Query 044812
Match_columns 547
No_of_seqs 586 out of 3518
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 07:00:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.2E-80 7E-85 652.3 60.1 537 4-546 138-776 (857)
2 PLN03081 pentatricopeptide (PP 100.0 6.1E-78 1.3E-82 620.3 56.1 520 18-546 85-613 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.6E-68 5.7E-73 561.9 48.3 504 20-544 86-658 (857)
4 PLN03218 maturation of RBCL 1; 100.0 3.1E-66 6.6E-71 535.4 54.9 513 14-545 364-917 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.8E-64 3.9E-69 522.3 50.9 484 4-498 387-917 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-56 2.3E-61 462.7 42.2 464 50-545 82-565 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.3E-30 7.2E-35 278.9 49.8 476 5-491 381-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.6E-30 1.4E-34 276.5 49.2 473 5-491 347-833 (899)
9 PRK11447 cellulose synthase su 99.9 5.9E-23 1.3E-27 222.8 45.3 521 4-542 79-746 (1157)
10 PRK11447 cellulose synthase su 99.9 3.4E-21 7.5E-26 209.1 52.0 490 23-532 31-699 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.1E-22 2.3E-27 188.0 29.0 441 23-479 51-508 (966)
12 PRK09782 bacteriophage N4 rece 99.9 7.4E-20 1.6E-24 190.0 48.4 226 259-491 479-707 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 2.1E-21 4.5E-26 179.5 31.7 448 29-492 24-487 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 3E-19 6.4E-24 182.3 44.2 421 58-490 130-571 (615)
15 PRK11788 tetratricopeptide rep 99.9 2E-20 4.3E-25 181.5 30.2 272 222-498 70-355 (389)
16 PRK09782 bacteriophage N4 rece 99.9 1.3E-18 2.8E-23 180.8 45.0 483 27-532 51-705 (987)
17 PRK10049 pgaA outer membrane p 99.9 2.9E-18 6.2E-23 178.2 41.6 420 9-462 4-462 (765)
18 PRK15174 Vi polysaccharide exp 99.9 4.9E-18 1.1E-22 172.7 40.5 355 66-460 16-385 (656)
19 PRK11788 tetratricopeptide rep 99.9 1.9E-19 4.1E-24 174.7 28.6 301 64-396 44-354 (389)
20 PRK10049 pgaA outer membrane p 99.9 9.7E-18 2.1E-22 174.3 40.5 402 52-491 12-457 (765)
21 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-16 2.7E-21 163.1 43.0 419 23-461 130-576 (615)
22 PRK14574 hmsH outer membrane p 99.8 4.7E-16 1E-20 158.6 45.2 430 23-463 37-520 (822)
23 PRK15174 Vi polysaccharide exp 99.8 9.9E-17 2.1E-21 163.3 38.7 356 96-491 15-382 (656)
24 KOG2002 TPR-containing nuclear 99.8 2.9E-16 6.3E-21 153.4 34.4 482 3-492 215-747 (1018)
25 PRK14574 hmsH outer membrane p 99.8 7.7E-15 1.7E-19 149.8 46.3 422 62-491 41-514 (822)
26 KOG2002 TPR-containing nuclear 99.8 3.1E-15 6.7E-20 146.4 32.7 482 4-492 147-711 (1018)
27 KOG4422 Uncharacterized conser 99.8 4.1E-14 8.9E-19 126.1 35.3 411 23-457 119-591 (625)
28 KOG2003 TPR repeat-containing 99.7 5.3E-15 1.1E-19 132.7 25.1 446 23-476 204-709 (840)
29 KOG4422 Uncharacterized conser 99.7 1.9E-13 4.2E-18 121.9 30.2 351 51-421 203-587 (625)
30 KOG2003 TPR repeat-containing 99.7 5.8E-13 1.2E-17 119.8 30.8 434 55-498 201-696 (840)
31 PF13429 TPR_15: Tetratricopep 99.7 4.4E-16 9.6E-21 143.0 11.0 257 226-488 13-275 (280)
32 KOG0495 HAT repeat protein [RN 99.7 8.7E-11 1.9E-15 110.8 44.6 451 34-503 390-891 (913)
33 KOG2076 RNA polymerase III tra 99.6 1.3E-12 2.8E-17 127.5 32.0 319 166-488 149-510 (895)
34 KOG0547 Translocase of outer m 99.6 1E-12 2.2E-17 119.4 26.1 381 90-488 119-564 (606)
35 KOG1155 Anaphase-promoting com 99.6 3.8E-12 8.3E-17 115.0 29.5 329 151-489 159-494 (559)
36 KOG2076 RNA polymerase III tra 99.6 1.9E-10 4.2E-15 112.7 41.4 178 27-206 146-335 (895)
37 KOG1915 Cell cycle control pro 99.6 2.1E-10 4.5E-15 104.3 37.7 476 5-487 91-622 (677)
38 KOG1173 Anaphase-promoting com 99.6 2.2E-10 4.9E-15 106.5 38.7 442 34-488 30-516 (611)
39 KOG0495 HAT repeat protein [RN 99.6 1.2E-09 2.5E-14 103.4 42.1 436 40-492 366-848 (913)
40 PRK10747 putative protoheme IX 99.6 5.5E-12 1.2E-16 121.3 28.0 288 99-456 97-390 (398)
41 PRK10747 putative protoheme IX 99.5 1.4E-11 3.1E-16 118.4 30.1 255 224-489 121-389 (398)
42 KOG1126 DNA-binding cell divis 99.5 1.8E-12 3.9E-17 122.6 23.1 275 208-491 337-621 (638)
43 KOG4318 Bicoid mRNA stability 99.5 3.1E-11 6.8E-16 117.5 31.1 430 41-494 11-598 (1088)
44 KOG1155 Anaphase-promoting com 99.5 7.6E-11 1.7E-15 106.8 31.5 378 52-457 161-554 (559)
45 KOG1126 DNA-binding cell divis 99.5 1.1E-12 2.4E-17 124.0 20.3 280 136-461 334-625 (638)
46 PF13429 TPR_15: Tetratricopep 99.5 7E-14 1.5E-18 128.4 12.1 258 93-386 15-275 (280)
47 KOG1915 Cell cycle control pro 99.5 9.3E-10 2E-14 100.1 37.4 428 52-492 70-538 (677)
48 TIGR00540 hemY_coli hemY prote 99.5 7.4E-11 1.6E-15 114.1 31.5 132 322-455 261-398 (409)
49 TIGR00540 hemY_coli hemY prote 99.5 6.1E-11 1.3E-15 114.7 30.6 259 222-488 119-397 (409)
50 KOG0547 Translocase of outer m 99.5 8.5E-10 1.8E-14 100.8 32.0 221 229-457 334-567 (606)
51 COG3071 HemY Uncharacterized e 99.5 5.7E-10 1.2E-14 99.7 30.1 287 134-456 97-390 (400)
52 TIGR02521 type_IV_pilW type IV 99.4 1.5E-10 3.3E-15 103.6 24.0 199 291-490 30-232 (234)
53 COG3071 HemY Uncharacterized e 99.4 9.8E-10 2.1E-14 98.2 28.0 261 219-490 116-390 (400)
54 COG2956 Predicted N-acetylgluc 99.4 8E-10 1.7E-14 95.8 25.6 265 99-369 48-325 (389)
55 COG2956 Predicted N-acetylgluc 99.4 9.1E-10 2E-14 95.4 25.6 295 169-498 48-355 (389)
56 KOG1156 N-terminal acetyltrans 99.4 2.2E-08 4.8E-13 95.0 36.5 433 33-503 20-486 (700)
57 KOG4318 Bicoid mRNA stability 99.4 2.1E-10 4.5E-15 112.0 23.5 251 107-374 11-286 (1088)
58 KOG4162 Predicted calmodulin-b 99.3 1.2E-08 2.6E-13 98.7 31.8 430 43-491 311-784 (799)
59 PF13041 PPR_2: PPR repeat fam 99.3 6.7E-12 1.5E-16 80.6 6.8 50 322-371 1-50 (50)
60 PF13041 PPR_2: PPR repeat fam 99.3 4.2E-12 9.1E-17 81.5 5.6 50 84-133 1-50 (50)
61 KOG1840 Kinesin light chain [C 99.3 4E-09 8.6E-14 101.2 28.2 99 122-247 200-309 (508)
62 KOG1840 Kinesin light chain [C 99.3 1.6E-09 3.5E-14 103.9 25.1 229 260-488 202-477 (508)
63 KOG3785 Uncharacterized conser 99.3 4.6E-08 1E-12 86.0 30.5 442 30-492 32-492 (557)
64 KOG1174 Anaphase-promoting com 99.3 2.5E-07 5.5E-12 83.2 35.6 262 219-489 230-499 (564)
65 KOG1129 TPR repeat-containing 99.2 9.9E-10 2.2E-14 95.2 18.3 228 259-491 225-459 (478)
66 TIGR02521 type_IV_pilW type IV 99.2 5.1E-09 1.1E-13 93.7 24.4 197 221-456 31-232 (234)
67 PRK12370 invasion protein regu 99.2 4.7E-09 1E-13 105.7 25.9 261 220-491 255-536 (553)
68 KOG1173 Anaphase-promoting com 99.2 1.5E-08 3.3E-13 94.6 26.5 282 155-472 243-534 (611)
69 KOG2376 Signal recognition par 99.2 1E-06 2.2E-11 83.2 37.7 437 29-486 21-516 (652)
70 COG3063 PilF Tfp pilus assembl 99.2 2.1E-09 4.6E-14 88.9 17.5 169 327-501 38-212 (250)
71 KOG2047 mRNA splicing factor [ 99.2 1E-06 2.3E-11 83.8 37.1 452 29-488 111-685 (835)
72 PF12569 NARP1: NMDA receptor- 99.2 2.1E-07 4.6E-12 90.7 33.8 429 26-486 10-516 (517)
73 KOG1129 TPR repeat-containing 99.2 3.2E-09 6.9E-14 92.1 18.1 231 224-460 226-462 (478)
74 PRK12370 invasion protein regu 99.2 7.1E-09 1.5E-13 104.4 23.8 212 271-490 275-502 (553)
75 PRK11189 lipoprotein NlpI; Pro 99.1 9.8E-09 2.1E-13 94.5 21.1 190 293-491 65-266 (296)
76 KOG2047 mRNA splicing factor [ 99.1 9.4E-06 2E-10 77.6 39.7 408 72-496 92-584 (835)
77 PF12569 NARP1: NMDA receptor- 99.1 5.6E-08 1.2E-12 94.6 25.6 270 228-503 11-309 (517)
78 KOG4162 Predicted calmodulin-b 99.1 5.8E-07 1.3E-11 87.4 31.8 425 18-462 321-789 (799)
79 PRK11189 lipoprotein NlpI; Pro 99.1 9.1E-08 2E-12 88.1 25.8 230 234-471 39-281 (296)
80 KOG1174 Anaphase-promoting com 99.1 8.8E-07 1.9E-11 79.9 30.0 228 230-464 275-508 (564)
81 KOG4340 Uncharacterized conser 99.1 9.2E-07 2E-11 76.3 28.6 386 89-489 13-442 (459)
82 KOG1156 N-terminal acetyltrans 99.1 9.3E-07 2E-11 84.3 31.1 386 98-492 19-436 (700)
83 KOG0985 Vesicle coat protein c 99.1 1.4E-06 3.1E-11 87.0 33.2 142 324-486 1104-1245(1666)
84 KOG3785 Uncharacterized conser 99.1 1.7E-06 3.8E-11 76.4 29.4 52 31-83 68-119 (557)
85 KOG3616 Selective LIM binding 99.0 8.1E-07 1.8E-11 85.7 28.1 219 229-485 714-932 (1636)
86 COG3063 PilF Tfp pilus assembl 99.0 4.2E-07 9.2E-12 75.6 22.1 168 291-461 68-241 (250)
87 KOG0624 dsRNA-activated protei 99.0 1.6E-06 3.4E-11 76.4 26.5 295 157-462 39-376 (504)
88 PF04733 Coatomer_E: Coatomer 99.0 2.6E-08 5.6E-13 90.3 16.2 227 222-461 36-270 (290)
89 KOG1125 TPR repeat-containing 99.0 2.3E-08 5.1E-13 93.8 16.1 216 267-488 295-525 (579)
90 PF04733 Coatomer_E: Coatomer 98.9 1.9E-08 4.2E-13 91.1 13.5 247 228-490 8-265 (290)
91 KOG3617 WD40 and TPR repeat-co 98.9 4.7E-06 1E-10 81.7 30.1 375 54-486 725-1170(1416)
92 PRK04841 transcriptional regul 98.9 1.6E-05 3.5E-10 86.4 38.0 325 166-491 384-761 (903)
93 cd05804 StaR_like StaR_like; a 98.9 8.5E-06 1.8E-10 78.1 31.8 260 228-491 50-337 (355)
94 KOG0985 Vesicle coat protein c 98.9 1.4E-05 3E-10 80.2 32.7 358 84-488 982-1368(1666)
95 KOG3616 Selective LIM binding 98.9 1.5E-05 3.3E-10 77.3 31.5 342 96-486 742-1130(1636)
96 KOG2376 Signal recognition par 98.9 9.7E-06 2.1E-10 76.8 29.5 410 62-490 19-487 (652)
97 KOG4340 Uncharacterized conser 98.9 8.9E-07 1.9E-11 76.3 20.5 304 159-486 13-335 (459)
98 KOG3617 WD40 and TPR repeat-co 98.8 9.3E-06 2E-10 79.7 28.4 240 32-317 740-992 (1416)
99 KOG1127 TPR repeat-containing 98.8 6E-06 1.3E-10 82.8 27.3 220 267-489 860-1103(1238)
100 PRK04841 transcriptional regul 98.8 3.7E-05 8.1E-10 83.6 34.8 235 223-458 493-762 (903)
101 KOG0548 Molecular co-chaperone 98.8 2E-05 4.3E-10 74.0 27.3 426 29-485 11-484 (539)
102 KOG0548 Molecular co-chaperone 98.8 2E-05 4.3E-10 74.0 27.1 380 94-491 10-456 (539)
103 TIGR03302 OM_YfiO outer membra 98.8 1.1E-06 2.3E-11 78.7 18.7 184 290-491 31-233 (235)
104 PRK10370 formate-dependent nit 98.7 1.7E-06 3.7E-11 74.1 18.3 147 332-492 24-175 (198)
105 KOG1127 TPR repeat-containing 98.7 4.3E-05 9.4E-10 76.9 28.8 437 40-487 476-993 (1238)
106 KOG1128 Uncharacterized conser 98.7 1E-06 2.2E-11 85.2 16.9 190 288-493 394-585 (777)
107 KOG1070 rRNA processing protei 98.7 4.4E-06 9.5E-11 86.6 22.0 204 289-496 1455-1669(1710)
108 cd05804 StaR_like StaR_like; a 98.7 8.3E-05 1.8E-09 71.2 30.4 315 220-538 5-341 (355)
109 PF12854 PPR_1: PPR repeat 98.7 2.9E-08 6.2E-13 57.0 3.5 34 49-82 1-34 (34)
110 PRK15359 type III secretion sy 98.6 1.3E-06 2.7E-11 70.7 14.1 108 362-471 27-136 (144)
111 PF12854 PPR_1: PPR repeat 98.6 4.3E-08 9.4E-13 56.2 3.9 33 151-183 2-34 (34)
112 KOG0624 dsRNA-activated protei 98.6 0.00012 2.6E-09 64.9 26.4 305 58-421 41-367 (504)
113 KOG1128 Uncharacterized conser 98.6 3.5E-06 7.6E-11 81.7 18.3 239 152-406 394-634 (777)
114 PRK15359 type III secretion sy 98.6 9.7E-07 2.1E-11 71.4 12.6 108 379-491 13-122 (144)
115 KOG1125 TPR repeat-containing 98.6 5.4E-06 1.2E-10 78.3 18.2 249 228-484 292-565 (579)
116 COG5010 TadD Flp pilus assembl 98.5 1.7E-05 3.8E-10 67.7 18.4 156 328-486 70-227 (257)
117 KOG3081 Vesicle coat complex C 98.5 0.00014 3E-09 62.3 22.7 153 299-459 115-274 (299)
118 PLN02789 farnesyltranstransfer 98.5 5.9E-05 1.3E-09 69.5 22.6 214 271-488 51-300 (320)
119 PRK15179 Vi polysaccharide bio 98.5 1.6E-05 3.5E-10 80.8 20.1 159 322-491 84-246 (694)
120 TIGR03302 OM_YfiO outer membra 98.5 2E-05 4.4E-10 70.4 18.8 183 255-458 31-234 (235)
121 COG5010 TadD Flp pilus assembl 98.4 3E-05 6.5E-10 66.3 16.9 135 356-492 63-199 (257)
122 KOG2053 Mitochondrial inherita 98.4 0.003 6.4E-08 63.6 35.2 415 67-496 21-508 (932)
123 KOG3081 Vesicle coat complex C 98.4 0.00017 3.8E-09 61.7 20.7 245 228-489 15-270 (299)
124 PRK10370 formate-dependent nit 98.4 6E-05 1.3E-09 64.6 18.6 155 299-465 23-182 (198)
125 TIGR02552 LcrH_SycD type III s 98.4 6E-06 1.3E-10 66.5 12.0 98 394-491 16-115 (135)
126 PRK15363 pathogenicity island 98.4 1.5E-05 3.2E-10 63.4 13.5 96 394-489 34-131 (157)
127 KOG1070 rRNA processing protei 98.3 0.00012 2.5E-09 76.5 21.6 227 256-483 1457-1693(1710)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.6E-05 3.5E-10 74.7 14.5 122 362-488 172-295 (395)
129 PRK14720 transcript cleavage f 98.3 0.00033 7.2E-09 72.4 24.6 149 294-472 118-268 (906)
130 PRK14720 transcript cleavage f 98.3 3.5E-05 7.6E-10 79.3 17.6 249 219-525 29-282 (906)
131 COG4783 Putative Zn-dependent 98.3 6.8E-05 1.5E-09 69.9 17.7 117 369-487 316-434 (484)
132 KOG3060 Uncharacterized conser 98.3 0.00021 4.5E-09 60.8 18.6 161 327-491 55-221 (289)
133 PRK15179 Vi polysaccharide bio 98.3 0.00028 6E-09 72.1 23.0 157 288-454 82-243 (694)
134 COG4783 Putative Zn-dependent 98.2 0.00057 1.2E-08 63.9 22.0 143 327-491 309-455 (484)
135 PLN02789 farnesyltranstransfer 98.2 0.00042 9E-09 64.0 21.3 191 298-491 43-251 (320)
136 TIGR00756 PPR pentatricopeptid 98.2 2.5E-06 5.5E-11 49.8 4.4 35 87-121 1-35 (35)
137 TIGR02552 LcrH_SycD type III s 98.2 7.3E-05 1.6E-09 60.1 13.9 115 346-464 5-122 (135)
138 KOG1914 mRNA cleavage and poly 98.2 0.0073 1.6E-07 57.4 28.9 204 237-444 309-527 (656)
139 PF13812 PPR_3: Pentatricopept 98.2 3.4E-06 7.4E-11 48.8 4.2 33 87-119 2-34 (34)
140 PF09976 TPR_21: Tetratricopep 98.2 9.6E-05 2.1E-09 60.1 14.2 114 372-486 24-143 (145)
141 TIGR00756 PPR pentatricopeptid 98.1 5.4E-06 1.2E-10 48.4 4.3 33 326-358 2-34 (35)
142 PF12895 Apc3: Anaphase-promot 98.1 4.2E-06 9.1E-11 60.7 4.5 78 408-486 2-83 (84)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.2E-05 1.6E-09 70.4 13.5 125 57-183 171-295 (395)
144 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00011 2.3E-09 57.6 12.2 102 362-463 5-112 (119)
145 cd00189 TPR Tetratricopeptide 98.0 6E-05 1.3E-09 56.1 10.1 93 398-490 3-97 (100)
146 TIGR02795 tol_pal_ybgF tol-pal 98.0 8.3E-05 1.8E-09 58.2 11.2 96 396-491 3-106 (119)
147 PF13812 PPR_3: Pentatricopept 98.0 9.6E-06 2.1E-10 46.9 4.3 33 325-357 2-34 (34)
148 PF09976 TPR_21: Tetratricopep 98.0 0.00051 1.1E-08 55.8 15.9 126 326-453 14-144 (145)
149 KOG1914 mRNA cleavage and poly 98.0 0.015 3.2E-07 55.4 33.4 148 340-490 347-501 (656)
150 PF13414 TPR_11: TPR repeat; P 98.0 2.2E-05 4.7E-10 54.4 6.4 64 426-489 2-66 (69)
151 KOG3060 Uncharacterized conser 98.0 0.00067 1.5E-08 57.8 16.0 152 337-490 25-183 (289)
152 KOG0553 TPR repeat-containing 97.9 7.7E-05 1.7E-09 65.2 9.7 108 368-478 90-200 (304)
153 PF13432 TPR_16: Tetratricopep 97.9 3E-05 6.4E-10 53.0 5.7 58 433-490 3-60 (65)
154 PLN03088 SGT1, suppressor of 97.9 0.00029 6.3E-09 66.7 13.6 101 367-469 10-112 (356)
155 PF07079 DUF1347: Protein of u 97.8 0.027 5.8E-07 52.6 33.8 441 29-488 15-522 (549)
156 PRK02603 photosystem I assembl 97.8 0.00031 6.6E-09 59.1 11.4 94 396-489 36-148 (172)
157 PRK10153 DNA-binding transcrip 97.8 0.0011 2.5E-08 65.5 16.4 140 321-462 334-488 (517)
158 PF14938 SNAP: Soluble NSF att 97.8 0.0055 1.2E-07 56.2 19.9 129 298-428 120-269 (282)
159 PF01535 PPR: PPR repeat; Int 97.8 3.4E-05 7.3E-10 43.4 3.4 31 87-117 1-31 (31)
160 CHL00033 ycf3 photosystem I as 97.8 0.00036 7.9E-09 58.4 11.0 94 394-487 34-139 (168)
161 PF04840 Vps16_C: Vps16, C-ter 97.7 0.036 7.9E-07 51.2 27.5 110 294-421 179-288 (319)
162 PF14938 SNAP: Soluble NSF att 97.7 0.0028 6E-08 58.1 17.2 135 161-324 119-268 (282)
163 PF12895 Apc3: Anaphase-promot 97.7 0.00012 2.7E-09 52.9 6.8 80 373-452 3-83 (84)
164 PRK02603 photosystem I assembl 97.7 0.0018 3.9E-08 54.4 14.5 127 325-475 36-165 (172)
165 COG4700 Uncharacterized protei 97.7 0.004 8.7E-08 50.5 15.2 134 355-490 85-222 (251)
166 PLN03088 SGT1, suppressor of 97.7 0.00078 1.7E-08 63.8 13.6 101 330-434 8-110 (356)
167 PF01535 PPR: PPR repeat; Int 97.7 4.9E-05 1.1E-09 42.7 3.4 30 326-355 2-31 (31)
168 COG4235 Cytochrome c biogenesi 97.7 0.0013 2.8E-08 58.1 13.6 105 392-496 153-262 (287)
169 PF08579 RPM2: Mitochondrial r 97.7 0.00042 9.1E-09 51.1 8.9 80 89-168 28-116 (120)
170 PF14559 TPR_19: Tetratricopep 97.7 5.6E-05 1.2E-09 52.2 4.2 54 438-491 2-55 (68)
171 PF13432 TPR_16: Tetratricopep 97.7 0.0002 4.4E-09 48.8 6.9 61 401-461 3-65 (65)
172 KOG2280 Vacuolar assembly/sort 97.7 0.074 1.6E-06 53.0 27.3 321 149-486 425-795 (829)
173 PF13371 TPR_9: Tetratricopept 97.7 0.00019 4.1E-09 50.3 6.8 58 434-491 2-59 (73)
174 PF10037 MRP-S27: Mitochondria 97.6 0.00078 1.7E-08 63.9 12.2 120 253-372 62-186 (429)
175 cd00189 TPR Tetratricopeptide 97.6 0.00078 1.7E-08 49.8 10.1 92 365-458 6-99 (100)
176 PF10037 MRP-S27: Mitochondria 97.6 0.00061 1.3E-08 64.6 11.1 121 49-169 60-186 (429)
177 KOG2053 Mitochondrial inherita 97.6 0.11 2.4E-06 52.9 38.1 119 362-483 439-563 (932)
178 KOG0553 TPR repeat-containing 97.6 0.00025 5.4E-09 62.1 7.4 87 403-489 89-177 (304)
179 PRK10866 outer membrane biogen 97.6 0.036 7.9E-07 49.2 21.1 65 220-287 31-99 (243)
180 PF05843 Suf: Suppressor of fo 97.5 0.0055 1.2E-07 55.9 16.0 133 325-460 2-140 (280)
181 PF08579 RPM2: Mitochondrial r 97.5 0.0017 3.7E-08 48.0 9.7 78 329-407 30-116 (120)
182 PF05843 Suf: Suppressor of fo 97.5 0.001 2.2E-08 60.6 10.5 129 360-490 2-136 (280)
183 KOG0550 Molecular chaperone (D 97.5 0.004 8.7E-08 57.1 13.8 164 322-491 166-351 (486)
184 PRK15331 chaperone protein Sic 97.4 0.0022 4.7E-08 51.5 10.4 89 401-489 43-133 (165)
185 PF03704 BTAD: Bacterial trans 97.4 0.0025 5.3E-08 51.9 11.1 70 428-497 63-137 (146)
186 PRK10866 outer membrane biogen 97.4 0.032 7E-07 49.6 18.8 176 297-489 37-240 (243)
187 CHL00033 ycf3 photosystem I as 97.4 0.0033 7.2E-08 52.6 12.1 95 86-181 35-138 (168)
188 KOG2041 WD40 repeat protein [G 97.4 0.17 3.7E-06 50.1 24.8 178 52-247 689-878 (1189)
189 PRK10153 DNA-binding transcrip 97.4 0.01 2.3E-07 58.9 16.6 135 354-492 332-484 (517)
190 PRK10803 tol-pal system protei 97.4 0.0021 4.7E-08 57.4 10.8 84 406-489 154-245 (263)
191 PF12688 TPR_5: Tetratrico pep 97.4 0.0043 9.3E-08 47.8 10.9 57 429-485 40-99 (120)
192 PF13414 TPR_11: TPR repeat; P 97.3 0.00066 1.4E-08 46.9 5.9 65 394-458 2-69 (69)
193 PF14559 TPR_19: Tetratricopep 97.3 0.00029 6.2E-09 48.5 4.1 56 371-428 3-59 (68)
194 KOG1130 Predicted G-alpha GTPa 97.3 0.0081 1.8E-07 55.1 13.8 48 131-179 27-78 (639)
195 PF13431 TPR_17: Tetratricopep 97.3 0.00019 4.2E-09 41.0 2.2 34 449-482 1-34 (34)
196 PRK15363 pathogenicity island 97.3 0.011 2.5E-07 47.3 12.8 106 209-352 22-131 (157)
197 PF06239 ECSIT: Evolutionarily 97.2 0.0021 4.6E-08 53.9 8.5 89 83-171 44-153 (228)
198 PF13428 TPR_14: Tetratricopep 97.2 0.00071 1.5E-08 41.6 4.2 42 428-469 2-43 (44)
199 PF07079 DUF1347: Protein of u 97.2 0.2 4.4E-06 47.1 27.9 382 34-432 59-530 (549)
200 COG4700 Uncharacterized protei 97.1 0.092 2E-06 43.0 16.3 136 318-453 83-219 (251)
201 KOG1130 Predicted G-alpha GTPa 97.1 0.0078 1.7E-07 55.2 11.5 277 94-386 25-342 (639)
202 COG3898 Uncharacterized membra 97.1 0.23 5E-06 45.7 26.9 247 229-490 128-392 (531)
203 PF06239 ECSIT: Evolutionarily 97.1 0.007 1.5E-07 50.9 10.2 89 321-410 44-153 (228)
204 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0033 7.1E-08 59.3 9.0 65 426-490 74-141 (453)
205 PRK10803 tol-pal system protei 97.1 0.012 2.7E-07 52.6 12.4 102 361-462 145-252 (263)
206 PF13281 DUF4071: Domain of un 97.1 0.076 1.7E-06 49.6 17.7 163 294-459 143-337 (374)
207 KOG2041 WD40 repeat protein [G 97.0 0.23 5.1E-06 49.2 21.1 131 4-145 680-820 (1189)
208 PF12688 TPR_5: Tetratrico pep 97.0 0.03 6.4E-07 43.2 12.5 91 330-420 7-100 (120)
209 PF13371 TPR_9: Tetratricopept 97.0 0.0029 6.3E-08 44.2 6.3 63 403-465 3-67 (73)
210 KOG0550 Molecular chaperone (D 96.9 0.33 7.3E-06 45.1 20.7 268 94-388 57-350 (486)
211 KOG1538 Uncharacterized conser 96.9 0.058 1.3E-06 52.7 16.0 221 53-319 554-800 (1081)
212 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.37 8E-06 45.3 28.6 91 39-133 28-121 (660)
213 PF09205 DUF1955: Domain of un 96.9 0.082 1.8E-06 40.5 13.4 141 334-493 12-152 (161)
214 PF13424 TPR_12: Tetratricopep 96.9 0.0019 4.1E-08 45.9 4.8 61 428-488 6-73 (78)
215 KOG1538 Uncharacterized conser 96.9 0.15 3.1E-06 50.1 18.0 93 87-184 557-660 (1081)
216 PF04840 Vps16_C: Vps16, C-ter 96.8 0.41 8.8E-06 44.4 25.3 111 361-488 179-289 (319)
217 PF13525 YfiO: Outer membrane 96.8 0.081 1.7E-06 45.7 15.2 142 329-490 10-170 (203)
218 PF13281 DUF4071: Domain of un 96.8 0.13 2.8E-06 48.2 17.0 169 60-250 146-333 (374)
219 KOG2796 Uncharacterized conser 96.8 0.085 1.8E-06 45.7 14.4 59 328-386 181-239 (366)
220 PF13525 YfiO: Outer membrane 96.8 0.29 6.3E-06 42.3 19.4 66 222-287 6-72 (203)
221 KOG2796 Uncharacterized conser 96.7 0.21 4.5E-06 43.4 16.2 137 361-500 179-323 (366)
222 KOG0543 FKBP-type peptidyl-pro 96.6 0.02 4.4E-07 52.8 10.3 61 429-489 259-319 (397)
223 PF13424 TPR_12: Tetratricopep 96.6 0.0041 8.8E-08 44.1 4.8 61 396-456 6-75 (78)
224 PF12921 ATP13: Mitochondrial 96.6 0.035 7.6E-07 43.2 10.1 96 292-405 2-98 (126)
225 KOG0543 FKBP-type peptidyl-pro 96.6 0.043 9.4E-07 50.7 12.1 96 395-490 257-355 (397)
226 KOG2280 Vacuolar assembly/sort 96.5 1.1 2.3E-05 45.2 25.1 97 49-146 426-532 (829)
227 COG4235 Cytochrome c biogenesi 96.3 0.18 4E-06 44.9 14.1 105 356-462 153-262 (287)
228 PF13512 TPR_18: Tetratricopep 96.3 0.16 3.4E-06 40.1 12.1 19 443-461 115-133 (142)
229 COG3898 Uncharacterized membra 96.3 0.97 2.1E-05 41.9 26.3 132 319-456 257-392 (531)
230 COG1729 Uncharacterized protei 96.1 0.058 1.2E-06 47.4 9.7 56 433-488 184-242 (262)
231 COG1729 Uncharacterized protei 96.1 0.068 1.5E-06 46.9 10.0 102 361-463 144-251 (262)
232 PF13512 TPR_18: Tetratricopep 96.0 0.2 4.4E-06 39.5 11.4 60 403-462 18-82 (142)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.048 1E-06 51.7 9.1 63 394-456 74-141 (453)
234 PF12921 ATP13: Mitochondrial 95.9 0.092 2E-06 40.9 9.0 93 359-469 2-96 (126)
235 KOG2610 Uncharacterized conser 95.7 0.27 5.9E-06 44.3 12.2 112 338-452 117-234 (491)
236 PRK15331 chaperone protein Sic 95.7 0.23 5E-06 40.2 10.7 88 366-455 44-133 (165)
237 COG4105 ComL DNA uptake lipopr 95.7 1.3 2.9E-05 38.8 18.5 163 325-489 36-232 (254)
238 PF04053 Coatomer_WDAD: Coatom 95.6 0.26 5.7E-06 47.9 12.8 133 22-183 297-429 (443)
239 PF10300 DUF3808: Protein of u 95.6 0.93 2E-05 44.9 16.8 157 330-489 194-375 (468)
240 PF04053 Coatomer_WDAD: Coatom 95.5 0.94 2E-05 44.2 16.3 84 220-319 346-429 (443)
241 PF07719 TPR_2: Tetratricopept 95.5 0.054 1.2E-06 30.7 5.0 33 428-460 2-34 (34)
242 PF00515 TPR_1: Tetratricopept 95.5 0.04 8.7E-07 31.3 4.4 32 428-459 2-33 (34)
243 KOG1585 Protein required for f 95.4 1.6 3.5E-05 37.8 15.0 162 307-485 73-251 (308)
244 KOG3941 Intermediate in Toll s 95.4 0.12 2.5E-06 45.3 8.5 110 74-183 53-186 (406)
245 PRK11906 transcriptional regul 95.4 0.44 9.6E-06 45.5 13.0 144 339-485 273-431 (458)
246 smart00299 CLH Clathrin heavy 95.3 1.2 2.6E-05 35.7 14.8 126 327-472 10-136 (140)
247 smart00299 CLH Clathrin heavy 95.2 1.3 2.7E-05 35.6 14.7 127 22-167 9-136 (140)
248 PF04184 ST7: ST7 protein; In 95.2 1.9 4E-05 41.7 16.5 99 363-461 263-380 (539)
249 COG3118 Thioredoxin domain-con 95.2 2.2 4.8E-05 38.2 16.1 140 335-476 145-287 (304)
250 COG0457 NrfG FOG: TPR repeat [ 95.2 2 4.4E-05 37.6 26.1 196 293-490 60-265 (291)
251 COG3118 Thioredoxin domain-con 95.1 1.4 3E-05 39.4 14.5 122 367-491 142-266 (304)
252 PF03704 BTAD: Bacterial trans 95.1 0.27 5.8E-06 39.9 9.8 52 332-384 70-121 (146)
253 PRK11906 transcriptional regul 95.1 1.6 3.4E-05 42.0 15.7 80 342-425 322-403 (458)
254 KOG3941 Intermediate in Toll s 95.1 0.22 4.9E-06 43.7 9.3 90 321-411 64-174 (406)
255 KOG4555 TPR repeat-containing 95.0 0.36 7.8E-06 37.0 9.0 88 404-491 52-145 (175)
256 COG3629 DnrI DNA-binding trans 95.0 0.14 3.1E-06 45.7 8.2 69 428-496 154-227 (280)
257 KOG4234 TPR repeat-containing 94.9 0.2 4.4E-06 41.5 8.1 87 405-491 105-198 (271)
258 KOG2610 Uncharacterized conser 94.9 0.32 6.9E-06 43.9 9.9 115 370-486 114-234 (491)
259 KOG1258 mRNA processing protei 94.7 4.8 0.0001 39.8 28.5 180 291-475 296-489 (577)
260 COG4785 NlpI Lipoprotein NlpI, 94.7 2.3 5E-05 36.1 14.9 168 318-492 92-268 (297)
261 KOG2114 Vacuolar assembly/sort 94.6 6.3 0.00014 40.7 26.2 178 55-247 334-516 (933)
262 KOG2114 Vacuolar assembly/sort 94.6 2.5 5.5E-05 43.3 16.3 176 260-453 337-516 (933)
263 PRK11619 lytic murein transgly 94.5 6.8 0.00015 40.6 33.4 77 411-487 295-372 (644)
264 PF10300 DUF3808: Protein of u 94.5 1.8 3.9E-05 42.9 15.5 158 225-385 192-373 (468)
265 PF04184 ST7: ST7 protein; In 94.4 1.5 3.1E-05 42.3 13.5 65 431-495 263-329 (539)
266 KOG1941 Acetylcholine receptor 94.3 0.86 1.9E-05 41.7 11.3 48 231-278 16-64 (518)
267 PF09205 DUF1955: Domain of un 94.2 2 4.4E-05 33.2 11.8 64 223-288 88-151 (161)
268 PF08631 SPO22: Meiosis protei 94.1 4.5 9.8E-05 37.0 23.5 63 222-286 85-150 (278)
269 PF13170 DUF4003: Protein of u 94.1 1.5 3.3E-05 40.2 13.0 145 20-166 57-227 (297)
270 PF07035 Mic1: Colon cancer-as 93.9 3.1 6.6E-05 34.2 13.8 100 143-247 16-115 (167)
271 KOG1941 Acetylcholine receptor 93.9 5.2 0.00011 36.9 19.1 93 222-314 84-184 (518)
272 PF13181 TPR_8: Tetratricopept 93.6 0.17 3.6E-06 28.6 4.0 31 429-459 3-33 (34)
273 KOG4555 TPR repeat-containing 93.6 0.27 5.8E-06 37.7 5.9 58 434-491 50-107 (175)
274 PF02259 FAT: FAT domain; Int 93.6 6.9 0.00015 37.2 20.0 150 323-474 145-305 (352)
275 PF13176 TPR_7: Tetratricopept 93.5 0.16 3.5E-06 29.3 3.8 26 463-488 1-26 (36)
276 PF13176 TPR_7: Tetratricopept 93.4 0.19 4.2E-06 29.0 4.0 28 429-456 1-28 (36)
277 COG0457 NrfG FOG: TPR repeat [ 93.1 5.6 0.00012 34.7 26.0 222 235-459 37-268 (291)
278 KOG2066 Vacuolar assembly/sort 93.0 12 0.00027 38.4 25.1 163 62-247 363-531 (846)
279 PF14853 Fis1_TPR_C: Fis1 C-te 92.9 0.93 2E-05 28.9 6.8 51 463-539 3-53 (53)
280 COG4105 ComL DNA uptake lipopr 92.7 6.7 0.00015 34.5 20.2 65 223-287 36-101 (254)
281 KOG0890 Protein kinase of the 92.5 27 0.00058 41.1 24.2 63 395-457 1670-1732(2382)
282 PF10602 RPN7: 26S proteasome 92.3 3.9 8.5E-05 34.3 11.9 94 326-421 38-139 (177)
283 PF13428 TPR_14: Tetratricopep 92.2 0.27 5.8E-06 30.0 3.7 31 461-491 1-31 (44)
284 COG5107 RNA14 Pre-mRNA 3'-end 92.2 11 0.00024 36.0 30.2 406 75-488 29-529 (660)
285 PF07035 Mic1: Colon cancer-as 92.2 4.7 0.0001 33.2 11.7 131 106-247 14-146 (167)
286 KOG4570 Uncharacterized conser 92.1 0.45 9.8E-06 42.5 6.2 105 45-151 54-165 (418)
287 TIGR02561 HrpB1_HrpK type III 92.0 1.3 2.9E-05 35.1 8.0 67 408-476 23-93 (153)
288 KOG3364 Membrane protein invol 91.8 3.2 6.9E-05 32.3 9.6 90 425-540 30-124 (149)
289 PF09613 HrpB1_HrpK: Bacterial 91.8 1.5 3.2E-05 35.5 8.2 72 406-477 21-94 (160)
290 PF10602 RPN7: 26S proteasome 91.3 2.8 6.1E-05 35.1 10.0 96 222-318 37-139 (177)
291 PF00637 Clathrin: Region in C 91.2 0.13 2.7E-06 41.6 1.9 57 126-182 12-68 (143)
292 PF02259 FAT: FAT domain; Int 91.0 14 0.00031 35.1 16.1 67 425-491 144-214 (352)
293 PRK09687 putative lyase; Provi 90.3 14 0.00031 33.7 24.8 219 52-285 34-262 (280)
294 PF13174 TPR_6: Tetratricopept 90.3 0.73 1.6E-05 25.6 4.0 28 432-459 5-32 (33)
295 PF13374 TPR_10: Tetratricopep 90.2 0.87 1.9E-05 27.0 4.6 29 428-456 3-31 (42)
296 PRK15180 Vi polysaccharide bio 90.0 5.7 0.00012 38.1 11.4 138 369-510 299-438 (831)
297 PF07719 TPR_2: Tetratricopept 89.5 0.56 1.2E-05 26.3 3.1 29 462-490 2-30 (34)
298 COG2976 Uncharacterized protei 89.3 12 0.00026 31.5 12.1 54 436-490 135-188 (207)
299 KOG1586 Protein required for f 89.2 14 0.0003 32.0 16.3 18 335-352 84-101 (288)
300 COG3629 DnrI DNA-binding trans 89.0 4.7 0.0001 36.3 9.8 77 292-368 153-236 (280)
301 PF09613 HrpB1_HrpK: Bacterial 88.9 3.5 7.6E-05 33.4 8.1 120 358-482 6-130 (160)
302 PF14432 DYW_deaminase: DYW fa 88.5 0.52 1.1E-05 36.2 3.2 38 497-546 2-39 (116)
303 COG4649 Uncharacterized protei 88.4 13 0.00028 30.6 12.7 121 29-149 67-195 (221)
304 PF00515 TPR_1: Tetratricopept 88.2 0.79 1.7E-05 25.8 3.1 29 462-490 2-30 (34)
305 PF07721 TPR_4: Tetratricopept 88.1 0.75 1.6E-05 24.1 2.7 23 463-485 3-25 (26)
306 KOG2066 Vacuolar assembly/sort 88.0 36 0.00077 35.3 25.4 161 130-319 365-532 (846)
307 KOG1920 IkappaB kinase complex 88.0 45 0.00098 36.4 23.1 27 56-82 791-819 (1265)
308 PF13431 TPR_17: Tetratricopep 87.7 1 2.2E-05 25.5 3.3 32 144-176 2-33 (34)
309 PF04097 Nic96: Nup93/Nic96; 87.3 40 0.00086 35.0 18.4 66 85-152 111-183 (613)
310 PF02284 COX5A: Cytochrome c o 87.0 6.2 0.00013 29.0 7.5 50 420-469 38-87 (108)
311 KOG0890 Protein kinase of the 86.9 74 0.0016 37.8 24.0 311 161-493 1388-1734(2382)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 86.8 5.6 0.00012 28.9 7.1 49 420-468 35-83 (103)
313 COG1747 Uncharacterized N-term 86.8 33 0.00072 33.6 21.2 177 290-473 64-251 (711)
314 PRK10941 hypothetical protein; 86.7 10 0.00022 34.3 10.6 63 429-491 183-245 (269)
315 KOG2063 Vacuolar assembly/sort 86.4 34 0.00073 36.6 15.4 24 58-81 507-530 (877)
316 KOG4648 Uncharacterized conser 86.2 2.9 6.2E-05 38.2 6.8 91 368-462 106-200 (536)
317 KOG0276 Vesicle coat complex C 86.2 22 0.00048 35.5 13.0 84 220-319 665-748 (794)
318 KOG1550 Extracellular protein 86.1 43 0.00094 34.3 20.5 248 231-491 259-539 (552)
319 COG2976 Uncharacterized protei 86.0 20 0.00043 30.3 14.2 128 326-458 56-190 (207)
320 PF14853 Fis1_TPR_C: Fis1 C-te 85.8 2.6 5.6E-05 26.9 4.7 34 432-465 6-39 (53)
321 PF13374 TPR_10: Tetratricopep 85.8 1.6 3.5E-05 25.8 3.8 28 462-489 3-30 (42)
322 COG3947 Response regulator con 85.7 3.5 7.6E-05 36.8 6.9 60 429-488 281-340 (361)
323 PF13174 TPR_6: Tetratricopept 85.5 1.1 2.4E-05 24.8 2.7 28 463-490 2-29 (33)
324 smart00028 TPR Tetratricopepti 85.1 2.1 4.6E-05 22.9 4.0 30 429-458 3-32 (34)
325 PF02284 COX5A: Cytochrome c o 85.0 8.4 0.00018 28.4 7.4 60 342-403 28-87 (108)
326 PF00637 Clathrin: Region in C 85.0 1.2 2.7E-05 35.8 3.8 87 25-114 12-98 (143)
327 PF13181 TPR_8: Tetratricopept 84.5 2.4 5.1E-05 23.7 3.8 28 462-489 2-29 (34)
328 TIGR03504 FimV_Cterm FimV C-te 84.4 2 4.4E-05 26.1 3.5 27 465-491 3-29 (44)
329 KOG4570 Uncharacterized conser 84.1 13 0.00029 33.7 9.8 101 286-388 58-164 (418)
330 TIGR02561 HrpB1_HrpK type III 84.1 6.3 0.00014 31.5 7.0 65 358-425 6-74 (153)
331 COG4649 Uncharacterized protei 83.0 25 0.00055 29.0 14.7 130 325-456 60-196 (221)
332 KOG1464 COP9 signalosome, subu 82.3 36 0.00077 30.3 19.1 222 224-452 68-328 (440)
333 KOG1920 IkappaB kinase complex 82.3 84 0.0018 34.5 23.4 30 153-183 788-819 (1265)
334 KOG0276 Vesicle coat complex C 82.1 16 0.00034 36.5 10.2 101 65-182 647-747 (794)
335 PF11207 DUF2989: Protein of u 82.0 9.7 0.00021 32.3 7.8 74 406-481 118-198 (203)
336 PRK09687 putative lyase; Provi 81.8 42 0.00091 30.7 26.0 136 322-471 140-277 (280)
337 KOG4648 Uncharacterized conser 81.6 3.1 6.8E-05 37.9 5.1 87 402-488 104-192 (536)
338 KOG1585 Protein required for f 81.6 36 0.00079 29.9 18.3 24 159-182 34-57 (308)
339 PF13762 MNE1: Mitochondrial s 81.5 26 0.00056 28.1 9.8 88 47-134 29-128 (145)
340 smart00386 HAT HAT (Half-A-TPR 81.4 3.7 8.1E-05 22.4 3.9 30 441-470 1-30 (33)
341 COG4455 ImpE Protein of avirul 81.3 12 0.00026 32.1 8.0 77 89-166 4-82 (273)
342 COG4455 ImpE Protein of avirul 80.6 8.9 0.00019 32.8 7.0 72 398-469 4-80 (273)
343 KOG4234 TPR repeat-containing 79.8 26 0.00056 29.7 9.3 102 369-470 105-211 (271)
344 PF11207 DUF2989: Protein of u 79.6 20 0.00044 30.4 8.9 73 341-414 123-197 (203)
345 PRK12798 chemotaxis protein; R 79.3 61 0.0013 31.1 21.4 180 305-487 125-321 (421)
346 PF06552 TOM20_plant: Plant sp 78.9 10 0.00022 31.5 6.8 65 422-493 63-139 (186)
347 COG4785 NlpI Lipoprotein NlpI, 78.4 43 0.00093 28.9 17.6 165 69-247 86-263 (297)
348 KOG1550 Extracellular protein 78.2 86 0.0019 32.2 16.5 82 410-493 343-429 (552)
349 KOG1308 Hsp70-interacting prot 78.0 1.7 3.6E-05 39.7 2.3 90 407-496 126-217 (377)
350 PF14561 TPR_20: Tetratricopep 77.0 9.4 0.0002 27.7 5.6 42 449-490 10-51 (90)
351 PRK11619 lytic murein transgly 77.0 1E+02 0.0022 32.3 39.2 430 23-496 67-511 (644)
352 PF08311 Mad3_BUB1_I: Mad3/BUB 76.5 20 0.00044 28.0 7.8 42 445-486 81-124 (126)
353 TIGR02508 type_III_yscG type I 76.5 28 0.00061 25.7 9.5 85 274-363 22-106 (115)
354 PF07163 Pex26: Pex26 protein; 76.4 31 0.00068 30.9 9.4 88 227-315 89-181 (309)
355 PF04910 Tcf25: Transcriptiona 76.4 65 0.0014 30.8 12.6 57 433-489 109-167 (360)
356 PF04190 DUF410: Protein of un 75.9 61 0.0013 29.3 12.2 156 67-247 2-167 (260)
357 PF06552 TOM20_plant: Plant sp 75.9 7.9 0.00017 32.1 5.4 33 443-475 51-83 (186)
358 PF10579 Rapsyn_N: Rapsyn N-te 75.8 6.5 0.00014 27.4 4.1 45 439-483 18-65 (80)
359 cd08819 CARD_MDA5_2 Caspase ac 75.3 18 0.00038 25.9 6.2 67 38-106 20-86 (88)
360 KOG0545 Aryl-hydrocarbon recep 74.8 34 0.00074 30.0 9.0 63 429-491 232-294 (329)
361 PF10345 Cohesin_load: Cohesin 74.5 1.1E+02 0.0025 31.8 33.8 160 23-183 62-252 (608)
362 PF09986 DUF2225: Uncharacteri 74.1 24 0.00053 30.7 8.4 63 429-491 120-195 (214)
363 KOG4642 Chaperone-dependent E3 73.6 9.2 0.0002 33.2 5.4 117 368-487 19-143 (284)
364 cd00923 Cyt_c_Oxidase_Va Cytoc 73.6 33 0.00072 25.1 8.8 63 339-403 22-84 (103)
365 PF13170 DUF4003: Protein of u 71.8 84 0.0018 29.0 20.1 144 340-485 78-241 (297)
366 KOG4507 Uncharacterized conser 71.4 13 0.00029 36.8 6.6 97 371-470 619-719 (886)
367 COG2909 MalT ATP-dependent tra 71.4 1.5E+02 0.0032 31.7 24.9 162 219-384 495-684 (894)
368 TIGR03504 FimV_Cterm FimV C-te 70.4 12 0.00026 22.7 4.0 24 330-353 5-28 (44)
369 PF10366 Vps39_1: Vacuolar sor 70.1 43 0.00094 25.3 7.9 27 326-352 41-67 (108)
370 PF13762 MNE1: Mitochondrial s 69.8 49 0.0011 26.6 8.4 82 88-169 41-128 (145)
371 PF09477 Type_III_YscG: Bacter 69.5 45 0.00098 25.0 8.8 78 273-354 22-99 (116)
372 PF11838 ERAP1_C: ERAP1-like C 68.2 1.1E+02 0.0023 28.7 18.1 111 375-485 146-261 (324)
373 KOG1498 26S proteasome regulat 67.8 1.1E+02 0.0025 29.0 16.4 141 398-542 134-289 (439)
374 PF08631 SPO22: Meiosis protei 66.5 1.1E+02 0.0023 28.1 25.0 19 468-486 253-271 (278)
375 PF10579 Rapsyn_N: Rapsyn N-te 66.3 17 0.00036 25.4 4.4 47 371-417 18-65 (80)
376 PF11846 DUF3366: Domain of un 65.8 26 0.00057 29.9 6.9 35 424-458 141-175 (193)
377 TIGR02508 type_III_yscG type I 65.6 53 0.0011 24.3 7.6 78 36-116 21-98 (115)
378 PF07163 Pex26: Pex26 protein; 65.4 58 0.0013 29.3 8.6 89 92-180 89-182 (309)
379 PF09670 Cas_Cas02710: CRISPR- 64.9 1.4E+02 0.003 28.9 12.6 52 335-387 142-197 (379)
380 COG3947 Response regulator con 64.5 1.1E+02 0.0025 27.8 12.0 42 36-79 149-190 (361)
381 KOG3364 Membrane protein invol 64.4 54 0.0012 25.9 7.3 72 392-463 29-107 (149)
382 KOG4507 Uncharacterized conser 64.1 46 0.00099 33.3 8.5 133 356-491 568-706 (886)
383 PF11848 DUF3368: Domain of un 63.9 27 0.00058 21.7 4.8 38 27-64 9-46 (48)
384 KOG2471 TPR repeat-containing 62.7 1.5E+02 0.0033 29.2 11.4 299 99-406 30-380 (696)
385 COG5187 RPN7 26S proteasome re 62.7 1.2E+02 0.0026 27.5 10.8 26 395-420 115-140 (412)
386 KOG1258 mRNA processing protei 62.5 1.8E+02 0.0039 29.4 24.9 96 85-183 44-141 (577)
387 KOG4077 Cytochrome c oxidase, 62.2 52 0.0011 25.5 6.7 49 420-468 77-125 (149)
388 PF14863 Alkyl_sulf_dimr: Alky 62.0 40 0.00086 27.0 6.6 63 411-476 57-119 (141)
389 COG0790 FOG: TPR repeat, SEL1 61.9 1.3E+02 0.0028 27.6 19.7 115 374-492 128-268 (292)
390 PRK10941 hypothetical protein; 61.6 37 0.00081 30.7 7.2 66 398-463 184-251 (269)
391 KOG2396 HAT (Half-A-TPR) repea 61.5 1.7E+02 0.0038 28.9 21.2 62 19-81 104-166 (568)
392 PF12862 Apc5: Anaphase-promot 61.4 36 0.00078 24.9 6.0 53 437-489 8-69 (94)
393 KOG3824 Huntingtin interacting 60.5 29 0.00064 31.4 6.1 49 438-486 127-175 (472)
394 PF11846 DUF3366: Domain of un 60.1 45 0.00098 28.4 7.3 51 371-421 120-170 (193)
395 PF10366 Vps39_1: Vacuolar sor 59.1 67 0.0015 24.3 7.1 27 88-114 41-67 (108)
396 cd08819 CARD_MDA5_2 Caspase ac 58.2 34 0.00073 24.5 4.9 34 168-202 48-81 (88)
397 COG4976 Predicted methyltransf 57.5 23 0.00049 30.7 4.7 53 438-490 6-58 (287)
398 KOG4642 Chaperone-dependent E3 57.3 1.4E+02 0.003 26.4 10.0 114 334-452 20-142 (284)
399 PF12862 Apc5: Anaphase-promot 57.1 54 0.0012 23.9 6.3 27 430-456 44-70 (94)
400 PRK15180 Vi polysaccharide bio 56.9 2E+02 0.0044 28.2 23.7 122 29-153 298-423 (831)
401 KOG0376 Serine-threonine phosp 56.9 8.9 0.00019 37.0 2.6 96 366-464 11-109 (476)
402 PF14689 SPOB_a: Sensor_kinase 56.5 26 0.00057 23.2 4.1 23 398-420 26-48 (62)
403 PF05476 PET122: PET122; Inte 55.6 60 0.0013 28.7 7.0 134 406-543 21-163 (267)
404 PF13934 ELYS: Nuclear pore co 55.3 1.5E+02 0.0032 26.1 12.6 20 330-349 114-133 (226)
405 PRK10564 maltose regulon perip 55.1 32 0.00069 31.3 5.5 45 321-365 253-298 (303)
406 KOG0292 Vesicle coat complex C 52.6 18 0.00039 37.8 4.0 76 365-456 626-701 (1202)
407 PF08311 Mad3_BUB1_I: Mad3/BUB 52.4 1.1E+02 0.0024 23.9 9.1 43 342-384 81-124 (126)
408 COG2909 MalT ATP-dependent tra 52.2 3.3E+02 0.0072 29.3 28.1 216 268-486 426-684 (894)
409 COG5191 Uncharacterized conser 52.0 33 0.00072 31.2 5.1 80 391-470 103-185 (435)
410 KOG0551 Hsp90 co-chaperone CNS 51.6 72 0.0016 29.6 7.1 86 402-487 88-179 (390)
411 PF08967 DUF1884: Domain of un 51.3 19 0.00042 25.0 2.8 25 519-543 6-30 (85)
412 PF14669 Asp_Glu_race_2: Putat 51.2 1.5E+02 0.0033 25.1 15.1 28 291-318 180-207 (233)
413 KOG2396 HAT (Half-A-TPR) repea 51.1 2.6E+02 0.0057 27.8 29.8 91 398-488 463-557 (568)
414 KOG4814 Uncharacterized conser 51.0 1.9E+02 0.0041 29.6 10.3 84 406-489 365-456 (872)
415 PF10345 Cohesin_load: Cohesin 50.9 3.1E+02 0.0068 28.6 29.9 123 25-148 105-252 (608)
416 PRK10564 maltose regulon perip 50.1 29 0.00062 31.6 4.5 37 223-260 259-295 (303)
417 KOG4077 Cytochrome c oxidase, 50.1 1.2E+02 0.0026 23.6 7.0 58 343-402 68-125 (149)
418 smart00777 Mad3_BUB1_I Mad3/BU 49.0 1.3E+02 0.0028 23.6 8.0 40 446-485 82-123 (125)
419 PF04097 Nic96: Nup93/Nic96; 48.5 3.4E+02 0.0074 28.4 26.1 82 163-247 265-353 (613)
420 KOG4279 Serine/threonine prote 47.9 3.6E+02 0.0078 28.4 16.0 172 276-460 182-399 (1226)
421 PRK09857 putative transposase; 47.9 1.2E+02 0.0026 28.0 8.3 66 430-495 209-274 (292)
422 COG4976 Predicted methyltransf 47.7 39 0.00085 29.4 4.6 55 406-460 6-62 (287)
423 KOG2034 Vacuolar sorting prote 47.6 3.9E+02 0.0084 28.7 24.3 55 59-113 362-416 (911)
424 PF10255 Paf67: RNA polymerase 47.6 39 0.00084 32.6 5.2 56 399-454 126-191 (404)
425 KOG0403 Neoplastic transformat 47.3 2.8E+02 0.0061 27.1 19.0 24 224-247 348-371 (645)
426 PF13934 ELYS: Nuclear pore co 47.1 2E+02 0.0044 25.3 12.9 106 327-441 79-186 (226)
427 PF11663 Toxin_YhaV: Toxin wit 47.0 18 0.00039 28.3 2.3 35 29-65 104-138 (140)
428 KOG4567 GTPase-activating prot 46.8 2.4E+02 0.0051 26.1 9.9 77 106-187 263-349 (370)
429 COG2912 Uncharacterized conser 46.4 81 0.0018 28.4 6.6 60 431-490 185-244 (269)
430 KOG0686 COP9 signalosome, subu 46.4 2.8E+02 0.0061 26.7 13.3 24 294-317 152-175 (466)
431 COG0735 Fur Fe2+/Zn2+ uptake r 46.3 1.1E+02 0.0024 24.6 7.0 64 309-373 6-69 (145)
432 PF06957 COPI_C: Coatomer (COP 46.0 3E+02 0.0065 26.9 10.8 43 418-460 289-333 (422)
433 KOG1464 COP9 signalosome, subu 45.9 2.3E+02 0.0049 25.5 17.4 184 233-416 39-252 (440)
434 PF11768 DUF3312: Protein of u 45.8 3.3E+02 0.0072 27.5 12.6 26 296-321 412-437 (545)
435 PF08424 NRDE-2: NRDE-2, neces 45.5 2.6E+02 0.0057 26.2 15.0 77 412-488 48-129 (321)
436 COG4259 Uncharacterized protei 44.8 84 0.0018 23.2 5.2 40 447-486 57-97 (121)
437 COG1747 Uncharacterized N-term 44.4 3.4E+02 0.0074 27.2 19.9 61 222-286 67-127 (711)
438 PF04781 DUF627: Protein of un 44.3 1.4E+02 0.003 22.7 6.8 42 445-486 62-103 (111)
439 PRK11639 zinc uptake transcrip 43.9 96 0.0021 25.8 6.5 33 339-371 40-72 (169)
440 PRK13342 recombination factor 42.7 3.4E+02 0.0073 26.6 13.7 165 138-317 154-330 (413)
441 PF11663 Toxin_YhaV: Toxin wit 42.6 35 0.00075 26.8 3.3 33 97-131 106-138 (140)
442 PF12926 MOZART2: Mitotic-spin 42.5 1.3E+02 0.0027 21.6 5.8 52 31-82 19-70 (88)
443 PF14689 SPOB_a: Sensor_kinase 42.3 73 0.0016 21.1 4.5 31 358-388 22-52 (62)
444 PF10255 Paf67: RNA polymerase 42.3 1.2E+02 0.0025 29.5 7.5 97 321-421 72-190 (404)
445 PF11848 DUF3368: Domain of un 42.2 83 0.0018 19.5 5.1 33 335-367 13-45 (48)
446 PF04190 DUF410: Protein of un 41.6 2.7E+02 0.0058 25.2 18.1 82 291-388 89-170 (260)
447 PF09868 DUF2095: Uncharacteri 41.3 99 0.0022 23.4 5.3 44 23-67 64-107 (128)
448 PF14561 TPR_20: Tetratricopep 41.2 1.4E+02 0.003 21.7 7.4 53 426-478 21-75 (90)
449 KOG4567 GTPase-activating prot 40.8 3E+02 0.0065 25.5 10.2 73 344-422 263-345 (370)
450 cd00280 TRFH Telomeric Repeat 40.7 2.2E+02 0.0047 24.1 7.6 22 366-387 118-139 (200)
451 PRK13800 putative oxidoreducta 40.1 5.6E+02 0.012 28.4 27.6 92 291-387 788-880 (897)
452 PF04034 DUF367: Domain of unk 40.1 1.8E+02 0.0039 22.7 7.6 58 395-452 66-124 (127)
453 KOG0687 26S proteasome regulat 39.4 3.2E+02 0.007 25.5 12.4 113 375-487 84-207 (393)
454 KOG2422 Uncharacterized conser 39.1 4.4E+02 0.0094 26.9 11.7 130 369-500 248-418 (665)
455 cd08326 CARD_CASP9 Caspase act 39.0 82 0.0018 22.5 4.6 31 170-200 44-74 (84)
456 COG0735 Fur Fe2+/Zn2+ uptake r 38.9 1.1E+02 0.0025 24.6 6.0 49 23-71 23-71 (145)
457 PF11817 Foie-gras_1: Foie gra 38.5 1.1E+02 0.0025 27.3 6.6 22 400-421 183-204 (247)
458 PF01475 FUR: Ferric uptake re 38.3 90 0.002 24.0 5.3 51 23-73 10-60 (120)
459 cd07153 Fur_like Ferric uptake 38.2 1.2E+02 0.0026 23.1 5.9 49 25-73 5-53 (116)
460 KOG3807 Predicted membrane pro 38.0 3.4E+02 0.0073 25.3 10.3 98 364-462 280-397 (556)
461 KOG2581 26S proteasome regulat 38.0 3.8E+02 0.0083 25.9 11.4 91 368-459 178-279 (493)
462 KOG0292 Vesicle coat complex C 38.0 5.2E+02 0.011 28.0 11.4 131 300-455 651-781 (1202)
463 COG5159 RPN6 26S proteasome re 37.8 3.2E+02 0.0069 24.9 13.8 51 331-381 10-67 (421)
464 KOG0991 Replication factor C, 37.4 2.9E+02 0.0064 24.4 11.3 147 88-263 132-279 (333)
465 PF04090 RNA_pol_I_TF: RNA pol 36.9 2.7E+02 0.0059 23.9 10.2 35 325-360 42-76 (199)
466 COG5108 RPO41 Mitochondrial DN 36.4 1.8E+02 0.004 29.9 7.8 71 60-133 33-115 (1117)
467 smart00777 Mad3_BUB1_I Mad3/BU 36.4 64 0.0014 25.2 4.0 39 72-110 80-123 (125)
468 PF07720 TPR_3: Tetratricopept 36.4 87 0.0019 18.0 5.0 17 433-449 7-23 (36)
469 PF04910 Tcf25: Transcriptiona 35.9 4E+02 0.0087 25.5 14.6 126 22-149 9-167 (360)
470 COG2137 OraA Uncharacterized p 35.4 2.7E+02 0.0058 23.3 12.7 110 308-421 54-164 (174)
471 PF11817 Foie-gras_1: Foie gra 35.4 1.5E+02 0.0032 26.5 6.9 53 365-417 184-240 (247)
472 KOG2659 LisH motif-containing 35.3 3.1E+02 0.0067 24.1 9.1 20 331-350 71-90 (228)
473 PF15469 Sec5: Exocyst complex 34.4 1.6E+02 0.0034 24.8 6.5 27 475-501 153-179 (182)
474 PF11768 DUF3312: Protein of u 34.3 2.3E+02 0.005 28.5 8.2 24 224-247 411-434 (545)
475 cd00280 TRFH Telomeric Repeat 33.5 3E+02 0.0064 23.3 9.8 54 375-428 85-144 (200)
476 cd08326 CARD_CASP9 Caspase act 33.4 1.2E+02 0.0025 21.7 4.6 63 39-105 18-80 (84)
477 PF04762 IKI3: IKI3 family; I 32.9 7.3E+02 0.016 27.6 15.9 49 434-487 879-927 (928)
478 PF12796 Ank_2: Ankyrin repeat 32.7 1.5E+02 0.0032 21.0 5.4 14 66-79 5-18 (89)
479 KOG2063 Vacuolar assembly/sort 32.6 7E+02 0.015 27.3 19.2 26 159-184 507-532 (877)
480 PRK11639 zinc uptake transcrip 32.2 1.5E+02 0.0033 24.6 5.9 39 134-172 38-76 (169)
481 PF09670 Cas_Cas02710: CRISPR- 32.2 4.8E+02 0.01 25.3 11.1 57 228-286 138-198 (379)
482 PF07064 RIC1: RIC1; InterPro 32.0 3.9E+02 0.0084 24.2 14.5 86 400-491 158-250 (258)
483 PF09477 Type_III_YscG: Bacter 32.0 2.3E+02 0.0049 21.5 9.2 80 34-116 20-99 (116)
484 COG5108 RPO41 Mitochondrial DN 31.8 2.8E+02 0.006 28.7 8.3 73 329-405 33-113 (1117)
485 PRK14956 DNA polymerase III su 31.7 4.2E+02 0.0091 26.6 9.6 98 376-494 183-281 (484)
486 PHA02875 ankyrin repeat protei 31.7 4.9E+02 0.011 25.3 16.3 136 41-182 16-158 (413)
487 cd08812 CARD_RIG-I_like Caspas 31.2 1.7E+02 0.0038 21.1 5.3 45 59-103 38-83 (88)
488 PF05119 Terminase_4: Phage te 31.1 1.9E+02 0.0041 21.2 5.9 30 514-543 57-86 (100)
489 cd07153 Fur_like Ferric uptake 30.9 98 0.0021 23.5 4.4 42 92-133 6-47 (116)
490 PRK12356 glutaminase; Reviewed 30.7 4.5E+02 0.0098 24.6 14.8 208 312-537 86-309 (319)
491 PRK09462 fur ferric uptake reg 30.7 2.6E+02 0.0055 22.6 6.9 60 112-172 8-68 (148)
492 PRK13800 putative oxidoreducta 30.6 7.8E+02 0.017 27.3 25.2 252 213-488 627-879 (897)
493 KOG4279 Serine/threonine prote 30.4 6.9E+02 0.015 26.5 11.0 110 40-149 183-315 (1226)
494 KOG1308 Hsp70-interacting prot 30.3 15 0.00032 33.9 -0.4 56 438-493 125-180 (377)
495 PF12069 DUF3549: Protein of u 30.1 4.8E+02 0.01 24.7 13.0 133 297-434 171-305 (340)
496 cd08332 CARD_CASP2 Caspase act 29.9 1.2E+02 0.0026 22.0 4.3 26 209-234 53-78 (90)
497 KOG2659 LisH motif-containing 29.6 3.9E+02 0.0085 23.5 8.2 55 365-420 70-128 (228)
498 KOG0686 COP9 signalosome, subu 29.4 5.3E+02 0.012 25.0 15.1 63 222-285 151-215 (466)
499 PF12968 DUF3856: Domain of Un 29.4 2.7E+02 0.0059 21.6 10.1 61 427-487 55-126 (144)
500 KOG0376 Serine-threonine phosp 29.3 1.1E+02 0.0024 30.0 5.0 103 331-438 11-116 (476)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-80 Score=652.28 Aligned_cols=537 Identities=34% Similarity=0.634 Sum_probs=507.2
Q ss_pred cccCCcccccccccCCcchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhH--------------------------
Q 044812 4 SSARNTFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFV-------------------------- 57 (547)
Q Consensus 4 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------------------------- 57 (547)
+.|.++|..++++ +..+|+.++..+.+.|++++|.++|++|.+.|+.||..+
T Consensus 138 ~~A~~~f~~m~~~--d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 138 VHAWYVFGKMPER--DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred HHHHHHHhcCCCC--CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 3466667766653 456788888888888888888888888877777666554
Q ss_pred ---------HHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHH
Q 044812 58 ---------STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128 (547)
Q Consensus 58 ---------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 128 (547)
+|.|+.+|++.|++++|.++|+.|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 57778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhH--
Q 044812 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV-- 206 (547)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-- 206 (547)
.+|++.|+++.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.++|..+||.+|.+|++.|++++|
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred -----------------------------------------------------------------HHHHHHHhhcCCCCh
Q 044812 207 -----------------------------------------------------------------VRSRRVFDQMKRRNV 221 (547)
Q Consensus 207 -----------------------------------------------------------------~~a~~~~~~~~~~~~ 221 (547)
++|.++|++|.++|.
