Query 044812
Match_columns 547
No_of_seqs 586 out of 3518
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 12:04:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.4E-38 8.2E-43 324.9 38.8 457 23-491 87-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-38 5.1E-43 326.4 35.0 413 65-491 63-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.2E-27 2.8E-31 225.5 40.8 374 64-476 8-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 1.8E-28 6.3E-33 240.8 22.6 186 221-408 26-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 1E-28 3.5E-33 242.6 18.7 188 87-305 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-25 6.1E-30 216.1 39.0 376 26-442 5-388 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.9E-23 6.5E-28 209.9 34.5 265 221-491 186-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.4E-23 8.1E-28 209.2 33.8 438 22-467 8-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 3.6E-22 1.2E-26 201.7 32.1 426 22-461 27-496 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.5E-21 5E-26 192.6 34.1 344 85-459 25-413 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 5.8E-22 2E-26 195.5 31.0 327 120-487 25-406 (450)
12 3fp2_A TPR repeat-containing p 99.9 5.1E-21 1.7E-25 193.3 34.8 422 54-492 24-493 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 4.7E-19 1.6E-23 168.9 32.0 207 265-473 128-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 5.9E-18 2E-22 161.2 35.3 301 155-491 2-336 (359)
15 2xm6_A Protein corresponding t 99.8 1.5E-17 5.1E-22 165.5 34.7 378 40-473 27-452 (490)
16 3hym_B Cell division cycle pro 99.8 2.9E-18 1E-22 161.3 27.2 187 291-478 124-322 (330)
17 1b89_A Protein (clathrin heavy 99.8 1.4E-18 4.7E-23 162.6 22.5 348 67-486 15-368 (449)
18 1b89_A Protein (clathrin heavy 99.8 2.6E-18 8.8E-23 160.8 22.6 352 26-422 9-370 (449)
19 3hym_B Cell division cycle pro 99.8 2.1E-17 7.3E-22 155.4 28.7 266 219-490 20-299 (330)
20 2xm6_A Protein corresponding t 99.8 4.2E-16 1.4E-20 155.0 38.7 354 84-492 37-434 (490)
21 2ooe_A Cleavage stimulation fa 99.8 5.5E-16 1.9E-20 155.8 38.8 417 43-490 2-492 (530)
22 1fch_A Peroxisomal targeting s 99.8 1.2E-17 4.3E-22 159.7 24.9 262 220-486 63-355 (368)
23 1xi4_A Clathrin heavy chain; a 99.8 6.6E-16 2.2E-20 161.1 37.3 381 52-483 982-1377(1630)
24 4eqf_A PEX5-related protein; a 99.8 5.3E-18 1.8E-22 162.2 19.6 262 220-486 64-352 (365)
25 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 4.2E-21 146.5 27.6 246 223-484 36-288 (291)
26 1xi4_A Clathrin heavy chain; a 99.8 7.1E-15 2.4E-19 153.4 42.6 420 17-485 982-1440(1630)
27 1fch_A Peroxisomal targeting s 99.8 3.3E-17 1.1E-21 156.7 23.4 297 100-454 39-357 (368)
28 4g1t_A Interferon-induced prot 99.8 7.8E-16 2.7E-20 152.6 32.1 368 119-501 49-470 (472)
29 2ooe_A Cleavage stimulation fa 99.8 4.8E-15 1.6E-19 149.0 37.5 418 11-459 3-495 (530)
30 3cv0_A Peroxisome targeting si 99.8 2.2E-16 7.4E-21 148.3 24.5 262 220-487 20-312 (327)
31 4eqf_A PEX5-related protein; a 99.7 5.7E-17 2E-21 154.9 19.9 293 69-421 45-353 (365)
32 3mkr_A Coatomer subunit epsilo 99.7 2.5E-16 8.5E-21 144.5 23.1 248 228-491 6-265 (291)
33 4g1t_A Interferon-induced prot 99.7 1.3E-14 4.4E-19 143.8 30.6 383 53-468 49-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 3.9E-15 1.3E-19 139.6 24.8 227 124-387 24-268 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.7 3.2E-17 1.1E-21 165.7 9.5 127 290-417 125-258 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6.1E-22 167.5 6.6 148 54-201 126-286 (1134)
37 2pl2_A Hypothetical conserved 99.7 9.7E-15 3.3E-19 127.9 20.8 196 289-488 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.7 7.3E-15 2.5E-19 132.6 20.6 221 221-490 5-236 (258)
39 3uq3_A Heat shock protein STI1 99.6 1.1E-14 3.7E-19 131.5 20.2 239 188-470 6-256 (258)
40 3e4b_A ALGK; tetratricopeptide 99.6 8.6E-15 2.9E-19 143.3 18.8 373 61-489 9-420 (452)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.2E-14 7.5E-19 130.9 19.9 243 232-484 16-269 (275)
42 3e4b_A ALGK; tetratricopeptide 99.6 3.3E-13 1.1E-17 132.1 27.8 312 24-354 7-352 (452)
43 3u4t_A TPR repeat-containing p 99.6 7.4E-14 2.5E-18 127.2 20.7 248 223-475 5-269 (272)
44 2ho1_A Type 4 fimbrial biogene 99.6 1.1E-12 3.7E-17 117.9 25.2 169 292-462 71-244 (252)
45 1ouv_A Conserved hypothetical 99.6 1.1E-12 3.8E-17 119.5 25.0 224 220-491 5-252 (273)
46 2vq2_A PILW, putative fimbrial 99.6 8.6E-13 2.9E-17 116.1 22.8 198 291-490 7-211 (225)
47 2q7f_A YRRB protein; TPR, prot 99.6 1.6E-13 5.5E-18 122.5 18.0 172 294-468 59-234 (243)
48 2ho1_A Type 4 fimbrial biogene 99.6 5.6E-13 1.9E-17 119.8 21.6 198 292-491 37-239 (252)
49 1ouv_A Conserved hypothetical 99.5 1.6E-12 5.5E-17 118.4 24.4 226 186-460 5-255 (273)
50 2vq2_A PILW, putative fimbrial 99.5 2.7E-12 9.3E-17 112.9 24.3 209 220-467 7-222 (225)
51 2q7f_A YRRB protein; TPR, prot 99.5 3.1E-13 1.1E-17 120.6 18.4 199 290-491 21-223 (243)
52 2pl2_A Hypothetical conserved 99.5 1E-12 3.4E-17 115.0 20.6 195 219-420 3-210 (217)
53 2h6f_A Protein farnesyltransfe 99.5 8.5E-13 2.9E-17 125.1 21.3 246 220-473 96-365 (382)
54 3sf4_A G-protein-signaling mod 99.5 6.6E-13 2.2E-17 128.5 20.1 298 122-478 10-364 (406)
55 4a1s_A PINS, partner of inscut 99.5 1.7E-13 5.9E-18 133.0 15.8 265 222-489 49-371 (411)
56 3u4t_A TPR repeat-containing p 99.5 1.6E-12 5.3E-17 118.3 21.1 229 258-491 4-251 (272)
57 3sf4_A G-protein-signaling mod 99.5 5.6E-13 1.9E-17 129.0 18.9 268 219-489 7-335 (406)
58 3vtx_A MAMA; tetratricopeptide 99.5 3.1E-12 1.1E-16 108.7 20.9 167 322-491 3-171 (184)
59 3ro2_A PINS homolog, G-protein 99.5 8.1E-13 2.8E-17 124.1 18.6 265 223-490 7-332 (338)
60 2h6f_A Protein farnesyltransfe 99.5 1.6E-12 5.5E-17 123.2 20.2 229 257-490 97-348 (382)
61 4abn_A Tetratricopeptide repea 99.5 4.8E-13 1.7E-17 131.7 16.7 192 291-486 101-317 (474)
62 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.7E-12 5.9E-17 118.2 16.7 220 267-491 15-245 (275)
63 4a1s_A PINS, partner of inscut 99.4 2.5E-12 8.6E-17 124.7 17.5 274 125-458 52-374 (411)
64 3ro2_A PINS homolog, G-protein 99.4 7.8E-12 2.7E-16 117.3 20.1 276 127-458 11-334 (338)
65 3ulq_A Response regulator aspa 99.4 8.7E-12 3E-16 119.6 20.3 238 162-456 109-368 (383)
66 3ulq_A Response regulator aspa 99.4 5.6E-12 1.9E-16 121.0 18.0 225 264-489 110-367 (383)
67 3vtx_A MAMA; tetratricopeptide 99.4 2.3E-11 7.9E-16 103.3 18.6 168 291-461 4-175 (184)
68 4e6h_A MRNA 3'-END-processing 99.4 2.5E-09 8.6E-14 108.2 36.2 416 36-461 48-575 (679)
69 2ond_A Cleavage stimulation fa 99.4 4E-10 1.4E-14 104.4 27.6 219 238-461 33-275 (308)
70 3nf1_A KLC 1, kinesin light ch 99.4 1.1E-12 3.7E-17 121.9 9.0 237 220-489 26-306 (311)
71 3as5_A MAMA; tetratricopeptide 99.4 4.5E-11 1.5E-15 101.4 18.2 161 327-490 11-173 (186)
72 1hz4_A MALT regulatory protein 99.4 9.9E-10 3.4E-14 104.8 29.2 265 224-489 17-321 (373)
73 4gyw_A UDP-N-acetylglucosamine 99.4 2.1E-11 7.2E-16 124.9 18.2 161 324-489 9-173 (723)
74 2ond_A Cleavage stimulation fa 99.3 1.4E-10 4.6E-15 107.5 22.0 214 274-492 33-272 (308)
75 3q15_A PSP28, response regulat 99.3 5.1E-10 1.7E-14 107.0 25.3 230 225-455 105-364 (378)
76 3nf1_A KLC 1, kinesin light ch 99.3 4.7E-12 1.6E-16 117.5 9.8 240 187-459 27-310 (311)
77 4i17_A Hypothetical protein; T 99.3 2.6E-10 8.8E-15 100.5 19.7 205 255-471 5-224 (228)
78 4abn_A Tetratricopeptide repea 99.3 1.6E-10 5.3E-15 113.8 20.1 212 236-453 83-318 (474)
79 4e6h_A MRNA 3'-END-processing 99.3 6E-09 2.1E-13 105.5 31.5 406 84-492 64-572 (679)
80 3q15_A PSP28, response regulat 99.3 4.4E-10 1.5E-14 107.5 22.1 230 161-421 106-362 (378)
81 4i17_A Hypothetical protein; T 99.3 1.4E-10 4.8E-15 102.2 17.2 189 291-491 6-210 (228)
82 3as5_A MAMA; tetratricopeptide 99.3 5.8E-10 2E-14 94.4 19.8 169 292-463 8-180 (186)
83 1hz4_A MALT regulatory protein 99.3 5.1E-09 1.7E-13 99.9 27.9 268 92-386 20-320 (373)
84 3qky_A Outer membrane assembly 99.1 4.7E-09 1.6E-13 94.5 20.6 184 290-491 13-225 (261)
85 3edt_B KLC 2, kinesin light ch 99.1 6.9E-10 2.4E-14 101.1 15.3 223 267-489 11-280 (283)
86 3mv2_B Coatomer subunit epsilo 99.1 1E-08 3.5E-13 92.1 21.4 241 228-491 20-283 (310)
87 4gyw_A UDP-N-acetylglucosamine 99.1 1.3E-09 4.4E-14 111.7 15.9 162 291-457 8-175 (723)
88 2fo7_A Synthetic consensus TPR 99.1 3.3E-09 1.1E-13 84.3 15.3 127 362-490 4-132 (136)
89 2yhc_A BAMD, UPF0169 lipoprote 99.1 9.9E-09 3.4E-13 90.0 19.6 184 292-493 4-216 (225)
90 3qky_A Outer membrane assembly 99.1 3.9E-09 1.3E-13 95.1 16.4 203 255-478 13-249 (261)
91 1qqe_A Vesicular transport pro 99.1 4E-09 1.4E-13 96.7 16.2 200 272-487 32-266 (292)
92 1qqe_A Vesicular transport pro 99.1 5.8E-09 2E-13 95.6 17.0 199 266-465 46-278 (292)
93 3edt_B KLC 2, kinesin light ch 99.0 1.7E-09 5.8E-14 98.5 13.1 228 98-353 13-281 (283)
94 3mv2_B Coatomer subunit epsilo 99.0 2.9E-08 9.9E-13 89.2 20.5 181 276-464 85-290 (310)
95 4ga2_A E3 SUMO-protein ligase 99.0 6.4E-10 2.2E-14 90.5 8.0 141 332-476 5-149 (150)
96 2fo7_A Synthetic consensus TPR 99.0 2.1E-08 7.1E-13 79.5 16.5 131 326-459 3-135 (136)
97 3rjv_A Putative SEL1 repeat pr 99.0 4.5E-08 1.6E-12 84.8 19.1 162 322-492 16-199 (212)
98 3qou_A Protein YBBN; thioredox 98.9 2.4E-08 8.1E-13 91.1 16.2 163 321-488 114-282 (287)
99 3gyz_A Chaperone protein IPGC; 98.9 1.3E-08 4.6E-13 82.2 11.5 102 390-491 30-134 (151)
100 2pzi_A Probable serine/threoni 98.9 1.3E-08 4.5E-13 104.8 14.0 169 303-476 402-583 (681)
101 4ga2_A E3 SUMO-protein ligase 98.9 5.3E-09 1.8E-13 85.0 8.7 123 365-490 3-129 (150)
102 2vsy_A XCC0866; transferase, g 98.9 2.5E-08 8.6E-13 100.8 15.6 161 305-468 2-169 (568)
103 2r5s_A Uncharacterized protein 98.9 1.7E-08 5.8E-13 84.6 12.1 157 327-488 9-171 (176)
104 2vgx_A Chaperone SYCD; alterna 98.9 1.5E-08 5E-13 82.1 11.0 98 394-491 20-119 (148)
105 4gco_A Protein STI-1; structur 98.8 6.6E-08 2.2E-12 75.7 13.2 109 360-470 14-124 (126)
106 3u3w_A Transcriptional activat 98.8 5.8E-07 2E-11 82.3 21.6 160 329-488 80-264 (293)
107 2pzi_A Probable serine/threoni 98.8 2E-07 6.7E-12 96.0 20.1 189 268-462 402-608 (681)
108 3urz_A Uncharacterized protein 98.8 9.2E-08 3.2E-12 82.6 14.9 126 330-459 60-189 (208)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.1E-07 3.7E-12 82.4 15.4 125 362-491 9-151 (213)
110 2ifu_A Gamma-SNAP; membrane fu 98.8 2.4E-07 8.1E-12 85.5 18.5 220 233-483 3-254 (307)
111 2vsy_A XCC0866; transferase, g 98.8 1.3E-07 4.6E-12 95.5 17.7 148 270-421 2-154 (568)
112 2uy1_A Cleavage stimulation fa 98.8 9.7E-06 3.3E-10 79.6 30.0 125 325-455 287-412 (493)
113 2yhc_A BAMD, UPF0169 lipoprote 98.8 2E-07 6.8E-12 81.6 16.3 187 256-463 3-220 (225)
114 3rjv_A Putative SEL1 repeat pr 98.8 3.3E-07 1.1E-11 79.3 17.2 174 275-458 4-199 (212)
115 2qfc_A PLCR protein; TPR, HTH, 98.8 2E-07 7E-12 85.3 16.8 163 326-488 77-264 (293)
116 4gco_A Protein STI-1; structur 98.8 5.7E-08 1.9E-12 76.1 11.2 100 391-490 8-110 (126)
117 1a17_A Serine/threonine protei 98.8 1.7E-07 6E-12 77.3 14.3 127 360-488 14-144 (166)
