
Query: 4 SSARNTFALVTS--RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTK 60
SS F L +S R+ S Q FL + L KQ H I+ G +S ++
Sbjct: 112 SSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEVKQIHCHIIVSGCLSLGNYLWNS 171
Query: 61 LITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD 120
L+ Y G ++ VF + H DV +N +I GY K EAL+L+ M + PD
Sbjct: 172 LVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPD 231
Query: 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV--DVILANSLMSMYVKCGKFSECLNL 178
++T+ ++ G + D+ +G +HG + G V ++IL+N+L+ MY KC +
Sbjct: 232 EYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRA 291
Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG-DL 237
FD M ++++ SWN + G GD ++ VFDQM +R++ +W +++ GY + G D
Sbjct: 292 FDAMKKKDMRSWNTMVVGFVRLGDME---AAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQ 348
Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
LF EM + ++++P++V++VS++ ++ LS G+ +HG IR +L D L +A
Sbjct: 349 RTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSA 408
Query: 298 LIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
LIDMY KCG ++ A VF+ ++ KD W+S+++G HG G +A+ L+ +M G P
Sbjct: 409 LIDMYCKCGIIERAFMVFKTAT-EKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTP 467
Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417
+ +T++ VL+AC SGL+ EGL ++N + + + P TE +VD+L RAG+++ A D
Sbjct: 468 NNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDI 527
Query: 418 I-KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
+ K MP+ PS S+WG+++SA + E +LA L++LEPE YV LSN+YA+ R
Sbjct: 528 VQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGR 587
Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKA-HPCSVSIYEMLDDL 530
W + R M++RG+KK+ G S + H F A+K HP I +L L
Sbjct: 588 WGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPRWTEIKRILQHL 642
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 311 bits (797), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 183/564 (32%), Positives = 302/564 (53%), Gaps = 50/564 (8%)
Query: 17 NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ-PT--- 72
N+T A+V L + A K Q H+ L G VS L++ Y+ C P+
Sbjct: 148 NFTFASVLAGLALVADDE--KQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLH 205
Query: 73 QSQLVFNSIQHKD--------------------------------VYLYNSLINGYVKNH 100
++ VF+ I KD + YN++I+GYV
Sbjct: 206 SARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRG 265
Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK---IGFVVDVI 157
+ EALE+ M S + D+FT ++ + L +G +H ++ F D
Sbjct: 266 FYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD-- 323
Query: 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217
NSL+S+Y KCGKF E +F++MP +++ SWN +SG+ SSG + ++ +F +MK
Sbjct: 324 --NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGH---IGEAKLIFKEMK 378
Query: 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGK 277
+N+ +W MI+G +NG +E L LF M+ ++ EP + + +C+ L G+
Sbjct: 379 EKNILSWMIMISGLAENGFGEEGLKLFSCMK-REGFEPCDYAFSGAIKSCAVLGAYCNGQ 437
Query: 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
Q H ++ + +S NALI MY+KCG ++ AR+VF D+++W+++++ G H
Sbjct: 438 QYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMP-CLDSVSWNALIAALGQH 496
Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
G G EAV +Y +M+ G +PD IT++ VL+AC +GL+++G + ++S+ YRI P +
Sbjct: 497 GHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADH 556
Query: 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457
A ++D+L R+G+ A I+++P +P+ IW AL+S +HGN E+ +A L L
Sbjct: 557 YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLI 616
Query: 458 PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAH 517
PE+ Y+ LSN++A++ +W+ VA +R +M+DRG+KK CSWI + + H F V D +H
Sbjct: 617 PEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSH 676
Query: 518 PCSVSIYEMLDDLILIMRGAAASP 541
P + ++Y L DL MR P
Sbjct: 677 PEAEAVYIYLQDLGKEMRRLGYVP 700
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/449 (25%), Positives = 211/449 (46%), Gaps = 55/449 (12%)
Query: 51 HISNP--FVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYVKNHGHNEAL 106
IS P T +++ Y G T ++ VF + +D +YN++I G+ N+ A+
Sbjct: 74 EISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAI 133
Query: 107 ELFSNMYYSNVSPDDFTLATI-SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165
LF M + PD+FT A++ + L+ D + H ++K G ++N+L+S+
Sbjct: 134 NLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSV 193
Query: 166 YVKCGKFSECLN----LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR-N 220
Y KC L+ +FDE+ +++ SW ++G+ +G F L + + M
Sbjct: 194 YSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDL---GEELLEGMDDNMK 250
Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
+ A+ AMI+GYV G EAL + M + IE ++ + SV+ C++ L GKQ+H
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRM-VSSGIELDEFTYPSVIRACATAGLLQLGKQVH 309
Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
+ +R+E + N+L+ +Y KCG D AR +FE KD ++W++++SGY G
Sbjct: 310 AYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMP-AKDLVSWNALLSGYVSSGHI 367
Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT------YRIKPT 394
EA L++ +M + +I++ + ++S +G EGL++++ + Y
Sbjct: 368 GEAKLIFKEM----KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGA 423
Query: 395 TEICA----------------------------CVVDMLGRAGQLDRALDFIKTMPVEPS 426
+ CA ++ M + G ++ A +TMP S
Sbjct: 424 IKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDS 483
Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
S W AL++A HG+ Y+ +++
Sbjct: 484 VS-WNALIAALGQHGHGAEAVDVYEEMLK 511
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 49/357 (13%)
Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
L + +HG I GF + N L+ +Y K + + LFDE+ + + + +SG
Sbjct: 30 LQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSG 89
Query: 197 HASSGDFSLVVRSRRVFDQMK--RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
+ +SGD +L +R VF++ R+ + AMI G+ N D A+ LF +M+ + +
Sbjct: 90 YCASGDITL---ARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMK-HEGFK 145
Query: 255 PNKVSLVSVLPTCSSLIGLSGGK--QIHGFAIRKELNHDVSLCNALIDMYSKCGS----L 308
P+ + SVL +L+ + Q H A++ + S+ NAL+ +YSKC S L
Sbjct: 146 PDNFTFASVLAGL-ALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLL 204
Query: 309 DCARRVFEDSSFNKDAITWSSIVSGY------------------------------GLHG 338
AR+VF D KD +W+++++GY G
Sbjct: 205 HSARKVF-DEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVN 263
Query: 339 KG--HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396
+G EA+ + +MV G + D T V+ AC +GL+ G +++ V+ R +
Sbjct: 264 RGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLR--REDFSFH 321
Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
+V + + G+ D A + MP + S W AL+S V G+ L +K +
Sbjct: 322 FDNSLVSLYYKCGKFDEARAIFEKMPAKDLVS-WNALLSGYVSSGHIGEAKLIFKEM 377
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 310 bits (793), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 161/491 (32%), Positives = 274/491 (55%), Gaps = 6/491 (1%)
Query: 51 HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFS 110
H+ N + +++ Y G ++++VF+S+ +DV +N+++ GY ++ +EAL +
Sbjct: 109 HLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYK 168
Query: 111 NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG 170
S + ++F+ A + + + L + HG + GF+ +V+L+ S++ Y KCG
Sbjct: 169 EFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCG 228
Query: 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
+ FDEM +++ W ISG+A GD + ++F +M +N +WTA+I G
Sbjct: 229 QMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEA---AEKLFCEMPEKNPVSWTALIAG 285
Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
YV+ G + AL LF +M + ++P + + S L +S+ L GK+IHG+ IR +
Sbjct: 286 YVRQGSGNRALDLFRKM-IALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRP 344
Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
+ + ++LIDMYSK GSL+ + RVF D + W++++S HG GH+A+ + + M
Sbjct: 345 NAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDM 404
Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
+ +P+ T+V +L+AC SGL+ EGL + S+ + I P E AC++D+LGRAG
Sbjct: 405 IKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGC 464
Query: 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470
+ I+ MP EP IW A++ +HGN E+ A LI+L+PE+ + Y+ LS++
Sbjct: 465 FKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSI 524
Query: 471 YASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD--KAHPCSVSIYEMLD 528
YA +W+ V +LR +MK R + K SWI I K F+V+D AH IY +L
Sbjct: 525 YADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAFTVSDGSHAHARKEEIYFILH 584
Query: 529 DLILIMRGAAA 539
+L ++ A+
Sbjct: 585 NLAAVIEEEAS 595
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 183/370 (49%), Gaps = 43/370 (11%)
Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILANSLMSMYVKCGKFSECLN 177
P D LA++ + G+ K L G IH GF + +L+N L+ MY+KCGK +
Sbjct: 45 PFDL-LASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACK 103
Query: 178 LFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237
+FD+M RN+ SWN +SG+ SG ++VR+R VFD M R+V +W M+ GY Q+G+L
Sbjct: 104 VFDQMHLRNLYSWNNMVSGYVKSG---MLVRARVVFDSMPERDVVSWNTMVIGYAQDGNL 160
Query: 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297
EAL + E + + I+ N+ S +L C L +Q HG + +V L +
Sbjct: 161 HEALWFYKEFR-RSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCS 219
Query: 298 LIDMYSKCGSLDCARRVFEDSSF------------------------------NKDAITW 327
+ID Y+KCG ++ A+R F++ + K+ ++W
Sbjct: 220 IIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSW 279
Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
+++++GY G G+ A+ L+ KM+ LG KP+ T L A + G EI+ +I
Sbjct: 280 TALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIR 339
Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
T ++P + + ++DM ++G L+ + + + W ++SA HG
Sbjct: 340 T-NVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHG------ 392
Query: 448 LAYKSLIQLE 457
L +K+L L+
Sbjct: 393 LGHKALRMLD 402
Score = 112 bits (279), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 141/345 (40%), Gaps = 66/345 (19%)
Query: 26 FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
L R L+L +Q+H Q+L G +SN +S +I AYA CGQ ++ F+ + KD
Sbjct: 185 LLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKD 244
Query: 86 VYLYNSLIN-------------------------------GYVKNHGHNEALELFSNMYY 114
++++ +LI+ GYV+ N AL+LF M
Sbjct: 245 IHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIA 304
Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
V P+ FT ++ S I L G IHG I+ + I+ +SL+ MY K G
Sbjct: 305 LGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEA 364
Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
+F R+ D + + W MI+ Q+
Sbjct: 365 SERVF-------------------------------RICDD--KHDCVFWNTMISALAQH 391
Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS-SLIGLSGGKQIHGFAIRKELNHDVS 293
G +AL + +M +K R++PN+ +LV +L CS S + G + ++ + D
Sbjct: 392 GLGHKALRMLDDM-IKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQE 450
Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
LID+ + G R E+ F D W++I+ +HG
Sbjct: 451 HYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHG 495
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 308 bits (790), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 170/503 (33%), Positives = 284/503 (56%), Gaps = 10/503 (1%)
Query: 35 SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
+LK KQSH ++ G + K I A + G + VF + YL+N++I
Sbjct: 27 NLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIR 86
Query: 95 GYV---KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
+ + H+ A+ ++ ++ PD FT + K++ + D+ G IHG + G
Sbjct: 87 ALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFG 146
Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
F V + L+ MY CG + +FDEM ++V WN ++G+ G+ +R
Sbjct: 147 FDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMD---EARS 203
Query: 212 VFDQMK--RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
+ + M RN +WT +I+GY ++G EA+ +F M L + +EP++V+L++VL C+
Sbjct: 204 LLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRM-LMENVEPDEVTLLAVLSACAD 262
Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
L L G++I + + +N VSL NA+IDMY+K G++ A VFE + ++ +TW++
Sbjct: 263 LGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVN-ERNVVTWTT 321
Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
I++G HG G EA+ ++N+MV G +P+ +T + +LSAC G ++ G ++NS+ + Y
Sbjct: 322 IIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKY 381
Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
I P E C++D+LGRAG+L A + IK+MP + + +IWG+L++AS +H + E+ + A
Sbjct: 382 GIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERA 441
Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
LI+LEP N NY+ L+NLY++ RWD +R MMK G+KK G S I + + +
Sbjct: 442 LSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYK 501
Query: 510 FSVADKAHPCSVSIYEMLDDLIL 532
F D HP I+E+L ++ L
Sbjct: 502 FISGDLTHPQVERIHEILQEMDL 524
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 145/354 (40%), Gaps = 77/354 (21%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T L+++ + +Q H Q++ G S+ V T LI Y CG ++ +F+ +
Sbjct: 118 TFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEM 177
Query: 82 QHKDVYLYNSL---------------------------------INGYVKNHGHNEALEL 108
KDV ++N+L I+GY K+ +EA+E+
Sbjct: 178 LVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEV 237
Query: 109 FSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK 168
F M NV PD+ TL + ++ L +G I G V L N+++ MY K
Sbjct: 238 FQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAK 297
Query: 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228
G ++ L++F+ + +RNV +W I+G A+ G +
Sbjct: 298 SGNITKALDVFECVNERNVVTWTTIIAGLATHGHGA------------------------ 333
Query: 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG-----FA 283
EAL +F M +K + PN V+ +++L CS + + GK++ +
Sbjct: 334 ----------EALAMFNRM-VKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYG 382
Query: 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
I + H +ID+ + G L A V + F +A W S+++ +H
Sbjct: 383 IHPNIEH----YGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVH 432
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 4/225 (1%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T+ L A SL+L ++ S + G ++ +I YA G T++ VF +
Sbjct: 252 TLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECV 311
Query: 82 QHKDVYLYNSLINGYVKNHGHN-EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
++V + ++I G + HGH EAL +F+ M + V P+D T I + +++G
Sbjct: 312 NERNVVTWTTIIAG-LATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLG 370
Query: 141 -MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHA 198
L + + K G ++ ++ + + GK E + MP + N W ++
Sbjct: 371 KRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASN 430
Query: 199 SSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVL 243
D L R+ +++ N + + N Y G DE+ ++
Sbjct: 431 VHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMM 475