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 455 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence 567888888888899
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (547)
.+|+.+|.+|++.|+.++|+.+|++| .. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m-~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQM-LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHH-Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 99999999999999999999999999 44 59999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 044812 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381 (547)
Q Consensus 302 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 381 (547)
|++.|++++|.++|+++ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++
T Consensus 534 y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 99999999999999998 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 382 YNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++.+.+++.+++|+++
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 99998777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCcC
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASP 541 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 541 (547)
..|..|++.|.+.|+|++|.++.+.|++.|+.++|+++|+.+.+++|.|+.++++||+.+++++.|+++..+|++.||.|
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~ 771 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAG 771 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 044812 542 HLGKM 546 (547)
Q Consensus 542 ~~~~~ 546 (547)
|++++
T Consensus 772 ~~~~~ 776 (857)
T PLN03077 772 SESSS 776 (857)
T ss_pred Ccchh
Confidence 98753
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.1e-78 Score=620.25 Aligned_cols=520 Identities=27% Similarity=0.411 Sum_probs=488.9
Q ss_pred CCcchHHHHHHHHHhccCchHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCchhHHHHhccCC----CCCcchHHHH
Q 044812 18 YTSATVQHFLQVSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNSIQ----HKDVYLYNSL 92 (547)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l 92 (547)
.+..+....+..+...|++.+|.++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|. .||..+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344567888888888999999999999988765 67899999999999999999999999888885 3788899999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 93 INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 93 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
+.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999864 788899999999999999999999999999889899999999999999999999
Q ss_pred HHHHHHhccCCC----CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHch
Q 044812 173 SECLNLFDEMPQ----RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248 (547)
Q Consensus 173 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 248 (547)
+.+.+++..+.+ +|..+|+.++.+|++.|++++ |.++|+.|.++|..+||.||.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~---A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M- 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED---ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM- 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH---HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH-
Confidence 888888776653 677889999999999999888 888899999999999999999999999999999999999
Q ss_pred hcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHH
Q 044812 249 LKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWS 328 (547)
Q Consensus 249 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 328 (547)
.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+++|++.|++++|.++|++|. .||..+||
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n 395 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWN 395 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc
Q 044812 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408 (547)
Q Consensus 329 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (547)
+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 409 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
|++++|.+++++|+..|+..+|+.|+.+|...|+++.|..+++++.+.+|.+..+|..|+++|.+.|++++|.++++.|+
T Consensus 476 G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCCCC
Q 044812 489 DRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546 (547)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 546 (547)
+.|+.+.|+++|+.+.+.+|.|++++.+||+.+++++.+.++..+|++.||.||+.++
T Consensus 556 ~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~ 613 (697)
T PLN03081 556 RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENEL 613 (697)
T ss_pred HcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchh
Confidence 9999999999999999999999999999999999999999999999999999998764
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-68 Score=561.88 Aligned_cols=504 Identities=28% Similarity=0.467 Sum_probs=458.1
Q ss_pred cchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhc
Q 044812 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKN 99 (547)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 99 (547)
..++..++..+...+.+..+.+++..+.+.|..++...+|.++..|++.|+++.|.++|+.|++||..+||.+|.+|++.
T Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~ 165 (857)
T PLN03077 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA 165 (857)
T ss_pred hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhC
Confidence 33445555555555555566666666666666666677788899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHh
Q 044812 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179 (547)
Q Consensus 100 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 179 (547)
|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.|+.+|+++|++++|.++|
T Consensus 166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHcCCCchhH-----------------------------------------------------
Q 044812 180 DEMPQRNVGSWNVRISGHASSGDFSLV----------------------------------------------------- 206 (547)
Q Consensus 180 ~~~~~~~~~~~~~li~~~~~~g~~~~a----------------------------------------------------- 206 (547)
++|.++|..+||.+|.+|++.|+.++|
T Consensus 246 ~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred hcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 999999999999999999888887776
Q ss_pred --------------HHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCC
Q 044812 207 --------------VRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272 (547)
Q Consensus 207 --------------~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 272 (547)
.+|.++|++|..||..+|+.+|.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.|+
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCCCceeHHHHHHHHhccch
Confidence 55888999999999999999999999999999999999999 899999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
++.+.++++.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|..+|++|..
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999999986
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044812 353 LGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA 432 (547)
Q Consensus 353 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 432 (547)
+++||..||+.++.+|++.|.++.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|+.
T Consensus 484 -~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~ 559 (857)
T PLN03077 484 -TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNI 559 (857)
T ss_pred -CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHH
Confidence 59999999999999999999999999999999877 99999999999999999999999999999998 799999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHcCCCHHHHHHHHHHHH-hCCCccCCccceEeeCCEEEEE
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLE-PENPSNYVSLSNLYASSRRWDAVAELRTMMK-DRGLKKSPGCSWISIHGKTHCF 510 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~~~~~~~~ 510 (547)
++.+|++.|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+...+...+
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv------- 632 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV------- 632 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH-------
Confidence 9999999999999999999999876 5578899999999999999999999999998 789998876544433
Q ss_pred eeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCC
Q 044812 511 SVADKAHPCSVSIYEMLDDLILIMRGAAASPHLG 544 (547)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 544 (547)
..+...++.+++.+.+ ++| +.+||..
T Consensus 633 -~~l~r~G~~~eA~~~~----~~m---~~~pd~~ 658 (857)
T PLN03077 633 -DLLGRAGKLTEAYNFI----NKM---PITPDPA 658 (857)
T ss_pred -HHHHhCCCHHHHHHHH----HHC---CCCCCHH
Confidence 3444567777777777 444 4667754
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-66 Score=535.36 Aligned_cols=513 Identities=13% Similarity=0.139 Sum_probs=471.5
Q ss_pred ccccCCcchHHHHHHHHHhccCchHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHH
Q 044812 14 TSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGH-ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL 92 (547)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 92 (547)
.....+.+.+..+...+.++|++.+|.++|++|.+.|+ +++...++.++..|.+.|.+++|.++|+.|..|+..+|+.+
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 34444566688888888899999999999999999996 67888899999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 93 INGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 93 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCC----CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC------CCChhhHHHHHHHHHHCCCHHHHHH
Q 044812 173 SECLNLFDEMPQ----RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK------RRNVYAWTAMINGYVQNGDLDEALV 242 (547)
Q Consensus 173 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~ 242 (547)
++|.++|++|.+ ||..+|+.+|.+|++.|++++ |.++|.+|. .||..+|+++|.+|++.|++++|.+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de---A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR---AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999964 789999999999999999998 778887773 5899999999999999999999999
Q ss_pred HHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---C
Q 044812 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS---S 319 (547)
Q Consensus 243 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~ 319 (547)
+|++| .+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++| +
T Consensus 601 lf~~M-~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 601 VYQMI-HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHH-HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999999874 6
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 320 FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 320 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~ 758 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYS 758 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999876 9999999999
Q ss_pred HHHHHhHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHH
Q 044812 400 CVVDMLGRAGQLDRALDFIKTM---PVEPSPSIWGALVSASVM----H-------------------GNSEMQDLAYKSL 453 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~ 453 (547)
.++.+|++.|++++|.+++++| ++.||..+|+.++..|.+ . +..+.|..+|++|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 9999999999999999999998 688999999999876432 1 2246799999999
Q ss_pred HhhC-CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHH
Q 044812 454 IQLE-PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532 (547)
Q Consensus 454 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (547)
.+.+ .++..+|..++.++...+..+.+..+++.|...+..++...+..++.+ .... ..++...+ +
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g--------~~~~--~~~A~~l~----~ 904 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG--------FGEY--DPRAFSLL----E 904 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh--------hccC--hHHHHHHH----H
Confidence 9987 668889999999998999999999999999888887777777666643 2111 24677777 8
Q ss_pred HHHHcCCcCCCCC
Q 044812 533 IMRGAAASPHLGK 545 (547)
Q Consensus 533 ~~~~~~~~p~~~~ 545 (547)
+|...|+.|+..+
T Consensus 905 em~~~Gi~p~~~~ 917 (1060)
T PLN03218 905 EAASLGVVPSVSF 917 (1060)
T ss_pred HHHHcCCCCCccc
Confidence 9999999999753
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-64 Score=522.27 Aligned_cols=484 Identities=17% Similarity=0.217 Sum_probs=445.8
Q ss_pred cccCCcccccccccCCcch---HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhcc
Q 044812 4 SSARNTFALVTSRNYTSAT---VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS 80 (547)
Q Consensus 4 ~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 80 (547)
++|.++|+.+..++..+++ +..++..+...|.+.+|..+++.|.. ||..+|+.++.+|++.|+++.|.++|+.
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 5688889999887764443 56778888889999999999998875 9999999999999999999999999999
Q ss_pred CCC----CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCch
Q 044812 81 IQH----KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156 (547)
Q Consensus 81 ~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 156 (547)
|.+ ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 964 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCC------CCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC----CCChhhHHH
Q 044812 157 ILANSLMSMYVKCGKFSECLNLFDEMP------QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK----RRNVYAWTA 226 (547)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~----~~~~~~~~~ 226 (547)
.+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++ |.++|+.|. .|+..+|+.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde---A~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR---AKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHcCCCCChHHHHH
Confidence 999999999999999999999999995 4788999999999999999999 777777775 467899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 044812 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306 (547)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 306 (547)
+|.+|++.|++++|.++|++| ...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|
T Consensus 620 LI~ay~k~G~~deAl~lf~eM-~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcC---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044812 307 SLDCARRVFEDS---SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383 (547)
Q Consensus 307 ~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 383 (547)
++++|.++|++| ++.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999875 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHhHh----c-------------------CCHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 044812 384 SVINTYRIKPTTEICACVVDMLGR----A-------------------GQLDRALDFIKTM---PVEPSPSIWGALVSAS 437 (547)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~ 437 (547)
+|.+. |+.||..+|+.++..|.+ + +..++|..+|++| ++.||..||+.++.++
T Consensus 779 ~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 779 QAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 99877 999999999999876432 1 2346799999999 7899999999999888
Q ss_pred HHcCCHHHHHHHHHHHHhh-CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCcc
Q 044812 438 VMHGNSEMQDLAYKSLIQL-EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGC 498 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 498 (547)
+..+....+..+++.+... .+++..+|+.|+.++.+. .++|..++++|...|+.|+...
T Consensus 858 ~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 858 QLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred cccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCccc
Confidence 8889999998888887654 366788999999998432 3689999999999999988753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-56 Score=462.70 Aligned_cols=464 Identities=13% Similarity=0.166 Sum_probs=418.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC-----CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchH
Q 044812 50 GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-----KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL 124 (547)
Q Consensus 50 g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 124 (547)
...++..+|+.++..|.+.|++++|+++|+.|.. |+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 3456778999999999999999999999999853 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC----CChhhHHHHHHHHHcC
Q 044812 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ----RNVGSWNVRISGHASS 200 (547)
Q Consensus 125 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 200 (547)
+.++..|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+ ++..+|+.++.++++.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 999999999999999999999995 58999999999999999999999999999964 7888999999999999
Q ss_pred CCchhHHHHHHHHhhc----CCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhH
Q 044812 201 GDFSLVVRSRRVFDQM----KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGG 276 (547)
Q Consensus 201 g~~~~a~~a~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 276 (547)
|..+. +.+++..+ ..+|..+|+.|+.+|++.|++++|.++|++| ..+|..+|+.++.+|++.|+.++|
T Consensus 238 ~~~~~---~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-----~~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 238 GSARA---GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM-----PEKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred CcHHH---HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC-----CCCChhHHHHHHHHHHhCCCHHHH
Confidence 99888 44444333 3579999999999999999999999999999 357999999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044812 277 KQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353 (547)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 353 (547)
..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++.. .++.||..+|++|+.+|++.|++++|.++|++|.
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-- 387 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-- 387 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 99999999999999999999999999999999999999976 4678999999999999999999999999999995
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCCHHH
Q 044812 354 GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM----PVEPSPSI 429 (547)
Q Consensus 354 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~ 429 (547)
.||..+|+.+|.+|++.|+.++|.++|++|.+. |+.||..+|+.++.+|.+.|.+++|.++|+.| ++.|+..+
T Consensus 388 --~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 388 --RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred --CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 479999999999999999999999999999877 99999999999999999999999999999998 57899999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEE
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHC 509 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 509 (547)
|+.++.+|++.|++++|.++++++. ..++..+|..|+.+|...|+++.|..+++++.+. .|+....+..+
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L------ 534 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVL------ 534 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHH------
Confidence 9999999999999999999988752 2346778999999999999999999999998644 34322222222
Q ss_pred EeeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCCC
Q 044812 510 FSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGK 545 (547)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 545 (547)
+..+...++.+++.+.+ +.|++.|+++.+++
T Consensus 535 -~~~y~~~G~~~~A~~v~----~~m~~~g~~k~~g~ 565 (697)
T PLN03081 535 -LNLYNSSGRQAEAAKVV----ETLKRKGLSMHPAC 565 (697)
T ss_pred -HHHHHhCCCHHHHHHHH----HHHHHcCCccCCCe
Confidence 34566778888888888 89999999866653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.3e-30 Score=278.85 Aligned_cols=476 Identities=12% Similarity=0.085 Sum_probs=229.7
Q ss_pred ccCCcccccccccCCcc-hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC
Q 044812 5 SARNTFALVTSRNYTSA-TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83 (547)
Q Consensus 5 ~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 83 (547)
+|.+.|+.+.+.++..+ .+..+...+...|++.+|...++.+.+... ........++..+.+.|++++|.++++.+..
T Consensus 381 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555544443322 245555555666666666666666655531 1233334445555555566666555555532
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHH
Q 044812 84 ---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160 (547)
Q Consensus 84 ---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 160 (547)
++...|+.+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|...++.+.+.+ +.+..++.
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 537 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAIL 537 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 2344555555555555555555555555554321 123344445555555555555555555555443 23444555
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC---CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCH
Q 044812 161 SLMSMYVKCGKFSECLNLFDEMPQ---RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237 (547)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 237 (547)
.+...+.+.|+.++|...++++.+ .+...+..++..+...|+++++....+......+.+...|..++.++...|++
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 555555555555555555555432 12234444555555555555522222222222233444555555555555555
Q ss_pred HHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044812 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (547)
++|+..|+.+ .+. .+.+...+..+..++...|++++|...++.+.+.. +.+...+..++..+...|++++|.++++.
T Consensus 618 ~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 618 NKAVSSFKKL-LAL-QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHH-HHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554 221 12233344445555555555555555555554433 23344445555555555555555555544
Q ss_pred CC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCch
Q 044812 318 SS--FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT 395 (547)
Q Consensus 318 ~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 395 (547)
+. .+.+...+..+...+...|++++|...|+++... .|+..++..+..++...|++++|.+.++.+.+. .+.+.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~ 770 (899)
T TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDA 770 (899)
T ss_pred HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 21 0223334444445555555555555555555443 233344444444555555555555555554432 12244
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
..+..+...|...|++++|...|+++ .. +++..++..+...+...|+ .+|+..++++.+..|.++..+..++.++..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 44444555555555555555555444 11 1233344444444444444 445555555554444444444445555555
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 044812 474 SRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~ 491 (547)
.|++++|.++++++.+.+
T Consensus 850 ~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIA 867 (899)
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 555555555555544433
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.6e-30 Score=276.53 Aligned_cols=473 Identities=11% Similarity=0.053 Sum_probs=367.0
Q ss_pred ccCCcccccccccCC-cchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC
Q 044812 5 SARNTFALVTSRNYT-SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83 (547)
Q Consensus 5 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 83 (547)
+|.+.+......++. ...+..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+
T Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 347 EAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 344455555544443 3346777888888889999988888887764 44567777888888888899988888887754
Q ss_pred --C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHH
Q 044812 84 --K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN 160 (547)
Q Consensus 84 --~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 160 (547)
| +...+..++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|...|+++.+.. +.+...+.
T Consensus 426 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 503 (899)
T TIGR02917 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAA 503 (899)
T ss_pred hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHH
Confidence 2 3345666777888889999999988888764 34466788888888888899999999988888764 44566777
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC---CChhhHHHHHHHHHcCCCchhHHHHHHHHhhc---CCCChhhHHHHHHHHHHC
Q 044812 161 SLMSMYVKCGKFSECLNLFDEMPQ---RNVGSWNVRISGHASSGDFSLVVRSRRVFDQM---KRRNVYAWTAMINGYVQN 234 (547)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~---~~~~~~~~~~li~~~~~~ 234 (547)
.+...+...|++++|.+.|+++.+ .+...+..+...+.+.|+.++ |...+.++ ...+...+..++..+.+.
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE---AVAWLEKAAELNPQEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCccchhHHHHHHHHHHHC
Confidence 788888888999999888888754 345577788888888888888 55555444 345667778888888889
Q ss_pred CCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044812 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (547)
|++++|..+++.+ .. ..+.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...
T Consensus 581 ~~~~~A~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 581 GQLKKALAILNEA-AD-AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred CCHHHHHHHHHHH-HH-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998888 33 235566788888888888899999999888888765 44566778888888888999999888
Q ss_pred HhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC
Q 044812 315 FEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIK 392 (547)
Q Consensus 315 ~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 392 (547)
|++. .. +.+..++..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.|+.+... .
T Consensus 658 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~ 733 (899)
T TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---A 733 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---C
Confidence 8763 22 3346778888888888899999999988888764 446677777888888889999999988888754 4
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 393 PTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 393 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
|+..++..++.++.+.|++++|.+.++++ ..+.+...+..+...|...|+.++|.+.|+++.+..|+++.++..++.+
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 813 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWL 813 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 55577777888888889999998888876 2234566888888888888999999999999988888888888888888
Q ss_pred HHcCCCHHHHHHHHHHHHhCC
Q 044812 471 YASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+...|+ ++|.++++++.+..
T Consensus 814 ~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 814 YLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHhcCc-HHHHHHHHHHHhhC
Confidence 888888 78888888887643
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=5.9e-23 Score=222.80 Aligned_cols=521 Identities=11% Similarity=0.067 Sum_probs=323.2
Q ss_pred cccCCcccccccccCCcchH-----------------HHHHHHHHhccCchHHHHHHHHHHHhCCCCChhH-HHHHHHHH
Q 044812 4 SSARNTFALVTSRNYTSATV-----------------QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFV-STKLITAY 65 (547)
Q Consensus 4 ~~a~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~ 65 (547)
++|...++++.+.+|..+.+ ...+.++...|++++|.+.++.+.+.+ +|+... ........
T Consensus 79 ~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~ 157 (1157)
T PRK11447 79 DGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVA 157 (1157)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHh
Confidence 45666677777767666553 223446778899999999999988764 444322 11222223
Q ss_pred HhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCC------------------C------
Q 044812 66 ALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNV------------------S------ 118 (547)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~------------------~------ 118 (547)
...|+.++|++.++.+.+ | +...+..+...+...|++++|++.|+++.+... .
T Consensus 158 ~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 158 KLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred hCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 345899999999998865 3 455677888888889999999999988754321 0
Q ss_pred --------CCcchH---------------------HHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044812 119 --------PDDFTL---------------------ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169 (547)
Q Consensus 119 --------p~~~~~---------------------~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 169 (547)
|+...+ ......+...|++++|...|++.++.. +.+...+..+..++.+.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 111100 011334567789999999999998865 44778888899999999
Q ss_pred CChHHHHHHhccCCC--CCh---hhHHH------------HHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 044812 170 GKFSECLNLFDEMPQ--RNV---GSWNV------------RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYV 232 (547)
Q Consensus 170 g~~~~A~~~~~~~~~--~~~---~~~~~------------li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~ 232 (547)
|++++|+..|++..+ |+. ..|.. ....+.+.|++++|....+-.....+.+...+..+...+.
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~ 396 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM 396 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999988765 221 11221 2345678899998555555555555567778888999999
Q ss_pred HCCCHHHHHHHHHHchhcCCCCCC-hHHHHhHHHHh------------------------------------------hc
Q 044812 233 QNGDLDEALVLFLEMQLKDRIEPN-KVSLVSVLPTC------------------------------------------SS 269 (547)
Q Consensus 233 ~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~------------------------------------------~~ 269 (547)
..|++++|++.|++. .+. .|+ ...+..+...+ ..
T Consensus 397 ~~g~~~eA~~~y~~a-L~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 397 ARKDYAAAERYYQQA-LRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HCCCHHHHHHHHHHH-HHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999988 442 233 33343333333 23
Q ss_pred cCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHH
Q 044812 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLY 347 (547)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 347 (547)
.|++++|...+++..+.. +-+...+..+...|.+.|++++|...+++. ...| +...+..+...+...++.++|...+
T Consensus 474 ~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 344444444444444433 223334444444555555555555554431 1112 2222223333334444445554444
Q ss_pred HHHHHcCCCCCHH---------HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 044812 348 NKMVCLGSKPDII---------TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418 (547)
Q Consensus 348 ~~m~~~g~~p~~~---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 418 (547)
+.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 4432211111110 112233445556666666666551 1345566777888888999999999998
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCC
Q 044812 419 KTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496 (547)
Q Consensus 419 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 496 (547)
++. ...| +...+..++..+...|+.++|++.++++.+..|+++..+..++.++...|++++|.++++++....-..++
T Consensus 627 ~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 627 QRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 887 3445 46688888888999999999999999888888888888888999999999999999999988765432222
Q ss_pred ccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCcCC
Q 044812 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542 (547)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 542 (547)
......+.. .....+...++.+++.+.+.+. |...|..|+
T Consensus 707 ~~~~a~~~~---~~a~~~~~~G~~~~A~~~y~~A---l~~~~~~~~ 746 (1157)
T PRK11447 707 SMESALVLR---DAARFEAQTGQPQQALETYKDA---MVASGITPT 746 (1157)
T ss_pred chhhHHHHH---HHHHHHHHcCCHHHHHHHHHHH---HhhcCCCCC
Confidence 111110000 0011123456677777777544 444566554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=3.4e-21 Score=209.14 Aligned_cols=490 Identities=14% Similarity=0.114 Sum_probs=314.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--CCcchH-----------
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLY----------- 89 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~----------- 89 (547)
+..-+.+....++.+.|.+.++.+.... +.++..+..++..+.+.|+.++|.+.++++.+ |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 3444455666677777877777776664 44677777777777788888888887777754 332211
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcc-hHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 044812 90 ------NSLINGYVKNHGHNEALELFSNMYYSNVSPDDF-TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162 (547)
Q Consensus 90 ------~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 162 (547)
..+...+.+.|++++|++.|+.+.+.+ +|+.. ............++.++|...++.+.+.. +.+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 222335667788888888888777543 22221 11111222234577778888888777764 4455666777
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCh------hh-----------------H-----------------------------
Q 044812 163 MSMYVKCGKFSECLNLFDEMPQRNV------GS-----------------W----------------------------- 190 (547)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~------~~-----------------~----------------------------- 190 (547)
...+...|+.++|+..++++.+... .. +
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 7777777887777777776532100 00 0
Q ss_pred -----HHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCC-CCCChHHH----
Q 044812 191 -----NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR-IEPNKVSL---- 260 (547)
Q Consensus 191 -----~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~~p~~~~~---- 260 (547)
......+...|++++|....+-.-...+.+...+..+..++.+.|++++|+..|++. .+.. -.++...+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~A-l~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKA-LALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCccchhHHHHHH
Confidence 011234556677777443333333334457778888888888888888888888887 3321 11111111
Q ss_pred --------HhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCC-hhhHH--
Q 044812 261 --------VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKD-AITWS-- 328 (547)
Q Consensus 261 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~-- 328 (547)
......+.+.|++++|...++++.+.. +.+...+..+..++...|++++|++.|++. ...|+ ...+.
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 122345667788888888888888765 445566777788888888888888888752 22232 22221
Q ss_pred ----------------------------------------HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 044812 329 ----------------------------------------SIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLS 367 (547)
Q Consensus 329 ----------------------------------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~ 367 (547)
.+...+...|++++|...|++..+. .| +...+..+..
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 2233455678888999999888875 44 4566777888
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCchhHHHH--------------------------------------------HHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICAC--------------------------------------------VVD 403 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------l~~ 403 (547)
.+...|++++|...++++.+.. +.+...+.. +..
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 8889999999999999887542 112322222 233
Q ss_pred HhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
.+...|+.++|..+++.-+ ++...+..+...+.+.|++++|+..|+++++.+|.++..+..++.+|...|++++|.+.
T Consensus 582 ~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455566666666666332 34456777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHH
Q 044812 484 RTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532 (547)
Q Consensus 484 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (547)
++...+.. |+....+..+ .......++.+++.+.++++..
T Consensus 660 l~~ll~~~--p~~~~~~~~l-------a~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 660 LAKLPATA--NDSLNTQRRV-------ALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHhccC--CCChHHHHHH-------HHHHHhCCCHHHHHHHHHHHhh
Confidence 99876543 2221111100 1112235567777777755544
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-22 Score=187.96 Aligned_cols=441 Identities=15% Similarity=0.144 Sum_probs=347.8
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhc
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKN 99 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~ 99 (547)
...++.-+.+.|++.+|++-...+-+.+ +.+....-.+-..+....+.+....--....+ .-..+|+.+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 5667777778899999987766555554 33334444444456666666655443322222 2456788888888889
Q ss_pred CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHH
Q 044812 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL-ANSLMSMYVKCGKFSECLNL 178 (547)
Q Consensus 100 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~ 178 (547)
|++++|+.+++.+.+...+ ....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+...|++.+|...
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998875322 5677888888999999999999998888775 455443 34455556668888888888
Q ss_pred hccCCC--CC-hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC---CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCC
Q 044812 179 FDEMPQ--RN-VGSWNVRISGHASSGDFSLVVRSRRVFDQMKR---RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252 (547)
Q Consensus 179 ~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 252 (547)
+.+..+ |. .+.|+.|...+..+|+... |...|++..+ .-...|-.|...|-..+.+++|+..|.+. ..
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~---aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA-l~-- 280 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWL---AIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRA-LN-- 280 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHH---HHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHH-Hh--
Confidence 877654 33 3478888888888888887 6666666553 34578999999999999999999999887 33
Q ss_pred CCCC-hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCC-hhhHHH
Q 044812 253 IEPN-KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKD-AITWSS 329 (547)
Q Consensus 253 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~ 329 (547)
..|+ ...+..+...|...|.++.|...+++..+.. +.=...|+.|..++...|++.+|.+.|++ +...|+ ..+.+.
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 4554 5678888888999999999999999998875 33466899999999999999999999987 333444 567899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHh
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGR 407 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 407 (547)
|...|...|.++.|..+|....+ +.|. ...++.|...|-.+|++++|+..+++.. .+.|+ ...|+.+...|..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHH
Confidence 99999999999999999999988 4665 5678999999999999999999999887 66785 5789999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHH
Q 044812 408 AGQLDRALDFIKTM-PVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479 (547)
Q Consensus 408 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (547)
.|+.+.|.+.+.+. .+.|.. ..++.|...|...|++.+|+..|+.+++++|+.|.+|..++.++.-..+|.+
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999887 667764 4889999999999999999999999999999999999999988766655544
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=7.4e-20 Score=189.99 Aligned_cols=226 Identities=11% Similarity=0.009 Sum_probs=174.2
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCChhhHHHHHHHHHhc
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS-FNKDAITWSSIVSGYGLH 337 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~ 337 (547)
.+..+..++.. ++.++|...+....... |+......+...+...|++++|...|++.. ..|+...+..+...+.+.
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~ 555 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHC
Confidence 34444444443 56666777666666543 444333344555568899999999998643 235555667777888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 044812 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
|++++|...+++..+.. +++...+..+...+...|++++|...+++..+. .|+...+..+...+.+.|++++|...
T Consensus 556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988764 223333334444555679999999999999854 57788899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 418 IKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 418 ~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+++. ...|+ ...+..+..++...|+.++|+.+++++++..|.++..+..++.++...|++++|...+++..+..
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9987 45564 55888888899999999999999999999999999999999999999999999999999987654
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=2.1e-21 Score=179.51 Aligned_cols=448 Identities=14% Similarity=0.104 Sum_probs=351.9
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCC-cch--HHHHHHHHHhcCChhHH
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKD-VYL--YNSLINGYVKNHGHNEA 105 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~ll~~~~~~~~~~~A 105 (547)
.+-..-....+-.+.++...... .......|..-.-+.|++.+|++.....-..| ..+ .-.+-..+.+..+.+..
T Consensus 24 ~ld~~~~s~~s~~v~qq~~~t~~--~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s 101 (966)
T KOG4626|consen 24 KLDQSVSSSGSSSVLQQFNKTHE--GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKS 101 (966)
T ss_pred HhccCcccccchHHHHHhccCCc--cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhh
Confidence 33333344444444444433321 12224556666778899999999877664322 111 22223445666677666
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC
Q 044812 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185 (547)
Q Consensus 106 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 185 (547)
..--....+.. ..-..+|..+.+.+...|+++.|+..++.+++.. +..+..|..+..++...|+.+.|...|.+..+-
T Consensus 102 ~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 102 SAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred hhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 55544444432 2356789999999999999999999999999875 346788999999999999999999999888764
Q ss_pred Ch--hh-HHHHHHHHHcCCCchhHHHHHHHHhhcC---CCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh-H
Q 044812 186 NV--GS-WNVRISGHASSGDFSLVVRSRRVFDQMK---RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK-V 258 (547)
Q Consensus 186 ~~--~~-~~~li~~~~~~g~~~~a~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~ 258 (547)
|+ .. .+.+...+...|++++ |...+.+.. .--...|+.|...+-.+|+...|++.|++. .+ +.|+. .
T Consensus 180 nP~l~ca~s~lgnLlka~Grl~e---a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA-vk--ldP~f~d 253 (966)
T KOG4626|consen 180 NPDLYCARSDLGNLLKAEGRLEE---AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA-VK--LDPNFLD 253 (966)
T ss_pred CcchhhhhcchhHHHHhhcccch---hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh-hc--CCCcchH
Confidence 43 32 3344455666788888 444444433 234678999999999999999999999988 44 55653 5
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCC-hhhHHHHHHHHHh
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKD-AITWSSIVSGYGL 336 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~li~~~~~ 336 (547)
.|..+...|...+.++.|...+.+..... +....++..+...|..+|.++.|+..|++ +...|+ ...|+.|..++-.
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD 332 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Confidence 68889999999999999999998887765 44567788889999999999999999987 555666 5689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRA 414 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 414 (547)
.|++.+|.+.|.+.... .|+ ....+.|...+...|.+++|..+|....+ +.| -...++.|...|..+|++++|
T Consensus 333 ~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred ccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHH
Confidence 99999999999999885 555 56889999999999999999999998874 345 467789999999999999999
Q ss_pred HHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 415 LDFIKTM-PVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 415 ~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
+.-+++. .++|+.. .|+.++..|...|+...|.+.+.+++..+|.-..++..|+.+|...|+..+|+.-++...+...
T Consensus 408 i~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 408 IMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999987 7889865 9999999999999999999999999999999999999999999999999999999999876543
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=3e-19 Score=182.34 Aligned_cols=421 Identities=10% Similarity=-0.008 Sum_probs=281.4
Q ss_pred HHHHHHHHHhcCCchhHHHHhccCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCC
Q 044812 58 STKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135 (547)
Q Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 135 (547)
+......+.+.|++++|+..|++..+ |+...|..+..+|.+.|++++|++.++..++.+. .+...+..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcC
Confidence 33455666777777777777777543 5666677777777777777777777777776431 13446666777777777
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhh
Q 044812 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215 (547)
Q Consensus 136 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~ 215 (547)
++++|...+......+...+.. ...++.-+........+...++.-. .+..++..+.. +........ ...-+..
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~---~~~~~~~ 282 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKP---RPAGLED 282 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCc---chhhhhc
Confidence 7777777666554433111111 1111111111111223333333221 22223332222 211111111 0011111
Q ss_pred cCCCC---hhhHHHHHHH---HHHCCCHHHHHHHHHHchhcCC-CCC-ChHHHHhHHHHhhccCCchhHHHHHHHHHHcC
Q 044812 216 MKRRN---VYAWTAMING---YVQNGDLDEALVLFLEMQLKDR-IEP-NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287 (547)
Q Consensus 216 ~~~~~---~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 287 (547)
..+.+ ...+..+... ....+++++|++.|+.. ...+ ..| ....+..+...+...|++++|...++...+..
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a-l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKA-LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH-HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 11101 1111111111 12347899999999998 4433 334 34567778888889999999999999998875
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044812 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365 (547)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 365 (547)
+.....|..+..++...|++++|...|++. .. +.+...|..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 334667888999999999999999999862 22 3456788999999999999999999999998863 2256777888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHH
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSP-------S-IWGALVSA 436 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~l~~~ 436 (547)
..++.+.|++++|+..|++..+. .+.+...++.+...+...|++++|...|++. ...|+. . .++.....
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 88899999999999999999864 2346788899999999999999999999986 333421 1 12222223
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+...|++++|.++++++++.+|.+...+..++.++.+.|++++|++.+++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344699999999999999999999889999999999999999999999998654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2e-20 Score=181.53 Aligned_cols=272 Identities=14% Similarity=0.113 Sum_probs=186.3
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC---hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHH
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN---KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 298 (547)
.++..+...+...|++++|..+++.+ ...+..++ ...+..+...+.+.|+++.|..++..+.+.. +.+..++..+
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 147 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNL-LSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQL 147 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 34444444555555555555555544 22211111 1234444445555555555555555554432 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHhcCC-CCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 299 IDMYSKCGSLDCARRVFEDSS-FNKD------AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 299 ~~~~~~~g~~~~A~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
+.++.+.|++++|.+.++.+. ..|+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHH
Confidence 777777777777777766531 0111 1234567777888899999999999988753 2245677778888999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAY 450 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 450 (547)
.|++++|.++++++.+. +......++..++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|..++
T Consensus 227 ~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 227 QGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred CCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999998764 21222456788899999999999999999987 45677777788999999999999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCccCCcc
Q 044812 451 KSLIQLEPENPSNYVSLSNLYAS---SRRWDAVAELRTMMKDRGLKKSPGC 498 (547)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 498 (547)
+++.+..|+++ .+..++..+.. .|+.+++..++++|.++++.++|.+
T Consensus 306 ~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 306 REQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 99999988765 56555655553 5699999999999999999999863
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=1.3e-18 Score=180.78 Aligned_cols=483 Identities=10% Similarity=-0.020 Sum_probs=299.2
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--CCcchHHHHHHHHHhcCChhH
Q 044812 27 LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNSLINGYVKNHGHNE 104 (547)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~ 104 (547)
...+...|++++|...++..++.. |-++.++..|...|.+.|++++|+..+++..+ |+-..|..++..+ +++.+
T Consensus 51 a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 51 ALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVK 126 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChh
Confidence 334444589999999999998886 44588889999999999999999999998865 4333344333222 88889
Q ss_pred HHHHHHHhhhCCCCCCcchHHHHHHHH-----ccCCCcHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCChHHHHHH
Q 044812 105 ALELFSNMYYSNVSPDDFTLATISKLS-----GEIKDLNVGMLIHGLSIKIGFVVDVILANSL-MSMYVKCGKFSECLNL 178 (547)
Q Consensus 105 A~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~ 178 (547)
|..+++++.+.... +..++..+.... ....+.+.|...++ .......|+..+.... .++|.+.|++++|++.
T Consensus 127 A~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 127 SVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999876422 334444444430 12233456666665 3333333345444444 7888889999999999
Q ss_pred hccCCCCChh---hHHHHHHHHHc-CCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCC
Q 044812 179 FDEMPQRNVG---SWNVRISGHAS-SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254 (547)
Q Consensus 179 ~~~~~~~~~~---~~~~li~~~~~-~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 254 (547)
++++.+.+.. -...+...|.. .++ +. +..+++...+.+...+..++..|.+.|+.++|.++++++.....-.
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~---a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DR---LLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HH---HHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 8888764332 34455556666 355 43 5555555445678888888888999999999998888872111111
Q ss_pred CChHHHHhHH------------------------------HHh-------------------------------------
Q 044812 255 PNKVSLVSVL------------------------------PTC------------------------------------- 267 (547)
Q Consensus 255 p~~~~~~~ll------------------------------~~~------------------------------------- 267 (547)
|...++...+ ..+
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 2222111111 000
Q ss_pred --------------------------hccCCchhHHHHHHHHHHc-C-CCCchhHHHHHHHHHHhcC-------------
Q 044812 268 --------------------------SSLIGLSGGKQIHGFAIRK-E-LNHDVSLCNALIDMYSKCG------------- 306 (547)
Q Consensus 268 --------------------------~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g------------- 306 (547)
.+.|+.++|.+++...... + -.++......++..|.+.+
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 1223344444444333321 0 0112222333444444433
Q ss_pred --------------------------------------------------CHHHHHHHHhc-CCCCCChhhHHHHHHHHH
Q 044812 307 --------------------------------------------------SLDCARRVFED-SSFNKDAITWSSIVSGYG 335 (547)
Q Consensus 307 --------------------------------------------------~~~~A~~~~~~-~~~~~~~~~~~~li~~~~ 335 (547)
+.++|...+.+ ....|+......+...+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAY 520 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33333333322 111233222222233334
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 044812 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 336 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
..|++++|...|+++... .|+...+..+...+...|+.++|...+++..+. . +.....+..+...+.+.|++++|.
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 677777777777776543 344444555666677778888888888777654 1 223333333444445569999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCcc
Q 044812 416 DFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494 (547)
Q Consensus 416 ~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 494 (547)
..+++. ...|+...|..+..++.+.|++++|+..++++++.+|+++..+..++.++...|++++|++.+++..+...
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-- 674 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-- 674 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--
Confidence 999886 56788889999999999999999999999999999999999999999999999999999999999877543
Q ss_pred CCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHH
Q 044812 495 SPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLIL 532 (547)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (547)
+....+..+ ...+...++.+++...++++.+
T Consensus 675 ~~~~a~~nL-------A~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 675 DDPALIRQL-------AYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CCHHHHHHH-------HHHHHHCCCHHHHHHHHHHHHh
Confidence 221111111 1222345566666666655443
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=2.9e-18 Score=178.22 Aligned_cols=420 Identities=9% Similarity=-0.032 Sum_probs=272.0
Q ss_pred cccccccccCCcchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-C
Q 044812 9 TFALVTSRNYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-D 85 (547)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~ 85 (547)
.+......+.++......+++..-.|+..+|.++++.+.... +.+...+..+...+.+.|++++|..+|+...+ | +
T Consensus 4 ~~~~~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~ 82 (765)
T PRK10049 4 WLRQALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN 82 (765)
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 334422345566678999999999999999999999998743 55566789999999999999999999999643 3 4
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044812 86 VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165 (547)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 165 (547)
...+..+...+...|++++|+..+++..+.. |+...+..+..++...|+.++|...++++.+.. +.+...+..+..+
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~ 159 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5677788888999999999999999998763 433337788889999999999999999999875 3456666778888
Q ss_pred HHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHH-----HHCCCH---
Q 044812 166 YVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY-----VQNGDL--- 237 (547)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~-----~~~~~~--- 237 (547)
+...|+.+.|++.++.... ++.....+ .......++... ...+++
T Consensus 160 l~~~~~~e~Al~~l~~~~~-~p~~~~~l--------------------------~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL-TPAEKRDL--------------------------EADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred HHHCCChHHHHHHHHhCCC-CHHHHHHH--------------------------HHHHHHHHHHhhcccccChhHHHHHH
Confidence 8889999999999988775 22100000 000011111111 111223
Q ss_pred HHHHHHHHHchhcCCCCCChH-HHH----hHHHHhhccCCchhHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHH
Q 044812 238 DEALVLFLEMQLKDRIEPNKV-SLV----SVLPTCSSLIGLSGGKQIHGFAIRKELN-HDVSLCNALIDMYSKCGSLDCA 311 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 311 (547)
++|+..++.+.......|+.. .+. ..+.++...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 667777776622212233221 111 1122334556667777777776665422 221 122245567777777777
Q ss_pred HHHHhcC-CCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHhc
Q 044812 312 RRVFEDS-SFNKD-----AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-----------KPD---IITIVGVLSACGR 371 (547)
Q Consensus 312 ~~~~~~~-~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~---~~~~~~l~~~~~~ 371 (547)
+..|++. ...|. ......+..++...|++++|..+++.+..... .|+ ...+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 7777653 11221 12344455566777777777777777765421 122 1234455556667
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
.|++++|++.++++... .+.+...+..+...+...|++++|++.+++. ...|+ ...+..++..+...|++++|+.+
T Consensus 372 ~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 372 SNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 77777777777777653 2335666677777777777777777777765 34454 34555566666777777777777
Q ss_pred HHHHHhhCCCCCc
Q 044812 450 YKSLIQLEPENPS 462 (547)
Q Consensus 450 ~~~~~~~~~~~~~ 462 (547)
++++++..|+++.
T Consensus 450 ~~~ll~~~Pd~~~ 462 (765)
T PRK10049 450 TDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHhCCCCHH
Confidence 7777777777663
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=4.9e-18 Score=172.74 Aligned_cols=355 Identities=11% Similarity=0.029 Sum_probs=232.9
Q ss_pred HhcCCchhHHHHhccCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHH
Q 044812 66 ALCGQPTQSQLVFNSIQH------KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139 (547)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 139 (547)
.+..+|+.---.|...++ .+......++..+.+.|++++|..+++........ +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 345566666666666553 12233445566777889999999998888876433 34455555666677899999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC
Q 044812 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR 219 (547)
Q Consensus 140 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~ 219 (547)
|...++.+.+.. +.+...+..+...+...|++++|...+++..+.+ +.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-------------------------------P~ 142 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-------------------------------SG 142 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------------CC
Confidence 999999888865 4456677888888888899999888888765422 12
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...+..++..+...|++++|...++.+ ...... +...+.. +..+...|++++|...++.+.+....++......+.
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~-~~~~P~-~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~ 219 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQ-AQEVPP-RGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAV 219 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHH-HHhCCC-CHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 4445566666666667777776666655 222111 1112222 223556666677766666665553223333444456
Q ss_pred HHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc
Q 044812 300 DMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHE----AVLLYNKMVCLGSKP-DIITIVGVLSACGRS 372 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~ 372 (547)
..+...|++++|...+++. .. +.+...+..+...+...|++++ |...|++..+. .| +...+..+...+...
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHC
Confidence 6677777777777777652 11 2345566677777777787774 67778777764 34 456777777778888
Q ss_pred CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Q 044812 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSI-WGALVSASVMHGNSEMQDLAY 450 (547)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~ 450 (547)
|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++ ...|+... +..+..++...|+.++|...|
T Consensus 298 g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 298 GQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888777541 224556667777788888888888888776 34455433 334566777888888888888
Q ss_pred HHHHhhCCCC
Q 044812 451 KSLIQLEPEN 460 (547)
Q Consensus 451 ~~~~~~~~~~ 460 (547)
+++.+..|.+
T Consensus 376 ~~al~~~P~~ 385 (656)
T PRK15174 376 EHYIQARASH 385 (656)
T ss_pred HHHHHhChhh
Confidence 8888887765
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.9e-19 Score=174.70 Aligned_cols=301 Identities=12% Similarity=0.082 Sum_probs=181.7
Q ss_pred HHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC---cchHHHHHHHHccCCCc
Q 044812 64 AYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPD---DFTLATISKLSGEIKDL 137 (547)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~ 137 (547)
.+...|++++|...|+++.+ | +..++..+...+.+.|++++|..+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34555677777777766653 2 234566666666777777777777776665422111 13455666667777777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC
Q 044812 138 NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217 (547)
Q Consensus 138 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~ 217 (547)
+.|..+|+.+.+.. +.+..+++.++.++.+.|++++|.+.++.+.+.+......
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------------- 177 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------------- 177 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-------------------------
Confidence 77777777766543 3455666777777777777777777777665432210000
Q ss_pred CCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHH
Q 044812 218 RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297 (547)
Q Consensus 218 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 297 (547)
.....|..++..+.+.|++++|...|+++ .+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.
T Consensus 178 -~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 254 (389)
T PRK11788 178 -EIAHFYCELAQQALARGDLDAARALLKKA-LAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK 254 (389)
T ss_pred -HHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH
Confidence 00112344555556666666666666665 3321 22234455555666666666666666666665432222345666
Q ss_pred HHHHHHhcCCHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cC
Q 044812 298 LIDMYSKCGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR---SG 373 (547)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g 373 (547)
++.+|.+.|++++|...++++ ...|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|
T Consensus 255 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 255 LMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCc
Confidence 777777777777777777663 23456556667777777777788888777777664 5777777766666553 44
Q ss_pred cHHHHHHHHHHHHHhcCCCCchh
Q 044812 374 LINEGLEIYNSVINTYRIKPTTE 396 (547)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~ 396 (547)
+.+++..+++++.++ ++.|++.
T Consensus 333 ~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 333 RAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred cchhHHHHHHHHHHH-HHhCCCC
Confidence 777777777777665 5555554
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=9.7e-18 Score=174.31 Aligned_cols=402 Identities=11% Similarity=0.014 Sum_probs=292.3
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 128 (547)
+.++....-.+......|+.++|+++|..... .+...+..+...+.+.|++++|.++|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 55666667777888888999999998888764 233357888888889999999999999987752 22345566777
Q ss_pred HHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHH
Q 044812 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVR 208 (547)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 208 (547)
.++...|++++|...++++++.. +.+.. +..+..++...|+.++|+..++++.+.++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P--------------------- 147 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP--------------------- 147 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------------
Confidence 78888899999999999888764 44555 77788888888999999888888765332
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh------HHHHhHHHHh-----hccCCc---h
Q 044812 209 SRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK------VSLVSVLPTC-----SSLIGL---S 274 (547)
Q Consensus 209 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~------~~~~~ll~~~-----~~~~~~---~ 274 (547)
.+...+..+..++...+..++|++.++.. .. .|+. .....++... ...+++ +
T Consensus 148 ----------~~~~~~~~la~~l~~~~~~e~Al~~l~~~-~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 148 ----------QTQQYPTEYVQALRNNRLSAPALGAIDDA-NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred ----------CCHHHHHHHHHHHHHCCChHHHHHHHHhC-CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 34555666777777888888888888776 32 3321 0111222222 122233 6
Q ss_pred hHHHHHHHHHHc-CCCCchh-HHH----HHHHHHHhcCCHHHHHHHHhcCCCCC--Chh-hHHHHHHHHHhcCChHHHHH
Q 044812 275 GGKQIHGFAIRK-ELNHDVS-LCN----ALIDMYSKCGSLDCARRVFEDSSFNK--DAI-TWSSIVSGYGLHGKGHEAVL 345 (547)
Q Consensus 275 ~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~ 345 (547)
.|...++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+-... ++. ....+...|...|++++|..
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 778888888764 2223221 111 11334567799999999999854221 111 22225778999999999999
Q ss_pred HHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcC----------CCCc---hhHHHHHHHHhHhcC
Q 044812 346 LYNKMVCLGSKP---DIITIVGVLSACGRSGLINEGLEIYNSVINTYR----------IKPT---TEICACVVDMLGRAG 409 (547)
Q Consensus 346 ~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g 409 (547)
.|+++.+..... .......+..++...|++++|.++++.+..... -.|+ ...+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 999987653211 134566677788999999999999999876421 0122 234566788899999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 410 QLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 410 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
++++|++.++++ ...| +...+..+...+...|++++|++.++++++..|+++..+..++..+.+.|++++|..+++++
T Consensus 374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999997 3344 56688999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCC
Q 044812 488 KDRG 491 (547)
Q Consensus 488 ~~~~ 491 (547)
.+..
T Consensus 454 l~~~ 457 (765)
T PRK10049 454 VARE 457 (765)
T ss_pred HHhC
Confidence 7643
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.3e-16 Score=163.09 Aligned_cols=419 Identities=8% Similarity=-0.014 Sum_probs=291.9
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhc
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKN 99 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~ 99 (547)
+......+...|+++.|...++..++. .|++..|..+..+|.+.|++++|++.++...+ | +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445667788889999999999998875 57888999999999999999999999998765 3 456888899999999
Q ss_pred CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHh
Q 044812 100 HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLF 179 (547)
Q Consensus 100 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 179 (547)
|++++|+.-|......+.. +......++..+.. ..+........+.. +++...+..+.. |...........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 9999999988776554211 11111112111111 12222222222322 222222322222 22222222222212
Q ss_pred ccCCCCCh---hhHHHHHHHH---HcCCCchhHHHHHHHHhhcC------CCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 180 DEMPQRNV---GSWNVRISGH---ASSGDFSLVVRSRRVFDQMK------RRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 180 ~~~~~~~~---~~~~~li~~~---~~~g~~~~a~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
+...+.+. ..+..+...+ ...+++++ |.+.|+... ......|+.+...+...|++++|+..|++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~---A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEE---AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHH---HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22111111 1111111111 22345556 555554443 234567888899999999999999999988
Q ss_pred hhcCCCCCC-hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-Ch
Q 044812 248 QLKDRIEPN-KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DA 324 (547)
Q Consensus 248 ~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~ 324 (547)
.. ..|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|++ +...| +.
T Consensus 358 -l~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 358 -IE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred -HH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 44 3454 5578888888999999999999999998875 55678899999999999999999999987 33344 46
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCch-h-------
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT-E------- 396 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~------- 396 (547)
..+..+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|++..+. .|+. .
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~ 509 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHH
Confidence 678888899999999999999999998752 335778889999999999999999999998754 2321 1
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM-PVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
.++.....+...|++++|.+++++. ...|+. ..+..++..+...|++++|++.|+++.++.+...
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 1222233344579999999999985 555654 4788999999999999999999999999876533
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=4.7e-16 Score=158.62 Aligned_cols=430 Identities=9% Similarity=-0.011 Sum_probs=311.6
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHH---HHHHH
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISN--PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSL---INGYV 97 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---l~~~~ 97 (547)
...-+.+..+.|++..|...++++++.. |+ +.++ .++..+...|+.++|+..+++...|+...+..+ ...+.
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 4455556777899999999999998885 44 2344 888888899999999999999987754444433 34677
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 044812 98 KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177 (547)
Q Consensus 98 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 177 (547)
..|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 779999999999999986533 4566667788889999999999999998775 4555555555555555666766999
Q ss_pred HhccCCC--C-ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC---Chh------hHHHHHHHH---H--HCCC---H
Q 044812 178 LFDEMPQ--R-NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR---NVY------AWTAMINGY---V--QNGD---L 237 (547)
Q Consensus 178 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~---~~~------~~~~li~~~---~--~~~~---~ 237 (547)
.++++.+ | +...+..+..+..+.|-... |.++...-+.- ... ....+++.- . ...+ .
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~---a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEP---ALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH---HHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999876 3 34466777788888888887 66666655421 110 011111110 0 1122 3
Q ss_pred HHHHHHHHHchhcCCCCCChH-----HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044812 238 DEALVLFLEMQLKDRIEPNKV-----SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 312 (547)
+.|+.-++.+....+..|... ...-.+-++...++..++.+.++.+...+.+....+-..+.++|...+++++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 455666666533333334322 223445678888999999999999998887766778889999999999999999
Q ss_pred HHHhcCC--------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CC--CH-HHHHHHHHHHh
Q 044812 313 RVFEDSS--------FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-----------KP--DI-ITIVGVLSACG 370 (547)
Q Consensus 313 ~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p--~~-~~~~~l~~~~~ 370 (547)
.+|++.- ..++......|.-+|...+++++|..+++++.+.-. .| |- ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9998741 012333357788899999999999999999987311 12 22 33445667788
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDL 448 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 448 (547)
..|++.+|++.++++... -+-|......+.+.+...|.+.+|+..++.. ...|+ ..+....+.++...+++.+|..
T Consensus 428 ~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 899999999999999754 2448888899999999999999999999776 44565 4577788888889999999999
Q ss_pred HHHHHHhhCCCCCch
Q 044812 449 AYKSLIQLEPENPSN 463 (547)
Q Consensus 449 ~~~~~~~~~~~~~~~ 463 (547)
+.+.+.+..|+++.+
T Consensus 506 ~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 506 LTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhCCCchhH
Confidence 999999999988744
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=9.9e-17 Score=163.26 Aligned_cols=356 Identities=10% Similarity=0.009 Sum_probs=270.8
Q ss_pred HHhcCChhHHHHHHHHhhhC--CCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 044812 96 YVKNHGHNEALELFSNMYYS--NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173 (547)
Q Consensus 96 ~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 173 (547)
+.++.+|+.---+|..-.++ .-.-+......++..+.+.|+++.|..+++..+.... -+......++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHH
Confidence 34555665554455444332 1111333455567777788888888888888777653 33445555666677788888
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCC
Q 044812 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253 (547)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 253 (547)
+|...|+++.+.+ +.+...+..+...+...|++++|+..|++. .. +
T Consensus 94 ~A~~~l~~~l~~~-------------------------------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A-l~--l 139 (656)
T PRK15174 94 AVLQVVNKLLAVN-------------------------------VCQPEDVLLVASVLLKSKQYATVADLAEQA-WL--A 139 (656)
T ss_pred HHHHHHHHHHHhC-------------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--h
Confidence 8888887765433 245667888899999999999999999998 44 3
Q ss_pred CC-ChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCC--CChhhHHH
Q 044812 254 EP-NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFN--KDAITWSS 329 (547)
Q Consensus 254 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--~~~~~~~~ 329 (547)
.| +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+ ... ++...+..
T Consensus 140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGL 217 (656)
T ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 44 4567788889999999999999999988776533 33344333 3478899999999999873 211 23344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH----HHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE----GLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++ |...|++..+.. +.+...+..+...+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l 294 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH
Confidence 6778899999999999999999864 3356778888899999999986 899999988541 33677899999999
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 406 GRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
.+.|++++|...+++. ...|+ ...+..+..++...|++++|+..++++.+.+|.++..+..++.++...|++++|.+.
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999987 44554 557888899999999999999999999999998877777788999999999999999
Q ss_pred HHHHHhCC
Q 044812 484 RTMMKDRG 491 (547)
Q Consensus 484 ~~~m~~~~ 491 (547)
+++..+..
T Consensus 375 l~~al~~~ 382 (656)
T PRK15174 375 FEHYIQAR 382 (656)
T ss_pred HHHHHHhC
Confidence 99987654
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.9e-16 Score=153.40 Aligned_cols=482 Identities=11% Similarity=0.081 Sum_probs=324.8
Q ss_pred ccccCCcccccccccCCcch-HHHHHHHHHhcc---CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHh
Q 044812 3 LSSARNTFALVTSRNYTSAT-VQHFLQVSATHR---SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVF 78 (547)
Q Consensus 3 ~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 78 (547)
.+.|.-.|.++.+-+|+... +..|..+-.... .+..+.+++...-.-. +-||.+.+.|.+-|.-.|+++.+..+.
T Consensus 215 ~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la 293 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLA 293 (1018)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHH
Confidence 44566666666666663332 222222222222 2333344444333332 456778888888888888888888887
Q ss_pred ccCCCC------CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchH--HHHHHHHccCCCcHHHHHHHHHHHHh
Q 044812 79 NSIQHK------DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL--ATISKLSGEIKDLNVGMLIHGLSIKI 150 (547)
Q Consensus 79 ~~~~~~------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~ 150 (547)
..+... -..+|-.+.+++-..|++++|...|.+..+. .||.+++ .-|.+.+.+.|+++.+...|+...+.
T Consensus 294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 776532 1345677788888888888888888777654 3454443 34677888888888888888888776
Q ss_pred CCCCchhHHHHHHHHHHhcC----ChHHHHHHhccCCCC---ChhhHHHHHHHHHcCCCchh---HHHHHHHHhh-cCCC
Q 044812 151 GFVVDVILANSLMSMYVKCG----KFSECLNLFDEMPQR---NVGSWNVRISGHASSGDFSL---VVRSRRVFDQ-MKRR 219 (547)
Q Consensus 151 g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~---a~~a~~~~~~-~~~~ 219 (547)
. +.+..+...|...|...+ ..+.|..++.+..++ |...|-.+...+-...-... ...|.+++.. +...
T Consensus 372 ~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 372 L-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQI 450 (1018)
T ss_pred C-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCC
Confidence 3 445667777777777665 456777777766654 33455444444433332211 1334433333 3345
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC---CCCCC------hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCC
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKD---RIEPN------KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH 290 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 290 (547)
.+...|.+...+...|++.+|...|+.. ... ...+| ..+-..+....-..++.+.|.+.|..+.+.. +.
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A-~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~ 528 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSA-LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PG 528 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHH-hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-ch
Confidence 7778888888899999999999988876 332 12222 2344456666777888899999998888764 22
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDSS--FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLS 367 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~ 367 (547)
-+..|-.++.+....+...+|...+++.. ...++..++.+...+.....+..|.+-|....+.- ..+|..+...|.+
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 23344444444444577788888887632 14556667777778888888888888777665542 2356666666666
Q ss_pred HHhc------------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 044812 368 ACGR------------SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP--VEPSPSIWGAL 433 (547)
Q Consensus 368 ~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 433 (547)
.|.. .+..++|+++|.++.+. -+.|...-|-+.-.++..|++.+|.++|.+.. ......+|..+
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl 686 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL 686 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence 5542 24567888888888753 24477888888889999999999999999872 22345688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLE--PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
..+|...|++..|+++|+...+.. .+++.+...|++++.+.|++.+|.+.+........
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 999999999999999999998763 56778899999999999999999999888765543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=7.7e-15 Score=149.85 Aligned_cols=422 Identities=10% Similarity=0.024 Sum_probs=304.6
Q ss_pred HHHHHhcCCchhHHHHhccCCC--CCcc-hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcc-hHHHH--HHHHccCC
Q 044812 62 ITAYALCGQPTQSQLVFNSIQH--KDVY-LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF-TLATI--SKLSGEIK 135 (547)
Q Consensus 62 ~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l--~~~~~~~~ 135 (547)
+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+.. .+..+ ...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 3345788999999999999875 4431 23388888889999999999999998 34333 33333 55788889
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhh
Q 044812 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215 (547)
Q Consensus 136 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~ 215 (547)
++++|..+++++.+.. +.+...+..++..+...++.++|++.++++...+......+..++...+ ..+..+|.+.+++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~-~~~~~~AL~~~ek 194 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRA-TDRNYDALQASSE 194 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 9999999999999876 4456777788899999999999999999998755443333555555533 2222236666655
Q ss_pred cC---CCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHH------HhHHHHh-----hccCCc---hhHHH
Q 044812 216 MK---RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL------VSVLPTC-----SSLIGL---SGGKQ 278 (547)
Q Consensus 216 ~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~------~~ll~~~-----~~~~~~---~~a~~ 278 (547)
+. +.+...+..+..++.+.|-...|+++..+- .. -+.+...-. ...++.- ....++ +.|..
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~-p~-~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN-PN-LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC-cc-ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 54 446778889999999999999999888754 21 122222111 1111111 112233 33444
Q ss_pred HHHHHHHc-CC-CCchhHH----HHHHHHHHhcCCHHHHHHHHhcCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 044812 279 IHGFAIRK-EL-NHDVSLC----NALIDMYSKCGSLDCARRVFEDSSFNK---DAITWSSIVSGYGLHGKGHEAVLLYNK 349 (547)
Q Consensus 279 ~~~~~~~~-~~-~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ 349 (547)
-++.+... +. ++....| .-.+-++...|+..++++.|+.+.... ...+-..+..+|...+++++|..+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444431 11 2222222 234556778899999999999876222 234567788999999999999999999
Q ss_pred HHHcC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC----------CCc---hhHHHHHHHHhHhcCCH
Q 044812 350 MVCLG-----SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI----------KPT---TEICACVVDMLGRAGQL 411 (547)
Q Consensus 350 m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~g~~ 411 (547)
+.... ..++......|.-++...+++++|..+++.+.+.... .|+ ...+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 87653 1224444678899999999999999999999763110 122 23345567888999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+|++.++++ ...| |......+...+...|.+.+|++.++.+...+|++..+...++.++...|+|++|..+.+...+
T Consensus 433 ~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 433 PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999998 3344 7788999999999999999999999999999999999999999999999999999999877755
Q ss_pred CC
Q 044812 490 RG 491 (547)
Q Consensus 490 ~~ 491 (547)
..
T Consensus 513 ~~ 514 (822)
T PRK14574 513 RS 514 (822)
T ss_pred hC
Confidence 43
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.1e-15 Score=146.37 Aligned_cols=482 Identities=11% Similarity=0.045 Sum_probs=231.5
Q ss_pred cccCCcccccccccC-CcchHHHHHHHHHhccCchHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCchhHHHHhcc
Q 044812 4 SSARNTFALVTSRNY-TSATVQHFLQVSATHRSLKLTKQSHSQILSLG--HISNPFVSTKLITAYALCGQPTQSQLVFNS 80 (547)
Q Consensus 4 ~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 80 (547)
++|...|..+.+..| ..+.+.--+.+....+++..|..+|...+... ..||+.. -+...+.+.|+.+.|+..|..
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHH
Confidence 345555666655444 33344555556666678888888888755543 3444432 233455667777777777776
Q ss_pred CCCCCcchHHHHHHHH---Hhc---CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCC
Q 044812 81 IQHKDVYLYNSLINGY---VKN---HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV 154 (547)
Q Consensus 81 ~~~~~~~~~~~ll~~~---~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~ 154 (547)
..+-|+..-++++... ... ..+..++.++...-..+. -|+...+.|...+.-.|+++.+.++...+.......
T Consensus 225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 6554333333222111 111 223344444444333221 244455555555555566666655555555443111
Q ss_pred --chhHHHHHHHHHHhcCChHHHHHHhccCCC--CC--hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHH
Q 044812 155 --DVILANSLMSMYVKCGKFSECLNLFDEMPQ--RN--VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMI 228 (547)
Q Consensus 155 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li 228 (547)
-...|-.+.++|...|++++|...|.+..+ +| +..+--+.+.+.+.|+++.+....+-+-...+.+..+...|.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 122344455566666666666655554443 11 123334445555555555533332222222233444444444
Q ss_pred HHHHHCC----CHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHH----HHcCCCCchhHHHHHHH
Q 044812 229 NGYVQNG----DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFA----IRKELNHDVSLCNALID 300 (547)
Q Consensus 229 ~~~~~~~----~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~ 300 (547)
..|...+ ..+.|..++.+. .+. .+.|...|..+...+....-+ ....++..+ ...+..+.+...|.+..
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~-~~~-~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKV-LEQ-TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHH-Hhc-ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 4444443 334444444443 111 122333343333333322222 113333222 23333344455555555
Q ss_pred HHHhcCCHHHHHHHHhcC-C-----CCCCh------hhHHHHHHHHHhcC------------------------------
Q 044812 301 MYSKCGSLDCARRVFEDS-S-----FNKDA------ITWSSIVSGYGLHG------------------------------ 338 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~-----~~~~~------~~~~~li~~~~~~~------------------------------ 338 (547)
.+...|++++|...|.+. + ..++. .+-..+...+-..+
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHH
Confidence 555555555555555421 0 01111 11112222333333
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH--------
Q 044812 339 ----KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG-------- 406 (547)
Q Consensus 339 ----~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 406 (547)
...+|..+++...... ..++.....+...+.....+..|.+-|....+.....+|+...-.|.+.|.
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 4444555554444321 122233333333444444555555544444333222234333333333332
Q ss_pred ----hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHH
Q 044812 407 ----RAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480 (547)
Q Consensus 407 ----~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 480 (547)
..+..++|+++|.+. ...| |...-+.++-.++..|++..|..+|.++.+-..+.+.+|..++.+|..+|+|-.|
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHH
Confidence 123456666676654 3333 5556666677777777777777777777776555666777788888888888888
Q ss_pred HHHHHHHHhCCC
Q 044812 481 AELRTMMKDRGL 492 (547)
Q Consensus 481 ~~~~~~m~~~~~ 492 (547)
+++|+...+.-.
T Consensus 700 IqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 700 IQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHHhc
Confidence 887776654433
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=4.1e-14 Score=126.15 Aligned_cols=411 Identities=13% Similarity=0.106 Sum_probs=239.3
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--CCchhH-HHHhccCC-----------------
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALC--GQPTQS-QLVFNSIQ----------------- 82 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--~~~~~A-~~~~~~~~----------------- 82 (547)
-+.++. +-..|.+.++.-+++.|.+.|++.++.+-..|++.-+-. .++.=| ++.|-.|.
T Consensus 119 E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 119 ENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred hhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 344444 345689999999999999999999988877777754432 222211 12222221
Q ss_pred ------CCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCch
Q 044812 83 ------HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV 156 (547)
Q Consensus 83 ------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 156 (547)
.....+|..+|.++++--..++|.++|++-.....+.+..+||.+|.+..-..+ ++++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 134578999999999999999999999999988888999999999987654433 8899999999999999
Q ss_pred hHHHHHHHHHHhcCChHHHH----HHhccCCC----CChhhHHHHHHHHHcCCCchhHHH--HHHHHhhcC--------C
Q 044812 157 ILANSLMSMYVKCGKFSECL----NLFDEMPQ----RNVGSWNVRISGHASSGDFSLVVR--SRRVFDQMK--------R 218 (547)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~----~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~--a~~~~~~~~--------~ 218 (547)
.|+|+++.+..+.|+++.|. +++.+|++ |...+|..+|..+++.++..++.. ..++...+. .