118 3dra_A Protein farnesyltransfe 98.8 2.7E-06 9.1E-11 77.3 22.8 148 338-488 124-285 (306)
119 3qou_A Protein YBBN; thioredox 98.7 7.7E-07 2.6E-11 81.0 18.8 158 260-419 120-279 (287)
120 2xcb_A PCRH, regulatory protei 98.7 2.1E-07 7.2E-12 74.7 13.1 98 394-491 17-116 (142)
121 3dra_A Protein farnesyltransfe 98.7 7.7E-06 2.6E-10 74.2 24.6 231 232-470 43-302 (306)
122 3urz_A Uncharacterized protein 98.7 4.8E-07 1.6E-11 78.0 16.1 186 223-435 6-198 (208)
123 1na0_A Designed protein CTPR3; 98.7 3E-07 1E-11 71.6 13.6 115 359-475 9-125 (125)
124 2r5s_A Uncharacterized protein 98.7 4.3E-07 1.5E-11 75.9 15.1 158 159-351 9-171 (176)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.6E-11 76.1 17.7 145 295-460 9-154 (213)
126 2vyi_A SGTA protein; chaperone 98.7 2.5E-07 8.6E-12 72.7 12.5 117 359-477 12-130 (131)
127 2lni_A Stress-induced-phosphop 98.7 2.5E-07 8.7E-12 73.0 12.5 116 359-476 16-133 (133)
128 2e2e_A Formate-dependent nitri 98.7 1.2E-07 4E-12 79.5 10.2 120 370-491 21-145 (177)
129 1p5q_A FKBP52, FK506-binding p 98.7 2.4E-07 8.3E-12 86.5 13.1 126 360-488 148-292 (336)
130 2c2l_A CHIP, carboxy terminus 98.6 1.1E-07 3.9E-12 86.2 10.5 193 291-490 3-199 (281)
131 3u3w_A Transcriptional activat 98.6 4.7E-06 1.6E-10 76.1 21.2 160 297-456 80-266 (293)
132 2uy1_A Cleavage stimulation fa 98.6 3.2E-06 1.1E-10 83.0 21.1 123 360-489 287-412 (493)
133 3upv_A Heat shock protein STI1 98.6 3.2E-07 1.1E-11 71.8 11.1 96 395-490 4-101 (126)
134 2ifu_A Gamma-SNAP; membrane fu 98.6 2.5E-07 8.4E-12 85.4 11.9 197 269-488 3-222 (307)
135 2kck_A TPR repeat; tetratricop 98.6 3.6E-07 1.2E-11 69.5 10.6 99 394-492 5-108 (112)
136 3sz7_A HSC70 cochaperone (SGT) 98.6 1.3E-06 4.5E-11 71.9 14.8 106 359-466 11-118 (164)
137 2qfc_A PLCR protein; TPR, HTH, 98.6 3.3E-06 1.1E-10 77.1 18.6 164 293-456 76-266 (293)
138 4f3v_A ESX-1 secretion system 98.6 7.7E-07 2.6E-11 78.9 12.8 135 328-467 106-247 (282)
139 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 74.5 14.2 152 337-489 5-175 (203)
140 3gyz_A Chaperone protein IPGC; 98.5 7.8E-07 2.7E-11 71.8 11.4 101 359-461 36-138 (151)
141 1hxi_A PEX5, peroxisome target 98.5 3.7E-07 1.3E-11 70.8 9.3 95 397-491 19-115 (121)
142 3q49_B STIP1 homology and U bo 98.5 1E-06 3.4E-11 70.0 12.0 99 393-491 7-107 (137)
143 2vgx_A Chaperone SYCD; alterna 98.5 5.4E-07 1.8E-11 72.8 10.3 115 347-465 10-127 (148)
144 1elw_A TPR1-domain of HOP; HOP 98.5 2E-06 7E-11 65.9 13.2 109 360-470 5-115 (118)
145 2fbn_A 70 kDa peptidylprolyl i 98.5 9.3E-07 3.2E-11 75.5 11.6 96 396-491 89-187 (198)
146 4f3v_A ESX-1 secretion system 98.5 1.5E-06 5.2E-11 77.0 13.1 127 362-491 105-238 (282)
147 3gw4_A Uncharacterized protein 98.5 1.6E-06 5.4E-11 74.3 13.0 154 303-457 3-177 (203)
148 2e2e_A Formate-dependent nitri 98.5 1.3E-06 4.3E-11 73.1 11.8 127 335-464 21-152 (177)
149 1na0_A Designed protein CTPR3; 98.5 1.4E-06 4.8E-11 67.6 11.4 97 395-491 9-107 (125)
150 1elw_A TPR1-domain of HOP; HOP 98.5 1.6E-06 5.3E-11 66.6 11.5 98 394-491 3-102 (118)
151 3upv_A Heat shock protein STI1 98.5 1.7E-06 5.8E-11 67.6 11.8 111 360-472 5-123 (126)
152 2lni_A Stress-induced-phosphop 98.5 1.4E-06 4.8E-11 68.6 11.4 98 393-490 14-113 (133)
153 2xcb_A PCRH, regulatory protei 98.5 1.3E-06 4.5E-11 69.9 11.0 108 359-468 18-127 (142)
154 2dba_A Smooth muscle cell asso 98.5 3.8E-06 1.3E-10 67.5 14.0 112 358-472 27-144 (148)
155 4gcn_A Protein STI-1; structur 98.5 9.6E-07 3.3E-11 69.1 9.9 94 396-489 9-111 (127)
156 3sz7_A HSC70 cochaperone (SGT) 98.5 2.8E-06 9.4E-11 70.0 13.1 92 397-488 13-106 (164)
157 2dba_A Smooth muscle cell asso 98.5 2.2E-06 7.6E-11 68.9 12.2 97 394-490 27-128 (148)
158 1a17_A Serine/threonine protei 98.4 6.6E-06 2.2E-10 67.6 14.4 128 326-456 15-146 (166)
159 2vyi_A SGTA protein; chaperone 98.4 3.2E-06 1.1E-10 66.2 11.4 98 394-491 11-110 (131)
160 2hr2_A Hypothetical protein; a 98.4 1.6E-06 5.4E-11 69.2 9.2 64 427-490 57-131 (159)
161 3q49_B STIP1 homology and U bo 98.4 3.9E-06 1.3E-10 66.5 11.5 111 358-470 8-125 (137)
162 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 4.4E-06 1.5E-10 81.5 13.5 131 360-490 269-415 (457)
163 2xev_A YBGF; tetratricopeptide 98.3 1.9E-06 6.6E-11 67.5 8.9 90 401-490 8-105 (129)
164 3q7a_A Farnesyltransferase alp 98.3 0.0001 3.4E-09 67.7 21.2 110 377-488 185-329 (349)
165 3rkv_A Putative peptidylprolyl 98.3 6.2E-06 2.1E-10 67.7 11.7 64 427-490 63-126 (162)
166 1wao_1 Serine/threonine protei 98.3 2.5E-06 8.5E-11 83.7 10.4 118 366-485 13-134 (477)
167 4b4t_Q 26S proteasome regulato 98.3 1.9E-05 6.6E-10 76.6 16.5 163 327-489 58-244 (434)
168 2xev_A YBGF; tetratricopeptide 98.3 1.3E-05 4.3E-10 62.7 12.3 104 364-469 7-118 (129)
169 3q7a_A Farnesyltransferase alp 98.3 0.00077 2.6E-08 61.8 25.6 233 231-470 64-346 (349)
170 1elr_A TPR2A-domain of HOP; HO 98.3 1.1E-05 3.7E-10 63.1 11.7 109 361-472 6-123 (131)
171 3k9i_A BH0479 protein; putativ 98.3 8.9E-07 3.1E-11 68.2 5.1 81 409-489 4-89 (117)
172 4gcn_A Protein STI-1; structur 98.3 1.8E-05 6E-10 61.8 12.7 95 362-458 11-114 (127)
173 1elr_A TPR2A-domain of HOP; HO 98.3 4.2E-06 1.4E-10 65.5 9.2 96 395-490 4-108 (131)
174 2kck_A TPR repeat; tetratricop 98.3 8.7E-06 3E-10 61.6 10.7 99 361-461 8-111 (112)
175 3ro3_A PINS homolog, G-protein 98.2 9.7E-06 3.3E-10 66.1 11.1 128 362-489 12-157 (164)
176 2if4_A ATFKBP42; FKBP-like, al 98.2 3.9E-06 1.3E-10 78.3 9.6 146 326-491 181-329 (338)
177 1ihg_A Cyclophilin 40; ppiase 98.2 9.8E-06 3.4E-10 76.4 12.4 90 394-483 272-363 (370)
178 1p5q_A FKBP52, FK506-binding p 98.2 2.1E-05 7.1E-10 73.3 14.5 128 326-455 149-293 (336)
179 3dss_A Geranylgeranyl transfer 98.2 0.00052 1.8E-08 62.6 22.5 165 323-490 107-304 (331)
180 3dss_A Geranylgeranyl transfer 98.2 0.00046 1.6E-08 63.0 22.1 231 232-471 40-319 (331)
181 2fbn_A 70 kDa peptidylprolyl i 98.2 2.3E-06 7.8E-11 73.1 6.5 96 395-490 38-151 (198)
182 2c2l_A CHIP, carboxy terminus 98.2 1.2E-05 4.1E-10 72.8 11.4 113 358-472 3-117 (281)
183 1hxi_A PEX5, peroxisome target 98.2 1.2E-05 4.1E-10 62.1 9.8 97 363-461 21-119 (121)
184 3rkv_A Putative peptidylprolyl 98.2 9.6E-06 3.3E-10 66.5 9.7 78 394-471 62-142 (162)
185 3k9i_A BH0479 protein; putativ 98.1 2.9E-06 1E-10 65.2 5.4 93 372-465 3-99 (117)
186 1wao_1 Serine/threonine protei 98.1 3.1E-05 1E-09 75.9 13.9 116 301-419 15-134 (477)
187 3n71_A Histone lysine methyltr 98.1 7.2E-06 2.5E-10 79.8 9.2 124 368-491 318-465 (490)
188 4b4t_Q 26S proteasome regulato 98.1 8E-05 2.7E-09 72.1 16.7 61 326-386 137-202 (434)
189 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.9E-10 64.6 10.0 132 326-457 11-159 (164)
190 2hr2_A Hypothetical protein; a 98.1 1.6E-05 5.3E-10 63.5 8.8 108 363-470 15-145 (159)
191 3ma5_A Tetratricopeptide repea 98.1 2.7E-05 9.2E-10 57.7 9.4 65 426-490 6-70 (100)
192 2l6j_A TPR repeat-containing p 98.0 1.6E-06 5.4E-11 65.9 2.3 92 394-485 3-102 (111)
193 2if4_A ATFKBP42; FKBP-like, al 98.0 2.7E-05 9.1E-10 72.6 10.5 151 292-461 179-333 (338)
194 1dce_A Protein (RAB geranylger 98.0 0.00049 1.7E-08 68.7 19.8 169 308-479 45-244 (567)
195 1na3_A Designed protein CTPR2; 98.0 4.2E-05 1.4E-09 55.2 8.8 81 395-475 9-91 (91)
196 1ihg_A Cyclophilin 40; ppiase 97.9 8.8E-05 3E-09 69.9 11.7 114 359-491 223-337 (370)
197 2kat_A Uncharacterized protein 97.9 7.7E-05 2.6E-09 56.8 9.3 77 414-490 4-82 (115)
198 3bee_A Putative YFRE protein; 97.9 0.00011 3.9E-09 53.1 9.3 70 424-493 3-75 (93)
199 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00011 3.9E-09 71.5 12.3 116 373-491 248-381 (457)
200 1klx_A Cysteine rich protein B 97.8 0.00022 7.7E-09 56.3 11.2 111 374-492 10-128 (138)
201 2l6j_A TPR repeat-containing p 97.7 0.00012 4E-09 55.2 8.2 67 425-491 2-68 (111)
202 3n71_A Histone lysine methyltr 97.7 0.00016 5.4E-09 70.4 10.3 123 334-456 319-464 (490)
203 1zu2_A Mitochondrial import re 97.7 3E-05 1E-09 61.8 4.3 85 407-491 14-121 (158)
204 1na3_A Designed protein CTPR2; 97.6 0.00029 1E-08 50.6 8.0 64 427-490 9-72 (91)
205 1pc2_A Mitochondria fission pr 97.5 0.0007 2.4E-08 53.2 10.1 65 425-489 30-99 (152)
206 3qwp_A SET and MYND domain-con 97.5 0.0003 1E-08 67.3 9.5 116 402-535 294-427 (429)
207 1zu2_A Mitochondrial import re 97.5 7.9E-05 2.7E-09 59.3 4.3 110 373-491 16-148 (158)
208 1klx_A Cysteine rich protein B 97.5 0.0024 8.1E-08 50.3 13.1 113 337-458 8-128 (138)
209 3lvg_A Clathrin heavy chain 1; 97.5 8.8E-06 3E-10 75.8 -1.7 236 88-345 56-325 (624)
210 2kat_A Uncharacterized protein 97.5 0.00052 1.8E-08 52.1 8.5 81 377-459 3-85 (115)
211 1dce_A Protein (RAB geranylger 97.4 0.0024 8.1E-08 63.7 14.9 151 337-491 42-222 (567)
212 3ly7_A Transcriptional activat 97.4 0.0073 2.5E-07 55.4 16.0 138 321-460 191-343 (372)
213 3qww_A SET and MYND domain-con 97.4 0.00027 9.3E-09 67.5 7.0 82 408-489 311-410 (433)
214 3qww_A SET and MYND domain-con 97.3 0.00088 3E-08 64.0 9.8 95 371-465 310-425 (433)
215 3qwp_A SET and MYND domain-con 97.2 0.0027 9.2E-08 60.8 12.4 101 366-466 294-415 (429)
216 1wy6_A Hypothetical protein ST 97.2 0.033 1.1E-06 42.0 15.0 140 335-493 18-157 (172)
217 2kc7_A BFR218_protein; tetratr 97.2 0.001 3.6E-08 48.6 6.9 63 402-464 7-72 (99)
218 2kc7_A BFR218_protein; tetratr 97.1 0.0026 8.8E-08 46.4 8.6 53 367-421 8-61 (99)
219 3ma5_A Tetratricopeptide repea 97.0 0.0027 9.4E-08 46.6 8.1 63 324-387 7-69 (100)
220 3mkq_A Coatomer beta'-subunit; 96.9 0.05 1.7E-06 57.2 19.5 84 220-319 680-763 (814)
221 3u64_A Protein TP_0956; tetrat 96.9 0.005 1.7E-07 54.0 9.6 87 411-497 179-276 (301)
222 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0086 2.9E-07 44.2 9.2 75 394-468 4-87 (104)
223 3lvg_A Clathrin heavy chain 1; 96.7 0.0021 7.3E-08 60.2 5.8 142 54-206 53-218 (624)
224 1nzn_A CGI-135 protein, fissio 96.6 0.014 4.7E-07 44.1 9.0 65 425-489 33-102 (126)
225 3ly7_A Transcriptional activat 96.5 0.033 1.1E-06 51.1 12.3 134 355-492 190-341 (372)
226 1pc2_A Mitochondria fission pr 96.5 0.012 4.2E-07 46.2 8.1 89 375-465 14-109 (152)
227 1y8m_A FIS1; mitochondria, unk 96.4 0.16 5.4E-06 39.0 13.7 91 424-540 36-130 (144)
228 3mkq_A Coatomer beta'-subunit; 96.3 0.099 3.4E-06 54.9 16.6 75 59-147 633-707 (814)
229 3bee_A Putative YFRE protein; 96.1 0.049 1.7E-06 39.0 9.3 70 392-461 3-77 (93)
230 2v5f_A Prolyl 4-hydroxylase su 95.8 0.049 1.7E-06 40.0 8.3 65 426-490 4-75 (104)
231 3mkq_B Coatomer subunit alpha; 95.6 0.41 1.4E-05 38.6 13.4 103 301-422 14-116 (177)
232 1qsa_A Protein (soluble lytic 95.4 2.4 8.4E-05 42.3 28.6 114 339-455 229-347 (618)
233 1nzn_A CGI-135 protein, fissio 95.4 0.15 5E-06 38.5 9.5 90 375-466 17-113 (126)
234 3o48_A Mitochondria fission 1 95.4 0.14 4.7E-06 38.8 9.2 89 424-538 37-129 (134)
235 3mkq_B Coatomer subunit alpha; 95.4 0.86 2.9E-05 36.7 16.1 84 220-319 33-116 (177)
236 4ady_A RPN2, 26S proteasome re 94.7 4.8 0.00016 42.0 25.8 251 229-489 382-657 (963)
237 3u64_A Protein TP_0956; tetrat 94.5 0.07 2.4E-06 46.9 6.4 81 376-459 180-272 (301)