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 308 bits (789), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 173/481 (35%), Positives = 272/481 (56%), Gaps = 48/481 (9%)
Query: 65 YALC--GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122
+ LC G+ +++ +F+ + + V + +++ GY +N+ ++A ++F +V P+
Sbjct: 180 HGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIF------DVMPEKT 233
Query: 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182
++ S L G YV+ G+ + LF+ M
Sbjct: 234 EVSWTSMLMG---------------------------------YVQNGRIEDAEELFEVM 260
Query: 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242
P + V + N ISG G+ + ++RRVFD MK RN +W +I + +NG EAL
Sbjct: 261 PVKPVIACNAMISGLGQKGE---IAKARRVFDSMKERNDASWQTVIKIHERNGFELEALD 317
Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302
LF+ MQ K + P +L+S+L C+SL L GKQ+H +R + + DV + + L+ MY
Sbjct: 318 LFILMQ-KQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMY 376
Query: 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIIT 361
KCG L ++ +F D +KD I W+SI+SGY HG G EA+ ++ +M GS KP+ +T
Sbjct: 377 IKCGELVKSKLIF-DRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVT 435
Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
V LSAC +G++ EGL+IY S+ + + +KP T AC+VDMLGRAG+ + A++ I +M
Sbjct: 436 FVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSM 495
Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
VEP ++WG+L+ A H ++ + K LI++EPEN Y+ LSN+YAS RW VA
Sbjct: 496 TVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVA 555
Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCFSVAD-KAHPCSVSIYEMLDDLILIMRGAAAS 540
ELR +MK R ++KSPGCSW + K H F+ +HP SI ++LD+L ++R A +
Sbjct: 556 ELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYN 615
Query: 541 P 541
P
Sbjct: 616 P 616
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 151/307 (49%), Gaps = 32/307 (10%)
Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
NS+++ Y + LFDEMP RN+ SWN +SG+ +G+ +R+VFD M R
Sbjct: 52 NSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEID---EARKVFDLMPER 108
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
NV +WTA++ GYV NG +D A LF +M E NKVS + LIG +I
Sbjct: 109 NVVSWTALVKGYVHNGKVDVAESLFWKMP-----EKNKVSWTVM------LIGFLQDGRI 157
Query: 280 HGFAIRKEL--NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH 337
E+ + D ++I K G +D AR +F++ S + ITW+++V+GYG +
Sbjct: 158 DDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMS-ERSVITWTTMVTGYGQN 216
Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397
+ +A +++ M + ++ +L ++G I + E++ + P +
Sbjct: 217 NRVDDARKIFDVM----PEKTEVSWTSMLMGYVQNGRIEDAEELFE-------VMPVKPV 265
Query: 398 CAC--VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
AC ++ LG+ G++ +A +M E + + W ++ +G E++ L L+Q
Sbjct: 266 IACNAMISGLGQKGEIAKARRVFDSMK-ERNDASWQTVIKIHERNG-FELEALDLFILMQ 323
Query: 456 LEPENPS 462
+ P+
Sbjct: 324 KQGVRPT 330
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 14/172 (8%)
Query: 19 TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
T T+ L V A+ SL KQ H+Q++ + +V++ L+T Y CG+ +S+L+F
Sbjct: 330 TFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIF 389
Query: 79 NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFT-LATISKLSGEIKD 136
+ KD+ ++NS+I+GY + EAL++F M S + P++ T +AT+S S
Sbjct: 390 DRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACS----- 444
Query: 137 LNVGMLIHGL----SIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEM 182
GM+ GL S++ F V I A+ ++ M + G+F+E + + D M
Sbjct: 445 -YAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSM 495
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 308 bits (788), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 165/497 (33%), Positives = 275/497 (55%), Gaps = 38/497 (7%)
Query: 41 QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
Q H+ I+ G S+PFV LI+ Y+ G + +F+ + KDV + ++I+G+V+N
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183
Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VDVILA 159
+EA+ F M + V+ ++ T+ ++ K +G+++D+ G +HGL ++ G V DV +
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243
Query: 160 NSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219
+SL+ MY KC + + +++VFD+M R
Sbjct: 244 SSLVDMYGKCSCYDD----------------------------------AQKVFDEMPSR 269
Query: 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQI 279
NV WTA+I GYVQ+ D+ +++F EM LK + PN+ +L SVL C+ + L G+++
Sbjct: 270 NVVTWTALIAGYVQSRCFDKGMLVFEEM-LKSDVAPNEKTLSSVLSACAHVGALHRGRRV 328
Query: 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGK 339
H + I+ + + + LID+Y KCG L+ A VFE K+ TW+++++G+ HG
Sbjct: 329 HCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFE-RLHEKNVYTWTAMINGFAAHGY 387
Query: 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399
+A L+ M+ P+ +T + VLSAC GL+ EG ++ S+ + ++P + A
Sbjct: 388 ARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYA 447
Query: 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459
C+VD+ GR G L+ A I+ MP+EP+ +WGAL + ++H + E+ A +I+L+P
Sbjct: 448 CMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPS 507
Query: 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPC 519
+ Y L+NLY+ S+ WD VA +R MKD+ + KSPG SWI + GK F D P
Sbjct: 508 HSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPL 567
Query: 520 -SVSIYEMLDDLILIMR 535
S +Y+ LD + + MR
Sbjct: 568 ESDDLYKTLDTVGVQMR 584
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 107/265 (40%), Gaps = 8/265 (3%)
Query: 28 QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
V A HR ++ H ++ N T LI Y CG ++ LVF + K+VY
Sbjct: 318 HVGALHRG----RRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVY 373
Query: 88 LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
+ ++ING+ + +A +LF M S+VSP++ T + + G + LS
Sbjct: 374 TWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLF-LS 432
Query: 148 IKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMPQRNVG-SWNVRISGHASSGDFS 204
+K F ++ + ++ ++ + G E L + MP W D+
Sbjct: 433 MKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYE 492
Query: 205 LVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL 264
L + +++ + +T + N Y ++ + DE + +M+ + ++ S + V
Sbjct: 493 LGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
Query: 265 PTCSSLIGLSGGKQIHGFAIRKELN 289
I K + + K L+
Sbjct: 553 GKLCEFIAFDDKKPLESDDLYKTLD 577
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 306 bits (783), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 190/572 (33%), Positives = 294/572 (51%), Gaps = 87/572 (15%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T+ + L A+ + L KQ H ++ I N FV L+ YA CG ++ VF+++
Sbjct: 231 TLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNM 290
Query: 82 QHKDVYLYNSLINGYVKNHGHNEALELFS------------------------------- 110
KDV +N+++ GY + +A+ LF
Sbjct: 291 SVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350
Query: 111 ----NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI---KIGFVVDV------- 156
M S + P++ TL IS LSG +VG L+HG I I + +D+
Sbjct: 351 GVCRQMLSSGIKPNEVTL--ISVLSG---CASVGALMHGKEIHCYAIKYPIDLRKNGHGD 405
Query: 157 --ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
++ N L+ MY KC K +FD +
Sbjct: 406 ENMVINQLIDMYAKCKKVDTARAMFDSLSP------------------------------ 435
Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGL 273
K R+V WT MI GY Q+GD ++AL L EM +D + PN ++ L C+SL L
Sbjct: 436 --KERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAAL 493
Query: 274 SGGKQIHGFAIRKELNH-DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
GKQIH +A+R + N + + N LIDMY+KCGS+ AR VF D+ K+ +TW+S+++
Sbjct: 494 RIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF-DNMMAKNEVTWTSLMT 552
Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
GYG+HG G EA+ ++++M +G K D +T++ VL AC SG+I++G+E +N + + +
Sbjct: 553 GYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVS 612
Query: 393 PTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452
P E AC+VD+LGRAG+L+ AL I+ MP+EP P +W A +S +HG E+ + A +
Sbjct: 613 PGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEK 672
Query: 453 LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSV 512
+ +L + +Y LSNLYA++ RW V +R++M+ +G+KK PGCSW+ T F V
Sbjct: 673 ITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFV 732
Query: 513 ADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544
DK HP + IY++L D + ++ P G
Sbjct: 733 GDKTHPHAKEIYQVLLDHMQRIKDIGYVPETG 764
Score = 199 bits (505), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 136/453 (30%), Positives = 229/453 (50%), Gaps = 24/453 (5%)
Query: 10 FALVTSRNYT--SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67
F L+ S ++T + T + S++ + +H+ L G ISN FV L+ Y+
Sbjct: 115 FGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSR 174
Query: 68 CGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLAT 126
C + ++ VF+ + DV +NS+I Y K ALE+FS M PD+ TL
Sbjct: 175 CRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVN 234
Query: 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186
+ + ++G +H ++ + ++ + N L+ MY KCG E +F M ++
Sbjct: 235 VLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKD 294
Query: 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALV 242
V SWN ++G++ G F V R+F++M+ + +V W+A I+GY Q G EAL
Sbjct: 295 VVSWNAMVAGYSQIGRFEDAV---RLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALG 351
Query: 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAI------RKELNHDVSLC- 295
+ +M L I+PN+V+L+SVL C+S+ L GK+IH +AI RK + D ++
Sbjct: 352 VCRQM-LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI 410
Query: 296 NALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV--- 351
N LIDMY+KC +D AR +F+ S +D +TW+ ++ GY HG ++A+ L ++M
Sbjct: 411 NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470
Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
C ++P+ TI L AC + G +I+ + + + C++DM + G +
Sbjct: 471 C-QTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529
Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
A M + + W +L++ MHG E
Sbjct: 530 SDARLVFDNM-MAKNEVTWTSLMTGYGMHGYGE 561
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 127/454 (27%), Positives = 205/454 (45%), Gaps = 80/454 (17%)
Query: 34 RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD--VYLYNS 91
+++ K H ++LS G I +++ LI+ Y G + + + D VY +NS
Sbjct: 39 KTISQVKLIHQKLLSFG-ILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNS 97
Query: 92 LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151
LI Y N N+ L LF M+ + +PD++T + K GEI + G H LS+ G
Sbjct: 98 LIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTG 157
Query: 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211
F+ +V + N+L++MY +C S+ +FDEM +V SWN
Sbjct: 158 FISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWN-------------------- 197
Query: 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271
++I Y + G AL +F M + P+ ++LV+VLP C+SL
Sbjct: 198 --------------SIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243
Query: 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS------------ 319
S GKQ+H FA+ E+ ++ + N L+DMY+KCG +D A VF + S
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303
Query: 320 --------------FNK--------DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357
F K D +TWS+ +SGY G G+EA+ + +M+ G KP
Sbjct: 304 GYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363
Query: 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK-------PTTEICACVVDMLGRAGQ 410
+ +T++ VLS C G + G EI+ I Y I + ++DM + +
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIHCYAIK-YPIDLRKNGHGDENMVINQLIDMYAKCKK 422
Query: 411 LDRALDFIKTM-PVEPSPSIWGALVSASVMHGNS 443
+D A ++ P E W ++ HG++
Sbjct: 423 VDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 168/385 (43%), Gaps = 52/385 (13%)
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
LIH + G ++ + L + L+S Y+ G S ++L P + G
Sbjct: 46 LIHQKLLSFG-ILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAG------------- 91
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
VY W ++I Y NG ++ L LF M P+ +
Sbjct: 92 -------------------VYHWNSLIRSYGDNGCANKCLYLFGLMH-SLSWTPDNYTFP 131
Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
V C + + G+ H ++ +V + NAL+ MYS+C SL AR+VF++ S
Sbjct: 132 FVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSV- 190
Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVC-LGSKPDIITIVGVLSACGRSGLINEGLE 380
D ++W+SI+ Y GK A+ ++++M G +PD IT+V VL C G + G +
Sbjct: 191 WDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ 250
Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
++ + + I+ + C+VDM + G +D A M V+ S W A+V+
Sbjct: 251 LHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVS-WNAMVAGYSQI 308
Query: 441 GNSEMQDLAYKSLIQ--LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP-- 496
G E ++ + + ++ + + ++S ++A+ R M+ G+K +
Sbjct: 309 GRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS-GIKPNEVT 367
Query: 497 ------GCSWIS--IHGKT-HCFSV 512
GC+ + +HGK HC+++
Sbjct: 368 LISVLSGCASVGALMHGKEIHCYAI 392
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 305 bits (782), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 173/522 (33%), Positives = 275/522 (52%), Gaps = 39/522 (7%)
Query: 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
+ T+ L A + L+L Q HS G S+ +V T I+ Y+ CG+ +F
Sbjct: 221 TTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFR 280
Query: 80 SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
+ D+ YN++I+GY N +L LF + S TL ++ +SG L +
Sbjct: 281 EFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGH---LML 337
Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
IHG +K F+ ++ +L ++Y K +
Sbjct: 338 IYAIHGYCLKSNFLSHASVSTALTTVYSKLNE---------------------------- 369
Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS 259
+ +R++FD+ +++ +W AMI+GY QNG ++A+ LF EMQ K PN V+
Sbjct: 370 ------IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ-KSEFSPNPVT 422
Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
+ +L C+ L LS GK +H + + + ALI MY+KCGS+ ARR+F D
Sbjct: 423 ITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF-DLM 481
Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
K+ +TW++++SGYGLHG+G EA+ ++ +M+ G P +T + VL AC +GL+ EG
Sbjct: 482 TKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGD 541
Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM 439
EI+NS+I+ Y +P+ + AC+VD+LGRAG L RAL FI+ M +EP S+W L+ A +
Sbjct: 542 EIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRI 601
Query: 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499
H ++ + + L +L+P+N +V LSN++++ R + A +R K R L K+PG +
Sbjct: 602 HKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYT 661
Query: 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
I I H F+ D++HP IYE L+ L MR A P
Sbjct: 662 LIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQP 703
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 125/544 (22%), Positives = 236/544 (43%), Gaps = 93/544 (17%)