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 99999999999999887654 45566654 566677777777777777644211 112222221 1
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC---C-CCCCh---HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCc
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD---R-IEPNK---VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD 291 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~-~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 291 (547)
.|...|...+..|....+.+.|.++-.-. +.. . +.|+. .-|..+....++....+.....|+.|+..-+-|+
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll-~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLL-KTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHH-HcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 23444555555555666666555554433 111 0 11221 1233344444445555555555555554444445
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII---TIVGVLSA 368 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~ 368 (547)
..+...++++..-.|.++-.-+++.++. .|...-+-+--.+++..|......|+.. -+.....-
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~-------------~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSK-------------EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAK 499 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHH-------------HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 4454445554444444444444443322 0000111112223333333333333222 12222111
Q ss_pred HhccCcHHHHHH-HHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHc
Q 044812 369 CGRSGLINEGLE-IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-------PVEPSPSIWGALVSASVMH 440 (547)
Q Consensus 369 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~ 440 (547)
|+. ++.++.+ .-.++. .........+.+.-.+.+.|+.++|.+++... +..|......-++....+.
T Consensus 500 ~aa--d~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 500 CAA--DIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHH--HHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 110 1111111 111222 22334556666777778888888888877654 2334444455666777777
Q ss_pred CCHHHHHHHHHHHHhhC
Q 044812 441 GNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~ 457 (547)
+++..|..+++-+...+
T Consensus 575 ~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFN 591 (625)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 78888888888776655
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=5.3e-15 Score=132.66 Aligned_cols=446 Identities=13% Similarity=0.083 Sum_probs=305.5
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCCchhHHHHhccCCC--CC------cchHHHHH
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVS-TKLITAYALCGQPTQSQLVFNSIQH--KD------VYLYNSLI 93 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~ll 93 (547)
+..+++-+.......+|...++-+++...-|+.... -.+.+.+.+.+++.+|++.|+.... |+ +...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 566677777778888899999999988888876543 3455677888899999998876543 32 23445555
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCc------------hhHHHH
Q 044812 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD------------VILANS 161 (547)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~------------~~~~~~ 161 (547)
-.+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.....+| ....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5678899999999999988764 47776655566666778899999999999886533222 222222
Q ss_pred -----HHHHHHhcCC--hHHHHH----HhccCCCCChh-------------hHHH--------HHHHHHcCCCchhHHHH
Q 044812 162 -----LMSMYVKCGK--FSECLN----LFDEMPQRNVG-------------SWNV--------RISGHASSGDFSLVVRS 209 (547)
Q Consensus 162 -----l~~~~~~~g~--~~~A~~----~~~~~~~~~~~-------------~~~~--------li~~~~~~g~~~~a~~a 209 (547)
.++-+-+..+ .++++- +..-...++.. .+.. -...+.++|+++.|.+.
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 2222222221 122221 22222222211 0100 11246788888887777
Q ss_pred HHHHhhcCCCChh-hHHHHHH-HHHH-CCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHc
Q 044812 210 RRVFDQMKRRNVY-AWTAMIN-GYVQ-NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286 (547)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~li~-~~~~-~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 286 (547)
+++|+.-...... .-+.|-. -|.+ -.++..|.++-+.. .. .-.-+......-.......|++++|...+.+....
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a-ln-~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA-LN-IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH-hc-ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 7777665433221 1222221 2222 34566666665554 11 11223333333344556789999999999998876
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044812 287 ELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS--FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG 364 (547)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 364 (547)
.-.-....|| +.-.+...|++++|++.|-++. +..+......+...|-...+..+|.+++.+.... ++.|+....-
T Consensus 520 dasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 520 DASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred chHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 5333333444 4445778899999999997642 1345566677788898899999999999877664 4557888999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCC
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSAS-VMHGN 442 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~~~ 442 (547)
|...|-+.|+-.+|.+.+-.--+ -++.+.++..-|..-|....-+++|..+|++. -++|+..-|..++..| .+.|+
T Consensus 598 l~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 99999999999999887664432 34558899998999999999999999999997 5789999999888655 57899
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
+.+|.++|+...+.-|.+......|++.+...|.
T Consensus 676 yqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999999888775
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.9e-13 Score=121.94 Aligned_cols=351 Identities=9% Similarity=0.095 Sum_probs=249.1
Q ss_pred CCCChhHHHHHHHHHHhcCCchhHHHHhccCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHH
Q 044812 51 HISNPFVSTKLITAYALCGQPTQSQLVFNSIQH----KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126 (547)
Q Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 126 (547)
.+-++.++..+|.++|+-...+.|.+++++... -+..++|.+|.+-. +..-.+++.+|....++||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHH
Confidence 466889999999999999999999999998765 35667777776543 3334889999999999999999999
Q ss_pred HHHHHccCCCcHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH-HHHHhccCCC------------CChhh
Q 044812 127 ISKLSGEIKDLNV----GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE-CLNLFDEMPQ------------RNVGS 189 (547)
Q Consensus 127 l~~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~------------~~~~~ 189 (547)
++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. .|..-
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998874 56788999999999999999999999999888744 4444444321 13345
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHhhcCC-----C---ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHH
Q 044812 190 WNVRISGHASSGDFSLVVRSRRVFDQMKR-----R---NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261 (547)
Q Consensus 190 ~~~li~~~~~~g~~~~a~~a~~~~~~~~~-----~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~ 261 (547)
+..-+..|.+..+.+.|.+...+++.-.. + ...-|..+....++....+.-+.+|+.| .-.-+-|+..+..
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l-VP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL-VPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccceecCCchhHH
Confidence 66667778888888887777777766542 2 2234667778888999999999999999 6777889999999
Q ss_pred hHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHh--cCC
Q 044812 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGL--HGK 339 (547)
Q Consensus 262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~--~~~ 339 (547)
.++++....+.++-.-+++..++..|.........-++..+++ ....|+...-..+-....+ ..-
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~-------------~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR-------------DKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc-------------CCCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754443333333333332 2223332222222111111 111
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHH---HHHHHhHhcCCHHHHHH
Q 044812 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA---CVVDMLGRAGQLDRALD 416 (547)
Q Consensus 340 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~ 416 (547)
.+.....-.+|.+..+.| ...+.+...+.+.|..++|.+++..+.+.+.-.|.....| -+++.-.+.++...|..
T Consensus 505 ~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 222233344555554444 4445555567888888888888888865544444444444 55666677788888888
Q ss_pred HHHhC
Q 044812 417 FIKTM 421 (547)
Q Consensus 417 ~~~~~ 421 (547)
.++-|
T Consensus 583 ~lQ~a 587 (625)
T KOG4422|consen 583 VLQLA 587 (625)
T ss_pred HHHHH
Confidence 88776
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=5.8e-13 Score=119.79 Aligned_cols=434 Identities=12% Similarity=0.083 Sum_probs=288.8
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHhccCCC----CCcc-hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcc----hHH
Q 044812 55 PFVSTKLITAYALCGQPTQSQLVFNSIQH----KDVY-LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF----TLA 125 (547)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~ 125 (547)
-.+...|.+-|.......+|+..|+.+.+ |+.- .--.+...+.+.+++.+|++.|.-.+..-...+.. ..+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 44555667778888889999999988764 3322 11223456678889999999998877642222222 344
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC----------------CChhh
Q 044812 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ----------------RNVGS 189 (547)
Q Consensus 126 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~ 189 (547)
.+...+.+.|.++.|...|+...+. .|+..+--.|+-++..-|+-++..+.|.+|.. |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 4555678999999999999998875 57777766677788888999999999988753 11111
Q ss_pred HHH-----HHHHHHcCCCchhHHHHHHHHhhcC----CCChh-------------hHH--------HHHHHHHHCCCHHH
Q 044812 190 WNV-----RISGHASSGDFSLVVRSRRVFDQMK----RRNVY-------------AWT--------AMINGYVQNGDLDE 239 (547)
Q Consensus 190 ~~~-----li~~~~~~g~~~~a~~a~~~~~~~~----~~~~~-------------~~~--------~li~~~~~~~~~~~ 239 (547)
.+. .+.-+-+... ..|+.+.-.--++. .|+-. .|. .-...|.+.|+++.
T Consensus 359 l~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 111 1222222221 11222222222221 22110 111 12345789999999
Q ss_pred HHHHHHHchhcCCCCCChHHHH--hHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044812 240 ALVLFLEMQLKDRIEPNKVSLV--SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317 (547)
Q Consensus 240 A~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (547)
|+++++-. .+...+.-...-+ +.+.-+....++..|.++-+..+... ..+......-.+.....|++++|.+.|++
T Consensus 438 aieilkv~-~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVF-EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHH-HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999888 4433332222222 22333333456777777777665443 23333333334445567999999999988
Q ss_pred CCCCCChhhHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc
Q 044812 318 SSFNKDAITWSSI---VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394 (547)
Q Consensus 318 ~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 394 (547)
.- ..|..+...| .-.+-..|+.++|++.|-++..- +..+......+.+.|....+..+|++++.+... -++.|
T Consensus 516 al-~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~d 591 (840)
T KOG2003|consen 516 AL-NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPND 591 (840)
T ss_pred HH-cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCC
Confidence 54 3444433333 33467789999999999888664 344677788888889999999999999887752 34558
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
+.+...|.+.|-+.|+-.+|.+..-+. . +.-+..+..-|...|....-.++++..|+++.-+.|.........+.++.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 899999999999999999999886554 3 34577788888888999999999999999998888865444444556677
Q ss_pred cCCCHHHHHHHHHHHHhCCCccCCcc
Q 044812 473 SSRRWDAVAELRTMMKDRGLKKSPGC 498 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~~~~~~ 498 (547)
+.|+++.|.++++...++ ++.+..|
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldc 696 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDC 696 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHH
Confidence 899999999999998754 3344444
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=4.4e-16 Score=142.97 Aligned_cols=257 Identities=18% Similarity=0.180 Sum_probs=113.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh-HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044812 226 AMINGYVQNGDLDEALVLFLEMQLKDRIEPNK-VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304 (547)
Q Consensus 226 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 304 (547)
.+...+.+.|++++|+++++.. .....+|+. ..|..+...+...++++.|...++.+...+. .+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~-~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKA-AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cc
Confidence 4578888999999999999654 233223444 4444555667778999999999999988763 356677777777 78
Q ss_pred cCCHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044812 305 CGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDIITIVGVLSACGRSGLINEGLEIY 382 (547)
Q Consensus 305 ~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 382 (547)
.+++++|.+++++. ...++...+..++..+.+.++++++..+++...... .+++...|..+...+.+.|+.++|++.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998763 224566777888899999999999999999987543 3456778888889999999999999999
Q ss_pred HHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 383 NSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTMP--VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 383 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
++..+. .| +......++..+...|+.+++.++++... ...|+..|..+..++...|+.++|+..++++.+.+|.
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999875 45 57888899999999999999888877661 2345567889999999999999999999999999999
Q ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 460 NPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
|+.....++.++...|+.++|.++..+..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988754
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=8.7e-11 Score=110.78 Aligned_cols=451 Identities=11% Similarity=0.067 Sum_probs=260.2
Q ss_pred cCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHH
Q 044812 34 RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFS 110 (547)
Q Consensus 34 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~ 110 (547)
....+|.-++...++. ++.+...| -+|++..-++.|..++++..+ .+...|-+-...--.+|+.+...+++.
T Consensus 390 E~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred cChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3444455555555554 22233333 334444555666666655543 244445444444445566665555554
Q ss_pred H----hhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCC----------------------------------
Q 044812 111 N----MYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF---------------------------------- 152 (547)
Q Consensus 111 ~----m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---------------------------------- 152 (547)
+ +...|+..+...|..=...|-..|..-.+..+....+..|+
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 4 23345555555444444444444444444444444444443
Q ss_pred --CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhhHHHHHHHHHcCCCchhHHHHHHHHhhc---CCCChhhH
Q 044812 153 --VVDVILANSLMSMYVKCGKFSECLNLFDEMPQ---RNVGSWNVRISGHASSGDFSLVVRSRRVFDQM---KRRNVYAW 224 (547)
Q Consensus 153 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~---~~~~~~~~ 224 (547)
+.+...|......--..|..++-..+|++... .....|-.....+...|+... |+.++... ...+...|
T Consensus 545 vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~---ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 545 VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPA---ARVILDQAFEANPNSEEIW 621 (913)
T ss_pred hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHH---HHHHHHHHHHhCCCcHHHH
Confidence 22333344333333334444444444444432 122234444444455555555 33333322 22345556
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044812 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK 304 (547)
Q Consensus 225 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 304 (547)
-.-+.....+.+++.|..+|.+. .. ..|+...|.--+..---.++.++|.+++++..+.- +.-...|..+...+-+
T Consensus 622 laavKle~en~e~eraR~llaka-r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKA-RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHH-hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHH
Confidence 66666666666666666666655 22 45555555555555555566666666666655542 3334455666666666
Q ss_pred cCCHHHHHHHHhc-CCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044812 305 CGSLDCARRVFED-SSFNKDA-ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382 (547)
Q Consensus 305 ~g~~~~A~~~~~~-~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 382 (547)
.++++.|...|.. ....|+. ..|-.|...--+.|++-+|..++++..-.+ +-+...|...|+.-.+.|+.+.|..+.
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666654 2223433 345555555556666667777776666553 224556666666666777777777766
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
.+..+. .+.+...|..-|....+.++-....+.+++.. .|+.+...+...+....++++|.+.|.++++.+|++..
T Consensus 777 akALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 777 AKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 666653 24455666666666666666666666666653 45666677778888889999999999999999999999
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEee
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISI 503 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 503 (547)
+|..+...+.+.|.-++-.+++++..... |.-+-.|..+
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 99999999999999999999999876543 4445556544
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=1.3e-12 Score=127.48 Aligned_cols=319 Identities=11% Similarity=0.104 Sum_probs=225.7
Q ss_pred HHhcCChHHHHHHhccCCCC---ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHH
Q 044812 166 YVKCGKFSECLNLFDEMPQR---NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242 (547)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 242 (547)
....|++++|.+++.++.+. +...|..|..+|-..|+.+++....-+.-.+.+.|...|-.+.....+.|++++|.-
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 33347777777777766542 344677777777777777775555555555666677888888888888888888888
Q ss_pred HHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCCHHHHHHHHhcC
Q 044812 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLC----NALIDMYSKCGSLDCARRVFEDS 318 (547)
Q Consensus 243 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 318 (547)
+|.+. .+. -+++...+.--...|-+.|+...|...+.++.....+.+..-+ ...++.+...++-+.|.+.++..
T Consensus 229 cy~rA-I~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRA-IQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHH-Hhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88887 332 3445555555667778888888888888888876543333222 33455666677778888877652
Q ss_pred C----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---------------------------CCCCCHHHHHHHHH
Q 044812 319 S----FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL---------------------------GSKPDIITIVGVLS 367 (547)
Q Consensus 319 ~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------g~~p~~~~~~~l~~ 367 (547)
- -.-+...++.++..|.+...++.|......+... ++.++...+ -+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 1 1234455778888888888888888887777652 122232331 1222
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHhHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCC
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRI--KPTTEICACVVDMLGRAGQLDRALDFIKTMP---VEPSPSIWGALVSASVMHGN 442 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~ 442 (547)
++......+....+....... .+ .-+...|.-+.++|...|++.+|+.+|..+. ...+...|-.+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 333333333333333333333 43 3367889999999999999999999999983 22357799999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
++.|.+.|++++...|++..+-..|...+.+.|+.++|.++++.|.
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999876
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1e-12 Score=119.44 Aligned_cols=381 Identities=15% Similarity=0.126 Sum_probs=255.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-cchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHH
Q 044812 90 NSLINGYVKNHGHNEALELFSNMYYSNVSPD-DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD-VILANSLMSMYV 167 (547)
Q Consensus 90 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~ 167 (547)
-....-|-++|++++|++.|.+.++. .|| +..|.....+|...|+|+.+.+--...++. .|+ ...+..-.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34455677889999999999999874 578 777888999999999999998888777765 344 345566667888
Q ss_pred hcCChHHHHHH------hccCCCCChhhHHHHHH-HHHcCCCchhHHHHHHHHhhcCC---CCh----------------
Q 044812 168 KCGKFSECLNL------FDEMPQRNVGSWNVRIS-GHASSGDFSLVVRSRRVFDQMKR---RNV---------------- 221 (547)
Q Consensus 168 ~~g~~~~A~~~------~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~a~~~~~~~~~---~~~---------------- 221 (547)
..|++++|+.- ++......+. .++. .+-+.|. ..+.+.+..-.. |+.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~---~~~eR~Lkk~a~----~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIE---PMAERVLKKQAM----KKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhH---HHHHHHHHHHHH----HHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 88888887642 2222211111 1111 0000000 012222221011 111
Q ss_pred -------hhHHHHHHHHHH--CC---CHHHHHHHHHHchhcCCCCCC-----------hHHHHhHHHHhhccCCchhHHH
Q 044812 222 -------YAWTAMINGYVQ--NG---DLDEALVLFLEMQLKDRIEPN-----------KVSLVSVLPTCSSLIGLSGGKQ 278 (547)
Q Consensus 222 -------~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~~~~~p~-----------~~~~~~ll~~~~~~~~~~~a~~ 278 (547)
.++..+..++.. .+ .+.+|...+.+-....-..++ ..+......-+.-.|+.-.+..
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 112222222211 11 334444443322011111111 1112222222344678888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044812 279 IHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355 (547)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 355 (547)
-|+..++....+ ...|--+..+|....+.++....|++ +. +-|+.+|..-.+.+.-.+++++|..=|++.+..
T Consensus 348 d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-- 423 (606)
T KOG0547|consen 348 DFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-- 423 (606)
T ss_pred hHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 898888876333 33477778889999999999999986 44 456778888888888889999999999999884
Q ss_pred CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-------
Q 044812 356 KP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS------- 426 (547)
Q Consensus 356 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------- 426 (547)
.| +...|..+.-+..+.++++++...|++..++ ++-.++.|+.....+...+++++|.+.|+.. ...|+
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 55 4567777777778899999999999999875 4667899999999999999999999999976 33343
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 427 --PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 427 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
+.+--.++..-. .+++..|+++++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus 502 ~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 502 AAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred chhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222222222223 3899999999999999999999999999999999999999999999753
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.8e-12 Score=115.00 Aligned_cols=329 Identities=14% Similarity=0.114 Sum_probs=241.7
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChh-hHHHHHH
Q 044812 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY-AWTAMIN 229 (547)
Q Consensus 151 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~-~~~~li~ 229 (547)
+...|...+-.....+.+.|..+.|+..|......-+..|...+...--..+.+. +..+....+..+.. .=-.+..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~---~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI---LSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH---HHHHHhcCcccchHHHHHHHHH
Confidence 4455666555556667788999999999988776555555555444333333222 11111112111111 1112445
Q ss_pred HHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCC
Q 044812 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN--HDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 230 ~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 307 (547)
++....+.++++.-.... ...|++.+...-+....+.....++++|+.+|+++.+...- .|..+|..++-.-.....
T Consensus 236 a~~el~q~~e~~~k~e~l-~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERL-SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHH-HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 666677888888888887 77777777776677777778889999999999999987421 256677776644333222
Q ss_pred H-HHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 044812 308 L-DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSV 385 (547)
Q Consensus 308 ~-~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 385 (547)
+ --|..+++--... +.|..++..-|.-.++.++|..+|++..+. .|. ...++.+.+-|....+...|.+-++.+
T Consensus 315 Ls~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2 2344444333333 345566777788889999999999999985 454 567888888899999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 386 INTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
++- .+.|-..|-.|.++|.-.+...-|+-+|++. ..+| |...|..|+.+|.+.++.++|++.|.++...+-.+..+
T Consensus 391 vdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 853 1348899999999999999999999999998 5666 67799999999999999999999999999998778889
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 464 YVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
+..|+.+|.+.++.++|...+++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999887754
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=1.9e-10 Score=112.67 Aligned_cols=178 Identities=12% Similarity=0.061 Sum_probs=121.8
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccC---CCCCcchHHHHHHHHHhcCChh
Q 044812 27 LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSI---QHKDVYLYNSLINGYVKNHGHN 103 (547)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~ 103 (547)
+..+...|+..+|..++.++.+.. +.++..|-+|...|-..|+.+++...+-.. ...|...|-.+.....+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 334555599999999999999886 667888999999999999999988876443 2345577888888888888888
Q ss_pred HHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhcCChHHHHHHh
Q 044812 104 EALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN----SLMSMYVKCGKFSECLNLF 179 (547)
Q Consensus 104 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~~~A~~~~ 179 (547)
.|.-.|.+.++... ++...+---...|-+.|+...|...|.++.....+.|..-+. ..++.|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888888887642 243344445567777888888888888887765333332222 2344556666667777766
Q ss_pred ccCCC--C---ChhhHHHHHHHHHcCCCchhH
Q 044812 180 DEMPQ--R---NVGSWNVRISGHASSGDFSLV 206 (547)
Q Consensus 180 ~~~~~--~---~~~~~~~li~~~~~~g~~~~a 206 (547)
+.... . +...++.++..+.+...++.+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~ 335 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKA 335 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHh
Confidence 65543 1 233556666666666655554
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.1e-10 Score=104.26 Aligned_cols=476 Identities=10% Similarity=0.075 Sum_probs=330.2
Q ss_pred ccCCcccccccccCCcch-HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCC-
Q 044812 5 SARNTFALVTSRNYTSAT-VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ- 82 (547)
Q Consensus 5 ~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 82 (547)
-|++.|++.+.-+....+ -..++..=.++..+..|+.+|+..+..-...|. .|-..+-.=-..|++..|.++|+...
T Consensus 91 RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~ 169 (677)
T KOG1915|consen 91 RARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWME 169 (677)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHc
Confidence 366777777776655554 466777777888899999999988877433333 33333444445699999999998875
Q ss_pred -CCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHh-CC-CCchhHH
Q 044812 83 -HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI-GF-VVDVILA 159 (547)
Q Consensus 83 -~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~ 159 (547)
+|+..+|++.|..-.+-+.++.|..+|+...- +.|+..+|.--.+.=.+.|+...+.++++..++. |- ..+...+
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf 247 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF 247 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 49999999999999999999999999999875 4589999988888888999999999999987764 21 1123344
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC----C-ChhhHHHHHHHHHcCCCchhHHHHHHHHhh-----cCC---CChhhHHH
Q 044812 160 NSLMSMYVKCGKFSECLNLFDEMPQ----R-NVGSWNVRISGHASSGDFSLVVRSRRVFDQ-----MKR---RNVYAWTA 226 (547)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~a~~a~~~~~~-----~~~---~~~~~~~~ 226 (547)
.+....-.++..++.|.-+|+-..+ . ....|..+..---+-|+....+++.--=.+ +.. -|-.+|-.
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd 327 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHH
Confidence 4444444566778888887765443 1 122344444444445555443333322222 222 25567777
Q ss_pred HHHHHHHCCCHHHHHHHHHHchhcCCCCCChH-------HHHhHHHHh---hccCCchhHHHHHHHHHHcCCCCchhHHH
Q 044812 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKV-------SLVSVLPTC---SSLIGLSGGKQIHGFAIRKELNHDVSLCN 296 (547)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 296 (547)
.+..-...|+.+...++|++. -.+++|-.. .|.-+=-+| ....+.+.+.++++...+ -++....|+.
T Consensus 328 ylrL~e~~g~~~~Ire~yErA--Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFa 404 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERA--IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFA 404 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHH--HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHH
Confidence 777778889999999999998 344666321 222222222 357788999999999888 3466666666
Q ss_pred HHHHH----HHhcCCHHHHHHHHhc-CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 297 ALIDM----YSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 297 ~l~~~----~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
.+=-+ ..++.++..|.+++-. +|..|-..+|...|..-.+.++++.+..++++.++.+ +-|..++......-..
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHH
Confidence 54333 3467899999999965 7878999999999999999999999999999999964 2367788877777788
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC----
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASV-----MHG---- 441 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~~---- 441 (547)
.|+.+.|..+|+-.+...........|.+.|+.-...|.++.|..+++++ ...+...+|-++..--. +.+
T Consensus 484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~ 563 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLA 563 (677)
T ss_pred hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchh
Confidence 89999999999999876444445667777777778899999999999987 33455557766655333 333
Q ss_pred -------CHHHHHHHHHHHHhhC--CCCCch----HHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 442 -------NSEMQDLAYKSLIQLE--PENPSN----YVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 442 -------~~~~a~~~~~~~~~~~--~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
....|..+|+++...- ..+..- .....+.-...|...+...+-+.|
T Consensus 564 ~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 564 ELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 5678899999887642 111222 223333334456555555555555
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.2e-10 Score=106.48 Aligned_cols=442 Identities=12% Similarity=0.038 Sum_probs=293.7
Q ss_pred cCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhcc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 044812 34 RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNS--IQHKDVYLYNSLINGYVKNHGHNEALELFSN 111 (547)
Q Consensus 34 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 111 (547)
.++..|.-+-+.+-..+ .||..---+.+++.-.|++.+|..+... +.+.|..+......++.+..+|++|..++..
T Consensus 30 ~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 30 HRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGR 107 (611)
T ss_pred HhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666666665555 4555555567778888888888877754 4457888888888899999999999999882
Q ss_pred ----hhhC---------CCCCCcch----HHHH-------HHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044812 112 ----MYYS---------NVSPDDFT----LATI-------SKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167 (547)
Q Consensus 112 ----m~~~---------~~~p~~~~----~~~l-------~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 167 (547)
+..- -+.+|..- -+.- ...|....++++|...+.+.+.. |...+..+...-.
T Consensus 108 ~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs 183 (611)
T KOG1173|consen 108 GHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVS 183 (611)
T ss_pred cchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHH
Confidence 2110 01111111 1111 12334455677777777766544 3333333222111
Q ss_pred hc-CChHHHHHHhccCC-----CCChhhHHHHHHHH-HcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHH
Q 044812 168 KC-GKFSECLNLFDEMP-----QRNVGSWNVRISGH-ASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEA 240 (547)
Q Consensus 168 ~~-g~~~~A~~~~~~~~-----~~~~~~~~~li~~~-~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 240 (547)
.. --.++-..+|+... ..+......+.... ++..+.+.-....+.-..-...+.........-+...+++.+.
T Consensus 184 ~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c 263 (611)
T KOG1173|consen 184 AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKEC 263 (611)
T ss_pred HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHH
Confidence 10 01112233333211 11111111111111 0111100000000000000023555666677888899999999
Q ss_pred HHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 044812 241 LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS- 319 (547)
Q Consensus 241 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 319 (547)
.++.+...... ++....+..-|.++...|+...-..+-..+++.- |....+|-++.-.|.-.|+..+|.+.|.+..
T Consensus 264 ~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 264 LKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred HHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 99999984554 4444455556668888888887777777777764 6677889999999999999999999998732
Q ss_pred CCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhH
Q 044812 320 FNKD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEI 397 (547)
Q Consensus 320 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 397 (547)
+.|. ...|-.+..+|+-.|..++|+..+...-+. ++-....+-.+..-|.+.++.+.|.++|.+.. ++-| |+..
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv 416 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLV 416 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchh
Confidence 2333 457999999999999999999999887664 11122334445556888999999999999887 5555 7788
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTMP--------VEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
.+-+.-.....+.+.+|..+|+..- ..+ -.++++.|+.+|.+.+.+++|+..+++++.+.|.++.++..++
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 8888777788899999999998651 112 4567999999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHH
Q 044812 469 NLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m~ 488 (547)
-+|.-.|+++.|++.|++..
T Consensus 497 ~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999854
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=1.2e-09 Score=103.41 Aligned_cols=436 Identities=11% Similarity=0.082 Sum_probs=306.9
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 044812 40 KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116 (547)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 116 (547)
.+|++..+++ ++.++..|-. .....+.++|+.++....+ | +...| -++++..-++.|..+++...+.
T Consensus 366 ~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-
Confidence 5666666666 2333444433 3334566668877777655 2 33333 4566777889999999999875
Q ss_pred CCCCcchHHHHHHHHccCCCcHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC------CC
Q 044812 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLS----IKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ------RN 186 (547)
Q Consensus 117 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~ 186 (547)
++-+...|.+....=...|+.+...++.... ...|+..+..-|-.=...+-+.|..-.+..+...... .-
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 6668888888888888889988888887654 4457777777777777777777777777666665543 12
Q ss_pred hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHH
Q 044812 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPT 266 (547)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~ 266 (547)
..+|..-...|.+.+-++-+...+...-+.-..+...|...+..--..|..++...+|++. ... ++-....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqka-v~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA-VEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH-HHh-CCcchhHHHHHHHH
Confidence 3367777777777777777433333333333456667777776666778888888888877 332 34445556666666
Q ss_pred hhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhhHHHHHHHHHhcCChHHHHH
Q 044812 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVL 345 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~ 345 (547)
.-..|+...|..++..+.+.. +.+..+|-.-+.......++++|..+|.+ ....|+...|.--+...-..++.++|.+
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 777888888888888888876 44777888888888888889999888876 2335666666666666666788888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--C
Q 044812 346 LYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--P 422 (547)
Q Consensus 346 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 422 (547)
++++.++. -|+ ...|..+.+.+.+.++++.|.+.|..-.+ ..+-.+..|-.|...-.+.|++-.|..++++. .
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 88888775 455 45677777778888888888888776553 22335667777778778888888888888877 3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------------------------CchHHHHHHHHH
Q 044812 423 VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------------------------------PSNYVSLSNLYA 472 (547)
Q Consensus 423 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~ 472 (547)
...+...|...++.-.+.|+.+.|..++.++++.-|.+ +......+..+.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 33467788888888888898888888888877765543 445566667777
Q ss_pred cCCCHHHHHHHHHHHHhCCC
Q 044812 473 SSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~ 492 (547)
...+++.|.+.|.+....+.
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHHHHHHccCC
Confidence 77788888888887766553
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=5.5e-12 Score=121.26 Aligned_cols=288 Identities=9% Similarity=0.015 Sum_probs=193.0
Q ss_pred cCChhHHHHHHHHhhhCCCCCCcch-HHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHH--HHHHHHHhcCChHHH
Q 044812 99 NHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILAN--SLMSMYVKCGKFSEC 175 (547)
Q Consensus 99 ~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~A 175 (547)
.|+++.|.+.+....+.. +++.. |.....+....|+++.+..++.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577777777766655432 12222 222344446777777777777777653 33432222 335567777777777
Q ss_pred HHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC
Q 044812 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255 (547)
Q Consensus 176 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p 255 (547)
...++++.+.+ +.+...+..+...|.+.|++++|.+++..+ .+.+..+
T Consensus 173 l~~l~~~~~~~-------------------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l-~k~~~~~ 220 (398)
T PRK10747 173 RHGVDKLLEVA-------------------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSM-AKAHVGD 220 (398)
T ss_pred HHHHHHHHhcC-------------------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHcCCCC
Confidence 77776665433 246677778888888889999999888888 5544332
Q ss_pred ChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCChhhHHHHHHH
Q 044812 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS--FNKDAITWSSIVSG 333 (547)
Q Consensus 256 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~ 333 (547)
+.. ...+ ...+|..++.......+.+...++++..+ .+.++.....+...
T Consensus 221 ~~~-~~~l---------------------------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 221 EEH-RAML---------------------------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHH-HHHH---------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 211 1100 00122223333333445566666666653 23466778888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHH
Q 044812 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (547)
+...|+.++|..++++..+. .|+.... ++.+....++.+++.+..+...+.+ +-|...+..+...+.+.|++++
T Consensus 273 l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999888874 4454322 2334445688999999999887653 4466778888999999999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 414 ALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 414 A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
|.+.|++. ...|+...+..+..++.+.|+.++|.+++++.+.+
T Consensus 347 A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 347 ASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999987 66799998888999999999999999999988765
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=1.4e-11 Score=118.42 Aligned_cols=255 Identities=9% Similarity=0.083 Sum_probs=193.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHH--hHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV--SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (547)
|-....+..+.|+++.|.+.+.++ .+ ..|+..... .....+...|+++.|...++.+.+.. +-+......+...
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A-~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~ 196 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERA-AE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQA 196 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 434455668999999999999988 44 455554333 33567888999999999999998877 5677888899999
Q ss_pred HHhcCCHHHHHHHHhcCCC--CCChh--------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 302 YSKCGSLDCARRVFEDSSF--NKDAI--------TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 302 ~~~~g~~~~A~~~~~~~~~--~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
|.+.|++++|.+++..+.. ..+.. .|..++.......+.+...++|+.+-+. .+.+......+...+..
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHH
Confidence 9999999999988876420 11121 2333344444455566667777766443 34577888899999999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
.|+.++|..++++..+. .|+.... ++.+....++.+++++.+++. ...|+ ...+..+...|.+.+++++|.+.
T Consensus 276 ~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred CCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988764 4555332 334444569999999999887 44564 55788999999999999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
|+++.+..|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 351 le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 351 FRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999864 5678999999999999999999997643
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.8e-12 Score=122.57 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=209.4
Q ss_pred HHHHHHhhcCC--CC-hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC-ChHHHHhHHHHhhccCCchhHHHHHHHH
Q 044812 208 RSRRVFDQMKR--RN-VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSSLIGLSGGKQIHGFA 283 (547)
Q Consensus 208 ~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 283 (547)
+|...|..++. +| ......+..+|...+++++|.++|+.+........ +..+|...+.-+-+ +-+..++.+-
T Consensus 337 ~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~ 412 (638)
T KOG1126|consen 337 EALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQD 412 (638)
T ss_pred HHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHH
Confidence 35555655432 23 34445677899999999999999998844333333 34566666654422 1222222222
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHH
Q 044812 284 IRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DII 360 (547)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~ 360 (547)
.-.-.+..+.+|.++.++|.-+++.+.|++.|++ ..+.| ...+|+.+..-+.....+|.|...|+..+.. .| +..
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYn 490 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYN 490 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhH
Confidence 2222266788999999999999999999999987 44555 6678888888889999999999999988653 33 244
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSAS 437 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 437 (547)
.|..+...|.+.++++.|+-.|+++. .+.| +......+...+.+.|+.++|+++++++ ...| |+..--.-+..+
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 56677888999999999999999987 4456 6777778888999999999999999987 3334 455555566777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...+++++|+..++++.+.-|++...|..++..|.+.|+.+.|..-|.-+.+..
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 889999999999999999999999999999999999999999999888776544
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=3.1e-11 Score=117.53 Aligned_cols=430 Identities=13% Similarity=0.071 Sum_probs=271.1
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCC----CcchHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 044812 41 QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHK----DVYLYNSLINGYVKNHGHNEALELFSNMYYSN 116 (547)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 116 (547)
.++..+...|+.|+-.+|..++..||..|+.+.|- +|..|.-. +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 57788899999999999999999999999999999 88888642 4556778888777777777665
Q ss_pred CCCCcchHHHHHHHHccCCCcHHHHHHHHHHHH-------hCC--------------CCchhHHHHHHHHHHhcCChHHH
Q 044812 117 VSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK-------IGF--------------VVDVILANSLMSMYVKCGKFSEC 175 (547)
Q Consensus 117 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~g~--------------~~~~~~~~~l~~~~~~~g~~~~A 175 (547)
.|.+.||..|..+|...||+..-..+-+.+.. .|+ +.....-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 57888899999999888887652222221211 121 10111123345555667888888
Q ss_pred HHHhccCCCCChh-hHHHHHHHHHcCC-CchhHHHHHHHHhhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCC
Q 044812 176 LNLFDEMPQRNVG-SWNVRISGHASSG-DFSLVVRSRRVFDQMKR-RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR 252 (547)
Q Consensus 176 ~~~~~~~~~~~~~-~~~~li~~~~~~g-~~~~a~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 252 (547)
++++..++..... +...+++-+.... .+++ .........+ ++..+|..++.+-...|+.+.|..++.+| ++.|
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvek---Ll~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em-ke~g 234 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEK---LLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM-KEKG 234 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHH---HHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH-HHcC
Confidence 8888777642111 1111233332222 2233 4444444444 89999999999999999999999999999 8999
Q ss_pred CCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH--------------------
Q 044812 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR-------------------- 312 (547)
Q Consensus 253 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-------------------- 312 (547)
++.+.+-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+.+.|....+.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 99999988888766 8888899999999999999999988876665555533322111
Q ss_pred ----HHHhc---------------CCCCCChhhHHHHHHHHHhcCChHHHHHH--------------------------H
Q 044812 313 ----RVFED---------------SSFNKDAITWSSIVSGYGLHGKGHEAVLL--------------------------Y 347 (547)
Q Consensus 313 ----~~~~~---------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~--------------------------~ 347 (547)
+.++. .++......|...+... ..|+-+...++ |
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11110 01111112222222111 12222222222 2
Q ss_pred HHHHHc----------C-------------------CCCCH----------------------------HHHHHHHHHHh
Q 044812 348 NKMVCL----------G-------------------SKPDI----------------------------ITIVGVLSACG 370 (547)
Q Consensus 348 ~~m~~~----------g-------------------~~p~~----------------------------~~~~~l~~~~~ 370 (547)
.+.... | ..||. ..-+.++..|+
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 111110 0 01111 00112222222
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-----VEPSPSIWGALVSASVMHGNSEM 445 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~ 445 (547)
+.-+..+++..-+..... - -...|..|++.+......+.|..+.++.. +.-|..-+..+...+.+.+....
T Consensus 471 se~n~lK~l~~~ekye~~-l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~d 546 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDL-L---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYD 546 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-H---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHH
Confidence 222222332222222111 1 12567788888888888999999888873 33456667778888889999999
Q ss_pred HHHHHHHHHhh---CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCcc
Q 044812 446 QDLAYKSLIQL---EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494 (547)
Q Consensus 446 a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 494 (547)
+..+++++.+. .|....++..+.+.....|+.+.-.++.+-+...|+.-
T Consensus 547 l~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 547 LSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 99999888764 24445567777788888899999999888888888765
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.6e-11 Score=106.79 Aligned_cols=378 Identities=12% Similarity=0.126 Sum_probs=242.9
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchH--HHHHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL--ATISK 129 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~ 129 (547)
.-|+..+-.....+.+.|....|+..|......-+..|.+-+....-..+.+.+..+...+ ..|..-. -.+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l-----~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL-----PSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC-----cccchHHHHHHHHH
Confidence 3444444444445566677777777777665533444444443332223333332222111 1121111 12445
Q ss_pred HHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCh------hhHHHHHHHHHcCCCc
Q 044812 130 LSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNV------GSWNVRISGHASSGDF 203 (547)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~ 203 (547)
++......+++.+-.+.....|++.+...-+....+.-...|+|+|+.+|+++.+.|+ .+|+.++-+ ++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 6666678888888888888888887777777777777788999999999999987544 355544433 22222
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC-hHHHHhHHHHhhccCCchhHHHHHHH
Q 044812 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN-KVSLVSVLPTCSSLIGLSGGKQIHGF 282 (547)
Q Consensus 204 ~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 282 (547)
..+--|..++ .+.+--+.|+..+.+-|.-.++.++|...|++. .+ +.|. ...|+.+.+-|....+...|..-++.
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRA-Lk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRA-LK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHH-Hh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2211122222 223345567788888888889999999999887 44 3443 45677777888888888888888888
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 044812 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360 (547)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 360 (547)
+++.+ +.|-..|..|..+|.-.+-..-|+-.|++ ..++ .|...|.+|..+|.+.++.++|...|++....|-. +..
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 88876 66777888888888888888888888876 2233 46678888888888888888888888888876533 567
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhc---C-CCC-chhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTY---R-IKP-TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS 435 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 435 (547)
.+..|...+.+.++..+|...|.+..+.. | +.| ......-|..-+.+.+++++|....... .
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~-------------~ 534 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV-------------L 534 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH-------------h
Confidence 78888888888888888888887766532 2 122 2222233455566667776665443332 1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
. -....++|..+++++.+..
T Consensus 535 ~--~~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 535 K--GETECEEAKALLREIRKIQ 554 (559)
T ss_pred c--CCchHHHHHHHHHHHHHhc
Confidence 1 1334677777777776654
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.1e-12 Score=123.98 Aligned_cols=280 Identities=14% Similarity=0.178 Sum_probs=187.8
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC------ChhhHHHHHHHHHcCCCchhHHHH
Q 044812 136 DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR------NVGSWNVRISGHASSGDFSLVVRS 209 (547)
Q Consensus 136 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~a 209 (547)
+..+|...|...-+ .+.-+..+...+.++|...+++++|.++|+.+.+. +...|.+.+-.+-+.-...- .
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~---L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSY---L 409 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHH---H
Confidence 45677777777333 23444566777888888888888888888887652 44455554443322211111 1
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC
Q 044812 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289 (547)
Q Consensus 210 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 289 (547)
-+-+-.+.+..+.+|.++.++|.-+++.+.|++.|++. .. +.|
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RA-iQ--ldp---------------------------------- 452 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRA-IQ--LDP---------------------------------- 452 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHh-hc--cCC----------------------------------
Confidence 11112222345667777777777777777777777766 22 222
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFED-SSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVL 366 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~ 366 (547)
-...+|+.+.+-+.....+|.|...|+. +++. .+...|.-+.-.|.+.++++.|.-.|++..+- .| +......+.
T Consensus 453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g 530 (638)
T KOG1126|consen 453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIG 530 (638)
T ss_pred ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhh
Confidence 2455666666667777778888888876 2322 23345666777888899999999888888874 45 456666677
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCH
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNS 443 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 443 (547)
..+.+.|+.++|+++++++..- .| ++..--..+..+...+++++|+..++++ ...|+ ...+..++..|.+.|+.
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~l---d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHL---DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhc---CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 7788889999999999988743 33 4433334566677789999999999988 34565 45788888999999999
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 044812 444 EMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~ 461 (547)
+.|+..|.-+.+++|.-.
T Consensus 608 ~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 608 DLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHhhHHHhcCCCccc
Confidence 999999999999987643
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=7e-14 Score=128.40 Aligned_cols=258 Identities=17% Similarity=0.153 Sum_probs=79.0
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCC-CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044812 93 INGYVKNHGHNEALELFSNMYYSNVSP-DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171 (547)
Q Consensus 93 l~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 171 (547)
...+.+.|++++|+++++.......+| |...|..+...+...++++.|...++.+...+. -+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 455556667777777765443332122 333334444555566667777777776666542 244555555555 56677
Q ss_pred hHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC
Q 044812 172 FSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD 251 (547)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 251 (547)
+++|..+++..-+.+ ++...+..++..+...++++++.++++......
T Consensus 93 ~~~A~~~~~~~~~~~--------------------------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~ 140 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--------------------------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELP 140 (280)
T ss_dssp ---------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T
T ss_pred ccccccccccccccc--------------------------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 777766665543221 233445556666667777777777777663222
Q ss_pred CCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCChhhHHH
Q 044812 252 RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS--FNKDAITWSS 329 (547)
Q Consensus 252 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 329 (547)
..+++...|..+...+.+.|+.++|...+++..+.. |.+..+.+.++..+...|+.+++.++++... .+.|...+..
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDA 219 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHH
Confidence 234455555556666666666666666666666654 3345566666666666676666555554321 0344455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
+..+|...|+.++|+.+|++..+.. +.|......+..++...|+.++|.++.+++.
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 6677777777777777777766642 2256666666677777777777776666554
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=9.3e-10 Score=100.14 Aligned_cols=428 Identities=11% Similarity=0.097 Sum_probs=306.2
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATIS 128 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 128 (547)
..+...|-...+.--..+++..|..+|+.... .+...|-..+..-.++.....|..+++.....=...|. .|.-.+
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 45667777777777778888889998888765 56677777788888888888888888887764222222 233333
Q ss_pred HHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC--CCChhhHHHHHHHHHcCCCchhH
Q 044812 129 KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP--QRNVGSWNVRISGHASSGDFSLV 206 (547)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a 206 (547)
..=...|++..|.++|+.-.+ ..|+...|++.|+.-.+-..++.|..++++.. .|++.+|--...--.+.|+...
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~- 225 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVAL- 225 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHH-
Confidence 344556888888888887765 57888889888888888888889988888764 5788888777777778888777
Q ss_pred HHHHHHHhhcCC------CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC--hHHHHhHHHHhhccCCchhHHH
Q 044812 207 VRSRRVFDQMKR------RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN--KVSLVSVLPTCSSLIGLSGGKQ 278 (547)
Q Consensus 207 ~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~ 278 (547)
+..++....+ .+...+.+....=.++..++.|.-+|+-. ... ++-+ ...|......=-+-|+......
T Consensus 226 --aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyA-ld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 226 --ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYA-LDH-IPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred --HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 4444444332 13345666666666778889999988876 332 2222 3445544444444555444333
Q ss_pred H--------HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc--CCCCCChh--hHHHHHHH--------HHhcC
Q 044812 279 I--------HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED--SSFNKDAI--TWSSIVSG--------YGLHG 338 (547)
Q Consensus 279 ~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~--~~~~li~~--------~~~~~ 338 (547)
. ++.+++.+ +.|-.+|--.++.-...|+.+...++|++ .+++|-.. .|...|-. -....
T Consensus 302 ~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 34444444 56777788888888889999999999987 34344211 23222221 13467
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHH
Q 044812 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSA----CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414 (547)
Q Consensus 339 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (547)
+++.+.++|+..++. ++-...||.-+--. -.++.++..|.+++...+ |.-|...++...|..-.+.+.++.+
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHH
Confidence 889999999999884 34345666544333 356788999999999887 8899999999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 415 LDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 415 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
..++++. ...| +-.+|......-...|+.+.|..+|+-+++.... ....|...+..-...|.++.|..+++++.+.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999987 5556 5568988888888999999999999998875311 1336778888888999999999999999876
Q ss_pred CC
Q 044812 491 GL 492 (547)
Q Consensus 491 ~~ 492 (547)
.-
T Consensus 537 t~ 538 (677)
T KOG1915|consen 537 TQ 538 (677)
T ss_pred cc
Confidence 53
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=7.4e-11 Score=114.14 Aligned_cols=132 Identities=9% Similarity=-0.054 Sum_probs=78.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT--I-VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (547)
.+...+..+...+...|+.++|..++++..+. .||... + ..........++.+.+.+.++...+...-.|+....
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 35666777777777777778887777777775 333221 1 111111233456666666666665542111211445
Q ss_pred HHHHHHhHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 399 ACVVDMLGRAGQLDRALDFIKT--M-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
.++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666677777777777763 2 4456666666667777777777777777766544
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=6.1e-11 Score=114.75 Aligned_cols=259 Identities=10% Similarity=0.013 Sum_probs=182.3
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH--HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV--SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
..+-....++.+.|+++.|.+.+.+. .+. .|+.. ........+...|+++.|...++.+.+.. |-+..+...+.
T Consensus 119 ~~~llaA~aa~~~g~~~~A~~~l~~a-~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~ 194 (409)
T TIGR00540 119 LNLIKAAEAAQQRGDEARANQHLEEA-AEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAE 194 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34455567788889999999999887 442 34432 33334777788899999999999998886 55667888899
Q ss_pred HHHHhcCCHHHHHHHHhcCC-C-CCChhhHHH----HHHHHHhcCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHh
Q 044812 300 DMYSKCGSLDCARRVFEDSS-F-NKDAITWSS----IVSGYGLHGKGHEAVLLYNKMVCLGS---KPDIITIVGVLSACG 370 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~l~~~~~ 370 (547)
..+...|+++.|.+.++... . ..+...+.. ...+....+..+++.+.+..+.+... +.+...+..+...+.
T Consensus 195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 195 EAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI 274 (409)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH
Confidence 99999999999999887632 0 223332221 11122333333333445555554321 137788888999999
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhH---HHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-H--HHHHHHHHHHHHcCCH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEI---CACVVDMLGRAGQLDRALDFIKTM-PVEPS-P--SIWGALVSASVMHGNS 443 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~--~~~~~l~~~~~~~~~~ 443 (547)
..|+.++|.+.+++..+. .|+... ...........++.+.+.+.+++. ...|+ + ....++...+.+.|++
T Consensus 275 ~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~ 351 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF 351 (409)
T ss_pred HCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH
Confidence 999999999999999875 343331 111222223457888888888776 33443 3 5677899999999999
Q ss_pred HHHHHHHHH--HHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 444 EMQDLAYKS--LIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 444 ~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
++|.+.|++ ..+..|+ +..+..++..+.+.|+.++|.+++++-.
T Consensus 352 ~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999995 5556674 5567899999999999999999999854
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=8.5e-10 Score=100.82 Aligned_cols=221 Identities=10% Similarity=0.030 Sum_probs=174.2
Q ss_pred HHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044812 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 308 (547)
..+.-.|+...|..-|+.. ......++ ..|..+..+|....+.++..+.|+...+.+ +.++.+|..-..++.-.+++
T Consensus 334 tF~fL~g~~~~a~~d~~~~-I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAA-IKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhcCCchhhhhhHHHH-HhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 3455678899999999988 44322222 237778888999999999999999999887 56777888888888889999
Q ss_pred HHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 309 DCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 309 ~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
+.|..-|++. .+.| +...|-.+.-+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+..+
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999873 3334 4556777777778899999999999999887 44457899999999999999999999999987
Q ss_pred HhcCCCCc---------hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 387 NTYRIKPT---------TEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 387 ~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
+- .|+ +.+.-.++..- -.+++..|.+++++. .+.|- ...|..|...-.+.|+.++|+++|++...
T Consensus 490 ~L---E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 490 EL---EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hh---ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 53 333 22222333322 448999999999987 56664 45899999999999999999999999887
Q ss_pred hC
Q 044812 456 LE 457 (547)
Q Consensus 456 ~~ 457 (547)
+-
T Consensus 566 lA 567 (606)
T KOG0547|consen 566 LA 567 (606)
T ss_pred HH
Confidence 64
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=5.7e-10 Score=99.66 Aligned_cols=287 Identities=11% Similarity=0.068 Sum_probs=188.0
Q ss_pred CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC--C--hhhHHHHHHHHHcCCCchhHHHH
Q 044812 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR--N--VGSWNVRISGHASSGDFSLVVRS 209 (547)
Q Consensus 134 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~a~~a 209 (547)
.|+|..|++....-.+.+.. ....|..-.++--..|+.+.+-..+.+..++ | ....-.........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 34555555555554444422 1222333334444455555555555554432 1 11222333344444544444444
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC
Q 044812 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN 289 (547)
Q Consensus 210 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 289 (547)
..-+.+|...++........+|.+.|++.....++..+ .+.+.-.++..- .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L-~ka~~l~~~e~~----------------------------~ 226 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL-RKAGLLSDEEAA----------------------------R 226 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH-HHccCCChHHHH----------------------------H
Confidence 44455555667777888888888888888888888888 666655443211 0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDSS--FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 367 (547)
....+|..+++-....+..+.-...+++.+ .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+. . ..-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~-~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---C-RLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---H-HHH
Confidence 122345566666555566666566666643 2345666677888889999999999999999988777762 2 223
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a 446 (547)
.+.+.++...-++..++-.+.++.. +..+.+|...|.+.+.+.+|...|+.. +..|+..+|+.+..++.+.|++.+|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 4667778777777777777665444 477888899999999999999999876 7789999999999999999999999
Q ss_pred HHHHHHHHhh
Q 044812 447 DLAYKSLIQL 456 (547)
Q Consensus 447 ~~~~~~~~~~ 456 (547)
.++.++.+..
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=1.5e-10 Score=103.65 Aligned_cols=199 Identities=11% Similarity=0.105 Sum_probs=162.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3556777888899999999999998762 2233 45677888889999999999999999988764 3356677788888
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 446 (547)
+...|++++|.+.+++.............+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998764222234566777888899999999999999887 3334 456788899999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888889999999999999999998887543
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=9.8e-10 Score=98.18 Aligned_cols=261 Identities=12% Similarity=0.094 Sum_probs=197.8
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHH
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 298 (547)
.....|..-+.+..+.|+.+.+-.++.+. .+..-.++..............|+++.|..-+..+.+.+ +-.+.+....
T Consensus 116 ~p~l~~l~aA~AA~qrgd~~~an~yL~ea-ae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa 193 (400)
T COG3071 116 QPVLAYLLAAEAAQQRGDEDRANRYLAEA-AELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLA 193 (400)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHH
Confidence 34556666778888899999999999888 554345555566667777888999999999999888877 5567788889
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 299 IDMYSKCGSLDCARRVFEDSS---FNKD-------AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 299 ~~~~~~~g~~~~A~~~~~~~~---~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
.++|.+.|++.....++.++. .-.+ ..+|+.+++-....+..+.-...|+..-.. .+-++..-..++.-
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~ 272 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAER 272 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHH
Confidence 999999999999999987643 1112 235777777666666677767777776544 44556677788888
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHcCCHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT----MPVEPSPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~p~~~~~~~l~~~~~~~~~~~ 444 (547)
+...|+.++|.++..+..+. +..|+... + -...+-++.+.-.+..++ .+. ++..+.+|+..|.+.+.+.
T Consensus 273 li~l~~~~~A~~~i~~~Lk~-~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKR-QWDPRLCR---L-IPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHcCChHHHHHHHHHHHHh-ccChhHHH---H-HhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHH
Confidence 99999999999999998877 66666222 2 233455555554444443 343 3478899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+|...|+.+++..| +...|..++.++.+.|+..+|.+..++....
T Consensus 346 kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 346 KASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999988888 5779999999999999999999999887643
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=8e-10 Score=95.76 Aligned_cols=265 Identities=10% Similarity=0.072 Sum_probs=144.3
Q ss_pred cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCChHHH
Q 044812 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD---VILANSLMSMYVKCGKFSEC 175 (547)
Q Consensus 99 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~g~~~~A 175 (547)
++++++|+++|-+|.+... -+..+-.+|.+.+.+.|..+.|+++++.+.+..--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4678888888888876321 1333445577788888888888888887765321111 22345566777888888888
Q ss_pred HHHhccCCCCChh---hHHHHHHHHHcCCCchhHHHHHHHHhhcCC-C----ChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 176 LNLFDEMPQRNVG---SWNVRISGHASSGDFSLVVRSRRVFDQMKR-R----NVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 176 ~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~a~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
+.+|..+.+.+.. ....|+..|-...++++|.++-+-+..+.. + -...|..+...+....+++.|..++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888887763322 344455555555555554443333333322 1 1134555666666666666666666665
Q ss_pred hhcCCCCCC-hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChh
Q 044812 248 QLKDRIEPN-KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAI 325 (547)
Q Consensus 248 ~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~ 325 (547)
.+. .|+ ...-..+.+.....|+++.|.+.++...+.+...-..+...|..+|...|+.++....+.+ +...++..
T Consensus 207 -lqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 207 -LQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred -Hhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 221 121 1222233344555566666666666666555444455555566666666666666555554 22233333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 369 (547)
.-+.+...-....-.+.|..++.+-... +|+...+..++...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 3333333333333344444444443332 45555555555543
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=9.1e-10 Score=95.43 Aligned_cols=295 Identities=13% Similarity=0.113 Sum_probs=207.6
Q ss_pred cCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHch
Q 044812 169 CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ 248 (547)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 248 (547)
..+.++|.+.|-+|.+.|.. ...+.-+|.+.|-+.|..|.|+++-+.+.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-------------------------------t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~ 96 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-------------------------------TFEAHLTLGNLFRSRGEVDRAIRIHQTLL 96 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-------------------------------hhHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 46667777777777654432 23345567788888888888888888773
Q ss_pred hcCCCCCCh--HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCC
Q 044812 249 LKDRIEPNK--VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS---SFNKD 323 (547)
Q Consensus 249 ~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~ 323 (547)
...+..-+. ...-.+..-|...|-++.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++ +-++.
T Consensus 97 ~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~ 175 (389)
T COG2956 97 ESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY 175 (389)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence 222222221 223345566777888888888888888755 334456777899999999999999987753 21222
Q ss_pred h----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 324 A----ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 324 ~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
. ..|.-+...+....+.++|..++.+..+...+ ....-..+.+.....|+++.|.+.++.+.+. +..--..+..
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~ 253 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLE 253 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHH
Confidence 1 13555666666788999999999999886322 2333345667788999999999999999876 4444567888
Q ss_pred HHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH---cCC
Q 044812 400 CVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA---SSR 475 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g 475 (547)
.|..+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+...| +...+..|+..-. ..|
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhcccccc
Confidence 9999999999999999999886 4455555555555555555667777777777777777 4556666666554 346
Q ss_pred CHHHHHHHHHHHHhCCCccCCcc
Q 044812 476 RWDAVAELRTMMKDRGLKKSPGC 498 (547)
Q Consensus 476 ~~~~A~~~~~~m~~~~~~~~~~~ 498 (547)
++.+....+++|....++.+|..
T Consensus 333 ~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 333 RAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred chhhhHHHHHHHHHHHHhhcCCc
Confidence 78999999999988777777754
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=2.2e-08 Score=95.02 Aligned_cols=433 Identities=11% Similarity=0.053 Sum_probs=249.8
Q ss_pred ccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHH
Q 044812 33 HRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELF 109 (547)
Q Consensus 33 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~ 109 (547)
.+.+.....+.+.+++ +.+-.+.+.....-.+...|+-++|....+...+ .+.++|+.+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4555555666666666 3343444444444445556777777777666544 34567777766666667777777777
Q ss_pred HHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhh
Q 044812 110 SNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGS 189 (547)
Q Consensus 110 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 189 (547)
......+. -|...+.-+.-.-+..|+++..........+.. +.....|..+..++.-.|+...|..++++..+...
T Consensus 99 ~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-- 174 (700)
T KOG1156|consen 99 RNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-- 174 (700)
T ss_pred HHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 77766432 133445555445556666666666666665543 23444566666666667777777766665432110
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHH------HHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhH
Q 044812 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA------MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263 (547)
Q Consensus 190 ~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~------li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l 263 (547)
. .++...|.- -.....+.|..+.|++.+..- +. .+.-....-..-
T Consensus 175 -------------------------~--~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~-e~-~i~Dkla~~e~k 225 (700)
T KOG1156|consen 175 -------------------------T--SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN-EK-QIVDKLAFEETK 225 (700)
T ss_pred -------------------------c--CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh-hh-HHHHHHHHhhhH
Confidence 0 122222221 123455677777777777654 21 122222222333
Q ss_pred HHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhcCCCC-CChhhHHHHHHHHHhcCC-h
Q 044812 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR-RVFEDSSFN-KDAITWSSIVSGYGLHGK-G 340 (547)
Q Consensus 264 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~-~~~~~~~~li~~~~~~~~-~ 340 (547)
...+.+.+++++|..++..+...+ +.+...|-.+..++.+..+.-++. .+|....-. |-...-..+--......+ .
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhH
Confidence 455677788888888888877764 333334444555554333333333 566542211 111110111111111122 3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH---HHHHHHhcC----------CCCchhHH--HHHHHHh
Q 044812 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI---YNSVINTYR----------IKPTTEIC--ACVVDML 405 (547)
Q Consensus 341 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~---~~~~~~~~~----------~~~~~~~~--~~l~~~~ 405 (547)
+..-.++..+.+.|+++-...+.+|. -.....+-..++ +.......| -+|....| -.++..+
T Consensus 305 ~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 34456677788888776444433333 222211111111 111111101 14454444 4567888
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 406 GRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
-+.|+++.|..+++.. ...|+.+ .|..-.+.+...|++++|...++++.+++..|...-..-+.-..++++.++|.++
T Consensus 382 D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred HHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHH
Confidence 8999999999999987 6678765 6777778899999999999999999999977766655788889999999999999
Q ss_pred HHHHHhCCCc-----cCCccceEee
Q 044812 484 RTMMKDRGLK-----KSPGCSWISI 503 (547)
Q Consensus 484 ~~~m~~~~~~-----~~~~~~~~~~ 503 (547)
...+-+.|.. .+..|.|..+
T Consensus 462 ~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 462 LSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHhhhcccchhhhHHHhhhHHHhH
Confidence 9999877752 2235567655
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=2.1e-10 Score=111.98 Aligned_cols=251 Identities=12% Similarity=0.076 Sum_probs=133.9
Q ss_pred HHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 044812 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186 (547)
Q Consensus 107 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 186 (547)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34556666777777777777777777777777777 7777766666666777777777766666655544 566
Q ss_pred hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC----------------------CChhhHHHHHHHHHHCCCHHHHHHHH
Q 044812 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQMKR----------------------RNVYAWTAMINGYVQNGDLDEALVLF 244 (547)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~----------------------~~~~~~~~li~~~~~~~~~~~A~~~~ 244 (547)
..+|+.|..+|...||+..-+.+.+.+..+.. .....-...+......|.++.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777776543333332221110 00011122344445556666666666
Q ss_pred HHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCC
Q 044812 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS---SFN 321 (547)
Q Consensus 245 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~ 321 (547)
..+.......|-.. +++-+... ..-.+++........-.|+..++..++++-...|+.+.|..++.+| |+.
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 55522222222211 12222221 2222233322222111355666666666666666666666666543 333
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 374 (547)
.+..-|..|+-+ .++..-+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 333333444333 55555556666666666666666666655555555443
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=1.2e-08 Score=98.67 Aligned_cols=430 Identities=14% Similarity=0.017 Sum_probs=247.6
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 044812 43 HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119 (547)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 119 (547)
+.++....+.-|+..|..|.-++.+.|++..+-+.|++... .....|+.+-..+...|.-..|+.+++.-....-.|
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 44445555667899999999999999999999999988764 355678888888999999999999998876543334
Q ss_pred -CcchHHHHHHHH-ccCCCcHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcC-----------ChHHHHHHhccC
Q 044812 120 -DDFTLATISKLS-GEIKDLNVGMLIHGLSIKIG--F--VVDVILANSLMSMYVKCG-----------KFSECLNLFDEM 182 (547)
Q Consensus 120 -~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~ 182 (547)
|...+-..-..| .+.+.++++..+-.+++... . ......|..+.-+|...- ...++...+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 334444444444 45577788877777776621 1 122334444444443221 123455555555
Q ss_pred CCCC---hhhHHHHHHHHHcCCCchhHHHHHHHHhhc-CCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH
Q 044812 183 PQRN---VGSWNVRISGHASSGDFSLVVRSRRVFDQM-KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258 (547)
Q Consensus 183 ~~~~---~~~~~~li~~~~~~g~~~~a~~a~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 258 (547)
.+.+ ....-.+.--|+..++++.|.+-.+-+-.+ ...+...|..++-.+...+++.+|+.+.+....+.|. |..
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~ 548 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHV 548 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhh
Confidence 4322 212222222344445555433222222223 3345555555555556666666666665554222221 111
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CC-hhhHHHHHHH
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN----KD-AITWSSIVSG 333 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~li~~ 333 (547)
....-+..-..-++.+++......+... |... ......|+-....++...++.. .+ ..++..+..-
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 1111122222233444433333332210 0000 0000111112222222222211 11 1122222211
Q ss_pred HHhcC---ChHHHHHHHHHHHHcCCCC--C------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044812 334 YGLHG---KGHEAVLLYNKMVCLGSKP--D------IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402 (547)
Q Consensus 334 ~~~~~---~~~~a~~~~~~m~~~g~~p--~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 402 (547)
....+ ..+.. +...-+.| + ...+......+.+.+..++|...+.+.... .+.....|....
T Consensus 620 ~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G 691 (799)
T KOG4162|consen 620 VASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRG 691 (799)
T ss_pred HHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhh
Confidence 11111 11111 11111222 2 123445556678888899998888777542 234677788778
Q ss_pred HHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCCchHHHHHHHHHcCCCHH
Q 044812 403 DMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDL--AYKSLIQLEPENPSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 478 (547)
..+...|.+++|.+.|... .+.|+ +.+..++...+.+.|+...|.. ++..+.+.+|.++.+|..++.++.+.|+.+
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 8889999999999999876 56675 4588999999999999888888 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 044812 479 AVAELRTMMKDRG 491 (547)
Q Consensus 479 ~A~~~~~~m~~~~ 491 (547)
.|.+.|....+..
T Consensus 772 ~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 772 QAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999876543
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=6.7e-12 Score=80.57 Aligned_cols=50 Identities=32% Similarity=0.477 Sum_probs=46.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=4.2e-12 Score=81.54 Aligned_cols=50 Identities=36% Similarity=0.557 Sum_probs=43.4
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHcc
Q 044812 84 KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133 (547)
Q Consensus 84 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 133 (547)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=4e-09 Score=101.22 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=67.3
Q ss_pred chHHHHHHHHccCCCcHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHH
Q 044812 122 FTLATISKLSGEIKDLNVGMLIHGLSIKI-----GF-VVDV-ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRI 194 (547)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 194 (547)
.+...+...|...|+++.|..++++.++. |. .|.. ...+.+...|...+++++|..+|++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~------------- 266 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE------------- 266 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-------------
Confidence 45555778888888888888888877665 21 1222 2234466677788888888888877
Q ss_pred HHHHcCCCchhHHHHHHHHhhcC----CCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 195 SGHASSGDFSLVVRSRRVFDQMK----RRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 195 ~~~~~~g~~~~a~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
|+.+++... +.-..+++.|...|.+.|++++|...+++.
T Consensus 267 --------------AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 267 --------------ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred --------------HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 444444332 223457777888888888888888888766
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.6e-09 Score=103.86 Aligned_cols=229 Identities=17% Similarity=0.211 Sum_probs=160.5
Q ss_pred HHhHHHHhhccCCchhHHHHHHHHHHc-----C-CCCchh-HHHHHHHHHHhcCCHHHHHHHHhc--------CC-CCCC
Q 044812 260 LVSVLPTCSSLIGLSGGKQIHGFAIRK-----E-LNHDVS-LCNALIDMYSKCGSLDCARRVFED--------SS-FNKD 323 (547)
Q Consensus 260 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~--------~~-~~~~ 323 (547)
...+...|...|+++.|...+++..+. | ..|... ..+.+...|...+++.+|..+|++ .| ..|.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333444455555555555554444432 1 122222 233577788888999988888875 23 0122
Q ss_pred -hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcC--CCC
Q 044812 324 -AITWSSIVSGYGLHGKGHEAVLLYNKMVCL-----GS-KPDI-ITIVGVLSACGRSGLINEGLEIYNSVINTYR--IKP 393 (547)
Q Consensus 324 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~ 393 (547)
..+++.|..+|.+.|++++|...+++..+- |. .|.. .-++.+...|+..+++++|..+++...+.+. +.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 235778888899999999888887776432 22 2222 3456677778999999999999988766543 222
Q ss_pred ----chhHHHHHHHHhHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 044812 394 ----TTEICACVVDMLGRAGQLDRALDFIKTM---------PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQL--- 456 (547)
Q Consensus 394 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 456 (547)
-..+++.|...|...|++++|.+++++. +..+. ...++.+...|.+.+++.+|.++|.+...+
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 2467899999999999999999999876 12232 457788999999999999999999988654
Q ss_pred -CCC---CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 457 -EPE---NPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 457 -~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
+|+ ...+|..|+.+|.+.|++++|.++.+...