238 4gns_B Protein CSD3, chitin bi 94.3 0.2 6.7E-06 51.0 10.2 55 434-488 344-398 (754)
239 1wy6_A Hypothetical protein ST 94.2 1.3 4.6E-05 33.5 13.3 65 222-288 92-156 (172)
240 4h7y_A Dual specificity protei 94.1 0.27 9.3E-06 38.1 8.1 51 441-491 74-124 (161)
241 2ff4_A Probable regulatory pro 94.0 0.14 4.8E-06 48.2 7.9 70 429-498 173-247 (388)
242 4ady_A RPN2, 26S proteasome re 93.9 6.9 0.00024 40.9 20.3 122 228-352 531-657 (963)
243 4h7y_A Dual specificity protei 93.4 0.99 3.4E-05 35.0 10.1 61 409-469 74-136 (161)
244 4b4t_P 26S proteasome regulato 92.9 6.7 0.00023 37.5 20.0 256 34-317 30-320 (445)
245 3ffl_A Anaphase-promoting comp 92.2 0.63 2.1E-05 36.9 7.8 27 462-488 123-149 (167)
246 2wpv_A GET4, UPF0363 protein Y 92.2 6.2 0.00021 35.3 16.7 166 57-247 35-214 (312)
247 3lpz_A GET4 (YOR164C homolog); 91.9 6.9 0.00023 35.3 19.8 166 57-247 37-213 (336)
248 4fhn_B Nucleoporin NUP120; pro 90.3 3.1 0.00011 45.4 13.8 55 58-113 815-869 (1139)
249 4fhn_B Nucleoporin NUP120; pro 90.0 10 0.00035 41.4 17.4 166 190-377 815-989 (1139)
250 3ffl_A Anaphase-promoting comp 89.2 2.1 7.3E-05 33.9 8.3 134 327-471 23-165 (167)
251 1v54_E Cytochrome C oxidase po 89.0 3.5 0.00012 29.3 8.3 50 420-469 38-87 (109)
252 1y8m_A FIS1; mitochondria, unk 88.3 6.1 0.00021 30.4 10.0 73 392-464 36-114 (144)
253 3lpz_A GET4 (YOR164C homolog); 88.2 14 0.00049 33.3 19.4 123 249-387 86-215 (336)
254 3o48_A Mitochondria fission 1 87.4 3.8 0.00013 31.0 8.3 73 392-464 37-115 (134)
255 4gns_B Protein CSD3, chitin bi 86.7 3.4 0.00012 42.1 10.3 51 369-422 347-398 (754)
256 3esl_A Checkpoint serine/threo 85.0 10 0.00034 31.2 10.3 55 440-494 92-148 (202)
257 2ff4_A Probable regulatory pro 84.6 4.7 0.00016 37.7 9.7 52 332-384 179-230 (388)
258 1wdy_A 2-5A-dependent ribonucl 84.6 17 0.00057 31.7 13.1 224 60-319 7-243 (285)
259 1v54_E Cytochrome C oxidase po 83.9 9.6 0.00033 27.1 9.1 63 339-403 25-87 (109)
260 2uwj_G Type III export protein 83.0 10 0.00035 26.8 9.2 85 273-363 22-106 (115)
261 2y69_E Cytochrome C oxidase su 82.6 9.5 0.00032 28.8 8.3 51 419-469 80-130 (152)
262 2wpv_A GET4, UPF0363 protein Y 82.4 27 0.00092 31.2 20.0 141 231-388 63-217 (312)
263 2p58_C Putative type III secre 82.2 11 0.00038 26.7 10.0 85 273-363 23-107 (116)
264 1zbp_A Hypothetical protein VP 80.0 3.6 0.00012 35.6 6.2 57 404-460 6-64 (273)
265 2y69_E Cytochrome C oxidase su 79.1 17 0.00059 27.5 8.6 62 340-403 69-130 (152)
266 4a1g_A Mitotic checkpoint seri 78.0 17 0.0006 28.3 9.0 49 446-494 84-134 (152)
267 2wvi_A Mitotic checkpoint seri 74.6 26 0.00089 27.7 9.3 50 446-495 79-130 (164)
268 3ltj_A Alpharep-4; protein eng 74.3 34 0.0012 27.9 17.1 113 52-172 25-137 (201)
269 4b4t_R RPN7, 26S proteasome re 73.8 30 0.001 32.7 11.5 96 294-389 133-238 (429)
270 4b4t_R RPN7, 26S proteasome re 72.5 26 0.0009 33.1 10.8 91 397-487 133-234 (429)
271 1zbp_A Hypothetical protein VP 69.4 56 0.0019 28.3 13.2 120 333-462 6-135 (273)
272 2uwj_G Type III export protein 62.8 38 0.0013 24.0 9.7 78 35-116 21-98 (115)
273 3ltm_A Alpha-REP4; protein eng 62.7 63 0.0021 26.5 20.1 17 155-171 32-48 (211)
274 2p58_C Putative type III secre 61.7 40 0.0014 23.9 9.8 78 35-116 22-99 (116)
275 3txn_A 26S proteasome regulato 59.6 1.1E+02 0.0038 28.3 28.8 283 158-492 21-345 (394)
276 3esl_A Checkpoint serine/threo 58.6 75 0.0026 26.1 10.0 57 337-394 92-149 (202)
277 4b4t_S RPN3, 26S proteasome re 57.4 63 0.0021 31.2 9.8 61 55-115 231-299 (523)
278 4aez_C MAD3, mitotic spindle c 54.9 34 0.0012 28.6 6.7 51 444-494 131-183 (223)
279 3txn_A 26S proteasome regulato 53.2 1.4E+02 0.0049 27.6 22.0 228 222-454 20-282 (394)
280 1qsa_A Protein (soluble lytic 52.3 1.9E+02 0.0065 28.8 41.8 428 23-495 40-484 (618)
281 1wdy_A 2-5A-dependent ribonucl 52.1 65 0.0022 27.7 9.0 16 436-451 225-240 (285)
282 3ltj_A Alpharep-4; protein eng 51.9 93 0.0032 25.1 19.3 60 291-352 120-179 (201)
283 4b4t_P 26S proteasome regulato 51.2 1.6E+02 0.0056 27.8 23.1 186 235-421 30-244 (445)
284 4b4t_S RPN3, 26S proteasome re 48.9 49 0.0017 31.9 7.6 26 360-385 232-257 (523)
285 2d2s_A Exocyst complex compone 48.4 58 0.002 27.6 7.4 88 92-182 24-117 (235)
286 2wvi_A Mitotic checkpoint seri 45.2 1.1E+02 0.0038 24.1 8.2 51 343-394 79-130 (164)
287 2zu6_B Programmed cell death p 45.2 1.5E+02 0.0052 26.3 9.9 64 430-493 169-234 (307)
288 1n11_A Ankyrin; clathrin, BAND 44.8 1.7E+02 0.0057 27.3 11.1 298 40-358 27-338 (437)
289 3e3v_A Regulatory protein RECX 44.5 1.2E+02 0.004 24.3 8.3 11 346-356 89-99 (177)
290 3kea_A K1L; tropism, ANK repea 44.5 1.6E+02 0.0053 25.6 11.6 19 62-80 35-53 (285)
291 3ltm_A Alpha-REP4; protein eng 43.8 1.3E+02 0.0044 24.4 18.6 50 119-172 31-80 (211)
292 4aez_C MAD3, mitotic spindle c 43.6 1.2E+02 0.0041 25.4 8.3 52 341-393 131-183 (223)
293 2fe3_A Peroxide operon regulat 43.5 60 0.0021 24.9 6.3 63 310-373 8-70 (145)
294 2pk8_A Uncharacterized protein 43.1 11 0.00039 25.9 1.7 27 517-543 12-38 (103)
295 2nsz_A Programmed cell death p 41.1 54 0.0018 24.6 5.5 63 224-288 10-74 (129)
296 3ygs_P Procaspase 9; apoptosis 40.6 43 0.0015 23.7 4.6 65 41-107 25-89 (97)
297 2nsz_A Programmed cell death p 39.6 1.2E+02 0.004 22.7 7.9 63 295-358 10-77 (129)
298 1ya0_A SMG-7 transcript varian 39.2 97 0.0033 29.9 8.2 48 434-481 159-206 (497)
299 2xig_A Ferric uptake regulatio 38.1 88 0.003 24.2 6.5 46 328-373 30-75 (150)
300 3bqo_A Telomeric repeat-bindin 37.4 1.7E+02 0.0057 23.9 8.3 63 411-473 94-163 (211)
301 2p1h_A APAF-1, apoptotic prote 37.3 79 0.0027 21.9 5.6 63 39-105 24-86 (94)
302 2r9g_A AAA ATPase, central reg 37.0 1.3E+02 0.0045 24.5 7.3 47 224-272 14-63 (204)
303 2zu6_B Programmed cell death p 36.7 2.3E+02 0.0077 25.2 12.4 61 327-388 169-231 (307)
304 2ion_A PDCD4, programmed cell 35.8 70 0.0024 24.9 5.5 63 224-288 12-76 (152)
305 2ion_A PDCD4, programmed cell 35.4 1.1E+02 0.0037 23.8 6.5 63 295-358 12-79 (152)
306 3kea_A K1L; tropism, ANK repea 35.0 1.8E+02 0.0062 25.1 9.0 91 402-496 133-223 (285)
307 4gq2_M Nucleoporin NUP120; bet 34.5 4.4E+02 0.015 27.9 13.7 126 193-338 816-950 (950)
308 4ets_A Ferric uptake regulatio 34.4 72 0.0025 25.1 5.5 43 330-372 38-82 (162)
309 4gq2_M Nucleoporin NUP120; bet 34.1 4.3E+02 0.015 28.0 12.9 127 60-200 815-949 (950)
310 3hra_A Ankyrin repeat family p 32.5 1.4E+02 0.0048 23.8 7.5 19 299-317 76-94 (201)
311 4a1g_A Mitotic checkpoint seri 32.0 1.8E+02 0.0061 22.6 9.6 52 342-394 83-135 (152)
312 2d2s_A Exocyst complex compone 31.4 1.8E+02 0.0062 24.5 7.8 88 330-421 24-117 (235)
313 3eu9_A Huntingtin-interacting 30.8 1.8E+02 0.0062 23.8 8.1 42 42-83 24-67 (240)
314 2o03_A Probable zinc uptake re 30.3 1E+02 0.0035 23.1 5.6 50 23-72 13-62 (131)
315 4ets_A Ferric uptake regulatio 29.5 1.6E+02 0.0055 23.0 6.8 70 237-307 13-84 (162)
316 2npu_A FKBP12-rapamycin comple 29.2 1.1E+02 0.0037 22.9 5.2 55 436-490 49-103 (126)
317 1oyz_A Hypothetical protein YI 29.0 2.7E+02 0.0093 23.7 19.7 14 155-168 104-117 (280)
318 3qye_A TBC1 domain family memb 28.9 3.1E+02 0.011 24.4 9.8 129 101-236 164-309 (331)
319 2fu4_A Ferric uptake regulatio 28.8 1.3E+02 0.0044 20.0 6.2 61 111-172 7-68 (83)
320 3kae_A CDC27, possible protein 28.0 2.3E+02 0.0079 22.6 10.7 76 408-486 46-139 (242)
321 3cqc_A Nuclear pore complex pr 27.6 94 0.0032 27.0 5.5 65 461-542 200-264 (270)
322 1mzb_A Ferric uptake regulatio 27.4 1.2E+02 0.0041 22.8 5.6 51 23-73 20-71 (136)
323 3bge_A Predicted ATPase; struc 27.4 1.6E+02 0.0055 24.0 6.3 47 224-271 7-56 (201)
324 2f6m_A Suppressor protein STP2 27.3 1.1E+02 0.0036 19.7 4.2 52 20-72 2-53 (65)
325 2xig_A Ferric uptake regulatio 27.2 1.3E+02 0.0043 23.2 5.7 48 24-71 30-77 (150)
326 3eyy_A Putative iron uptake re 26.8 98 0.0033 23.7 5.0 42 331-373 25-66 (145)
327 3bu8_A Telomeric repeat-bindin 26.7 1.5E+02 0.005 24.6 5.9 23 467-489 120-142 (235)
328 3mwm_A ZUR, putative metal upt 26.2 1E+02 0.0035 23.4 5.0 51 23-73 16-66 (139)
329 2fe3_A Peroxide operon regulat 26.1 1.3E+02 0.0044 23.0 5.6 44 26-69 27-70 (145)
330 1k1a_A B-cell lymphoma 3-encod 25.8 2.8E+02 0.0094 22.8 9.0 83 29-112 15-102 (241)
331 3ctd_A Putative ATPase, AAA fa 25.2 2.9E+02 0.0099 22.8 8.1 52 220-272 31-85 (213)
332 3eiq_C Programmed cell death p 24.7 4E+02 0.014 24.2 12.1 216 191-412 58-305 (358)
333 3ygs_P Procaspase 9; apoptosis 24.6 1.2E+02 0.004 21.3 4.6 32 171-202 52-83 (97)
334 3eu9_A Huntingtin-interacting 24.2 2.9E+02 0.0099 22.5 10.3 109 64-181 15-131 (240)
335 1ug3_A EIF4GI, eukaryotic prot 24.2 3.9E+02 0.013 24.0 10.0 141 295-452 14-166 (339)
336 1oyz_A Hypothetical protein YI 23.7 3.4E+02 0.012 23.1 21.3 115 52-171 34-157 (280)
337 1mzb_A Ferric uptake regulatio 23.6 1.6E+02 0.0053 22.2 5.6 43 330-372 23-66 (136)
338 3eyy_A Putative iron uptake re 23.2 1.5E+02 0.0051 22.7 5.4 49 23-72 21-69 (145)
339 3hra_A Ankyrin repeat family p 23.1 2.8E+02 0.0095 21.9 9.6 15 66-80 13-27 (201)
340 3bge_A Predicted ATPase; struc 23.0 2.1E+02 0.0073 23.3 6.2 44 92-135 10-56 (201)
341 2w57_A Ferric uptake regulatio 22.2 1.3E+02 0.0046 23.1 5.0 34 375-409 33-66 (150)
342 3twr_A Tankyrase-2; ankyrin re 22.1 2.6E+02 0.009 21.2 7.8 111 62-181 12-130 (165)
343 2w57_A Ferric uptake regulatio 22.1 1.5E+02 0.005 22.9 5.2 50 23-72 19-69 (150)
344 2o03_A Probable zinc uptake re 22.0 1.1E+02 0.0036 23.0 4.3 24 93-116 17-40 (131)
345 2ijq_A Hypothetical protein; s 21.7 1.7E+02 0.0057 23.0 5.3 56 95-150 41-104 (161)
346 3jxi_A Vanilloid receptor-rela 21.3 2.3E+02 0.0078 23.8 7.0 52 29-80 11-71 (260)
347 2cfu_A SDSA1; SDS-hydrolase, l 21.2 1.9E+02 0.0065 29.1 7.1 63 411-476 436-498 (658)
348 3bu8_A Telomeric repeat-bindin 20.9 3.6E+02 0.012 22.4 7.5 22 366-387 121-142 (235)
349 2b7e_A PRE-mRNA processing pro 20.5 68 0.0023 20.2 2.3 30 102-131 2-31 (59)
350 2qx5_A Nucleoporin NIC96; mRNA 20.5 6.6E+02 0.022 25.2 18.0 80 162-247 300-382 (661)
351 1wgl_A TOLL-interacting protei 20.2 1.1E+02 0.0038 19.2 3.3 23 473-495 35-57 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-38 Score=324.85 Aligned_cols=457 Identities=10% Similarity=0.043 Sum_probs=341.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCC--CCCcchHHHHHHHHHhcC
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQ--HKDVYLYNSLINGYVKNH 100 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~ 100 (547)
+..++..+...|++++|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+. .++..+++.++.+|.+.|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 455555566666666666666666543 3455666666666666666666666666652 355556666666666666
Q ss_pred ChhHHHHHHHHhhhC---------------CCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044812 101 GHNEALELFSNMYYS---------------NVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165 (547)
Q Consensus 101 ~~~~A~~~~~~m~~~---------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 165 (547)
++++|.++|+++... +..++..+|+.++.++.+.|++++|..+|+++.+.+ +.+...+..+...