Query: 4 SSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLIT 63
++A T AL++ Y F + S S+ Q+H+QI+ G ++ + TKL
Sbjct: 9 ATAETTAALISKNTYLD-----FFKRST---SISHLAQTHAQIILHGFRNDISLLTKLTQ 60
Query: 64 AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDF 122
+ G ++ +F S+Q DV+L+N L+ G+ N + +L +F+++ S ++ P+
Sbjct: 61 RLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSS 120
Query: 123 TLA-TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
T A IS SG +D G +IHG ++ G +++L ++++ MY K + + +FD
Sbjct: 121 TYAFAISAASG-FRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDR 179
Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV-------------------- 221
MP+++ WN ISG+ + + V S +VF + +
Sbjct: 180 MPEKDTILWNTMISGYRKN---EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQE 236
Query: 222 --------------------YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV--- 258
Y T I+ Y + G + LF E + D + N +
Sbjct: 237 LRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHG 296
Query: 259 ---------------------------SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291
+LVS++P L+ + IHG+ ++
Sbjct: 297 YTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSH 353
Query: 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
S+ AL +YSK ++ AR++F D S K +W++++SGY +G +A+ L+ +M
Sbjct: 354 ASVSTALTTVYSKLNEIESARKLF-DESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412
Query: 352 CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
P+ +TI +LSAC + G ++ G +++ V +T + + + ++ M + G +
Sbjct: 413 KSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRST-DFESSIYVSTALIGMYAKCGSI 471
Query: 412 DRALDFIKTMPVEPSPSIWGALVSASVMHGN-SEMQDLAYKSLIQLEPENPSNYVSLSNL 470
A M + + W ++S +HG E ++ Y+ L P ++ + L
Sbjct: 472 AEARRLFDLM-TKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCV--L 528
Query: 471 YASS 474
YA S
Sbjct: 529 YACS 532
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 305 bits (781), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 173/537 (32%), Positives = 279/537 (51%), Gaps = 47/537 (8%)
Query: 2 ILSSARNTFAL--------VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHIS 53
+L RN+F + + YT ++ L+ L+L +Q HSQI+
Sbjct: 467 LLDDLRNSFRIFRQMQIEEIVPNQYTYPSI---LKTCIRLGDLELGEQIHSQIIKTNFQL 523
Query: 54 NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
N +V + LI YA G+ + + KDV + ++I GY + + ++AL F M
Sbjct: 524 NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 583
Query: 114 YSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173
+ D+ L ++ L G IH + GF D+ N+L+++Y +CGK
Sbjct: 584 DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIE 643
Query: 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ 233
E S F+Q + + AW A+++G+ Q
Sbjct: 644 E----------------------------------SYLAFEQTEAGDNIAWNALVSGFQQ 669
Query: 234 NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293
+G+ +EAL +F+ M ++ I+ N + S + S + GKQ+H + + +
Sbjct: 670 SGNNEEALRVFVRMN-REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETE 728
Query: 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353
+CNALI MY+KCGS+ A + F + S K+ ++W++I++ Y HG G EA+ +++M+
Sbjct: 729 VCNALISMYAKCGSISDAEKQFLEVS-TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 787
Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
+P+ +T+VGVLSAC GL+++G+ + S+ + Y + P E CVVDML RAG L R
Sbjct: 788 NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 847
Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
A +FI+ MP++P +W L+SA V+H N E+ + A L++LEPE+ + YV LSNLYA
Sbjct: 848 AKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAV 907
Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDL 530
S++WDA R MK++G+KK PG SWI + H F V D+ HP + I+E DL
Sbjct: 908 SKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDL 964
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 190/412 (46%), Gaps = 40/412 (9%)
Query: 34 RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI 93
SL++ +Q H +L LG S+ +V L++ Y G ++ +F+++ +D YN+LI
Sbjct: 302 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 361
Query: 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
NG + +A+ELF M+ + PD TLA++ L G +H + K+GF
Sbjct: 362 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFA 421
Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
+ + +L+++Y KC L+ F E NV WNV
Sbjct: 422 SNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNV--------------------- 460
Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
M+ Y DL + +F +MQ+++ I PN+ + S+L TC L L
Sbjct: 461 -------------MLVAYGLLDDLRNSFRIFRQMQIEE-IVPNQYTYPSILKTCIRLGDL 506
Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
G+QIH I+ + +C+ LIDMY+K G LD A + + KD ++W+++++G
Sbjct: 507 ELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTTMIAG 565
Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
Y + +A+ + +M+ G + D + + +SAC + EG +I+ +
Sbjct: 566 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSS 624
Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSI-WGALVSASVMHGNSE 444
+V + R G+++ + ++ E +I W ALVS GN+E
Sbjct: 625 DLPFQNALVTLYSRCGKIEES--YLAFEQTEAGDNIAWNALVSGFQQSGNNE 674
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 185/406 (45%), Gaps = 39/406 (9%)
Query: 32 THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS 91
T+ SL ++ HSQIL LG SN +S KL Y G + VF+ + + ++ +N
Sbjct: 97 TNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNK 156
Query: 92 LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA-TISKLSGEIKDLNVGMLIHGLSIKI 150
+I + E LF M NV+P++ T + + G +V IH +
Sbjct: 157 MIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQ 216
Query: 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSR 210
G ++ N L+ +Y + G V +R
Sbjct: 217 GLRDSTVVCNPLIDLYSRNG----------------------------------FVDLAR 242
Query: 211 RVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL 270
RVFD ++ ++ +W AMI+G +N EA+ LF +M + I P + SVL C +
Sbjct: 243 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLG-IMPTPYAFSSVLSACKKI 301
Query: 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
L G+Q+HG ++ + D +CNAL+ +Y G+L A +F + S +DA+T++++
Sbjct: 302 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTL 360
Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
++G G G +A+ L+ +M G +PD T+ ++ AC G + G +++ +
Sbjct: 361 INGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLH-AYTTKLG 419
Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
+I ++++ + ++ ALD+ VE + +W ++ A
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 464
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 3/185 (1%)
Query: 253 IEPNKVSLVSVLPTCSSLIG-LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
I PN +L +L C G L G+++H ++ L+ + L L D Y G L A
Sbjct: 80 IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139
Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
+VF++ + TW+ ++ E L+ +MV P+ T GVL AC
Sbjct: 140 FKVFDEMP-ERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198
Query: 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431
+ + +E ++ I ++ +T +C ++D+ R G +D A + ++ S W
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS-WV 257
Query: 432 ALVSA 436
A++S
Sbjct: 258 AMISG 262
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 182/589 (30%), Positives = 301/589 (51%), Gaps = 74/589 (12%)
Query: 26 FLQVSATHRSLKLTKQSHSQIL-SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
L+ + + S++L + H++I+ +L PF++ LI Y+ P ++LV +
Sbjct: 12 LLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71
Query: 85 DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144
+V + SLI+G +N + AL F M V P+DFT K ++ G IH
Sbjct: 72 NVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIH 131
Query: 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV------------ 192
L++K G ++DV + S MY K + LFDE+P+RN+ +WN
Sbjct: 132 ALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPR 191
Query: 193 ----------RISGHASSGDF--------------------SLVVRS------------- 209
RI GH +S F LV+RS
Sbjct: 192 EAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLI 251
Query: 210 ------------RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK 257
+F +M +N +W +++ YVQN + ++A VL+L + KD +E +
Sbjct: 252 DFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSR-KDIVETSD 310
Query: 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
+ SVL C+ + GL G+ IH A++ + + + +AL+DMY KCG ++ + + F++
Sbjct: 311 FMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDE 370
Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV---CLGSKPDIITIVGVLSACGRSGL 374
K+ +T +S++ GY G+ A+ L+ +M C G P+ +T V +LSAC R+G
Sbjct: 371 MP-EKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGC-GPTPNYMTFVSLLSACSRAGA 428
Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
+ G++I++S+ +TY I+P E +C+VDMLGRAG ++RA +FIK MP++P+ S+WGAL
Sbjct: 429 VENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQ 488
Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
+A MHG ++ LA ++L +L+P++ N+V LSN +A++ RW +R +K G+KK
Sbjct: 489 NACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKK 548
Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543
G SWI++ + H F D++H + I L L M A P L
Sbjct: 549 GAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDL 597
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 141/360 (39%), Gaps = 46/360 (12%)
Query: 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79
S T FL + L L Q H +L G ++ V LI Y C Q S+++F
Sbjct: 209 SITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFT 268
Query: 80 SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139
+ K+ + SL+ YV+NH +A L+ V DF ++++ + L +
Sbjct: 269 EMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLEL 328
Query: 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199
G IH ++K + + ++L+ MY KCG + FDEMP++N+ + N I G
Sbjct: 329 GRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGG--- 385
Query: 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKV 258
Y G +D AL LF EM + PN +
Sbjct: 386 -------------------------------YAHQGQVDMALALFEEMAPRGCGPTPNYM 414
Query: 259 SLVSVLPTCSSLIGLSGGKQIHG-----FAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313
+ VS+L CS + G +I + I H + ++DM + G ++ A
Sbjct: 415 TFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEH----YSCIVDMLGRAGMVERAYE 470
Query: 314 VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP--DIITIVGVLSACGR 371
+ W ++ + +HGK +L + L K + + + +A GR
Sbjct: 471 FIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGR 530
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 267/476 (56%), Gaps = 5/476 (1%)
Query: 62 ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121
I +A CG ++ VF+ +D+ +N LINGY K +A+ ++ M V PDD
Sbjct: 198 IHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDD 257
Query: 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181
T+ + + DLN G + + G + + L N+LM M+ KCG E +FD
Sbjct: 258 VTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDN 317
Query: 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEAL 241
+ +R + SW ISG+A G L+ SR++FD M+ ++V W AMI G VQ +AL
Sbjct: 318 LEKRTIVSWTTMISGYARCG---LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDAL 374
Query: 242 VLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301
LF EMQ + +P++++++ L CS L L G IH + + L+ +V+L +L+DM
Sbjct: 375 ALFQEMQTSN-TKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDM 433
Query: 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361
Y+KCG++ A VF ++++T+++I+ G LHG A+ +N+M+ G PD IT
Sbjct: 434 YAKCGNISEALSVFHGIQ-TRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEIT 492
Query: 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421
+G+LSAC G+I G + ++ + + + + P + + +VD+LGRAG L+ A +++M
Sbjct: 493 FIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESM 552
Query: 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481
P+E ++WGAL+ MHGN E+ + A K L++L+P + YV L +Y + W+
Sbjct: 553 PMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAK 612
Query: 482 ELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGA 537
R MM +RG++K PGCS I ++G F V DK+ P S IY+ L L MR +
Sbjct: 613 RARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMRSS 668
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/440 (23%), Positives = 203/440 (46%), Gaps = 74/440 (16%)
Query: 40 KQSHSQILSLGHISNPFVSTKLITAYALCGQP--TQSQLVFNSIQHKDVYLYNSLINGYV 97
KQ +Q++ G I +PF S++LI AL S + I++ +++ +N I G+
Sbjct: 70 KQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFS 129
Query: 98 KNHGHNEALELFSNMYYSNV---SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154
++ E+ L+ M PD FT + K+ +++ ++G +I G +K+ +
Sbjct: 130 ESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLEL 189
Query: 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFD 214
+ N+ + M+ CG +FDE P R++ SWN
Sbjct: 190 VSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWN----------------------- 226
Query: 215 QMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLS 274
+INGY + G+ ++A+ ++ M+ + ++P+ V+++ ++ +CS L L+
Sbjct: 227 -----------CLINGYKKIGEAEKAIYVYKLME-SEGVKPDDVTMIGLVSSCSMLGDLN 274
Query: 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334
GK+ + + L + L NAL+DM+SKCG + ARR+F D+ + ++W++++SGY
Sbjct: 275 RGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF-DNLEKRTIVSWTTMISGY 333
Query: 335 GLHG-------------------------------KGHEAVLLYNKMVCLGSKPDIITIV 363
G +G +A+ L+ +M +KPD IT++
Sbjct: 334 ARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMI 393
Query: 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423
LSAC + G ++ G+ I+ I Y + + +VDM + G + AL +
Sbjct: 394 HCLSACSQLGALDVGIWIHR-YIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQT 452
Query: 424 EPSPSIWGALVSASVMHGNS 443
S + + A++ +HG++
Sbjct: 453 RNSLT-YTAIIGGLALHGDA 471
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 54 NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
N + T L+ YA CG +++ VF+ IQ ++ Y ++I G + + A+ F+ M
Sbjct: 423 NVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMI 482
Query: 114 YSNVSPDDFTL 124
+ ++PD+ T
Sbjct: 483 DAGIAPDEITF 493
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 168/485 (34%), Positives = 272/485 (56%), Gaps = 38/485 (7%)
Query: 59 TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS 118
T LI YA G +Q +F+ I KDV +N++I+GY + + EALELF +M +NV
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178
PD+ T+ T+ + + +G +H GF ++ + N+L+ +Y KCG+ L
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238
F+ +P ++V S W +I GY
Sbjct: 324 FERLPYKDVIS----------------------------------WNTLIGGYTHMNLYK 349
Query: 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLCN 296
EAL+LF EM L+ PN V+++S+LP C+ L + G+ IH + + K + + SL
Sbjct: 350 EALLLFQEM-LRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRT 408
Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
+LIDMY+KCG ++ A +VF +S +K +W++++ G+ +HG+ + L+++M +G +