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344 44578899999999999999999988774
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=4.6e-08 Score=86.03 Aligned_cols=442 Identities=11% Similarity=-0.028 Sum_probs=237.0
Q ss_pred HHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHH
Q 044812 30 SATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEAL 106 (547)
Q Consensus 30 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~ 106 (547)
+....++.-|..+++--...+-.-...+-.=+...+.+.|++++|...|..+.. ++...+-.|..++.-.|.+.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 344566677777776555433221112222233455667888888888877653 44555555555555567777877
Q ss_pred HHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 044812 107 ELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN 186 (547)
Q Consensus 107 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 186 (547)
.+-....+ ++-.-..++...-+.++-++-..+.+.+... ..-.-+|.......-++.+|++++.++...+
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77665432 2233344555555666666666555544322 2223345555555567888888888877643
Q ss_pred --hhhHHHHH-HHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhH
Q 044812 187 --VGSWNVRI-SGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSV 263 (547)
Q Consensus 187 --~~~~~~li-~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~l 263 (547)
....|.-+ -+|.+..-++-+.+.++++-+-...++..-|..+....+.=.-..|..-.+++ .+.+-+.-+..-..+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l-adN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL-ADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH-HhcccccchhHHHHH
Confidence 33444433 45666666676666666665555555666666665555543333333333333 221111100000000
Q ss_pred HHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcC-----
Q 044812 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG----- 338 (547)
Q Consensus 264 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~----- 338 (547)
-.-+.--.+-+.|.+++--+.+. - +..--.|+-.|.+.|++.+|..+.++.. +.++.-|-.-.-.++..|
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~-PttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLD-PTTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcC-CCChHHHHHHHHHHHHhhhhcCc
Confidence 00111112334555554444332 1 1223345556788888888888888876 444433322222233333
Q ss_pred --ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 044812 339 --KGHEAVLLYNKMVCLGSKPDI-ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 339 --~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
...-|.+.|.-.-+++...|. ..-.++..++.-..++++.+.+++.+.. +=...|...+| +.++++..|.+.+|+
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHH
Confidence 234455555544444433332 1223344444555677788877777743 23333444443 677888888888888
Q ss_pred HHHHhCC--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCC-chHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 416 DFIKTMP--VEPSPSIWG-ALVSASVMHGNSEMQDLAYKSLIQLE-PENP-SNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 416 ~~~~~~~--~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
++|-+.. .-.|..+|. .|.++|.+.+.++.|..++-+ .+ |.+. ......++-|.+.+.+=-|.+.|+.+...
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 8887762 113444554 455677788888777665433 33 3222 23344556677778777777777777655
Q ss_pred CC
Q 044812 491 GL 492 (547)
Q Consensus 491 ~~ 492 (547)
+.
T Consensus 491 DP 492 (557)
T KOG3785|consen 491 DP 492 (557)
T ss_pred CC
Confidence 43
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.5e-07 Score=83.22 Aligned_cols=262 Identities=12% Similarity=0.038 Sum_probs=170.5
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHH-HHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHH
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS-LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 297 (547)
.|+.....+...+...|+.++|+..|++. .. +.|+..+ +....-.+.+.|+.+....+...+.... ..+...|-.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~-~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSST-LC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHH-hh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 46667777778888888888888888766 22 3443322 2222333456667776666666665443 122333333
Q ss_pred HHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCc
Q 044812 298 LIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGL 374 (547)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 374 (547)
-+......++++.|+.+-++ +...| +...|-.-...+...+++++|.-.|+..+.. .| +...|..|+.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhch
Confidence 44455566778888877765 22222 3334444445677778888888888887764 43 67788888888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHH-HHh-HhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVV-DML-GRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNSEMQDLAY 450 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~ 450 (547)
+.+|.-.-+...+. ++.+..+...+. ..+ ..-..-++|..++++. .+.|+-. ..+.+...|...|..+.++.++
T Consensus 384 ~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 88887777766553 233455554442 222 2223447788888775 6677643 6666777788888888888888
Q ss_pred HHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 451 KSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
++.+...|+ ......|++.+...+.+++|.+.|....+
T Consensus 462 e~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 462 EKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888887774 56788888888888888888888876654
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=9.9e-10 Score=95.22 Aligned_cols=228 Identities=13% Similarity=0.060 Sum_probs=183.3
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhhH-HHHHHHHHh
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITW-SSIVSGYGL 336 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~-~~li~~~~~ 336 (547)
.-.-+.++|.+.|.+..|.+.++...+. .|-+.||..|-.+|.+..+++.|+.++.+ +..-|..++| .-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3455677888888888888888877766 45566777888899999999999999876 4434555554 446677778
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (547)
.++.++|.++|+...+.. +.+......+...|...++.+.|..+++++..- |+ .+++.|+.+.-+|.-.++++-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 888999999999888752 335666677777788888999999999988765 54 477888888888888889998888
Q ss_pred HHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 417 FIKTM---PVEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 417 ~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
-|++. .-.|+ ..+|-.+.......||+..|.+.|+-++..++++...++.|+..-.+.|++++|..+++...+..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88776 12243 45888899989999999999999999999999999999999999999999999999999877654
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=5.1e-09 Score=93.70 Aligned_cols=197 Identities=14% Similarity=0.125 Sum_probs=115.0
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044812 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300 (547)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 300 (547)
...+..+...+...|++++|.+.+++. .. .. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~-l~-----------------------------------~~-p~~~~~~~~la~ 73 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKA-LE-----------------------------------HD-PDDYLAYLALAL 73 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-HH-----------------------------------hC-cccHHHHHHHHH
Confidence 345566666666666666666666665 22 21 222334445555
Q ss_pred HHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHH
Q 044812 301 MYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINE 377 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 377 (547)
.+...|++++|.+.+++. .. +.+...+..+...+...|++++|...+.+.......| ....+..+..++...|++++
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 555566666666655541 11 2233455555666666666666666666665532222 23445556666677777777
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 378 GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 378 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
|...+++..+.. +.+...+..+...+...|++++|...+++. .. ..+...+..+...+...|+.+.|..+.+.+.+
T Consensus 154 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 154 AEKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777766431 224556666677777777777777777665 21 23445555666667777777777777766655
Q ss_pred h
Q 044812 456 L 456 (547)
Q Consensus 456 ~ 456 (547)
.
T Consensus 232 ~ 232 (234)
T TIGR02521 232 L 232 (234)
T ss_pred h
Confidence 4
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=4.7e-09 Score=105.71 Aligned_cols=261 Identities=13% Similarity=0.044 Sum_probs=181.6
Q ss_pred ChhhHHHHHHHHHH-----CCCHHHHHHHHHHchhcCCCCCCh-HHHHhHHHHhh---------ccCCchhHHHHHHHHH
Q 044812 220 NVYAWTAMINGYVQ-----NGDLDEALVLFLEMQLKDRIEPNK-VSLVSVLPTCS---------SLIGLSGGKQIHGFAI 284 (547)
Q Consensus 220 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 284 (547)
+...|...+.+-.. .+++++|+.+|++. .. ..|+. ..+..+..++. ..+++++|...++++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~A-l~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQC-VN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHH-Hh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44555555554321 23467899999887 43 44543 34444443332 2345789999999998
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HH
Q 044812 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI-IT 361 (547)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~ 361 (547)
+.+ +.+...+..+..++...|++++|...|++ +...|+ ...+..+...+...|++++|...+++..+. .|+. ..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 876 55677888888999999999999999987 333454 567888889999999999999999999886 4442 23
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASV 438 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~ 438 (547)
+..++..+...|++++|...++++.+. . .| ++..+..+..++...|++++|...++++ +..|+.. ..+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 333444566689999999999988754 2 34 4556777888899999999999999987 4455544 4455555667
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
..| +.|...++.+.+..-..+.....+...|.-.|+-+.+... +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 4788888887765322222223366666677777777666 8877665
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-08 Score=94.61 Aligned_cols=282 Identities=12% Similarity=0.073 Sum_probs=172.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHC
Q 044812 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234 (547)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~ 234 (547)
+......-..-+...+++.+..++++...+.|+. +...+..-|.++...
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-------------------------------h~~~~~~~ia~l~el 291 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPF-------------------------------HLPCLPLHIACLYEL 291 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-------------------------------CcchHHHHHHHHHHh
Confidence 3444444445555666666666666666554332 223333334444455
Q ss_pred CCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044812 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (547)
|+..+-..+=.++ .+ ..+-...+|-++..-|...|..++|+++|.+....+ +.-...|-.+.+.|.-.|.-+.|+..
T Consensus 292 ~~~n~Lf~lsh~L-V~-~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaa 368 (611)
T KOG1173|consen 292 GKSNKLFLLSHKL-VD-LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAA 368 (611)
T ss_pred cccchHHHHHHHH-HH-hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHH
Confidence 5544444444444 11 123334455555555555556666666655554433 11233566777777778888877777
Q ss_pred HhcCC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-C
Q 044812 315 FEDSS-F-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTY-R 390 (547)
Q Consensus 315 ~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~ 390 (547)
+.... . +.....+.-+.--|.+.++.+.|.++|..... +.| |+...+-+.-.....+.+.+|..+|+.....- .
T Consensus 369 Y~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 369 YFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 65410 0 11111122234456778888888888887766 445 45556666555566778888888888765210 0
Q ss_pred C---C-CchhHHHHHHHHhHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 391 I---K-PTTEICACVVDMLGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 391 ~---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
+ . ....+++.|..+|.+.+.+++|+..+++. . .+.+..++.+++..|...|+++.|.+.|.+++.+.|++..+-
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 0 1 13456788888999999999999999876 2 334777888899999999999999999999999999886666
Q ss_pred HHHHHHHH
Q 044812 465 VSLSNLYA 472 (547)
Q Consensus 465 ~~l~~~~~ 472 (547)
..|..+..
T Consensus 527 ~lL~~aie 534 (611)
T KOG1173|consen 527 ELLKLAIE 534 (611)
T ss_pred HHHHHHHH
Confidence 66655443
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1e-06 Score=83.19 Aligned_cols=437 Identities=12% Similarity=0.102 Sum_probs=253.3
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHH--HHHHH--HhcCChhH
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNS--LINGY--VKNHGHNE 104 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--ll~~~--~~~~~~~~ 104 (547)
.....+++++|.+....++..+ +-+...+.+=+-++.+.+.|++|+.+.+.-.... +++. +=.+| -+.+..++
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHH
Confidence 3444578899999999988887 5567788888888999999999997776654321 1222 23344 46899999
Q ss_pred HHHHHHHhhhCCCCCCc-chHHHHHHHHccCCCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHhccC
Q 044812 105 ALELFSNMYYSNVSPDD-FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVV-DVILANSLMSMYVKCGKFSECLNLFDEM 182 (547)
Q Consensus 105 A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 182 (547)
|+..++ |..++. .+...-.+.+.+.+++++|..+|+.+.+.+.+. +......++. .+-.-.+. +.+..
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a----~~a~l~~~-~~q~v 167 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA----VAAALQVQ-LLQSV 167 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH----HHHhhhHH-HHHhc
Confidence 999988 333333 366667788899999999999999998876431 1111111211 11111221 33333
Q ss_pred CCCChhhHHHHH---HHHHcCCCchhHHHHHHHH----hh-cCCCCh----------hhHHHHHHHHHHCCCHHHHHHHH
Q 044812 183 PQRNVGSWNVRI---SGHASSGDFSLVVRSRRVF----DQ-MKRRNV----------YAWTAMINGYVQNGDLDEALVLF 244 (547)
Q Consensus 183 ~~~~~~~~~~li---~~~~~~g~~~~a~~a~~~~----~~-~~~~~~----------~~~~~li~~~~~~~~~~~A~~~~ 244 (547)
......+|..+- -.+...|++.+|++.++-- .+ +...|. ..---|..++...|+.++|..+|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 332233444433 4566788888843333222 11 111111 11223556778899999999999
Q ss_pred HHchhcCCCCCChHH----HHhHHHHhhccCCch-hHHHHHHHHHHc-----------CCCCchhHHHHHHHHHHhcCCH
Q 044812 245 LEMQLKDRIEPNKVS----LVSVLPTCSSLIGLS-GGKQIHGFAIRK-----------ELNHDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 245 ~~m~~~~~~~p~~~~----~~~ll~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~ 308 (547)
... .+. .++|... .|.++..-....-++ .+...++..... ...-....-+.++..| .+..
T Consensus 248 ~~~-i~~-~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~ 323 (652)
T KOG2376|consen 248 VDI-IKR-NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKM 323 (652)
T ss_pred HHH-HHh-cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhH
Confidence 988 443 3444422 223332222111122 111111111110 0000111112223322 3455
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHH-HH-hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH---
Q 044812 309 DCARRVFEDSSFNKDAITWSSIVSG-YG-LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN--- 383 (547)
Q Consensus 309 ~~A~~~~~~~~~~~~~~~~~~li~~-~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--- 383 (547)
+.+.++....+..-....+.+++.. +. +.....++.+++...-+....-.....-..+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 6666666655422223344444443 32 223467777777777665222224455556667889999999999999
Q ss_pred -----HHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 044812 384 -----SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--------PVEPS-PSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 384 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
.+.+- +. .+.+...+...+.+.++-+.|..++.+. ...+. ..++..+...-.+.|+-++|..+
T Consensus 404 ~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 404 ESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44322 33 3445556777788777765555555443 22222 22444444555678999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
++++.+.+|++..+...++.+|++. +.+.|..+-+.
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999999999999876 45566665444
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=2.1e-09 Score=88.90 Aligned_cols=169 Identities=14% Similarity=0.168 Sum_probs=142.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHH
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDM 404 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 404 (547)
...|.-+|.+.|+...|..-+++.++. .| +..++..+...|.+.|..+.|.+.|++.... .| +..+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhHH
Confidence 555677899999999999999999886 44 4678888888899999999999999988743 45 67888888999
Q ss_pred hHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHH
Q 044812 405 LGRAGQLDRALDFIKTMPVEP----SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480 (547)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 480 (547)
+|..|++++|...|++.-..| -..+|..++.+..+.|+.+.|.+.|++.++.+|..+.....+.......|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999873333 2458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccCCccceE
Q 044812 481 AELRTMMKDRGLKKSPGCSWI 501 (547)
Q Consensus 481 ~~~~~~m~~~~~~~~~~~~~~ 501 (547)
...+++....+. ++...-|.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L 212 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLL 212 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHH
Confidence 999999887766 44444444
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=1e-06 Score=83.83 Aligned_cols=452 Identities=13% Similarity=0.145 Sum_probs=213.2
Q ss_pred HHHhccCchHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHH
Q 044812 29 VSATHRSLKLTKQSHSQILSLG-HISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 107 (547)
++...|++..-+..|+..+..- +......|...+......|-++.+.++++.-.+-++..-+-.|..+++.+++++|.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHH
Confidence 3334445555555555544431 233344566666666666777777777777666555556667777777777777777
Q ss_pred HHHHhhhCC------CCCCcchHHHHHHHHccCCCcHH---HHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHH
Q 044812 108 LFSNMYYSN------VSPDDFTLATISKLSGEIKDLNV---GMLIHGLSIKIGFVVD--VILANSLMSMYVKCGKFSECL 176 (547)
Q Consensus 108 ~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~ 176 (547)
.+....... .+.+...|.-+-...++..+.-. ...+++.++. .-+| ...|.+|.+.|.+.|+++.|.
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 777665321 11223334444333333322211 1122222221 1122 235667777777777777777
Q ss_pred HHhccCCCC--ChhhHHHHHHHHH----------------cCCCchh---HHHHHHHHhhcC---------------CCC
Q 044812 177 NLFDEMPQR--NVGSWNVRISGHA----------------SSGDFSL---VVRSRRVFDQMK---------------RRN 220 (547)
Q Consensus 177 ~~~~~~~~~--~~~~~~~li~~~~----------------~~g~~~~---a~~a~~~~~~~~---------------~~~ 220 (547)
.+|++..+. .+.-++.+.+.|. ..|+.+. .+-....|+.+. ..+
T Consensus 269 Dvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~n 348 (835)
T KOG2047|consen 269 DVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHN 348 (835)
T ss_pred HHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCcc
Confidence 777664431 1111111111111 1111110 011111111111 112
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC------hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCc---
Q 044812 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN------KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD--- 291 (547)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 291 (547)
+..|..-+. +..|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|++..+...+.-
T Consensus 349 V~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 349 VEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred HHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 222222221 2345555555556555222 2221 23455566666666666666666666665543322
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--------------------ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDSSFNK--------------------DAITWSSIVSGYGLHGKGHEAVLLYNKMV 351 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 351 (547)
..+|..-..+-.+..+++.|+++.++.-..| +...|...++..-..|-++....+|+++.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445555555556666666666665411011 11223333433334445555555555544
Q ss_pred HcCC----------------------------------CCCH-HHHHHHHHHHh---ccCcHHHHHHHHHHHHHhcCCCC
Q 044812 352 CLGS----------------------------------KPDI-ITIVGVLSACG---RSGLINEGLEIYNSVINTYRIKP 393 (547)
Q Consensus 352 ~~g~----------------------------------~p~~-~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~ 393 (547)
+..+ .|+. ..|+..+..+. ...+++.|..+|++..+ |.+|
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp 582 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPP 582 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCH
Confidence 4322 2221 12232222222 12346666777776665 4444
Q ss_pred ch--hHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc--hHH
Q 044812 394 TT--EICACVVDMLGRAGQLDRALDFIKTM--PVEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS--NYV 465 (547)
Q Consensus 394 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 465 (547)
.. ..|......-.+.|-...|+.++++. .+++. ...|+..++-....=-+.....+|+++++.-|++.. ...
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mcl 662 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCL 662 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHH
Confidence 22 12222222223446666666666665 22332 225555554333332334445566666665544322 233
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Q 044812 466 SLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
..+..-.+.|..+.|..++..-.
T Consensus 663 rFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 663 RFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHhhhhhhHHHHHHHHHhhh
Confidence 45556667788888888877643
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=2.1e-07 Score=90.66 Aligned_cols=429 Identities=13% Similarity=0.086 Sum_probs=243.7
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--CCcchHHHHHHHHH-h----
Q 044812 26 FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNSLINGYV-K---- 98 (547)
Q Consensus 26 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~-~---- 98 (547)
-..++...|++.+|.+.++.-.+. +.-...........+.+.|+.++|..+|..+.+ |+...|-..+..+. -
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 346677778888887777664433 333455666677777778888888888877764 54444444433333 1
Q ss_pred -cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcH-HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 044812 99 -NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN-VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176 (547)
Q Consensus 99 -~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 176 (547)
..+.+...++|+++...- |.......+.-.+.....+. .+..++..+...|++ .+|+.|-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 124566677777776543 44444444433333333332 444555566666643 34555555555444433333
Q ss_pred HHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCCh--hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCC
Q 044812 177 NLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV--YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254 (547)
Q Consensus 177 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 254 (547)
+++...... ....+.+.. . . -.....|.. .++..+...|...|++++|++++++. .. ..
T Consensus 164 ~l~~~~~~~-----------l~~~~~~~~---~-~-~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a-I~--ht 224 (517)
T PF12569_consen 164 SLVEEYVNS-----------LESNGSFSN---G-D-DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA-IE--HT 224 (517)
T ss_pred HHHHHHHHh-----------hcccCCCCC---c-c-ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-Hh--cC
Confidence 333332110 000000000 0 0 000012333 35567788999999999999999988 44 24
Q ss_pred CC-hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC------hh--
Q 044812 255 PN-KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD------AI-- 325 (547)
Q Consensus 255 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~-- 325 (547)
|+ ...|..-.+.+-+.|++.+|...++...... .-|..+-+..+..+.+.|++++|.+++.... +++ ..
T Consensus 225 Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft-r~~~~~~~~L~~m 302 (517)
T PF12569_consen 225 PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFT-REDVDPLSNLNDM 302 (517)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc-CCCCCcccCHHHH
Confidence 54 5678888899999999999999999998876 5577777888899999999999999887543 222 11
Q ss_pred --hH--HHHHHHHHhcCChHHHHHHHHHHHHc-------CC--------CCCHHHHHHHHHHHhccCc-------HHHHH
Q 044812 326 --TW--SSIVSGYGLHGKGHEAVLLYNKMVCL-------GS--------KPDIITIVGVLSACGRSGL-------INEGL 379 (547)
Q Consensus 326 --~~--~~li~~~~~~~~~~~a~~~~~~m~~~-------g~--------~p~~~~~~~l~~~~~~~g~-------~~~a~ 379 (547)
.| .....+|.+.|++..|+.-|....+. .+ +.+..+|..+++..-+... ...|.
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai 382 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAI 382 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 22 23457899999999988766655432 11 1222334444433221111 23345
Q ss_pred HHHHHHHHhcCCCCch-----------hHHHHHHHHh---HhcCCHHHHHHHHH-----------hC----C--CCCCHH
Q 044812 380 EIYNSVINTYRIKPTT-----------EICACVVDML---GRAGQLDRALDFIK-----------TM----P--VEPSPS 428 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~-----------~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~----~--~~p~~~ 428 (547)
+++-.+-......... .--..+..-. .+...-+++...-. +. + ..||+.
T Consensus 383 ~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~ 462 (517)
T PF12569_consen 383 RIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPL 462 (517)
T ss_pred HHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCcc
Confidence 5555443321100000 0000011000 11111111111110 00 1 112221
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 429 IWGALVSASVMH-GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 429 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
+.-+.+. .-.++|.++++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 463 -----GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 463 -----GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred -----HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 2222333 3578899999999999999999999999999999999998887754
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3.2e-09 Score=92.15 Aligned_cols=231 Identities=11% Similarity=0.091 Sum_probs=190.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (547)
-+-+..+|.+.|.+.+|.+.++.- .+ -.|-..||..+-+.|.+..+...|..++.+-.+.- +.++....-..+.+.
T Consensus 226 k~Q~gkCylrLgm~r~Aekqlqss-L~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSS-LT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHH-hh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 367889999999999999999877 44 35666788889999999999999999998877763 445555566788888
Q ss_pred hcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 044812 304 KCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381 (547)
Q Consensus 304 ~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 381 (547)
..++.++|.++|+.. .. ..++....++...|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|...++++-++.-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999873 21 345566677778899999999999999999999976 678899999999999999999999
Q ss_pred HHHHHHhcCCCCc--hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 382 YNSVINTYRIKPT--TEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 382 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
|++.... .-.|+ ..+|-.+.......|++.-|.+-|+-. ...| +...++.|.-.-.+.|+++.|..+++.+....
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9988654 33343 567888888889999999999999876 3334 56689999998999999999999999999988
Q ss_pred CCC
Q 044812 458 PEN 460 (547)
Q Consensus 458 ~~~ 460 (547)
|.-
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 863
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=7.1e-09 Score=104.42 Aligned_cols=212 Identities=12% Similarity=0.067 Sum_probs=163.5
Q ss_pred CCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCC
Q 044812 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK---------CGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGK 339 (547)
Q Consensus 271 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~ 339 (547)
+++++|...+++..+.. +.+...|..+..+|.. .+++++|...+++ +...| +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34678999999988775 3345566666655542 3458899999986 33344 56678888888999999
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHH
Q 044812 340 GHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 340 ~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
+++|...|++..+. .| +...+..+...+...|++++|...+++..+. .|+ ...+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999986 45 4667888888999999999999999999854 453 23333445556778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 418 IKTMP--VEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 418 ~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+++.. ..|+ ...+..+..++...|+.++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98872 2354 4457778888999999999999999988888887778888888888888 4888888877643
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=9.8e-09 Score=94.53 Aligned_cols=190 Identities=15% Similarity=0.084 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 044812 293 SLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSAC 369 (547)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~ 369 (547)
..|..+...|...|+.++|...|++ +...| +...|+.+...+...|++++|...|++..+. .|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3455556666666666666666654 22233 3455666666666777777777776666653 343 45555666666
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
...|++++|.+.|+...+. .|+..........+...++.++|...|++. ...|+...+ .......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH-
Confidence 6667777777776666543 232211111112233455666776666543 112222111 1222234444332
Q ss_pred HHHHHHH-------hhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 448 LAYKSLI-------QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 448 ~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+.++.+. +..|..+.+|..++..+.+.|++++|...|++..+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333332 2334455567777777777777777777777666544
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.13 E-value=9.4e-06 Score=77.59 Aligned_cols=408 Identities=11% Similarity=0.113 Sum_probs=244.0
Q ss_pred hhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHh
Q 044812 72 TQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI 150 (547)
Q Consensus 72 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 150 (547)
+.++....+|+ ..|-.-+..+.++|+.......|+..+.. -+......|...+......+-.+.+.++++..++.
T Consensus 92 er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 92 ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 44444444444 45777788888999999999999887653 44556677888999989999999999999998764
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC----------ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC-
Q 044812 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR----------NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR- 219 (547)
Q Consensus 151 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~- 219 (547)
++..-+..+..+++.+++++|-+.+...... +...|..+-....+.-+.-.......+++.+...
T Consensus 168 ----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 ----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred ----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 3334677788899999999999999888753 2234555555555544433333344555555442
Q ss_pred -C--hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhc----------------cC------Cch
Q 044812 220 -N--VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS----------------LI------GLS 274 (547)
Q Consensus 220 -~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----------------~~------~~~ 274 (547)
| ...|++|+..|.+.|++++|..+|++. ... ..+..-|..+..+|.. .+ +++
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeea-i~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEA-IQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 2 357999999999999999999999987 332 1222223333333321 11 122
Q ss_pred hHHHHHHHHHHcCC-----------CCchhHHHHHHHHHHhcCCHHHHHHHHhcC--CCCC------ChhhHHHHHHHHH
Q 044812 275 GGKQIHGFAIRKEL-----------NHDVSLCNALIDMYSKCGSLDCARRVFEDS--SFNK------DAITWSSIVSGYG 335 (547)
Q Consensus 275 ~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~------~~~~~~~li~~~~ 335 (547)
....-|+.+...+. +.++..|..-+.. ..|+..+-...|.+. .+.| -...|..+...|-
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 22333333333220 1122222222222 234445555555431 1111 1234777778888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC----------CC------chh
Q 044812 336 LHGKGHEAVLLYNKMVCLGSKPD---IITIVGVLSACGRSGLINEGLEIYNSVINTYRI----------KP------TTE 396 (547)
Q Consensus 336 ~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~------~~~ 396 (547)
..|+.+.|..+|++..+...+-- ..+|..-...=.+..+++.|.++.+....-... ++ +..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 88888888888888776533211 223333334444566777777777766432000 00 123
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC----CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCchHHHHHH
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM----PVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQLE--PENPSNYVSLSN 469 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~ 469 (547)
.|...++.....|-++....+++++ ...|... .|..+ +-.+.-++++.+++++-+.+- |.-...|+..+.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 3555566666677777777777776 2334433 23322 345566788888888877764 333345555554
Q ss_pred HHHc---CCCHHHHHHHHHHHHhCCCccCC
Q 044812 470 LYAS---SRRWDAVAELRTMMKDRGLKKSP 496 (547)
Q Consensus 470 ~~~~---~g~~~~A~~~~~~m~~~~~~~~~ 496 (547)
-+.+ ..+.+.|..+|+...+ |.+|.-
T Consensus 556 kfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 4433 2468888888888887 655443
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=5.6e-08 Score=94.65 Aligned_cols=270 Identities=10% Similarity=0.070 Sum_probs=190.4
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC-- 305 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 305 (547)
...+...|++++|++.+..- ...+......+......+.+.|+.++|..++..+++.+ +.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~--~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKN--EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhh--hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 45567889999999999765 22244445556677788889999999999999999887 45555566666665332
Q ss_pred ---CCHHHHHHHHhcCC-CCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 044812 306 ---GSLDCARRVFEDSS-FNKDAITWSSIVSGYGLHGKGH-EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380 (547)
Q Consensus 306 ---g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 380 (547)
.+.+...++|+++. .-|.......+.-.+.....+. .+..++..+...|+++ +|..|-..|....+..-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 24677777777643 1233333333322222222333 4556777888888764 55556555666666666666
Q ss_pred HHHHHHHhc-------------CCCCchh--HHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCH
Q 044812 381 IYNSVINTY-------------RIKPTTE--ICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNS 443 (547)
Q Consensus 381 ~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 443 (547)
++....... .-+|+.. ++..+...|-..|++++|++++++. ...|+ +..|..-.+.+.+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 666654321 0123332 4466788899999999999999976 56786 45888899999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCC-----ccceEee
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP-----GCSWISI 503 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~~~ 503 (547)
.+|.+.++.+.++++.|..+-...+..+.+.|+.++|.+++..+-+.+..|.. .+.|+.+
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 99999999999999999988889999999999999999999999877763332 3456655
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=5.8e-07 Score=87.42 Aligned_cols=425 Identities=12% Similarity=0.063 Sum_probs=268.2
Q ss_pred CCcchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC----CC-cchHHHH
Q 044812 18 YTSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH----KD-VYLYNSL 92 (547)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~l 92 (547)
.++..+.++.-++..||++..+.+.|++....- .-....|+.+--.|...|.-..|..+.+.-.. |+ ...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 355568999999999999999999999987764 34677888999999999999999999987654 22 2233333
Q ss_pred HHHHHh-cCChhHHHHHHHHhhhC--CC--CCCcchHHHHHHHHccC-----------CCcHHHHHHHHHHHHhCCCCch
Q 044812 93 INGYVK-NHGHNEALELFSNMYYS--NV--SPDDFTLATISKLSGEI-----------KDLNVGMLIHGLSIKIGFVVDV 156 (547)
Q Consensus 93 l~~~~~-~~~~~~A~~~~~~m~~~--~~--~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~ 156 (547)
-..|.+ -+..++++++-.+.... +. ...+..|..+.-+|... ....++.+.++..++.+. .|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CCc
Confidence 334443 36667777666666551 11 12344555555554322 123466777888877663 244
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC----CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC---ChhhHHHHHH
Q 044812 157 ILANSLMSMYVKCGKFSECLNLFDEMPQ----RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR---NVYAWTAMIN 229 (547)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~---~~~~~~~li~ 229 (547)
.+...+.--|+..++++.|.....+..+ .+...|..+...+...+++.. |+.+.+..... |......-+.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~---Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE---ALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH---HHHHHHHHHHHhhhhhhhchhhhh
Confidence 4434455567888999999888777654 467789999999999999888 55555443322 2222222334
Q ss_pred HHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHH--cCCCCchhHHHHHHHHHHhcCC
Q 044812 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR--KELNHDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 230 ~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~ 307 (547)
.-...++.++++.....+..-..-.+.. ...++-....+....+.- ....-...++..+.......+.
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 4455788888888877662110000000 011111111111111100 0011122333333322221111
Q ss_pred ---HHHHHHHHhcCCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 308 ---LDCARRVFEDSSFNKDA------ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 308 ---~~~A~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
.+..+..+.... .|+. ..|......+.+.++.++|...+.+.... .+-....|......+...|+.++|
T Consensus 626 ~~~se~~Lp~s~~~~-~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLP-GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred hcccccccCcccccC-CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHH
Confidence 111111111111 2331 23556667888899999998888887664 233456677777788889999999
Q ss_pred HHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 379 LEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALD--FIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
.+.|.... -+.| ++....++..++.+.|+..-|.. ++..+ ...| +...|..++..+.+.|+.+.|.+.|+.+
T Consensus 704 ~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 704 KEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99998776 4466 57788899999999998877777 88776 5556 5779999999999999999999999999
Q ss_pred HhhCCCCCc
Q 044812 454 IQLEPENPS 462 (547)
Q Consensus 454 ~~~~~~~~~ 462 (547)
.++++.+|.
T Consensus 781 ~qLe~S~PV 789 (799)
T KOG4162|consen 781 LQLEESNPV 789 (799)
T ss_pred HhhccCCCc
Confidence 999866553
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=9.1e-08 Score=88.14 Aligned_cols=230 Identities=10% Similarity=-0.038 Sum_probs=154.5
Q ss_pred CCCHHHHHHHHHHchhcCCCCCC--hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044812 234 NGDLDEALVLFLEMQLKDRIEPN--KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311 (547)
Q Consensus 234 ~~~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 311 (547)
.+..+.++.-+.++.......|+ ...|......+...|+.+.|...|+...+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34566677777666333333333 2456666777888888888888888888765 45678899999999999999999
Q ss_pred HHHHhc-CCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 044812 312 RRVFED-SSFNKD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389 (547)
Q Consensus 312 ~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 389 (547)
...|++ +.+.|+ ...|..+...+...|++++|.+.|++..+. .|+..........+...++.++|.+.|++....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999987 333454 567888888899999999999999999885 454332222222345567899999999776543
Q ss_pred CCCCchhHHHHHHHHhHhcCCHH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Q 044812 390 RIKPTTEICACVVDMLGRAGQLD--RALDFIKTM-PV----EP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN- 460 (547)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 460 (547)
..|+...+ .+... ..|+.. ++.+.+.+. .. .| ....|..++..+...|++++|+..|+++++.+|++
T Consensus 195 -~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23333222 23332 344443 333333322 11 12 23578999999999999999999999999999754
Q ss_pred CchHHHHHHHH
Q 044812 461 PSNYVSLSNLY 471 (547)
Q Consensus 461 ~~~~~~l~~~~ 471 (547)
...-..++...
T Consensus 271 ~e~~~~~~e~~ 281 (296)
T PRK11189 271 VEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHH
Confidence 33333344433
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.8e-07 Score=79.87 Aligned_cols=228 Identities=10% Similarity=0.032 Sum_probs=165.3
Q ss_pred HHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 044812 230 GYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLD 309 (547)
Q Consensus 230 ~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 309 (547)
.+.+.|+++....+...+... ..-+...|..-...+...++++.|..+-++.++.+ +.+...+-.-..++...|+.+
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence 345667777777666665211 11222233333344455667777777777776654 344555655667788889999
Q ss_pred HHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHH
Q 044812 310 CARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL-SACG-RSGLINEGLEIYNSV 385 (547)
Q Consensus 310 ~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~ 385 (547)
+|.-.|+.. .. +-+..+|.-|+.+|...|++.+|.-.-+...+. +..+..+.+.+. ..|. ...--++|..++++.
T Consensus 352 ~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 999999762 22 346788999999999999999998877766554 344566666663 3333 334457888888877
Q ss_pred HHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 386 INTYRIKPT-TEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 386 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
. .+.|+ ....+.+...+...|..+++..++++. ...||....+.|...+...+.+++|...|..+++.+|.+..+
T Consensus 431 L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 431 L---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred h---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 6 44564 566778889999999999999999986 678999999999999999999999999999999999988654
Q ss_pred H
Q 044812 464 Y 464 (547)
Q Consensus 464 ~ 464 (547)
.
T Consensus 508 l 508 (564)
T KOG1174|consen 508 L 508 (564)
T ss_pred H
Confidence 4
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=9.2e-07 Score=76.26 Aligned_cols=386 Identities=10% Similarity=0.060 Sum_probs=217.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHH-HHHHHH
Q 044812 89 YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANS-LMSMYV 167 (547)
Q Consensus 89 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~ 167 (547)
+++.+..+.+..++..|++++....++..+ +....+.+..+|....++..|-..++++-..- |...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 344555556666666666666666554321 44555666666666666666666666654432 22222211 123445
Q ss_pred hcCChHHHHHHhccCCCC-ChhhHHHHH--HHHHcCCCchhHHHHHHHHhhcC-CCChhhHHHHHHHHHHCCCHHHHHHH
Q 044812 168 KCGKFSECLNLFDEMPQR-NVGSWNVRI--SGHASSGDFSLVVRSRRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVL 243 (547)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~-~~~~~~~li--~~~~~~g~~~~a~~a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~ 243 (547)
+.+.+..|+++...|... +...-..-+ .+....+++.. +..+.+..+ +.+..+.+.......+.|+++.|++-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g---~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPG---SRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcc---hHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 566667777776666553 211111111 22334555555 666666666 35666666667777788888888888
Q ss_pred HHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCC-------------c---------------hhHH
Q 044812 244 FLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH-------------D---------------VSLC 295 (547)
Q Consensus 244 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~ 295 (547)
|+...+-.|.+|- ..|+.- -+..+.++++.|.+...+++++|++. | ...+
T Consensus 167 FqaAlqvsGyqpl-lAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 167 FQAALQVSGYQPL-LAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHhhcCCCch-hHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 8887555666654 334433 35566788888888888888776531 1 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 296 NALIDMYSKCGSLDCARRVFEDSSF----NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 296 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
|.-...+.+.|+++.|.+.+-+|+- ..|++|...+.-.- ..+++....+-+.-+..... -...||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 3334445678899999999888762 13556654443221 23445555555565655533 346789999999999
Q ss_pred cCcHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHhHh-cCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCC---HH
Q 044812 372 SGLINEGLEIYNSVINTYRIK-PTTEICACVVDMLGR-AGQLDRALDFIKTMPVEP--SPSIWGALVSASVMHGN---SE 444 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~---~~ 444 (547)
..-++.|..++-+-... ..+ .+...|+ |++++.. .-..++|++-++.+...- .......-+.--...++ ..
T Consensus 323 Neyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R 400 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIR 400 (459)
T ss_pred hHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 99888888886643211 111 1333443 3344433 346677766665541000 00011111111111111 23
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+++-+++.+++-- .+....++.|.+..++..+.++|+.-.+
T Consensus 401 ~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 401 KAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 34444555555431 1456677888999999999999987544
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.08 E-value=9.3e-07 Score=84.34 Aligned_cols=386 Identities=12% Similarity=0.091 Sum_probs=223.0
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 044812 98 KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLN 177 (547)
Q Consensus 98 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 177 (547)
..+++.+.++..+.+.+. ..-...|.....-.+...|+-++|....+...+.+ ..+.+.|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 334555555555555542 22223333333334445566666666655555543 2244555555555555666666666
Q ss_pred HhccCCC---CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCC
Q 044812 178 LFDEMPQ---RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254 (547)
Q Consensus 178 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 254 (547)
.|..... .|...|..+.-.-...++++........+-+........|..++.++.-.|++..|..+++.........
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6665432 2344444444444444555544334444444445566788999999999999999999999984333345
Q ss_pred CChHHHHhHHH------HhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCChhhH
Q 044812 255 PNKVSLVSVLP------TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAITW 327 (547)
Q Consensus 255 p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 327 (547)
|+...+..... .....|..+.|.+.+..-...- ......-..-...+.+.+++++|..++..+ ...||...|
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 66665544433 3456677777777665543321 112223345567788999999999999874 235777666
Q ss_pred HHHH-HHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044812 328 SSIV-SGYGLHGKGHEAV-LLYNKMVCLGSKPDIITIVGV-LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404 (547)
Q Consensus 328 ~~li-~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (547)
.... .++.+..+.-+++ .+|....+. .|....-..+ +.......-.+....++....++ |+++-... +...
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~vf~d---l~SL 329 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSVFKD---LRSL 329 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCchhhh---hHHH
Confidence 6555 4443333333444 566655543 2221111111 11111222233344455555555 66543322 3333
Q ss_pred hHhcCCHH----HHHHHHHhC-C------------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 405 LGRAGQLD----RALDFIKTM-P------------VEPSPSIW--GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 405 ~~~~g~~~----~A~~~~~~~-~------------~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
|-.-...+ -+..+...+ + ..|....| ..+...+-..|+++.|...++.++..-|.-+..|.
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~ 409 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYL 409 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHH
Confidence 32211111 111122212 1 24555544 55677788999999999999999999998888898
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 466 SLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
.=++++...|+.++|..++++.++.+.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 999999999999999999999877654
No 83
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.4e-06 Score=86.98 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=112.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 324 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
+..|+.+..+-.+.|...+|.+-|-+. -|+..|.-+++.+.+.|.+++-.+++.-.+++ .-.|.+. +.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 456888888888888888888776543 35678999999999999999999999877655 4455544 47899
Q ss_pred HhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
+|++.+++.+.++++. -|+..-...++.-|...|.++.|.-+|.. .+.|..|+..+...|.++.|.+.
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988777653 47777788888999999999988888775 34588888888888888887765
Q ss_pred HHH
Q 044812 484 RTM 486 (547)
Q Consensus 484 ~~~ 486 (547)
-++
T Consensus 1243 aRK 1245 (1666)
T KOG0985|consen 1243 ARK 1245 (1666)
T ss_pred hhh
Confidence 554
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1.7e-06 Score=76.40 Aligned_cols=52 Identities=6% Similarity=-0.029 Sum_probs=40.2
Q ss_pred HhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC
Q 044812 31 ATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH 83 (547)
Q Consensus 31 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 83 (547)
..-|++.+|..+++-+.+.. .++...+-.|.-.+.-.|.+.+|..+-.+.++
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k 119 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK 119 (557)
T ss_pred HhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC
Confidence 33489999999999988855 66677777777666677999999988777653
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.02 E-value=8.1e-07 Score=85.75 Aligned_cols=219 Identities=16% Similarity=0.266 Sum_probs=137.4
Q ss_pred HHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044812 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 308 (547)
..+...|+++.|+.-|-+. . .....+.+......+.+|..+++.+.+... ...-|..+.+.|...|++
T Consensus 714 ~hl~~~~q~daainhfiea-~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEA-N---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHh-h---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 3445556666666666544 1 122334455666777778777777766542 223466677788888888
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 044812 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388 (547)
Q Consensus 309 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 388 (547)
+.|.++|-+-+ .++--|..|.+.|+++.|.++-.+.. |.......|..-..-+...|++.+|+++|-.+.
T Consensus 782 e~ae~lf~e~~------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-- 851 (1636)
T KOG3616|consen 782 EIAEELFTEAD------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-- 851 (1636)
T ss_pred HHHHHHHHhcc------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc--
Confidence 88888887655 24445677888888888877765542 233344455555555677788888877765442
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 389 YRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
.|+. -|.+|-+.|..++.+++.++-.-..-..|...+..-+-..|+.+.|+..|-++- -|..-+
T Consensus 852 ---~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaav 915 (1636)
T KOG3616|consen 852 ---EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAV 915 (1636)
T ss_pred ---CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHH
Confidence 2432 456777888888888887776322233466667777777788877777665532 255555
Q ss_pred HHHHcCCCHHHHHHHHH
Q 044812 469 NLYASSRRWDAVAELRT 485 (547)
Q Consensus 469 ~~~~~~g~~~~A~~~~~ 485 (547)
++|...+.|++|-++-+
T Consensus 916 nmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 916 NMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhhhhhhHHHHHHHHh
Confidence 66666666666655544
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=4.2e-07 Score=75.59 Aligned_cols=168 Identities=12% Similarity=0.060 Sum_probs=90.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLS 367 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~ 367 (547)
+..++..+...|.+.|+.+.|.+.|++ +.+.| +-...|.....+|..|++++|...|++....-.-| -..||..+.-
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 344555555556666666666666654 22222 33445555555666666666666666655532111 1345555555
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~ 444 (547)
+..+.|+.+.|...|++..+. .| .......+.....+.|++..|..+++.. ...++..++-..+..-...||..
T Consensus 148 Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH
Confidence 556666666666666655543 22 3344445555556666666666666554 22355555555555555666666
Q ss_pred HHHHHHHHHHhhCCCCC
Q 044812 445 MQDLAYKSLIQLEPENP 461 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~ 461 (547)
.+-+.=.++.+.-|.++
T Consensus 225 ~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 225 AAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHHHhCCCcH
Confidence 66655555555555443
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=1.6e-06 Score=76.39 Aligned_cols=295 Identities=14% Similarity=0.087 Sum_probs=183.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHH---HHHcCCCchhHHHHHHHHhhcCCCChhhHHH---HHHH
Q 044812 157 ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRIS---GHASSGDFSLVVRSRRVFDQMKRRNVYAWTA---MING 230 (547)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~---li~~ 230 (547)
.-.--+...+...|++..|+.-|....+-|+..|..+.+ .|...|+... |+.-+.+..+..+..+.+ -...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~---al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKA---ALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCcc---chhhHHHHHhcCccHHHHHHHhchh
Confidence 333445666777788888888888887777776666543 5666666655 333333333222222222 2356
Q ss_pred HHHCCCHHHHHHHHHHchhcCCCCCC------------h--HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHH
Q 044812 231 YVQNGDLDEALVLFLEMQLKDRIEPN------------K--VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN 296 (547)
Q Consensus 231 ~~~~~~~~~A~~~~~~m~~~~~~~p~------------~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 296 (547)
+.+.|.++.|..=|+.. .+.....+ . ......+..+...|+...|......+.+.. +.+...+.
T Consensus 116 llK~Gele~A~~DF~~v-l~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQV-LQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhcccHHHHHHHHHHH-HhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 78899999999988887 44322111 0 112334456677888888888888888875 66788888
Q ss_pred HHHHHHHhcCCHHHHHHHHhc---CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHHH---
Q 044812 297 ALIDMYSKCGSLDCARRVFED---SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT----IVGVL--- 366 (547)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~l~--- 366 (547)
.-..+|...|++..|+.-++. +. ..+.....-+-..+...|+.+.++...++-++ +.||... |..|-
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHH
Confidence 888889999999988877765 33 45566666777778888888888888888776 4666432 11110
Q ss_pred ------HHHhccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 044812 367 ------SACGRSGLINEGLEIYNSVINTYRIKPT-----TEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGAL 433 (547)
Q Consensus 367 ------~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 433 (547)
......+.+.++.+-.+...+. .|. ...+..+-.++...|++-+|++...+. .+.|+ ..++.-=
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 1123445555666555555543 222 223334445555666777776666654 44454 4466666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
..+|.-...++.|+.-|+.+.+.++.|..
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 66666666777777777777777666543
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=2.6e-08 Score=90.28 Aligned_cols=227 Identities=13% Similarity=0.114 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC-CchhHHHHHHH
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-HDVSLCNALID 300 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 300 (547)
.....+.+++...|+++.++. ++ ... -.|.......+...+...++.+.+..-++........ .+..+......
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl~---ei-~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVLS---EI-KKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHH---HS--TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHH---Hh-ccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 344556778888888776543 33 232 2666666655555554444444444444433333322 23333333445
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHH
Q 044812 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR----SGLIN 376 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~ 376 (547)
++...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+++.
T Consensus 111 i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence 566788899888888765 34566667778888899999999999888774 333 444445554332 34688
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNS-EMQDLAYKSL 453 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 453 (547)
+|..+|+++..+ ..+++.+.+.+..+....|++++|.+++++. ...| ++.++..++.+....|+. +.+.+.+.++
T Consensus 185 ~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888888653 4567778888888888888888888888775 3334 445777777777777776 6677788888
Q ss_pred HhhCCCCC
Q 044812 454 IQLEPENP 461 (547)
Q Consensus 454 ~~~~~~~~ 461 (547)
....|.++
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 87777654
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=2.3e-08 Score=93.76 Aligned_cols=216 Identities=14% Similarity=0.129 Sum_probs=170.3
Q ss_pred hhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHH
Q 044812 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAV 344 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~ 344 (547)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++ ..+.| |....-.|...|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456777888888888877775 55677888888888888888888877776 33444 5567778888899999888999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-----------HHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHH
Q 044812 345 LLYNKMVCLGSKPDIITIVGVL-----------SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413 (547)
Q Consensus 345 ~~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (547)
..++.-+....+ |..+. ..+.....+....++|-++....+..+|+.++..|.-.|--.|.+++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888877654211 00010 12233334556677777777766766888999999999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 414 ALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 414 A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
|.+-|+.. .++|+ ..+||.|+..++...+.++|+..|.+++++.|.-..+...|+..|...|.|++|.+.|=...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999986 67775 56999999999999999999999999999999999999999999999999999999877654
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=1.9e-08 Score=91.12 Aligned_cols=247 Identities=10% Similarity=0.054 Sum_probs=168.4
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (547)
++-+.-.|++..++.-.+ . ....-..+......+.+++...|+.+.+. ..+.+.. .|.......+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-L-KSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-C-HTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-c-cCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence 345566788998887665 4 33222233455667778888888876543 3333333 6666666666655554456
Q ss_pred HHHHHHHHhcCCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044812 308 LDCARRVFEDSSFNK----DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383 (547)
Q Consensus 308 ~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 383 (547)
-+.+..-+++.-..+ +..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 667766665421122 2222222335577789999999887642 356777788899999999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHhH----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 384 SVINTYRIKPTTEICACVVDMLG----RAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
.|.+ +..|. +...++.++. -.+.+.+|..+|+++ ...+++.+++.+..++...|++++|.++++++.+.+
T Consensus 156 ~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9963 34443 3333444443 234799999999998 345788899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCCH-HHHHHHHHHHHhC
Q 044812 458 PENPSNYVSLSNLYASSRRW-DAVAELRTMMKDR 490 (547)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 490 (547)
|.++.+...++-+....|+. +.+.+++..++..
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999988 6788888887754
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=4.7e-06 Score=81.67 Aligned_cols=375 Identities=11% Similarity=0.098 Sum_probs=215.7
Q ss_pred ChhHHHHHHH--HHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhC-CC--------CCCcc
Q 044812 54 NPFVSTKLIT--AYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NV--------SPDDF 122 (547)
Q Consensus 54 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~--------~p~~~ 122 (547)
|+.+-.++++ .|..-|+.|.|.+-.+.++.. ..|..+.+.|.+.++.+-|.-.+-.|... |. .|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4555566655 356668888887777666543 45888888888888888777666666432 11 122 2
Q ss_pred hHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC-hhhHHHHHHHHHcCC
Q 044812 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRN-VGSWNVRISGHASSG 201 (547)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g 201 (547)
+=.-+.......|-+++|+.+|++.++.+ .|=..|-..|++++|.++-+.-.+-. ..+|......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 22223333445677777777777766532 23345566777777777655432211 113333333333344
Q ss_pred CchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHH
Q 044812 202 DFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281 (547)
Q Consensus 202 ~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 281 (547)
+.+. |++.|++...+--..+..|. .++.....+.+.+ .|...|.....-+...|+.+.|+.+|.
T Consensus 873 Di~~---AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~-------~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 873 DIEA---ALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK-------RDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred cHHH---HHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc-------cchHHHHHHHHHHhcccchHHHHHHHH
Confidence 4443 44444443322211121111 1111112222222 234556666666677888888888887
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 044812 282 FAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361 (547)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 361 (547)
.+.+ |-++++..|-.|+.++|-++-++.| |......|.+.|-..|++.+|..+|.+...
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa--------- 995 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA--------- 995 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------
Confidence 6654 5567778888899999988888776 566677788899999999999998887643
Q ss_pred HHHHHHHH---------------hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-----
Q 044812 362 IVGVLSAC---------------GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM----- 421 (547)
Q Consensus 362 ~~~l~~~~---------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 421 (547)
|...|+.| ....+.-.|.++|++. |.. ...-+..|-+.|.+.+|+++--+-
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 22222222 1222333444555533 211 112345677788887777763221
Q ss_pred --------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------------C-CC---------CCc
Q 044812 422 --------PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL---------------------E-PE---------NPS 462 (547)
Q Consensus 422 --------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-~~---------~~~ 462 (547)
....|+...+--..-+....++++|..++-.+.+. . |. ...
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~ 1146 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQ 1146 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHH
Confidence 12235566666666666777777777665443321 1 11 022
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
....++..+.++|.+..|.+-|..
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1147 VLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHhccchHHHHHHHhh
Confidence 677889999999998888776654
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=1.6e-05 Score=86.37 Aligned_cols=325 Identities=12% Similarity=0.025 Sum_probs=196.4
Q ss_pred HHhcCChHHHHHHhccCCC----CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC-C------CC--hhhHHHHHHHHH
Q 044812 166 YVKCGKFSECLNLFDEMPQ----RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK-R------RN--VYAWTAMINGYV 232 (547)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~-~------~~--~~~~~~li~~~~ 232 (547)
....|+++.+...++.+.. .+..........+...|+++++........... . +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4455666666666665531 122222233334456666666443333222211 1 01 112223345567
Q ss_pred HCCCHHHHHHHHHHchhcCCCCCCh----HHHHhHHHHhhccCCchhHHHHHHHHHHcCC---CC--chhHHHHHHHHHH
Q 044812 233 QNGDLDEALVLFLEMQLKDRIEPNK----VSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL---NH--DVSLCNALIDMYS 303 (547)
Q Consensus 233 ~~~~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 303 (547)
..|++++|...++.. .......+. ...+.+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 464 ~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELA-LAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 889999999999886 332111121 2345555667788999999988888765321 11 1234556677788
Q ss_pred hcCCHHHHHHHHhc-------CCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHH
Q 044812 304 KCGSLDCARRVFED-------SSFN--K-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCL--GSKPD--IITIVGVLSAC 369 (547)
Q Consensus 304 ~~g~~~~A~~~~~~-------~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~l~~~~ 369 (547)
..|+++.|...+++ .+.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999888764 2211 1 1223445566677789999999988887553 11122 33444556677
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHH-----HHHHHHhHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHH
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKPTTEIC-----ACVVDMLGRAGQLDRALDFIKTMPV-E-PSP----SIWGALVSASV 438 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~ 438 (547)
...|+.+.|.+.+...............+ ...+..+...|+.+.|..++..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88899999999888875421111111111 1122445568899999999877621 1 111 12455677788
Q ss_pred HcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 439 MHGNSEMQDLAYKSLIQLE------PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
..|+.++|...++++.+.. +....+...++.++.+.|+.++|.+.+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999988752 1123366778889999999999999999887644
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.91 E-value=8.5e-06 Score=78.06 Aligned_cols=260 Identities=14% Similarity=0.011 Sum_probs=159.7
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhh----ccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS----SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (547)
...+...|++++|.+.+++. ... .+.+...+.. ...+. ..+....+.+.+.. .....+........+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~-l~~-~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQL-LDD-YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHH-CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHH
Confidence 45567889999999999887 332 2223333332 22222 23444555554443 11111223344456677888
Q ss_pred hcCCHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCcHHHH
Q 044812 304 KCGSLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDI--ITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 304 ~~g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~a 378 (547)
..|++++|...+++ ... +.+...+..+...|...|++++|..++++...... .|+. ..|..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999987 222 34456678888899999999999999998877532 2232 3455677888999999999
Q ss_pred HHHHHHHHHhcCCCCchhHH-H--HHHHHhHhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044812 379 LEIYNSVINTYRIKPTTEIC-A--CVVDMLGRAGQLDRALDF---IKT---M-PVEPSPSIWGALVSASVMHGNSEMQDL 448 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 448 (547)
..++++........+..... + .++..+...|....+.++ ... . +.............++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 99999875431111222111 1 223333444433333222 111 1 111112222356677788999999999
Q ss_pred HHHHHHhhCCC---------CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 449 AYKSLIQLEPE---------NPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 449 ~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+++.+...... ........+.++...|++++|.+.+......+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99998764311 23344566677789999999999999887554
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.4e-05 Score=80.22 Aligned_cols=358 Identities=13% Similarity=0.137 Sum_probs=187.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 044812 84 KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNV-SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL 162 (547)
Q Consensus 84 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 162 (547)
.|+..-+..+.++...+-+.+-+++++++.-.+. -........|+-.-+-.-+..++.++.+++-..+ .| .+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-ch------hH
Confidence 3555566677888888888888888888763211 1111112222222223334445555555543322 11 23
Q ss_pred HHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHH
Q 044812 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALV 242 (547)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 242 (547)
.......+-+++|..+|+...- +....+.||.-. ++.+. |.+..++..+| ..|..+..+-.+.|...+|++
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-n~~A~~VLie~i---~~ldR---A~efAe~~n~p--~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-NVSAIQVLIENI---GSLDR---AYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHHHHh---hhHHH---HHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHH
Confidence 3444555666777777765432 222233333222 22222 44555544433 346677777777777777777
Q ss_pred HHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 044812 243 LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK 322 (547)
Q Consensus 243 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 322 (547)
-|-+. -|+..|.-++..+.+.|.+++-.+++...++..-.|.. -+.|+-+|++.+++.+..+++. .|
T Consensus 1126 Syika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gp 1192 (1666)
T KOG0985|consen 1126 SYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA----GP 1192 (1666)
T ss_pred HHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc----CC
Confidence 66444 24456677777777777777777777766666544443 3456667777777666665553 23
Q ss_pred Chhh--------------------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044812 323 DAIT--------------------------WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376 (547)
Q Consensus 323 ~~~~--------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 376 (547)
|... |..|...+...|++..|.+.-++. .+..||..+-.+|...+.+.
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhh
Confidence 3333 444444444455555444433321 23455666655665554443
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
-| ++.-- ++.....-..-++..|...|-+++-..+++.. +.+ .....|+.|.-.|.+- ++++..+.++-..
T Consensus 1267 lA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1267 LA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFW 1339 (1666)
T ss_pred HH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 32 12110 12223444556677777777777777777654 332 2344555555555443 4444444444433
Q ss_pred hhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 455 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
..- ..-.+++++..+..|.+..-++.+-.
T Consensus 1340 sRv-----NipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1340 SRV-----NIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred Hhc-----chHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 211 11235666666677777766665543
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.89 E-value=1.5e-05 Score=77.27 Aligned_cols=342 Identities=12% Similarity=0.093 Sum_probs=207.4
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 044812 96 YVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175 (547)
Q Consensus 96 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 175 (547)
....+.|.+|+.+++.+..... -..-|..+...|+..|+++.|.++|-+. ..++..|..|.+.|+|..|
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 3456678888888887776532 3445777888999999999999888543 2356678889999999999
Q ss_pred HHHhccCCCCCh--hhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCC
Q 044812 176 LNLFDEMPQRNV--GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRI 253 (547)
Q Consensus 176 ~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 253 (547)
.++-++...|.. ..|-.-..-+-+.|++.+ |.+++-.+..|+. .|..|-+.|..+..+++..+- ..
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~e---aeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-h~--- 878 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAE---AEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-HG--- 878 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhh---hhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-Ch---
Confidence 999888877643 345555566777888877 7778877777764 477888999999988888654 11
Q ss_pred CCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhh-----HH
Q 044812 254 EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT-----WS 328 (547)
Q Consensus 254 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~ 328 (547)
..-..|...+..-+...|++..|..-|-+.. -|.+-+++|..++-+++|.++-+.-| ..|..- |.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwa 948 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWA 948 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHH
Confidence 1123455666777788888888887765432 36667788888888888888876544 222211 11
Q ss_pred H-------------------HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 044812 329 S-------------------IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389 (547)
Q Consensus 329 ~-------------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 389 (547)
. -+..-+..+-++-|.++-+-..+.. .|. ....+..-+...|++++|-+.+-+.++-.
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 1 1112233344444444433333221 122 12223334567888999888777666431
Q ss_pred CCCCchhHHHH-------------------HHHHhHhcCCHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHH
Q 044812 390 RIKPTTEICAC-------------------VVDMLGRAGQLDRALDFIKTMPVEPSP--SIWGALVSASVMHGNSEMQDL 448 (547)
Q Consensus 390 ~~~~~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~ 448 (547)
. -..+|.. -+.++.+..++..|.++-+.- .|+. ..+..-.++....|++.+|+.
T Consensus 1026 t---ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h--~~~~l~dv~tgqar~aiee~d~~kae~ 1100 (1636)
T KOG3616|consen 1026 T---YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH--CEDLLADVLTGQARGAIEEGDFLKAEG 1100 (1636)
T ss_pred c---ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh--ChhhhHHHHhhhhhccccccchhhhhh
Confidence 1 1111111 122333334444444433322 2332 244444455556777777776
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
++-++ ..|+ ..++.|...+.|.+|.++.+.
T Consensus 1101 fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1101 FLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred heeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 65433 1232 234556677788888777654
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=9.7e-06 Score=76.79 Aligned_cols=410 Identities=12% Similarity=0.084 Sum_probs=235.4
Q ss_pred HHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcH
Q 044812 62 ITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138 (547)
Q Consensus 62 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 138 (547)
++.+...|++++|.+...++.. | +.....+=+-++.+.+++++|+.+.+.-... .-+..-+--=..+..+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 4556677899999998888764 3 4556666677888999999999665443211 111111111233445788999
Q ss_pred HHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC
Q 044812 139 VGMLIHGLSIKIGFVVD-VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK 217 (547)
Q Consensus 139 ~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~ 217 (547)
+|...++ |..++ ..+...-...+.+.|++++|..+|+.+.+.+...+..-+.+-+..-.... ...+.+..+
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l---~~~~~q~v~ 168 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL---QVQLLQSVP 168 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh---hHHHHHhcc
Confidence 9988887 33333 33555556778899999999999999977655544433332211111000 111344444
Q ss_pred CCChhhHH---HHHHHHHHCCCHHHHHHHHHHchhcC-------CCCCCh------H-HHHhHHHHhhccCCchhHHHHH
Q 044812 218 RRNVYAWT---AMINGYVQNGDLDEALVLFLEMQLKD-------RIEPNK------V-SLVSVLPTCSSLIGLSGGKQIH 280 (547)
Q Consensus 218 ~~~~~~~~---~li~~~~~~~~~~~A~~~~~~m~~~~-------~~~p~~------~-~~~~ll~~~~~~~~~~~a~~~~ 280 (547)
.....+|. .....+...|++.+|+++++.. .+. +-.-+. . .-.-+.-.+-..|+.++|..++
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA-~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKA-LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 43333443 3456778899999999999876 111 111111 1 1122334566789999999999
Q ss_pred HHHHHcCCCCchhH----HHHHHHHHHhcCCHH-HHHHHHhcCCCC-------------CChhhHH-HHHHHHHhcCChH
Q 044812 281 GFAIRKELNHDVSL----CNALIDMYSKCGSLD-CARRVFEDSSFN-------------KDAITWS-SIVSGYGLHGKGH 341 (547)
Q Consensus 281 ~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~-~A~~~~~~~~~~-------------~~~~~~~-~li~~~~~~~~~~ 341 (547)
....+... +|... -|.|+.+-....-++ .++..++..... ......| .++..|. +.-+
T Consensus 248 ~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~ 324 (652)
T KOG2376|consen 248 VDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMD 324 (652)
T ss_pred HHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHH
Confidence 99988773 33322 223332211111111 222223221100 1111111 2222222 2223
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHH
Q 044812 342 EAVLLYNKMVCLGSKPDIITIVGVLSACG--RSGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRAGQLDRALDFI 418 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 418 (547)
.+.++....- +..|. ..+..++..+. +.....++.+++....+. .+-. ..+.-.++......|+++.|.+++
T Consensus 325 q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 325 QVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3333322221 22333 34455555433 223577888888877654 2223 455667788888999999999999
Q ss_pred H--------hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CC---CCCchHHHHHHHHHcCCCHHHHHH
Q 044812 419 K--------TM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL----EP---ENPSNYVSLSNLYASSRRWDAVAE 482 (547)
Q Consensus 419 ~--------~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~l~~~~~~~g~~~~A~~ 482 (547)
. .+ .+.-.+.+...++..+.+.++.+.|..++..++.- .+ .-...+..++..-.+.|+.++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 8 33 22334445566777788888888888888887753 12 223345566667778899999999
Q ss_pred HHHHHHhC
Q 044812 483 LRTMMKDR 490 (547)
Q Consensus 483 ~~~~m~~~ 490 (547)
+++++.+.
T Consensus 480 ~leel~k~ 487 (652)
T KOG2376|consen 480 LLEELVKF 487 (652)
T ss_pred HHHHHHHh
Confidence 99998763
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=8.9e-07 Score=76.33 Aligned_cols=304 Identities=14% Similarity=0.150 Sum_probs=152.5
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCC---hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHH-HHHHHHHC
Q 044812 159 ANSLMSMYVKCGKFSECLNLFDEMPQRN---VGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA-MINGYVQN 234 (547)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~-li~~~~~~ 234 (547)
+.+.+.-+.+..++..|++++..-.+++ ....+.+..+|....++..|....+-+.... |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHh
Confidence 4555555677778888888776655433 3344555556666666655333322222221 22222211 23445556
Q ss_pred CCHHHHHHHHHHchhcCCCCCChHHHHhHH--HHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044812 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVL--PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR 312 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 312 (547)
+.+..|+++...| ... |+...-..-+ ....+.+++..+..++++.-..| +..+.+.......+.|+++.|.
T Consensus 92 ~i~ADALrV~~~~-~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 92 CIYADALRVAFLL-LDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cccHHHHHHHHHh-cCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 6666666666555 221 2211111111 11233444545544444432211 2333333444444555555555
Q ss_pred HHHhc----CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH---HHH--
Q 044812 313 RVFED----SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE---IYN-- 383 (547)
Q Consensus 313 ~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~---~~~-- 383 (547)
+-|+. .|.+| ...||.-+. ..+.|+++.|++...++++.|++-.+. +++ |...+... +=+
T Consensus 165 qkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgI--------Gm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 165 QKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGI--------GMTTEGIDVRSVGNTL 233 (459)
T ss_pred HHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCc--------cceeccCchhcccchH
Confidence 55543 12111 223333322 233455555555555555555432111 000 00000000 000
Q ss_pred HHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 384 SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP----VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.|-. ..-+..+|.-...+.+.|+++.|.+.+-.|| ...|++|+..+.-. -..+++....+-++-+++.+|-
T Consensus 234 ~lh~----Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 234 VLHQ----SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred HHHH----HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC
Confidence 0000 0001223333344567899999999999995 33577777665432 2345677777777778888988
Q ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 460 NPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
.+.+|..++-.|++..-++-|.+++-+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 888999999999999999999888765
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=9.3e-06 Score=79.72 Aligned_cols=240 Identities=12% Similarity=0.043 Sum_probs=164.1
Q ss_pred hccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC-------------CCcchHHHHHHHHHh
Q 044812 32 THRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-------------KDVYLYNSLINGYVK 98 (547)
Q Consensus 32 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~~~~~~~ll~~~~~ 98 (547)
.-|+++.|.+-.+.+. +..+|..+.+.|.+..+.|-|.-.+..|.. ++ ..-....-....
T Consensus 740 tiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 3478888877666553 457899999999999999999988888753 22 111122222356
Q ss_pred cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 044812 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNL 178 (547)
Q Consensus 99 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 178 (547)
.|..++|..+|.+.++ |..+=..|...|.+++|.++-+.--+.. =..||.....-+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHH
Confidence 7899999999999876 3455567888999999998876533222 234566666667778999999999
Q ss_pred hccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH
Q 044812 179 FDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258 (547)
Q Consensus 179 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 258 (547)
|++...+-......|..- +. ......+++. |...|.-....+-..|+.+.|+.+|... +
T Consensus 881 yEK~~~hafev~rmL~e~------p~---~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~Y~~A-~--------- 939 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEY------PK---QIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSFYSSA-K--------- 939 (1416)
T ss_pred HHhcCChHHHHHHHHHhC------hH---HHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHHHHHh-h---------
Confidence 998765422222221110 00 0222233333 3344555566667789999999999887 3
Q ss_pred HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044812 259 SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317 (547)
Q Consensus 259 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (547)
-|..+++..|-.|+.++|.++-++ .| |......|.+.|...|++.+|..+|-+
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 366778888889999999887653 33 566677789999999999999988864
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=6e-06 Score=82.76 Aligned_cols=220 Identities=10% Similarity=-0.020 Sum_probs=108.7
Q ss_pred hhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-----C--CCCCChhhHHHHHHHHHhcCC
Q 044812 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-----S--SFNKDAITWSSIVSGYGLHGK 339 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~--~~~~~~~~~~~li~~~~~~~~ 339 (547)
+.+..+++.|...|....... +.+...|--........|+.-++..+|.. + +--++..-|-+-......+|+
T Consensus 860 ~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 334445555555555544432 22333333333333445555555555542 1 111233323333333344454
Q ss_pred hHHHHHHHH----------HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHH----HHHHh
Q 044812 340 GHEAVLLYN----------KMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICAC----VVDML 405 (547)
Q Consensus 340 ~~~a~~~~~----------~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~ 405 (547)
.++-....+ +... |.+-....|........+.+.+..|.+...+.+.-...+.+...|+. +...+
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ 1017 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLE 1017 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 443332222 2222 22334556666666666667777666666554432222334444543 33445
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHcCCCHHHHHH
Q 044812 406 GRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN---PSNYVSLSNLYASSRRWDAVAE 482 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~ 482 (547)
+..|.++.|..-+...+..-+..+-..-+.. .-.++++++.+.|++++.+...+ ......++.+....+.-+.|..