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 243 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSN 243 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHh
Confidence 666666666632211 122234556666666666666666666666666543 2233344444433
Q ss_pred HHhcCChHHHHHH---hccCCCCC----hhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC--CChhhHHHHHHHHHHCCC
Q 044812 166 YVKCGKFSECLNL---FDEMPQRN----VGSWNVRISGHASSGDFSLVVRSRRVFDQMKR--RNVYAWTAMINGYVQNGD 236 (547)
Q Consensus 166 ~~~~g~~~~A~~~---~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~ 236 (547)
+...+..+.+... +..+...+ ...|+.++..|.+.|++++ |.++|+++.+ ++..+|+.++..|.+.|+
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR---AEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH---HHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH---HHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 3322221111110 11111111 1133444556667777777 8888988876 789999999999999999
Q ss_pred HHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 044812 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFE 316 (547)
Q Consensus 237 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 316 (547)
+++|+++|+++ ...+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 321 ~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 321 FIDVLAITTKI-LEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp HHHHHHHHHHH-HHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999 4432 3467789999999999999999999999998665 6678899999999999999999999998
Q ss_pred cC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc
Q 044812 317 DS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394 (547)
Q Consensus 317 ~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 394 (547)
++ .. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYD 474 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 74 11 4567799999999999999999999999998864 3478899999999999999999999999998752 447
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-------PVEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|++.++++.+.+|+++.+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 889999999999999999999999987 44677 789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 466 SLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.++.+|.+.|++++|.+.++++.+..
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-38 Score=326.40 Aligned_cols=413 Identities=10% Similarity=0.026 Sum_probs=315.7
Q ss_pred HHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHH
Q 044812 65 YALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIH 144 (547)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 144 (547)
+...|.+..+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34456666666666666666667777777777777777777777777764 3456666777777777777777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-------------------ChhhHHHHHHHHHcCCCchh
Q 044812 145 GLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-------------------NVGSWNVRISGHASSGDFSL 205 (547)
Q Consensus 145 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 205 (547)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 765432 556667777777777777777777777754332 25567777777777777776
Q ss_pred HHHHHHHHhhcC---CCChhh--------------------------------------HHHHHHHHHHCCCHHHHHHHH
Q 044812 206 VVRSRRVFDQMK---RRNVYA--------------------------------------WTAMINGYVQNGDLDEALVLF 244 (547)
Q Consensus 206 a~~a~~~~~~~~---~~~~~~--------------------------------------~~~li~~~~~~~~~~~A~~~~ 244 (547)
|.+.|+++. ..+... |+.++..|.+.|++++|.++|
T Consensus 219 ---A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 219 ---AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp ---HHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 444444443 222222 333466677899999999999
Q ss_pred HHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC
Q 044812 245 LEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS--FNK 322 (547)
Q Consensus 245 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~ 322 (547)
+++ .+. +++..++..++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+++++. .+.
T Consensus 296 ~~~-~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 371 (597)
T 2xpi_A 296 SSI-NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371 (597)
T ss_dssp HTS-TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHh-hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc
Confidence 999 443 5889999999999999999999999999999877 4578889999999999999999999998741 145
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044812 323 DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVV 402 (547)
Q Consensus 323 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 402 (547)
+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++|+++.+. .+.+..+|..++
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 448 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLG 448 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHH
Confidence 67889999999999999999999999998853 336789999999999999999999999999864 245889999999
Q ss_pred HHhHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC-CchHHHHHHHHHc
Q 044812 403 DMLGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL------EPEN-PSNYVSLSNLYAS 473 (547)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~l~~~~~~ 473 (547)
.+|.+.|++++|.++|+++ . ...+..+|..++.+|.+.|++++|+++|+++.+. +|.+ ..+|..++.+|.+
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999998 2 2346889999999999999999999999999987 4443 5689999999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 044812 474 SRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 474 ~g~~~~A~~~~~~m~~~~ 491 (547)
.|++++|.++++++.+.+
T Consensus 529 ~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhC
Confidence 999999999999998765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.2e-27 Score=225.52 Aligned_cols=374 Identities=12% Similarity=0.080 Sum_probs=260.7
Q ss_pred HHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHH
Q 044812 64 AYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVG 140 (547)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 140 (547)
.+.+.|++++|++.|+.+.+ | +...+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 34444555555555544421 2 22233344444445555555555555544432 22334455555555555555555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCC
Q 044812 141 MLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN 220 (547)
Q Consensus 141 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~ 220 (547)
...|+++.+.. +.+...+..+..++.+.|++++|...|+++. ...+.+
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------------------~~~p~~ 134 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSAL-------------------------------QYNPDL 134 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-------------------------------HHCTTC
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------HhCCCc
Confidence 55555554432 2233344455555555555555555444432 222335
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044812 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300 (547)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 300 (547)
...+..+...+...|++++|.+.|+++ ... .+.+..++..+...+...|++++|...++++.+.+ +.+...+..+..
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 211 (388)
T 1w3b_A 135 YCVRSDLGNLLKALGRLEEAKACYLKA-IET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN 211 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHH-HHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 566777888888888999999988888 332 23346778888888888888888888888888875 445677888888
Q ss_pred HHHhcCCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 301 MYSKCGSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
.+...|++++|...|++. ...| +..++..+...|...|++++|...|+++.+.+ +.+..++..+..++.+.|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999888762 2234 56778888999999999999999999998853 22467888888999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
.+.|+++.+.. +.+..++..+...+.+.|++++|...++++ ...| +..++..+..++.+.|++++|...++++++.
T Consensus 291 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 291 EDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999988652 457788889999999999999999999887 4445 4678889999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCC
Q 044812 457 EPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~ 476 (547)
.|.++..|..++.++...|+
T Consensus 369 ~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHhHHHHHHHccC
Confidence 99999999999988877664
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.8e-28 Score=240.81 Aligned_cols=186 Identities=12% Similarity=0.108 Sum_probs=175.6
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCC---------chhHHHHHHHHHHcCCCCc
Q 044812 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG---------LSGGKQIHGFAIRKELNHD 291 (547)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~ 291 (547)
...++.+|.+|++.|++++|+++|++| ...|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M-~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEA-RRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 346888999999999999999999999 889999999999999999987664 5789999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS---SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
..+|+++|.+|++.|++++|.++|++| ++.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999874 68899999999999999999999999999999999999999999999999
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (547)
|++.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999877 9999999999999988763
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1e-28 Score=242.59 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=165.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCC---------cHHHHHHHHHHHHhCCCCchh
Q 044812 87 YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD---------LNVGMLIHGLSIKIGFVVDVI 157 (547)
Q Consensus 87 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 157 (547)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35778888899999999999999999988999999999999998887654 578889999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCH
Q 044812 158 LANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDL 237 (547)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 237 (547)
+|++||.+|++.|++++|.++|++|.+.+. .||..+|+.+|.+|++.|++
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~------------------------------~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGI------------------------------QPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------------------------------CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------------------CCccceehHHHHHHHHCCCH
Confidence 999999999999999999999988876555 68888999999999999999
Q ss_pred HHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044812 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (547)
++|.++|++| .+.|+.||..||+.+|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 157 ~~A~~l~~~M-~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 157 DKAYEVDAHM-VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999 888999999999999999999999999999999999999999999999998888764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.8e-25 Score=216.11 Aligned_cols=376 Identities=13% Similarity=0.094 Sum_probs=308.6
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCCh
Q 044812 26 FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGH 102 (547)
Q Consensus 26 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~ 102 (547)
++..+...|++++|.+.++.+.+.. +.++..+..+...+...|++++|...++...+ .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 4566778999999999999998885 44567777888889999999999999987653 4667899999999999999
Q ss_pred hHHHHHHHHhhhCCCCCC-cchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 044812 103 NEALELFSNMYYSNVSPD-DFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181 (547)
Q Consensus 103 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 181 (547)
++|.+.|+++.+. .|+ ..+|..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999875 354 4578999999999999999999999999875 34566778888999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHH
Q 044812 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLV 261 (547)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~ 261 (547)
+.+.+ +.+..+|..+...+...|++++|+..|+++ ... .+.+...+.
T Consensus 161 al~~~-------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~~~~ 207 (388)
T 1w3b_A 161 AIETQ-------------------------------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA-VTL-DPNFLDAYI 207 (388)
T ss_dssp HHHHC-------------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHH-CTTCHHHHH
T ss_pred HHHhC-------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhc-CCCcHHHHH
Confidence 64321 235677888888899999999999999888 442 123456778
Q ss_pred hHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCC
Q 044812 262 SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGK 339 (547)
Q Consensus 262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~ 339 (547)
.+...+...|++++|...+.+..+.. +.+..++..+..+|.+.|++++|...|++. ...| +..+|..+...+.+.|+
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 88888889999999999998888765 446778888999999999999999999873 2233 56788999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHH
Q 044812 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIK 419 (547)
Q Consensus 340 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 419 (547)
+++|...|+++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|...|+
T Consensus 287 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 287 VAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998863 457888999999999999999999999998753 23467888999999999999999999998
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCC
Q 044812 420 TM-PVEPS-PSIWGALVSASVMHGN 442 (547)
Q Consensus 420 ~~-~~~p~-~~~~~~l~~~~~~~~~ 442 (547)
++ ...|+ ...|..+...+...|+
T Consensus 364 ~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 364 EAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhhCCCCHHHHHhHHHHHHHccC
Confidence 87 55564 5678888777766553
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.9e-23 Score=209.88 Aligned_cols=265 Identities=10% Similarity=-0.017 Sum_probs=217.9
Q ss_pred hhhHHHHHHHHHH---CCCHHHHHHHHHHchhc-----CCCCC--------ChHHHHhHHHHhhccCCchhHHHHHHHHH
Q 044812 221 VYAWTAMINGYVQ---NGDLDEALVLFLEMQLK-----DRIEP--------NKVSLVSVLPTCSSLIGLSGGKQIHGFAI 284 (547)
Q Consensus 221 ~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~-----~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 284 (547)
...+......+.. .|++++|+.+|+++ .. ....| +..++..+...+...|+++.|...++.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 264 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKA-ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHH-HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHH-HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555555554 89999999999988 44 21122 34567788888999999999999999998
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 044812 285 RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362 (547)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 362 (547)
+.... ...+..+..++...|++++|...+++. .. +.+...+..+...|...|++++|...++++.+.. +.+...+
T Consensus 265 ~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 265 ELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp HHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred hhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 87644 788888999999999999999999862 22 3466788899999999999999999999998863 2256788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHH
Q 044812 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM----PVEPS----PSIWGALV 434 (547)
Q Consensus 363 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~ 434 (547)
..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++ +..++ ...|..+.
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 888999999999999999999988652 336778888999999999999999999887 22222 44888899
Q ss_pred HHHHH---cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 435 SASVM---HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 435 ~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.++.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 99999 9999999999999999999999999999999999999999999999987654
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.4e-23 Score=209.21 Aligned_cols=438 Identities=8% Similarity=-0.036 Sum_probs=310.7
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHh
Q 044812 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVK 98 (547)
Q Consensus 22 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~ 98 (547)
.+......+...|++++|...++.+.+.+ |++..+..+..++.+.|++++|+..|+.+.+ | +..+|..+..++.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45677788888999999999999999986 7899999999999999999999999988753 3 45688889999999
Q ss_pred cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhcCChHHH
Q 044812 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSL---MSMYVKCGKFSEC 175 (547)
Q Consensus 99 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~g~~~~A 175 (547)
.|++++|...|+.+.+.+. ++......++..+........+.+.+..+...+..|+......- ............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999988753 34444444444333322222222222211111111110000000 0000000111111
Q ss_pred HHHhccCC---------CC-ChhhHHHHHHHHHc---CCCchhHHHHHHHHhh-----c--C-------CCChhhHHHHH
Q 044812 176 LNLFDEMP---------QR-NVGSWNVRISGHAS---SGDFSLVVRSRRVFDQ-----M--K-------RRNVYAWTAMI 228 (547)
Q Consensus 176 ~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~a~~a~~~~~~-----~--~-------~~~~~~~~~li 228 (547)
...+.... .+ +...+......+.. .|++++|....+-... . . +.+...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11111111 11 12233333333443 5666663332222222 1 0 12456788899
Q ss_pred HHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044812 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 308 (547)
..+...|++++|+..|+++ ... .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~-l~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKA-IEL--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHH-HHH--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHH-Hhh--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 9999999999999999998 443 3347788899999999999999999999998765 45677899999999999999
Q ss_pred HHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 309 DCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 309 ~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
++|...|++. .. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999872 12 4466789999999999999999999999998863 3356788899999999999999999999987
Q ss_pred HhcCCCCc----hhHHHHHHHHhHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 387 NTYRIKPT----TEICACVVDMLGR---AGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 387 ~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
+...-.++ ...+..+...+.. .|++++|...++++ ...| +..++..+..++...|++++|...++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 65322222 3388899999999 99999999999987 2334 57789999999999999999999999999999
Q ss_pred CCCCchHHHH
Q 044812 458 PENPSNYVSL 467 (547)
Q Consensus 458 ~~~~~~~~~l 467 (547)
|.++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 9988777666
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=3.6e-22 Score=201.73 Aligned_cols=426 Identities=10% Similarity=-0.006 Sum_probs=222.4
Q ss_pred hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHh
Q 044812 22 TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVK 98 (547)
Q Consensus 22 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~ 98 (547)
.+......+...|+++.|...++.+.+.. +.++..+..+...|.+.|++++|++.|+.+.+ .+..++..+...+..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 46777778888888888888888888875 45678888888888888888888888887643 356677788888888
Q ss_pred cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHH
Q 044812 99 NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIG--FVVDVILANSLMSMYVKCGKFSECL 176 (547)
Q Consensus 99 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~ 176 (547)
.|++++|...|+.+.. .|+... ..+..+...+....+...++.+.... ..+........+..+....+.+.+.