Sbjct: 409 SLIDMYAKCGDIEAAHQVF-NSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467
Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
PD IT VG+LSAC SG+++ G I+ ++ Y++ P E C++D+LG +G A +
Sbjct: 468 PDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEE 527
Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476
I M +EP IW +L+ A MHGN E+ + ++LI++EPENP +YV LSN+YAS+ R
Sbjct: 528 MINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGR 587
Query: 477 WDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRG 536
W+ VA+ R ++ D+G+KK PGCS I I H F + DK HP + IY ML+++ +++
Sbjct: 588 WNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEK 647
Query: 537 AAASP 541
A P
Sbjct: 648 AGFVP 652
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 237/436 (54%), Gaps = 22/436 (5%)
Query: 16 RNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC----GQP 71
RN+ S ++ H + T +SL++ H+Q++ +G + + +KLI L G P
Sbjct: 32 RNHPSLSLLHNCK---TLQSLRII---HAQMIKIGLHNTNYALSKLIEFCILSPHFEGLP 85
Query: 72 TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131
VF +IQ ++ ++N++ G+ + AL+L+ M + P+ +T + K
Sbjct: 86 YAIS-VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSC 144
Query: 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWN 191
+ K G IHG +K+G +D+ + SL+SMYV+ G+ + +FD+ P R+V S+
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYT 204
Query: 192 VRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251
I G+AS G + ++++FD++ ++V +W AMI+GY + G+ EAL LF +M +K
Sbjct: 205 ALIKGYASRG---YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM-MKT 260
Query: 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311
+ P++ ++V+V+ C+ + G+Q+H + ++ + NALID+YSKCG L+ A
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETA 320
Query: 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371
+FE + KD I+W++++ GY EA+LL+ +M+ G P+ +T++ +L AC
Sbjct: 321 CGLFERLPY-KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 379
Query: 372 SGLINEGLEIYNSVINTYRIKPTTE---ICACVVDMLGRAGQLDRALDFIKTMPVEPSPS 428
G I+ G I+ V R+K T + ++DM + G ++ A ++ + S S
Sbjct: 380 LGAIDIGRWIH--VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLS 436
Query: 429 IWGALVSASVMHGNSE 444
W A++ MHG ++
Sbjct: 437 SWNAMIFGFAMHGRAD 452
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 302 bits (773), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 170/508 (33%), Positives = 276/508 (54%), Gaps = 39/508 (7%)
Query: 26 FLQVSATHRSLKLT-KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF--NSIQ 82
F+ S SL ++ +Q H + G + PFV T LI+ Y CG ++ VF N
Sbjct: 58 FILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQS 117
Query: 83 HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML 142
+ YN+LI+GY N +A +F M + VS D T+ + L + L +G
Sbjct: 118 SQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRS 177
Query: 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202
+HG +K G +V + NS ++MY+KCG
Sbjct: 178 LHGQCVKGGLDSEVAVLNSFITMYMKCGS------------------------------- 206
Query: 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVS 262
V RR+FD+M + + W A+I+GY QNG + L L+ +M+ + P+ +LVS
Sbjct: 207 ---VEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMK-SSGVCPDPFTLVS 262
Query: 263 VLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322
VL +C+ L G ++ +V + NA I MY++CG+L AR VF D K
Sbjct: 263 VLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVF-DIMPVK 321
Query: 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382
++W++++ YG+HG G ++L++ M+ G +PD V VLSAC SGL ++GLE++
Sbjct: 322 SLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELF 381
Query: 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
++ Y+++P E +C+VD+LGRAG+LD A++FI++MPVEP ++WGAL+ A +H N
Sbjct: 382 RAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKN 441
Query: 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWIS 502
+M +LA+ +I+ EP N YV +SN+Y+ S+ + + +R MM++R +K PG S++
Sbjct: 442 VDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVE 501
Query: 503 IHGKTHCFSVADKAHPCSVSIYEMLDDL 530
G+ H F D++H + ++ MLD+L
Sbjct: 502 HKGRVHLFLAGDRSHEQTEEVHRMLDEL 529
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 183/396 (46%), Gaps = 38/396 (9%)
Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
+E++ L+ +M S SPD F+ I K + G +H K G + + +L
Sbjct: 35 SESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTAL 94
Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
+SMY KCG ++ +F+E PQ S S+
Sbjct: 95 ISMYCKCGLVADARKVFEENPQ---------------SSQLSV----------------- 122
Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
+ A+I+GY N + +A +F M+ + + + V+++ ++P C+ L G+ +HG
Sbjct: 123 CYNALISGYTANSKVTDAAYMFRRMK-ETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQ 181
Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
++ L+ +V++ N+ I MY KCGS++ RR+F++ K ITW++++SGY +G ++
Sbjct: 182 CVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPV-KGLITWNAVISGYSQNGLAYD 240
Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
+ LY +M G PD T+V VLS+C G G E+ ++ + P + +
Sbjct: 241 VLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEV-GKLVESNGFVPNVFVSNASI 299
Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ--LEPEN 460
M R G L +A MPV+ S W A++ MHG E+ + + +I+ + P+
Sbjct: 300 SMYARCGNLAKARAVFDIMPVKSLVS-WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDG 358
Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
+ LS S + R M ++ L+ P
Sbjct: 359 AVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGP 394
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 141/344 (40%), Gaps = 46/344 (13%)
Query: 14 TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73
T + S T+ + + L L + H Q + G S V IT Y CG
Sbjct: 150 TGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEA 209
Query: 74 SQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133
+ +F+ + K + +N++I+GY +N + LEL+ M S V PD FTL ++
Sbjct: 210 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAH 269
Query: 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVR 193
+ +G + L GFV +V ++N+ +SMY +CG ++ +FD MP +++ SW
Sbjct: 270 LGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSW--- 326
Query: 194 ISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253
TAMI Y +G + L+LF +M +K I
Sbjct: 327 -------------------------------TAMIGCYGMHGMGEIGLMLFDDM-IKRGI 354
Query: 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL------CNALIDMYSKCGS 307
P+ V VL CS G G + + + + L + L+D+ + G
Sbjct: 355 RPDGAVFVMVLSACS-----HSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGR 409
Query: 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV 351
LD A E D W +++ +H A L + K++
Sbjct: 410 LDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVI 453
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 301 bits (772), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 176/544 (32%), Positives = 281/544 (51%), Gaps = 45/544 (8%)
Query: 7 RNTFALVTSRNYTSATVQHFLQVSATHRS-LKLTKQSHSQILSLGHISNPFVSTKLITAY 65
+ +++ + S L + HRS L + H IL G +PF++TKLI Y
Sbjct: 63 KQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMY 122
Query: 66 ALCGQPTQSQLVFNSIQHKDVYLYNSLINGY-VKNHGHNEALELFSNMYYSNVSPDDFTL 124
+ G ++ VF+ + + +Y++N+L + HG E L L+ M V D FT
Sbjct: 123 SDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHG-EEVLGLYWKMNRIGVESDRFTY 181
Query: 125 ATISK--LSGE--IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD 180
+ K ++ E + L G IH + G+ V + +L+ MY +
Sbjct: 182 TYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYAR------------ 229
Query: 181 EMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240
F V + VF M RNV +W+AMI Y +NG EA
Sbjct: 230 ----------------------FGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEA 267
Query: 241 LVLFLEM--QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298
L F EM + KD PN V++VSVL C+SL L GK IHG+ +R+ L+ + + +AL
Sbjct: 268 LRTFREMMRETKDS-SPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISAL 326
Query: 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358
+ MY +CG L+ +RVF D ++D ++W+S++S YG+HG G +A+ ++ +M+ G+ P
Sbjct: 327 VTMYGRCGKLEVGQRVF-DRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPT 385
Query: 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418
+T V VL AC GL+ EG ++ ++ + IKP E AC+VD+LGRA +LD A +
Sbjct: 386 PVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMV 445
Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
+ M EP P +WG+L+ + +HGN E+ + A + L LEP+N NYV L+++YA ++ WD
Sbjct: 446 QDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWD 505
Query: 479 AVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
V ++ +++ RGL+K PG W+ + K + F D+ +P I+ L L M+
Sbjct: 506 EVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKG 565
Query: 539 ASPH 542
P
Sbjct: 566 YIPQ 569
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 301 bits (772), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 168/489 (34%), Positives = 268/489 (54%), Gaps = 36/489 (7%)
Query: 43 HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
HS + G S FVS KLI YA G+ Q VF+ + +D+ +NS+I Y N
Sbjct: 270 HSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQP 329
Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG-FVVDVILANS 161
A+ LF M S + PD TL +++ + ++ D+ + G +++ G F+ D+ + N+
Sbjct: 330 LRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNA 389
Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV 221
++ MY K G LV +R VF+ + +V
Sbjct: 390 VVVMYAKLG----------------------------------LVDSARAVFNWLPNTDV 415
Query: 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
+W +I+GY QNG EA+ ++ M+ + I N+ + VSVLP CS L G ++HG
Sbjct: 416 ISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHG 475
Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
++ L DV + +L DMY KCG L+ A +F +++ W+++++ +G HG G
Sbjct: 476 RLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGE 534
Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
+AV+L+ +M+ G KPD IT V +LSAC SGL++EG + + Y I P+ + C+
Sbjct: 535 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCM 594
Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461
VDM GRAGQL+ AL FIK+M ++P SIWGAL+SA +HGN ++ +A + L ++EPE+
Sbjct: 595 VDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHV 654
Query: 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSV 521
+V LSN+YAS+ +W+ V E+R++ +GL+K+PG S + + K F ++ HP
Sbjct: 655 GYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYE 714
Query: 522 SIYEMLDDL 530
+Y L L
Sbjct: 715 EMYRELTAL 723
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 193/408 (47%), Gaps = 45/408 (11%)
Query: 35 SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94
+L+ K H++++ I N +S KL+ Y G ++ F+ IQ++DVY +N +I+
Sbjct: 66 NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125
Query: 95 GYVKNHGHNEALELFS-NMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153
GY + +E + FS M S ++PD T ++ K + D G IH L++K GF+
Sbjct: 126 GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFM 182
Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
DV +A SL+ +Y + + V +R +F
Sbjct: 183 WDVYVAASLIHLYSR----------------------------------YKAVGNARILF 208
Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
D+M R++ +W AMI+GY Q+G+ EAL L ++ D V++VS+L C+
Sbjct: 209 DEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD-----SVTVVSLLSACTEAGDF 263
Query: 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSG 333
+ G IH ++I+ L ++ + N LID+Y++ G L ++VF D + +D I+W+SI+
Sbjct: 264 NRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVF-DRMYVRDLISWNSIIKA 322
Query: 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393
Y L+ + A+ L+ +M +PD +T++ + S + G I + +
Sbjct: 323 YELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLE 382
Query: 394 TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
I VV M + G +D A +P S W ++S +G
Sbjct: 383 DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVIS-WNTIISGYAQNG 429
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 12/183 (6%)
Query: 28 QVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVY 87
Q A + +KL H ++L G + FV T L Y CG+ + +F I +
Sbjct: 463 QAGALRQGMKL----HGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSV 518
Query: 88 LYNSLI--NGYVKNHGHNE-ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGML-I 143
+N+LI +G+ HGH E A+ LF M V PD T T+ ++ G
Sbjct: 519 PWNTLIACHGF---HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCF 575
Query: 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSWNVRISGHASSGD 202
+ G + ++ MY + G+ L M Q + W +S G+
Sbjct: 576 EMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGN 635
Query: 203 FSL 205
L
Sbjct: 636 VDL 638
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 301 bits (771), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 177/529 (33%), Positives = 285/529 (53%), Gaps = 26/529 (4%)
Query: 34 RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ----SQLVFNSIQHKDVYLY 89
R+++ Q H+ + G + + + +++ A + + +FN + ++ + +
Sbjct: 34 RTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSW 93
Query: 90 NSLINGYVKNHGHNE--ALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
N++I G+ ++ A+ LF M V P+ FT ++ K + + G IHGL
Sbjct: 94 NTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGL 153
Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE---------MPQR-----NVGSWNV 192
++K GF D + ++L+ MYV CG + LF + M R + WNV
Sbjct: 154 ALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNV 213
Query: 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252
I G+ GD +R +FD+M++R+V +W MI+GY NG +A+ +F EM+ D
Sbjct: 214 MIDGYMRLGDCKA---ARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD- 269
Query: 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312
I PN V+LVSVLP S L L G+ +H +A + D L +ALIDMYSKCG ++ A
Sbjct: 270 IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAI 329
Query: 313 RVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372
VFE ++ ITWS++++G+ +HG+ +A+ + KM G +P + + +L+AC
Sbjct: 330 HVFERLP-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHG 388
Query: 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432
GL+ EG ++ +++ ++P E C+VD+LGR+G LD A +FI MP++P IW A
Sbjct: 389 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKA 448
Query: 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492
L+ A M GN EM L+ + P + YV+LSN+YAS W V+E+R MK++ +
Sbjct: 449 LLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDI 508
Query: 493 KKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
+K PGCS I I G H F V D +HP + I ML ++ +R A P
Sbjct: 509 RKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRP 557
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/363 (19%), Positives = 143/363 (39%), Gaps = 81/363 (22%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC------------- 68
T L+ A ++ KQ H L G + FV + L+ Y +C
Sbjct: 130 TFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKN 189
Query: 69 --------------------------------GQPTQSQLVFNSIQHKDVYLYNSLINGY 96