T Consensus 1018 lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~ 1096 (1238)
T KOG1127|consen 1018 LSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQF 1096 (1238)
T ss_pred hhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHH
Confidence 5667777666655544322232222222221 44678888888888888764222 2345556666667777777777
Q ss_pred HHHHHHh
Q 044812 483 LRTMMKD 489 (547)
Q Consensus 483 ~~~~m~~ 489 (547)
.+-+...
T Consensus 1097 lLfe~~~ 1103 (1238)
T KOG1127|consen 1097 LLFEVKS 1103 (1238)
T ss_pred HHHHHHH
Confidence 7665543
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=3.7e-05 Score=83.60 Aligned_cols=235 Identities=12% Similarity=-0.006 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCC-C-CC--ChHHHHhHHHHhhccCCchhHHHHHHHHHHc----CCC--C-c
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDR-I-EP--NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK----ELN--H-D 291 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 291 (547)
..+.+...+...|++++|...+.+...... . .+ ...++..+...+...|+++.|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 445666777889999999988887621111 0 11 1234455566778889999999888776652 211 1 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHH--
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-----SFNKD--AITWSSIVSGYGLHGKGHEAVLLYNKMVCLG--SKPDII-- 360 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~-- 360 (547)
...+..+...+...|++++|...+.+. ...+. ...+..+...+...|+++.|...+.+..... ......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 233455667777889999999888752 11121 2334556677888999999999988875431 111110
Q ss_pred H-H-HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhHhcCCHHHHHHHHHhC-------CCCCC-H
Q 044812 361 T-I-VGVLSACGRSGLINEGLEIYNSVINTYRIKPT---TEICACVVDMLGRAGQLDRALDFIKTM-------PVEPS-P 427 (547)
Q Consensus 361 ~-~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~ 427 (547)
. . ...+..+...|+.+.|...+...... ..... ...+..+..++...|+.++|...+++. +..++ .
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 1 0 11123345578999999887765432 11111 112345677788999999999998876 22222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
.+...+..++...|+.++|...+.++++...
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 3667777888999999999999999998763
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2e-05 Score=73.98 Aligned_cols=426 Identities=11% Similarity=0.036 Sum_probs=239.8
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHH
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEA 105 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A 105 (547)
+....|+++.|...|.+..... ++|...|..-..+|+..|++++|++=-.+-.+ | ....|+....++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 4456788999999998888876 45888888888899999999988875554433 3 456788888888888999999
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHH-HHhCCCCchh--------HHHHHHHHH----------
Q 044812 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLS-IKIGFVVDVI--------LANSLMSMY---------- 166 (547)
Q Consensus 106 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~g~~~~~~--------~~~~l~~~~---------- 166 (547)
+.-|.+-++... -|...+.-+..++.. +... .+.|..- .-.++..++. .|..++..+
T Consensus 90 ~~ay~~GL~~d~-~n~~L~~gl~~a~~~--~~~~-~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKDP-SNKQLKTGLAQAYLE--DYAA-DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcCC-chHHHHHhHHHhhhH--HHHh-hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999988776531 133444555555511 0000 0000000 0000000110 111111111
Q ss_pred HhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC---------------CChhhHHHHHHHH
Q 044812 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR---------------RNVYAWTAMINGY 231 (547)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~---------------~~~~~~~~li~~~ 231 (547)
.....+..|...+.....+ .....|....+..+..- ..+.. .-..-.-.+.++.
T Consensus 166 l~d~r~m~a~~~l~~~~~~----------~~~~~~~~~~~~~~~p~-~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDEL----------LFYASGIEILASMAEPC-KQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred cccHHHHHHHHHHhcCccc----------cccccccccCCCCCCcc-cccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 1100111111111111000 00000000000000000 00000 0112355677788
Q ss_pred HHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHH-------HHHHHHHh
Q 044812 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCN-------ALIDMYSK 304 (547)
Q Consensus 232 ~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~ 304 (547)
.+..+++.|++-+... ... .-+..-++....++...|.+..+...-....+.|-. ...-|+ .+..+|.+
T Consensus 235 ykkk~f~~a~q~y~~a-~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKA-LEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHhhhHHHHHHHHHHH-HhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 8888888888888876 442 233444555666777777777776666666655521 112222 23345666
Q ss_pred cCCHHHHHHHHhcCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHH
Q 044812 305 CGSLDCARRVFEDSS-FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI-ITIVGVLSACGRSGLINEGLEIY 382 (547)
Q Consensus 305 ~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 382 (547)
.++++.++..|++.- ...+.. ...+....++++.......- +.|.. .-...=...+.+.|++..|+..|
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 677888888887621 011111 11223334455554444433 23332 12222356678889999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+++++. +-|...|..-.-+|.+.|.+..|+.=.+.. ...|+. ..|.--+.++....+++.|.+.|++.++.+|.+
T Consensus 382 teAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 382 TEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9988752 447889999999999999999888876655 344543 366666677777889999999999999999988
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
......+.+++..........++.+
T Consensus 460 ~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 460 AEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 8777777777765433333333333
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2e-05 Score=73.98 Aligned_cols=380 Identities=11% Similarity=0.080 Sum_probs=222.4
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCh
Q 044812 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV-ILANSLMSMYVKCGKF 172 (547)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~ 172 (547)
.+....|+++.|+..|.+.+.... +|...|..-..+++..|++++|.+=-.+.++ +.|+. ..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 455678999999999999987654 3777788889999999999998876666655 45664 5788899999999999
Q ss_pred HHHHHHhccCCCC---ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC-CC------ChhhHHHHHHHHH----------
Q 044812 173 SECLNLFDEMPQR---NVGSWNVRISGHASSGDFSLVVRSRRVFDQMK-RR------NVYAWTAMINGYV---------- 232 (547)
Q Consensus 173 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~-~~------~~~~~~~li~~~~---------- 232 (547)
++|+..|.+=.+. |...++-+..++...........--.++.... .| ....|..++..+-
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999887654 33345555555511100000000000000000 00 1112222322221
Q ss_pred HCCCHHHHHHHHHHch----hc-------CCCCCC----------------------hHHHHhHHHHhhccCCchhHHHH
Q 044812 233 QNGDLDEALVLFLEMQ----LK-------DRIEPN----------------------KVSLVSVLPTCSSLIGLSGGKQI 279 (547)
Q Consensus 233 ~~~~~~~A~~~~~~m~----~~-------~~~~p~----------------------~~~~~~ll~~~~~~~~~~~a~~~ 279 (547)
...+...|.-.+.... .. .+..|. ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1111122222221110 00 011110 01133444455555566666666
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhH-------HHHHHHHHhcCChHHHHHHHHH
Q 044812 280 HGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITW-------SSIVSGYGLHGKGHEAVLLYNK 349 (547)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~-------~~li~~~~~~~~~~~a~~~~~~ 349 (547)
+....+.. -+..-++....+|...|.+..+...-.+ .+ .-...-| ..+..+|.+.++++.+...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 66655554 3444455555666666666555544432 11 0000111 1223345555666667666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-C
Q 044812 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT-EICACVVDMLGRAGQLDRALDFIKTM-PVEP-S 426 (547)
Q Consensus 350 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 426 (547)
.......|+.. .+....+++........ -+.|.. .-...-...+.+.|++..|+..|.++ ...| |
T Consensus 324 aLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 324 ALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred HhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 55543333221 12222333333333221 223322 11112255677889999999999987 3446 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|..-.-+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.|++-.+.+
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66899999999999999999999999999999999999999999999999999999999877655
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=1.1e-06 Score=78.67 Aligned_cols=184 Identities=12% Similarity=0.013 Sum_probs=121.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDA----ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI--ITI 362 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~ 362 (547)
.....+..+...+...|+++.|...|++. ...|+. ..+..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556677777788888888888888763 223332 35667777888888888888888888775321111 234
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044812 363 VGVLSACGRS--------GLINEGLEIYNSVINTYRIKPTT-EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433 (547)
Q Consensus 363 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 433 (547)
..+..++... |+.++|.+.++.+.+. .|+. ..+..+..... ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 4444455443 6677888888887754 3432 22222211110 00000 0011245
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPEN---PSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...+...|++.+|+..++++++..|.+ +..+..++.++.+.|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 667889999999999999999987654 4688999999999999999999999887543
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=1.7e-06 Score=74.08 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=114.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCH
Q 044812 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411 (547)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 411 (547)
..|...|+++......+.+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCH
Confidence 467888888776555433221 11 01223566778887888776542 45888999999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSAS-VMHGN--SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999987 4455 566888888764 67777 59999999999999999999999999999999999999999999
Q ss_pred HHhCCC
Q 044812 487 MKDRGL 492 (547)
Q Consensus 487 m~~~~~ 492 (547)
+.+..-
T Consensus 170 aL~l~~ 175 (198)
T PRK10370 170 VLDLNS 175 (198)
T ss_pred HHhhCC
Confidence 987654
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.70 E-value=4.3e-05 Score=76.89 Aligned_cols=437 Identities=13% Similarity=0.009 Sum_probs=247.1
Q ss_pred HHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 044812 40 KQSHSQILSLGHISN-PFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115 (547)
Q Consensus 40 ~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 115 (547)
..+...+....+.|+ ...|..|...|+...+...|.+.|+...+ .+..++..+...|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 333334444444455 45788888888888899999999988876 35667888889999999999998883332221
Q ss_pred CCC-CCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHH-H
Q 044812 116 NVS-PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNV-R 193 (547)
Q Consensus 116 ~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l 193 (547)
... .-...|....-.+...++...+..-|+...+.. +.|...|..++.+|..+|++..|.++|.+...-++.++-. .
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 100 011112223445667788888888888888776 4578888899999999999999999998877644433222 1
Q ss_pred --HHHHHcCCCchhHHHHHHHHhhcCC-------CChhhHHHHHHHHHHCCCHHHH------------------------
Q 044812 194 --ISGHASSGDFSLVVRSRRVFDQMKR-------RNVYAWTAMINGYVQNGDLDEA------------------------ 240 (547)
Q Consensus 194 --i~~~~~~g~~~~a~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A------------------------ 240 (547)
....+..|.+.++..+....-.... .-..++-.+...+.-.|-..+|
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 2234556666664332221111100 0111222222222222222222
Q ss_pred --------HHHHHHchhcCCCCCChHHHHhHHHHhhccCCc---h---hHHHHHHHHHHcCCCCchhHHHHHHHHHHh--
Q 044812 241 --------LVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL---S---GGKQIHGFAIRKELNHDVSLCNALIDMYSK-- 304 (547)
Q Consensus 241 --------~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 304 (547)
..+|-.. + .. .|+......+..-..+.+.. + .+.+.+-.- .....+..+|..|+.-|.+
T Consensus 715 ~Wi~asdac~~f~q~-e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h--lsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQE-E-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH--LSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred HHHHHhHHHHHHHHh-c-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH--HHHhhccchHHHHhHHHHHHH
Confidence 2222222 1 11 22222222222212222222 1 000000000 0111123334444433332
Q ss_pred --c----CCHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044812 305 --C----GSLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376 (547)
Q Consensus 305 --~----g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 376 (547)
. .+...|+..+.. ... ..+...||.|.-. ...|++.-|...|-+-.... +-+..+|..+.-.+....+++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHH
Confidence 1 123356666654 222 2345556666554 55577777777766655542 335667777777788889999
Q ss_pred HHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-------PVEPSPSIWGALVSASVMHGNSEMQDL 448 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~ 448 (547)
.|...|.... .+.| +...|-.........|+.-++..+|..- +..|+..-|..........|+.++-+.
T Consensus 868 ~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 868 HAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 9999999776 4455 5666665555566778888888888762 233555555555445556666555444
Q ss_pred H----------HHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 449 A----------YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 449 ~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
. +++.....|....+|...+....+.+.+.+|.+...+.
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3 34444456888888888888888888888888877765
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=1e-06 Score=85.24 Aligned_cols=190 Identities=16% Similarity=0.183 Sum_probs=155.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044812 288 LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367 (547)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 367 (547)
.+|-...-..+...+...|-...|..+|++.. .|...|.+|+..|+..+|..+..+-.+ -+|+..-|..+.+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 35555566778889999999999999999866 466788899999999999999888887 3788999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEM 445 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 445 (547)
......-+++|.++.+....+ .-..+.....+.++++++.+.|+.. .+.| ...+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888889999988876443 1222333334578999999999864 5555 45689889999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
|.+.|.....++|++...|+.+.-+|.+.|+..+|...+++..+.+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999998877743
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=4.4e-06 Score=86.55 Aligned_cols=204 Identities=12% Similarity=0.150 Sum_probs=168.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcC-C-CCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 044812 289 NHDVSLCNALIDMYSKCGSLDCARRVFEDS-S-FNK-----DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT 361 (547)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 361 (547)
|.+...|-..|......++.++|.+++++. + +.+ -...|.+++..-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 456667888888889999999999999872 2 111 2245777777777778888889999999874 223567
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP---SPSIWGALVSAS 437 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 437 (547)
|..|...|.+.+++++|.++++.|.++++ .....|...++.+.+..+-+.|..++.+. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999775 67889999999999999999999999876 3223 344556666677
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCC
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSP 496 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 496 (547)
.+.|+.+++..+|+..+.-.|.....|+.+++.-.+.|+.+.++.+|++....++.+..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 89999999999999999999999999999999999999999999999999998886543
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=8.3e-05 Score=71.24 Aligned_cols=315 Identities=13% Similarity=0.023 Sum_probs=189.2
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHH-HHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHH-
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS-LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA- 297 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 297 (547)
....|..+...+...|+.+.+.+.+..........++... .......+...|+++.|...++...+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 3556777778888888888877777665233322333322 2223345677899999999999988874 334444442
Q ss_pred --HHHHHHhcCCHHHHHHHHhcC-CCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044812 298 --LIDMYSKCGSLDCARRVFEDS-SFNKDA-ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373 (547)
Q Consensus 298 --l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 373 (547)
........|..+.+.+.+... +..|+. .....+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222222345566666666542 212332 334456678889999999999999999863 334667788888999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCch--hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC--C-HHHH-H--HHHHHHHHcCCHH
Q 044812 374 LINEGLEIYNSVINTYRIKPTT--EICACVVDMLGRAGQLDRALDFIKTM-PVEP--S-PSIW-G--ALVSASVMHGNSE 444 (547)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~-~~~~-~--~l~~~~~~~~~~~ 444 (547)
++++|...+++..+.....|+. ..|..+...+...|++++|..++++. ...| . .... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999887642222332 34557888899999999999999986 2223 1 2111 1 2233334445433
Q ss_pred HHHHHHHHHHhh---C-CCCC--chHHHHHHHHHcCCCHHHHHHHHHHHHhCCCcc-CCccceEeeCCEEEEEeeCCCCC
Q 044812 445 MQDLAYKSLIQL---E-PENP--SNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK-SPGCSWISIHGKTHCFSVADKAH 517 (547)
Q Consensus 445 ~a~~~~~~~~~~---~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 517 (547)
.+.+. +.+... . |... ......+.++...|+.++|..+++.+....... ..+..+..+...+- ........
T Consensus 243 ~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l-~A~~~~~~ 320 (355)
T cd05804 243 VGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA-EALYAFAE 320 (355)
T ss_pred hHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH-HHHHHHHc
Confidence 33332 222221 1 2222 222367778889999999999999987543321 01111111111100 01111235
Q ss_pred CChHHHHHHHHHHHHHHHHcC
Q 044812 518 PCSVSIYEMLDDLILIMRGAA 538 (547)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~ 538 (547)
++.+++.+.|.........-|
T Consensus 321 g~~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 321 GNYATALELLGPVRDDLARIG 341 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHhC
Confidence 577788888877766654444
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=2.9e-08 Score=56.96 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=29.0
Q ss_pred hCCCCChhHHHHHHHHHHhcCCchhHHHHhccCC
Q 044812 49 LGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ 82 (547)
Q Consensus 49 ~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 82 (547)
+|+.||..+|+.||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888888888888888888888888888874
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=1.3e-06 Score=70.74 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=71.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVM 439 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 439 (547)
+..+...+...|++++|...|+..... -+.+...+..+..++.+.|++++|...|++. ...| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344555666777777777777776643 1235666667777777777777777777765 3333 45566777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
.|++++|+..|+++++..|+++..+...+.+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 77777777777777777777776666655554
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=4.3e-08 Score=56.23 Aligned_cols=33 Identities=42% Similarity=0.707 Sum_probs=27.0
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 044812 151 GFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183 (547)
Q Consensus 151 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 183 (547)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 112
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.63 E-value=0.00012 Score=64.90 Aligned_cols=305 Identities=11% Similarity=0.081 Sum_probs=157.6
Q ss_pred HHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHH---HHHHhcCChhHHHHHHHHhhhCCCCCCcchHHH-HHHHHcc
Q 044812 58 STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLI---NGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT-ISKLSGE 133 (547)
Q Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~ 133 (547)
..-+...+...|++.+|+.-|....+.|+..|.++. ..|...|+...|+.=|...++ .+||-..-.+ -...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 334455555566666666666666665555555543 245555555555555555554 3444322111 1223344
Q ss_pred CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHH
Q 044812 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213 (547)
Q Consensus 134 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~ 213 (547)
.|.++.|..=|+..++.. |+..+ ...++.+.-..++-+.+ ...+..+.-+|+...+.....-+
T Consensus 119 ~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHH
Confidence 555555555555554432 11100 01111111111111111 11122233334444433333333
Q ss_pred hhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchh
Q 044812 214 DQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVS 293 (547)
Q Consensus 214 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 293 (547)
-++...|...|..-..+|...|++..|+.=++.. .+.. ..+..
T Consensus 182 lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~a------------------------------------skLs-~DnTe 224 (504)
T KOG0624|consen 182 LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQA------------------------------------SKLS-QDNTE 224 (504)
T ss_pred HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHH------------------------------------Hhcc-ccchH
Confidence 3333445555555556666666666665555444 2222 12233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhh----HHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCC-
Q 044812 294 LCNALIDMYSKCGSLDCARRVFED-SSFNKDAIT----WSSI---------VSGYGLHGKGHEAVLLYNKMVCLGSKPD- 358 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~----~~~l---------i~~~~~~~~~~~a~~~~~~m~~~g~~p~- 358 (547)
.+..+-..+...|+.+.++...++ +.+.||... |-.+ +......++|-++++..+...+......
T Consensus 225 ~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 225 GHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 333444455555555555555544 333444321 1111 1223456777788887777766533212
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 359 --IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 359 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
...+..+-.++...+++.+|++...+.. .+.| |+.++.--..+|.-...++.|+.=|+..
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2334556667778899999999999887 4466 4888888889999999999999998887
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=3.5e-06 Score=81.71 Aligned_cols=239 Identities=12% Similarity=0.066 Sum_probs=176.2
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHH
Q 044812 152 FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231 (547)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~ 231 (547)
.+|-...-..+...+...|-...|..+|++. ..|..+|.+|+..|+..+|+....-.-+ .+|+...|..+.+..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 3455555667788899999999999999986 5788889999999988885544443333 567888999999888
Q ss_pred HHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044812 232 VQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311 (547)
Q Consensus 232 ~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 311 (547)
....-+++|.++.+....+ .-..+.....+.++++++.+.++.-.+.+ +....+|-.+..+..+.++++.|
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 8888899999999876222 11122222334688888888888877765 55677888888888899999999
Q ss_pred HHHHhc-CCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 044812 312 RRVFED-SSFNKD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389 (547)
Q Consensus 312 ~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 389 (547)
.+.|.. ....|| ...||.+-.+|.+.++-.+|...+.+..+.+. -+-..+...+....+.|.+++|.+.+.++....
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 998876 334565 45799999999999999999999999988763 334455556666788899999999988876543
Q ss_pred CCCCchhHHHHHHHHhH
Q 044812 390 RIKPTTEICACVVDMLG 406 (547)
Q Consensus 390 ~~~~~~~~~~~l~~~~~ 406 (547)
....|..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 33335555555554433
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=9.7e-07 Score=71.41 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
+.++++..+ +.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++.+.
T Consensus 13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555553 34543 556788889999999999999987 4455 6679999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+|.++..+..++.++...|++++|++.++...+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999987654
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=5.4e-06 Score=78.32 Aligned_cols=249 Identities=12% Similarity=0.076 Sum_probs=184.2
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (547)
..-+.+.|++.+|.-.|+...++ -+-+...|..|.......++-..|+..+.+..+.. +.+..+...|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 45567889999999999877222 23356678888888888888889999998888876 5577788888888999999
Q ss_pred HHHHHHHHhcC-CCCC----------ChhhHHHHHHHHHhcCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHhccCcH
Q 044812 308 LDCARRVFEDS-SFNK----------DAITWSSIVSGYGLHGKGHEAVLLYNKM-VCLGSKPDIITIVGVLSACGRSGLI 375 (547)
Q Consensus 308 ~~~A~~~~~~~-~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~g~~ 375 (547)
-..|...++.- ...| +...-+. ..+..........++|-++ ...+..+|......|.-.|-..|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999988751 0000 1000000 1111222233444555555 4445457888888888889999999
Q ss_pred HHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 376 NEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
++|...|+.+.. ++| |..+||.|...+....+.++|+..|++. .++|+-+ ....|.-+|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999984 466 7889999999999999999999999987 7888755 778899999999999999999999
Q ss_pred HHhhCCC----------CCchHHHHHHHHHcCCCHHHHHHHH
Q 044812 453 LIQLEPE----------NPSNYVSLSNLYASSRRWDAVAELR 484 (547)
Q Consensus 453 ~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (547)
++.+.+. +..+|..|=.++.-.++.|-+.+..
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 8876432 1246777777777777777555543
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.54 E-value=1.7e-05 Score=67.70 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=116.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (547)
..+-..+...|+-+....+....... .+-|......++....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44556667777777777766664432 122444555577778888888888888888864 336688888888888888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 408 AGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 408 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|..++.......+.+..+-..|..+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888888766 3444 455778888888888888888888888888777788888888888888888888888765
Q ss_pred H
Q 044812 486 M 486 (547)
Q Consensus 486 ~ 486 (547)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00014 Score=62.30 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=71.0
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCc
Q 044812 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR----SGL 374 (547)
Q Consensus 299 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~ 374 (547)
...|+..|++++|++..+... .... ...=+..+.+..+++-|...+++|.+- -+..|.+.|..++.+ .++
T Consensus 115 a~i~~~~~~~deAl~~~~~~~-~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE-NLEA--AALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc-hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 444556666666666665522 2221 111222334445555666666666542 234455545444332 234
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNS-EMQDLAYK 451 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~ 451 (547)
+.+|.-+|+++.++ .+|+..+.+-...++...|++++|..++++. ....++.++..++.+-...|.. +...+.+.
T Consensus 189 ~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 55555555555432 3455555555555555555555555555544 2222344444444433333332 33334444
Q ss_pred HHHhhCCC
Q 044812 452 SLIQLEPE 459 (547)
Q Consensus 452 ~~~~~~~~ 459 (547)
++....|.
T Consensus 267 QLk~~~p~ 274 (299)
T KOG3081|consen 267 QLKLSHPE 274 (299)
T ss_pred HHHhcCCc
Confidence 44444443
No 118
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=5.9e-05 Score=69.54 Aligned_cols=214 Identities=11% Similarity=0.040 Sum_probs=128.2
Q ss_pred CCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCCh--HHHHH
Q 044812 271 IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG-SLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKG--HEAVL 345 (547)
Q Consensus 271 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~--~~a~~ 345 (547)
+..+.|......+++.. +-+..+|+....++...| ++++++..++++ .. +.+..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 33444444444444433 223334444444444455 456666666552 11 23344555544444444542 56677
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc---CC----HHHHHHHH
Q 044812 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA---GQ----LDRALDFI 418 (547)
Q Consensus 346 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~ 418 (547)
+++++.+... -|...|....-++...|+++++++.++++++. . .-+...|+.....+.+. |. .++++++.
T Consensus 130 ~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 7777776532 25667777667777777888888888888764 2 23555565555444443 22 24566666
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC-----------------
Q 044812 419 KTM-PVEP-SPSIWGALVSASVMH----GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR----------------- 475 (547)
Q Consensus 419 ~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------- 475 (547)
.++ ...| |...|+.+...+... ++..+|.+.+.++.+.+|.++.+...|++.|....
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 443 4445 456788777777763 44566888888888888888888999999998642
Q ss_pred -CHHHHHHHHHHHH
Q 044812 476 -RWDAVAELRTMMK 488 (547)
Q Consensus 476 -~~~~A~~~~~~m~ 488 (547)
..++|.++++.+.
T Consensus 287 ~~~~~a~~~~~~l~ 300 (320)
T PLN02789 287 SDSTLAQAVCSELE 300 (320)
T ss_pred ccHHHHHHHHHHHH
Confidence 3467888888873
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=1.6e-05 Score=80.82 Aligned_cols=159 Identities=9% Similarity=0.032 Sum_probs=113.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICA 399 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ 399 (547)
.+...+-.|.....+.|.+++|..+|+...+ +.|+ ......+...+.+.+++++|...+++.... .| +.....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHH
Confidence 3466777788888888888888888888887 4665 455666777788888888888888888753 44 566677
Q ss_pred HHHHHhHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCH
Q 044812 400 CVVDMLGRAGQLDRALDFIKTMP-VEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 477 (547)
.+..++.+.|++++|..+|++.- ..|+ ..++..+..++...|+.++|...|+++.+...+-...|+.++ ++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHH
Confidence 77888888888888888888872 3444 568888888888888888888888888887644434444332 223
Q ss_pred HHHHHHHHHHHhCC
Q 044812 478 DAVAELRTMMKDRG 491 (547)
Q Consensus 478 ~~A~~~~~~m~~~~ 491 (547)
..-...++++.-.+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (694)
T PRK15179 233 NADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHcCccc
Confidence 33444555554333
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=2e-05 Score=70.39 Aligned_cols=183 Identities=13% Similarity=-0.009 Sum_probs=126.0
Q ss_pred CChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCChh----hH
Q 044812 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-H-DVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAI----TW 327 (547)
Q Consensus 255 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~----~~ 327 (547)
.....+......+...|+++.|...++.+...... | ....+..+..++...|++++|...+++. ...|+.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34567788888999999999999999999876521 1 1246677899999999999999999873 2233222 35
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHH
Q 044812 328 SSIVSGYGLH--------GKGHEAVLLYNKMVCLGSKPDII-TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398 (547)
Q Consensus 328 ~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (547)
..+..++... |++++|.+.++++.+. .|+.. ....+..... . .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH-H--------HHH
Confidence 5555666554 7789999999999875 45432 2222211100 0 0000 0 111
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 399 ACVVDMLGRAGQLDRALDFIKTM----PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
..+...|.+.|++++|...+++. +..| ....+..++.++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24667788999999999998876 2233 345888899999999999999998888776554
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=3e-05 Score=66.30 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 044812 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGAL 433 (547)
Q Consensus 356 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 433 (547)
.|+......+-..+...|+-+....+...... ..+.+.......+....+.|++.+|...+++. .-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55433336666677888888888888877643 22446677777899999999999999999998 445688899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
..+|.+.|+.+.|...|.+++++.|.++...+.|+..|.-.|+.+.|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999876654
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.42 E-value=0.003 Score=63.62 Aligned_cols=415 Identities=15% Similarity=0.130 Sum_probs=216.1
Q ss_pred hcCCchhHHHHhccCCCC-CcchHHHHHHHH--HhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHH
Q 044812 67 LCGQPTQSQLVFNSIQHK-DVYLYNSLINGY--VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI 143 (547)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~-~~~~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 143 (547)
.++++..|.+...++.+. ....|...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 446777777777766442 223455555554 4667888888777777655444 667777777778888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChH----HHHHHhccCCCCChhhHHHHHHHHHcCCCchhH------HHHHHHH
Q 044812 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFS----ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV------VRSRRVF 213 (547)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a------~~a~~~~ 213 (547)
|+...+. .|+......+..+|.+.+++. .|+++++...++--.-|+.+--........+.+ .-|.+.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 8877654 344555556666777766553 466666655554444444332222222222221 1134444
Q ss_pred hhcCCCC-----hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCC
Q 044812 214 DQMKRRN-----VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288 (547)
Q Consensus 214 ~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 288 (547)
+.+.+.+ ..-.-.-...+...|++++|++++..-....-...+...-+.-+..+...+++.+..++-.++...|-
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 4443322 11111122345567889999999843313333344555555667777888888888888888888773
Q ss_pred CCchhHHHHHHHHHH----------------hcCCHHHHHHHHhc-CCC-CCChhh-HHHHHHHHHhcCChHHHHHHHHH
Q 044812 289 NHDVSLCNALIDMYS----------------KCGSLDCARRVFED-SSF-NKDAIT-WSSIVSGYGLHGKGHEAVLLYNK 349 (547)
Q Consensus 289 ~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~-~~~-~~~~~~-~~~li~~~~~~~~~~~a~~~~~~ 349 (547)
. | |...++.+. ..+..+...+..++ .+. ..++.. +--+..-+..-|+.+++...|-+
T Consensus 258 D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 258 D-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred c-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 2 2 222222111 12223333333222 221 122221 11122223345777776654433
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchh-------HHHHHHHHhHhcCC-----HHHHHHH
Q 044812 350 MVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE-------ICACVVDMLGRAGQ-----LDRALDF 417 (547)
Q Consensus 350 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~~A~~~ 417 (547)
-. |-+|- |..=+..|...=..+.-..++..... ..++.. -+...+..-.-.|. -+.-..+
T Consensus 334 kf--g~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~ 405 (932)
T KOG2053|consen 334 KF--GDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAY 405 (932)
T ss_pred Hh--CCCcH---hHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 22 22221 11111111111112222222222211 111111 01111111111121 1112222
Q ss_pred HHhC------C------CCCC---------HHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 418 IKTM------P------VEPS---------PSIWGALVSASVMHGNS---EMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 418 ~~~~------~------~~p~---------~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
+.+. + .-|. ..+-+.|+..+.+.++. -+|+-+++.....+|.|..+-..|+++|.-
T Consensus 406 ~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~ 485 (932)
T KOG2053|consen 406 VRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSY 485 (932)
T ss_pred HHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 2111 0 1111 12446677888888774 466777888888889898888899999999
Q ss_pred CCCHHHHHHHHHHHHhCCCccCC
Q 044812 474 SRRWDAVAELRTMMKDRGLKKSP 496 (547)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~~~~~~ 496 (547)
.|-+..|.++++.+.-+.|..+.
T Consensus 486 lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 486 LGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred hcCChhHHHHHHhcchHHhhhcc
Confidence 99999999999998777776544
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00017 Score=61.72 Aligned_cols=245 Identities=9% Similarity=0.012 Sum_probs=155.3
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (547)
++-+.-.|.+..++..-... ... +.+...-..+-++|...|.+.....-. .... .|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~-~~~--~~~~e~d~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKF-SSS--KTDVELDVYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhh-ccc--cchhHHHHHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcch
Confidence 44555567777777666554 222 234444444555666666554332211 1111 2333333333333333444
Q ss_pred HHHHHHHHhc-C---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044812 308 LDCARRVFED-S---SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYN 383 (547)
Q Consensus 308 ~~~A~~~~~~-~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 383 (547)
.+.-..-+.+ + ....+......-...|+..|++++|++...... +......=...+.+..+++-|...++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222 1 112232223333456889999999999887621 22333333445677888999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 384 SVINTYRIKPTTEICACVVDMLGR----AGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
+|..- .+-.+.+.|..++.+ .+.+.+|.-+|++| +..|+..+.+....++...|++++|+.+++.++..+
T Consensus 162 ~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 99642 345566666666654 45799999999999 367899999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCCHHHH-HHHHHHHHh
Q 044812 458 PENPSNYVSLSNLYASSRRWDAV-AELRTMMKD 489 (547)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 489 (547)
+.+|.+...++-+-...|+-.++ .+.+..++.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999988888888876554 445555543
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=6e-05 Score=64.60 Aligned_cols=155 Identities=10% Similarity=0.099 Sum_probs=115.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 299 IDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 299 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
+-.|...|+++.+....+... .|. ..+...++.+++...++...+.. +.|...|..+...+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~-~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA-DPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh-Ccc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 446777888877655544322 121 01223566778888888777753 44688899999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHh-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDML-GRAGQ--LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
...|++..+.. +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|+++
T Consensus 93 ~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987542 33677888888864 67777 59999999987 4455 5668889999999999999999999999
Q ss_pred HhhCCCCCchHH
Q 044812 454 IQLEPENPSNYV 465 (547)
Q Consensus 454 ~~~~~~~~~~~~ 465 (547)
++..|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999987765443
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=6e-06 Score=66.47 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=73.3
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+......+...+...|++++|.+.++.. ...| +...|..+..++...|+++.|...++++.+.+|.++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3444556667777778888888887776 3334 5567777777888888888888888888888888888888888888
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 044812 472 ASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|...+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 88888888888887776543
No 126
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.39 E-value=1.5e-05 Score=63.38 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=83.6
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+....-.+...+...|++++|..+|+-. ...| +..-|..|.-++...|++++|+..|.++..++|++|..+..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444445666778899999999999987 4455 5568888999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 044812 472 ASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~ 489 (547)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998764
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.33 E-value=0.00012 Score=76.54 Aligned_cols=227 Identities=12% Similarity=0.167 Sum_probs=167.8
Q ss_pred ChHHHHhHHHHhhccCCchhHHHHHHHHHHc-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-hhhHHHH
Q 044812 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-ELNH---DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD-AITWSSI 330 (547)
Q Consensus 256 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l 330 (547)
....|...|.-....++.+.|+++.+++... ++.- -..+|.++++.-..-|.-+...++|++..---| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3455666677777778888888887777642 2211 234677788877778888889999988542334 3458899
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC
Q 044812 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410 (547)
Q Consensus 331 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 410 (547)
...|.+.+++++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.++.+...-.-........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999887 34567889999999999999999999999988642111135556667777789999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCch-HHHHHHHHHcCCCHHHHHHH
Q 044812 411 LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE--PENPSN-YVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 411 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~ 483 (547)
.+++..+|+.. .-.| -...|+.++..-.++|+.+.+..+|++++.+. |..... |...+..-.+.|+-+.+..+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 99999999987 3234 45689999999999999999999999999876 444443 34444444445665444433
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.32 E-value=1.6e-05 Score=74.67 Aligned_cols=122 Identities=10% Similarity=0.135 Sum_probs=97.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVM 439 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 439 (547)
...|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566667778888888888888755 344 4445777777788888888888776 3234 56677777788889
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998875
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=0.00033 Score=72.36 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 294 LCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
.+..+..+|-+.|+.++|...+++. .. ..|+...|.+...|... +.++|..++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 4444555555555555555555541 11 23344455555555555 555555555544332 333
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 451 (547)
.+++..+.++|.++... .+.+...+-.+...... ..+..--..++..+-..|...++++++..+++
T Consensus 182 ~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~------------~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLG------------HREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHh------------hhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 34555555555555432 11122222222211111 11122234455556667777778888888888
Q ss_pred HHHhhCCCCCchHHHHHHHHH
Q 044812 452 SLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 452 ~~~~~~~~~~~~~~~l~~~~~ 472 (547)
.+++.+|.|..+..-++.+|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 888888888777777777776
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=3.5e-05 Score=79.30 Aligned_cols=249 Identities=12% Similarity=0.110 Sum_probs=116.7
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHH-HHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHH
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVS-LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNA 297 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 297 (547)
.+...+..|+..+...+++++|.++.+.. .. ..|+... |..+...+.+.++...+..+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~-l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEH-LK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHH-HH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 45667778888888888888888888755 22 2333221 11111123333332222111 1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044812 298 LIDMYSKCGSLDCARRVFEDSSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376 (547)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 376 (547)
++.......++.....+...++- .-+...+..+..+|-+.|+.++|..+|+++.+.. +-|....+.+...+... +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22222222222222222222221 1122244445555555555555555555555543 22344455555555544 555
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
+|.+++.+.... |...+++.++.+++.++ ...|+.. +.-.++.+++..
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~---------------d~f~~i~~ki~~ 215 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDF---------------DFFLRIERKVLG 215 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccc---------------hHHHHHHHHHHh
Confidence 555555544332 23334445555555444 2222211 111111111111
Q ss_pred h-C-CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHH
Q 044812 456 L-E-PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYE 525 (547)
Q Consensus 456 ~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (547)
. + ..-..++.-+-..|...++|+++..+++.+.+..-.... ...+.+.++...|..|+..++.++
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~-----a~~~l~~~y~~kY~~~~~~ee~l~ 282 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK-----AREELIRFYKEKYKDHSLLEDYLK 282 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh-----hHHHHHHHHHHHccCcchHHHHHH
Confidence 1 0 111234555667788889999999999999876543222 133444555566666766554443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=6.8e-05 Score=69.86 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=75.6
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 446 (547)
....|+++.|+..++.+.+. .+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+..+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 34456677777777776653 2334555555666677777777777777765 44555 44556666777777777777
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
+..+++....+|+++..|..|+++|...|+..+|..-..++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77777777777777777777777776666655555554444
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00021 Score=60.81 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV-LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
|..++-+....|+.+.|...++.+.+.- |...-...+ ..-+...|++++|+++++.+.++. +.|..++-.-+-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHH
Confidence 3333444445555555666665555542 322211111 112334455566666666555441 22444444444444
Q ss_pred HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC---CHHHH
Q 044812 406 GRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR---RWDAV 480 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A 480 (547)
...|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-++++++=..|.++..|..+++.+.-.| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455544555444443 233455566666666666666666666666666666666665666665554443 34445
Q ss_pred HHHHHHHHhCC
Q 044812 481 AELRTMMKDRG 491 (547)
Q Consensus 481 ~~~~~~m~~~~ 491 (547)
.+++.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 55555554443
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.00028 Score=72.07 Aligned_cols=157 Identities=10% Similarity=-0.016 Sum_probs=124.7
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 044812 288 LNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDA-ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVG 364 (547)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ 364 (547)
.+.+...+..|.....+.|.+++|..+++. ..+.|+. .....++..+.+.+++++|+..+++.... .|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688899999999999999999999987 4556664 46777889999999999999999999986 454 566777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCC
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGN 442 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 442 (547)
+..++...|++++|..+|+++... .+-+..++..+..++...|+.++|...|++. ...|....|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HH
Confidence 788899999999999999999863 2345788889999999999999999999987 3345555555444 34
Q ss_pred HHHHHHHHHHHH
Q 044812 443 SEMQDLAYKSLI 454 (547)
Q Consensus 443 ~~~a~~~~~~~~ 454 (547)
...-..+++++.
T Consensus 232 ~~~~~~~~~~~~ 243 (694)
T PRK15179 232 LNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHcC
Confidence 444455565553
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.00057 Score=63.94 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=114.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHH
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-TEICACVVDM 404 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 404 (547)
+.-....+...|++++|+..+..++.. .|+ ..........+...++.++|.+.++++... .|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHH
Confidence 333444566789999999999998886 554 555556667789999999999999999854 565 5666678899
Q ss_pred hHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHH
Q 044812 405 LGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482 (547)
Q Consensus 405 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 482 (547)
|.+.|++.+|..++++. ..+-|+..|..|..+|...|+..++... .++.|...|+++.|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHH
Confidence 99999999999999987 3344778999999999999998776554 4567888899999999
Q ss_pred HHHHHHhCC
Q 044812 483 LRTMMKDRG 491 (547)
Q Consensus 483 ~~~~m~~~~ 491 (547)
.+...++..
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 999887665
No 135
>PLN02789 farnesyltranstransferase
Probab=98.23 E-value=0.00042 Score=64.03 Aligned_cols=191 Identities=13% Similarity=0.077 Sum_probs=137.2
Q ss_pred HHHHHHhcCCHHHHHHHHhc-CCCCCC-hhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 044812 298 LIDMYSKCGSLDCARRVFED-SSFNKD-AITWSSIVSGYGLHG-KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374 (547)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 374 (547)
+-..+...+..++|+.+..+ +.+.|+ ..+|+.-...+...| ++++++..++++.+...+ +..+++.-...+.+.|.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 33344556778888888876 233454 445776666666777 579999999999886433 34455544444445554
Q ss_pred --HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CC----H
Q 044812 375 --INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH---GN----S 443 (547)
Q Consensus 375 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~----~ 443 (547)
.+++..+++++.+.. +-+..+|+.....+.+.|+++++++.++++ ...| +...|+.....+.+. |. .
T Consensus 122 ~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 367888888887542 347888988888999999999999999998 3333 566787777666554 22 2
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHcC----CCHHHHHHHHHHHHhCC
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASS----RRWDAVAELRTMMKDRG 491 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~ 491 (547)
+..+....++++.+|.|..+|..+..++... ++..+|.+.+.+..+.+
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 5678888899999999999999999999883 45567888887765543
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.5e-06 Score=49.83 Aligned_cols=35 Identities=43% Similarity=0.638 Sum_probs=30.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCc
Q 044812 87 YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDD 121 (547)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 121 (547)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999998988873
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=7.3e-05 Score=60.12 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=88.3
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC
Q 044812 346 LYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV 423 (547)
Q Consensus 346 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 423 (547)
.+++.... .|+ ......+...+...|++++|.+.++.+.... +.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444443 443 3455666777888899999999999887642 447788888889999999999999998876 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 424 EP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 424 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
.| +...+..+..++...|+.++|...|+++.+..|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 566888888899999999999999999999998776533
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.17 E-value=0.0073 Score=57.44 Aligned_cols=204 Identities=13% Similarity=0.112 Sum_probs=136.0
Q ss_pred HHHHHHHHHHchhcCCCCCChHHHHhHHHHhhcc---CCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044812 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSL---IGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARR 313 (547)
Q Consensus 237 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 313 (547)
.+++..+++.. ...-..-+..+|..+..---.. ...+....+++.+...-..--.-+|..+++.-.+..-+..|..
T Consensus 309 t~e~~~~yEr~-I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERA-IEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 56777777766 3433444556666555433222 2367777777777765433334567778888888888999999
Q ss_pred HHhcCC---CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 044812 314 VFEDSS---FNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY 389 (547)
Q Consensus 314 ~~~~~~---~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 389 (547)
+|.+.. ..+ ++..+++++.-||. ++.+-|.++|+--.+. ..-+..-....+..+...++-..+..+|++....
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s- 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS- 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-
Confidence 997632 223 67778888887765 6678889998875554 2223344456677778888888999999999876
Q ss_pred CCCCc--hhHHHHHHHHhHhcCCHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHHcCCHH
Q 044812 390 RIKPT--TEICACVVDMLGRAGQLDRALDFIKTM----P--VEPSPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 390 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~--~~p~~~~~~~l~~~~~~~~~~~ 444 (547)
++.|+ ..+|..+++--..-|++..+.++-+++ + ..+....-..+++-|.-.+...
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 66664 578999999888899999998887765 2 2222233344555555555433
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.17 E-value=3.4e-06 Score=48.85 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 044812 87 YLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119 (547)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 119 (547)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=9.6e-05 Score=60.08 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=60.8
Q ss_pred cCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSP----SIWGALVSASVMHGNSEM 445 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~ 445 (547)
.++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.. ...|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555566666666655432211 1222333445556666666666666655 111222 233345556666666666
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
|+..++.. ...+..+..+...+++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666542 22233445566666777777777777766654
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5.4e-06 Score=48.39 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD 358 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 358 (547)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.10 E-value=4.2e-06 Score=60.68 Aligned_cols=78 Identities=14% Similarity=0.274 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 408 AGQLDRALDFIKTM-PVEP---SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 408 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 1122 344455567777777777777777777 555555556666667777777777777777
Q ss_pred HHH
Q 044812 484 RTM 486 (547)
Q Consensus 484 ~~~ 486 (547)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=7.2e-05 Score=70.41 Aligned_cols=125 Identities=15% Similarity=0.213 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCC
Q 044812 57 VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136 (547)
Q Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 136 (547)
....|+..+...++++.|+.+|+++.+.++.....+++.+...++..+|++++++..+.. +-+......-...+...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334555566667888888888888887666667777888888888888888888887642 2244455555666788888
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 044812 137 LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMP 183 (547)
Q Consensus 137 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 183 (547)
++.|+.+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888764 4455688888888888888888888888776
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.06 E-value=0.00011 Score=57.56 Aligned_cols=102 Identities=11% Similarity=0.129 Sum_probs=50.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVS 435 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 435 (547)
+..+...+...|++++|...|..+...+.-.+ ....+..+...+.+.|++++|...++.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444445555555666655555554321101 1223344555555555555555555544 11222 234555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
++...|+.++|...++++++..|+++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 5555666666666666666665555443
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.04 E-value=6e-05 Score=56.08 Aligned_cols=93 Identities=18% Similarity=0.307 Sum_probs=74.1
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|.+.++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888876 33343 3567778888888899999999999998888888888888999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 044812 476 RWDAVAELRTMMKDR 490 (547)
Q Consensus 476 ~~~~A~~~~~~m~~~ 490 (547)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888877543
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=8.3e-05 Score=58.19 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=81.5
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CchHHHH
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN---PSNYVSL 467 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l 467 (547)
.++..++..+.+.|++++|.+.|+++ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45666788889999999999999987 22343 3467778999999999999999999999988765 5678899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 468 SNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+.++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=9.6e-06 Score=46.92 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP 357 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 357 (547)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888877776
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00051 Score=55.81 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD--IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT--TEICACV 401 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 401 (547)
.|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+... ...|. ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 345555555 37778888888888877632211 223334456677888999999999888765 32222 2234456
Q ss_pred HHHhHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 402 VDMLGRAGQLDRALDFIKTMPVE-PSPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
...+...|++++|+..++..+.. .....+...+.++...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888889999999998776322 34456777788889999999999988875
No 149
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.01 E-value=0.015 Score=55.44 Aligned_cols=148 Identities=5% Similarity=0.051 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHH
Q 044812 340 GHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 340 ~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
.+.....+.++... ...| ..+|..+++.--+..-+..|..+|.++.+. +..+ ++.++++++.-|| .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 55666677766554 2333 356778888888888899999999999887 5555 7788888888665 4788999999
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C-CCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 418 IKTM-PVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQLE--P-ENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 418 ~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
|+-- ..-+|. .--...+.-+...++-..+..+|++++... | ....+|..++..-..-|+...+.++-+++...
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9853 333444 444667777888999999999999998762 2 23468999999999999999999998887643
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.01 E-value=2.2e-05 Score=54.44 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC-CHHHHHHHHHHHHh
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR-RWDAVAELRTMMKD 489 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 489 (547)
++.+|..++..+...|++++|+..|+++++.+|.++..|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999988765
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00067 Score=57.81 Aligned_cols=152 Identities=13% Similarity=0.136 Sum_probs=118.8
Q ss_pred cCChHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCH
Q 044812 337 HGKGHEAVLLYNKMVCL---G-SKPDII-TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~---g-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 411 (547)
..+.++.++++.++... | ..|+.. .|..+.-+....|+.+.|...++.+..++ +-+..+-..-.-.+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 34567777777776532 4 556654 45666777788899999999999997764 22333333334445678999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
++|.++++.. ...| |..++---+......|+.-+|++-+...++.-+.|..+|..|.+.|...|+++.|.-.++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999987 3334 6667877777788889999999999999999999999999999999999999999999999875
Q ss_pred C
Q 044812 490 R 490 (547)
Q Consensus 490 ~ 490 (547)
.
T Consensus 183 ~ 183 (289)
T KOG3060|consen 183 I 183 (289)
T ss_pred c
Confidence 4
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=7.7e-05 Score=65.16 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=79.1
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNSE 444 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~ 444 (547)
-+.+.+++.+|+..|.+.++ +.| |.+.|..-..+|.+.|.++.|++-.+.. .+.|... +|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 35667788888888888774 355 6667777778888888888888777765 5566544 8888888888888888
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHH
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 478 (547)
+|++.|+++++++|++......|-.+-.+.+..+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888766666655554444433
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.92 E-value=3e-05 Score=52.96 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=47.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+...+...|++++|++.|+++++..|.++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888888888888888888888887654
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.00029 Score=66.69 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=59.5
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 444 (547)
..+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34455666666666666666431 224555556666666666666666666655 3334 3445666666666666666
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
+|+..|+++++++|.++.....+..
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 6666666666666666555444433
No 155
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.84 E-value=0.027 Score=52.61 Aligned_cols=441 Identities=12% Similarity=0.058 Sum_probs=229.2
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhcCCchhHHHHhccCCC-CCcchHHHHHHHH--Hhc
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISN------PFVSTKLITAYALCGQPTQSQLVFNSIQH-KDVYLYNSLINGY--VKN 99 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~--~~~ 99 (547)
.|.+.+++.++..+|..+.+.. ..+ ....+.++++|.. .+.+..........+ -....|-.+..++ -+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 5677889999999998887764 223 2234567777765 455555555544433 1133455555443 467
Q ss_pred CChhHHHHHHHHhhhC--CCCC------------CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCC----CchhHHHH
Q 044812 100 HGHNEALELFSNMYYS--NVSP------------DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV----VDVILANS 161 (547)
Q Consensus 100 ~~~~~A~~~~~~m~~~--~~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ 161 (547)
+.+++|++.+..-... +-.| |...=++.+.++...|++.+++.+++.+...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899998888776654 2222 1111244566778888888888888887665433 67778887
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHC--CCHHH
Q 044812 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN--GDLDE 239 (547)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~ 239 (547)
++-.++++=-.+. -+.+...=...|--++-.|.+.-..-+ +. -+.+. .|.......++....-. .+..-
T Consensus 173 ~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d---~~-~Y~k~-~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 173 AVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFD---QR-PYEKF-IPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHh---hc-hHHhh-CcHHHHHHHHHHHHHhCCHhhccH
Confidence 6666655322111 111111111123333333322111000 00 00000 11222222222222211 11222
Q ss_pred HHHHHHHchhcCCCCCChHH-HHhHHHHhhccCCchhHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCCHHHHHHH
Q 044812 240 ALVLFLEMQLKDRIEPNKVS-LVSVLPTCSSLIGLSGGKQIHGFAIRKELNH----DVSLCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 240 A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~ 314 (547)
-++++..- ++.-+.|+... ...+.....+ +.+++..+-+.+....+.+ -..++..++....+.++...|.+.
T Consensus 244 ~mq~l~~W-e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~ 320 (549)
T PF07079_consen 244 LMQILENW-ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQY 320 (549)
T ss_pred HHHHHHHH-HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 22233222 33345565432 2223333332 4444444444333322111 234667777777888888888777
Q ss_pred HhcCC-CCCChhh-------HHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHhccCc-HHHH
Q 044812 315 FEDSS-FNKDAIT-------WSSIVSGYG----LHGKGHEAVLLYNKMVCLGSKPDIITIVGVL---SACGRSGL-INEG 378 (547)
Q Consensus 315 ~~~~~-~~~~~~~-------~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~---~~~~~~g~-~~~a 378 (547)
+.-+. ..|+... -..+-+..+ ..-+...=+.+|.......+.-.. ....|+ .-+-+.|. -++|
T Consensus 321 l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 321 LALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHH
Confidence 65321 1232221 111112222 111233345566666554332211 111222 22445555 7888
Q ss_pred HHHHHHHHHhcCCCC-chhHHHHHHH----HhHhc---CCH---HHHHHHHHhCCCCC----CHHHHHHHHHH--HHHcC
Q 044812 379 LEIYNSVINTYRIKP-TTEICACVVD----MLGRA---GQL---DRALDFIKTMPVEP----SPSIWGALVSA--SVMHG 441 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~-~~~~~~~l~~----~~~~~---g~~---~~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~~ 441 (547)
.++++.+.+ +.+ |...-|.+.. .|... ..+ -.-..++++.++.| +...-|.|..| +...|
T Consensus 400 lnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 400 LNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 999888764 334 4444333322 22211 112 22333445555555 34455666554 56889
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
++.++.-.-.-+.+..| ++.+|..++-++....++++|.++++.+.
T Consensus 477 ey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999998888889999 89999999999999999999999998754
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.00031 Score=59.08 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=63.8
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
..+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555566666667777777766655 21221 34677777788888888888888888888888877778788888
Q ss_pred HHcCCC--------------HHHHHHHHHHHHh
Q 044812 471 YASSRR--------------WDAVAELRTMMKD 489 (547)
Q Consensus 471 ~~~~g~--------------~~~A~~~~~~m~~ 489 (547)
+...|+ +++|.+++++...
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 877666 4556666655544
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.78 E-value=0.0011 Score=65.50 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=77.7
Q ss_pred CCChhhHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHHH
Q 044812 321 NKDAITWSSIVSGYGL--HG---KGHEAVLLYNKMVCLGSKPDI-ITIVGVLSACGRS--------GLINEGLEIYNSVI 386 (547)
Q Consensus 321 ~~~~~~~~~li~~~~~--~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 386 (547)
..|...|...+++... .+ +...|..+|++..+. .|+. ..+..+..++... .++..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4566778777776433 22 366788888888874 5653 3333333222111 11223333333322
Q ss_pred HhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
.......+...|..+.-.....|++++|...+++. ...|+...|..++..+...|+.++|.+.++++.+++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21012224455555555555566777777776665 44566666666666666777777777777777776666553
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.0055 Score=56.19 Aligned_cols=129 Identities=9% Similarity=0.082 Sum_probs=69.5
Q ss_pred HHHHHHhc-CCHHHHHHHHhc-------CCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHH-H
Q 044812 298 LIDMYSKC-GSLDCARRVFED-------SSFNKD--AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-----PDII-T 361 (547)
Q Consensus 298 l~~~~~~~-g~~~~A~~~~~~-------~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~ 361 (547)
+...|... |+++.|++.|++ -+ .+. ...+..+...+.+.|++++|.++|++....-.. .+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 44445555 566666666553 22 111 223556667788888888888888887654322 1222 2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhc-CCCCc--hhHHHHHHHHhHh--cCCHHHHHHHHHhCCCCCCHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTY-RIKPT--TEICACVVDMLGR--AGQLDRALDFIKTMPVEPSPS 428 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~~ 428 (547)
|...+-++...|+...|.+.+++..... ++..+ ......|+.++-. ...+++|+.-|+.+. +.|..
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 2333445666788888888888775331 22222 3445566676654 335777777777774 34444
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.4e-05 Score=43.42 Aligned_cols=31 Identities=45% Similarity=0.656 Sum_probs=23.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 044812 87 YLYNSLINGYVKNHGHNEALELFSNMYYSNV 117 (547)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 117 (547)
.+||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888877653
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.77 E-value=0.00036 Score=58.42 Aligned_cols=94 Identities=10% Similarity=-0.037 Sum_probs=74.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
....+..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556667777778888999998888876 22232 347888999999999999999999999999998888888888
Q ss_pred HHHH-------cCCCHHHHHHHHHHH
Q 044812 469 NLYA-------SSRRWDAVAELRTMM 487 (547)
Q Consensus 469 ~~~~-------~~g~~~~A~~~~~~m 487 (547)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666654
No 161
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.036 Score=51.21 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044812 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 373 (547)
+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+-.. . -++..|..++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCC
Confidence 33444555666777777777777777 57777777778888888887766654332 1 12366777777777777
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
+..+|..+...+ + +..-+..|.++|++.+|.+.--+.
T Consensus 252 ~~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 252 NKKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CHHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777766642 1 123456677777777776665554
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0028 Score=58.13 Aligned_cols=135 Identities=12% Similarity=0.245 Sum_probs=69.9
Q ss_pred HHHHHHHhc-CChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC--ChhhHHHHHHHHHHCCCH
Q 044812 161 SLMSMYVKC-GKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR--NVYAWTAMINGYVQNGDL 237 (547)
Q Consensus 161 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~ 237 (547)
.+...|... |++++|++.|++ |.++|..-..+ -...+..++..+.+.|++
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~---------------------------A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQK---------------------------AAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHH---------------------------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHcCCHHHHHHHHHH---------------------------HHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 344455555 677777777665 55555555433 234566788889999999
Q ss_pred HHHHHHHHHchhcCCCCC-----ChH-HHHhHHHHhhccCCchhHHHHHHHHHHcC--CCCc--hhHHHHHHHHHHh--c
Q 044812 238 DEALVLFLEMQLKDRIEP-----NKV-SLVSVLPTCSSLIGLSGGKQIHGFAIRKE--LNHD--VSLCNALIDMYSK--C 305 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~--~ 305 (547)
++|+++|++. ....... +.. .+...+-++...||...|...++...... +..+ ......|+.++-. .
T Consensus 172 ~~A~~~~e~~-~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 172 EEAIEIYEEV-AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHH-HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHH-HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 9999999887 4432221 111 22223334455566666666666655432 1111 2233445555443 2
Q ss_pred CCHHHHHHHHhcCCCCCCh
Q 044812 306 GSLDCARRVFEDSSFNKDA 324 (547)
Q Consensus 306 g~~~~A~~~~~~~~~~~~~ 324 (547)
..++.+..-|+.+. +.|.
T Consensus 251 e~f~~av~~~d~~~-~ld~ 268 (282)
T PF14938_consen 251 EAFTEAVAEYDSIS-RLDN 268 (282)
T ss_dssp CCHHHHCHHHTTSS----H
T ss_pred HHHHHHHHHHcccC-ccHH
Confidence 33555555555555 4443
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=0.00012 Score=52.89 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 044812 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP-SIWGALVSASVMHGNSEMQDLAYK 451 (547)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~ 451 (547)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++.+..|.. .....+..++.+.|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4555555555555543211112233333455555555555555555543222222 233334455555555555555554
Q ss_pred H
Q 044812 452 S 452 (547)
Q Consensus 452 ~ 452 (547)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=0.0018 Score=54.45 Aligned_cols=127 Identities=15% Similarity=0.202 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHH
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD--IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACV 401 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 401 (547)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 3456666666677777777777777665432222 345666666667777777777777766543 23 34445555
Q ss_pred HHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
...+...|+...+..-++.. ...+++|.++++++.+.+|++ +..++.-+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 55555555554443222211 112577888888888888876 545555444444
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.71 E-value=0.004 Score=50.50 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC-CCC---CHHHH
Q 044812 355 SKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-VEP---SPSIW 430 (547)
Q Consensus 355 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 430 (547)
..|+...-..|..+....|+..+|...|++.... -+.-|......+.++....+++..|...++++. -.| .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677777778888999999999999999988753 334578888888899999999999999998862 112 22334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 431 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
..+...+...|++..|+..|+.+....| .+..-......+.++|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 5577889999999999999999999888 4677788889999999988887766665543
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.71 E-value=0.00078 Score=63.80 Aligned_cols=101 Identities=15% Similarity=0.060 Sum_probs=81.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhc
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRA 408 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 408 (547)
....+...|++++|+..|++.++.. +-+...|..+..++...|++++|+..++++.+. .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999863 235778888888999999999999999999864 44 677888899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 044812 409 GQLDRALDFIKTM-PVEPSPSIWGALV 434 (547)
Q Consensus 409 g~~~~A~~~~~~~-~~~p~~~~~~~l~ 434 (547)
|++++|...|++. ...|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999987 5566555444333
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.9e-05 Score=42.74 Aligned_cols=30 Identities=33% Similarity=0.526 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGS 355 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 355 (547)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677778888888888888888887777653
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0013 Score=58.14 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=88.6
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCCchHHH
Q 044812 392 KPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMH---GNSEMQDLAYKSLIQLEPENPSNYVS 466 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 466 (547)
+-|...|-.|...|...|++..|..-|.+. .+. +++..+..+..++... ....++..+|+++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 448999999999999999999999999887 333 4566777777765543 35788999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCccCC
Q 044812 467 LSNLYASSRRWDAVAELRTMMKDRGLKKSP 496 (547)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 496 (547)
|+..+...|++.+|...|+.|.+..-..+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654443
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00042 Score=51.10 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCcchHHHHHHHHccCC--------CcHHHHHHHHHHHHhCCCCchhHH
Q 044812 89 YNSLINGYVKNHGHNEALELFSNMYYSNV-SPDDFTLATISKLSGEIK--------DLNVGMLIHGLSIKIGFVVDVILA 159 (547)
Q Consensus 89 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 159 (547)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999998877653 234667889999999999999999
Q ss_pred HHHHHHHHh
Q 044812 160 NSLMSMYVK 168 (547)
Q Consensus 160 ~~l~~~~~~ 168 (547)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.69 E-value=5.6e-05 Score=52.16 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=45.4
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|++.|+++.+.+|.++.++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999899999999999999999999988776543
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.69 E-value=0.0002 Score=48.78 Aligned_cols=61 Identities=23% Similarity=0.432 Sum_probs=48.4
Q ss_pred HHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 401 VVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
+...+.+.|++++|...|++. ...|+ ...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888899999988887 44564 55888888999999999999999999999988764
No 172
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.074 Score=52.97 Aligned_cols=321 Identities=11% Similarity=0.016 Sum_probs=188.2
Q ss_pred HhCCCCchhHHH-----HHHHHHHhcCChHHHHHHhccCCCCC---hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC--
Q 044812 149 KIGFVVDVILAN-----SLMSMYVKCGKFSECLNLFDEMPQRN---VGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-- 218 (547)
Q Consensus 149 ~~g~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~-- 218 (547)
..|++.+..-|. .+++-+...+.+..|+++-..+..|- ...+..+...+.+..+..+-+-+..+-.++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 345665555443 34666777788888888887777654 44566666666666544433334444444444
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCC----CChHHHHhHHHHhhccCCchhHHHHHHHHHHcC-------
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE----PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE------- 287 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 287 (547)
....+|..++......|+.+.|..+++.= ...+.+ .+-.-+..-+.-+...|+.+....++-.+..+-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E-~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELE-PRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcC-CCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888999999999888643 222211 122234455666777788777777766655431
Q ss_pred ----CCCchhHHHHHHH--------HHHhcCCHHHHHHHHhc-CC-----CCCChhhHHHHHHHHHhcCC----------
Q 044812 288 ----LNHDVSLCNALID--------MYSKCGSLDCARRVFED-SS-----FNKDAITWSSIVSGYGLHGK---------- 339 (547)
Q Consensus 288 ----~~~~~~~~~~l~~--------~~~~~g~~~~A~~~~~~-~~-----~~~~~~~~~~li~~~~~~~~---------- 339 (547)
.+.....|.-+++ .+...++-..+..-|.- -+ +.+-..........+.+...
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 1222223332222 01112222222222211 00 01111111222333333322
Q ss_pred hHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 044812 340 GHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFI 418 (547)
Q Consensus 340 ~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 418 (547)
..+-+.+.+.+... |..-...+.+--+..+...|+..+|.++-++.. -||...|-.-+.+++..+++++-+++-
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 11112222222221 222333445555666777888888888866653 578888888889999999999988888
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 419 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
+... .+.-|.-++.+|.+.|+.++|.+.+-+... +.....+|.+.|++.+|.+..-+
T Consensus 739 kskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 8774 245577788999999999999988766422 22678899999999999887544
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.67 E-value=0.00019 Score=50.34 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=51.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|.+.+++++|.++++++++.+|.++..+...+.++.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567889999999999999999999999999999999999999999999999987654
No 174
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.64 E-value=0.00078 Score=63.90 Aligned_cols=120 Identities=13% Similarity=0.027 Sum_probs=87.6
Q ss_pred CCCChHHHHhHHHHhhccCCchhHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhH
Q 044812 253 IEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK--ELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITW 327 (547)
Q Consensus 253 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~ 327 (547)
.+.+...+..+++.+....+++.+..++-..... ....-..|..++++.|.+.|..+.++.+++. -|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4456666777777777777777777777776654 2223344556888888888888888888875 5677888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 372 (547)
|.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888887777666767766666665544
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.62 E-value=0.00078 Score=49.85 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=49.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGN 442 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 442 (547)
+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 3344444555555555555554321 122344445555555556666666666554 2222 23455566666666666
Q ss_pred HHHHHHHHHHHHhhCC
Q 044812 443 SEMQDLAYKSLIQLEP 458 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~ 458 (547)
.+.|...++++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666665554
No 176
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.61 E-value=0.00061 Score=64.59 Aligned_cols=121 Identities=10% Similarity=0.025 Sum_probs=96.6
Q ss_pred hCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC-C-----CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcc
Q 044812 49 LGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-K-----DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDF 122 (547)
Q Consensus 49 ~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 122 (547)
++.+.++.....+++.+....+.+.+..++-+... | -..+.+++++.|.+.|..++++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 44566777788888888888888888887776653 2 23456789999999999999999999999999999999
Q ss_pred hHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044812 123 TLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKC 169 (547)
Q Consensus 123 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 169 (547)
|++.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888777666666666555555555
No 177
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.60 E-value=0.11 Score=52.90 Aligned_cols=119 Identities=8% Similarity=0.140 Sum_probs=69.4
Q ss_pred HHHHHHHHhccCcHH---HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCC---CCCHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLIN---EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV---EPSPSIWGALVS 435 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~l~~ 435 (547)
.+.|++.|-+.++.. +|+-+++...... +.|..+--.++..|.-.|-+..|.++|+.+.+ +.|..-|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 345666777776654 4445555444321 22444555677888888888888888888843 33433332 334
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
.+...|++..+...+......-..+..---.++..-.+.|.+....+.