T Consensus 106 ~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 8888888888863322 222211 12223333444566777777765431 0111112233445566677777777
Q ss_pred HHhccCCCCChh---hHHHHHHHHHcCC--------CchhHHHHHHHHhhcCC---CCh-------hhHHHHHHHHHHCC
Q 044812 177 NLFDEMPQRNVG---SWNVRISGHASSG--------DFSLVVRSRRVFDQMKR---RNV-------YAWTAMINGYVQNG 235 (547)
Q Consensus 177 ~~~~~~~~~~~~---~~~~li~~~~~~g--------~~~~a~~a~~~~~~~~~---~~~-------~~~~~li~~~~~~~ 235 (547)
..+......+.. ....+...+...+ ++++ |...++.+.+ .+. .+|..+...+...|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~---A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK---STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH---HHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH---HHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 777776654433 2222222222221 2333 4444443322 111 23444455555566
Q ss_pred CHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044812 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVF 315 (547)
Q Consensus 236 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 315 (547)
++++|+..|++. .. ..|+...+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...|
T Consensus 258 ~~~~A~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQES-IN--LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHH-HH--HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-Hh--cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 666666666555 33 23334555555555555666666666655555543 234445555555555555555555555
Q ss_pred hcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC
Q 044812 316 EDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393 (547)
Q Consensus 316 ~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 393 (547)
++. .. +.+...|..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+...-.+
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 441 11 2233445555555555555555555555555432 12334455555555555555555555555443210000
Q ss_pred ----chhHHHHHHHHhHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 394 ----TTEICACVVDMLGRA----------GQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 394 ----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
....+......+.+. |++++|...+++. ...| +...+..+..++...|++++|.+.|+++.+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 011122223334444 5555555555444 1122 33444555555555555555555555555555
Q ss_pred CCCC
Q 044812 458 PENP 461 (547)
Q Consensus 458 ~~~~ 461 (547)
|.++
T Consensus 493 ~~~~ 496 (537)
T 3fp2_A 493 RTMD 496 (537)
T ss_dssp --CH
T ss_pred CCcH
Confidence 4443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.5e-21 Score=192.62 Aligned_cols=344 Identities=12% Similarity=0.060 Sum_probs=228.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044812 85 DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMS 164 (547)
Q Consensus 85 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 164 (547)
+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...++.+++.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34567777777777788888888887777642 2356667777777788888888888888877765 345677777888
Q ss_pred HHHhcCChHHHHHHhccCCCCCh------hhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHH
Q 044812 165 MYVKCGKFSECLNLFDEMPQRNV------GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238 (547)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 238 (547)
+|.+.|++++|...|+++.+.+. ..+..++..+. ...+..+...+...|+++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE----------------------MQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH----------------------HHHHHHHHHHHHHcCCHH
Confidence 88888888888888877755322 23333322211 112334466678888888
Q ss_pred HHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 044812 239 EALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS 318 (547)
Q Consensus 239 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (547)
+|+..|+++ ... .+.+...+..+..++...|++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++
T Consensus 161 ~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 161 AAIAFLDKI-LEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887 332 23456677778888888888888888888887764 456677788888888888888888888763
Q ss_pred -CCCCC-hhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHH
Q 044812 319 -SFNKD-AITWSSI------------VSGYGLHGKGHEAVLLYNKMVCLGSKPD-----IITIVGVLSACGRSGLINEGL 379 (547)
Q Consensus 319 -~~~~~-~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~a~ 379 (547)
...|+ ...+..+ ...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|.
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 22333 3334333 66777777777777777777764 343 335666777777777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHHcC----
Q 044812 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-PSIWGALVSA------------SVMHG---- 441 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~~---- 441 (547)
..++++.+.. +.+...+..+..+|...|++++|...++++ ...|+ ...+..+..+ |...|
T Consensus 316 ~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 316 RVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 7777776541 235667777777777777777777777766 44453 4455555422 22233
Q ss_pred -CHHHHHHHHHH-HHhhCCC
Q 044812 442 -NSEMQDLAYKS-LIQLEPE 459 (547)
Q Consensus 442 -~~~~a~~~~~~-~~~~~~~ 459 (547)
+.+++.+.+++ .++..|+
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGG
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 45566666665 4555554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.8e-22 Score=195.53 Aligned_cols=327 Identities=14% Similarity=0.084 Sum_probs=261.6
Q ss_pred CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHc
Q 044812 120 DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHAS 199 (547)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 199 (547)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 45566777777778888888888888777654 446677777777788888888887777765322
Q ss_pred CCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh----HHHHhH------------
Q 044812 200 SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK----VSLVSV------------ 263 (547)
Q Consensus 200 ~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~----~~~~~l------------ 263 (547)
.+.+...|..++.+|.+.|++++|...|+++ .. ..|+. ..+..+
T Consensus 90 -----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 90 -----------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKV-LK--SNPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HT--SCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh--cCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 1345778888999999999999999999998 44 34443 444444
Q ss_pred HHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-C-CCChhhHHHHHHHHHhcCChH
Q 044812 264 LPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS-F-NKDAITWSSIVSGYGLHGKGH 341 (547)
Q Consensus 264 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~ 341 (547)
...+...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|...|++.- . +.+..+|..+...|...|+++
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 445889999999999999999875 5678889999999999999999999998731 1 456788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHH------------HHHHhccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHH
Q 044812 342 EAVLLYNKMVCLGSKPD-IITIVGV------------LSACGRSGLINEGLEIYNSVINTYRIKPT-----TEICACVVD 403 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~-~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~ 403 (547)
+|...|+++... .|+ ...+..+ ...+...|++++|...|+++.+. .|+ ...+..+..
T Consensus 229 ~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 229 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHH
Confidence 999999999875 444 4444444 78899999999999999999875 343 457888999
Q ss_pred HhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH------------
Q 044812 404 MLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN------------ 469 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~------------ 469 (547)
.+.+.|++++|...++++ ...| +..+|..++.+|...|++++|...++++++..|.++..+..++.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchh
Confidence 999999999999999987 3345 67899999999999999999999999999999999999999884
Q ss_pred HHHcCC-----CHHHHHHHHHHH
Q 044812 470 LYASSR-----RWDAVAELRTMM 487 (547)
Q Consensus 470 ~~~~~g-----~~~~A~~~~~~m 487 (547)
.|...| +.+++.+.++++
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHhCCCccCCHHHHHHHHHHH
Confidence 455555 556677777763
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=5.1e-21 Score=193.34 Aligned_cols=422 Identities=10% Similarity=0.047 Sum_probs=324.8
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHH
Q 044812 54 NPFVSTKLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKL 130 (547)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 130 (547)
....+..+...+.+.|++++|+..|+.+.+ .+..+|..+..++.+.|++++|++.|+++.+.+. .+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 356778889999999999999999999854 4677899999999999999999999999998652 356788889999
Q ss_pred HccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC------ChhhHHHHHHHHHcCCCch
Q 044812 131 SGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR------NVGSWNVRISGHASSGDFS 204 (547)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 204 (547)
+...|++++|...++ .... .|+. ....+..+...+....|...++++... ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 3332 2222 222344566667778888888887652 1123344455566666655
Q ss_pred hHHHHHHHHhhcCCCChh---hHHHHHHHHHH--------CCCHHHHHHHHHHchhcCCCCCC--------hHHHHhHHH
Q 044812 205 LVVRSRRVFDQMKRRNVY---AWTAMINGYVQ--------NGDLDEALVLFLEMQLKDRIEPN--------KVSLVSVLP 265 (547)
Q Consensus 205 ~a~~a~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~A~~~~~~m~~~~~~~p~--------~~~~~~ll~ 265 (547)
. +...+......+.. ....+...+.. .|++++|+.+|+++ .+ ..|+ ..++..+..
T Consensus 178 ~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~-l~--~~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 178 L---EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL-LS--ANTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp H---HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH-HC----CCCHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HH--HCCCcchhhHHHHHHHHHHHH
Confidence 5 55555554443332 33333333322 25899999999998 44 2333 235777778
Q ss_pred HhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHH
Q 044812 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEA 343 (547)
Q Consensus 266 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a 343 (547)
.+...|+++.|...++.+.+.. |+...+..+...+...|++++|...|++. .. +.+..+|..+...+...|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 8899999999999999999875 44788899999999999999999999862 21 44677899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC--
Q 044812 344 VLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-- 421 (547)
Q Consensus 344 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 421 (547)
...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999998864 2246788899999999999999999999998752 346778899999999999999999999986
Q ss_pred --C----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 422 --P----VEPSPSIWGALVSASVMH----------GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 422 --~----~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
+ .......+..+..++... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.++
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1 112233455666777888 999999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 044812 486 MMKDRGL 492 (547)
Q Consensus 486 ~m~~~~~ 492 (547)
+..+...
T Consensus 487 ~al~~~~ 493 (537)
T 3fp2_A 487 DSAILAR 493 (537)
T ss_dssp HHHHHC-
T ss_pred HHHHhCC
Confidence 9877553
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=4.7e-19 Score=168.86 Aligned_cols=207 Identities=10% Similarity=0.036 Sum_probs=129.6
Q ss_pred HHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHH
Q 044812 265 PTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHE 342 (547)
Q Consensus 265 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~ 342 (547)
..+...|++++|...++.+.+.. +.+..++..+..++...|++++|...+++. .. +.+...+..+...|...|++++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44555555555555555555543 344556666777777777777777777652 11 3345667777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHHHHhcCCCCch--hHHHHHHHHhHhc
Q 044812 343 AVLLYNKMVCLGSKPDIITIV------------GVLSACGRSGLINEGLEIYNSVINTYRIKPTT--EICACVVDMLGRA 408 (547)
Q Consensus 343 a~~~~~~m~~~g~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 408 (547)
|...+++..+... .+...+. .+...+...|++++|...++++.+...-.+.. ..+..+...+...
T Consensus 207 A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 207 SLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 7777777766421 1222222 22445677777777777777776542111111 2344566777777
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 409 GQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 409 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
|++++|...+++. ...| +..+|..+..++...|++++|...|+++++.+|.++..+..+..+...
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 7777777777766 2233 566777777777777777777777777777777777777766666543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=5.9e-18 Score=161.21 Aligned_cols=301 Identities=11% Similarity=0.037 Sum_probs=221.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHC
Q 044812 155 DVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQN 234 (547)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~ 234 (547)
+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------------------------------p~~~~~~~~~a~~~~~~ 50 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------------------------------PDNYIAYYRRATVFLAM 50 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------TTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------------------cccHHHHHHHHHHHHHc
Confidence 34566777778888888888888887754311 22444555556666666
Q ss_pred CCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCC--CchhHHHH------------HHH
Q 044812 235 GDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELN--HDVSLCNA------------LID 300 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~------------l~~ 300 (547)
|++++|+..|+++ ... .+.+...+..+...+...|++++|...++.+.+.... .+...+.. +..
T Consensus 51 ~~~~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 51 GKSKAALPDLTKV-IAL-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp TCHHHHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-HHh-CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655 221 1223445555556666666666666666665544310 22333333 367
Q ss_pred HHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 301 MYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
.+...|++++|...+++. .. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999999873 11 4567789999999999999999999999999863 34678899999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHH------------HHHHHhHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHc
Q 044812 379 LEIYNSVINTYRIKPTTEICA------------CVVDMLGRAGQLDRALDFIKTM-PVEPS-P----SIWGALVSASVMH 440 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~ 440 (547)
...+++..+.. +.+...+. .+...+.+.|++++|...++++ ...|+ . ..+..+..++...
T Consensus 208 ~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 99999998652 22333332 2366789999999999999987 33343 2 2355678899999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
|++++|...++++.+..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999988643
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=1.5e-17 Score=165.52 Aligned_cols=378 Identities=10% Similarity=0.007 Sum_probs=285.5
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCchhHHHHhccCCC-CCcchHHHHHHHHHh----cCChhHHHHHHH
Q 044812 40 KQSHSQILSLGHISNPFVSTKLITAYAL----CGQPTQSQLVFNSIQH-KDVYLYNSLINGYVK----NHGHNEALELFS 110 (547)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~A~~~~~ 110 (547)
...++...+.| ++..+..+...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|...|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 44444444444 67777777777777 7888888888877644 456677777777877 788888888888
Q ss_pred HhhhCCCCCCcchHHHHHHHHcc----CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHHHHhccC
Q 044812 111 NMYYSNVSPDDFTLATISKLSGE----IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVK----CGKFSECLNLFDEM 182 (547)
Q Consensus 111 ~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 182 (547)
+..+.| +...+..+...+.. .+++++|..+|+...+.| +...+..|..+|.. .+++++|...|++.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 887764 55666667777766 678888888888887765 45666677777776 67777777777664
Q ss_pred CCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHH----CCCHHHHHHHHHHchhcCCCCCChH
Q 044812 183 PQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ----NGDLDEALVLFLEMQLKDRIEPNKV 258 (547)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~ 258 (547)
.+ ..+...+..+...|.. .+++++|+++|++. .+.+ +..
T Consensus 178 ~~---------------------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a-~~~~---~~~ 220 (490)
T 2xm6_A 178 AE---------------------------------QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKS-ATSG---DEL 220 (490)
T ss_dssp HH---------------------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHH
T ss_pred HH---------------------------------CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH-HHCC---CHH
Confidence 32 1355667777777777 78899999999887 4543 455
Q ss_pred HHHhHHHHhhc----cCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCCCCChhhHHHH
Q 044812 259 SLVSVLPTCSS----LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK----CGSLDCARRVFEDSSFNKDAITWSSI 330 (547)
Q Consensus 259 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l 330 (547)
.+..+...+.. .+++++|...++...+.+ +...+..+..+|.. .+++++|..+|++.--..+...+..+
T Consensus 221 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~L 297 (490)
T 2xm6_A 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYL 297 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666664 778888999888887765 45567777778877 89999999999874324566777888
Q ss_pred HHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044812 331 VSGYGLH-----GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG---LINEGLEIYNSVINTYRIKPTTEICACVV 402 (547)
Q Consensus 331 i~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 402 (547)
...|... +++++|..+|++..+.| +...+..+...+...| +.++|.+.|++..+. .+...+..+.
T Consensus 298 g~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg 370 (490)
T 2xm6_A 298 AHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLG 370 (490)
T ss_dssp HHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHH
Confidence 8888887 89999999999998875 4456667777776656 789999999998764 3577888888
Q ss_pred HHhHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHH
Q 044812 403 DMLGR----AGQLDRALDFIKTMPVEPSPSIWGALVSASVM----HGNSEMQDLAYKSLIQLEPE---NPSNYVSLSNLY 471 (547)
Q Consensus 403 ~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~ 471 (547)
..|.. .+++++|..+|++.....+...+..|...|.. .++.++|...|+++.+.+|. ++.....++.++
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 88888 89999999999987333567788889999988 89999999999999999843 666777776665
Q ss_pred Hc
Q 044812 472 AS 473 (547)
Q Consensus 472 ~~ 473 (547)
..