G ++++F+ ++ + V +N++I+GY
Sbjct: 190 IIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 249
Query: 97 VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156
N +A+E+F M ++ P+ TL ++ + L +G +H + G +D
Sbjct: 250 SLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDD 309
Query: 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216
+L ++L+ MY KCG + +++F+ +P+ NV +W
Sbjct: 310 VLGSALIDMYSKCGIIEKAIHVFERLPRENVITW-------------------------- 343
Query: 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276
+AMING+ +G +A+ F +M+ + + P+ V+ +++L CS + G
Sbjct: 344 --------SAMINGFAIHGQAGDAIDCFCKMR-QAGVRPSDVAYINLLTACSHGGLVEEG 394
Query: 277 KQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
++ + + L + ++D+ + G LD A + D + W +++
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACR 454
Query: 336 LHG 338
+ G
Sbjct: 455 MQG 457
>sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protein At5g65570
OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1
Length = 738
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 174/497 (35%), Positives = 278/497 (55%), Gaps = 40/497 (8%)
Query: 37 KLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLING 95
K ++SH + LG +SN FV + L+ Y G+ +++LV + ++ KDV L +LI G
Sbjct: 182 KEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVG 241
Query: 96 YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD 155
Y + EA++ F +M V P+++T A++ G +KD+ G LIHGL +K GF
Sbjct: 242 YSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESA 301
Query: 156 VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215
+ SL++MY++C SLV S RVF
Sbjct: 302 LASQTSLLTMYLRC----------------------------------SLVDDSLRVFKC 327
Query: 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275
++ N +WT++I+G VQNG + AL+ F +M ++D I+PN +L S L CS+L
Sbjct: 328 IEYPNQVSWTSLISGLVQNGREEMALIEFRKM-MRDSIKPNSFTLSSALRGCSNLAMFEE 386
Query: 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYG 335
G+QIHG + + D + LID+Y KCG D AR VF D+ D I+ ++++ Y
Sbjct: 387 GRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVF-DTLSEVDVISLNTMIYSYA 445
Query: 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
+G G EA+ L+ +M+ LG +P+ +T++ VL AC S L+ EG E+++S +I T
Sbjct: 446 QNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDS-FRKDKIMLTN 504
Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
+ AC+VD+LGRAG+L+ A + + T + P +W L+SA +H EM + + +++
Sbjct: 505 DHYACMVDLLGRAGRLEEA-EMLTTEVINPDLVLWRTLLSACKVHRKVEMAERITRKILE 563
Query: 456 LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADK 515
+EP + + +SNLYAS+ +W+ V E+++ MKD LKK+P SW+ I+ +TH F D
Sbjct: 564 IEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDL 623
Query: 516 -AHPCSVSIYEMLDDLI 531
+HP S I E L++LI
Sbjct: 624 FSHPNSEQILENLEELI 640
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 169/513 (32%), Positives = 284/513 (55%), Gaps = 37/513 (7%)
Query: 30 SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLY 89
S+ L L+KQ H + + ++S+ FVST LI AY+ +++++F + D+ +
Sbjct: 427 SSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAW 485
Query: 90 NSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149
N+++ GY ++H ++ L+LF+ M+ DDFTLAT+ K G + +N G +H +IK
Sbjct: 486 NAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIK 545
Query: 150 IGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRS 209
G+ +D+ +++ ++ MYVKCG S FD +P
Sbjct: 546 SGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIP-------------------------- 579
Query: 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269
V D + AWT MI+G ++NG+ + A +F +M+L + P++ ++ ++ S
Sbjct: 580 --VPDDV------AWTTMISGCIENGEEERAFHVFSQMRLMG-VLPDEFTIATLAKASSC 630
Query: 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSS 329
L L G+QIH A++ +D + +L+DMY+KCGS+D A +F+ + W++
Sbjct: 631 LTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNA 689
Query: 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389
++ G HG+G E + L+ +M LG KPD +T +GVLSAC SGL++E + S+ Y
Sbjct: 690 MLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDY 749
Query: 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLA 449
IKP E +C+ D LGRAG + +A + I++M +E S S++ L++A + G++E
Sbjct: 750 GIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRV 809
Query: 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509
L++LEP + S YV LSN+YA++ +WD + RTMMK +KK PG SWI + K H
Sbjct: 810 ATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHI 869
Query: 510 FSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542
F V D+++ + IY + D+I ++ P
Sbjct: 870 FVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPE 902
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 208/444 (46%), Gaps = 53/444 (11%)
Query: 43 HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
H +G + FV+ L+ Y G+ + +++F + ++DV L+N ++ Y++
Sbjct: 168 HGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFK 227
Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL-NVGMLIHGLSIKIGFVVDVILANS 161
EA++L S + S ++P++ TL ++++SG+ D V +G V ++I N
Sbjct: 228 EEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASS--VSEIIFRNK 285
Query: 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG-------------------- 201
+S Y+ G++S L F +M + +V V ++
Sbjct: 286 GLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLG 345
Query: 202 -DFSLVVR---------------SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFL 245
D L V +R VFD M R++ +W ++I G QNG EA+ LF+
Sbjct: 346 LDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFM 405
Query: 246 EMQLKDRIEPNKVSLVSVLPTCSSLI-GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304
++ L+ ++P++ ++ SVL SSL GLS KQ+H AI+ D + ALID YS+
Sbjct: 406 QL-LRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSR 464
Query: 305 CGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364
+ A +FE +F D + W+++++GY GH+ + L+ M G + D T+
Sbjct: 465 NRCMKEAEILFERHNF--DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLAT 522
Query: 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTE----ICACVVDMLGRAGQLDRALDFIKT 420
V CG IN+G +++ Y IK + + + ++DM + G + A +
Sbjct: 523 VFKTCGFLFAINQGKQVH-----AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDS 577
Query: 421 MPVEPSPSIWGALVSASVMHGNSE 444
+PV P W ++S + +G E
Sbjct: 578 IPV-PDDVAWTTMISGCIENGEEE 600
Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 106/400 (26%), Positives = 188/400 (47%), Gaps = 45/400 (11%)
Query: 26 FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD 85
FL+ + T L L K +H++IL+ F+ LI+ Y+ CG T ++ VF+ + +D
Sbjct: 45 FLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRD 104
Query: 86 VYLYNSLINGYVKN-----HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
+ +NS++ Y ++ +A LF + V TL+ + KL +
Sbjct: 105 LVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWAS 164
Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
HG + KIG D +A +L+++Y+K GK E LF+EMP R+V WN+ + +
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEM 224
Query: 201 G--------------------DFSLVVRSRRVFDQMKRRNVYAWT--------------- 225
G + +L + +R D V ++
Sbjct: 225 GFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRN 284
Query: 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285
++ Y+ +G L F +M D +E ++V+ + +L T + L+ G+Q+H A++
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESD-VECDQVTFILMLATAVKVDSLALGQQVHCMALK 343
Query: 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVL 345
L+ +++ N+LI+MY K AR VF++ S +D I+W+S+++G +G EAV
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMS-ERDLISWNSVIAGIAQNGLEVEAVC 402
Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385
L+ +++ G KPD T+ VL A + EGL + V
Sbjct: 403 LFMQLLRCGLKPDQYTMTSVLKAASS---LPEGLSLSKQV 439
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T+ + S+ +L+ +Q H+ L L ++PFV T L+ YA CG + +F I
Sbjct: 620 TIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRI 679
Query: 82 QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124
+ ++ +N+++ G ++ E L+LF M + PD T
Sbjct: 680 EMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTF 722
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 300 bits (767), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 181/556 (32%), Positives = 294/556 (52%), Gaps = 43/556 (7%)
Query: 19 TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78
T TV L SA ++ KQSH+ + G + + T L+ Y G +++VF
Sbjct: 273 TRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVF 332
Query: 79 NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
+ + KDV +N +I+GYV+ +A+ + M + D TLAT+ + ++L
Sbjct: 333 DRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLK 392
Query: 139 VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHA 198
+G + I+ F D++LA+++M MY KCG + +FD ++++ WN ++ +A
Sbjct: 393 LGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 452
Query: 199 SSG----------------------DFSLVV----------RSRRVFDQMKRR----NVY 222
SG ++L++ ++ +F QM+ N+
Sbjct: 453 ESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLI 512
Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
+WT M+NG VQNG +EA++ +MQ + + PN S+ L C+ L L G+ IHG+
Sbjct: 513 SWTTMMNGMVQNGCSEEAILFLRKMQ-ESGLRPNAFSITVALSACAHLASLHIGRTIHGY 571
Query: 283 AIRKELNHD--VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKG 340
IR L H VS+ +L+DMY+KCG ++ A +VF +++ ++ ++++S Y L+G
Sbjct: 572 IIRN-LQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLS-NAMISAYALYGNL 629
Query: 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC 400
EA+ LY + +G KPD ITI VLSAC +G IN+ +EI+ +++ +KP E
Sbjct: 630 KEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGL 689
Query: 401 VVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460
+VD+L AG+ ++AL I+ MP +P + +LV++ +E+ D + L++ EPEN
Sbjct: 690 MVDLLASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPEN 749
Query: 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGK--THCFSVADKAHP 518
NYV++SN YA WD V ++R MMK +GLKK PGCSWI I G+ H F DK H
Sbjct: 750 SGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHT 809
Query: 519 CSVSIYEMLDDLILIM 534
I ML L+ M
Sbjct: 810 RINEIQMMLALLLYDM 825
Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 134/489 (27%), Positives = 224/489 (45%), Gaps = 49/489 (10%)
Query: 7 RNTFALVTSRNYTSATVQ-----HFLQVSATHRSLKLTKQSHSQILSLG--HISNPFVST 59
+ +LVT ++ + + LQ R L KQ H++IL G + N ++ T
Sbjct: 52 KEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIET 111
Query: 60 KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
KL+ YA C ++++F+ ++ ++V+ + ++I + AL F M + + P
Sbjct: 112 KLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFP 171
Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
D+F + + K G +K G +HG +K G V +A+SL MY KCG + +F
Sbjct: 172 DNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVF 231
Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
DE+P RN +WN + G YVQNG +E
Sbjct: 232 DEIPDRNAVAWNALMVG----------------------------------YVQNGKNEE 257
Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
A+ LF +M+ K +EP +V++ + L +++ G+ GKQ H AI + D L +L+
Sbjct: 258 AIRLFSDMR-KQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLL 316
Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
+ Y K G ++ A VF D F KD +TW+ I+SGY G +A+ + M K D
Sbjct: 317 NFYCKVGLIEYAEMVF-DRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDC 375
Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419
+T+ ++SA R+ + G E+ I + + + + V+DM + G + A
Sbjct: 376 VTLATLMSAAARTENLKLGKEVQCYCIR-HSFESDIVLASTVMDMYAKCGSIVDAKKVFD 434
Query: 420 TMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478
+ VE +W L++A G S E L Y +QLE P N ++ + + S R
Sbjct: 435 S-TVEKDLILWNTLLAAYAESGLSGEALRLFYG--MQLEGV-PPNVITWNLIILSLLRNG 490
Query: 479 AVAELRTMM 487
V E + M
Sbjct: 491 QVDEAKDMF 499
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 14/223 (6%)
Query: 228 INGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286
++ +NG++ EAL L EM ++ RI P +L C LS GKQIH ++
Sbjct: 42 VSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYG--EILQGCVYERDLSTGKQIHARILK- 98
Query: 287 ELNHDVSLCNALID-----MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
N D N I+ Y+KC +L+ A +F ++ +W++I+ G
Sbjct: 99 --NGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRV-RNVFSWAAIIGVKCRIGLCE 155
Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401
A++ + +M+ PD + V ACG G ++ V+ + ++ + + +
Sbjct: 156 GALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKS-GLEDCVFVASSL 214
Query: 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444
DM G+ G LD A +P + + W AL+ V +G +E
Sbjct: 215 ADMYGKCGVLDDASKVFDEIP-DRNAVAWNALMVGYVQNGKNE 256
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 299 bits (765), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 167/511 (32%), Positives = 281/511 (54%), Gaps = 40/511 (7%)
Query: 31 ATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYN 90
A+ +L Q H+ + ++ +V+ LI YA C T ++ VF+ DV L+N
Sbjct: 361 ASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFN 420
Query: 91 SLINGYVK---NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS 147
++I GY + +EAL +F +M + + P T ++ + S + L + IHGL
Sbjct: 421 AMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLM 480
Query: 148 IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVV 207
K G +D+ ++L+ +Y C CL
Sbjct: 481 FKYGLNLDIFAGSALIDVYSNC----YCLK------------------------------ 506
Query: 208 RSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267
SR VFD+MK +++ W +M GYVQ + +EAL LFLE+QL R P++ + +++
Sbjct: 507 DSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQL-SRERPDEFTFANMVTAA 565
Query: 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITW 327
+L + G++ H +++ L + + NAL+DMY+KCGS + A + F DS+ ++D + W
Sbjct: 566 GNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAF-DSAASRDVVCW 624
Query: 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387
+S++S Y HG+G +A+ + KM+ G +P+ IT VGVLSAC +GL+ +GL+ + ++
Sbjct: 625 NSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR 684
Query: 388 TYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447
+ I+P TE C+V +LGRAG+L++A + I+ MP +P+ +W +L+S GN E+ +
Sbjct: 685 -FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAE 743
Query: 448 LAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKT 507
A + I +P++ ++ LSN+YAS W ++R MK G+ K PG SWI I+ +
Sbjct: 744 HAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEV 803
Query: 508 HCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538
H F DK+H + IYE+LDDL++ +RG +
Sbjct: 804 HIFLSKDKSHCKANQIYEVLDDLLVQIRGVS 834
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 120/463 (25%), Positives = 215/463 (46%), Gaps = 48/463 (10%)
Query: 41 QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNH 100
Q S ++ G + +V T LI Y G ++LVF+++ K + ++I+G VK
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228
Query: 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160
+L+LF + NV PD + L+T+ + L G IH ++ G +D L N