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em 563 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEM 563 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHH
Confidence 556677888888888887776433322223334444455666555554
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00025 Score=62.10 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=77.4
Q ss_pred HHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHH
Q 044812 403 DMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV 480 (547)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 480 (547)
.-+.+.+++++|+..|.+. .+.| |.+.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456788999999999987 5666 6667788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 044812 481 AELRTMMKD 489 (547)
Q Consensus 481 ~~~~~~m~~ 489 (547)
++.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887654
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.56 E-value=0.036 Score=49.25 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=38.8
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh-HH---HHhHHHHhhccCCchhHHHHHHHHHHcC
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK-VS---LVSVLPTCSSLIGLSGGKQIHGFAIRKE 287 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 287 (547)
+...+-.....+...|++++|.+.|+.+ .. .-|+. .. ...+..++.+.++++.|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l-~~--~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEAL-DN--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3333444566667788888888888887 33 22222 11 2344455666666666666666666553
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0055 Score=55.94 Aligned_cols=133 Identities=12% Similarity=0.124 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA-CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 457778888888888899999999888543 2233334333333 333567777999999988764 456777888888
Q ss_pred HhHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 404 MLGRAGQLDRALDFIKTM-PVEPSP----SIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 888999999999999886 222333 489999988889999999999999998887764
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.51 E-value=0.0017 Score=48.00 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=57.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 329 SIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDIITIVGVLSACGRSG--------LINEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 329 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.+... +++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHH
Confidence 345556666888888888888888888 888888888888765432 344567778888766 7888888888
Q ss_pred HHHHHhHh
Q 044812 400 CVVDMLGR 407 (547)
Q Consensus 400 ~l~~~~~~ 407 (547)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88776654
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.001 Score=60.65 Aligned_cols=129 Identities=9% Similarity=0.109 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR-AGQLDRALDFIKTM--PVEPSPSIWGALVSA 436 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 436 (547)
.+|..+++..-+.+..+.|..+|.+..+.. ..+..+|-..+..-.+ .++.+.|..+|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467788888888889999999999998542 2344555555555333 56777799999987 344577889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENP---SNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+...|+.+.|..+|++++..-|.+. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998755443 58999999999999999999999988764
No 183
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.004 Score=57.08 Aligned_cols=164 Identities=8% Similarity=0.073 Sum_probs=110.1
Q ss_pred CChhhHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHHHHhcCCCCchhHH
Q 044812 322 KDAITWSSIV-SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA--CGRSGLINEGLEIYNSVINTYRIKPTTEIC 398 (547)
Q Consensus 322 ~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (547)
|....|-.+- .++...|++++|..+--...+.. + ...+..++++ +-..++.+.|...|++.. .+.|+...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~s 239 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKS 239 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhH
Confidence 3334444443 45667788888887766665532 2 1223333333 445677888888888776 445553322
Q ss_pred HH-------------HHHHhHhcCCHHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 399 AC-------------VVDMLGRAGQLDRALDFIKTM-P-----VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 399 ~~-------------l~~~~~~~g~~~~A~~~~~~~-~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.. =..-..+.|++..|.+.+.+. . .+|+...|.....+..+.|+.++|+.--+++++++|.
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 11 123345778888888888876 3 3345666777777778889999999998988888887
Q ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
-...|..-+.++...++|++|.+-++...+..
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788888888888899999988888765443
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.0022 Score=51.53 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=75.6
Q ss_pred HHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHH
Q 044812 401 VVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 478 (547)
...-+...|++++|..+|+-+ ... -+..-|..|..++-..+++++|+..|..+..++++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999876 222 355667888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 044812 479 AVAELRTMMKD 489 (547)
Q Consensus 479 ~A~~~~~~m~~ 489 (547)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 185
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.42 E-value=0.0025 Score=51.95 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH-----hCCCccCCc
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK-----DRGLKKSPG 497 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 497 (547)
.....++..+...|+++.|..+.++++..+|.+...|..++.+|...|+..+|.++|+++. +.|+.|++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3556677888899999999999999999999999999999999999999999999999873 468877764
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.41 E-value=0.032 Score=49.59 Aligned_cols=176 Identities=9% Similarity=0.021 Sum_probs=102.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC-CCCCChh-h---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 297 ALIDMYSKCGSLDCARRVFEDS-SFNKDAI-T---WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
.....+...|++++|.+.|++. ..-|+.. . .-.++.+|.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3445556678888888888763 1123322 1 234556777888888888888888775322122233333333221
Q ss_pred --c------------------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 044812 372 --S------------------GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWG 431 (547)
Q Consensus 372 --~------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 431 (547)
. ....+|...|+.+++++ |+. .-..+|...+..+...--. --.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~-~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAK-YEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHH-HHH
Confidence 1 11234555555555542 332 2223333333222100000 111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENP---SNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+..-|.+.|.+..|..-++.+++.-|..+ .+...++.+|...|..++|.++...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 355668899999999999999999876654 4566788999999999999998876643
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0033 Score=52.57 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=59.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC--CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 044812 86 VYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP--DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163 (547)
Q Consensus 86 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 163 (547)
...|..+...+...|++++|+..|+........| ...++..+..++...|++++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666666777788888888877776543222 12356667777777788888888777777653 23344455555
Q ss_pred HHHH-------hcCChHHHHHHhcc
Q 044812 164 SMYV-------KCGKFSECLNLFDE 181 (547)
Q Consensus 164 ~~~~-------~~g~~~~A~~~~~~ 181 (547)
.++. ..|+++.|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 66666655555443
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.17 Score=50.09 Aligned_cols=178 Identities=10% Similarity=-0.013 Sum_probs=89.6
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCC-CCcchHHHHHHHHH----------hcCChhHHHHHHHHhhhCCCCCC
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-KDVYLYNSLINGYV----------KNHGHNEALELFSNMYYSNVSPD 120 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~----------~~~~~~~A~~~~~~m~~~~~~p~ 120 (547)
.|.+..|..|.......-.++.|+..|-+... +.+..-..|-..+. --|++++|.++|-+|-++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 57777887777777777777777777766544 22211111111111 13667777777766655432
Q ss_pred cchHHHHHHHHccCCCcHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHc
Q 044812 121 DFTLATISKLSGEIKDLNVGMLIHGLSIKI-GFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199 (547)
Q Consensus 121 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 199 (547)
.+....+.|++-.+.++++.--.. +-..-...++.+...+.....|++|.+.+..-... ...+.++.+
T Consensus 766 ------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~ 834 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYR 834 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHH
Confidence 244455556665555544321000 00011235566666666666666666666543211 112333333
Q ss_pred CCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 200 ~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
..++++ ...+...++ .+....-.+..++...|.-++|.+.|-+.
T Consensus 835 le~f~~---LE~la~~Lp-e~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 835 LELFGE---LEVLARTLP-EDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHhhhh---HHHHHHhcC-cccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 333333 222222222 24444555666666666666666666443
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.37 E-value=0.01 Score=58.87 Aligned_cols=135 Identities=18% Similarity=0.151 Sum_probs=98.9
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhc--------CCHHHHHHHHH
Q 044812 354 GSKPDIITIVGVLSACGR--S---GLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRA--------GQLDRALDFIK 419 (547)
Q Consensus 354 g~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 419 (547)
+.+.|...|...+++... . +....|..+|++..+. .|+ ...|..+..++... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 356678888888887433 2 3477899999999865 665 44455444433222 12345555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 420 TM---P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 420 ~~---~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
+. + ...+...|..+.-.+...|++++|...++++++++| +...|..++.++...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43 1 233557788887777788999999999999999999 578999999999999999999999999876654
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.36 E-value=0.0021 Score=57.45 Aligned_cols=84 Identities=8% Similarity=0.067 Sum_probs=48.0
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHcCCCH
Q 044812 406 GRAGQLDRALDFIKTM-PVEPSP----SIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN---PSNYVSLSNLYASSRRW 477 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 477 (547)
.+.|++++|...|+.+ ...|+. ..+..++.+|...|++++|...|+.+++..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4445555555555554 222322 344556666666666666666666666665543 33444455666666667
Q ss_pred HHHHHHHHHHHh
Q 044812 478 DAVAELRTMMKD 489 (547)
Q Consensus 478 ~~A~~~~~~m~~ 489 (547)
++|.++++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 777766666654
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.36 E-value=0.0043 Score=47.77 Aligned_cols=57 Identities=16% Similarity=-0.021 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPE---NPSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
.+-.+...+...|++++|+.++++.....|+ +......++.++...|+.++|++.+-
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3334445555555555555555555544444 33334444445555555555555443
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.35 E-value=0.00066 Score=46.89 Aligned_cols=65 Identities=15% Similarity=0.292 Sum_probs=50.1
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHG-NSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 458 (547)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777788888888888888776 3445 4557888888888888 68899999998888876
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.00029 Score=48.54 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=28.7
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPS 428 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 428 (547)
..|++++|.++|+++.... +-+...+..++.+|.+.|++++|..+++++ ...|+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 3455666666666655431 224445555555555555555555555555 2334433
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.32 E-value=0.0081 Score=55.09 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=29.0
Q ss_pred HccCCCcHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCChHHHHHHh
Q 044812 131 SGEIKDLNVGMLIHGLSIKIGFVVDV----ILANSLMSMYVKCGKFSECLNLF 179 (547)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~ 179 (547)
+++.|+......+|+..++.|-. |. .+|..|.++|.-.+++++|++.-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 45666666666666666666522 32 34556666677777777776653
No 195
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.29 E-value=0.00019 Score=41.00 Aligned_cols=34 Identities=32% Similarity=0.642 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHH
Q 044812 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482 (547)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 482 (547)
+|+++++.+|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
No 196
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.29 E-value=0.011 Score=47.26 Aligned_cols=106 Identities=9% Similarity=-0.048 Sum_probs=55.3
Q ss_pred HHHHHhhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcC
Q 044812 209 SRRVFDQMK-RRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287 (547)
Q Consensus 209 a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 287 (547)
.+..+..+. +.+......+...+...|++++|.++|+-. -. +.|
T Consensus 22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L-~~--~Dp-------------------------------- 66 (157)
T PRK15363 22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLL-TI--YDA-------------------------------- 66 (157)
T ss_pred cHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH--hCc--------------------------------
Confidence 344444444 444455555566666777777777777665 22 222
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 288 LNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
.+..-|..|.-++-..|++++|+..|.. +. +-|+..+-.+..++...|+.+.|.+.|+..+.
T Consensus 67 --~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 67 --WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred --ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233344455555555555555555554 22 23344455555555555666666555555443
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.24 E-value=0.0021 Score=53.88 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=64.7
Q ss_pred CCCcchHHHHHHHHHhc-----CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCC----------------CcHHHH
Q 044812 83 HKDVYLYNSLINGYVKN-----HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK----------------DLNVGM 141 (547)
Q Consensus 83 ~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------------~~~~a~ 141 (547)
..+-.+|..++..+.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+.. +.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34555666666666543 455556666777777777777788888777765422 456788
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044812 142 LIHGLSIKIGFVVDVILANSLMSMYVKCGK 171 (547)
Q Consensus 142 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 171 (547)
+++++|...|+-||..++..|++.|++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999877665
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.20 E-value=0.00071 Score=41.60 Aligned_cols=42 Identities=21% Similarity=0.465 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
.+|..+..+|...|++++|+++|+++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788999999999999999999999999999998888764
No 199
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.20 E-value=0.2 Score=47.07 Aligned_cols=382 Identities=10% Similarity=0.062 Sum_probs=194.5
Q ss_pred cCchHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCCchhHHHHhccCCC------------------CCcchHHHHH
Q 044812 34 RSLKLTKQSHSQILSLGHISNPFVSTKLITA--YALCGQPTQSQLVFNSIQH------------------KDVYLYNSLI 93 (547)
Q Consensus 34 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~ll 93 (547)
.+++.....+....+.. | ...|-.|..+ +-+.+.+.+|.+.+..... ++...-+..+
T Consensus 59 ~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a 135 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEA 135 (549)
T ss_pred hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHH
Confidence 34555555555555542 3 2333444443 3467899999988865432 2223345667
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCC----CCCcchHHHHHHHHccC--------CC-------cHHHHHHHHHHHHh----
Q 044812 94 NGYVKNHGHNEALELFSNMYYSNV----SPDDFTLATISKLSGEI--------KD-------LNVGMLIHGLSIKI---- 150 (547)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~--------~~-------~~~a~~~~~~~~~~---- 150 (547)
.++...|++.++..+++.|...=. .-+..+|+.++-.++++ .. ++-+.-+..++...
T Consensus 136 ~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~ 215 (549)
T PF07079_consen 136 HSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRP 215 (549)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhch
Confidence 788899999999999998876533 36888888855554432 11 22222233333222
Q ss_pred --CCCCchhHHHHHHHHHHhcC-----ChHHHHHHhccCC-CCChh-hHHHHHHHHHcCCCchhHHHHHHHHhh------
Q 044812 151 --GFVVDVILANSLMSMYVKCG-----KFSECLNLFDEMP-QRNVG-SWNVRISGHASSGDFSLVVRSRRVFDQ------ 215 (547)
Q Consensus 151 --g~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~a~~a~~~~~~------ 215 (547)
.+-|.......++.-..-.. -+-.+.+.++.-- .|+-. ....++..+.. +.+. +..+.+.
T Consensus 216 Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~---~~~~ce~ia~~~i 290 (549)
T PF07079_consen 216 YEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQ---VGHFCEAIASSKI 290 (549)
T ss_pred HHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHH---HHHHHHHHHHHhH
Confidence 13344444444544333221 2334445553322 23221 22233333333 2333 2222222
Q ss_pred --cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHH-------HHhh-ccCCchhHH---HHHHH
Q 044812 216 --MKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL-------PTCS-SLIGLSGGK---QIHGF 282 (547)
Q Consensus 216 --~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll-------~~~~-~~~~~~~a~---~~~~~ 282 (547)
+.+.=+.++..++...++.++..+|.+.+.-+ .. +.|+...-..++ +..+ ...++..-. .++..
T Consensus 291 ~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL-~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 291 EKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL-KI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-Hh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 22334567888999999999999999888765 33 455443222221 1111 111122222 22222
Q ss_pred HHHcCCCCchhHHHHHH---HHHHhcCC-HHHHHHHHhcC-CC-CCChhhHHHHH----HHHHh---cCChHHHHHHHHH
Q 044812 283 AIRKELNHDVSLCNALI---DMYSKCGS-LDCARRVFEDS-SF-NKDAITWSSIV----SGYGL---HGKGHEAVLLYNK 349 (547)
Q Consensus 283 ~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~-~~-~~~~~~~~~li----~~~~~---~~~~~~a~~~~~~ 349 (547)
....++... ....-|+ .-+-+.|. -++|+++++.. .+ .-|..+-|... .+|.+ ...+.+-+.+-+-
T Consensus 368 ~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 368 IQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 222222111 1111122 22333444 67777777652 22 22333333222 22222 1223333444444
Q ss_pred HHHcCCCCC----HHHHHHHHHH--HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCC
Q 044812 350 MVCLGSKPD----IITIVGVLSA--CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPV 423 (547)
Q Consensus 350 m~~~g~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 423 (547)
..+.|++|- ...-+.|.++ +...|++.++.-.-..+. .+.|++.+|..+.-++....++++|..++..+|
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP- 522 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP- 522 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 456677663 3334444443 456677777776655554 457788888877777777788888888888876
Q ss_pred CCCHHHHHH
Q 044812 424 EPSPSIWGA 432 (547)
Q Consensus 424 ~p~~~~~~~ 432 (547)
|+..+++.
T Consensus 523 -~n~~~~ds 530 (549)
T PF07079_consen 523 -PNERMRDS 530 (549)
T ss_pred -CchhhHHH
Confidence 56555554
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.13 E-value=0.092 Score=42.95 Aligned_cols=136 Identities=12% Similarity=0.073 Sum_probs=84.6
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhH
Q 044812 318 SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI 397 (547)
Q Consensus 318 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 397 (547)
..+.|++..-..|..+....|+..+|...|.+...--+.-|......+.++....+++..|...++.+.+-+.-.-++..
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 33355666666677777777887888777777765444556667777777777777777777777777654211113445
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
...+...|...|+.++|...|+.. ...|+...-.-...-+.+.|+..++..-+..+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 556677777778877777777765 33455443333334455666655555443333
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.11 E-value=0.0078 Score=55.18 Aligned_cols=277 Identities=13% Similarity=0.060 Sum_probs=150.2
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCcch----HHHHHHHHccCCCcHHHHHHHHHHHH----hCCC-CchhHHHHHHH
Q 044812 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFT----LATISKLSGEIKDLNVGMLIHGLSIK----IGFV-VDVILANSLMS 164 (547)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~l~~ 164 (547)
.-+++.|+.+..+.+|+..++.|.. |..| |..|.++|.-.+++++|+++...=+- .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478899999999999999987743 4443 56677788888899999887643211 1100 01122233444
Q ss_pred HHHhcCChHHHHHHhccCCC-----C----ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCC
Q 044812 165 MYVKCGKFSECLNLFDEMPQ-----R----NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNG 235 (547)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 235 (547)
.+--.|.+++|...-.+-.. . ....+..+...|-..|+.-...... +...++.=+. .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe---------e~g~f~~ev~-----~ 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE---------EKGAFNAEVT-----S 169 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh---------hcccccHHHH-----H
Confidence 55556777776654333211 0 1112333444444444322100000 0011111000 0
Q ss_pred CHHHHHHHHHHc---hhcCCC-CCChHHHHhHHHHhhccCCchhHHHHHHHHHH----cCCC-CchhHHHHHHHHHHhcC
Q 044812 236 DLDEALVLFLEM---QLKDRI-EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR----KELN-HDVSLCNALIDMYSKCG 306 (547)
Q Consensus 236 ~~~~A~~~~~~m---~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g 306 (547)
.++.|.++|.+= ..+.|- -.....|..+...|.-.|+++.|....+.-.. -|-. .....+..+.+++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 122333333211 011111 11234566666777777888888776654332 2211 12345667788888888
Q ss_pred CHHHHHHHHhc-------CCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHhcc
Q 044812 307 SLDCARRVFED-------SSFNKD--AITWSSIVSGYGLHGKGHEAVLLYNKMVCL----G-SKPDIITIVGVLSACGRS 372 (547)
Q Consensus 307 ~~~~A~~~~~~-------~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~~~~l~~~~~~~ 372 (547)
+++.|.+.|+. ++ ... ..+..+|...|.-..++++|+.++.+-... + ..-....+.+|..++...
T Consensus 250 ~fe~A~ehYK~tl~LAielg-~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELG-NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhc-chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 88888888763 34 333 234566777777777888888777654321 1 112356778888888888
Q ss_pred CcHHHHHHHHHHHH
Q 044812 373 GLINEGLEIYNSVI 386 (547)
Q Consensus 373 g~~~~a~~~~~~~~ 386 (547)
|..++|+.+.+...
T Consensus 329 g~h~kAl~fae~hl 342 (639)
T KOG1130|consen 329 GEHRKALYFAELHL 342 (639)
T ss_pred hhHHHHHHHHHHHH
Confidence 88888877665543
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.09 E-value=0.23 Score=45.74 Aligned_cols=247 Identities=18% Similarity=0.204 Sum_probs=163.0
Q ss_pred HHHHHCCCHHHHHHHHHHchhcCCCCCChH--HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 044812 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKV--SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306 (547)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 306 (547)
++-.-.|+++.|.+-|+.| .. .|... -...+.-.-.+.|+.+.|.++-+..-..- +.-.......+...|..|
T Consensus 128 Qaal~eG~~~~Ar~kfeAM-l~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 128 QAALLEGDYEDARKKFEAM-LD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAG 202 (531)
T ss_pred HHHHhcCchHHHHHHHHHH-hc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcC
Confidence 3445679999999999998 33 12211 12333334457788888888877776654 333456778899999999
Q ss_pred CHHHHHHHHhcC----CCCCChhh--HHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCcHH
Q 044812 307 SLDCARRVFEDS----SFNKDAIT--WSSIVSGYG---LHGKGHEAVLLYNKMVCLGSKPDIIT-IVGVLSACGRSGLIN 376 (547)
Q Consensus 307 ~~~~A~~~~~~~----~~~~~~~~--~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~ 376 (547)
+++.|+++++.. .+.++..- -..|+.+-. -..+...|...-.+..+ +.||... -..-..++.+.|+..
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchh
Confidence 999999999752 23455432 222332211 12245555555555444 5676433 334456788999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM----PVEP-SPSIWGALVSASVMHGNSEMQDLAYK 451 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 451 (547)
++-.+++.+-+. .|.+.++... .+.+.|+ .+.+-+++. ..+| +..+...+..+....|++..|..--+
T Consensus 281 Kg~~ilE~aWK~---ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 281 KGSKILETAWKA---EPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred hhhhHHHHHHhc---CCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999865 5655554322 2345554 333333322 2345 45577788889999999999999988
Q ss_pred HHHhhCCCCCchHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Q 044812 452 SLIQLEPENPSNYVSLSNLYASS-RRWDAVAELRTMMKDR 490 (547)
Q Consensus 452 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 490 (547)
.+.+..|. ...|..|.+.-... |+-.++...+-+..+.
T Consensus 354 aa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 354 AAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88888884 56888999888765 9999999998876654
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.09 E-value=0.007 Score=50.89 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=62.1
Q ss_pred CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------CcHHHHH
Q 044812 321 NKDAITWSSIVSGYGL-----HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS----------------GLINEGL 379 (547)
Q Consensus 321 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------------g~~~~a~ 379 (547)
..+..+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 5566666666666654 456666777778888888888888888888876542 2235577
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhHhcCC
Q 044812 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 410 (547)
+++++|.. +|+.||.+++..+++.+++.+.
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 77777744 4778888888777777766553
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.07 E-value=0.0033 Score=59.26 Aligned_cols=65 Identities=11% Similarity=0.027 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN---YVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+...|+.+..+|...|++++|+..|+++++++|++... |..++.+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567777777777777777777777777777766643 777777777777777777777776654
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.012 Score=52.63 Aligned_cols=102 Identities=9% Similarity=0.123 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALV 434 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 434 (547)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ ...|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556788888888888876632111 1245666777888888888888888776 22232 34566667
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 435 SASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
.++...|+.+.|...|+++++..|.+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7788899999999999999999887653
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.06 E-value=0.076 Score=49.60 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCCh------hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044812 294 LCNALIDMYSKCGSLDCARRVFEDSSFNKDA------ITWSSIVSGYGL---HGKGHEAVLLYNKMVCLGSKPDIITIVG 364 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 364 (547)
+...++-.|....+++..+++++.+...|+. ..-....-++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3344555677788888888888876533322 112233445556 7888888888888666666777778777
Q ss_pred HHHHHhc---------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC-H---HHHHHHH---HhC-------
Q 044812 365 VLSACGR---------SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ-L---DRALDFI---KTM------- 421 (547)
Q Consensus 365 l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~---~~A~~~~---~~~------- 421 (547)
+...|-. ....++|...|.+.- .+.|+...=-.++..+...|. . .+..++- ...
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7765421 223566777766554 334443221112222222232 1 1111211 111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 422 PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 422 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
....+-..+.+++.++.-.|+.++|.+..+++.+..|+
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 12245556677888888888888888888888887654
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.23 Score=49.18 Aligned_cols=131 Identities=9% Similarity=-0.005 Sum_probs=64.8
Q ss_pred cccCCcccccccccCCcch---------HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhH
Q 044812 4 SSARNTFALVTSRNYTSAT---------VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQS 74 (547)
Q Consensus 4 ~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A 74 (547)
++|.++.+.-|++.+.+.. +...-.++-+||++.-..-+-+ +... .+...-.+=+. +--|++++|
T Consensus 680 edA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i---~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 680 EDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTI---HSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhh---hhHHHHhHhHh--hhhcchhHh
Confidence 4555555555555544332 2333456778888776532211 1110 01111111122 224888999
Q ss_pred HHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCcchHHHHHHHHccCCCcHHHHHHHH
Q 044812 75 QLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS-NVSPDDFTLATISKLSGEIKDLNVGMLIHG 145 (547)
Q Consensus 75 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 145 (547)
+++|-.+.++|.. +....+.|+|-...++++.--.. +-..-...|+.+...++....++.|.+++.
T Consensus 754 ek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 754 EKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888776643 45556667776666555431100 000012345555555555555555555554
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.03 E-value=0.03 Score=43.19 Aligned_cols=91 Identities=15% Similarity=0.246 Sum_probs=56.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhH
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPD--IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLG 406 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 406 (547)
+..++-..|+.++|..+|++....|+... ...+..+...+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677788888888888877776554 33555666677777888888888877765421101 1222222344566
Q ss_pred hcCCHHHHHHHHHh
Q 044812 407 RAGQLDRALDFIKT 420 (547)
Q Consensus 407 ~~g~~~~A~~~~~~ 420 (547)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 67777777776644
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.98 E-value=0.0029 Score=44.19 Aligned_cols=63 Identities=16% Similarity=0.360 Sum_probs=50.5
Q ss_pred HHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 403 DMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
..|.+.+++++|.+.++++ ...| +...|.....++...|++.+|.+.++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888999999998887 4445 4557788888899999999999999999999987765443
No 210
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.33 Score=45.09 Aligned_cols=268 Identities=10% Similarity=0.019 Sum_probs=129.9
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 044812 94 NGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFS 173 (547)
Q Consensus 94 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 173 (547)
..+.+..++..|+..+....+.... +..-|..-...+...++++.+.--.+.-++.. +.....+...-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 3455566677777777776665422 22233333334444455554443333333221 111223333444455555555
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC-----CChhhHHHH-HHHHHHCCCHHHHHHHHHHc
Q 044812 174 ECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR-----RNVYAWTAM-INGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~-----~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m 247 (547)
+|.+.++.-. .+ ++..++..++...+ |....|..+ ..++.-.|++++|.+.--..
T Consensus 135 ~A~~~~~~~~-----~~--------------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 135 EAEEKLKSKQ-----AY--------------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHHhhhhh-----hh--------------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 5555554111 00 11112222222221 222333332 24455566666666655544
Q ss_pred hhcCCCCCChHHHHhHH--HHhhccCCchhHHHHHHHHHHcCCCCc-----------hhHHHHHHHHHHhcCCHHHHHHH
Q 044812 248 QLKDRIEPNKVSLVSVL--PTCSSLIGLSGGKQIHGFAIRKELNHD-----------VSLCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 248 ~~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~ 314 (547)
.+. .++ ..+...+ .++.-.++.+.+...|++.+..+.... ...+..=.+-..+.|++..|.+.
T Consensus 196 -lkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 196 -LKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred -Hhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 221 111 1112222 223344555666666655554431110 11122223445677888888888
Q ss_pred Hhc-CCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044812 315 FED-SSFNK-----DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 315 ~~~-~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
|.+ +++.| +...|........+.|+..+|+.--++.... .|. ...|..-..++...+++++|.+-|++..+
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 865 44444 4445666667777888888888877776552 222 12233333456667788888888887765
Q ss_pred h
Q 044812 388 T 388 (547)
Q Consensus 388 ~ 388 (547)
.
T Consensus 350 ~ 350 (486)
T KOG0550|consen 350 L 350 (486)
T ss_pred h
Confidence 4
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.058 Score=52.67 Aligned_cols=221 Identities=10% Similarity=0.070 Sum_probs=104.8
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHhccCCC-----------CCcchHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCC
Q 044812 53 SNPFVSTKLITAYALCGQPTQSQLVFNSIQH-----------KDVYLYNSLINGYVKNHG--HNEALELFSNMYYSNVSP 119 (547)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~p 119 (547)
|.+..+..-+-.|...|.+++|.++----.- .+...++..-.+|.+-++ +-+.+.-+++|+++|-.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 3444444555556666777776653211110 122223333444544433 334445556677777666
Q ss_pred CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHc
Q 044812 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199 (547)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 199 (547)
+... +...++-.|.+.+|.++|.+ .|.. |..+..|.....+|.|.+++..-... .-..|++-
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~---eKKmL~RK--- 695 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGDPK---EKKMLIRK--- 695 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCChH---HHHHHHHH---
Confidence 6543 33455666777777766643 3322 23344444555555555554332210 00011100
Q ss_pred CCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHH-------------HHchhcCCCCCChHHHHhHHHH
Q 044812 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLF-------------LEMQLKDRIEPNKVSLVSVLPT 266 (547)
Q Consensus 200 ~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~-------------~~m~~~~~~~p~~~~~~~ll~~ 266 (547)
-.+......+|. +....+...|+.++|..+. +++ -..+..+...+..-
T Consensus 696 ---------RA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl-----d~~ere~l~~~a~y 756 (1081)
T KOG1538|consen 696 ---------RADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL-----DKAEREPLLLCATY 756 (1081)
T ss_pred ---------HHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc-----chhhhhHHHHHHHH
Confidence 000111111221 1223334445555554432 222 12233344444444
Q ss_pred hhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 044812 267 CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 319 (547)
+.+...+..|.++|..|-+. ..+++.....+++++|.++-++.+
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc
Confidence 55556666777777665432 346677777888888888887754
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.92 E-value=0.37 Score=45.31 Aligned_cols=91 Identities=8% Similarity=0.007 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 044812 39 TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV---YLYNSLINGYVKNHGHNEALELFSNMYYS 115 (547)
Q Consensus 39 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 115 (547)
-.++-+.+.+. +.|..+|-+|++.+...|..++.+++++++..|-+ .+|..-+.+-...++++....+|.+.+..
T Consensus 28 ~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 28 ELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 34555555444 67899999999999999999999999999998753 57888888888889999999999998876
Q ss_pred CCCCCcchHHHHHHHHcc
Q 044812 116 NVSPDDFTLATISKLSGE 133 (547)
Q Consensus 116 ~~~p~~~~~~~l~~~~~~ 133 (547)
... ...|..-+.-..+
T Consensus 106 ~l~--ldLW~lYl~YIRr 121 (660)
T COG5107 106 SLN--LDLWMLYLEYIRR 121 (660)
T ss_pred hcc--HhHHHHHHHHHHh
Confidence 543 4455554444333
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.91 E-value=0.082 Score=40.47 Aligned_cols=141 Identities=20% Similarity=0.207 Sum_probs=83.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHH
Q 044812 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR 413 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (547)
..-.|..++..++..+...+ .+..-++.+|--....-+-+-..+.++.+-+-+ |. ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcchHH
Confidence 34457777777777777663 245556665544433334444444444443322 22 22344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 414 ALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 414 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
...-+-.++ .+....+..+.++...|+-+.-.+++..+.+.+..+|.....++.+|.+.|+..++.+++++..++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444432 344556677788899999999999999998777778999999999999999999999999999999975
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.91 E-value=0.0019 Score=45.89 Aligned_cols=61 Identities=10% Similarity=0.119 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC---CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQL----EPE---NPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
.+++.+...|...|++++|+..|+++++. ++. ...++..++.++...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36777777788888888888888877754 111 24467778888888888888888877654
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.15 Score=50.07 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=49.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHH---------HhhhCCCCCCcchHHHHHHHHccCCCcHH--HHHHHHHHHHhCCCCc
Q 044812 87 YLYNSLINGYVKNHGHNEALELFS---------NMYYSNVSPDDFTLATISKLSGEIKDLNV--GMLIHGLSIKIGFVVD 155 (547)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~A~~~~~---------~m~~~~~~p~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~g~~~~ 155 (547)
..+.+-+..+...|.+++|..+-- .+-.. ..+.-.++..-.+|.+.++..- ...-++++++.|-.|+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 344455556677777777654421 11000 0122334444455655555442 2333456666676666
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC
Q 044812 156 VILANSLMSMYVKCGKFSECLNLFDEMPQ 184 (547)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 184 (547)
... +...++-.|++.+|-++|.+--.
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCc
Confidence 553 44556677888888877766543
No 216
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.83 E-value=0.41 Score=44.42 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=81.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH 440 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 440 (547)
+.+..+.-|...|+...|.++-.+. .+ |+...|...+.+|+..|+|++-..+... +-.+.-|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4445566667778877777765544 43 7888888889999999999888876654 23456788888889999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
|+..+|..+..++ .+..-+..|.+.|+|.+|.+..-+.+
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 9988888887771 23667788889999998888765543
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.83 E-value=0.081 Score=45.75 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=70.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH
Q 044812 329 SIVSGYGLHGKGHEAVLLYNKMVCLGSKP--DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406 (547)
Q Consensus 329 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (547)
.....+...|++.+|...|+.+....... -......++.++.+.|+++.|...++.+++.+.-.|.. -+...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHH
Confidence 33444556666666666666666542111 12334455556666666666666666666554332221 1111111111
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch-----------------HHHHHH
Q 044812 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN-----------------YVSLSN 469 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------~~~l~~ 469 (547)
......... ......+...+|...|+.+++.-|+++.. -..++.
T Consensus 89 ~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110000000 00112223455666666666666665442 234678
Q ss_pred HHHcCCCHHHHHHHHHHHHhC
Q 044812 470 LYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 470 ~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.|.+.|.+..|..-++.+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 899999999999999998764
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.82 E-value=0.13 Score=48.15 Aligned_cols=169 Identities=12% Similarity=0.121 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCchhHHHHhccCCCC-C------cchHHHHHHHHHh---cCChhHHHHHHHHhhhCCCCCCcchHHHHHH
Q 044812 60 KLITAYALCGQPTQSQLVFNSIQHK-D------VYLYNSLINGYVK---NHGHNEALELFSNMYYSNVSPDDFTLATISK 129 (547)
Q Consensus 60 ~l~~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 129 (547)
.++-.|....+++..+++++.+... + ...--...-++-+ .|+.++|++++..+......+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566667777777777766542 1 1111122233344 5667777777766555555566666666655
Q ss_pred HHcc---------CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcC
Q 044812 130 LSGE---------IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200 (547)
Q Consensus 130 ~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 200 (547)
.|-. ...++.|...|.+.-+. .||...--.++..+...|...+...-++++. ..+-...++.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~-------~~l~~llg~k 296 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIG-------VKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHH-------HHHHHHHHhh
Confidence 4421 11234444444443322 2333322222333333333211111111100 0111122233
Q ss_pred CCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhc
Q 044812 201 GDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLK 250 (547)
Q Consensus 201 g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 250 (547)
|..+. ..+-..+.+++.+..-.|++++|.+.++.| .+
T Consensus 297 g~~~~------------~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~-~~ 333 (374)
T PF13281_consen 297 GSLEK------------MQDYWDVATLLEASVLAGDYEKAIQAAEKA-FK 333 (374)
T ss_pred ccccc------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHH-hh
Confidence 33322 345566778888888889999999998888 44
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.085 Score=45.68 Aligned_cols=59 Identities=12% Similarity=0.009 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
+.++..+.-.+.+.-.+..+.+.++...+-+......|.+.-.+.|+.+.|...|+...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444445555555555555554333344444555555555555555555555443
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.81 E-value=0.29 Score=42.31 Aligned_cols=66 Identities=15% Similarity=0.017 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC-ChHHHHhHHHHhhccCCchhHHHHHHHHHHcC
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 287 (547)
...-.....+...|++++|.+.|+.+.......| -......++.++.+.|+++.|...++...+..
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344556677888889999888888833322222 12334555666777777777777777766653
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.21 Score=43.38 Aligned_cols=137 Identities=7% Similarity=0.028 Sum_probs=103.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--------CCCCCHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--------PVEPSPSIWGA 432 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~ 432 (547)
..+.++.++.-.|.+.-....+++.++. ..+.++.....|+..-.+.|+.+.|...|++. +.+.+......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4456667777778888888899998875 44557788888888888999999999999854 12223333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccce
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSW 500 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 500 (547)
....+.-.+++..|...+.++.+.+|.++..-+.-+-++.-.|+..+|++.++.|+... |.+....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 44456667889999999999999999999888888888888899999999999998764 3344443
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.02 Score=52.80 Aligned_cols=61 Identities=8% Similarity=0.021 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
+++.|.-+|.+.+++..|++.-+++++.+|+|......-+.+|...|+++.|+..|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555566666666666665555544
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.62 E-value=0.0041 Score=44.13 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=36.1
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-------P-VEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
.+++.+...|...|++++|++.|++. + ..|+ ..++..+..++...|++++|++.++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34555555555556655555555544 1 1122 346677777777777888887777777653
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.60 E-value=0.035 Score=43.24 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 370 (547)
..++..++.++++.|+++....+++.. ++..+... ..+. .-......|+..+..+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 456667777777777777777777652 22211100 0000 1122346788888888888888
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
..|++..|.++.+.+.+.++++.+..+|..|++-.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888888777777887777643
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.043 Score=50.74 Aligned_cols=96 Identities=11% Similarity=0.131 Sum_probs=80.6
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
..++..+.-++.+.+++.+|+...++. .. .+|.-.+--=..+|...|+++.|+..|+++++.+|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 446777888999999999999998876 33 3566677778899999999999999999999999999999999999888
Q ss_pred cCCCHHHH-HHHHHHHHhC
Q 044812 473 SSRRWDAV-AELRTMMKDR 490 (547)
Q Consensus 473 ~~g~~~~A-~~~~~~m~~~ 490 (547)
+...+.+. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 87776554 8889999643
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=1.1 Score=45.23 Aligned_cols=97 Identities=9% Similarity=0.041 Sum_probs=48.8
Q ss_pred hCCCCChhHHHH-----HHHHHHhcCCchhHHHHhccCCCCCc---chHHHHHHHHHhcCCh--hHHHHHHHHhhhCCCC
Q 044812 49 LGHISNPFVSTK-----LITAYALCGQPTQSQLVFNSIQHKDV---YLYNSLINGYVKNHGH--NEALELFSNMYYSNVS 118 (547)
Q Consensus 49 ~g~~~~~~~~~~-----l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~--~~A~~~~~~m~~~~~~ 118 (547)
-|++.+..-|.+ +++-+...+.+..|+++-..+..|.. ..|.....-+.+..+. +++++..++=...-.
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 355555444433 45556666777777777777766542 2333333333333221 223332222221112
Q ss_pred CCcchHHHHHHHHccCCCcHHHHHHHHH
Q 044812 119 PDDFTLATISKLSGEIKDLNVGMLIHGL 146 (547)
Q Consensus 119 p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 146 (547)
-+..+|..+.+-....|+++-|..+++.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2344566666666667777777666543
No 227
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.18 Score=44.89 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC---CHHHHHHHHHhC-CCCC-CHHHH
Q 044812 356 KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG---QLDRALDFIKTM-PVEP-SPSIW 430 (547)
Q Consensus 356 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 430 (547)
+-|...|..|..+|...|+++.|..-|....+-. .+++..+..+..++..+. ...++..+|+++ ...| |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3367889999999999999999999999887543 345666666666655432 457888889887 4455 45577
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 431 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
..|...+...|++.+|...|+.|++..|++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 77778899999999999999999998876543
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.31 E-value=0.16 Score=40.11 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhCCCCC
Q 044812 443 SEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~ 461 (547)
...|..-|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4456666666666666553
No 229
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.26 E-value=0.97 Score=41.87 Aligned_cols=132 Identities=16% Similarity=0.132 Sum_probs=82.5
Q ss_pred CCCCChhh-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chh
Q 044812 319 SFNKDAIT-WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTE 396 (547)
Q Consensus 319 ~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~ 396 (547)
.+.||... --.-..++.+.|+..++-.+++.+-+....|+.. .+....+.|+ .+..-++...+--.++| +.+
T Consensus 257 KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 257 KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchH
Confidence 34555443 2233467888888888888888888875555532 1222344454 33333444333324455 456
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASV-MHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~ 456 (547)
....+..+-...|++..|..--+.. ...|....|..|...-. ..||-.++...+-+.++-
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6666777777888887776665554 45677777777776554 448888888888877653
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.058 Score=47.35 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=27.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLEPE---NPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
|+.++...|+++.|...|..+.+..|. -|..+..|+.+..+.|+.++|..+|+.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444555555555555555555444322 23334444555555555555555555443
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.09 E-value=0.068 Score=46.92 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=64.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM----PVEPS-PSIWGALV 434 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~ 434 (547)
.|+.-+. +.+.|++..|..-|...++.+.-.+ ....+--|.+++...|++++|...|..+ +..|- +..+..|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3455667777777777766542111 2334445677777777777777777655 33332 35667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 435 SASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
.+..+.|+.++|...|+++.+.-|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77788888888888888888887776543
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.02 E-value=0.2 Score=39.48 Aligned_cols=60 Identities=22% Similarity=0.327 Sum_probs=42.1
Q ss_pred HHhHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 403 DMLGRAGQLDRALDFIKTM----PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
....+.|++++|.+.|+.+ +..| ....-..|+.+|.+.+++++|...+++.++++|.++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3345667777777777766 2222 2335566788888888888888888888888877665
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.96 E-value=0.048 Score=51.67 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=42.4
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSP----SIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
+...++.+..+|...|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666777777777777777664 455553 24677777777777777777777777765
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.88 E-value=0.092 Score=40.94 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASV 438 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 438 (547)
..++..++.++++.|+++....+++..- |+.++...- .+. +-..-+..|+..++.+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHHH
Confidence 4455666666666666666666554332 433322110 000 0011134566666666666666
Q ss_pred HcCCHHHHHHHHHHHHhhC--CCCCchHHHHHH
Q 044812 439 MHGNSEMQDLAYKSLIQLE--PENPSNYVSLSN 469 (547)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~ 469 (547)
..|++..|.++.+...+.- |-+...|..|+.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 6666666666666655543 222334444443
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.27 Score=44.28 Aligned_cols=112 Identities=15% Similarity=0.041 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhH----HHHHHHHhHhcCCHHH
Q 044812 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI----CACVVDMLGRAGQLDR 413 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~ 413 (547)
|+..+|...|+++.+. .+-|...+...-.+|...|+...-...++++... ..++... ...+..++..+|-+++
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4444444444444443 2233444444444444455444444444444332 1222221 1222333444555555
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 414 ALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 414 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
|++.-++. .+.| |...-..+...+...|+++++.++..+
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55554443 2222 333444444444445555555544443
No 236
>PRK15331 chaperone protein SicA; Provisional
Probab=95.71 E-value=0.23 Score=40.22 Aligned_cols=88 Identities=6% Similarity=-0.028 Sum_probs=68.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCH
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP--VEPSPSIWGALVSASVMHGNS 443 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 443 (547)
..-+...|++++|..+|+-+..- + .-+..-+..|..++...+++++|...|.... ...|+...-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33456789999999999988653 1 2256677888888889999999999998661 123444556678899999999
Q ss_pred HHHHHHHHHHHh
Q 044812 444 EMQDLAYKSLIQ 455 (547)
Q Consensus 444 ~~a~~~~~~~~~ 455 (547)
+.|...|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999999888
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.70 E-value=1.3 Score=38.77 Aligned_cols=163 Identities=12% Similarity=0.102 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 402 (547)
..|+.- ..-.+.|++++|...|+.+..... +-...+...++.++.+.++++.|+...++..+.++-.|+.. |-..+
T Consensus 36 ~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 36 ELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 344444 445678999999999999987622 11356677778889999999999999999998877777653 22223
Q ss_pred HHhHh-------cCCHHHHHHHHHhC-------C---CCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHH
Q 044812 403 DMLGR-------AGQLDRALDFIKTM-------P---VEPSPSIW------------GALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 403 ~~~~~-------~g~~~~A~~~~~~~-------~---~~p~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
.++.. ..+...+.+.+..+ | -.||...- ..+.+-|.+.|.+..|..-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 33322 12333444444333 2 22333221 22345678999999999999999
Q ss_pred HhhCCCCCchHH---HHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 454 IQLEPENPSNYV---SLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 454 ~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
++.-|..+.+.. .|..+|.+.|..++|.+.-+-+..
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999888888655 456788999999999987766544
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.57 E-value=0.26 Score=47.92 Aligned_cols=133 Identities=13% Similarity=0.046 Sum_probs=85.5
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 044812 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101 (547)
Q Consensus 22 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 101 (547)
....++..|.+.|-++.|.++-++-.. -.....+.|+++.|.++.+... +...|..|.....++|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 356666666666666666665543322 2455566677777777766655 44578888888888888
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 044812 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181 (547)
Q Consensus 102 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 181 (547)
++-|.+.|++... |..|+-.|...|+.+...++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887653 55666667777887777777777666551 44455556666777777777765
Q ss_pred CC
Q 044812 182 MP 183 (547)
Q Consensus 182 ~~ 183 (547)
..
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.55 E-value=0.93 Score=44.90 Aligned_cols=157 Identities=12% Similarity=0.078 Sum_probs=98.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLG-SKPD-----IITIVGVLSACGR----SGLINEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
+++...-.|+-+.+++.+.+..+.+ +.-. .-.|..++..++. ....+.|.++++.+.++ -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 4444444566666666666554431 2111 1223333333322 45678888888888866 46666554
Q ss_pred HH-HHHhHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHH-HHHH
Q 044812 400 CV-VDMLGRAGQLDRALDFIKTMPV------EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL-SNLY 471 (547)
Q Consensus 400 ~l-~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-~~~~ 471 (547)
.. ...+...|++++|.+.|++... +.....+--+..++...+++++|.+.|.++.+.+.-+...|..+ +-++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33 3456678899999999987521 11234455567778888999999999999988765555555443 4445
Q ss_pred HcCCCH-------HHHHHHHHHHHh
Q 044812 472 ASSRRW-------DAVAELRTMMKD 489 (547)
Q Consensus 472 ~~~g~~-------~~A~~~~~~m~~ 489 (547)
...|+. ++|.+++.+...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 567877 888888887743
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.51 E-value=0.94 Score=44.19 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=60.0
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...|..|.....+.|+++-|.+.|.+. .. +..++-.|...|+.+...++.......| -++...
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af 409 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA-KD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAF 409 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC-T----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh-cC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHH
Confidence 5567888888888888899999888877 32 5666666777777777777777766665 255556
Q ss_pred HHHHhcCCHHHHHHHHhcCC
Q 044812 300 DMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~ 319 (547)
.++.-.|++++..+++.+.+
T Consensus 410 ~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 410 QAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHcC
Confidence 66666788888888887766
No 241
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.50 E-value=0.054 Score=30.72 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
..|..+..++...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677788888888888888888888888764
No 242
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.46 E-value=0.04 Score=31.33 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.+|..++.++...|++++|+..|+++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888875
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=1.6 Score=37.77 Aligned_cols=162 Identities=12% Similarity=0.110 Sum_probs=86.0
Q ss_pred CHHHHHHHHhcCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 044812 307 SLDCARRVFEDSSFNKDA-ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSV 385 (547)
Q Consensus 307 ~~~~A~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 385 (547)
.++.|.-+.+++..-+.+ ..|+.-...|..+|.++.|-..+++.-+. ....++++|+++|++.
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqra 136 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRA 136 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHH
Confidence 345555555555422222 23555556677777776666655554321 1122333444444333
Q ss_pred HHhc----CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 386 INTY----RIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-------VEPSP-SIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 386 ~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
..-. ....-...+......+.+...+++|-..+.+-. ..|+. ..|...+-.+....|+..|++.++.-
T Consensus 137 lavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 137 LAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 2210 111123344455566677777777666655441 12333 23445555566677888888888886
Q ss_pred Hhh----CCCCCchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 454 IQL----EPENPSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 454 ~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
-+. +|.+..+...|+.+| ..|+.+++..++.
T Consensus 217 ~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 217 SQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 554 366667777777776 4567666665543
No 244
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.38 E-value=0.12 Score=45.33 Aligned_cols=110 Identities=11% Similarity=0.058 Sum_probs=81.0
Q ss_pred HHHHhccCC--CCCcchHHHHHHHHHhc-----CChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCC-----------
Q 044812 74 SQLVFNSIQ--HKDVYLYNSLINGYVKN-----HGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK----------- 135 (547)
Q Consensus 74 A~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 135 (547)
.+..|.... +++-.+|-..+..+... +..+-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 46677777777776543 456666677888999999999999999999776543
Q ss_pred -----CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHhccCC
Q 044812 136 -----DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF-SECLNLFDEMP 183 (547)
Q Consensus 136 -----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 183 (547)
+-+-+..++++|...|+.||..+-..|+++|.+.+.. .+..++.-.|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 3456788999999999999999999999999887763 33444443443
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=95.36 E-value=0.44 Score=45.52 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=80.6
Q ss_pred ChHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh
Q 044812 339 KGHEAVLLYNKMVC-LGSKPD-IITIVGVLSACGRS---------GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR 407 (547)
Q Consensus 339 ~~~~a~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (547)
..+.|+.+|.+... +.+.|+ ...|..+..++... ....+|.+.-+...+.. +-|......+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 35567778888772 224555 44555555443321 22344555555554321 2255666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH--HHHHHHHcCCCHHHHHHH
Q 044812 408 AGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV--SLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 408 ~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~ 483 (547)
.|+++.|..+|++. ...||.. +|......+.-.|+.++|.+.++++++++|....+-. ..++.|+.. ..++|+.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 67777777777776 4455543 5555566666677777777777777777775433222 222234333 34555555
Q ss_pred HH
Q 044812 484 RT 485 (547)
Q Consensus 484 ~~ 485 (547)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 43
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.30 E-value=1.2 Score=35.72 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (547)
...++..+...+.......+++.+...+ ..+...++.++..+++.+ .....+.++. . .+......++..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHHH
Confidence 3456666666667777777777776665 245666677777766543 2333333331 1 12222333566666
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 407 RAGQLDRALDFIKTMPVEPSPSIWGALVSASVMH-GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
+.+.++++.-++.+++.. ...+..+... ++++.|.+...+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 667777777777776521 1122222333 667777766654 234556666665554
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.24 E-value=1.3 Score=35.60 Aligned_cols=127 Identities=17% Similarity=0.102 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 044812 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101 (547)
Q Consensus 22 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 101 (547)
....++..+...+.+..+...++.+...+ +.++..++.++..|++.+ ..+....++. ..+......+++.|.+.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 35667777777788888888888888887 467888888888888753 3444455542 2333444556777777777
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHHHccC-CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044812 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEI-KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167 (547)
Q Consensus 102 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 167 (547)
++++.-++..+.. +...+..+... ++++.|.++... ..+...|..++..+.
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 7777777766532 12222222222 556666655543 124445555554443
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.23 E-value=1.9 Score=41.65 Aligned_cols=99 Identities=10% Similarity=0.193 Sum_probs=69.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHH
Q 044812 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-V-EPSP--SIWGALVSASV 438 (547)
Q Consensus 363 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~~~ 438 (547)
..+..++-+.|+.++|++.++++.+.+.......+...|+.++...+.+.++..++.+-. + -|.. ..|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 456667778999999999999998764333345577789999999999999999998873 1 2433 35665554433
Q ss_pred HcCC---------------HHHHHHHHHHHHhhCCCCC
Q 044812 439 MHGN---------------SEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 439 ~~~~---------------~~~a~~~~~~~~~~~~~~~ 461 (547)
..++ -..|.+.+.++.+.+|.-|
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3333 2346678888888776543
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=2.2 Score=38.20 Aligned_cols=140 Identities=12% Similarity=0.055 Sum_probs=59.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHH
Q 044812 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (547)
...|++.+|..+|+...... +-+...-..+..++...|+.+.|..++..+-.+. -.........-+..+.+.....+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34455555555555554431 1123334444555555555555555555442210 000111111122333333333333
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHHcCCC
Q 044812 415 LDFIKTMPVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE--PENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 415 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 476 (547)
..+-++..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..|+..+.-.|.
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 33333332233 33344445555555555555555555444432 3344445555555555443
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.16 E-value=2 Score=37.62 Aligned_cols=196 Identities=20% Similarity=0.207 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 044812 293 SLCNALIDMYSKCGSLDCARRVFEDSS----FNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS- 367 (547)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~- 367 (547)
..+......+...+.+..+...+.... .......+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 344445555555555555555554421 122333444455555555556666666666555332221 11111122
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCC
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRI--KPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS--PSIWGALVSASVMHGN 442 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~ 442 (547)
.+...|+++.|...+.+.... .. ......+......+...++.+.|...+.+. ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455666666666666665331 11 012222333333345566666666666655 22222 4556666666666667
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.+.+...+.......|.....+..+...+...|.++++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777766654445555555555556667777666665443
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=1.4 Score=39.41 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=87.9
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCH
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGA---LVSASVMHGNS 443 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~ 443 (547)
......|++.+|...|....... +-+...-..++.+|...|+.+.|..++..++..-...-+.. -+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34677899999999999987642 33566777889999999999999999999964433333333 22333333333
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.+... +++-...+|+|...-..++..+...|+.++|.+.+=.+.+++
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33222 333455689999999999999999999999999877775543
No 252
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.09 E-value=0.27 Score=39.89 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=21.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044812 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384 (547)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 384 (547)
..+...|++++|..++..+.... +-+...|..++.++...|+...|.++|+.
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 33444444444444444444431 12344444444444444444444444443
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=95.08 E-value=1.6 Score=41.96 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHHh
Q 044812 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRAGQLDRALDFIKT 420 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 420 (547)
+|.+.-++..+.+ +-|......+..+....++++.|...|++.. .+.|+ ...|........-.|+.++|.+.+++
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4445555555543 2245555555555555555666666666554 22343 23333334444456666666666665
Q ss_pred -CCCCC
Q 044812 421 -MPVEP 425 (547)
Q Consensus 421 -~~~~p 425 (547)
+...|
T Consensus 398 alrLsP 403 (458)
T PRK11906 398 SLQLEP 403 (458)
T ss_pred HhccCc
Confidence 34344
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.07 E-value=0.22 Score=43.66 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=64.2
Q ss_pred CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----------------cHHHHH
Q 044812 321 NKDAITWSSIVSGYGL-----HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG----------------LINEGL 379 (547)
Q Consensus 321 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------------~~~~a~ 379 (547)
+.|..+|...+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4566666666666543 3456666667788888888888888888887765432 224577
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhHhcCCH
Q 044812 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQL 411 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 411 (547)
.++++|. .+|+.||.++-..|++++++.+..
T Consensus 144 ~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 8888884 558999988888888888887753
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.97 E-value=0.36 Score=37.02 Aligned_cols=88 Identities=22% Similarity=0.234 Sum_probs=48.2
Q ss_pred HhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC---CchHHHHHHHHHcCCCH
Q 044812 404 MLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE-PEN---PSNYVSLSNLYASSRRW 477 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~ 477 (547)
++...|+++.|++.|.+. .+.| ....||.=..++.-.|+.++|+.-+++++++. +.. ...|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344556666666666554 2222 44556666666666666666666666666653 221 12344455556666666
Q ss_pred HHHHHHHHHHHhCC
Q 044812 478 DAVAELRTMMKDRG 491 (547)
Q Consensus 478 ~~A~~~~~~m~~~~ 491 (547)
+.|..=|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555544
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.96 E-value=0.14 Score=45.72 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCccCC
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD-----RGLKKSP 496 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 496 (547)
.++..++..+...|+.+.+.+.+++....+|-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~ 227 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP 227 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccH
Confidence 35566777777788888888888888888888888888888888888888888888887754 4555554
No 257
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.88 E-value=0.2 Score=41.51 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=65.6
Q ss_pred hHhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCH
Q 044812 405 LGRAGQLDRALDFIKTM-PVEP------SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477 (547)
Q Consensus 405 ~~~~g~~~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 477 (547)
+...|++++|..-|.+. ...| ..+.|..-..++.+.+..+.|+.--.++++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44566666666666554 1112 2344555566778889999999999999999998888888888999999999
Q ss_pred HHHHHHHHHHHhCC
Q 044812 478 DAVAELRTMMKDRG 491 (547)
Q Consensus 478 ~~A~~~~~~m~~~~ 491 (547)
++|++=|+.+.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987754
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.32 Score=43.87 Aligned_cols=115 Identities=10% Similarity=0.034 Sum_probs=91.3
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHH----HHHHHHHHHcCCH
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIW----GALVSASVMHGNS 443 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~----~~l~~~~~~~~~~ 443 (547)
--.|+..+|...++++.+++ +.|...+...=+++.-.|+.+.-...+++. +. .||.+.| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34678888888999998864 557777777778888899999999999887 33 4665433 3334455688999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
++|++.-+++.+++|.+..+......++...|++.++.+...+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 9999999999999999988888888888888888888887654
No 259
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.75 E-value=4.8 Score=39.82 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=117.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFN--KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK--PDIITIVGVL 366 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~l~ 366 (547)
+..+|..-+..-.+.|+.+.+.-+|++..+. .=...|-..+.-....|+.+-|..++....+-.++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567788888888889999999998875422 11233444555455558888888887776654333 2233333322
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----H
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTT-EICACVVDMLGRAGQLDRAL---DFIKTM-PVEPSPSIWGALVS-----A 436 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~-----~ 436 (547)
+...|+++.|..+++.+..++ |+. ..-..-+....+.|..+.+. .++... +.+-+..+...+.- .
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 455789999999999998763 543 33333455567788888887 444443 22222222222222 2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
+.-.++.+.|..++.++.+..|++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 345689999999999999999999999999988877665
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.73 E-value=2.3 Score=36.09 Aligned_cols=168 Identities=11% Similarity=0.091 Sum_probs=100.9
Q ss_pred CCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchh
Q 044812 318 SSFNKD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE 396 (547)
Q Consensus 318 ~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 396 (547)
+.+.|+ +..||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+...-....-.|-..
T Consensus 92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~ 170 (297)
T COG4785 92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRS 170 (297)
T ss_pred hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence 344555 4568888888899999999999999998854332222222222 34557888888877666654423344444
Q ss_pred HHHHHHHHhHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------CchHHHHH
Q 044812 397 ICACVVDMLGRAGQLDRALDFI-KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN-------PSNYVSLS 468 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~ 468 (547)
.|..+.. +.-++.+|..-+ ++.. ..|..-|...+-.+. .|+.. .+.+++++.+...++ ..+|..|+
T Consensus 171 LWLYl~E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 171 LWLYLNE---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred HHHHHHH---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 4444433 334666666544 3332 234344433333222 12221 134455554443333 44788999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 469 NLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
.-+...|+.++|..+|+-....++
T Consensus 245 K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHHhH
Confidence 999999999999999998776654
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=6.3 Score=40.66 Aligned_cols=178 Identities=9% Similarity=-0.008 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHH---HHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHH
Q 044812 55 PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYN---SLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131 (547)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 131 (547)
......-+..+.+...++-|..+-+.-..+....-+ ....-+-+.|++++|...|-+-... +.| ..++.-+
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 344566677788888888888887765443222222 2233455789999999888776543 222 2345555
Q ss_pred ccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChh--hHHHHHHHHHcCCCchhHHHH
Q 044812 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG--SWNVRISGHASSGDFSLVVRS 209 (547)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~a 209 (547)
........--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .+.. -....+..+.+.+-.+. |
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~---a 482 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDE---A 482 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHH---H
Confidence 5556666667788888888865 55556779999999999999888888776 2222 13344555555555554 3
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 210 RRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 210 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
..+..+... +..... -.+-..+++++|++.+..+
T Consensus 483 ~~LA~k~~~-he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 333332222 222222 3344578899999999887
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=2.5 Score=43.34 Aligned_cols=176 Identities=12% Similarity=0.004 Sum_probs=106.0
Q ss_pred HHhHHHHhhccCCchhHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhhHHHHHHHHHh
Q 044812 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV--SLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGL 336 (547)
Q Consensus 260 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~ 336 (547)
...-+..+.+...++.|..+-+ ..+..++. .......+.+.+.|++++|...|-+ ++ ..++ ..+|.-|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~-~le~---s~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG-FLEP---SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc-cCCh---HHHHHHhcC
Confidence 3444555555555555555432 33332221 2333344555667888888877754 55 2222 124555666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHhHhcCCHHHHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI-KPTTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
..+...-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+..- . |. ..|. ...+..+.+.+-+++|.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd~---e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFDV---ETALEILRKSNYLDEAE 483 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeeeH---HHHHHHHHHhChHHHHH
Confidence 66777777888888888865 44455778888888888888777766543 2 22 1133 33566666777778887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 416 DFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 416 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
.+-.+... +......++ -..+++++|++.++.+
T Consensus 484 ~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777653 344444444 4567888888887654
No 263
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.52 E-value=6.8 Score=40.56 Aligned_cols=77 Identities=13% Similarity=0.040 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 411 LDRALDFIKTMP-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 411 ~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
..+|...++... ...+.....--+......++.+.+...+..+.......+....-+++++...|+.++|..+|+..
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555432 11233333333334445556555555555554333334444555555555566666666665554
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.50 E-value=1.8 Score=42.90 Aligned_cols=158 Identities=15% Similarity=0.069 Sum_probs=83.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH-----HHHhHHHHhhc----cCCchhHHHHHHHHHHcCCCCchhHH
Q 044812 225 TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV-----SLVSVLPTCSS----LIGLSGGKQIHGFAIRKELNHDVSLC 295 (547)
Q Consensus 225 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 295 (547)
..++....=.||-+.+++.+.......++.-... +|..++..++. ..+.+.+.+++..+.+.- |+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHH
Confidence 3455555667888888888877633333333222 23333333333 334566777777776652 343333
Q ss_pred H-HHHHHHHhcCCHHHHHHHHhcCCC------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 296 N-ALIDMYSKCGSLDCARRVFEDSSF------NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 296 ~-~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
. .-.+.+...|++++|++.|++... +.....+--+.-.+...+++++|.+.|.++.+.. .-+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 2 334556667777777777764210 1122334445555666677777777777776642 2233344433333
Q ss_pred -HhccCcH-------HHHHHHHHHH
Q 044812 369 -CGRSGLI-------NEGLEIYNSV 385 (547)
Q Consensus 369 -~~~~g~~-------~~a~~~~~~~ 385 (547)
+...|+. ++|.++|.++
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHH
Confidence 2344544 5555555554
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.36 E-value=1.5 Score=42.33 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccC
Q 044812 431 GALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495 (547)
Q Consensus 431 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 495 (547)
..|..++.+.|+.++|++.++.+.+..|. +..+...|+.++...+.+.++..++.+-.+...+++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 44666666777777777777777766543 344667777777777777777777777544434333
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.26 E-value=0.86 Score=41.73 Aligned_cols=48 Identities=13% Similarity=0.035 Sum_probs=25.2
Q ss_pred HHHCCCHHHHHHHHHHchhcCC-CCCChHHHHhHHHHhhccCCchhHHH
Q 044812 231 YVQNGDLDEALVLFLEMQLKDR-IEPNKVSLVSVLPTCSSLIGLSGGKQ 278 (547)
Q Consensus 231 ~~~~~~~~~A~~~~~~m~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~ 278 (547)
+....+.++|+..+.+...+.. ...-..++..+..+.+..|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 4566777777777765522211 11122345555566666666555543
No 267
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.22 E-value=2 Score=33.24 Aligned_cols=64 Identities=20% Similarity=0.142 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCC
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 288 (547)
.....+..+.++|+-++-.+++.++ .+ .-.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l-~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNEL-KK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH-hh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3455677788888888888888887 33 4567777788888888888888888888888887774
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.14 E-value=4.5 Score=36.99 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHCCCHH---HHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHc
Q 044812 222 YAWTAMINGYVQNGDLD---EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 286 (547)
.+...++.+|...+..+ +|.++++.+..+.+-+| ..+..-+..+.+.++.+.+.+.+..|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 35667777777776654 45555555522322222 23333344444455555555555555543
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.13 E-value=1.5 Score=40.21 Aligned_cols=145 Identities=7% Similarity=0.031 Sum_probs=93.1
Q ss_pred cchHHHHHHHHHhccC-ch----HHHHHHHHHHHhCCCCChhHHHHHHHHHHh--c----CCchhHHHHhccCCC-----
Q 044812 20 SATVQHFLQVSATHRS-LK----LTKQSHSQILSLGHISNPFVSTKLITAYAL--C----GQPTQSQLVFNSIQH----- 83 (547)
Q Consensus 20 ~~~~~~~~~~~~~~~~-~~----~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~----- 83 (547)
+.....++..+...+. ++ +...+++.+.+.|+..+..+|-+..-.... . ....+|..+|+.|++
T Consensus 57 ~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 57 GNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 3334555666666665 44 448899999999999898877764444433 2 246678889999975
Q ss_pred --CCcchHHHHHHHHHhcCCh----hHHHHHHHHhhhCCCCCCcch--HHHHHHHHccCCC--cHHHHHHHHHHHHhCCC
Q 044812 84 --KDVYLYNSLINGYVKNHGH----NEALELFSNMYYSNVSPDDFT--LATISKLSGEIKD--LNVGMLIHGLSIKIGFV 153 (547)
Q Consensus 84 --~~~~~~~~ll~~~~~~~~~----~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~ 153 (547)
++-.++..++.. ..+++ +.+..+|+.+.+.|...+... ...++..+....+ ...+..+++.+.+.|++
T Consensus 137 Ts~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 137 TSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred cCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 333455555543 33333 567788888888787655442 2333333333322 34778889999999988
Q ss_pred CchhHHHHHHHHH
Q 044812 154 VDVILANSLMSMY 166 (547)
Q Consensus 154 ~~~~~~~~l~~~~ 166 (547)
+....|..+.-..
T Consensus 215 ik~~~yp~lGlLa 227 (297)
T PF13170_consen 215 IKYMHYPTLGLLA 227 (297)
T ss_pred cccccccHHHHHH
Confidence 8887777665443
No 270
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.91 E-value=3.1 Score=34.22 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChh
Q 044812 143 IHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222 (547)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~ 222 (547)
+++.+.+.+++|+...+..+++.+.+.|++.....++.--.-+|.......+-.+.... .....-+.+++.++. .
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~-~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQY-PPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccC-hHHHHHHHHHHHHhh----h
Confidence 33334444555555555555555555555555444444332222222221111111110 000111344444433 2
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
.+..++..+...|++-+|+++.+..
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3556778888899999999998775
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.91 E-value=5.2 Score=36.91 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC---hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC-----Cchh
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN---KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-----HDVS 293 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 293 (547)
..|..+..++-+.-++.+++.+-+.-....|..|. ......+..++...+.++++.+.|+...+.... ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 45666666666666777777666554233333331 122334555556666666666666665542211 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHH
Q 044812 294 LCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~ 314 (547)
++..|...|.+..++++|.-+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhh
Confidence 566666677776666665433
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.63 E-value=0.17 Score=28.64 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
+|..+...|...|++++|.+.|+++++.+|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677788888888888888888888888774
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.60 E-value=0.27 Score=37.68 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=53.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.-++...|+.+.|++.|.+.+.+-|.+++.|+.-+.++.-+|+.++|.+=+++..+..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999999999999999999999999887643
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.57 E-value=6.9 Score=37.21 Aligned_cols=150 Identities=13% Similarity=0.016 Sum_probs=78.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh-cCCCCchhHH
Q 044812 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP---DIITIVGVLSACGRSGLINEGLEIYNSVINT-YRIKPTTEIC 398 (547)
Q Consensus 323 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ 398 (547)
...+|..++..+-+.|+++.|...+.++...+..+ .......-...+-..|+..+|...++...+. ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777788888888888888888777643211 2233333445556677778888887777652 1111111111
Q ss_pred HHHHHHhHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 399 ACVVDMLGRAGQLDRALDF-IKTMPVEPSPSIWGALVSASVMH------GNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
..+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+.+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000112333333333334 7888899999999999888888888777776
Q ss_pred HcC
Q 044812 472 ASS 474 (547)
Q Consensus 472 ~~~ 474 (547)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 543
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.46 E-value=0.16 Score=29.29 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=19.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888743
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.35 E-value=0.19 Score=28.98 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
+|..|...|.+.|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678889999999999999999996544
No 277
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.09 E-value=5.6 Score=34.72 Aligned_cols=222 Identities=18% Similarity=0.154 Sum_probs=146.0
Q ss_pred CCHHHHHHHHHHchhcCCCC-CChHHHHhHHHHhhccCCchhHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHH
Q 044812 235 GDLDEALVLFLEMQLKDRIE-PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-ELNHDVSLCNALIDMYSKCGSLDCAR 312 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 312 (547)
+....+...+... ...... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEA-LELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHH-HhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 4445555555544 222111 12455566666666677777776666666542 23445556666777777788888888
Q ss_pred HHHhcCC-CCCCh-hhHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044812 313 RVFEDSS-FNKDA-ITWSSIVS-GYGLHGKGHEAVLLYNKMVCLGS--KPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 313 ~~~~~~~-~~~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
..+.... ..++. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 8887632 12222 22333333 78889999999999999865221 12334444444456778899999999998875
Q ss_pred hcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 388 TYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 388 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.. .. ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 196 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LN--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hC--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 42 33 3677888888888999999999999877 34454 445555666666777899999999999998886
No 278
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=12 Score=38.35 Aligned_cols=163 Identities=10% Similarity=0.042 Sum_probs=84.7
Q ss_pred HHHHHhcCCchhHHHHhccCCC--C---CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCC
Q 044812 62 ITAYALCGQPTQSQLVFNSIQH--K---DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD 136 (547)
Q Consensus 62 ~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 136 (547)
++.+.+.+.+++|++.-+.... + -...+...|..+.-.|++++|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 5677777888888887776654 1 2235667777777788888888777777653 34445444444444444
Q ss_pred cHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhh
Q 044812 137 LNVGMLIHGLSIKIG-FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQ 215 (547)
Q Consensus 137 ~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~ 215 (547)
......++ -.| ...+..+|..++..+.. .+... +++...+=....|..+-..-.-.-+ +.+
T Consensus 439 l~~Ia~~l----Pt~~~rL~p~vYemvLve~L~-~~~~~---F~e~i~~Wp~~Lys~l~iisa~~~q----------~~q 500 (846)
T KOG2066|consen 439 LTDIAPYL----PTGPPRLKPLVYEMVLVEFLA-SDVKG---FLELIKEWPGHLYSVLTIISATEPQ----------IKQ 500 (846)
T ss_pred cchhhccC----CCCCcccCchHHHHHHHHHHH-HHHHH---HHHHHHhCChhhhhhhHHHhhcchH----------HHh
Confidence 43322221 111 11244566666666655 22222 2222222111112111111000000 001
Q ss_pred cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 216 MKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
.. .+...-..|+..|...+++..|+..+-..