T Consensus 451 ~~ 452 (490)
T 2xm6_A 451 AK 452 (490)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.9e-18 Score=161.32 Aligned_cols=187 Identities=12% Similarity=0.100 Sum_probs=125.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
+...+..+..++...|++++|...|++. .. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 202 (330)
T 3hym_B 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVV 202 (330)
T ss_dssp CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555666666666666666666542 11 2234555566667777777777777777776642 2345666777777
Q ss_pred HhccCcHHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYR-------IKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVM 439 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 439 (547)
+...|++++|...++++.+... .+.....+..+...+...|++++|...+++. ...| +...|..+..++..
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 7777777777777777665321 1224567777888888888888888888776 2223 55678888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH-HcCCCHH
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY-ASSRRWD 478 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 478 (547)
.|++++|.+.++++.+..|.++..+..++.++ ...|+.+
T Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred hccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 88888888888888888888888888888887 4555543
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.4e-18 Score=162.65 Aligned_cols=348 Identities=9% Similarity=0.049 Sum_probs=130.9
Q ss_pred hcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHH
Q 044812 67 LCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGL 146 (547)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 146 (547)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5578999999999986664 8889999999999999999999653 5778999999999999999999998887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHH
Q 044812 147 SIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTA 226 (547)
Q Consensus 147 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~ 226 (547)
..+. .++..+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++ |...|..+ ..|..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yee---A~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDA---AKLLYNNV-----SNFGR 153 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTT---HHHHHHHT-----TCHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHH---HHHHHHHh-----hhHHH
Confidence 7764 44577788899999999999998877753 444455555555555555555 44444443 24555
Q ss_pred HHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 044812 227 MINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG 306 (547)
Q Consensus 227 li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 306 (547)
++.++.+.|++++|.+.++++ .++.+|..++.+|...|
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA------------------------------------------~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA------------------------------------------NSTRTWKEVCFACVDGK 191 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH------------------------------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHc------------------------------------------CCchhHHHHHHHHHHcC
Confidence 555555555555555555444 14556666666666666
Q ss_pred CHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 307 SLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 307 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
+++.|......+...| .....++..|.+.|++++|..+++...... +-....|+.|...+++- ++++..+.++...
T Consensus 192 ef~lA~~~~l~L~~~a--d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~ 267 (449)
T 1b89_A 192 EFRLAQMCGLHIVVHA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFW 267 (449)
T ss_dssp CHHHHHHTTTTTTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCH--hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 6666655544433223 223456677777777777777777766542 22344555555444443 2333333333333
Q ss_pred HhcCCCC------chhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 387 NTYRIKP------TTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 387 ~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+-+++| +...|..++..|...++++.|....-+-+ |+..--..+.....+..+.+---+...--++..
T Consensus 268 ~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~--- 342 (449)
T 1b89_A 268 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--- 342 (449)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC---
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC---
Confidence 3334444 46678888888999999998887665542 222222223333345555443333333333333
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
|..++.|..++...=+.+.+.+++++
T Consensus 343 p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 343 PLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp GGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34566666666666666666666654
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=2.6e-18 Score=160.85 Aligned_cols=352 Identities=10% Similarity=0.071 Sum_probs=168.3
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHH
Q 044812 26 FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA 105 (547)
Q Consensus 26 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 105 (547)
.-.++..+|++++|.++++++ +++.+|..|..++.+.|++++|++.|.+. +|...|..++.++...|++++|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHH
Confidence 345667889999999999988 44569999999999999999999999764 5666899999999999999999
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC
Q 044812 106 LELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR 185 (547)
Q Consensus 106 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 185 (547)
+..++..++. .+++.+...++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 9988777764 4567889999999999999999998874 467789999999999999999999999988
Q ss_pred ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHH
Q 044812 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLP 265 (547)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 265 (547)
..|..++.++.+.|+++. |.+.+.+. .++.+|..++.+|+..|+++.|......+ .+.|+ -...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~---AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----~~~ad--~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQA---AVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI----VVHAD--ELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHH---HHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTT----TTCHH--HHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHH---HHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHH----HhCHh--hHHHHHH
Confidence 489999999999999999 66666666 48899999999999999999996665443 13443 3556889
Q ss_pred HhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHHHHHHhc-CCCCC------ChhhHHHHHHHHHh
Q 044812 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC--GSLDCARRVFED-SSFNK------DAITWSSIVSGYGL 336 (547)
Q Consensus 266 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~-~~~~~------~~~~~~~li~~~~~ 336 (547)
.|.+.|.++++..+++...... +.....|+-|.-+|++- +++.+.++.|.. +.++| +...|..+...|..
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888665 55677888887777764 566777777754 55333 46679999999999
Q ss_pred cCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 044812 337 HGKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
.++++.|... |.+. ...-+...|.-++ .+..+.+--.+...-.... . +...+.|+.++...=+...+.
T Consensus 295 ~~e~d~A~~t---m~~h~~~a~~~~~f~~~~---~kv~n~elyYkai~fyl~~---~--p~~l~~ll~~l~~~ld~~r~v 363 (449)
T 1b89_A 295 YEEYDNAIIT---MMNHPTDAWKEGQFKDII---TKVANVELYYRAIQFYLEF---K--PLLLNDLLMVLSPRLDHTRAV 363 (449)
T ss_dssp TTCHHHHHHH---HHHSTTTTCCHHHHHHHH---HHCSSTHHHHHHHHHHHHH---C--GGGHHHHHHHHGGGCCHHHHH
T ss_pred hchHHHHHHH---HHhCChhhhhhHHHHHHH---hchhHHHHHHHHHHHHHhc---C--HHHHHHHHHHHHhccCcHHHH
Confidence 9999988764 4443 1122344444444 3333333322222222222 2 334566666666666777777
Q ss_pred HHHHhCC
Q 044812 416 DFIKTMP 422 (547)
Q Consensus 416 ~~~~~~~ 422 (547)
.+|++.+
T Consensus 364 ~~~~~~~ 370 (449)
T 1b89_A 364 NYFSKVK 370 (449)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 7777664
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.1e-17 Score=155.39 Aligned_cols=266 Identities=11% Similarity=0.026 Sum_probs=226.5
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHH
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 298 (547)
.+...+..++..+...|++++|+++|+++... .+.+...+..++.++...|++++|...++.+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 45667888899999999999999999998333 23344566677788899999999999999999875 5567788999
Q ss_pred HHHHHhcC-CHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 044812 299 IDMYSKCG-SLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLI 375 (547)
Q Consensus 299 ~~~~~~~g-~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 375 (547)
...+...| ++++|...|++ ... +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999987 232 3456789999999999999999999999998864 22456677788999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHHcCCHH
Q 044812 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP-V----------EPSPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~~~~ 444 (547)
++|...++++.+. .+.+...+..+...+...|++++|...+++.. . ..+..++..+..++...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999864 23467889999999999999999999998761 1 334678999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+|...++++.+..|.++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999987643
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=4.2e-16 Score=155.03 Aligned_cols=354 Identities=12% Similarity=0.026 Sum_probs=285.9
Q ss_pred CCcchHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHcc----CCCcHHHHHHHHHHHHhCCCCc
Q 044812 84 KDVYLYNSLINGYVK----NHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE----IKDLNVGMLIHGLSIKIGFVVD 155 (547)
Q Consensus 84 ~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 155 (547)
.+..++..+...|.. .+++++|+..|+...+.| +...+..+...+.. .+++++|..+|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466677777777777 788889999988888764 56677777777777 788888988888888765 5
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHH
Q 044812 156 VILANSLMSMYVK----CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGY 231 (547)
Q Consensus 156 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~ 231 (547)
...+..|...|.. .+++++|...|++..+. .+...+..+...|
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------------------~~~~a~~~Lg~~y 157 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ---------------------------------GRDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---------------------------------CCHHHHHHHHHHH
Confidence 5666777777777 67888888888764321 2455677778888
Q ss_pred HH----CCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhc----cCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044812 232 VQ----NGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS----LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303 (547)
Q Consensus 232 ~~----~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (547)
.. .+++++|+++|++. .+.+ +...+..+...+.. .++.++|...++...+.+ +...+..+...|.
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a-~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKA-AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYY 230 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 77 78999999999998 5543 56777778888877 899999999999999876 5667788888888
Q ss_pred h----cCCHHHHHHHHhcCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 044812 304 K----CGSLDCARRVFEDSSFNKDAITWSSIVSGYGL----HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS--- 372 (547)
Q Consensus 304 ~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--- 372 (547)
. .+++++|..+|++.--..+...+..+...|.. .+++++|..+|++..+.| +...+..+...+...
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC
Confidence 6 88999999999874324566778888888887 899999999999998865 455667777777766
Q ss_pred --CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCH
Q 044812 373 --GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG---QLDRALDFIKTMPVEPSPSIWGALVSASVM----HGNS 443 (547)
Q Consensus 373 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 443 (547)
+++++|...|++..+. + +...+..+...|...| ++++|.++|++.....+...+..|...|.. .+++
T Consensus 308 ~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 383 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDE 383 (490)
T ss_dssp BCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 8999999999999764 3 4567777888887766 889999999987434678889999999998 8999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHc----CCCHHHHHHHHHHHHhCCC
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNLYAS----SRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 492 (547)
++|...|+++.+.+ ++..+..|+.+|.. .+++++|.+.+++..+.+.
T Consensus 384 ~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 384 QQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999998865 57789999999998 8999999999999988774
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=5.5e-16 Score=155.83 Aligned_cols=417 Identities=9% Similarity=0.032 Sum_probs=275.0
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 044812 43 HSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSP 119 (547)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 119 (547)
++..++.. +-+...|..++. +.+.|++++|..+|+.+.+ | +...|..++..+.+.|++++|..+|+++.... |
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 34444443 345667777777 3667888888888877754 3 44567777777778888888888888877653 5
Q ss_pred CcchHHHHHHHH-ccCCCcHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChHHHHHHhccCC
Q 044812 120 DDFTLATISKLS-GEIKDLNVGML----IHGLSIKI-GFVV-DVILANSLMSMYVK---------CGKFSECLNLFDEMP 183 (547)
Q Consensus 120 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 183 (547)
+...|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 655555555422 34466665554 56655443 4333 34566666665544 677888888887765
Q ss_pred C-CCh---hhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHch-----hcC---
Q 044812 184 Q-RNV---GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQ-----LKD--- 251 (547)
Q Consensus 184 ~-~~~---~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~-----~~~--- 251 (547)
+ |.. ..|..........| ..+...++. .+.+++..|..++.... .+.
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~-------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGIN-------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHC-------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred hchhhhHHHHHHHHHHHHHhhc-------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4 211 11211111000000 001111111 12345666666665420 111
Q ss_pred CCCCCh--------HHHHhHHHHhhc----cCCc----hhHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCH
Q 044812 252 RIEPNK--------VSLVSVLPTCSS----LIGL----SGGKQIHGFAIRKELNHDVSLCNALIDMYSK-------CGSL 308 (547)
Q Consensus 252 ~~~p~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~ 308 (547)
.++|+. ..|...+..... .++. +.+...|+++.... +.+...|..++..+.+ .|++
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccch
Confidence 134431 334444332222 1232 36677888888764 5577888888888875 6887
Q ss_pred H-------HHHHHHhc-CC-CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhccCcHH
Q 044812 309 D-------CARRVFED-SS-FNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-I-ITIVGVLSACGRSGLIN 376 (547)
Q Consensus 309 ~-------~A~~~~~~-~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-~~~~~l~~~~~~~g~~~ 376 (547)
+ +|..+|++ +. +.| +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|+++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHH
Confidence 7 89999987 32 345 4678999999999999999999999999984 554 2 47888888888999999
Q ss_pred HHHHHHHHHHHhcCCCC-chhHHHHHHHH-hHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKP-TTEICACVVDM-LGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
+|..+|++..+. .| +...|...+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++
T Consensus 374 ~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 374 SGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 999999999864 33 33333332222 34689999999999976 3334 577999999999999999999999999
Q ss_pred HHhhCCCCCc----hHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 453 LIQLEPENPS----NYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 453 ~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+++..|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998776665 7888888889999999999999988654
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.2e-17 Score=159.70 Aligned_cols=262 Identities=12% Similarity=0.025 Sum_probs=208.9
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...+..+...+.+.|++++|+..|+++ .+. .+.+...+..+..++...|++++|...++.+.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~ 139 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAA-VQQ-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALA 139 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHH-HHS-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3456777888888888888888888887 442 23456677778888888888888888888888775 45677888888
Q ss_pred HHHHhcCCHHHHHHHHhcC-CCCCC-hhhHHH---------------HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHH
Q 044812 300 DMYSKCGSLDCARRVFEDS-SFNKD-AITWSS---------------IVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIIT 361 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~ 361 (547)
.+|...|++++|...+++. ...|+ ...+.. .+..+...|++++|...++++.+..... +..+
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 8888888888888888752 11222 222211 2333448899999999999998864221 4788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVM 439 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 439 (547)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ...| +..++..+..++..