Sbjct: 229 RSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMN 288
Query: 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
L+ YVKCG+ V+ + ++F+ M +N
Sbjct: 289 VLIDSYVKCGR----------------------------------VIAAHKLFNGMPNKN 314
Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIH 280
+ +WT +++GY QN EA+ LF M K ++P+ + S+L +C+SL L G Q+H
Sbjct: 315 IISWTTLLSGYKQNALHKEAMELFTSMS-KFGLKPDMYACSSILTSCASLHALGFGTQVH 373
Query: 281 GFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY---GLH 337
+ I+ L +D + N+LIDMY+KC L AR+VF D D + +++++ GY G
Sbjct: 374 AYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVF-DIFAAADVVLFNAMIEGYSRLGTQ 432
Query: 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL-EIYNSVINTYRIKPTTE 396
+ HEA+ ++ M +P ++T V +L A + L + GL + + ++ Y +
Sbjct: 433 WELHEALNIFRDMRFRLIRPSLLTFVSLLRAS--ASLTSLGLSKQIHGLMFKYGLNLDIF 490
Query: 397 ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456
+ ++D+ L + M V+ IW ++ + V +E + L +QL
Sbjct: 491 AGSALIDVYSNCYCLKDSRLVFDEMKVK-DLVIWNSMFAGYVQQSENE-EALNLFLELQL 548
Query: 457 EPENPSNYVSLSNLYASSRRWDAV---AELRTMMKDRGLKKSP 496
E P + + +N+ ++ +V E + RGL+ +P
Sbjct: 549 SRERPDEF-TFANMVTAAGNLASVQLGQEFHCQLLKRGLECNP 590
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 144/316 (45%), Gaps = 43/316 (13%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T L+ SA+ SL L+KQ H + G + F + LI Y+ C S+LVF+ +
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEM 515
Query: 82 QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
+ KD+ ++NS+ GYV+ + EAL LF + S PD+FT A + +G + + +G
Sbjct: 516 KVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQ 575
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
H +K G + + N+L+ MY KCG + FD R+V WN
Sbjct: 576 EFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWN---------- 625
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
++I+ Y +G+ +AL + LE + + IEPN ++ V
Sbjct: 626 ------------------------SVISSYANHGEGKKALQM-LEKMMSEGIEPNYITFV 660
Query: 262 SVLPTCS--SLI--GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317
VL CS L+ GL + + F I E H V ++ + + G L+ AR + E
Sbjct: 661 GVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYV----CMVSLLGRAGRLNKARELIEK 716
Query: 318 SSFNKDAITWSSIVSG 333
AI W S++SG
Sbjct: 717 MPTKPAAIVWRSLLSG 732
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 180/394 (45%), Gaps = 42/394 (10%)
Query: 25 HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK 84
LQ+ A+ L H QI+ G + ++S LI Y+ G ++ VF + +
Sbjct: 49 RLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPER 108
Query: 85 DVYLYNSLINGYVKNHG-HNEALELFSNMYYSNV-SPDDFTLATISKLSGEIKDLNVGML 142
++ ++++++ +HG + E+L +F + + SP+++ L++ + + M+
Sbjct: 109 NLVSWSTMVSA-CNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMV 167
Query: 143 --IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
+ +K GF DV + L+ Y+K G +FD +P+++ +W
Sbjct: 168 FQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTW---------- 217
Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
T MI+G V+ G +L LF ++ ++D + P+ L
Sbjct: 218 ------------------------TTMISGCVKMGRSYVSLQLFYQL-MEDNVVPDGYIL 252
Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF 320
+VL CS L L GGKQIH +R L D SL N LID Y KCG + A ++F
Sbjct: 253 STVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP- 311
Query: 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380
NK+ I+W++++SGY + EA+ L+ M G KPD+ +L++C + G +
Sbjct: 312 NKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQ 371
Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414
++ I + + + ++DM + L A
Sbjct: 372 VHAYTIKA-NLGNDSYVTNSLIDMYAKCDCLTDA 404
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 138/297 (46%), Gaps = 39/297 (13%)
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
++HG I G +D L+N L+++Y + G
Sbjct: 65 VVHGQIIVWGLELDTYLSNILINLYSRAGG------------------------------ 94
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
+V +R+VF++M RN+ +W+ M++ +G +E+LV+FLE + PN+ L
Sbjct: 95 ----MVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILS 150
Query: 262 SVLPTCSSLIGLSGGK--QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319
S + CS L G Q+ F ++ + DV + LID Y K G++D AR VF D+
Sbjct: 151 SFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVF-DAL 209
Query: 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379
K +TW++++SG G+ + ++ L+ +++ PD + VLSAC + G
Sbjct: 210 PEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGK 269
Query: 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
+I+ ++ Y ++ + ++D + G++ A MP + S W L+S
Sbjct: 270 QIHAHILR-YGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIIS-WTTLLSG 324
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 15/203 (7%)
Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
+HG I L D L N LI++YS+ G + AR+VFE ++ ++WS++VS HG
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMP-ERNLVSWSTMVSACNHHG 124
Query: 339 KGHEAVLLYNKMV-CLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE- 396
E+++++ + P+ + + AC SGL G + + ++ +K +
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQAC--SGLDGRGRWMVFQ-LQSFLVKSGFDR 181
Query: 397 ---ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453
+ ++D + G +D A +P E S W ++S V G S ++ +
Sbjct: 182 DVYVGTLLIDFYLKDGNIDYARLVFDALP-EKSTVTWTTMISGCVKMGRSY---VSLQLF 237
Query: 454 IQLEPEN--PSNYVSLSNLYASS 474
QL +N P Y+ + L A S
Sbjct: 238 YQLMEDNVVPDGYILSTVLSACS 260
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 298 bits (764), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 166/520 (31%), Positives = 270/520 (51%), Gaps = 36/520 (6%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
TV L+ R L L K ++ +L G + V LI YA CG ++ VFNS+
Sbjct: 309 TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSM 368
Query: 82 QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
+ KD +NS+I+GY+++ EA++LF M D T + +S + DL G
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGK 428
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
+H IK G +D+ ++N+L+ MY KCG+ + L +F M +G
Sbjct: 429 GLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSM----------------GTG 472
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
D W +I+ V+ GD L + +M+ K + P+ + +
Sbjct: 473 D------------------TVTWNTVISACVRFGDFATGLQVTTQMR-KSEVVPDMATFL 513
Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
LP C+SL GK+IH +R ++ + NALI+MYSKCG L+ + RVFE S
Sbjct: 514 VTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMS-R 572
Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381
+D +TW+ ++ YG++G+G +A+ + M G PD + + ++ AC SGL++EGL
Sbjct: 573 RDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLAC 632
Query: 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
+ + Y+I P E ACVVD+L R+ ++ +A +FI+ MP++P SIW +++ A G
Sbjct: 633 FEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSG 692
Query: 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501
+ E + + +I+L P++P + SN YA+ R+WD V+ +R +KD+ + K+PG SWI
Sbjct: 693 DMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWI 752
Query: 502 SIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541
+ H FS D + P S +IY+ L+ L +M P
Sbjct: 753 EVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIP 792
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/440 (27%), Positives = 222/440 (50%), Gaps = 41/440 (9%)
Query: 40 KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ-HKDVYLYNSLINGYVK 98
++ H+ ++SLG S+ F S KLI Y+ +P S VF + K+VYL+NS+I + K
Sbjct: 24 RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSK 83
Query: 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
N EALE + + S VSPD +T ++ K + D +G L++ + +GF D+ +
Sbjct: 84 NGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFV 143
Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR 218
N+L+ MY + G + +FDEMP R++ SWN ISG++S G +
Sbjct: 144 GNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY--------------- 188
Query: 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQ 278
+EAL ++ E++ I P+ ++ SVLP +L+ + G+
Sbjct: 189 -------------------EEALEIYHELK-NSWIVPDSFTVSSVLPAFGNLLVVKQGQG 228
Query: 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG 338
+HGFA++ +N V + N L+ MY K ARRVF++ +D++++++++ GY
Sbjct: 229 LHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDV-RDSVSYNTMICGYLKLE 287
Query: 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398
E+V ++ + + KPD++T+ VL ACG ++ IYN ++ + +T +
Sbjct: 288 MVEESVRMFLENLD-QFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLEST-VR 345
Query: 399 ACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458
++D+ + G + A D +M + + S W +++S + G+ M+ + ++ +
Sbjct: 346 NILIDVYAKCGDMITARDVFNSMECKDTVS-WNSIISGYIQSGDL-MEAMKLFKMMMIME 403
Query: 459 ENPSNYVSLSNLYASSRRWD 478
E + L + S+R D
Sbjct: 404 EQADHITYLMLISVSTRLAD 423
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 111/400 (27%), Positives = 206/400 (51%), Gaps = 39/400 (9%)
Query: 43 HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
+ QIL +G S+ FV L+ Y+ G T+++ VF+ + +D+ +NSLI+GY + +
Sbjct: 129 YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188
Query: 103 NEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162
EALE++ + S + PD FT++++ G + + G +HG ++K G V++ N L
Sbjct: 189 EEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGL 248
Query: 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222
++MY+K + ++ +FDEM R+ S+N
Sbjct: 249 VAMYLKFRRPTDARRVFDEMDVRDSVSYN------------------------------- 277
Query: 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282
MI GY++ ++E++ +FLE D+ +P+ +++ SVL C L LS K I+ +
Sbjct: 278 ---TMICGYLKLEMVEESVRMFLENL--DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNY 332
Query: 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE 342
++ + ++ N LID+Y+KCG + AR VF +S KD ++W+SI+SGY G E
Sbjct: 333 MLKAGFVLESTVRNILIDVYAKCGDMITARDVF-NSMECKDTVSWNSIISGYIQSGDLME 391
Query: 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402
A+ L+ M+ + + D IT + ++S R + G ++++ I + I + ++
Sbjct: 392 AMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKS-GICIDLSVSNALI 450
Query: 403 DMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442
DM + G++ +L +M + + W ++SA V G+
Sbjct: 451 DMYAKCGEVGDSLKIFSSMGTGDTVT-WNTVISACVRFGD 489
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 13/202 (6%)
Query: 21 ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
AT L + A+ + +L K+ H +L G+ S + LI Y+ CG S VF
Sbjct: 510 ATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFER 569
Query: 81 IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
+ +DV + +I Y +ALE F++M S + PD I + G
Sbjct: 570 MSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACS-----HSG 624
Query: 141 MLIHGLS----IKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMPQRNVGS-WNVR 193
++ GL+ +K + +D ++ + ++ + + K S+ MP + S W
Sbjct: 625 LVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASV 684
Query: 194 ISGHASSGDFSLVVR-SRRVFD 214
+ +SGD R SRR+ +
Sbjct: 685 LRACRTSGDMETAERVSRRIIE 706
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 298 bits (763), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 164/472 (34%), Positives = 261/472 (55%), Gaps = 18/472 (3%)
Query: 57 VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
V+ I Y C ++ VF+ ++ +D +N++I + +N E L LF +M S
Sbjct: 419 VANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 478
Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
+ PD+FT +I K + L GM IH +K G + + SL+ MY KCG E
Sbjct: 479 IEPDEFTFGSILK-ACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAE 537
Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
+ QR +SG + ++ ++ + +W ++I+GYV
Sbjct: 538 KIHSRFFQR------ANVSGTMEELE--------KMHNKRLQEMCVSWNSIISGYVMKEQ 583
Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
++A +LF M ++ I P+K + +VL TC++L GKQIH I+KEL DV +C+
Sbjct: 584 SEDAQMLFTRM-MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICS 642
Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
L+DMYSKCG L +R +FE S +D +TW++++ GY HGKG EA+ L+ +M+ K
Sbjct: 643 TLVDMYSKCGDLHDSRLMFE-KSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIK 701
Query: 357 PDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416
P+ +T + +L AC GLI++GLE + + Y + P + +VD+LG++G++ RAL+
Sbjct: 702 PNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALE 761
Query: 417 FIKTMPVEPSPSIWGALVSASVMHGNS-EMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475
I+ MP E IW L+ +H N+ E+ + A +L++L+P++ S Y LSN+YA +
Sbjct: 762 LIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAG 821
Query: 476 RWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
W+ V++LR M+ LKK PGCSW+ + + H F V DKAHP IYE L
Sbjct: 822 MWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEEL 873
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/489 (27%), Positives = 225/489 (46%), Gaps = 63/489 (12%)
Query: 27 LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV 86
L+ A L+L Q H+ L ++ V T + YA C +Q++F++ ++ +
Sbjct: 288 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNR 347
Query: 87 YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146
YN++I GY + +AL LF + S + D+ +L+ + + +K L+ G+ I+GL
Sbjct: 348 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGL 407
Query: 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206
+IK +DV +AN+ + MY KC +E +FDEM +R+ SWN I+ H
Sbjct: 408 AIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHE-------- 459
Query: 207 VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266
QNG E L LF+ M L+ RIEP++ + S+L
Sbjct: 460 --------------------------QNGKGYETLFLFVSM-LRSRIEPDEFTFGSILKA 492
Query: 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV------------ 314
C+ L G +IH ++ + + S+ +LIDMYSKCG ++ A ++
Sbjct: 493 CTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSG 551
Query: 315 -------FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367
+ + ++W+SI+SGY + + +A +L+ +M+ +G PD T VL
Sbjct: 552 TMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLD 611
Query: 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL-DRALDFIKTMPVEPS 426
C G +I+ VI ++ IC+ +VDM + G L D L F K++ +
Sbjct: 612 TCANLASAGLGKQIHAQVIKK-ELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFV 670
Query: 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW--DAVAELR 484
W A++ HG E ++ +I LE P++ +S L A + D E
Sbjct: 671 T--WNAMICGYAHHGKGEEAIQLFERMI-LENIKPNHVTFISILRACAHMGLIDKGLEYF 727
Query: 485 TMMK-DRGL 492
MMK D GL
Sbjct: 728 YMMKRDYGL 736
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/485 (25%), Positives = 228/485 (47%), Gaps = 94/485 (19%)
Query: 60 KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119
K+I Y+ ++ FN + +DV +NS+++GY++N +++E+F +M +
Sbjct: 119 KMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEF 178
Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
D T A I K+ ++D ++GM IHG+ +++G DV+ A++L+ MY K +F E L +F
Sbjct: 179 DGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVF 238
Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN------VYA---------- 223
+P++N SW+ I+G + SL + + F +M++ N +YA
Sbjct: 239 QGIPEKNSVSWSAIIAGCVQNNLLSLAL---KFFKEMQKVNAGVSQSIYASVLRSCAALS 295
Query: 224 -----------------------WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN---- 256
TA ++ Y + ++ +A +LF + +R N
Sbjct: 296 ELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMIT 355
Query: 257 --------------------------KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
++SL V C+ + GLS G QI+G AI+ L+
Sbjct: 356 GYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSL 415
Query: 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM 350
DV + NA IDMY KC +L A RVF D +DA++W++I++ + +GKG+E + L+ M
Sbjct: 416 DVCVANAAIDMYGKCQALAEAFRVF-DEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSM 474
Query: 351 VCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410
+ +PD T +L AC G + G+EI++S++ + ++ C+ ++DM + G
Sbjct: 475 LRSRIEPDEFTFGSILKAC-TGGSLGYGMEIHSSIVKSGMASNSSVGCS-LIDMYSKCGM 532
Query: 411 LDRA-------------------LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451
++ A L+ + ++ W +++S VM SE + +
Sbjct: 533 IEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFT 592
Query: 452 SLIQL 456
++++
Sbjct: 593 RMMEM 597
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 111/197 (56%), Gaps = 5/197 (2%)
Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
L +G H I GF + N L+ +Y F +FD+MP R+V SWN I+G
Sbjct: 64 LELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMING 123
Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
++ S D + ++ F+ M R+V +W +M++GY+QNG+ +++ +F++M ++ IE +
Sbjct: 124 YSKSND---MFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMG-REGIEFD 179
Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
+ +L CS L S G QIHG +R + DV +AL+DMY+K + RVF+
Sbjct: 180 GRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQ 239
Query: 317 DSSFNKDAITWSSIVSG 333
K++++WS+I++G
Sbjct: 240 GIP-EKNSVSWSAIIAG 255
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 6/173 (3%)
Query: 13 VTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72
+T +T ATV L A S L KQ H+Q++ S+ ++ + L+ Y+ CG
Sbjct: 599 ITPDKFTYATV---LDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLH 655
Query: 73 QSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSG 132
S+L+F +D +N++I GY + EA++LF M N+ P+ T +I +
Sbjct: 656 DSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACA 715
Query: 133 EIKDLNVGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSECLNLFDEMP 183
+ ++ G L + +K + +D L + +++ + K GK L L EMP
Sbjct: 716 HMGLIDKG-LEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMP 767
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 22/202 (10%)
Query: 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSSFN----KDAITWSSIVSGYGLHGKGHEAVL 345
DV N +I+ YSK + A +S FN +D ++W+S++SGY +G+ +++
Sbjct: 112 RDVVSWNKMINGYSKSNDMFKA-----NSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIE 166
Query: 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA--CVVD 403
++ M G + D T +L C + G++I+ V+ R+ T++ A ++D
Sbjct: 167 VFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVV---RVGCDTDVVAASALLD 223
Query: 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463
M + + +L + +P + S S W A+++ V + + LA K +++ N
Sbjct: 224 MYAKGKRFVESLRVFQGIPEKNSVS-WSAIIAGCV---QNNLLSLALKFFKEMQKVNAG- 278
Query: 464 YVSLSNLYASS-RRWDAVAELR 484
VS S +YAS R A++ELR
Sbjct: 279 -VSQS-IYASVLRSCAALSELR 298
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 298 bits (762), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 171/512 (33%), Positives = 274/512 (53%), Gaps = 39/512 (7%)
Query: 17 NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQL 76
NYT T L+ S + K H QIL ++ +P V L+ Y G + +
Sbjct: 247 NYTFDTA---LKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFK 303
Query: 77 VFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136
VFN + DV ++ +I + +N NEA++LF M + V P++FTL++I K
Sbjct: 304 VFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKC 363
Query: 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISG 196
+G +HGL +K+GF +D+ ++N+L+ +Y KC K + LF E+ +N S
Sbjct: 364 SGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVS------- 416
Query: 197 HASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN 256
W +I GY G+ +A +F E L++++
Sbjct: 417 ---------------------------WNTVIVGYENLGEGGKAFSMFRE-ALRNQVSVT 448
Query: 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316
+V+ S L C+SL + G Q+HG AI+ V++ N+LIDMY+KCG + A+ VF
Sbjct: 449 EVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFN 508
Query: 317 DSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376
+ D +W++++SGY HG G +A+ + + M KP+ +T +GVLS C +GLI+
Sbjct: 509 EME-TIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLID 567
Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
+G E + S+I + I+P E C+V +LGR+GQLD+A+ I+ +P EPS IW A++SA
Sbjct: 568 QGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSA 627
Query: 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496
S+ N E + + ++++ P++ + YV +SN+YA +++W VA +R MK+ G+KK P
Sbjct: 628 SMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEP 687
Query: 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLD 528
G SWI G H FSV HP I ML+
Sbjct: 688 GLSWIEHQGDVHYFSVGLSDHPDMKLINGMLE 719
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/471 (20%), Positives = 192/471 (40%), Gaps = 77/471 (16%)
Query: 39 TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVK 98
K H IL G + F + L+ AY G + +F+ + ++ + +L GY
Sbjct: 68 AKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGY-- 125
Query: 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL 158
+ + L+S ++ + + KL + + +H +K+G+ + +
Sbjct: 126 --ACQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFV 183
Query: 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR---------- 208
+L++ Y CG +F+ + +++ W +S + +G F ++
Sbjct: 184 GAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGF 243
Query: 209 --SRRVFDQMKRRNV----YAWTAMING--------------------YVQNGDLDEALV 242
+ FD + ++ + + ++G Y Q GD+ +A
Sbjct: 244 MPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFK 303
Query: 243 LFLEMQLKDRIE------------------------------PNKVSLVSVLPTCSSLIG 272
+F EM D + PN+ +L S+L C+ IG
Sbjct: 304 VFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCA--IG 361
Query: 273 -LSG-GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSI 330
SG G+Q+HG ++ + D+ + NALID+Y+KC +D A ++F + S +K+ ++W+++
Sbjct: 362 KCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELS-SKNEVSWNTV 420
Query: 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYR 390
+ GY G+G +A ++ + + +T L AC ++ G++++ I T
Sbjct: 421 IVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNN 480
Query: 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441
K + ++DM + G + A M S W AL+S HG
Sbjct: 481 AKKVA-VSNSLIDMYAKCGDIKFAQSVFNEMETIDVAS-WNALISGYSTHG 529
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 11 ALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQ 70
AL + T T L A+ S+ L Q H + + VS LI YA CG
Sbjct: 440 ALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGD 499
Query: 71 PTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130
+Q VFN ++ DV +N+LI+GY + +AL + M + P+ T + L
Sbjct: 500 IKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGV--L 557
Query: 131 SG 132
SG
Sbjct: 558 SG 559
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/486 (32%), Positives = 261/486 (53%), Gaps = 38/486 (7%)
Query: 21 ATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80
AT+ L V + L++ + H + V L+ Y CG+ +++ VF+
Sbjct: 219 ATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDR 278
Query: 81 IQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140
++ +DV + +INGY ++ ALEL M + V P+ T+A++ + G+ +N G
Sbjct: 279 MERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDG 338
Query: 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200
+HG +++ D+I+ SL+SMY KC + C
Sbjct: 339 KCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCF------------------------ 374
Query: 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260
RVF + + W+A+I G VQN + +AL LF M+ +D +EPN +L
Sbjct: 375 ----------RVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRRED-VEPNIATL 423
Query: 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF---ED 317
S+LP ++L L IH + + + L+ +YSKCG+L+ A ++F ++
Sbjct: 424 NSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQE 483
Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377
+KD + W +++SGYG+HG GH A+ ++ +MV G P+ IT L+AC SGL+ E
Sbjct: 484 KHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEE 543
Query: 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSAS 437
GL ++ ++ Y+ + C+VD+LGRAG+LD A + I T+P EP+ ++WGAL++A
Sbjct: 544 GLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAAC 603
Query: 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPG 497
V H N ++ ++A L +LEPEN NYV L+N+YA+ RW + ++R+MM++ GL+K PG
Sbjct: 604 VTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPG 663
Query: 498 CSWISI 503
S I I
Sbjct: 664 HSTIEI 669
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 135/490 (27%), Positives = 239/490 (48%), Gaps = 57/490 (11%)
Query: 2 ILSSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKL 61
+L A N AL + + Y S + HF A +S+ TK H +++ G +S +ST
Sbjct: 4 VLRRANN--ALSSVKQYQS-LLNHF----AATQSISKTKALHCHVITGGRVSGHILSTLS 56
Query: 62 ITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVS--P 119
+T YALCG T ++ +F + + YN +I YV+ +++A+ +F M V P
Sbjct: 57 VT-YALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVP 115
Query: 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179
D +T ++K +GE+K + +G+++HG ++ F D + N+L++MY+ GK ++F
Sbjct: 116 DGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVF 175
Query: 180 DEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDE 239
D M R+V SWN MI+GY +NG +++
Sbjct: 176 DVMKNRDVISWNT----------------------------------MISGYYRNGYMND 201
Query: 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299
AL++F + + + ++ + ++VS+LP C L L G+ +H K L + + NAL+
Sbjct: 202 ALMMF-DWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALV 260
Query: 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359
+MY KCG +D AR VF D +D ITW+ +++GY G A+ L M G +P+
Sbjct: 261 NMYLKCGRMDEARFVF-DRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNA 319
Query: 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD-FI 418
+TI ++S CG + +N+G ++ + ++ I ++ M + ++D F
Sbjct: 320 VTIASLVSVCGDALKVNDGKCLHGWAVRQ-QVYSDIIIETSLISMYAKCKRVDLCFRVFS 378
Query: 419 KTMPVEPSPSIWGALVSASVMHGNSEMQD-LAYKSLIQLEPENPSNYVSLSNLYASSRRW 477
P W A+++ V N + D L ++ E P N +L++L + +
Sbjct: 379 GASKYHTGP--WSAIIAGCVQ--NELVSDALGLFKRMRREDVEP-NIATLNSLLPA---Y 430
Query: 478 DAVAELRTMM 487
A+A+LR M
Sbjct: 431 AALADLRQAM 440
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 296 bits (757), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 171/525 (32%), Positives = 289/525 (55%), Gaps = 39/525 (7%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI 81
T L + +L+ KQ H I+ + F+++ LI AY C + +Q +F+
Sbjct: 342 TFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQC 401
Query: 82 QHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGM 141
DV ++ ++I+GY+ N + ++LE+F + +SP++ TL +I + G + L +G
Sbjct: 402 NSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGR 461
Query: 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG 201
+HG IK GF + +++ MY KCG+ +NL E
Sbjct: 462 ELHGFIIKKGFDNRCNIGCAVIDMYAKCGR----MNLAYE-------------------- 497
Query: 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261
+F+++ +R++ +W +MI Q+ + A+ +F +M + I + VS+
Sbjct: 498 ----------IFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSG-ICYDCVSIS 546
Query: 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321
+ L C++L S GK IHGF I+ L DV + LIDMY+KCG+L A VF+
Sbjct: 547 AALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK-E 605
Query: 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLE 380
K+ ++W+SI++ G HGK +++ L+++MV G +PD IT + ++S+C G ++EG+
Sbjct: 606 KNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVR 665
Query: 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440
+ S+ Y I+P E ACVVD+ GRAG+L A + +K+MP P +WG L+ A +H
Sbjct: 666 FFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLH 725
Query: 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500
N E+ ++A L+ L+P N YV +SN +A++R W++V ++R++MK+R ++K PG SW
Sbjct: 726 KNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSW 785
Query: 501 ISIHGKTHCFSVADKAHPCSVSIYEMLDDLI--LIMRGAAASPHL 543
I I+ +TH F D HP S IY +L+ L+ L + G P+L
Sbjct: 786 IEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIPQPYL 830
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/521 (24%), Positives = 236/521 (45%), Gaps = 84/521 (16%)
Query: 48 SLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107
SLG N FV++ LI AY G+ +F+ + KD ++N ++NGY K + ++
Sbjct: 166 SLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIK 225
Query: 108 LFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167
FS M +SP+ T + + +++G+ +HGL + G + + NSL+SMY
Sbjct: 226 GFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYS 285
Query: 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSG----------------------DFSL 205
KCG+F + LF M + + +WN ISG+ SG FS
Sbjct: 286 KCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSS 345
Query: 206 VVRSRRVFDQMK--------------RRNVYAWTAMINGYVQNGDLDEALVLF------- 244
++ S F+ ++ +++ +A+I+ Y + + A +F
Sbjct: 346 LLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVD 405
Query: 245 --------------------LEM---QLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281
LEM +K +I PN+++LVS+LP L+ L G+++HG
Sbjct: 406 VVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHG 465
Query: 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGH 341
F I+K ++ ++ A+IDMY+KCG ++ A +FE S +D ++W+S+++
Sbjct: 466 FIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQSDNPS 524
Query: 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT------T 395
A+ ++ +M G D ++I LSAC N E + I+ + IK + +
Sbjct: 525 AAIDIFRQMGVSGICYDCVSISAALSACA-----NLPSESFGKAIHGFMIKHSLASDVYS 579
Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455
E + ++DM + G L A++ KTM E + W ++++A HG + + +++
Sbjct: 580 E--STLIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVE 636
Query: 456 LEPENPSNYVSLSNLYASSRRWD---AVAELRTMMKDRGLK 493
P L + + D V R+M +D G++
Sbjct: 637 KSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQ 677
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 168/375 (44%), Gaps = 42/375 (11%)
Query: 3 LSSARNTFALVTSRNYTSATVQH----FLQVSATHRSLKLTKQSHSQILSLGHISNPFVS 58
++ + + L S + T+ LQ + L+ KQ H+ ++ + +
Sbjct: 14 IAPYKKSLPLRNSSRFLEETIPRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTD 73