T Consensus 501 ~S-e~~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 501 NS-ESTALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred hc-cchhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 00 12223344888899999999999998777
No 279
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.90 E-value=0.93 Score=28.88 Aligned_cols=51 Identities=4% Similarity=-0.080 Sum_probs=41.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAA 539 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (547)
....++.++.+.|++++|.+..+.+.+. .|+..++.++...+.++|+..|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3567888999999999999999998753 46777888888888999998874
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.66 E-value=6.7 Score=34.53 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC-ChHHHHhHHHHhhccCCchhHHHHHHHHHHcC
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKE 287 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 287 (547)
.+-.=+..-.+.|++++|.+.|+.+..+....| ...+...++.++.+.++++.|....++.....
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 344445556788999999999998843333222 34455556666666777777766666666544
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.50 E-value=27 Score=41.08 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=44.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
..+|....+...+.|+++.|...+-+.....-+..+....+-....|+...|+.++++.+++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 566777777777788888888776555322233345556667778888888888888888664
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.33 E-value=3.9 Score=34.29 Aligned_cols=94 Identities=11% Similarity=0.033 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCc----hhH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD--IITIVGVLSACGRSGLINEGLEIYNSVINTYRI--KPT----TEI 397 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~----~~~ 397 (547)
.+..+...|++.|+.+.|.+.|.++.+....|. ...+..+|......+++..+.....+....... .++ ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456666777777777777777777766644443 234556666666777777777666665432111 111 122
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
|..+. +...+++.+|.+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23457787777777665
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.25 E-value=0.27 Score=29.99 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
|.++..++.+|.+.|++++|.+++++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999998754
No 284
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.22 E-value=11 Score=36.02 Aligned_cols=406 Identities=9% Similarity=0.034 Sum_probs=209.4
Q ss_pred HHHhccCCC-C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCC
Q 044812 75 QLVFNSIQH-K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGF 152 (547)
Q Consensus 75 ~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 152 (547)
+++=+++++ | |+.+|-.|+.-+..++..++..+++++|..- .+--+..|..-+.+-....++...+.+|.+.+...+
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 355556665 3 6789999999999999999999999999753 233456677777777777899999999999888755
Q ss_pred CCchhHHHHHHHHHHhcC-----C----hHHHHHHhccC--CCC-ChhhHHH---HHHHHHcCCCchhH---HHHHHHHh
Q 044812 153 VVDVILANSLMSMYVKCG-----K----FSECLNLFDEM--PQR-NVGSWNV---RISGHASSGDFSLV---VRSRRVFD 214 (547)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g-----~----~~~A~~~~~~~--~~~-~~~~~~~---li~~~~~~g~~~~a---~~a~~~~~ 214 (547)
. ...|...+..-.+.+ + +-+|.++.-.. .+| ...-|+. .+...-..|.+++- +...+.+.
T Consensus 108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4 444444444333322 1 22232222111 111 2223333 33333334444432 12333444
Q ss_pred hcCC-C---------ChhhHHHHHHHHH-------HCCCHHHHHHHHHHchh-cCCCC----CChHHHHhHHH-------
Q 044812 215 QMKR-R---------NVYAWTAMINGYV-------QNGDLDEALVLFLEMQL-KDRIE----PNKVSLVSVLP------- 265 (547)
Q Consensus 215 ~~~~-~---------~~~~~~~li~~~~-------~~~~~~~A~~~~~~m~~-~~~~~----p~~~~~~~ll~------- 265 (547)
++.. | |-..|..=++... ..--+-.|...+++... ..|.. .+..+++.+-+
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 4332 1 1111111111111 01123344455544410 11211 12222222111
Q ss_pred ----Hhhcc-----CC-c-hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhhHHHHHHH
Q 044812 266 ----TCSSL-----IG-L-SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSG 333 (547)
Q Consensus 266 ----~~~~~-----~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~ 333 (547)
--... ++ . ....-++++.... +.....+|----..+...++-+.|+..... +...|....+ +-..
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~--lse~ 342 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMF--LSEY 342 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhee--HHHH
Confidence 00000 00 0 0111111111111 122223333333334455666777776654 3333431111 1111
Q ss_pred HHhcCChHHHHHHHHHHH-------H-------cCC---------------CCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044812 334 YGLHGKGHEAVLLYNKMV-------C-------LGS---------------KPDIITIVGVLSACGRSGLINEGLEIYNS 384 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~-------~-------~g~---------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 384 (547)
|.-.++.+.....|+... . .+. .-=...|...+++..+..-++.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111111111111111110 0 001 01124466677777777888999999999
Q ss_pred HHHhcC-CCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCC--C
Q 044812 385 VINTYR-IKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIW-GALVSASVMHGNSEMQDLAYKSLIQLEP--E 459 (547)
Q Consensus 385 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 459 (547)
+.+. + +.+++.++++++..++ .|+..-|..+|+-- ..-||...| +..+.-+...++-+.|..+|+..++.-. .
T Consensus 423 ~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 423 LRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred Hhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 9776 5 5678888898888665 57888899998753 334555543 5566677788999999999997665321 1
Q ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 460 NPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
-..+|..++.--..-|+...+..+=++|.
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 24578888888888888877766666553
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.17 E-value=4.7 Score=33.15 Aligned_cols=131 Identities=10% Similarity=0.030 Sum_probs=75.9
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChHHHHHHhccCC
Q 044812 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCG--KFSECLNLFDEMP 183 (547)
Q Consensus 106 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 183 (547)
.+.+..+.+.+++|+...+..+++.+.+.|++.... ++++.++-+|.......+-.+.... -..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 345555566778888888888888888888765443 3344454445443333322221111 1334445555543
Q ss_pred CCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 184 QRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
..+..++..+...|++-+ |.+..+.....+......++.+..+.+|...-..+|+-.
T Consensus 90 ----~~~~~iievLL~~g~vl~---ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLE---ALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHH---HHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234456677777887777 777776655555555566777777777766555555444
No 286
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.12 E-value=0.45 Score=42.52 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=78.1
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC-C------CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 044812 45 QILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-K------DVYLYNSLINGYVKNHGHNEALELFSNMYYSNV 117 (547)
Q Consensus 45 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 117 (547)
.--.+|.+....+...++..-....+++.++..+-+++. | +.. -...++.+ -.-++++++.++..=++.|+
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGi 131 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGI 131 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhcc
Confidence 334566677777777777777777889999888777653 2 222 12223333 33478899999999999999
Q ss_pred CCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhC
Q 044812 118 SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG 151 (547)
Q Consensus 118 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 151 (547)
-||.+++..+|..+.+.+++..|.++.-.|+...
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888776654
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.96 E-value=1.3 Score=35.08 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 408 AGQLDRALDFIKTM-PVEPS---PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 408 ~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
.++++++..+++.| ...|+ ..++. +..+...|++.+|.++|+.+.+..+..+..-..++.++.-.|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 55666666666555 22332 22222 2234555666666666666655555444444444445444554
No 288
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.84 E-value=3.2 Score=32.31 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhh-CCCC-CchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccc
Q 044812 425 PSPSIWGALVSASVMHG---NSEMQDLAYKSLIQL-EPEN-PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 499 (547)
+...+--.+..++.+.. +..+.+.+++.+.+. .|.. ......|+-++.+.|+++.+.++++.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--------- 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--------- 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh---------
Confidence 33344444555555443 456666777777762 2332 234456667777888888888888776643
Q ss_pred eEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCc
Q 044812 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540 (547)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (547)
.|+..++.++-+.+.++|.+.|+.
T Consensus 101 -----------------e~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 101 -----------------EPNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred -----------------CCCcHHHHHHHHHHHHHHhhccee
Confidence 234455666666667777777754
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.78 E-value=1.5 Score=35.54 Aligned_cols=72 Identities=14% Similarity=0.033 Sum_probs=46.9
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCH
Q 044812 406 GRAGQLDRALDFIKTM-PVEPSPSIWG-ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 477 (547)
.+.++.+++..++..+ ..+|...... .-...+...|++.+|+.+|+.+.+..|..+..-..++.++...|+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 4567888888888777 3445433222 2234456778888888888887777776666666666666666663
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.30 E-value=2.8 Score=35.14 Aligned_cols=96 Identities=17% Similarity=0.059 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh--HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK--VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
..+..+...|.+.|+.+.|++.|.++ ......+.. ..+..+|+...-.+++..+.....++...-..........-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46788899999999999999999998 665555543 345667777788888888887777665432221111111111
Q ss_pred H-----HHHhcCCHHHHHHHHhcC
Q 044812 300 D-----MYSKCGSLDCARRVFEDS 318 (547)
Q Consensus 300 ~-----~~~~~g~~~~A~~~~~~~ 318 (547)
. .+...+++..|-+.|-+.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 1 123356777777766553
No 291
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.24 E-value=0.13 Score=41.63 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=40.5
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccC
Q 044812 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182 (547)
Q Consensus 126 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 182 (547)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++..
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~ 68 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS 68 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc
Confidence 355666667777777777887776665566777888888888887777777777743
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.04 E-value=14 Score=35.09 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE----PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
....+|..+...+.+.|.++.|...+.++.... +..+.+....+..+...|+..+|...++......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999998864 2256788888999999999999999999887733
No 293
>PRK09687 putative lyase; Provisional
Probab=90.33 E-value=14 Score=33.74 Aligned_cols=219 Identities=10% Similarity=-0.012 Sum_probs=112.2
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCCh----hHHHHHHHHhhhCCCCCCcchHHHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGH----NEALELFSNMYYSNVSPDDFTLATI 127 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~A~~~~~~m~~~~~~p~~~~~~~l 127 (547)
.+|..+....+.++...|..+....+..-+..++...-...+.++.+.|+. .++...+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 467777777778887777655555555544566777777777788887764 4677777776433 2455555555
Q ss_pred HHHHccCCCc-----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCC
Q 044812 128 SKLSGEIKDL-----NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202 (547)
Q Consensus 128 ~~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 202 (547)
+.+++..+.. ..+...+.... ..++..+-...+.++.+.|+.+....+..-+..+|...-..-+.++.+.+.
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC
Confidence 5555554321 22233332222 234666666777777777765444444444444444333333333333321
Q ss_pred -chhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHH
Q 044812 203 -FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHG 281 (547)
Q Consensus 203 -~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 281 (547)
...+ .-.+...+..++...-...+.++.+.|+. .|+..+-.. .+.+ + .....+.++...|+. .+...+.
T Consensus 189 ~~~~~--~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~-L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~ 258 (280)
T PRK09687 189 DNPDI--REAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKE-LKKG---T--VGDLIIEAAGELGDK-TLLPVLD 258 (280)
T ss_pred CCHHH--HHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHH-HcCC---c--hHHHHHHHHHhcCCH-hHHHHHH
Confidence 1110 11223333445555555666666666663 344444333 2221 1 122344444555543 3444444
Q ss_pred HHHH
Q 044812 282 FAIR 285 (547)
Q Consensus 282 ~~~~ 285 (547)
.+.+
T Consensus 259 ~l~~ 262 (280)
T PRK09687 259 TLLY 262 (280)
T ss_pred HHHh
Confidence 4443
No 294
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.28 E-value=0.73 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.+..++.+.|+.++|.+.|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555566666666666666665554
No 295
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.20 E-value=0.87 Score=27.01 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 428 SIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
.+++.|...|...|++++|+.+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35666666677777777777776666553
No 296
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.98 E-value=5.7 Score=38.08 Aligned_cols=138 Identities=9% Similarity=0.025 Sum_probs=87.2
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a 446 (547)
-...|++-.|-+-+....+.+.-.|+.... ....+...|.++.+...+... .+.....+..+++....+.|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344566666655444444443333443333 334456778888888887766 2334566777888888888888888
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEE
Q 044812 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCF 510 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 510 (547)
...-+.++..+-.++......+..-...|-++++...|++....+.+ ....|+........|
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~--~~~g~v~~~~~~~~~ 438 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE--TQSGWVNFLSSTQYF 438 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh--hcccceeeeccceec
Confidence 88888888777667766666666666678888888888887655443 333454443333333
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.52 E-value=0.56 Score=26.35 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=24.7
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
..+..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999988653
No 298
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.29 E-value=12 Score=31.45 Aligned_cols=54 Identities=0% Similarity=-0.120 Sum_probs=24.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.....|.+++|+..++...+.+- .+.....-++++...|+-++|+.-|+.....
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 34444555555554444332211 1112333445555555555555555554443
No 299
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.18 E-value=14 Score=32.05 Aligned_cols=18 Identities=22% Similarity=-0.018 Sum_probs=10.0
Q ss_pred HhcCChHHHHHHHHHHHH
Q 044812 335 GLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~ 352 (547)
.+..++++|...+...++
T Consensus 84 ykk~~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIE 101 (288)
T ss_pred hhccChHHHHHHHHHHHH
Confidence 344466666666665543
No 300
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.98 E-value=4.7 Score=36.33 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC-----LGSKPDIITIVG 364 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 364 (547)
..++..++..+...|+.+.+...++++ .. +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345677888888888888888888773 21 44667888999999999999999888887765 477777666555
Q ss_pred HHHH
Q 044812 365 VLSA 368 (547)
Q Consensus 365 l~~~ 368 (547)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.92 E-value=3.5 Score=33.42 Aligned_cols=120 Identities=12% Similarity=0.091 Sum_probs=67.6
Q ss_pred CHHHHHHHHHH---HhccCcHHHHHHHHHHHHHhcCCCCchhH-HHHHHHHhHhcCCHHHHHHHHHhCC-CCCCHHHHHH
Q 044812 358 DIITIVGVLSA---CGRSGLINEGLEIYNSVINTYRIKPTTEI-CACVVDMLGRAGQLDRALDFIKTMP-VEPSPSIWGA 432 (547)
Q Consensus 358 ~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ 432 (547)
+..+.+.|+.. -...++.+++..++..+. -+.|.... -..-...+...|++.+|..+|+++. ..|....-..
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kA 82 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKA 82 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHH
Confidence 34455555554 457789999999999886 44664332 2233455688999999999999983 2344444444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHH
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE 482 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 482 (547)
|+..|.....-..=...-+++++.++ ++.+ ..++..+....+...|.+
T Consensus 83 LlA~CL~~~~D~~Wr~~A~evle~~~-d~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 83 LLALCLYALGDPSWRRYADEVLESGA-DPDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhcCC-ChHH-HHHHHHHHHhccccchhh
Confidence 55444443333333333444444444 3333 334444444444444443
No 302
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=88.48 E-value=0.52 Score=36.18 Aligned_cols=38 Identities=39% Similarity=0.814 Sum_probs=29.7
Q ss_pred ccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCCCC
Q 044812 497 GCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHLGKM 546 (547)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 546 (547)
+++|+.+ |.|++|+++||+. .+..++...||.|+++.+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~ 39 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEV 39 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhh
Confidence 5678766 9999999999988 344677778888887653
No 303
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.41 E-value=13 Score=30.61 Aligned_cols=121 Identities=11% Similarity=-0.006 Sum_probs=59.1
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCCchhHHHHhccCCC--CCcchHHH---H--HHHHHhcC
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISNPFV-STKLITAYALCGQPTQSQLVFNSIQH--KDVYLYNS---L--INGYVKNH 100 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~---l--l~~~~~~~ 100 (547)
-+...+..++|..-|.++.+.|...=+.. .-.........|+...|...|+.+-. +.+....- | .-.+..+|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 34455667777777777777665433322 22333445556677777777766543 11111111 1 11234556
Q ss_pred ChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHH
Q 044812 101 GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIK 149 (547)
Q Consensus 101 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 149 (547)
.++....-.+-+-..+-+.-...-..|.-+-.+.|++..|.+.|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666655555554332221222223344444455566666665555544
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.16 E-value=0.79 Score=25.78 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=25.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.+|..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46889999999999999999999998754
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.13 E-value=0.75 Score=24.13 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=15.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Q 044812 463 NYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777776654
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.00 E-value=36 Score=35.26 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=89.9
Q ss_pred HHccCCCcHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhH
Q 044812 130 LSGEIKDLNVGMLIHGLSIKIGFVV---DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLV 206 (547)
Q Consensus 130 ~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 206 (547)
.+.+.+.+++|..+-+... |..| ........|..+...|++++|-...-.|...+..-|...+..+...++...
T Consensus 365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~- 441 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD- 441 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch-
Confidence 3344445555554443322 2222 234556677777888888888888888888888888777777777777443
Q ss_pred HHHHHHHhhcCC----CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHH
Q 044812 207 VRSRRVFDQMKR----RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGF 282 (547)
Q Consensus 207 ~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 282 (547)
++.-++. -+...|..++..+.. .+...-.++..+- +++...-..++++. ..+
T Consensus 442 -----Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~W------p~~Lys~l~iisa~------------~~q 497 (846)
T KOG2066|consen 442 -----IAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEW------PGHLYSVLTIISAT------------EPQ 497 (846)
T ss_pred -----hhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhC------ChhhhhhhHHHhhc------------chH
Confidence 3333332 255678888777776 3333333333222 22222111122111 001
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 044812 283 AIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 319 (547)
..+. .-+...-..|+..|...|+++.|..++-...
T Consensus 498 ~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 498 IKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 1111 1122233448888999999999998887655
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.96 E-value=45 Score=36.41 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhcC--CchhHHHHhccCC
Q 044812 56 FVSTKLITAYALCG--QPTQSQLVFNSIQ 82 (547)
Q Consensus 56 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~ 82 (547)
.....++.+|.+.+ .++.|+.......
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 55566777777776 6666666555444
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.68 E-value=1 Score=25.53 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=22.7
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 044812 144 HGLSIKIGFVVDVILANSLMSMYVKCGKFSECL 176 (547)
Q Consensus 144 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 176 (547)
+++.++.. +-+...|+.+..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445544 456778888888888888888875
No 309
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.27 E-value=40 Score=35.01 Aligned_cols=66 Identities=17% Similarity=0.051 Sum_probs=42.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCC-------cHHHHHHHHHHHHhCC
Q 044812 85 DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD-------LNVGMLIHGLSIKIGF 152 (547)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~g~ 152 (547)
+...| .+|--|.++|++++|.++..+.... .......|...+..+....+ -+....-|++..+...
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 34455 4566788999999999999666643 45566778888888877543 2355555666555443
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.04 E-value=6.2 Score=29.04 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=35.9
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 420 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
.+..-|++.+..+.+++|.+.+|+..|.++++-+...-.+....|..++.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 34567899999999999999999999999999988776544446766643
No 311
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.93 E-value=74 Score=37.80 Aligned_cols=311 Identities=9% Similarity=0.034 Sum_probs=167.4
Q ss_pred HHHHHHHhcCChHHHHHHhccC----CCCChh-hHHHHHH-HHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHC
Q 044812 161 SLMSMYVKCGKFSECLNLFDEM----PQRNVG-SWNVRIS-GHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234 (547)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~-~~~~li~-~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~ 234 (547)
.|..+=.+++.+..|...++.- .+.+.. .+..++. .|..-+++|.+..+... +...++ ...-|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~--r~a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR--RFADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH--hhcCcc---HHHHHHHHHhh
Confidence 4555667888999999988883 222221 3334444 88888888875555443 111122 23345667788
Q ss_pred CCHHHHHHHHHHchhcCCCCCC-hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHH
Q 044812 235 GDLDEALVLFLEMQLKDRIEPN-KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSL-CNALIDMYSKCGSLDCAR 312 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~ 312 (547)
|++..|...|+.+ .+ ..|+ ..+++.++......+.++...-..+-..... .+.... ++.=+.+--+.++++...
T Consensus 1463 g~~~da~~Cye~~-~q--~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1463 GNWADAAACYERL-IQ--KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred ccHHHHHHHHHHh-hc--CCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 9999999999998 33 3344 6677878877777777777666544443332 222222 222334445666777666
Q ss_pred HHHhcCCCCCChhhHHHH--HHHHHhcCChH--HHHHHHHHHHHcCCCC--------C-HHHHHHHHHHHhccCcHHHHH
Q 044812 313 RVFEDSSFNKDAITWSSI--VSGYGLHGKGH--EAVLLYNKMVCLGSKP--------D-IITIVGVLSACGRSGLINEGL 379 (547)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~--~a~~~~~~m~~~g~~p--------~-~~~~~~l~~~~~~~g~~~~a~ 379 (547)
.... ..+..+|... +....+..+-+ .-.+..+.+++.-+.| + ...|..++..+.-. +.+.-
T Consensus 1539 ~~l~----~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~- 1612 (2382)
T KOG0890|consen 1539 SYLS----DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENS- 1612 (2382)
T ss_pred hhhh----cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHH-
Confidence 6554 2333344333 22222222111 1112333333221111 0 12233333322111 01111
Q ss_pred HHHHHHHHhcCCCCchh------HHHHHHHHhHhcCCHHHHHHHHHhC----CCC-----CCHHHHHHHHHHHHHcCCHH
Q 044812 380 EIYNSVINTYRIKPTTE------ICACVVDMLGRAGQLDRALDFIKTM----PVE-----PSPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-----p~~~~~~~l~~~~~~~~~~~ 444 (547)
.+ ...++.++.. .|..-+..-....+..+-.--+++. ... --..+|....+.....|.++
T Consensus 1613 --~~---~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1613 --IE---ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred --HH---HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 11 1112233211 1211111111111111111111111 112 23568999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
.|...+-.+.+..+ +..+...+..+...|+...|..++++..+...+
T Consensus 1688 ~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1688 RAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 99999888877774 568999999999999999999999998866553
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.81 E-value=5.6 Score=28.93 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=36.8
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 420 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
.+..-|++.+..+-+++|.+.+|+..|.++++-+......+...|..++
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3356688888888999999999999999999888765544445565554
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.76 E-value=33 Score=33.61 Aligned_cols=177 Identities=8% Similarity=0.104 Sum_probs=102.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
.|.....+++..++......-...+..++ .+..+...|..+++.|..+ ..++-..+|+++.+..+. |...-..|...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 34444555666666666666555555542 2234555677777777776 456677777777775332 22223333333
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPT------TEICACVVDMLGRAGQLDRALDFIKTM----PVEPSPSIWGALVSASV 438 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 438 (547)
|.+ ++...+..+|.++..+ +.|. .+.|..+...- ..+.+..+.+..+. +...-...+.-+..-|.
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 433 6777777777776653 2331 22444444321 33555555555544 23334455566667777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 439 MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
...++++|++++..+++.+..|..+...++..+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 78888888888888888776666666666555544
No 314
>PRK10941 hypothetical protein; Provisional
Probab=86.69 E-value=10 Score=34.29 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
..+.+-.+|.+.++++.|+++.+.++...|+++.-+..-+-+|.+.|.+..|..=++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 456677788999999999999999999999999999999999999999999999998887643
No 315
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.45 E-value=34 Score=36.57 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCchhHHHHhccC
Q 044812 58 STKLITAYALCGQPTQSQLVFNSI 81 (547)
Q Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~~ 81 (547)
|..|+..|...|+.++|+++|...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l 530 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDL 530 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHH
Confidence 444555555555555555555444
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.21 E-value=2.9 Score=38.15 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=48.7
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTMPVEPS---PSIWGALVSASVMHGNS 443 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~ 443 (547)
.|.++|++++|+..|...+ .+.| ++.++..-..+|.+..++..|..=....- ..| ...|.--+.+-...|..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai-aLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI-ALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHhhH
Confidence 3556666666666666554 2344 55666656666666666655544333321 001 11222233333345667
Q ss_pred HHHHHHHHHHHhhCCCCCc
Q 044812 444 EMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~ 462 (547)
.+|.+-++.+++++|.+..
T Consensus 182 ~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHhHHHHHhhCcccHH
Confidence 7777777777777776543
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.18 E-value=22 Score=35.51 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=58.6
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+..-|..|..+..+.+++..|.+.|... .. |..|+-.+...|+-+....+-....+.|. .|...
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a-~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF 728 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRA-RD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAF 728 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhh-cc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHH
Confidence 4556888888888888888888888776 22 45666666677776666666555555552 23344
Q ss_pred HHHHhcCCHHHHHHHHhcCC
Q 044812 300 DMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~ 319 (547)
.+|...|+++++.+++.+-+
T Consensus 729 ~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHcCCHHHHHHHHHhcC
Confidence 56777888998888887655
No 318
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.09 E-value=43 Score=34.26 Aligned_cols=248 Identities=12% Similarity=0.078 Sum_probs=140.6
Q ss_pred HHHCCCHHHHHHHHHHchhc-------CCCCCChHHHHhHHHHhhccC-----CchhHHHHHHHHHHcCCCCchhHHHHH
Q 044812 231 YVQNGDLDEALVLFLEMQLK-------DRIEPNKVSLVSVLPTCSSLI-----GLSGGKQIHGFAIRKELNHDVSLCNAL 298 (547)
Q Consensus 231 ~~~~~~~~~A~~~~~~m~~~-------~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l 298 (547)
+....+.+.|+.+|+.+ .+ .+ .......+..+|.+.. +.+.|..++....+.| .|+.... +
T Consensus 259 ~g~~~d~e~a~~~l~~a-a~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~--l 331 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLA-AESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYL--L 331 (552)
T ss_pred ccccccHHHHHHHHHHH-HHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHH--H
Confidence 34567899999999887 44 33 2234455555565533 5566888888888887 3333332 3
Q ss_pred HHHHHh---cCCHHHHHHHHhcCCCCCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 299 IDMYSK---CGSLDCARRVFEDSSFNKDAITWSSIVSGYG----LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 299 ~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
..++.. ..+...|.++|......-....+-.+...|. ...+...|..++++.-+.| .|...--...+..+..
T Consensus 332 g~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 332 GVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV 410 (552)
T ss_pred HHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc
Confidence 333332 2457788888876332333333333333332 3357788899999888887 4432222333333444
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh---Hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDML---GR----AGQLDRALDFIKTMPVEPSPSIWGALVSASVMH---- 440 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---- 440 (547)
+..+.+.-.+..+.+. +.......-..++... .. ..+.+.+..++.+...+-+......+...|...
T Consensus 411 -~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred -ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCC
Confidence 6666666555555433 3322111111111111 11 235666777777765555666666666665543
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcC-C--CHHHHHHHHHHHHhCC
Q 044812 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS-R--RWDAVAELRTMMKDRG 491 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~~~ 491 (547)
.+++.|...+.++.... ......++.++... | .+..|.++++...+.+
T Consensus 489 ~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred CChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 35888888888877666 56666777776543 1 2677777777765533
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.04 E-value=20 Score=30.26 Aligned_cols=128 Identities=10% Similarity=0.088 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHHHHhcCCCCch----hHHH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVG--VLSACGRSGLINEGLEIYNSVINTYRIKPTT----EICA 399 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ 399 (547)
.|..++.... .+.. +.......+....-+-...++.. +...+...|++++|+..++..... +.|. ..--
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3555555443 2333 44455555555422222222222 344578889999999999877642 2222 2223
Q ss_pred HHHHHhHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 400 CVVDMLGRAGQLDRALDFIKTMPVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
.|.......|.+++|+..++....+ -.......-+..+...|+-++|...|++.++.++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 4566778899999999999987422 1233445556789999999999999999999874
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.84 E-value=2.6 Score=26.87 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
.+.-++.+.|++++|.+..+.+++.+|+|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566789999999999999999999999876443
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.77 E-value=1.6 Score=25.82 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=23.9
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678999999999999999999998754
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.70 E-value=3.5 Score=36.79 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
++....+.|...|.+.+|.++-++++..+|-+...+..|+..|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 455566788999999999999999999999999999999999999999888888888874
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.52 E-value=1.1 Score=24.83 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=24.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
++..++.++.+.|++++|.++++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999998764
No 324
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.12 E-value=2.1 Score=22.87 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
.|..+...+...|+++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345556666666666666666666666554
No 325
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.02 E-value=8.4 Score=28.37 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
+..+-++.+....+.|++......+.+|-+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555666666667788888888888888888888888888887766543 23336666654
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.95 E-value=1.2 Score=35.80 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=65.9
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhH
Q 044812 25 HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNE 104 (547)
Q Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 104 (547)
.++..+...+.+..+...++.+...+...++...+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34556666788888888999999888777899999999999999888999998884433 334566777778888888
Q ss_pred HHHHHHHhhh
Q 044812 105 ALELFSNMYY 114 (547)
Q Consensus 105 A~~~~~~m~~ 114 (547)
|.-++..+..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 8888777643
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.45 E-value=2.4 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=25.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998764
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.36 E-value=2 Score=26.08 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 465 VSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988644
No 329
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.11 E-value=13 Score=33.66 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=62.1
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 044812 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKD------AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDI 359 (547)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 359 (547)
.|.+.+..+...++..-....+++.+..++-++.-.|+ ...+ +.++.+. .-++++++.++..=+.-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 34444555555555555556667777766644321222 1111 1222222 23566777777777778888888
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINT 388 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 388 (547)
.+++.+++.+.+.+++.+|..+.-.|+.+
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888777766554
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.10 E-value=6.3 Score=31.45 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=43.5
Q ss_pred CHHHHHHHHHH---HhccCcHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHhHhcCCHHHHHHHHHhCCCCC
Q 044812 358 DIITIVGVLSA---CGRSGLINEGLEIYNSVINTYRIKPTTE-ICACVVDMLGRAGQLDRALDFIKTMPVEP 425 (547)
Q Consensus 358 ~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 425 (547)
+....+.|+.. -...++.+++..++..+. -+.|+.. .-..-...+...|++++|..+|++....+
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34445555544 345889999999999886 4456432 22223445678999999999999995333
No 331
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.96 E-value=25 Score=29.00 Aligned_cols=130 Identities=11% Similarity=0.093 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchh-HHHHH-
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII-TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE-ICACV- 401 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l- 401 (547)
..|..-+. +.+.++.++|+.-|..+.+.|...-+. .-..........|+...|...|.++-+. .-.|-+. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 34444333 456788899999999998876543211 1122233467789999999999998765 2223221 11122
Q ss_pred -HHHhHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 402 -VDMLGRAGQLDRALDFIKTMPVEPS---PSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 402 -~~~~~~~g~~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
...+...|.+++.....+.+....+ ...-..|.-+-.+.|++..|...|.++...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 2345678999999888888732222 234466777778999999999999998763
No 332
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.34 E-value=36 Score=30.29 Aligned_cols=222 Identities=16% Similarity=0.178 Sum_probs=119.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcC---CC--CCChHHHHhHHHHhhccCCchhHHHHHHHHHH-----cCCCCchh
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKD---RI--EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR-----KELNHDVS 293 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 293 (547)
.-.+|..+.+.|++++.+..|.++ ... .+ .-+....+.++.-.+...+.+....+++.-.+ .+-..-..
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~ql-LTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQL-LTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHH-HHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 344566677777777777777666 211 11 22344566666655555555555444443322 11112223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--C-----C-------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC
Q 044812 294 LCNALIDMYSKCGSLDCARRVFEDSS--F-----N-------KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPD 358 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~-----~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~ 358 (547)
|-..|...|...|.+.+...+++++. + . .-...|..-|..|....+-.+...+|++...-. .-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 44567778888888887777776421 0 1 112357777888888888777777887765432 2333
Q ss_pred HHHHHHHHHHH-----hccCcHHHHHHHHHHHHHhcCC--CCch---hHHHHHHHHhHhcCC----HHHHHHHHHhCCCC
Q 044812 359 IITIVGVLSAC-----GRSGLINEGLEIYNSVINTYRI--KPTT---EICACVVDMLGRAGQ----LDRALDFIKTMPVE 424 (547)
Q Consensus 359 ~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~ 424 (547)
+. ...+|+-| .+.|.+++|..-|-+..+.+.- .|.. --|..|...+.+.|- -.+|. -....
T Consensus 227 Pl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNd 301 (440)
T KOG1464|consen 227 PL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKND 301 (440)
T ss_pred hH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCC
Confidence 33 33445544 4678888887654444443322 2322 225556666666551 11111 01233
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 425 PSPSIWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
|.......++.+|.. ++..+-++++..
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 455567778887754 455555555443
No 333
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.28 E-value=84 Score=34.54 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=20.4
Q ss_pred CCchhHHHHHHHHHHhcC--ChHHHHHHhccCC
Q 044812 153 VVDVILANSLMSMYVKCG--KFSECLNLFDEMP 183 (547)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 183 (547)
.|+ .....++..|.+.+ .+++|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 445 44566778888877 6777777766655
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.08 E-value=16 Score=36.47 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=65.4
Q ss_pred HHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHH
Q 044812 65 YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144 (547)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 144 (547)
..+.|+.+.|.++..+. .+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34556666666654433 3445688888888888888888888776543 445666666777776666665
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccC
Q 044812 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEM 182 (547)
Q Consensus 145 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 182 (547)
....+.|. .|.-..+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 55555552 233344566778888888877654
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.04 E-value=9.7 Score=32.26 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCCchHHHHHHHHHcCCCHH
Q 044812 406 GRAGQLDRALDFIKTMPVEP---SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE----PENPSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 478 (547)
.+.|+ ++|.+.|-.+...| ++.....|. .|....|.++++.++-+++++. ..|+..+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 56666666663222 344444444 4445678999999999998863 346888999999999999988
Q ss_pred HHH
Q 044812 479 AVA 481 (547)
Q Consensus 479 ~A~ 481 (547)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 336
>PRK09687 putative lyase; Provisional
Probab=81.77 E-value=42 Score=30.72 Aligned_cols=136 Identities=11% Similarity=0.028 Sum_probs=61.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHhcCCCCchhHHHH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG-LINEGLEIYNSVINTYRIKPTTEICAC 400 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 400 (547)
++...-...+.++.+.++ +.+...+..+.+ .+|...-...+.++...+ .-+.+...+-.+.. .++..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 344444444555555544 344444444444 233333333333444332 12334444444432 234444555
Q ss_pred HHHHhHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 401 VVDMLGRAGQLDRALDFI-KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
.+.++++.|+. .|...+ +.+. .++ .....+.++...|+. +|...+.++.+..| |+.+-....+++
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 55666666653 333333 3332 222 223455666666664 46666666666555 444444444433
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.60 E-value=3.1 Score=37.90 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=67.3
Q ss_pred HHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHH
Q 044812 402 VDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (547)
..-|.++|.+++|.+.|.+. ...| +++++..-..+|.+...+..|+.--..++.++..-..+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 34678999999999999875 5667 888888888899999999988888888887776555667666666666777777
Q ss_pred HHHHHHHHH
Q 044812 480 VAELRTMMK 488 (547)
Q Consensus 480 A~~~~~~m~ 488 (547)
|.+=++...
T Consensus 184 AKkD~E~vL 192 (536)
T KOG4648|consen 184 AKKDCETVL 192 (536)
T ss_pred HHHhHHHHH
Confidence 766665543
No 338
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.57 E-value=36 Score=29.89 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCChHHHHHHhccC
Q 044812 159 ANSLMSMYVKCGKFSECLNLFDEM 182 (547)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~ 182 (547)
|..-..+|....++++|...+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 344445566666677666655543
No 339
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.51 E-value=26 Score=28.09 Aligned_cols=88 Identities=7% Similarity=0.042 Sum_probs=54.6
Q ss_pred HHhCCCCCh--hHHHHHHHHHHhcCCchhHHHHhccCCC---------CCcchHHHHHHHHHhcCC-hhHHHHHHHHhhh
Q 044812 47 LSLGHISNP--FVSTKLITAYALCGQPTQSQLVFNSIQH---------KDVYLYNSLINGYVKNHG-HNEALELFSNMYY 114 (547)
Q Consensus 47 ~~~g~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~ 114 (547)
.+.+..++. ...|+++.-.+..+++...+.+++.+.. .+..+|+.++.+.++..- --.+..+|..|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 444444443 3457777777777777777777776632 344567777777655544 3445666666666
Q ss_pred CCCCCCcchHHHHHHHHccC
Q 044812 115 SNVSPDDFTLATISKLSGEI 134 (547)
Q Consensus 115 ~~~~p~~~~~~~l~~~~~~~ 134 (547)
.+.+++..-|..++.++.+.
T Consensus 109 ~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcC
Confidence 66666666777777666554
No 340
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=81.41 E-value=3.7 Score=22.40 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
|+.+.+..+|++++...|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888899999998888888888777654
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.33 E-value=12 Score=32.08 Aligned_cols=77 Identities=13% Similarity=0.077 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHH
Q 044812 89 YNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG--FVVDVILANSLMSMY 166 (547)
Q Consensus 89 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~ 166 (547)
-+..+..+.+.+...+++...++-.+... -|..+-..+++.++-.|++++|..-++..-+.. ..+-..+|..+|++-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 44556777888888888888877776532 256667778888888888888888777765543 223345666666543
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.60 E-value=8.9 Score=32.81 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=53.5
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc---hHHHHHH
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS---NYVSLSN 469 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~ 469 (547)
.+..++.+.+.+++.+|+...+.- +.+| |..+-..+++.++-.|++++|..-++-+-++.|.... .|..+++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 345567788889999999888654 5556 4556777888999999999999999998888876433 4444444
No 343
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.75 E-value=26 Score=29.67 Aligned_cols=102 Identities=12% Similarity=0.120 Sum_probs=57.7
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKP---TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNS 443 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~ 443 (547)
+...|++++|..-|........-.+ ....|..-..++.+.+.++.|++-..+. .+.|.-. .+.--..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 4456666666666666654321111 1223333445566666677666665554 3334221 222234467777888
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
+.|++-|+++++.+|....+-...++.
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 888888888888888765555444443
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.59 E-value=20 Score=30.40 Aligned_cols=73 Identities=7% Similarity=0.019 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHhHhcCCHHHH
Q 044812 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI--KPTTEICACVVDMLGRAGQLDRA 414 (547)
Q Consensus 341 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 414 (547)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+..+- .+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555544443333333333333333 34455555555544432211 33455555555555555555544
No 345
>PRK12798 chemotaxis protein; Reviewed
Probab=79.30 E-value=61 Score=31.11 Aligned_cols=180 Identities=17% Similarity=0.226 Sum_probs=110.9
Q ss_pred cCCHHHHHHHHhcCC---CCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHH
Q 044812 305 CGSLDCARRVFEDSS---FNKDAITWSSIVSG-YGLHGKGHEAVLLYNKMVCLGSKPDI----ITIVGVLSACGRSGLIN 376 (547)
Q Consensus 305 ~g~~~~A~~~~~~~~---~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~ 376 (547)
.|+.+++.+.+..+. ..+....|-.|+.+ .....+..+|+.+|+...-. .|.. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 578888888887643 23445556667655 44556788888888877652 4532 23334444567888888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHH-HHHHHhHh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKPTTEICA-CVVDMLGR---AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
++..+-.....++...|-..-|. .+..++.+ .-..+.-..++..|.-.-...+|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88887777777666666443332 23333333 334566666677774223355888888888899999999999999
Q ss_pred HHhhCCCCCchHHHHHHHH-----HcCCCHHHHHHHHHHH
Q 044812 453 LIQLEPENPSNYVSLSNLY-----ASSRRWDAVAELRTMM 487 (547)
Q Consensus 453 ~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~m 487 (547)
+..+... ...-...+..| .-..+++++.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 8887522 22222222222 2234566666655554
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.89 E-value=10 Score=31.45 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=39.2
Q ss_pred CCCCCH-HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 422 PVEPSP-SIWGALVSASVMHGN-----------SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 422 ~~~p~~-~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+.|+- .++..++.+|...+. +++|.+.|+++.+.+|.|. .|..-+.+. ++|-++..++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHH
Confidence 356664 466667776654332 6677777888888899764 566555554 347777777777
Q ss_pred CCCc
Q 044812 490 RGLK 493 (547)
Q Consensus 490 ~~~~ 493 (547)
.+..
T Consensus 136 ~~~~ 139 (186)
T PF06552_consen 136 QGLG 139 (186)
T ss_dssp SSS-
T ss_pred HHhh
Confidence 6654
No 347
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.43 E-value=43 Score=28.86 Aligned_cols=165 Identities=13% Similarity=-0.023 Sum_probs=81.9
Q ss_pred CCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHH
Q 044812 69 GQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSI 148 (547)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 148 (547)
.++..|+.+.-.| +..||-|.--+...|+++.|.+.|+...+.+..-+-...|.- -++--.|++.-|.+=+-..-
T Consensus 86 ~DftQaLai~P~m----~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-i~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 86 NDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred hhhhhhhhcCCCc----HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-eeeeecCchHhhHHHHHHHH
Confidence 4555555443333 357888888888889999999999888875433221112221 12344677887776666555
Q ss_pred HhCCC-CchhHHHHHHHHHHhcCChHHHHH-HhccCCCCChhhHHHHHHHHH-cCCCchhHHHHHHHHhhcC---C----
Q 044812 149 KIGFV-VDVILANSLMSMYVKCGKFSECLN-LFDEMPQRNVGSWNVRISGHA-SSGDFSLVVRSRRVFDQMK---R---- 218 (547)
Q Consensus 149 ~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~a~~~~~~~~---~---- 218 (547)
+.+.. |-...|--+. -..-+..+|.. +.++....|..-|...|-.+. -.-..+ .++.++. .
T Consensus 161 Q~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e------~l~~~~~a~a~~n~~ 231 (297)
T COG4785 161 QDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE------TLMERLKADATDNTS 231 (297)
T ss_pred hcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH------HHHHHHHhhccchHH
Confidence 54311 1112221111 22334455543 444555555455544333222 111111 1111111 1
Q ss_pred ---CChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 219 ---RNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 219 ---~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
.=+.+|--+..-+...|+.++|..+|+-.
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 11235555666666666666666666554
No 348
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.20 E-value=86 Score=32.16 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=37.6
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc-CCCHHHHHHHH
Q 044812 410 QLDRALDFIKTMPVEPSPSIWGALVSASV----MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS-SRRWDAVAELR 484 (547)
Q Consensus 410 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~ 484 (547)
+...|.++|......-.....-.+..+|. ...+.+.|..+++++.+.++ +.+...+...+.- .++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHH
Confidence 45566666665522222222222222221 22356666666666666662 2222222222221 15666655555
Q ss_pred HHHHhCCCc
Q 044812 485 TMMKDRGLK 493 (547)
Q Consensus 485 ~~m~~~~~~ 493 (547)
..+.+.|..
T Consensus 421 ~~~a~~g~~ 429 (552)
T KOG1550|consen 421 LYLAELGYE 429 (552)
T ss_pred HHHHHhhhh
Confidence 555555443
No 349
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.99 E-value=1.7 Score=39.72 Aligned_cols=90 Identities=11% Similarity=0.192 Sum_probs=65.4
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHH
Q 044812 407 RAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (547)
..|.++.|++.|... ...| ....|..=.+++.+.++...|++=+..+++++|+...-|-.-..+-...|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 346677777777665 3333 34455556667778888888888888888888888777877777777888888888888
Q ss_pred HHHHhCCCccCC
Q 044812 485 TMMKDRGLKKSP 496 (547)
Q Consensus 485 ~~m~~~~~~~~~ 496 (547)
....+.++.+..
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 888777776544
No 350
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.02 E-value=9.4 Score=27.70 Aligned_cols=42 Identities=10% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 449 AYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.+++.++.+|.|......++..+...|++++|.+.+-.+.+.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455556666666666666666666666666665555543
No 351
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.98 E-value=1e+02 Score=32.30 Aligned_cols=430 Identities=9% Similarity=-0.023 Sum_probs=222.1
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHIS-NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 101 (547)
|-.+..+....+.. ...++-.-+.+..-.| ....-...+..+.+.++++...+.+..- ..+.........+....|+
T Consensus 67 yl~y~~L~~~l~~~-~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~ 144 (644)
T PRK11619 67 YLEYRQLTQDLMNQ-PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQ 144 (644)
T ss_pred HHHHHHHHhccccC-CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCC
Confidence 44444444433322 2224444455554333 3334455566777888999888844332 3455555666778888999
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 044812 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181 (547)
Q Consensus 102 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 181 (547)
.++|.+....+-..|.. .+.....++..+...|.+. +...+.. +......|+...|..+...
T Consensus 145 ~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt----------------~~d~w~R-~~~al~~~~~~lA~~l~~~ 206 (644)
T PRK11619 145 QQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD----------------PLAYLER-IRLAMKAGNTGLVTYLAKQ 206 (644)
T ss_pred HHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC----------------HHHHHHH-HHHHHHCCCHHHHHHHHHh
Confidence 88888877777655532 3445555555554444332 2223332 3344456677777666666
Q ss_pred CCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChh--hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH-
Q 044812 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY--AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV- 258 (547)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~- 258 (547)
+..........++..+....+ +...+...+ ++.. .+-.+.-.-....+.+.|..++.......+..+...
T Consensus 207 l~~~~~~~a~a~~al~~~p~~------~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~ 279 (644)
T PRK11619 207 LPADYQTIASALIKLQNDPNT------VETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQ 279 (644)
T ss_pred cChhHHHHHHHHHHHHHCHHH------HHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHH
Confidence 532212122233333322222 122222211 1211 111111112245567889999987633333333322
Q ss_pred -HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCChhhHHHHHHHHH
Q 044812 259 -SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSF--NKDAITWSSIVSGYG 335 (547)
Q Consensus 259 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~ 335 (547)
....+.......+..+++...++...... .+......-+....+.++++.+...+..|.. .-...-..-+.+++.
T Consensus 280 ~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~ 357 (644)
T PRK11619 280 ELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLL 357 (644)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHH
Confidence 22333333333322445555554433222 2444455556666688999998888887651 122233455677777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH---HH--HHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC
Q 044812 336 LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI---NE--GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410 (547)
Q Consensus 336 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~---~~--a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 410 (547)
..|+.++|..+|+.+.. .. +|..++.+ .+.|.. .. ....-..+ .-.| --.-+..+...|.
T Consensus 358 ~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~~----~~~~----~~~ra~~L~~~g~ 422 (644)
T PRK11619 358 EQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPDSAL----TQGP----EMARVRELMYWNM 422 (644)
T ss_pred HcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchhhhh----ccCh----HHHHHHHHHHCCC
Confidence 78999999999998743 12 23333322 111211 00 00000000 0011 1122445667788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE---PENPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 411 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
...|...+..+....+......+.......|.++.++....+....+ -.-|..|...+..+.+.-..+.+.-.-=--
T Consensus 423 ~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~r 502 (644)
T PRK11619 423 DNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIAR 502 (644)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88888888776334555566666666778888888887776543321 122445666777776666666665433333
Q ss_pred HhCCCccCC
Q 044812 488 KDRGLKKSP 496 (547)
Q Consensus 488 ~~~~~~~~~ 496 (547)
++.++.|..
T Consensus 503 qES~f~p~a 511 (644)
T PRK11619 503 QESAWNPKA 511 (644)
T ss_pred HhcCCCCCC
Confidence 466676654
No 352
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.48 E-value=20 Score=27.98 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhC--CCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 445 MQDLAYKSLIQLE--PENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 445 ~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
.+.++|+.|...+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888887764 55666788888899999999999998875
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.46 E-value=28 Score=25.66 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044812 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353 (547)
Q Consensus 274 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 353 (547)
++|..+-+.+...+.. ...+--+-+..+...|++++|..+.+... .||...|..|-. .+.|-.+++...+.+|..+
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-YPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-CchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4455554444444311 22222233445677899999999998887 899888877754 3567777777777788777
Q ss_pred CCCCCHHHHH
Q 044812 354 GSKPDIITIV 363 (547)
Q Consensus 354 g~~p~~~~~~ 363 (547)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 44444443
No 354
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.44 E-value=31 Score=30.93 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=51.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh--
Q 044812 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK-- 304 (547)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 304 (547)
=|.+++..++|.+++.+.-.- -...-+......-..|-.|.+.+.+..+.++-.......-.-+..-|..+++.|..
T Consensus 89 GIQALAEmnrWreVLsWvlqy-Yq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQY-YQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHH-hcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 378889999999998876544 22222222334444455566777776666666655554333333345555555443
Q ss_pred ---cCCHHHHHHHH
Q 044812 305 ---CGSLDCARRVF 315 (547)
Q Consensus 305 ---~g~~~~A~~~~ 315 (547)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666666666
No 355
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.35 E-value=65 Score=30.76 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=48.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHH-cCCCHHHHHHHHHHHHh
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLEPE-NPSNYVSLSNLYA-SSRRWDAVAELRTMMKD 489 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 489 (547)
.+..+.+.|-+..|.++.+-+..++|. ||..-...++.|. +.+.++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 456678999999999999999999988 8888888888875 78889888888887654
No 356
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.89 E-value=61 Score=29.27 Aligned_cols=156 Identities=16% Similarity=0.054 Sum_probs=72.9
Q ss_pred hcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHH----hhhCCCCCCcchHHHHHHHHccCCCcH-HHH
Q 044812 67 LCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSN----MYYSNVSPDDFTLATISKLSGEIKDLN-VGM 141 (547)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~----m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~ 141 (547)
+++++++|.+++-.- ...+.+.|+...|-++-.. ..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345666666654321 2234455555444333322 233455555554445554444332211 122
Q ss_pred HHHHHHH---HhC--CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhc
Q 044812 142 LIHGLSI---KIG--FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM 216 (547)
Q Consensus 142 ~~~~~~~---~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~ 216 (547)
++.+.++ +.| ...|+.....+...|.+.|++.+|..-|-.-..++...+..++..+...|...+
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e----------- 139 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE----------- 139 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc-----------
Confidence 2222222 222 224667788888899999999999888765544444444334444444444332
Q ss_pred CCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 217 KRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 217 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
.+...-. .+-.|...++...|...+...
T Consensus 140 --~dlfi~R-aVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 140 --ADLFIAR-AVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHH-HHHHHHHTTBHHHHHHHHHHH
T ss_pred --hhHHHHH-HHHHHHHhcCHHHHHHHHHHH
Confidence 2222222 233456667777777777665
No 357
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.86 E-value=7.9 Score=32.08 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
+++|+.-|++++.++|+...++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 566777778888889999999999999997765
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.77 E-value=6.5 Score=27.37 Aligned_cols=45 Identities=2% Similarity=0.073 Sum_probs=31.5
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCchH---HHHHHHHHcCCCHHHHHHH
Q 044812 439 MHGNSEMQDLAYKSLIQLEPENPSNY---VSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 439 ~~~~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~ 483 (547)
...+.++|+..|+.+++..++.+.-| -.|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888887765544444 4556677778888777665
No 359
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.26 E-value=18 Score=25.89 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHH
Q 044812 38 LTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEAL 106 (547)
Q Consensus 38 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 106 (547)
.+.++++.+.++|+- +....+.+-.+-...|+.+.|.+++..+. ..+..+..++.++-..|.-.-|.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 347788888888843 55555555554456788999999999988 77788888888888877765554
No 360
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.78 E-value=34 Score=30.03 Aligned_cols=63 Identities=6% Similarity=-0.060 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.+...-.++...|++-++++.-..++...|.|..+|..-+.+....=+.++|..=|....+..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 344455677788999999999999999999999999999999998889999999888877654
No 361
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.45 E-value=1.1e+02 Score=31.75 Aligned_cols=160 Identities=13% Similarity=0.085 Sum_probs=90.9
Q ss_pred HHHHHHHHH-hccCchHHHHHHHHHHHhCCCCChh-----HHHHHHHHHHhcCCchhHHHHhccCCC--------CCcch
Q 044812 23 VQHFLQVSA-THRSLKLTKQSHSQILSLGHISNPF-----VSTKLITAYALCGQPTQSQLVFNSIQH--------KDVYL 88 (547)
Q Consensus 23 ~~~~~~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~ 88 (547)
.-.++.+|. ...+++.|+..++......-.++-. ....++..+.+.+... |....++..+ +....
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 444555554 6789999999988665554333322 1234455666655555 8877776532 11222
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHhhhCC---CCCCcchHHHHHHHH--ccCCCcHHHHHHHHHHHHhCC---------C
Q 044812 89 YNSL-INGYVKNHGHNEALELFSNMYYSN---VSPDDFTLATISKLS--GEIKDLNVGMLIHGLSIKIGF---------V 153 (547)
Q Consensus 89 ~~~l-l~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~g~---------~ 153 (547)
+..+ +..+...+++..|.+.++.+...- ..|-...+-.++.+. .+.+..+.+.+.++.+..... .
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 3333 222333479999999998887542 222333344444443 344556667777766643322 2
Q ss_pred CchhHHHHHHHHH--HhcCChHHHHHHhccCC
Q 044812 154 VDVILANSLMSMY--VKCGKFSECLNLFDEMP 183 (547)
Q Consensus 154 ~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 183 (547)
|-..++..+++.+ ...|+++.+...++++.
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666666654 45778777777666654
No 362
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.05 E-value=24 Score=30.66 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCHH-------HHHHHHHHHHhhC--CCC----CchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 429 IWGALVSASVMHGNSE-------MQDLAYKSLIQLE--PEN----PSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
++..+...|...|+.+ .|.+.|+++.+.+ |.. ......++....+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4555566666666643 4455555555443 222 3456678888889999999999999887544
No 363
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.63 E-value=9.2 Score=33.22 Aligned_cols=117 Identities=9% Similarity=0.014 Sum_probs=68.4
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKPTT-EICACVVDMLGRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGNSE 444 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~ 444 (547)
.|.....++.|+..|.+.+ .+.|+. .-|+.=+.++.+..+++.+..=-.+. .+.||.. ....+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3556667778887776665 446665 44455566666777777665544433 4556655 4445556666777788
Q ss_pred HHHHHHHHHHhhC-----CCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 445 MQDLAYKSLIQLE-----PENPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 445 ~a~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
.|+..+.++..+. +.-......|..+-...=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888875542 222334445554444444444555555543
No 364
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.55 E-value=33 Score=25.13 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 339 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++|+....+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 33455666667777778888888888888888888888888888877654332 3445655554
No 365
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=71.78 E-value=84 Score=29.04 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cC----cHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHhHhcCCH
Q 044812 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGR--SG----LINEGLEIYNSVINTYRIKP--TTEICACVVDMLGRAGQL 411 (547)
Q Consensus 340 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 411 (547)
+++.+.+++.|.+.|++-+..+|-+....... .. ....|..+|+.|.+.+.+-- +-..+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788888999888777666553322222 22 35678889999988765532 33344444332 33443
Q ss_pred ----HHHHHHHHhC---CCCC-CHH-HHHHHHHHHHHcCC--HHHHHHHHHHHHhhC-CCCCchHHHHHHHHHcCCCHHH
Q 044812 412 ----DRALDFIKTM---PVEP-SPS-IWGALVSASVMHGN--SEMQDLAYKSLIQLE-PENPSNYVSLSNLYASSRRWDA 479 (547)
Q Consensus 412 ----~~A~~~~~~~---~~~p-~~~-~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 479 (547)
+.++..|+.+ ++.. |.. ....++..+..... ..++.++++.+.+.+ +.....|..++-.-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3334444443 3333 333 33333332222222 456777888887776 4344455555554444444423
Q ss_pred HHHHHH
Q 044812 480 VAELRT 485 (547)
Q Consensus 480 A~~~~~ 485 (547)
..+-+.
T Consensus 236 ~~~~i~ 241 (297)
T PF13170_consen 236 IVEEIK 241 (297)
T ss_pred HHHHHH
Confidence 333333
No 366
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.45 E-value=13 Score=36.77 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=56.8
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHhHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKP--TTEICACVVDMLGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a 446 (547)
..|+...|...+...... .| .-...-.|.+.+.+.|...+|-.++.+. . ....+.++..+++++.-..+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 346666666666555422 33 1122333555555666666666665443 1 123344666677777777777777
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHH
Q 044812 447 DLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
++.|+++.++.|.++..-+.|...
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 777777777777777666655544
No 367
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.44 E-value=1.5e+02 Score=31.68 Aligned_cols=162 Identities=12% Similarity=0.053 Sum_probs=83.2
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHH-----HHhhccCCc--hhHHHHHHHHHHcC---C
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVL-----PTCSSLIGL--SGGKQIHGFAIRKE---L 288 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll-----~~~~~~~~~--~~a~~~~~~~~~~~---~ 288 (547)
.....+..+..+..-.|++++|..+..+. .+..-.-+...+..+. ..+...|.. ......+....... .
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a-~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQA-EQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 35667777888888889999998888766 3332233333332222 234445532 22222232222211 0
Q ss_pred ---CCchhHHHHHHHHHHhcCCHHHHHHHHh---cCC--CCCCh--hh--HHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 044812 289 ---NHDVSLCNALIDMYSKCGSLDCARRVFE---DSS--FNKDA--IT--WSSIVSGYGLHGKGHEAVLLYNKMVCLGSK 356 (547)
Q Consensus 289 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~--~~~~~--~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 356 (547)
.+-..++..+..++.+ ++.+..-.. +.+ ..|.. .. +..|+..+...|+.++|...+.++......
T Consensus 574 ~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred ccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 1122344445555544 332222221 111 01222 22 236778888999999999998888765333
Q ss_pred C----CHHHHHHHHH--HHhccCcHHHHHHHHHH
Q 044812 357 P----DIITIVGVLS--ACGRSGLINEGLEIYNS 384 (547)
Q Consensus 357 p----~~~~~~~l~~--~~~~~g~~~~a~~~~~~ 384 (547)
+ +..+-...+. .....|+...+.....+
T Consensus 651 ~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 651 GQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 3 3222222222 24567887777776654
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.38 E-value=12 Score=22.75 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=13.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCL 353 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~ 353 (547)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555666666666666655543
No 369
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=70.09 E-value=43 Score=25.31 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888888766
No 370
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.79 E-value=49 Score=26.55 Aligned_cols=82 Identities=10% Similarity=0.104 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCC-----CCCcchHHHHHHHHccCCC-cHHHHHHHHHHHHhCCCCchhHHHH
Q 044812 88 LYNSLINGYVKNHGHNEALELFSNMYYSNV-----SPDDFTLATISKLSGEIKD-LNVGMLIHGLSIKIGFVVDVILANS 161 (547)
Q Consensus 88 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-----~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ 161 (547)
..|+++.-....+++.-.+.+++.+..-.. .-+..+|++++.+.++..- --.+..+|+.+.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 467788887888888888888888743211 2367789999999977776 5567888999998888999999999
Q ss_pred HHHHHHhc
Q 044812 162 LMSMYVKC 169 (547)
Q Consensus 162 l~~~~~~~ 169 (547)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99887664
No 371
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.51 E-value=45 Score=24.98 Aligned_cols=78 Identities=9% Similarity=0.060 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
.++|..+.+.+...+. ....+--+-+..+.+.|+++.|+..=.... .||...|.+|-. .+.|-.+++...+.++..
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~-~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHC-YPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS---GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCC-CccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 4566666666666553 222333334555677888888844334445 678877766644 467777788888877766
Q ss_pred cC
Q 044812 353 LG 354 (547)
Q Consensus 353 ~g 354 (547)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 65
No 372
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=68.21 E-value=1.1e+02 Score=28.72 Aligned_cols=111 Identities=15% Similarity=0.055 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhcCC---CCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044812 375 INEGLEIYNSVINTYRI---KPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 451 (547)
.+.|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56778888888764111 345566666777777788877666666666545677788889999998999999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHHcCCC--HHHHHHHHH
Q 044812 452 SLIQLEPENPSNYVSLSNLYASSRR--WDAVAELRT 485 (547)
Q Consensus 452 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 485 (547)
.+...+.-...-...++..+...+. .+.+.+.+.
T Consensus 226 ~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHH
Confidence 9888541222223344444442332 355555544
No 373
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=67.80 E-value=1.1e+02 Score=28.99 Aligned_cols=141 Identities=15% Similarity=0.160 Sum_probs=89.5
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhCCCCC------C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC-----Cc
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTMPVEP------S--PSIWGALVSASVMHGNSEMQDLAYKSLIQLE--PEN-----PS 462 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~-----~~ 462 (547)
-..|...+...|++++|.+++.+.+++. . .....--++.|.-.+|+-.|.-+-+++...- .++ ..
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlk 213 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLK 213 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHH
Confidence 3456777888999999999999885321 0 0011112456777888888888888876542 222 22
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCcCC
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPH 542 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 542 (547)
.|+.++......+.+=++-+.++...+.|-.....--|+.+...+-.|+.- .|+..+....+..+. ..++..-.|+
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~L---Ap~dneQsdll~~is-~dKkL~e~p~ 289 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVL---APHDNEQSDLLARIS-NDKKLSELPD 289 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEee---cCCCcHHHHHHHHHh-cccccccCcc
Confidence 677888888899999999999999988776555444566665555455553 344444555554443 3333333343
No 374
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=66.47 E-value=1.1e+02 Score=28.09 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=12.8
Q ss_pred HHHHHcCCCHHHHHHHHHH
Q 044812 468 SNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~ 486 (547)
+....+.++|++|.+.++-
T Consensus 253 ~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHhhcCHHHHHHHHHH
Confidence 4445667777777777764
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.29 E-value=17 Score=25.43 Aligned_cols=47 Identities=9% Similarity=0.177 Sum_probs=20.1
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
...+.++|+..|....++..-.++ -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555443211111 22334444455555555444443
No 376
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.80 E-value=26 Score=29.87 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 424 EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 424 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
.|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444445555555554444444444
No 377
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.58 E-value=53 Score=24.31 Aligned_cols=78 Identities=9% Similarity=-0.049 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 044812 36 LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYS 115 (547)
Q Consensus 36 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 115 (547)
-.+|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|-.+++..-+..|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34455554444444311 22222222335667788888888888777777777766543 3566666666666666655
Q ss_pred C
Q 044812 116 N 116 (547)
Q Consensus 116 ~ 116 (547)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 4
No 378
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.36 E-value=58 Score=29.34 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=52.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----
Q 044812 92 LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV---- 167 (547)
Q Consensus 92 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~---- 167 (547)
=|.+++..++|.+++...-+-.+.--+..+.....-|-.|.+.+++..+.++-..-++..-.-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3667777788887776554443321112223344445567777777777777666655432233344666655554
Q ss_pred -hcCChHHHHHHhc
Q 044812 168 -KCGKFSECLNLFD 180 (547)
Q Consensus 168 -~~g~~~~A~~~~~ 180 (547)
=.|.+++|+++..
T Consensus 169 lPLG~~~eAeelv~ 182 (309)
T PF07163_consen 169 LPLGHFSEAEELVV 182 (309)
T ss_pred hccccHHHHHHHHh
Confidence 4588888888873
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.88 E-value=1.4e+02 Score=28.88 Aligned_cols=52 Identities=8% Similarity=-0.104 Sum_probs=25.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHHHH
Q 044812 335 GLHGKGHEAVLLYNKMVCLGSKPDII--TIVGVLSACG--RSGLINEGLEIYNSVIN 387 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 387 (547)
.+.+++..|.+++..+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3555666666666666554 344333 2233333322 33445566666655543
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.48 E-value=1.1e+02 Score=27.78 Aligned_cols=42 Identities=7% Similarity=-0.014 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhc
Q 044812 36 LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFN 79 (547)
Q Consensus 36 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 79 (547)
...|.++|..++++.- .+.+-+.++..+....+..+|...+.
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHH
Confidence 3566888888887742 33444566777777777766666553
No 381
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=64.43 E-value=54 Score=25.86 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=46.5
Q ss_pred CCchhHHHHHHHHhHhcCCH---HHHHHHHHhC-C-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 392 KPTTEICACVVDMLGRAGQL---DRALDFIKTM-P-VEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
.++..+--.+..++.+..+. .+-+.++++. + -.|+ .....-|.-++.+.+++++++++.+.+++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 44555555566666666543 4445566655 2 2332 2234445667889999999999999999999887653
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.09 E-value=46 Score=33.32 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH-hcCCHHHHHHHHHhC-CCCC--CHHH
Q 044812 356 KPDIITIVGVLSACGRS--GLINEGLEIYNSVINTYRIKPTTEICACVVDMLG-RAGQLDRALDFIKTM-PVEP--SPSI 429 (547)
Q Consensus 356 ~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p--~~~~ 429 (547)
-|+..+...++.-.... ..-+.|-.++..|. . .+.|--...| +...|. -.|+...|...+... ...| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35555555544433221 12233444444443 2 2333222222 233343 468899998888765 3344 2234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|.....+.|-...|..++.+.+.+....|-++..++++|....+.+.|++.++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 55677777888889999999999999887788899999999999999999999999876654
No 383
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.88 E-value=27 Score=21.69 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=31.6
Q ss_pred HHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 044812 27 LQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITA 64 (547)
Q Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 64 (547)
+....+.|-.+++..+++.|.+.|+..++..+..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33455678888999999999999999999999888764
No 384
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.71 E-value=1.5e+02 Score=29.16 Aligned_cols=299 Identities=10% Similarity=0.014 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHH-------------HHHHHHhCCCCchhHHHHHHHH
Q 044812 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLI-------------HGLSIKIGFVVDVILANSLMSM 165 (547)
Q Consensus 99 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~-------------~~~~~~~g~~~~~~~~~~l~~~ 165 (547)
.+.++..++++..+...|.......++.....+.+.|........ -+.+--.+.+.....+-.....
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi 109 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVI 109 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhee
Q ss_pred HHhcCChHHHHHHhccCCCCChh--------hHHHHHHHHHcCCCchhHHHHHHHHhhcC---CCChhhHHHHHHHHHHC
Q 044812 166 YVKCGKFSECLNLFDEMPQRNVG--------SWNVRISGHASSGDFSLVVRSRRVFDQMK---RRNVYAWTAMINGYVQN 234 (547)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 234 (547)
|....++..|+++......+-.. ........+....+.+++..-+.++..+. ......-+.=.....+.