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999998652 346788999999999999999999999987 3334 57799999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 440 HGNSEMQDLAYKSLIQLEPEN-----------PSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
.|++++|...++++++..|.+ +.+|..++.+|...|++++|..++++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 999999999999999988776 78899999999999999999998764
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=6.6e-16 Score=161.06 Aligned_cols=381 Identities=11% Similarity=0.091 Sum_probs=293.2
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCC-C-----CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQH-K-----DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLA 125 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 125 (547)
..+|.-....+++|...|.+.+|+++++++.- | +....+.|+.+..+. +..+..+..+..... ...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 34566667888999999999999999998852 2 346677788777777 667777776665422 134
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchh
Q 044812 126 TISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205 (547)
Q Consensus 126 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 205 (547)
-+...+...|.+++|..+|++.. -.....+.+ +-..|++++|.++.++... ..+|..+..++...|++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHH
Confidence 47788889999999999998852 122222333 2378999999999998744 5678899999999999999
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHH
Q 044812 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIR 285 (547)
Q Consensus 206 a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 285 (547)
|.+.|.+. .|...|..++.++.+.|++++|++.|... .+.. ++....+.++.+|++.++++....+. +
T Consensus 1124 ---AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mA-rk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 ---AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA-RKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred ---HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 55555443 67888999999999999999999999877 4433 44333445888999998888644443 1
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044812 286 KELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365 (547)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 365 (547)
.++...+..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 445567778999999999999999999875 37999999999999999999999976 356899999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--C
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH--G 441 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--~ 441 (547)
-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +..| ....|+.|...+++. +
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 99999999999998865532 346677789999999999999999999876 4444 344676676666653 4
Q ss_pred CHHHHHHHHHHHHhhCC-----CCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 442 NSEMQDLAYKSLIQLEP-----ENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 442 ~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
+..++.+.|..-....| .+...|..++..|.+.|+++.|..+
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 56666666665555444 5677899999999999999999853
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=5.3e-18 Score=162.15 Aligned_cols=262 Identities=9% Similarity=-0.014 Sum_probs=209.8
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...|..+...+.+.|++++|+..|+++ ... .+.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAA-ILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHH-HHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4556888888899999999999999988 332 23466788888889999999999999999988875 45677888999
Q ss_pred HHHHhcCCHHHHHHHHhcC-CCCCC-----------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 044812 300 DMYSKCGSLDCARRVFEDS-SFNKD-----------AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-PDIITIVGVL 366 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~-~~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~ 366 (547)
.+|...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999762 11121 223445678899999999999999999986422 1578899999
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 444 (547)
..+...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++ ...| +..+|..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998752 346889999999999999999999999987 3345 4779999999999999999
Q ss_pred HHHHHHHHHHhhCCC------------CCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 445 MQDLAYKSLIQLEPE------------NPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
+|...++++++..|. +..+|..++.++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998765 367899999999999999998887764
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.2e-16 Score=146.53 Aligned_cols=246 Identities=11% Similarity=0.029 Sum_probs=193.8
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCC-chhHHHHHHHH
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH-DVSLCNALIDM 301 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 301 (547)
....+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.|.+.++.+...+..| +...+..+..+
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~ 110 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 445567888888888888875532 245666777788888888888888888888888776434 56667778899
Q ss_pred HHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCcHHHH
Q 044812 302 YSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITI---VGVLSACGRSGLINEG 378 (547)
Q Consensus 302 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~l~~~~~~~g~~~~a 378 (547)
+...|++++|++.+++ ..+...+..++..|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|
T Consensus 111 ~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA 185 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDA 185 (291)
T ss_dssp HHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHH
Confidence 9999999999999998 4577789999999999999999999999999863 553211 2233445566999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH-HHHHHHHHHh
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEM-QDLAYKSLIQ 455 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 455 (547)
..+|+++.+.. +.+...++.+..++.+.|++++|...|++. ...| +..++..++..+...|+..+ +.++++++++
T Consensus 186 ~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 186 YYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999998763 558889999999999999999999999986 3445 67789999999999999875 6789999999
Q ss_pred hCCCCCchHHHHHHHHHcCCCHHHHHHHH
Q 044812 456 LEPENPSNYVSLSNLYASSRRWDAVAELR 484 (547)
Q Consensus 456 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (547)
.+|+++.+. +...+.+.++++..-|
T Consensus 264 ~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 264 AHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred hCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 999987544 4556666666665543
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=7.1e-15 Score=153.44 Aligned_cols=420 Identities=12% Similarity=0.097 Sum_probs=301.3
Q ss_pred cCCcchHHHHHHHHHhccCchHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHH
Q 044812 17 NYTSATVQHFLQVSATHRSLKLTKQSHSQILSLGH--ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLIN 94 (547)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~ 94 (547)
..++.........|...|.+.+|.++++.+.-.+- .-+....+.|+....+. +..+..+..+....-+ ...+..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~ 1057 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIAN 1057 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHH
Confidence 34455577888888899999999999999984421 13456677777666665 5555665555554322 455777
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 044812 95 GYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSE 174 (547)
Q Consensus 95 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 174 (547)
.+...|.+++|..+|++... .....+.++ ...+++++|.++.++. -+..+|..+..++.+.|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 88889999999999998631 112223332 2677888888888754 256788899999999999999
Q ss_pred HHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCC
Q 044812 175 CLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIE 254 (547)
Q Consensus 175 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 254 (547)
|+..|.+. .|...|..++.++.+.|+++++.+.+..-.... ++....+.++.+|.+.+++++...+. -.
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~rleele~fI--------~~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTNRLAELEEFI--------NG 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH--------hC
Confidence 99999664 667778889999999999998544444433333 33333445889999998888543332 13
Q ss_pred CChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 044812 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGY 334 (547)
Q Consensus 255 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~ 334 (547)
++...+..+...|...|++++|..+|..+ ..|..+..+|.+.|+++.|.+.+++.+ +..+|..+-.+|
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~---n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFAC 1260 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence 45566777889999999999999999875 378899999999999999999998765 557888888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhc--CCH
Q 044812 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRA--GQL 411 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--g~~ 411 (547)
...|++..|...... +..+...+..++..|.+.|.+++|+.+++... +..+ ....|+-+..+|.+. ++.
T Consensus 1261 ve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred hhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHH
Confidence 888988888876654 33356677788889999999999999998776 3343 445666666666654 466
Q ss_pred HHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------CCCCCchHHHHHHHHH
Q 044812 412 DRALDFIKTM-PVEP------SPSIWGALVSASVMHGNSEMQDLAYKSLIQL------------EPENPSNYVSLSNLYA 472 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~l~~~~~ 472 (547)
.++.++|..- .+.| +...|..++..|.+.|+++.|....-+-... .+.|+..|...+..|.
T Consensus 1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH
Confidence 6666666543 3333 4667888999999999999888332222111 3667778887777777
Q ss_pred cCC---------------CHHHHHHHHH
Q 044812 473 SSR---------------RWDAVAELRT 485 (547)
Q Consensus 473 ~~g---------------~~~~A~~~~~ 485 (547)
..+ +.+.+.+++.
T Consensus 1413 ~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1413 EFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 777 7777777776
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=3.3e-17 Score=156.75 Aligned_cols=297 Identities=11% Similarity=0.043 Sum_probs=151.7
Q ss_pred CChhHHHH-HHHHhhhCCC---CCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 044812 100 HGHNEALE-LFSNMYYSNV---SPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSEC 175 (547)
Q Consensus 100 ~~~~~A~~-~~~~m~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 175 (547)
|++++|++ .|++...... ..+...+..+...+...|++++|...++.+++.. +.+..++..+..++.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 55666666 5554443211 1123445566666666666666666666666553 33555666666677777777777
Q ss_pred HHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC
Q 044812 176 LNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP 255 (547)
Q Consensus 176 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p 255 (547)
...|+++.+.+ +.+..++..+...+...|++++|+..++++ ... .|
T Consensus 118 ~~~~~~al~~~-------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--~~ 163 (368)
T 1fch_A 118 ISALRRCLELK-------------------------------PDNQTALMALAVSFTNESLQRQACEILRDW-LRY--TP 163 (368)
T ss_dssp HHHHHHHHHHC-------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHT--ST
T ss_pred HHHHHHHHhcC-------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh--Cc
Confidence 66666542211 234556677777777777777777777776 332 22
Q ss_pred ChH-HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC---ChhhHHHH
Q 044812 256 NKV-SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK---DAITWSSI 330 (547)
Q Consensus 256 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l 330 (547)
+.. .+..+ +.... ...+ ...+..+...+ ..|++++|...|++. ...| +...+..+
T Consensus 164 ~~~~~~~~~-------~~~~~-----------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 164 AYAHLVTPA-------EEGAG-----------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred CcHHHHHHH-------HHHhh-----------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 211 11000 00000 0000 00011112222 455555555555441 1112 34555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC
Q 044812 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410 (547)
Q Consensus 331 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 410 (547)
...|...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|+
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCC
Confidence 666666666666666666655542 2234555666666666666666666666655431 2245556666666666666
Q ss_pred HHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 411 LDRALDFIKTM-PVEP------------SPSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 411 ~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
+++|...|+++ ...| ...+|..+..++...|+.++|..++++.+
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 66666666554 1111 14567777777777777777776666543
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=7.8e-16 Score=152.56 Aligned_cols=368 Identities=10% Similarity=-0.005 Sum_probs=186.9
Q ss_pred CCcchHHHHHHHHccCCCcHHHHHHHHHHHHh-----C---CCCchhHHHHHHHHHHhcCChHHHHHHhccCCC------
Q 044812 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKI-----G---FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ------ 184 (547)
Q Consensus 119 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 184 (547)
.....|+.+...+...|++++|++.|++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556777777777888888888887776543 1 122356788899999999999999888876431
Q ss_pred -C----ChhhHHHHHHHHHc--CCCchhHHHHHHHHhhcCCCChhhHHHHHHH---HHHCCCHHHHHHHHHHchhcCCCC
Q 044812 185 -R----NVGSWNVRISGHAS--SGDFSLVVRSRRVFDQMKRRNVYAWTAMING---YVQNGDLDEALVLFLEMQLKDRIE 254 (547)
Q Consensus 185 -~----~~~~~~~li~~~~~--~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~~~~ 254 (547)
+ ...++..+..++.. .+++++|....+-.-.+.+.+...+..+..+ +...++.++|++.+++. .+ +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a-l~--l~ 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA-IR--LN 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH-HH--HC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH-hh--cC
Confidence 1 12233333333333 3345553333222222333344444444433 33455666666666655 22 22
Q ss_pred C-ChHHHHhHHHHh----hccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC-ChhhH
Q 044812 255 P-NKVSLVSVLPTC----SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK-DAITW 327 (547)
Q Consensus 255 p-~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 327 (547)
| +...+..+...+ ...+++++|...++...... +.+..++..+...|...|++++|...+++. ...| +..++
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 3 233333333322 23445666666666666554 344556666666677777777777666651 1123 34455
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 044812 328 SSIVSGYGLH-------------------GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINT 388 (547)
Q Consensus 328 ~~li~~~~~~-------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 388 (547)
..+...|... +.++.|...+++..+.. +.+..++..+...+...|++++|.+.|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 5555555321 12344555555555432 123344555666666666666666666666543
Q ss_pred cCCCCch--hHHHHHHH-HhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 389 YRIKPTT--EICACVVD-MLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 389 ~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
...+.. ..+..+.. .+...|++++|+..|++. .+.|+...... ....+.+++++.++.+|.++.+|
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHH
Confidence 111111 11222222 223456666666666654 34444332221 12334455666667789999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceE
Q 044812 465 VSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWI 501 (547)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 501 (547)
..|+.+|...|++++|++.+++..+.+-..+...+|+
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999999988765544444553
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=4.8e-15 Score=148.98 Aligned_cols=418 Identities=9% Similarity=0.011 Sum_probs=282.1
Q ss_pred cccccccCCcc-hHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--CCcc
Q 044812 11 ALVTSRNYTSA-TVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--KDVY 87 (547)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~ 87 (547)
+...+.+|... ....++.. ...|+++.|..+++.+++.. +.+...|..++..+.+.|++++|..+|++... |++.
T Consensus 3 e~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 3 EKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp HHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred hhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 33444455333 45666664 66899999999999999874 66788999999999999999999999999865 7777
Q ss_pred hHHHHHHHH-HhcCChhHHHH----HHHHhhhC-CCCCC-cchHHHHHHHHcc---------CCCcHHHHHHHHHHHHhC
Q 044812 88 LYNSLINGY-VKNHGHNEALE----LFSNMYYS-NVSPD-DFTLATISKLSGE---------IKDLNVGMLIHGLSIKIG 151 (547)
Q Consensus 88 ~~~~ll~~~-~~~~~~~~A~~----~~~~m~~~-~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~g 151 (547)
.|...+... ...|+++.|.+ +|+..... |..|+ ...|...+..... .|+++.|..+|+..++..
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P 160 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP 160 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch
Confidence 777776533 35677777665 77776543 55544 4556666665543 688999999999998731
Q ss_pred CCCchhHHHHHHHHHHh-------------cCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhc--
Q 044812 152 FVVDVILANSLMSMYVK-------------CGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM-- 216 (547)
Q Consensus 152 ~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~-- 216 (547)
.......|......... .++++.|..+++++. ...+.++..
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~------------------------~~~~~l~~~~~ 216 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYE------------------------TVMKGLDRNAP 216 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHH------------------------HHHHHCCSSSC
T ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHH------------------------HHHHHhccccc
Confidence 11112333332221111 122223322222100 000111110
Q ss_pred -CCCC--------hhhHHHHHHHHHHC----CCH----HHHHHHHHHchhcCCCCCChHHHHhHHHHhhc-------cCC
Q 044812 217 -KRRN--------VYAWTAMINGYVQN----GDL----DEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS-------LIG 272 (547)
Q Consensus 217 -~~~~--------~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-------~~~ 272 (547)
..|+ ...|...+...... ++. ++|..+|++. ... .+-+...|......+.+ .|+
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a-l~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC-LLV-LGHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH-HHH-HTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHhchhhhhccc
Confidence 0111 23454444333222 232 4777788877 332 23456667777766664 688
Q ss_pred ch-------hHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCC-h-hhHHHHHHHHHhcCChHH
Q 044812 273 LS-------GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNKD-A-ITWSSIVSGYGLHGKGHE 342 (547)
Q Consensus 273 ~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~-~~~~~li~~~~~~~~~~~ 342 (547)
++ .|..+++...+.-.+.+...|..++..+.+.|++++|..+|++ +...|+ . ..|..++..+.+.|++++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH
Confidence 77 8888888887633355678889999999999999999999987 333454 2 478888888889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 343 AVLLYNKMVCLGSKPDIITIVGVLSA-CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 343 a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
|..+|++..+.. +.+...|...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.
T Consensus 375 A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 375 GRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 999999998852 2223333332222 335899999999999998763 336788999999999999999999999987
Q ss_pred ----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 422 ----PVEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 422 ----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
+..|+ ...|...+......|+.+.+..+++++.+..|.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22332 458888888888999999999999999998773
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=2.2e-16 Score=148.27 Aligned_cols=262 Identities=10% Similarity=-0.040 Sum_probs=213.0
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...+..+...+...|++++|+.+|+++ .+. .+.+...+..+..++...|++++|...++.+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAV-CQA-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 4456677888888999999999999888 332 23366777888888899999999999999988875 55677888899
Q ss_pred HHHHhcCCHHHHHHHHhcC-CCCCC-hhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 044812 300 DMYSKCGSLDCARRVFEDS-SFNKD-AITWSSI--------------VS-GYGLHGKGHEAVLLYNKMVCLGSKPDIITI 362 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 362 (547)
..+...|++++|...+++. ...|+ ...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999998762 11232 2233332 22 3778899999999999998864 3367889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 044812 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH 440 (547)
Q Consensus 363 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 440 (547)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ...| +..++..+..++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998652 346788999999999999999999999987 3334 577899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC------------CCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 441 GNSEMQDLAYKSLIQLEPE------------NPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
|++++|.+.++++.+..|. ++..+..++.++.+.|++++|..++++.
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999888 6889999999999999999999998754
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=5.7e-17 Score=154.91 Aligned_cols=293 Identities=11% Similarity=-0.001 Sum_probs=173.6
Q ss_pred CCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHH
Q 044812 69 GQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHG 145 (547)
Q Consensus 69 ~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 145 (547)
+....+...+..... .+...|..+...+.+.|++++|+..|+.+.+... .+..++..+..++...|++++|...++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344445554444432 3556788999999999999999999999988642 367789999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChh---hHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChh
Q 044812 146 LSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG---SWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVY 222 (547)
Q Consensus 146 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~ 222 (547)
++++.. +.+..++..+..+|...|++++|...|+++.+.+.. .+..+ .....
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~------------------------~~~~~ 178 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNK------------------------KGSPG 178 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------------------
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhh------------------------ccchH
Confidence 999875 456888999999999999999999999886542211 00000 01123
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMY 302 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (547)
.+..+...+...|++++|+..|+++.......++..++..+...+...|++++|...++.+.+..