Query: 59 TKLITAYALCGQPTQSQLVFN--SIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116
+++ YA+CG + +F ++ + +NS+I+ +V+N N+AL + M
Sbjct: 74 ERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFG 133
Query: 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176
VSPD T + K +K+ + +G + +A+SL+ Y++ GK
Sbjct: 134 VSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPS 193
Query: 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGD 236
LFD + Q++ WNV ++G Y + G
Sbjct: 194 KLFDRVLQKDCVIWNVMLNG----------------------------------YAKCGA 219
Query: 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296
LD + F M++ D+I PN V+ VL C+S + + G Q+HG + ++ + S+ N
Sbjct: 220 LDSVIKGFSVMRM-DQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKN 278
Query: 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356
+L+ MYSKCG D A ++F S D +TW+ ++SGY G E++ + +M+ G
Sbjct: 279 SLLSMYSKCGRFDDASKLFRMMS-RADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVL 337
Query: 357 PDIITIVGVLSACGR 371
PD IT +L + +
Sbjct: 338 PDAITFSSLLPSVSK 352
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 5/177 (2%)
Query: 18 YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLV 77
Y ++ L A S K H ++ S+ + + LI YA CG + V
Sbjct: 540 YDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNV 599
Query: 78 FNSIQHKDVYLYNSLINGYVKNHGH-NEALELFSNMY-YSNVSPDDFTLATISKLSGEIK 135
F +++ K++ +NS+I NHG ++L LF M S + PD T I +
Sbjct: 600 FKTMKEKNIVSWNSIIAA-CGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVG 658
Query: 136 DLNVGM-LIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP-QRNVGSW 190
D++ G+ ++ G ++ ++ + G+ +E MP + G W
Sbjct: 659 DVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVW 715
>sp|Q9FNN9|PP370_ARATH Putative pentatricopeptide repeat-containing protein At5g08490
OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1
Length = 849
Score = 295 bits (756), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 167/521 (32%), Positives = 294/521 (56%), Gaps = 11/521 (2%)
Query: 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLGHI-SNPFVSTKLITAYALCGQPTQSQLVF 78
S T+ L V A L K+ HS IL ++ + V LI+ YA G + + F
Sbjct: 330 SVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAF 389
Query: 79 NSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138
+ + KD+ +N++++ + + + L L ++ ++ D T+ ++ K ++ +
Sbjct: 390 SLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIG 449
Query: 139 VGMLIHGLSIKIGFVVD---VILANSLMSMYVKCGKFSECLNLFDEMPQR-NVGSWNVRI 194
+HG S+K G + D L N+L+ Y KCG +F + +R + S+N +
Sbjct: 450 KVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLL 509
Query: 195 SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254
SG+ +SG ++ +F +M ++ W+ M+ Y ++ +EA+ +F E+Q + +
Sbjct: 510 SGYVNSGSHD---DAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFREIQARG-MR 565
Query: 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314
PN V+++++LP C+ L L +Q HG+ IR L D+ L L+D+Y+KCGSL A V
Sbjct: 566 PNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSV 624
Query: 315 FEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374
F+ S +D + ++++V+GY +HG+G EA+++Y+ M KPD + I +L+AC +GL
Sbjct: 625 FQ-SDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGL 683
Query: 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434
I +GL+IY+S+ + +KPT E AC VD++ R G+LD A F+ MPVEP+ +IWG L+
Sbjct: 684 IQDGLQIYDSIRTVHGMKPTMEQYACAVDLIARGGRLDDAYSFVTQMPVEPNANIWGTLL 743
Query: 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494
A + ++ L+Q E ++ N+V +SN+YA+ +W+ V ELR +MK + +KK
Sbjct: 744 RACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKK 803
Query: 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535
GCSW+ + G+ + F D +HP SI+++++ L L M+
Sbjct: 804 PAGCSWLEVDGQRNVFVSGDCSHPRRDSIFDLVNALYLQMK 844
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 182/401 (45%), Gaps = 45/401 (11%)
Query: 43 HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH 102
H + LGHI+ VS ++ YA C + Q +F + D ++N ++ G + G
Sbjct: 44 HGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNIVLTGLSVSCG- 102
Query: 103 NEALELFSNMYYSN-VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS 161
E + F M++++ P T A + L + D G +H IK G D ++ N+
Sbjct: 103 RETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNA 162
Query: 162 LMSMYVKCGK-FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220
L+SMY K G F + FD + ++V SWN
Sbjct: 163 LVSMYAKFGFIFPDAYTAFDGIADKDVVSWN----------------------------- 193
Query: 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL---IGLSGGK 277
A+I G+ +N + +A F M LK+ EPN ++ +VLP C+S+ I G+
Sbjct: 194 -----AIIAGFSENNMMADAFRSFCLM-LKEPTEPNYATIANVLPVCASMDKNIACRSGR 247
Query: 278 QIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336
QIH + +++ L V +CN+L+ Y + G ++ A +F +KD ++W+ +++GY
Sbjct: 248 QIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMG-SKDLVSWNVVIAGYAS 306
Query: 337 HGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395
+ + +A L++ +V G PD +TI+ +L C + + G EI++ ++ + T
Sbjct: 307 NCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDT 366
Query: 396 EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSA 436
+ ++ R G A M + S W A++ A
Sbjct: 367 SVGNALISFYARFGDTSAAYWAFSLMSTKDIIS-WNAILDA 406
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/424 (24%), Positives = 202/424 (47%), Gaps = 60/424 (14%)
Query: 2 ILSSARNTFALV----TSRNYTSATVQHFLQVSAT---HRSLKLTKQSHSQILSLGHI-S 53
+++ A +F L+ T NY AT+ + L V A+ + + + +Q HS ++ + +
Sbjct: 204 MMADAFRSFCLMLKEPTEPNY--ATIANVLPVCASMDKNIACRSGRQIHSYVVQRSWLQT 261
Query: 54 NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113
+ FV L++ Y G+ ++ +F + KD+ +N +I GY N +A +LF N+
Sbjct: 262 HVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLV 321
Query: 114 YS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILANSLMSMYVKCGK 171
+ +VSPD T+ +I + ++ DL G IH ++ +++ D + N+L+S Y + G
Sbjct: 322 HKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNALISFYARFGD 381
Query: 172 FSECLNLFDEMPQRNVGSWNVRISGHASS-GDFSLVVRSRRVFDQMKRRNVYAWTAMING 230
S F M +++ SWN + A S F + +
Sbjct: 382 TSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHL------------------ 423
Query: 231 YVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290
L+EA+ L + V+++S+L C ++ G+ K++HG++++ L H
Sbjct: 424 ------LNEAITL------------DSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLH 465
Query: 291 DVS---LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
D L NAL+D Y+KCG+++ A ++F S + ++++S++SGY G +A +L+
Sbjct: 466 DEEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLF 525
Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
+M S D+ T ++ S NE + ++ I ++P T ++++L
Sbjct: 526 TEM----STTDLTTWSLMVRIYAESCCPNEAIGVFRE-IQARGMRPNT---VTIMNLLPV 577
Query: 408 AGQL 411
QL
Sbjct: 578 CAQL 581
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 104/444 (23%), Positives = 190/444 (42%), Gaps = 48/444 (10%)
Query: 40 KQSHSQILSLGHISNPFVSTKLITAYALCGQP-TQSQLVFNSIQHKDVYLYNSLINGYVK 98
K HS I+ G + V L++ YA G + F+ I KDV +N++I G+ +
Sbjct: 142 KSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSE 201
Query: 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV----GMLIHGLSIKIGFV- 153
N+ +A F M P+ T+A + + + D N+ G IH ++ ++
Sbjct: 202 NNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASM-DKNIACRSGRQIHSYVVQRSWLQ 260
Query: 154 VDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213
V + NSL+S Y++ G+ E +LF M +++ S
Sbjct: 261 THVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVS------------------------ 296
Query: 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL 273
W +I GY N + +A LF + K + P+ V+++S+LP C+ L L
Sbjct: 297 ----------WNVVIAGYASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDL 346
Query: 274 SGGKQIHGFAIRKE-LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVS 332
+ GK+IH + +R L D S+ NALI Y++ G A F S KD I+W++I+
Sbjct: 347 ASGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMS-TKDIISWNAILD 405
Query: 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392
+ K + + L + ++ D +TI+ +L C I + E++ + +
Sbjct: 406 AFADSPKQFQFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLH 465
Query: 393 PTTE--ICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAY 450
E + ++D + G ++ A + + + +L+S V NS D A
Sbjct: 466 DEEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYV---NSGSHDDAQ 522
Query: 451 KSLIQLEPENPSNYVSLSNLYASS 474
++ + + + + +YA S
Sbjct: 523 MLFTEMSTTDLTTWSLMVRIYAES 546
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 128/310 (41%), Gaps = 38/310 (12%)
Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
S D + K + DL G +HG K+G + ++ S+++MY KC + +
Sbjct: 15 SGFGTDHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDD 74
Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
C +F +M + WN+ ++G L V R
Sbjct: 75 CQKMFRQMDSLDPVVWNIVLTG--------LSVSCGR----------------------- 103
Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
E + F M D +P+ V+ VLP C L GK +H + I+ L D +
Sbjct: 104 ----ETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLV 159
Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG 354
NAL+ MY+K G + D +KD ++W++I++G+ + +A + M+
Sbjct: 160 GNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEP 219
Query: 355 SKPDIITIVGVLSACG---RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411
++P+ TI VL C ++ G +I++ V+ ++ +C +V R G++
Sbjct: 220 TEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRI 279
Query: 412 DRALDFIKTM 421
+ A M
Sbjct: 280 EEAASLFTRM 289
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 22/220 (10%)
Query: 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV--SLCNALIDMYSKCGSLDCARRVFED 317
+ V+ C+S+ L+ G+ +HG + L H + ++++MY+KC +D +++F
Sbjct: 24 FLDVVKACASVSDLTSGRALHGCVFK--LGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQ 81
Query: 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLIN 376
+ D + W+ +++G + G E + + M KP +T VL C R G
Sbjct: 82 MD-SLDPVVWNIVLTGLSV-SCGRETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSY 139
Query: 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL----DRALDFIKTMPVEPSPSIWGA 432
G +++ +I ++ T + +V M + G + A D I V W A
Sbjct: 140 NGKSMHSYIIKA-GLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVS----WNA 194
Query: 433 LVSASVMHGNSEMQDLAYKS--LIQLEPENPSNYVSLSNL 470
+++ N+ M D A++S L+ EP P NY +++N+
Sbjct: 195 IIAG--FSENNMMAD-AFRSFCLMLKEPTEP-NYATIANV 230
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 295 bits (755), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 169/552 (30%), Positives = 277/552 (50%), Gaps = 38/552 (6%)
Query: 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC---GQPTQSQLVF 78
+ H L + + ++L+ Q H + G ++ + + KLI A+ P +L+
Sbjct: 4 AIHHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLL 63
Query: 79 NSIQHKDVYLYNSLINGYVK-NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDL 137
D +++N+L+ GY + + HN M V PD F+ A + K + L
Sbjct: 64 -CFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSL 122
Query: 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197
G +H ++K G + + +L+ MY CG +FDEM Q N+ +WN I+
Sbjct: 123 RTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITAC 182
Query: 198 ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI---- 253
D V +R +FD+M RN +W M+ GY++ G+L+ A +F EM +D +
Sbjct: 183 FRGND---VAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWST 239
Query: 254 --------------------------EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287
PN+VSL VL CS GK +HGF +
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 299
Query: 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLY 347
+ VS+ NALIDMYS+CG++ AR VFE + ++W+S+++G +HG+G EAV L+
Sbjct: 300 YSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLF 359
Query: 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407
N+M G PD I+ + +L AC +GLI EG + ++ + Y I+P E C+VD+ GR
Sbjct: 360 NEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGR 419
Query: 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467
+G+L +A DFI MP+ P+ +W L+ A HGN E+ + + L +L+P N + V L
Sbjct: 420 SGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLL 479
Query: 468 SNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEML 527
SN YA++ +W VA +R M + +KK+ S + + + F+ +K + +E L
Sbjct: 480 SNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKL 539
Query: 528 DDLILIMRGAAA 539
++IL ++ A
Sbjct: 540 KEIILRLKDEAG 551
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 294 bits (753), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 174/548 (31%), Positives = 284/548 (51%), Gaps = 68/548 (12%)
Query: 26 FLQVSATHRSLKLTKQSHSQILSLGHISNPFV---------------------------- 57
F+Q T +SL KQ H ++ G S+ F+
Sbjct: 50 FIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKN 109
Query: 58 ---STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY 114
S LI Y G ++ VF+ + + + +N++I G ++ + E L LF M+
Sbjct: 110 YMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHG 169
Query: 115 SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174
SPD++TL ++ S ++ +++G IHG +IK G +D+++ +SL MY++ GK
Sbjct: 170 LGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ- 228
Query: 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234
D +V+RS M RN+ AW +I G QN
Sbjct: 229 ---------------------------DGEIVIRS------MPVRNLVAWNTLIMGNAQN 255
Query: 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL 294
G + L L+ M++ PNK++ V+VL +CS L G+QIH AI+ + V++
Sbjct: 256 GCPETVLYLYKMMKISG-CRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAV 314
Query: 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMV-CL 353
++LI MYSKCG L A + F + ++D + WSS++S YG HG+G EA+ L+N M
Sbjct: 315 VSSLISMYSKCGCLGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQT 373
Query: 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413
+ + + + +L AC SGL ++GLE+++ ++ Y KP + CVVD+LGRAG LD+
Sbjct: 374 NMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQ 433
Query: 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473
A I++MP++ IW L+SA +H N+EM +K ++Q++P + + YV L+N++AS
Sbjct: 434 AEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHAS 493
Query: 474 SRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILI 533
++RW V+E+R M+D+ +KK G SW G+ H F + D++ S IY L +L L
Sbjct: 494 AKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLE 553
Query: 534 MRGAAASP 541
M+ P
Sbjct: 554 MKLKGYKP 561
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,396,011
Number of Sequences: 539616
Number of extensions: 7904757
Number of successful extensions: 26485
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 18715
Number of HSP's gapped (non-prelim): 2198
length of query: 547
length of database: 191,569,459
effective HSP length: 123
effective length of query: 424
effective length of database: 125,196,691
effective search space: 53083396984
effective search space used: 53083396984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)