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt 189 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKT 189 (696)
T ss_pred eeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhccc
Q ss_pred CCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044812 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (547)
+-...|..-+.-. .|.......-++++....++..+..-.+...... ..+....-.--..+.-.|++.+|.++
T Consensus 190 ~s~~aAe~s~~~a------~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~Kl 262 (696)
T KOG2471|consen 190 LSPSAAERSFSTA------DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKL 262 (696)
T ss_pred CCcchhcccchhh------ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHH
Q ss_pred HhcCCCCCChh---h--------HHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCCH----------HHHHHHH
Q 044812 315 FEDSSFNKDAI---T--------WSSIVSGYGLHGKGHEAVLLYNKMVC-------LGSKPDI----------ITIVGVL 366 (547)
Q Consensus 315 ~~~~~~~~~~~---~--------~~~li~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~----------~~~~~l~ 366 (547)
+...++..... | ||.|.-.+.+.|.+..+..+|.+..+ .|++|.. .......
T Consensus 263 L~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG 342 (696)
T KOG2471|consen 263 LLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCG 342 (696)
T ss_pred HHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhh
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (547)
-.+...|+.-.|.+.|.+....+ ..++..|..|..+|.
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
No 385
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.67 E-value=1.2e+02 Score=27.49 Aligned_cols=26 Identities=4% Similarity=0.236 Sum_probs=13.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHh
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKT 420 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 420 (547)
...+..+.+-|++.++.+.+.++..+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34444555555555555555555443
No 386
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=62.51 E-value=1.8e+02 Score=29.42 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=54.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcch-HHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 044812 85 DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT-LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLM 163 (547)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 163 (547)
+-..|..+|.---.....+.+..++..++.. -|.... |......=.+.|..+.+..+|+..+. |++.....|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4456666665444444455666666666643 244332 33344444566777777888877765 3555555665555
Q ss_pred HHHH-hcCChHHHHHHhccCC
Q 044812 164 SMYV-KCGKFSECLNLFDEMP 183 (547)
Q Consensus 164 ~~~~-~~g~~~~A~~~~~~~~ 183 (547)
..+. ..|+.+.....|+...
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHH
Confidence 4433 3456666666666554
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.15 E-value=52 Score=25.50 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=37.5
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 420 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
.+.+-|++.+...-+.+|.+.+|+..|.++|+-+...-++....|-.++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3456788888899999999999999999999988776655444555443
No 388
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.01 E-value=40 Score=26.97 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 411 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|...-...+.+|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456677777775 344445556667789999999999999999999999988888888876654
No 389
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=61.90 E-value=1.3e+02 Score=27.59 Aligned_cols=115 Identities=10% Similarity=-0.069 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 044812 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG-------QLDRALDFIKTMPVEPSPSIWGALVSASVM----HGN 442 (547)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 442 (547)
+..+|...|++..+. |..+.......+...|...+ +...|...+.++-..-+......|...|.. ..+
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666544 43332122222333333221 223566666665222244444444444432 346
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC---------------CHHHHHHHHHHHHhCCC
Q 044812 443 SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR---------------RWDAVAELRTMMKDRGL 492 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~ 492 (547)
.++|...|+++.+.+. ......+. .+...| +...|...+......+.
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 7788888888777765 44455555 444444 66677777777666654
No 390
>PRK10941 hypothetical protein; Provisional
Probab=61.55 E-value=37 Score=30.73 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=48.7
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
.+.+-.+|.+.++++.|+...+.+ .+.|+ +.-+.--+-.|.+.|.+..|..-++..++..|++|.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 344566777888888888888876 44454 4456666667888888888888888888888877654
No 391
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=61.48 E-value=1.7e+02 Score=28.91 Aligned_cols=62 Identities=8% Similarity=0.041 Sum_probs=35.4
Q ss_pred CcchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhcCCchhHHHHhccC
Q 044812 19 TSATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITA-YALCGQPTQSQLVFNSI 81 (547)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~ 81 (547)
+...-..++....+.+.+.....++..|+... +.++..|-.-... |-...+++.|..+|..-
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 44445566666666666777788888887764 3334444333332 33333477777776554
No 392
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.44 E-value=36 Score=24.86 Aligned_cols=53 Identities=8% Similarity=0.053 Sum_probs=35.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC----C-----CchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPE----N-----PSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
..+.|++..|.+.+.+....... . ......++......|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35678888887777766654211 1 12344567778888999999999988754
No 393
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=60.47 E-value=29 Score=31.44 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=33.4
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
.+.|+.++|..+|+.++.+.|.++.+...++......++.-+|..++-+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 4567777777777777777777777777777666666666666666544
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.07 E-value=45 Score=28.42 Aligned_cols=51 Identities=10% Similarity=-0.011 Sum_probs=31.5
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
..++.+......+.+.+.....|++.+|..++..+...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444544444444444333344677777777777777777777777777666
No 395
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.12 E-value=67 Score=24.29 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhh
Q 044812 88 LYNSLINGYVKNHGHNEALELFSNMYY 114 (547)
Q Consensus 88 ~~~~ll~~~~~~~~~~~A~~~~~~m~~ 114 (547)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466667777777777777777766655
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.17 E-value=34 Score=24.52 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=18.2
Q ss_pred hcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCC
Q 044812 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202 (547)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 202 (547)
..|+.+.|.+++..+. ++...+..++.++-..|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 4455666666666665 554455555555444444
No 397
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=57.54 E-value=23 Score=30.72 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=32.8
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.+.+|.+.+.+++.+++++-|.....|..++..-.+.|+++.|.+-+++..+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34556666666666666666666666666666666666666666666665443
No 398
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.34 E-value=1.4e+02 Score=26.42 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=74.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhH-HHHHHHHhHhcCCH
Q 044812 334 YGLHGKGHEAVLLYNKMVCLGSKPDII-TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEI-CACVVDMLGRAGQL 411 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~ 411 (547)
|....+++.|...|.+.+. +.|+.. -|+.=+.++.+..+++.+..--.... .+.|+..- .-.+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 5556678889998887777 577764 45556667778888888877666665 45676543 33445556667777
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 412 DRALDFIKTM-------PVEPSPSIWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 412 ~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
++|+..+.+. ++.|...++..|..+--..=...+..++.+.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 7777777665 4555666777777654444455555555544
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.11 E-value=54 Score=23.91 Aligned_cols=27 Identities=22% Similarity=0.095 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
...+.......|++++|...++++++.
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334555677889999999999998876
No 400
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.89 E-value=2e+02 Score=28.22 Aligned_cols=122 Identities=7% Similarity=-0.008 Sum_probs=82.8
Q ss_pred HHHhccCchHH-HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhH
Q 044812 29 VSATHRSLKLT-KQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNE 104 (547)
Q Consensus 29 ~~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~ 104 (547)
---..|++..| +++++-+...-..|+.. ......+...|+++.+.+....... ....+-.++++..-+.|++++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 33445777777 55555555543344433 3334456777999999998877654 455677888899999999999
Q ss_pred HHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCC
Q 044812 105 ALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFV 153 (547)
Q Consensus 105 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 153 (547)
|..+-+-|....+. ++.............|-++++...|+++...+.+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 99999999876654 4444333333444567788888888888776533
No 401
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=56.86 E-value=8.9 Score=36.97 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=68.7
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhH-HHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCC
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEI-CACVVDMLGRAGQLDRALDFIKTM-PVEPSPS-IWGALVSASVMHGN 442 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~ 442 (547)
.......+.++.|..++.++++. .|+... |..=..++.+.+++..|+.=+.+. ...|... .|.-=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 44566778899999999999854 675444 443447788888888887766554 4455433 44444567777888
Q ss_pred HHHHHHHHHHHHhhCCCCCchH
Q 044812 443 SEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 443 ~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
+.+|...|+......|+++..-
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHH
Confidence 9999999999999999876543
No 402
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.46 E-value=26 Score=23.20 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=10.6
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHh
Q 044812 398 CACVVDMLGRAGQLDRALDFIKT 420 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~ 420 (547)
.-.++.+|...|++++|.+++++
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444455555555555554443
No 403
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=55.59 E-value=60 Score=28.68 Aligned_cols=134 Identities=12% Similarity=0.131 Sum_probs=74.1
Q ss_pred HhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCCchHHHHHHHHHcCCC---HH
Q 044812 406 GRAGQLDRALDFIKTMPVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE---PENPSNYVSLSNLYASSRR---WD 478 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~ 478 (547)
|-.|++++++..++.++.. -|...+...+.--++.|.++...-+|.+.+... .-.|.....++......|+ .+
T Consensus 21 CLNr~Fd~vL~~~R~~p~~emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~~~L~V~P~lLCDi~nlal~~~k~fip~ 100 (267)
T PF05476_consen 21 CLNREFDDVLAELRQIPVDEMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRRKVLLVEPRLLCDIGNLALHEGKYFIPS 100 (267)
T ss_pred HhhhhHHHHHHHHHcCcHhHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccccccChhHHHHHHHHHHhcCCCcCHH
Confidence 4457888888888877532 344455555555567788888888887776543 3356677777777777776 34
Q ss_pred HHHHHHHHHHhCCCc--cCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCC
Q 044812 479 AVAELRTMMKDRGLK--KSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAASPHL 543 (547)
Q Consensus 479 ~A~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 543 (547)
.....++++-..+.. ....+.+-++..++..|..|....-...|.+..+ .++| +.+.+|+.
T Consensus 101 ql~~hy~~~y~~~~~~~e~~~~~YeLlRikVE~FAkgt~~~t~F~EKWkvf---Ledm-Dn~Lp~~~ 163 (267)
T PF05476_consen 101 QLYMHYQKFYGKGTSQPEWDQYEYELLRIKVESFAKGTMHKTTFREKWKVF---LEDM-DNTLPPQY 163 (267)
T ss_pred HHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHhcCCcccchHHHHHHHH---HHHH-hccCCCCC
Confidence 455555555444431 1112222223334444444444444444444444 3333 44455554
No 404
>PF13934 ELYS: Nuclear pore complex assembly
Probab=55.33 E-value=1.5e+02 Score=26.14 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=9.6
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 044812 330 IVSGYGLHGKGHEAVLLYNK 349 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~ 349 (547)
++.++...|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444555555555444
No 405
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.08 E-value=32 Score=31.32 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=34.3
Q ss_pred CCChhh-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044812 321 NKDAIT-WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365 (547)
Q Consensus 321 ~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 365 (547)
.||..+ |+..|..-.+.||+++|+.++++..+.|+.--..+|..-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 455554 678888889999999999999999998876555555443
No 406
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.61 E-value=18 Score=37.84 Aligned_cols=76 Identities=16% Similarity=0.361 Sum_probs=53.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 444 (547)
+|..+.+.|..+-|+.+.+.-..+ ......+|+++.|++.-.+.. +..+|..|+......|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 445556666666666654433222 233456788888888887774 7778888998888889998
Q ss_pred HHHHHHHHHHhh
Q 044812 445 MQDLAYKSLIQL 456 (547)
Q Consensus 445 ~a~~~~~~~~~~ 456 (547)
-|+..|++....
T Consensus 690 IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 690 IAEMCYQRTKNF 701 (1202)
T ss_pred HHHHHHHHhhhh
Confidence 888888886543
No 407
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.39 E-value=1.1e+02 Score=23.87 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHH
Q 044812 342 EAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNS 384 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 384 (547)
.+.++|..|...|+--. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666655443 34455555556666666666666653
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.22 E-value=3.3e+02 Score=29.27 Aligned_cols=216 Identities=14% Similarity=0.061 Sum_probs=115.0
Q ss_pred hccCCchhHHHHHHHHHHcCCCCch-------hHHHHHH-HHHHhcCCHHHHHHHHhc----CC---CCCChhhHHHHHH
Q 044812 268 SSLIGLSGGKQIHGFAIRKELNHDV-------SLCNALI-DMYSKCGSLDCARRVFED----SS---FNKDAITWSSIVS 332 (547)
Q Consensus 268 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~g~~~~A~~~~~~----~~---~~~~~~~~~~li~ 332 (547)
....++.+|..+..++...-..|+. ..++.+- ......|+++.|.++.+. .+ ..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4455666777666666543222221 1222221 223346788888887764 21 1345666777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHH---HHH--HHHhccCcH--HHHHHHHHHHHHhcCCC-----CchhHHHH
Q 044812 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIV---GVL--SACGRSGLI--NEGLEIYNSVINTYRIK-----PTTEICAC 400 (547)
Q Consensus 333 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~l~--~~~~~~g~~--~~a~~~~~~~~~~~~~~-----~~~~~~~~ 400 (547)
+..-.|++++|..+.....+.--.-+...|. .+. ..+..+|+. .+.+..|......+... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998877765542222322222 222 235566733 33333444433322111 12234444
Q ss_pred HHHHhHhcCCHHHHHHH----HHhC---CCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-Cch-HH----
Q 044812 401 VVDMLGRAGQLDRALDF----IKTM---PVEPSPSI--WGALVSASVMHGNSEMQDLAYKSLIQLEPEN-PSN-YV---- 465 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~----~~~~---~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~-~~---- 465 (547)
+..++.+ ++.+..- ++-. ...|-... +..|.......|+.++|...++++..+...+ +.. |.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555544 3333222 2211 11222222 2367788889999999999999998764222 222 22
Q ss_pred -HHHHHHHcCCCHHHHHHHHHH
Q 044812 466 -SLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 466 -~l~~~~~~~g~~~~A~~~~~~ 486 (547)
.-.......|+...+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222234567898888887765
No 409
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=52.02 E-value=33 Score=31.22 Aligned_cols=80 Identities=8% Similarity=0.109 Sum_probs=55.2
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 044812 391 IKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGA-LVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467 (547)
Q Consensus 391 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 467 (547)
+.-|+..|...+.-..+.|.+.+.-.++.+. ...| |...|-. --.-+...++++.+..+|.+.++.+|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3446667766666666667777777777665 3344 4444432 22234578899999999999999999999988876
Q ss_pred HHH
Q 044812 468 SNL 470 (547)
Q Consensus 468 ~~~ 470 (547)
.+.
T Consensus 183 fr~ 185 (435)
T COG5191 183 FRM 185 (435)
T ss_pred HHH
Confidence 654
No 410
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.65 E-value=72 Score=29.57 Aligned_cols=86 Identities=10% Similarity=0.124 Sum_probs=64.2
Q ss_pred HHHhHhcCCHHHHHHHHHhC--C--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 402 VDMLGRAGQLDRALDFIKTM--P--VEP--SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~--~--~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
.+-|.+..++..|...|.+- . -.| +.+.|+.=..+....|++..++.=-.+++..+|.+...|..=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 44566677777777777664 1 123 34566666666677889999999889999999999999998888888888
Q ss_pred CHHHHHHHHHHH
Q 044812 476 RWDAVAELRTMM 487 (547)
Q Consensus 476 ~~~~A~~~~~~m 487 (547)
++++|....++.
T Consensus 168 ~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 168 RFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHhhh
Confidence 887777766654
No 411
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=51.31 E-value=19 Score=25.02 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHHHHHHcCCcCCC
Q 044812 519 CSVSIYEMLDDLILIMRGAAASPHL 543 (547)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~p~~ 543 (547)
+..++++.+++...+++..|+.||.
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDi 30 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDI 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----E
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 3456788889999999999999994
No 412
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=51.22 E-value=1.5e+02 Score=25.10 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDS 318 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (547)
.-.+.|.....+.++|.++.|..++++.
T Consensus 180 rCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 180 RCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred hhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 3445667777888888888888888763
No 413
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=51.10 E-value=2.6e+02 Score=27.77 Aligned_cols=91 Identities=9% Similarity=0.013 Sum_probs=56.2
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTMP-V-EPSPSIWGALVSASV--MHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
-+.+++-+.+.|-..+|...+..+. . .|+...|..++..-. ..-+..-+.++|+.+...-..++..|......-..
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELP 542 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhcc
Confidence 3456666677777777777777662 1 345556665554321 22346667777777766543667777777666667
Q ss_pred CCCHHHHHHHHHHHH
Q 044812 474 SRRWDAVAELRTMMK 488 (547)
Q Consensus 474 ~g~~~~A~~~~~~m~ 488 (547)
.|..+.+-.++.+..
T Consensus 543 ~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 543 LGRPENCGQIYWRAM 557 (568)
T ss_pred CCCcccccHHHHHHH
Confidence 777777666655543
No 414
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.04 E-value=1.9e+02 Score=29.65 Aligned_cols=84 Identities=10% Similarity=0.043 Sum_probs=65.1
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCH
Q 044812 406 GRAGQLDRALDFIKTM-PVEP-S------PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p-~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 477 (547)
.+..++..+.++|..- ..-| | ......+--+|....+.+.|.++++++.+.+|.++-.-..+..+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 4567788888888653 2112 1 224556666788888999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHh
Q 044812 478 DAVAELRTMMKD 489 (547)
Q Consensus 478 ~~A~~~~~~m~~ 489 (547)
++|...+.....
T Consensus 445 e~AL~~~~~~~s 456 (872)
T KOG4814|consen 445 EEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh
Confidence 999998877654
No 415
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=50.93 E-value=3.1e+02 Score=28.60 Aligned_cols=123 Identities=12% Similarity=0.064 Sum_probs=69.5
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhC----CCCChhHHHHH-HHHHHhcCCchhHHHHhccCCC-------CCcchHHHH
Q 044812 25 HFLQVSATHRSLKLTKQSHSQILSLG----HISNPFVSTKL-ITAYALCGQPTQSQLVFNSIQH-------KDVYLYNSL 92 (547)
Q Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~l 92 (547)
.++.++...+... |...++...+.- ..+-...+..+ +..+...+++..|.+.++.+.. |.....-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 3445555554444 766666655432 22333444444 3333344799999999987642 233344445
Q ss_pred HHHHH--hcCChhHHHHHHHHhhhCCC---------CCCcchHHHHHHHHc--cCCCcHHHHHHHHHHH
Q 044812 93 INGYV--KNHGHNEALELFSNMYYSNV---------SPDDFTLATISKLSG--EIKDLNVGMLIHGLSI 148 (547)
Q Consensus 93 l~~~~--~~~~~~~A~~~~~~m~~~~~---------~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 148 (547)
+.++. +.+.++++.+.++.+..... .|-..+|..+++.++ ..|+++.+...++++.
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54443 45667888888887743221 234456666766554 5577667776666554
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.13 E-value=29 Score=31.62 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHH
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSL 260 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~ 260 (547)
-|+..|....+.||+++|++++++. ++.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEA-e~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEA-ERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCchHHHHH
Confidence 4678899999999999999999999 777765544444
No 417
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.08 E-value=1.2e+02 Score=23.61 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044812 343 AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402 (547)
Q Consensus 343 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 402 (547)
..+-++.+..-.+.|++.....-+++|-+.+++..|.++|+-+..+. .+....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 34455555666778888888888888888888888888888775542 33333455444
No 418
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.02 E-value=1.3e+02 Score=23.55 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhC--CCCCchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 446 QDLAYKSLIQLE--PENPSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 446 a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
..++|..+.+.+ ...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566788777654 5556678888888999999999999886
No 419
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=48.54 E-value=3.4e+02 Score=28.35 Aligned_cols=82 Identities=12% Similarity=0.220 Sum_probs=35.5
Q ss_pred HHHHHhcCChHHHHHHhccC--CCCChhhHHHHHHHHHcCCCchhHHHH-HHHHhhcC-CCChhhHHHHHHHHHHC---C
Q 044812 163 MSMYVKCGKFSECLNLFDEM--PQRNVGSWNVRISGHASSGDFSLVVRS-RRVFDQMK-RRNVYAWTAMINGYVQN---G 235 (547)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~a-~~~~~~~~-~~~~~~~~~li~~~~~~---~ 235 (547)
..++.-+|+++.|.+.+-+. ...+.+.+...+. ..|-+...... ..++..-. .+...-+..||..|.+. .
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~---~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALA---YYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHH---HTT------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHH---HcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 34556689999999988772 2223333333332 22222110000 01111110 11124567788877764 5
Q ss_pred CHHHHHHHHHHc
Q 044812 236 DLDEALVLFLEM 247 (547)
Q Consensus 236 ~~~~A~~~~~~m 247 (547)
+...|+++|--+
T Consensus 342 d~~~Al~Y~~li 353 (613)
T PF04097_consen 342 DPREALQYLYLI 353 (613)
T ss_dssp -HHHHHHHHHGG
T ss_pred CHHHHHHHHHHH
Confidence 788888888766
No 420
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.89 E-value=3.6e+02 Score=28.42 Aligned_cols=172 Identities=18% Similarity=0.225 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhh----------HHHHHHHHHhcCChHH
Q 044812 276 GKQIHGFAIRKELNHD---VSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAIT----------WSSIVSGYGLHGKGHE 342 (547)
Q Consensus 276 a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------~~~li~~~~~~~~~~~ 342 (547)
-..++.+|...--.|+ ..+...++-.|....+++...++.+.+.--||..- |.-.+.--.+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 3345555555433343 33445566666667777777777766543343221 2112222234466677
Q ss_pred HHHHHHHHHHc--CCCCCHHH-----HHH--HHHHHhccCcHHHHHHHHHHHHHhcCCCCchh---HHHHHHH-------
Q 044812 343 AVLLYNKMVCL--GSKPDIIT-----IVG--VLSACGRSGLINEGLEIYNSVINTYRIKPTTE---ICACVVD------- 403 (547)
Q Consensus 343 a~~~~~~m~~~--g~~p~~~~-----~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~------- 403 (547)
|+.+.-.|.+. .+.||... |.- +-..|...+..+.|.+.|++.. .+.|... .+..|+.
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhcc
Confidence 77776666554 24555322 211 1122445556667777777654 3355432 2222222
Q ss_pred --------------HhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 404 --------------MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 404 --------------~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+++.|.++.-.++|+- . ..+.+-.-.+++.+|.+.-+.|.+++|+.
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWdV-------~---~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWDV-------A---TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHhH-------H---HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 22333333333333321 1 22344456788999999999999988864
No 421
>PRK09857 putative transposase; Provisional
Probab=47.86 E-value=1.2e+02 Score=27.99 Aligned_cols=66 Identities=8% Similarity=0.143 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccC
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 495 (547)
+..++......++.++..++++.+.+..|........++.-+.+.|.-+++.++.++|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344555555677777777888777776666666777888888888888889999999999998643
No 422
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.75 E-value=39 Score=29.38 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=33.7
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 406 GRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+.|+.+.|.+++.+. ...| ....|--+....-+.|+++.|.+.|++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4456666666666654 3333 34466666666666777777777777777666654
No 423
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.63 E-value=3.9e+02 Score=28.75 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhh
Q 044812 59 TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113 (547)
Q Consensus 59 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 113 (547)
+.+-..|...|+++.|++.-+.-++.-...+-.-...+.+.+++..|-++|-++.
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 4456677788888888887665422111122223345566778888888887773
No 424
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.58 E-value=39 Score=32.56 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=34.5
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhCCCC--------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 399 ACVVDMLGRAGQLDRALDFIKTMPVE--------P--SPSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
-.|++..+-.|++..|++.++.+.+. | ...++-.++-+|...+++.+|.+.|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777766211 1 23355556666666666666666666654
No 425
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.31 E-value=2.8e+02 Score=27.07 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
...+|+-|...|+..+..+.++++
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHc
Confidence 456889999999999999999887
No 426
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.11 E-value=2e+02 Score=25.31 Aligned_cols=106 Identities=19% Similarity=0.166 Sum_probs=57.2
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044812 327 WSSIVSGYG--LHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM 404 (547)
Q Consensus 327 ~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (547)
|..+++++. ..++++.|.+.+..- .+.|+.. .-++.++...|+.+.|..+++... ....+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 344455543 446666776666321 2222221 236666666788888888877653 111223333333333
Q ss_pred hHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 044812 405 LGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHG 441 (547)
Q Consensus 405 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 441 (547)
..++.+.+|..+-+.....-....+..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 556888888887777642222346666666665433
No 427
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.04 E-value=18 Score=28.32 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=27.5
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAY 65 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 65 (547)
.+.+-|.-.+|-++|+.|+++|-+||. |+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 456678889999999999999988874 56666543
No 428
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.85 E-value=2.4e+02 Score=26.05 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=48.9
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----------cCChHHH
Q 044812 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK----------CGKFSEC 175 (547)
Q Consensus 106 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----------~g~~~~A 175 (547)
.++++.|...++.|.-.+|..+.-.+...-.+..+..+|+.+.... .-|..|+.+|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4566667777788888887777777777777778888887776432 224455544442 3566666
Q ss_pred HHHhccCCCCCh
Q 044812 176 LNLFDEMPQRNV 187 (547)
Q Consensus 176 ~~~~~~~~~~~~ 187 (547)
.++++.-..-|+
T Consensus 338 mkLLQ~yp~tdi 349 (370)
T KOG4567|consen 338 MKLLQNYPTTDI 349 (370)
T ss_pred HHHHhcCCCCCH
Confidence 666655544443
No 429
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=46.42 E-value=81 Score=28.36 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 431 GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 431 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
..+-.++.+.++++.|....++.+..+|.++.-...-+-+|.+.|...-|++-++...+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 445567888999999999999999999999988899999999999999999998886654
No 430
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.41 E-value=2.8e+02 Score=26.75 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc
Q 044812 294 LCNALIDMYSKCGSLDCARRVFED 317 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~ 317 (547)
.+.-+.+.|..+|+++.|++.|.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhh
Confidence 344555556666666666666544
No 431
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.27 E-value=1.1e+02 Score=24.60 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044812 309 DCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373 (547)
Q Consensus 309 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 373 (547)
.++.+.+++.|.+.+ ..-..++..+...++.-.|.++++++.+.+...+..|...-+..+...|
T Consensus 6 ~~~~~~lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 6 EDAIERLKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344445555443222 2233455555555555667777777776665555555555555554444
No 432
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=46.00 E-value=3e+02 Score=26.95 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=28.7
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 418 IKTMPVEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 418 ~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
|....++|. ..++..-+..+.+.+++..|-.+-+++++++|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 334445553 3366677777889999999999999999998753
No 433
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.86 E-value=2.3e+02 Score=25.54 Aligned_cols=184 Identities=13% Similarity=0.088 Sum_probs=115.4
Q ss_pred HCCCHHHHHHHHHHchhcCCCCCC--hHHHHhHHHHhhccCCchhHHHHHHHHHH---cCC--CCchhHHHHHHHHHHhc
Q 044812 233 QNGDLDEALVLFLEMQLKDRIEPN--KVSLVSVLPTCSSLIGLSGGKQIHGFAIR---KEL--NHDVSLCNALIDMYSKC 305 (547)
Q Consensus 233 ~~~~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 305 (547)
+..++++|+.-|++...-.|-+.+ ......++....+.+++++....+.++.. +.+ ..+....|++++....+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 456899999999987333333332 34556678889999999999888887753 222 23455677888877777
Q ss_pred CCHHHHHHHHhc----CCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----C-------HHHHHHHH
Q 044812 306 GSLDCARRVFED----SSFNKDA----ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP----D-------IITIVGVL 366 (547)
Q Consensus 306 g~~~~A~~~~~~----~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~-------~~~~~~l~ 366 (547)
.+.+--.++++. +.-..|. .+-.-|...|...+.+.+...+++++..+-..- | ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 776666666542 1101121 122446677888888888888888887652111 1 24566667
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH----HhHhcCCHHHHHH
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD----MLGRAGQLDRALD 416 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~ 416 (547)
..|....+-..-..++++...-..-.|.+.....+-. ...+.|++++|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 7777777777777778776554344566555544432 2345677777643
No 434
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=45.82 E-value=3.3e+02 Score=27.47 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC
Q 044812 296 NALIDMYSKCGSLDCARRVFEDSSFN 321 (547)
Q Consensus 296 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 321 (547)
..++.-|.+.+++++|..++..|...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~ 437 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWN 437 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCcc
Confidence 45777899999999999999888733
No 435
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=45.47 E-value=2.6e+02 Score=26.20 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=57.6
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc---CCCHHHHHHHHHH
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS---SRRWDAVAELRTM 486 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 486 (547)
+.-+.+++++ ...| +...+..++..+.+..+.+...+-|++++..+|.++..|..++..... .-.+++...+|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4445556554 3345 455788888899999999999999999999999999999988887765 2346677777665
Q ss_pred HH
Q 044812 487 MK 488 (547)
Q Consensus 487 m~ 488 (547)
..
T Consensus 128 ~l 129 (321)
T PF08424_consen 128 CL 129 (321)
T ss_pred HH
Confidence 53
No 436
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.78 E-value=84 Score=23.16 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=25.1
Q ss_pred HHHHHHHHhhC-CCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 447 DLAYKSLIQLE-PENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 447 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
++-++++...+ +-.|.....|+-.|++.|+-+.|.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 34444444433 44556677777777777777777776665
No 437
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.42 E-value=3.4e+02 Score=27.16 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHc
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK 286 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 286 (547)
...-+++..+..+..+.-+..+-.+| .. +..+...|..++.+|... ..+.-..+++++++.
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~-l~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRV-LE--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHH-HH--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 33444555555555555555555555 33 223344444555555444 344444444444444
No 438
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=44.28 E-value=1.4e+02 Score=22.68 Aligned_cols=42 Identities=10% Similarity=0.201 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
.+.+.+.+...+.|.....+..|+.-+....-++++..--++
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 346667777777777766666666665555556665554443
No 439
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=43.92 E-value=96 Score=25.79 Aligned_cols=33 Identities=12% Similarity=-0.074 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 339 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
+.-.|.++++.+.+.+..++..|...-+..+..
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e 72 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLE 72 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHH
Confidence 333444444444444444444433333333333
No 440
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.68 E-value=3.4e+02 Score=26.63 Aligned_cols=165 Identities=12% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh---CC-CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHH
Q 044812 138 NVGMLIHGLSIKI---GF-VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVF 213 (547)
Q Consensus 138 ~~a~~~~~~~~~~---g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~ 213 (547)
+....++...... |+ ..+......++... .|+...+..+++.....+...-...+..........-
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~-------- 223 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARY-------- 223 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhcc--------
Q ss_pred hhcCCCChhhHHHHHHHHHHC---CCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCC-----chhHHHHHHHHHH
Q 044812 214 DQMKRRNVYAWTAMINGYVQN---GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG-----LSGGKQIHGFAIR 285 (547)
Q Consensus 214 ~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~ 285 (547)
..+...+..++.++.+. ++.+.|+.++..| ...|..|....-..++.++...|. ...|...++....
T Consensus 224 ----d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~-l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~ 298 (413)
T PRK13342 224 ----DKDGDEHYDLISALHKSIRGSDPDAALYYLARM-LEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVER 298 (413)
T ss_pred ----CCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHH
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044812 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFED 317 (547)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (547)
.|.+.........+-.++.+-+-..+...++.
T Consensus 299 ~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~ 330 (413)
T PRK13342 299 IGMPEGRIALAQAVIYLALAPKSNAAYTAINA 330 (413)
T ss_pred hCCcHHHHHHHHHHHHHHcCCCccHHHHHHHH
No 441
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.61 E-value=35 Score=26.79 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=23.5
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHH
Q 044812 97 VKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131 (547)
Q Consensus 97 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 131 (547)
-+.|.-..|..+|..|+++|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677788899999988887764 56665543
No 442
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=42.51 E-value=1.3e+02 Score=21.63 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=41.8
Q ss_pred HhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCC
Q 044812 31 ATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ 82 (547)
Q Consensus 31 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 82 (547)
+++....+=.++|+.....|+..|+.+|..+++.+.-.--++...++++.|.
T Consensus 19 rk~~Ls~eE~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 19 RKKVLSAEEVELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHhccCHHHHHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344444556999999999999999999999998887777777788777764
No 443
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.34 E-value=73 Score=21.10 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 044812 358 DIITIVGVLSACGRSGLINEGLEIYNSVINT 388 (547)
Q Consensus 358 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 388 (547)
|..-.-.+|.++...|++++|.++++.+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444556677788888888888877777543
No 444
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.32 E-value=1.2e+02 Score=29.45 Aligned_cols=97 Identities=10% Similarity=0.089 Sum_probs=65.9
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----------------HHHHHHHHHhccCcHHHHHHHHHH
Q 044812 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII----------------TIVGVLSACGRSGLINEGLEIYNS 384 (547)
Q Consensus 321 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------------~~~~l~~~~~~~g~~~~a~~~~~~ 384 (547)
..+.......+.++....++.+.++..+. |..|+.. +...|++.++-.|++..|+++++.
T Consensus 72 ~W~~~~VLnvL~sLv~kS~I~e~l~~~~~----~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~ 147 (404)
T PF10255_consen 72 VWNVYSVLNVLYSLVDKSQINEQLEAEKR----GEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLEN 147 (404)
T ss_pred cccHHHHHHHHHHHHHHHhHHHHHHHhhc----cCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhc
Confidence 45566666666777777666665555443 3455542 245677888999999999999886
Q ss_pred HHHhc-----CCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 385 VINTY-----RIKP-TTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 385 ~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
+.-.. .+++ .+.++-.+.-+|.-.+++.+|.+.|...
T Consensus 148 idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 148 IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 62211 1111 3456667788899999999999999875
No 445
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.22 E-value=83 Score=19.49 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=20.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044812 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 367 (547)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555666666666666666666666555543
No 446
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.63 E-value=2.7e+02 Score=25.18 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 370 (547)
++.....+...|.+.|++.+|...|---+ .++...+..++......|...++ +...-..++. |.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HH
Confidence 66788889999999999999988886554 44444443334333333333322 2222233333 44
Q ss_pred ccCcHHHHHHHHHHHHHh
Q 044812 371 RSGLINEGLEIYNSVINT 388 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~ 388 (547)
-.++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 457788888777766554
No 447
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.34 E-value=99 Score=23.37 Aligned_cols=44 Identities=7% Similarity=-0.031 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYAL 67 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 67 (547)
.-+.+..+.+|....+|.++.+.|.++| ..+...-+.|-..+.+
T Consensus 64 ~PtViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 64 NPTVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVK 107 (128)
T ss_pred CChHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3556788899999999999999999998 5566655555554444
No 448
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.21 E-value=1.4e+02 Score=21.68 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHcCCCHH
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 478 (547)
|...-..+...+...|+++.|++.+-.+++.++. +...-..|+.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4456666777777888888888887777776543 3556667777777666643
No 449
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.77 E-value=3e+02 Score=25.46 Aligned_cols=73 Identities=7% Similarity=0.172 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh----------cCCHHH
Q 044812 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR----------AGQLDR 413 (547)
Q Consensus 344 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~ 413 (547)
.++|+.|.+.++.|....|..+.-.+.+.=.+.+.+.+|+.+..+ ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467888888888888888887777777777788888888887654 2224444444432 477777
Q ss_pred HHHHHHhCC
Q 044812 414 ALDFIKTMP 422 (547)
Q Consensus 414 A~~~~~~~~ 422 (547)
.+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777777764
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.74 E-value=2.2e+02 Score=24.07 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=16.3
Q ss_pred HHHHhccCcHHHHHHHHHHHHH
Q 044812 366 LSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3457788888888888887764
No 451
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=40.11 E-value=5.6e+02 Score=28.41 Aligned_cols=92 Identities=9% Similarity=-0.052 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHH-HHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARR-VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 369 (547)
+..+-...+.++...|..+.+.. +...+. .++...-...+.++...+. +++...+..+.+ .|+...-...+.++
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~-d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL 862 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALR-ASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLAL 862 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhc-CCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 44555555666666655443322 222333 4454444445555555544 334444444443 34444444455555
Q ss_pred hccCcHHHHHHHHHHHHH
Q 044812 370 GRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~ 387 (547)
.+.+.-..+...+..+.+
T Consensus 863 ~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 863 TRWPGDPAARDALTTALT 880 (897)
T ss_pred hccCCCHHHHHHHHHHHh
Confidence 554323345555554443
No 452
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=40.05 E-value=1.8e+02 Score=22.71 Aligned_cols=58 Identities=12% Similarity=-0.031 Sum_probs=34.4
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIW-GALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
..+..++..++.-.|..++|.++++..+-.++.... ..++..|....+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445556666666777777777777776433443333 3366666666666665555443
No 453
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.38 E-value=3.2e+02 Score=25.47 Aligned_cols=113 Identities=15% Similarity=0.039 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-------CCCCCHHHHHH-HHHHHHHcCCHHHH
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-------PVEPSPSIWGA-LVSASVMHGNSEMQ 446 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~-l~~~~~~~~~~~~a 446 (547)
+++-.+..+...+..|-.--...+.....-|++.|+.+.|++.+.+. +.+-|...+.. ++-.|..+.-+.+-
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 33444444444443333334455666677788888888888877654 34445443322 22222222223333
Q ss_pred HHHHHHHHhhCCC--CCchHHHH-HHHHHcCCCHHHHHHHHHHH
Q 044812 447 DLAYKSLIQLEPE--NPSNYVSL-SNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 447 ~~~~~~~~~~~~~--~~~~~~~l-~~~~~~~g~~~~A~~~~~~m 487 (547)
++..+.+.+.+.+ ...-+... +-.+....++.+|..+|-+.
T Consensus 164 iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 164 IEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333433321 00111122 12233446777777776554
No 454
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.11 E-value=4.4e+02 Score=26.88 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCc------------hhHHHHHHHHhHhcCCHHHHHHHHHhCC--------------
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPT------------TEICACVVDMLGRAGQLDRALDFIKTMP-------------- 422 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------- 422 (547)
+.....++++.+.|.-... ...|+ +.+.-.+...+...|+.+.|.+++++.-
T Consensus 248 ~~hs~sYeqaq~~F~~av~--~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVI--VHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPF 325 (665)
T ss_pred eecchHHHHHHHHHHHHHh--hcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccc
Q ss_pred --------CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhCCC-CCchHHHHHHHHH-cCCCHHHHHHHHHHH-
Q 044812 423 --------VEPSPSIWGALVSASV----MHGNSEMQDLAYKSLIQLEPE-NPSNYVSLSNLYA-SSRRWDAVAELRTMM- 487 (547)
Q Consensus 423 --------~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m- 487 (547)
..|.-..+-..+.-|. +.|-+..|.+.-+-+.+++|. ||.....+++.|. +..+|+=.+++++..
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HhCCCccCCccce
Q 044812 488 KDRGLKKSPGCSW 500 (547)
Q Consensus 488 ~~~~~~~~~~~~~ 500 (547)
..+.+...|-+.+
T Consensus 406 ~~n~l~~~PN~~y 418 (665)
T KOG2422|consen 406 NMNKLSQLPNFGY 418 (665)
T ss_pred hhccHhhcCCchH
No 455
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=39.03 E-value=82 Score=22.49 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=13.8
Q ss_pred CChHHHHHHhccCCCCChhhHHHHHHHHHcC
Q 044812 170 GKFSECLNLFDEMPQRNVGSWNVRISGHASS 200 (547)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 200 (547)
.+.+.+.++++.+..++...|..+..++...
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~ 74 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRET 74 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3344444444444444444444444444333
No 456
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.92 E-value=1.1e+02 Score=24.56 Aligned_cols=49 Identities=6% Similarity=-0.074 Sum_probs=34.1
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCc
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 71 (547)
-..++.++...+....|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 4556666666666688888888888877776666666667777777643
No 457
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.52 E-value=1.1e+02 Score=27.29 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=12.6
Q ss_pred HHHHHhHhcCCHHHHHHHHHhC
Q 044812 400 CVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
.+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3455555666666666666554
No 458
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.28 E-value=90 Score=23.99 Aligned_cols=51 Identities=6% Similarity=-0.033 Sum_probs=40.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchh
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 73 (547)
-..++.++......-.|.++++.+.+.|...+..|.-.-++.+.+.|-...
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 456777788887799999999999999988888877777888888886554
No 459
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.18 E-value=1.2e+02 Score=23.05 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=39.1
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchh
Q 044812 25 HFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73 (547)
Q Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 73 (547)
.++.++......-.|.++++.+.+.+...+..|.-..++.+...|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4566666777888999999999999887888887777888888886554
No 460
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.01 E-value=3.4e+02 Score=25.30 Aligned_cols=98 Identities=12% Similarity=0.201 Sum_probs=51.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC---CCCCC--HHHHHH-HHHHH
Q 044812 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM---PVEPS--PSIWGA-LVSAS 437 (547)
Q Consensus 364 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~-l~~~~ 437 (547)
.|..+-.+.|+..+|.+.|+.+.++..+..-..+...|+.++....-+.+...++.+. . .|. ...|.. |+++-
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis-lPkSA~icYTaALLK~R 358 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS-LPKSAAICYTAALLKTR 358 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-CcchHHHHHHHHHHHHH
Confidence 3444445677888888888877665322222334456677766666555555555443 2 222 223432 22221
Q ss_pred -----------HHcCC---HHHHHHHHHHHHhhCCCCCc
Q 044812 438 -----------VMHGN---SEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 438 -----------~~~~~---~~~a~~~~~~~~~~~~~~~~ 462 (547)
.+.|- -..|.+...++.+.+|.-|.
T Consensus 359 AVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 359 AVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcH
Confidence 12221 23466677777777776554
No 461
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.99 E-value=3.8e+02 Score=25.90 Aligned_cols=91 Identities=9% Similarity=0.127 Sum_probs=49.1
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHH---HHH----HHHHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKPT----TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPS---IWG----ALVSA 436 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~---~~~----~l~~~ 436 (547)
++...|+...-..++......-.+..| ....|.|++.|...+.++.|.++..+... |+.. -|. -++..
T Consensus 178 ~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~-pe~~snne~ARY~yY~GrI 256 (493)
T KOG2581|consen 178 SYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY-PEAASNNEWARYLYYLGRI 256 (493)
T ss_pred HHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC-ccccccHHHHHHHHHHhhH
Confidence 344555555555555444332222222 34456667777777788888888777631 2111 111 12233
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.+-.+++..|.+.|-++..+.|.
T Consensus 257 kaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 257 KAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhCcc
Confidence 34556777777777777666664
No 462
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.97 E-value=5.2e+02 Score=27.97 Aligned_cols=131 Identities=11% Similarity=0.092 Sum_probs=87.4
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044812 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGL 379 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 379 (547)
.....+|+++.|++.-..++ +..+|..|...-.+.|+.+-|...|++.+. |..|--.|.-.|+.++-.
T Consensus 651 ~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 34556788888888887776 556799999998999999988888887644 333334456678887766
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
++......+ -|.... .....-.|++++=.++++..+..|-.. . ....+|.-+.|.++.++...
T Consensus 719 Km~~iae~r----~D~~~~---~qnalYl~dv~ervkIl~n~g~~~lay--l----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIR----NDATGQ---FQNALYLGDVKERVKILENGGQLPLAY--L----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhh----hhhHHH---HHHHHHhccHHHHHHHHHhcCcccHHH--H----HHhhcCcHHHHHHHHHhhcc
Confidence 665544332 222221 111223588999999998887444322 1 12457888889998888766
No 463
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.80 E-value=3.2e+02 Score=24.94 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=32.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHhccCcHHHHHHH
Q 044812 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIIT-------IVGVLSACGRSGLINEGLEI 381 (547)
Q Consensus 331 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~l~~~~~~~g~~~~a~~~ 381 (547)
..-..+.+++++|...+.+....|+..+..+ ...+...|...|+...-.+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3445567788888888888888877666433 44555666666665544333
No 464
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.35 E-value=2.9e+02 Score=24.41 Aligned_cols=147 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044812 88 LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167 (547)
Q Consensus 88 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 167 (547)
+...-+..|.+.-++.-|-...++.. .+.--.+.+--|.+..+..--.++.+-....+++-+......++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIi------EPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKII------EPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhh------hhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Q ss_pred hcCChHHHHHHhccCCC-CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHH
Q 044812 168 KCGKFSECLNLFDEMPQ-RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLE 246 (547)
Q Consensus 168 ~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 246 (547)
..||...|+.-++.-.. .+.+. +..+|+-..+|.+.....++..+.+ +++++|.+.+.+
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn-------------------~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~ 263 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVN-------------------QENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAE 263 (333)
T ss_pred ccchHHHHHHHHHHHhccccccc-------------------hhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHH
Q ss_pred chhcCCCCCChHHHHhH
Q 044812 247 MQLKDRIEPNKVSLVSV 263 (547)
Q Consensus 247 m~~~~~~~p~~~~~~~l 263 (547)
+ .+.|..|....-+..
T Consensus 264 l-w~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 264 L-WKLGYSPEDIITTLF 279 (333)
T ss_pred H-HHcCCCHHHHHHHHH
No 465
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=36.90 E-value=2.7e+02 Score=23.88 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDII 360 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 360 (547)
...+.++..+...|+++.|.++|.-+.... ..|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 346778888889999999999999988753 34544
No 466
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.43 E-value=1.8e+02 Score=29.89 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCchhHHHHhccCCC------CCcchHHHHHHHHHhcCChh------HHHHHHHHhhhCCCCCCcchHHHH
Q 044812 60 KLITAYALCGQPTQSQLVFNSIQH------KDVYLYNSLINGYVKNHGHN------EALELFSNMYYSNVSPDDFTLATI 127 (547)
Q Consensus 60 ~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~------~A~~~~~~m~~~~~~p~~~~~~~l 127 (547)
+|+.+|...|++..+.++++.... .-...||..|+.+.+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 677777777777777777766532 12345777777777777653 3334444333 34466777776
Q ss_pred HHHHcc
Q 044812 128 SKLSGE 133 (547)
Q Consensus 128 ~~~~~~ 133 (547)
+++...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 467
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.39 E-value=64 Score=25.18 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=19.8
Q ss_pred hhHHHHhccCCCCCc-----chHHHHHHHHHhcCChhHHHHHHH
Q 044812 72 TQSQLVFNSIQHKDV-----YLYNSLINGYVKNHGHNEALELFS 110 (547)
Q Consensus 72 ~~A~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~A~~~~~ 110 (547)
+++.++|..|....+ .-|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334555555544322 233334444555666666666654
No 468
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=36.38 E-value=87 Score=18.01 Aligned_cols=17 Identities=12% Similarity=-0.083 Sum_probs=7.7
Q ss_pred HHHHHHHcCCHHHHHHH
Q 044812 433 LVSASVMHGNSEMQDLA 449 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~ 449 (547)
+...+...|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33344445555555555
No 469
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.85 E-value=4e+02 Score=25.53 Aligned_cols=126 Identities=8% Similarity=-0.030 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCC----------------C--
Q 044812 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ----------------H-- 83 (547)
Q Consensus 22 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------~-- 83 (547)
.|...-..+..+-..-+-..+..-+.+. +-.+.++..+-..+...|+.+.|-++.++.. .
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~--PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~ 86 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKN--PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLT 86 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 3444434333333222334444433222 4456666666777777777777766665531 0
Q ss_pred -----------CCcchHHH---HHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHH-ccCCCcHHHHHHHHHHH
Q 044812 84 -----------KDVYLYNS---LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS-GEIKDLNVGMLIHGLSI 148 (547)
Q Consensus 84 -----------~~~~~~~~---ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~ 148 (547)
-|..-|-+ .|..+.+.|.+..|+++.+-+...+..-|+......|..| .+.++++--.++.+...
T Consensus 87 ~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 87 SGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 12222333 3456677788888888888877765544566666666655 35566666666666544
Q ss_pred H
Q 044812 149 K 149 (547)
Q Consensus 149 ~ 149 (547)
.
T Consensus 167 ~ 167 (360)
T PF04910_consen 167 A 167 (360)
T ss_pred h
Confidence 3
No 470
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=35.44 E-value=2.7e+02 Score=23.34 Aligned_cols=110 Identities=11% Similarity=0.084 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044812 308 LDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 308 ~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
++.++..+.+.+..-|..--.+.+..-.+.| ..-..+..++.+.|+ +..+....+...........|..++..-.+
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 5566666666664444433333444444444 234456677777774 344555555555555556666666655444
Q ss_pred hcCCCCchhHHHHHHHHhHhcC-CHHHHHHHHHhC
Q 044812 388 TYRIKPTTEICACVVDMLGRAG-QLDRALDFIKTM 421 (547)
Q Consensus 388 ~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 421 (547)
..+..++......+...+.+.| .++.+..++..+
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4334455555555555555555 455555555554
No 471
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.36 E-value=1.5e+02 Score=26.53 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=25.3
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcC---C-CCchhHHHHHHHHhHhcCCHHHHHHH
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYR---I-KPTTEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~---~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
+...|...|++++|.++|+.+...+. + .+...+...+..++.+.|+.+..+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34445566666666666665543221 1 12233344444455555555544433
No 472
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.32 E-value=3.1e+02 Score=24.06 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=10.3
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 044812 331 VSGYGLHGKGHEAVLLYNKM 350 (547)
Q Consensus 331 i~~~~~~~~~~~a~~~~~~m 350 (547)
|......|+.+.|.+....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 34445555555555555544
No 473
>PF15469 Sec5: Exocyst complex component Sec5
Probab=34.36 E-value=1.6e+02 Score=24.80 Aligned_cols=27 Identities=11% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHhCCCccCCccceE
Q 044812 475 RRWDAVAELRTMMKDRGLKKSPGCSWI 501 (547)
Q Consensus 475 g~~~~A~~~~~~m~~~~~~~~~~~~~~ 501 (547)
...++..+++..+.+.+...+|.+.|+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 567778888888888898888887776
No 474
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.30 E-value=2.3e+02 Score=28.52 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
...++.-|.+.+++++|+.++..|
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Confidence 456788899999999999999998
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.51 E-value=3e+02 Score=23.30 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhcCCCCc-hhHHH-----HHHHHhHhcCCHHHHHHHHHhCCCCCCHH
Q 044812 375 INEGLEIYNSVINTYRIKPT-TEICA-----CVVDMLGRAGQLDRALDFIKTMPVEPSPS 428 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 428 (547)
++.|+.+|+.+.+....+-+ ..... ..+-.|.+.|.+++|.+++++.-..|+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~ 144 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQ 144 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCch
Confidence 45666777766554221100 11111 12334556666666666666552244433
No 476
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=33.42 E-value=1.2e+02 Score=21.72 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHH
Q 044812 39 TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA 105 (547)
Q Consensus 39 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 105 (547)
...+++.+.+.|+- +...... .-+...+.++|.++++.++.....+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl-t~~~~e~---I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPDMIEE---IQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC-CHHHHHH---HHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 35577777777743 2222222 233456778888888888888888888888888777655443
No 477
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=32.90 E-value=7.3e+02 Score=27.63 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=28.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
+-|-....|+++=+-+++++.++.|.. . -...=...|+|++|++-+.++
T Consensus 879 ~VAq~SQkDPKEYLPfL~~L~~l~~~~-r----ry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 879 MVAQQSQKDPKEYLPFLQELQKLPPLY-R----RYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHhccChHHHHHHHHHHHhCChhh-e----eeeHhhhhCCHHHHHHHHHhh
Confidence 334445667777777777776665421 1 112234567888888776543
No 478
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=32.74 E-value=1.5e+02 Score=20.95 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=6.3
Q ss_pred HhcCCchhHHHHhc
Q 044812 66 ALCGQPTQSQLVFN 79 (547)
Q Consensus 66 ~~~~~~~~A~~~~~ 79 (547)
++.|+++-...+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 33444444444444
No 479
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.60 E-value=7e+02 Score=27.31 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCC
Q 044812 159 ANSLMSMYVKCGKFSECLNLFDEMPQ 184 (547)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 184 (547)
|..|+..|...|+.++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 77899999999999999999998876
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.24 E-value=1.5e+02 Score=24.59 Aligned_cols=39 Identities=5% Similarity=-0.127 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 134 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
.++.-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344445555666665555444544444445555555543
No 481
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.20 E-value=4.8e+02 Score=25.27 Aligned_cols=57 Identities=7% Similarity=0.072 Sum_probs=37.1
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChH--HHHhHHHHhhcc--CCchhHHHHHHHHHHc
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKV--SLVSVLPTCSSL--IGLSGGKQIHGFAIRK 286 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~--~~~~~a~~~~~~~~~~ 286 (547)
+..+.+.+++..|.++|..+ ... ++++.. .+..+..+|... -++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l-~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEEL-LRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHH-HHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44566889999999999998 554 555544 344455555443 3456777777766554
No 482
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=31.99 E-value=3.9e+02 Score=24.17 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=55.2
Q ss_pred HHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-------chHHHHHHHHH
Q 044812 400 CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP-------SNYVSLSNLYA 472 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 472 (547)
.++-.|.|.=+...--.+|+..+ .| ..|+.-|.+.|+.+.|-.++--+...++.+. ..-..|+....
T Consensus 158 ~Ivv~C~RKtE~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~ 231 (258)
T PF07064_consen 158 EIVVNCARKTEVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMAL 231 (258)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence 33444444444555555666554 33 2567778888888888877766655543322 23345667778
Q ss_pred cCCCHHHHHHHHHHHHhCC
Q 044812 473 SSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~ 491 (547)
..|+|+-+.++.+-++.-+
T Consensus 232 ~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 232 ESGDWDLCFELVRFLKALD 250 (258)
T ss_pred hcccHHHHHHHHHHHHHhC
Confidence 8899999999998886543
No 483
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.97 E-value=2.3e+02 Score=21.48 Aligned_cols=80 Identities=10% Similarity=-0.010 Sum_probs=44.0
Q ss_pred cCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhh
Q 044812 34 RSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113 (547)
Q Consensus 34 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 113 (547)
....+|..+.+.+...+. -...+--.-+..+.++|++++|+..=.....||...|-+|-. .+.|--+++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 355677777777766653 222232333445667788888755545555577766665533 46677777777776665
Q ss_pred hCC
Q 044812 114 YSN 116 (547)
Q Consensus 114 ~~~ 116 (547)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 544
No 484
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.83 E-value=2.8e+02 Score=28.68 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCcHH------HHHHHHHHHHHhcCCCCchhHHHH
Q 044812 329 SIVSGYGLHGKGHEAVLLYNKMVCL--GSKPDIITIVGVLSACGRSGLIN------EGLEIYNSVINTYRIKPTTEICAC 400 (547)
Q Consensus 329 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 400 (547)
+|+.+|..+|++..+.++++..... |-+.-...|+..|+...+.|.++ .|.+.+++. .+.-|..+|..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 6788888888888888888887654 22333556777777777777653 233333333 23446666666
Q ss_pred HHHHh
Q 044812 401 VVDML 405 (547)
Q Consensus 401 l~~~~ 405 (547)
++.+-
T Consensus 109 l~~~s 113 (1117)
T COG5108 109 LCQAS 113 (1117)
T ss_pred HHHhh
Confidence 65543
No 485
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.72 E-value=4.2e+02 Score=26.57 Aligned_cols=98 Identities=8% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
++..+.++...+..|+..+......++. ...|+...|+.+++.. .......++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~l----------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMI----------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHh-----------------
Q ss_pred hhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCcc
Q 044812 455 QLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494 (547)
Q Consensus 455 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 494 (547)
+-.+...+..++......+....|..++.+|.+.|..|
T Consensus 244 --g~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 244 --GYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred --CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
No 486
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.66 E-value=4.9e+02 Score=25.31 Aligned_cols=136 Identities=18% Similarity=0.097 Sum_probs=66.0
Q ss_pred HHHHHHHHhCCCCChhH--HHHHHHHHHhcCCchhHHHHhccCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 044812 41 QSHSQILSLGHISNPFV--STKLITAYALCGQPTQSQLVFNSIQHKDV---YLYNSLINGYVKNHGHNEALELFSNMYYS 115 (547)
Q Consensus 41 ~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 115 (547)
++.+.+.+.|..|+... -.+.+...+..|+.+-+.-+++.-..++. ... ..+...++.|+.+.+..+++.-...
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE-SELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcc-cHHHHHHHCCCHHHHHHHHHcCCcc
Confidence 34455556777766432 23445555667787776666655433322 122 2344555777776655555432111
Q ss_pred CCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHhccC
Q 044812 116 NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVIL--ANSLMSMYVKCGKFSECLNLFDEM 182 (547)
Q Consensus 116 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 182 (547)
.-..+.... +.+...+..|+.+ +.+.+.+.|..|+... -.+.+...+..|+.+-+..+++.-
T Consensus 95 ~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 95 DDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred cccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 000111111 2233334455543 4445556665554321 122344555677777666666543
No 487
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=31.23 E-value=1.7e+02 Score=21.06 Aligned_cols=45 Identities=2% Similarity=0.196 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCchhHHHHhccCCC-CCcchHHHHHHHHHhcCChh
Q 044812 59 TKLITAYALCGQPTQSQLVFNSIQH-KDVYLYNSLINGYVKNHGHN 103 (547)
Q Consensus 59 ~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~ 103 (547)
..+.......|+.+.|..+++.+.+ .....+..++.++-+.|...
T Consensus 38 e~I~a~~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~~~ 83 (88)
T cd08812 38 EQILAEERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRRTGNDD 83 (88)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCCcc
Confidence 3333333334666666666666665 44445566666666655433
No 488
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=31.15 E-value=1.9e+02 Score=21.17 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=26.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCcCCC
Q 044812 514 DKAHPCSVSIYEMLDDLILIMRGAAASPHL 543 (547)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 543 (547)
.+.||...........+..-..+.|..|+.
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~s 86 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPAS 86 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 457899998899999999999999999975
No 489
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.89 E-value=98 Score=23.53 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=20.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHcc
Q 044812 92 LINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133 (547)
Q Consensus 92 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 133 (547)
++..+...+..-.|.++++.+.+.+..++..|....++.+..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~ 47 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEE 47 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 344444445555566666666555544444443333333333
No 490
>PRK12356 glutaminase; Reviewed
Probab=30.73 E-value=4.5e+02 Score=24.57 Aligned_cols=208 Identities=11% Similarity=0.038 Sum_probs=104.6
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC
Q 044812 312 RRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391 (547)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 391 (547)
..++++.+.+|+-..||++++.-...|++..- |+ .....+...++.......+++...++++++..+ .+
T Consensus 86 ~~V~~~VG~EPSG~~FNsi~~Le~~~g~P~NP------mI----NAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~-~l 154 (319)
T PRK12356 86 QAVREKIGADPTGLPFNSVIAIELHGGKPLNP------LV----NAGAIATTSLVPGANSDERWQRILDGQQRFAGR-EL 154 (319)
T ss_pred HHHHHHhCCCCCCCCcchHHHhhccCCCCCCc------cc----cHHHHHHHHhccCCChHHHHHHHHHHHHHHhCC-CC
Confidence 45677788788888888886554433432100 00 001222233332211112234444455555432 34
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHHhC-C-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC------C
Q 044812 392 KPTTEICACVVDMLGRAGQLDRALDFIKTM-P-VEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQL--EPE------N 460 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~------~ 460 (547)
..|..+|.+ -...|+...|+..+-+- + +..|+ .+.....+.|+-....+..-.+.--+... +|. +
T Consensus 155 ~~de~v~~S----E~~t~~RNrAlA~~lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~tg~~vl~ 230 (319)
T PRK12356 155 ALSDEVYQS----EQTTNFHNRAIAWLLYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPLTGKRVVD 230 (319)
T ss_pred ccCHHHHHH----HHhhhHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCCCCeecC
Confidence 444444432 34455566666555332 2 22332 24444445554444443333322222221 231 3
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeC-----CEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIH-----GKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (547)
+..-..........|.||.+-+..-+. |++-..+++-..+. ..+-.|....-.++..-.-...++.+.+++.
T Consensus 231 ~~~~r~v~s~M~TCGmYd~SG~fa~~V---GlPaKSGVgGgIlavvPg~~gIav~SP~LD~~GNSv~G~~~le~ls~~~~ 307 (319)
T PRK12356 231 ADNVPYILAEMTMEGLYERSGDWAYTV---GLPGKSGVGGGILAVVPGKMGIAAFSPPLDSAGNSVRGQKAVAYVADKLG 307 (319)
T ss_pred HHHHHHHHHHHHHcCCccchhhHHHHh---CCccccCccceeEEEeCCceEEEEECCCcCCCCCcHHHHHHHHHHHHHhC
Confidence 334455556667788888888876653 66655555333221 3334566666678888888888888877764
Q ss_pred Hc
Q 044812 536 GA 537 (547)
Q Consensus 536 ~~ 537 (547)
-.
T Consensus 308 l~ 309 (319)
T PRK12356 308 LN 309 (319)
T ss_pred CC
Confidence 43
No 491
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.65 E-value=2.6e+02 Score=22.56 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=33.6
Q ss_pred hhhCCCCCCcchHHHHHHHHccC-CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 112 MYYSNVSPDDFTLATISKLSGEI-KDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 112 m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 444555544332 2333444333 44567777777777776655666555556666666654
No 492
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.57 E-value=7.8e+02 Score=27.29 Aligned_cols=252 Identities=8% Similarity=-0.058 Sum_probs=115.9
Q ss_pred HhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCch
Q 044812 213 FDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV 292 (547)
Q Consensus 213 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 292 (547)
...+..++...-...+..+.+.+..+ +...+... .. .++...-...+.++...+........+..+.+. ++.
T Consensus 627 ~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~a-L~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~ 698 (897)
T PRK13800 627 APYLADPDPGVRRTAVAVLTETTPPG-FGPALVAA-LG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDP 698 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHH-Hc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCH
Confidence 33344555555555555555555433 33333333 11 223333233333333332211111222222222 344
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 044812 293 SLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372 (547)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 372 (547)
.+-...+..+...+.-+ ...+...+. .+|...-...+.++.+.+..+. +..... .++...-.....++...
T Consensus 699 ~VR~~A~~aL~~~~~~~-~~~l~~~L~-D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 699 VVRAAALDVLRALRAGD-AALFAAALG-DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHhhccCC-HHHHHHHhc-CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHh
Confidence 44444555554432111 122333344 5666555555666655544322 112221 34444445555555555
Q ss_pred CcHHH-HHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044812 373 GLINE-GLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYK 451 (547)
Q Consensus 373 g~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 451 (547)
+..+. +...+..+.. .++...-...+.++...|..+.+...+..+-..++..+-...+.++...+.. ++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHH
Confidence 54332 2344444433 3456666677777777777655544444332345555555566666666653 3444444
Q ss_pred HHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 452 SLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 452 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
.+++ +| +...-...+.++.+.+.-..+...+....
T Consensus 845 ~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4432 22 45566666667766533345555555544
No 493
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.36 E-value=6.9e+02 Score=26.55 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCCchhHHHHhccCCC-CCc----------chHHHHHHHHHhcCChhHH
Q 044812 40 KQSHSQILSLGHISN---PFVSTKLITAYALCGQPTQSQLVFNSIQH-KDV----------YLYNSLINGYVKNHGHNEA 105 (547)
Q Consensus 40 ~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----------~~~~~ll~~~~~~~~~~~A 105 (547)
...+..|+++--.|+ +.+...++-.|....+++...++.+.++. ||. ..|.-.+.---+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 455666766654554 44555566667677778888877777654 321 1232222222234667777
Q ss_pred HHHHHHhhhC--CCCCCcch-----HHHH--HHHHccCCCcHHHHHHHHHHHH
Q 044812 106 LELFSNMYYS--NVSPDDFT-----LATI--SKLSGEIKDLNVGMLIHGLSIK 149 (547)
Q Consensus 106 ~~~~~~m~~~--~~~p~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~~~~ 149 (547)
+.+.-.|.+. .+.||... |.-+ -..|...+..+.|.++|++.-+
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 7777666654 34555432 2211 1223334455566666665544
No 494
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.29 E-value=15 Score=33.94 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=49.1
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
...|.++.|++.+..+++++|+....|..-..++.+.+++..|++=+....+.+..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D 180 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD 180 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc
Confidence 45688999999999999999999999999999999999999999988876665543
No 495
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=30.13 E-value=4.8e+02 Score=24.66 Aligned_cols=133 Identities=9% Similarity=0.090 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 044812 297 ALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHE-AVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375 (547)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 375 (547)
-+.+.+++.++.+.+..+-+.+.--|.. ...++..++-...=.+. +..+.+.+... ||......++++.+.....
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~-vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPE-VLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChH-HHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 3556666666666555555554422332 23344444333332232 22333333332 7777777777777776665
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHH-HhHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 044812 376 NEGLEIYNSVINTYRIKPTTEICACVVD-MLGRAGQLDRALDFIKTMPVEPSPSIWGALV 434 (547)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 434 (547)
......+..+... ....+.++...+.. +.....+.+.+..+++++-..+|...|+.+.
T Consensus 247 ~~~~~~i~~~L~~-~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlf 305 (340)
T PF12069_consen 247 DLVAILIDALLQS-PRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLF 305 (340)
T ss_pred hHHHHHHHHHhcC-cccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHH
Confidence 5555545555443 22223333332222 1222234444444555543333333444443
No 496
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=29.87 E-value=1.2e+02 Score=21.98 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=13.1
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHC
Q 044812 209 SRRVFDQMKRRNVYAWTAMINGYVQN 234 (547)
Q Consensus 209 a~~~~~~~~~~~~~~~~~li~~~~~~ 234 (547)
+.++++.++.....+|..+..++-..
T Consensus 53 ~~~Lld~L~~RG~~AF~~F~~aL~~~ 78 (90)
T cd08332 53 NVALLNLLPKRGPRAFSAFCEALRET 78 (90)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHhc
Confidence 44444444455555555555555443
No 497
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=29.62 E-value=3.9e+02 Score=23.47 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=27.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH----HhHhcCCHHHHHHHHHh
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD----MLGRAGQLDRALDFIKT 420 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~ 420 (547)
-|......|++++|.+..+.+... -+..|...+-.|.. -+.+.|..++|+++.+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344455666666666666655433 22333322221111 13456666666666654
No 498
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.40 E-value=5.3e+02 Score=24.99 Aligned_cols=63 Identities=13% Similarity=-0.001 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCC--CChHHHHhHHHHhhccCCchhHHHHHHHHHH
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE--PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 285 (547)
..+.-+...|...|+++.|++.|.+. ...-.. -....+..+|....-.|++..+..+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~-RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRA-RDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhh-hhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 35677788888899999999988876 332111 1123345555555666676666666655544
No 499
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=29.38 E-value=2.7e+02 Score=21.59 Aligned_cols=61 Identities=11% Similarity=0.014 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hhCCCCCchHH----HHHHHHHcCCCHHHHHHHHHHH
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLI-------QLEPENPSNYV----SLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m 487 (547)
...+..|..++...|++++++..-+..+ +++.+....|. .-+.++...|+.++|...|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4445556666666666666555444443 33444444443 3345667778888888877643
No 500
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=29.29 E-value=1.1e+02 Score=29.99 Aligned_cols=103 Identities=15% Similarity=0.036 Sum_probs=70.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhc
Q 044812 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV-LSACGRSGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRA 408 (547)
Q Consensus 331 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 408 (547)
+..+...+.++.|..++.+.++ +.||...|-.. ..++.+.+++..|+.=+..+++. .|+ ...|-.=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 4456677899999999999999 47876655444 37788999999998887777754 343 23333333445555
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 044812 409 GQLDRALDFIKTM-PVEPSPSIWGALVSASV 438 (547)
Q Consensus 409 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 438 (547)
+.+.+|+..|+.. .+.|+..-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 6777777777766 56787776666655443
Done!