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 243 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------------- 243 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------
Confidence 34455677777888888888887773221111133344444444444444444444444444332
Q ss_pred HhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044812 303 SKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382 (547)
Q Consensus 303 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 382 (547)
+.+..+|+.+...|...|++++|...|+++.+.. +.+..++..+..++...|++++|...|
T Consensus 244 ------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 244 ------------------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2334455556666666666666666666655541 123555556666666666666666666
Q ss_pred HHHHHhcCC----------CCchhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 383 NSVINTYRI----------KPTTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 383 ~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
+++.+...- ..+..+|..+..++...|+.+.+....++-
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 655543100 012556777777777777777777766553
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=2.5e-16 Score=144.49 Aligned_cols=248 Identities=8% Similarity=0.052 Sum_probs=202.9
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCCh--HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNK--VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (547)
++.....|++..|+..++.. .. ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~-~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRV-KP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHS-CC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhc-cc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 45667889999999999876 33 34443 3556678999999999999986654 2466778889999999999
Q ss_pred CCHHHHHHHHhcC---CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 044812 306 GSLDCARRVFEDS---SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEI 381 (547)
Q Consensus 306 g~~~~A~~~~~~~---~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 381 (547)
|+.++|++.++++ +..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999873 2235 455677777999999999999999987 45788899999999999999999999
Q ss_pred HHHHHHhcCCCCchhHH---HHHHHHhHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 382 YNSVINTYRIKPTTEIC---ACVVDMLGRAGQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 382 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
|+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999876 3543211 22334445569999999999998 23457789999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCCHHH-HHHHHHHHHhCC
Q 044812 457 EPENPSNYVSLSNLYASSRRWDA-VAELRTMMKDRG 491 (547)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 491 (547)
+|.++.++..++.++...|+.++ +.++++++.+..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999976 578999887654
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.3e-14 Score=143.79 Aligned_cols=383 Identities=8% Similarity=-0.069 Sum_probs=195.8
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHhccCC-----------CC-CcchHHHHHHHHHhcCChhHHHHHHHHhhhC-----
Q 044812 53 SNPFVSTKLITAYALCGQPTQSQLVFNSIQ-----------HK-DVYLYNSLINGYVKNHGHNEALELFSNMYYS----- 115 (547)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----- 115 (547)
.....||.|...+...|++++|++.|++.. .| ...+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345677888888888888888888776642 12 2456777888888888888888888776542
Q ss_pred C-CCC-CcchHHHHHHHHcc--CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH---HhcCChHHHHHHhccCCC---C
Q 044812 116 N-VSP-DDFTLATISKLSGE--IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMY---VKCGKFSECLNLFDEMPQ---R 185 (547)
Q Consensus 116 ~-~~p-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~---~ 185 (547)
+ ..+ ...++.....++.. .+++++|...|++.++.. +-+...+..+..++ ...++.++|++.+++..+ .
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 011 12344444444433 346778888888777764 22444444444443 334555666666655432 2
Q ss_pred ChhhHHHHHHHHHc----CCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC-hHHH
Q 044812 186 NVGSWNVRISGHAS----SGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN-KVSL 260 (547)
Q Consensus 186 ~~~~~~~li~~~~~----~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~~~ 260 (547)
+...+..+...+.. .|+.+++....+......+.+...+..+...|...|++++|+..+++. .+ ..|+ ..++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~--~~p~~~~~~ 284 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA-LE--YIPNNAYLH 284 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HSTTCHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHH-HH--hCCChHHHH
Confidence 23333333333322 233444332222222333445555566666666666666666666655 22 1222 2333
Q ss_pred HhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhHHHHHHHHHhc
Q 044812 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITWSSIVSGYGLH 337 (547)
Q Consensus 261 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~li~~~~~~ 337 (547)
..+..++...+.. ..... ...........+..+.|...+++ .. +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 3333222111000 00000 00000001112335667777765 23 44566788899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHH
Q 044812 338 GKGHEAVLLYNKMVCLGSKPDII--TIVGVLS-ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (547)
|++++|...|++..+....|... .+..+.. .....|+.++|+..|++..+. .|+....... ...+
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l 415 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKL 415 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHH
Confidence 99999999999998865443321 2223322 245789999999999988753 4543322222 2233
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 415 LDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 415 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
..++++. ... .+..+|..++.+|...|++++|++.|+++++.+|.+|.+..-++
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3344433 222 35678999999999999999999999999999988887766554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=3.9e-15 Score=139.64 Aligned_cols=227 Identities=11% Similarity=0.042 Sum_probs=106.6
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCc
Q 044812 124 LATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDF 203 (547)
Q Consensus 124 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 203 (547)
+..+...+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------ 84 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML------------------ 84 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Confidence 3344444444455555555555444432 224444555555555555555555555443211
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh-HHHHhH--------------HH-Hh
Q 044812 204 SLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK-VSLVSV--------------LP-TC 267 (547)
Q Consensus 204 ~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~l--------------l~-~~ 267 (547)
.+.+...+..+...+...|++++|++.++++ ... .|+. ..+..+ .. .+
T Consensus 85 -------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 85 -------------DPKDIAVHAALAVSHTNEHNANAALASLRAW-LLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHT--STTTTTC--------------------CCT
T ss_pred -------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHH
Confidence 1124445556666666666666666666665 321 1211 111111 11 24
Q ss_pred hccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHH
Q 044812 268 SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVL 345 (547)
Q Consensus 268 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~ 345 (547)
...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++. .. +.+...+..+...+...|++++|..
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555555555443 224444555555555555555555555431 11 2233444555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044812 346 LYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 346 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
.++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 228 ~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 228 AYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555554431 12344444445555555555555555554443
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=3.2e-17 Score=165.67 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=103.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDS------SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV 363 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 363 (547)
.-..+|+++|++||+.|++++|.++|++| ++.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34567888888888888888888888652 467899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCc-HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 044812 364 GVLSACGRSGL-INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 364 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
++|.++++.|+ .++|.++|++|.++ |+.||..+|++++.+..+.+-++.+.++
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999888887 47788899999877 8899999998888777665444444333
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=167.51 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=125.3
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHhccCC-------CCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHH
Q 044812 54 NPFVSTKLITAYALCGQPTQSQLVFNSIQ-------HKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLAT 126 (547)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 126 (547)
-..+||+||++|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35689999999999999999999997753 58999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-----ChhhHHHHHHHHHcC
Q 044812 127 ISKLSGEIKDL-NVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQR-----NVGSWNVRISGHASS 200 (547)
Q Consensus 127 l~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~ 200 (547)
+|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+.-+ ...+...|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 789999999999999999999999998888776666666665555431 122334444555544
Q ss_pred C
Q 044812 201 G 201 (547)
Q Consensus 201 g 201 (547)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=9.7e-15 Score=127.87 Aligned_cols=196 Identities=15% Similarity=0.079 Sum_probs=155.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044812 289 NHDVSLCNALIDMYSKCGSLDCARRVFED-SSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVL 366 (547)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 366 (547)
+++...+..+...+.+.|++++|...|++ +... .+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 55677788888899999999999999986 2333 456778888999999999999999999998863 22567888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 044812 367 SACGRS-----------GLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGAL 433 (547)
Q Consensus 367 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 433 (547)
..+... |++++|+..+++..+. .| +...+..+...+...|++++|+..|++. ....+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999999865 34 6788889999999999999999999987 212778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
..++...|++++|+..|+++++.+|.++..+..++.++.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998754
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.3e-15 Score=132.62 Aligned_cols=221 Identities=11% Similarity=0.063 Sum_probs=155.9
Q ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044812 221 VYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300 (547)
Q Consensus 221 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 300 (547)
...|..+...+...|++++|+..|++. .+.. .+..++..+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a------------------------------------~~~~--~~~~~~~~~~~ 46 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKA------------------------------------WELH--KDITYLNNRAA 46 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------------------HHHS--CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH------------------------------------HHhh--ccHHHHHHHHH
Confidence 345556666666666666666666665 3333 33444555555
Q ss_pred HHHhcCCHHHHHHHHhcC-CC----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 301 MYSKCGSLDCARRVFEDS-SF----NKD----AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
++...|++++|...+++. .. .++ ...|..+...|...|++++|...|++..+. .|+. ..+..
T Consensus 47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~ 117 (258)
T 3uq3_A 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTK 117 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHH
Confidence 555555555555555431 00 112 356777777778888888888888887774 3443 23455
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
.|++++|...++.+... .+.+...+..+...+...|++++|...+++. .. +.+..+|..+..++...|++++|+..
T Consensus 118 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888887653 1235667778888888888888888888876 22 23577888889999999999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 450 YKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
++++++..|.++..+..++.++...|++++|.+.+++..+.
T Consensus 196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999988899999999999999999999999887654
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.1e-14 Score=131.50 Aligned_cols=239 Identities=7% Similarity=-0.005 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCC--CCCChHHHHhHHH
Q 044812 188 GSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDR--IEPNKVSLVSVLP 265 (547)
Q Consensus 188 ~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~p~~~~~~~ll~ 265 (547)
..|..+...+...|++++|....+-..... .+...|..+..++...|++++|+..+++. .... ..|+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~-------- 75 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDA-VEQGREMRADY-------- 75 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCCH--------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHH-HHhCcccccch--------
Confidence 467788899999999999655555444455 78889999999999999999999999987 3310 00110
Q ss_pred HhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCChHHHH
Q 044812 266 TCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDAITWSSIVSGYGLHGKGHEAV 344 (547)
Q Consensus 266 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~ 344 (547)
+....++..+..++...|++++|...|++. ...|+. ..+...|++++|.
T Consensus 76 -----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 76 -----------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHH
Confidence 001345666677777777777777777652 223432 3455667788888
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-C
Q 044812 345 LLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-P 422 (547)
Q Consensus 345 ~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 422 (547)
..++++... .| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++. .
T Consensus 126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888774 34 45677778888888899999999999887652 336778888888999999999999998876 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHH
Q 044812 423 VEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE------PENPSNYVSLSNL 470 (547)
Q Consensus 423 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~ 470 (547)
..| +...|..+..++...|++++|...++++.+.. |.+...+..+..+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 334 57788899999999999999999999999887 7776666665543
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=8.6e-15 Score=143.30 Aligned_cols=373 Identities=10% Similarity=0.003 Sum_probs=213.3
Q ss_pred HHHHHHhcCCchhHHHHhccCCC-CCcchHHHHHHHHHhcCCh---hHHHHHHHHhhhCCCCCCcchHHHHHHHHccCC-
Q 044812 61 LITAYALCGQPTQSQLVFNSIQH-KDVYLYNSLINGYVKNHGH---NEALELFSNMYYSNVSPDDFTLATISKLSGEIK- 135 (547)
Q Consensus 61 l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~- 135 (547)
+...+.+.|++++|.+.|+...+ .+..++..|...+...|++ ++|...|+...+. ++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 44555666777777777766543 3444555555555556666 6666666666543 3344444444333332
Q ss_pred ----CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHH
Q 044812 136 ----DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211 (547)
Q Consensus 136 ----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~ 211 (547)
++++|..+|++..+.|. ...+..|...|...+..+.+ ..+.+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~-------------------------------~~a~~ 130 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPN-------------------------------VNAQQ 130 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTT-------------------------------CCHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCC-------------------------------HHHHH
Confidence 55666666666666552 22444555555544433222 11222
Q ss_pred HHhhcC-CCChhhHHHHHHHHHHCCCHHHHH----HHHHHchhcCCCCCChHHHHhHHHHhhccC---CchhHHHHHHHH
Q 044812 212 VFDQMK-RRNVYAWTAMINGYVQNGDLDEAL----VLFLEMQLKDRIEPNKVSLVSVLPTCSSLI---GLSGGKQIHGFA 283 (547)
Q Consensus 212 ~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~----~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~ 283 (547)
.+.... ..+...+..+...|...+.++++. .+++.. ...+...+..+...+...| +.++|...|+..
T Consensus 131 ~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a-----~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 131 QISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA-----LNTTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH-----TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 222221 123445556666666666443333 333333 1222236666666666677 777777777777
Q ss_pred HHcCCCCchhHHHHHHHHHHhc----CCHHHHHHHHhcCCCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCC
Q 044812 284 IRKELNHDVSLCNALIDMYSKC----GSLDCARRVFEDSSFNKDAITWSSIVSG-Y--GLHGKGHEAVLLYNKMVCLGSK 356 (547)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~ 356 (547)
.+.| +++...+..+..+|... +++++|..+|++.. +.+...+..+... | ...+++++|..+|++..+.|
T Consensus 206 a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 206 VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--
T ss_pred HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--
Confidence 7776 44455445677777554 68888998888766 5666777777776 4 46788999999999988876
Q ss_pred CCHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHHhCCCCCCH
Q 044812 357 PDIITIVGVLSACGRSG-----LINEGLEIYNSVINTYRIKPTTEICACVVDMLGR----AGQLDRALDFIKTMPVEPSP 427 (547)
Q Consensus 357 p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~ 427 (547)
+...+..|...|. .| ++++|...|++.. .-+...+..|...|.. ..++++|..+|++.....+.
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 5566666666665 44 8899999988775 2356666677777665 34899999999887333345
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH--HcCCCHHHHHHHHHHHHh
Q 044812 428 SIWGALVSASVM----HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY--ASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 428 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 489 (547)
.....|...|.. ..+..+|...|+++.+.+++. ....+..+. ...++.++|.++.++...
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 556667776663 458999999999998877544 333333333 334567778888777654
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=2.2e-14 Score=130.89 Aligned_cols=243 Identities=10% Similarity=-0.078 Sum_probs=189.6
Q ss_pred HHCCCHHHHHHHHHHchhcCCC-C--CChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044812 232 VQNGDLDEALVLFLEMQLKDRI-E--PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 232 ~~~~~~~~A~~~~~~m~~~~~~-~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 308 (547)
...|++++|+..|+++ .+... . .+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQI-LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHH-HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3457889999999988 44321 1 135678888888999999999999999988875 45678899999999999999
Q ss_pred HHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 309 DCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 309 ~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
++|...|++. .. +.+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999862 21 446778999999999999999999999999885 4554445555556677799999999998887
Q ss_pred HhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS-----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
... +++...+ .++..+...++.++|...+++. ...|. ..++..+..++...|++++|...++++++.+|.+
T Consensus 172 ~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 652 3444444 4677778888899999999886 33332 5688899999999999999999999999999877
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHH
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELR 484 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~ 484 (547)
.. ..+.++...|++++|++.+
T Consensus 249 ~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CH---HHHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHHhhHHHH
Confidence 44 3467788889999988776
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=3.3e-13 Score=132.09 Aligned_cols=312 Identities=11% Similarity=0.001 Sum_probs=163.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCc---hhHHHHhccCCCCCcchHHHHHHHHHhcC
Q 044812 24 QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP---TQSQLVFNSIQHKDVYLYNSLINGYVKNH 100 (547)
Q Consensus 24 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 100 (547)
..+...+...|++++|.+.++...+.| ++..+..|...|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 446778888999999999999999987 444555667777778888 99999999987777778888887666655
Q ss_pred -----ChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 101 -----GHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN---VGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 101 -----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
++++|+..|+...+.|. ...+..|...|...+..+ .+.+.+......| +......|...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 78899999999998763 346777777776655433 4455555555544 455667778888887744
Q ss_pred ----HHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhc---CCCChhhHHHHHHHHHHC----CCHHHHH
Q 044812 173 ----SECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQM---KRRNVYAWTAMINGYVQN----GDLDEAL 241 (547)
Q Consensus 173 ----~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~---~~~~~~~~~~li~~~~~~----~~~~~A~ 241 (547)
+.+..+++.....+...+..+...|...|......+|.+.|+.. ..++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 44444555555555545555555555555322223344444333 223333334444444333 4555666
Q ss_pred HHHHHchhcCCCCCChHHHHhHHHH-h--hccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-----CHHHHHH
Q 044812 242 VLFLEMQLKDRIEPNKVSLVSVLPT-C--SSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCG-----SLDCARR 313 (547)
Q Consensus 242 ~~~~~m~~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~ 313 (547)
++|++. . +-+...+..+... + ...+++++|...|++..+.| +...+..|..+|. .| ++++|..
T Consensus 238 ~~~~~a-a----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKI-A----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHH-G----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHH-c----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 666555 2 1222333333333 2 33555555555555555544 3344444444444 33 5555555
Q ss_pred HHhcCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 044812 314 VFEDSSFNKDAITWSSIVSGYGL----HGKGHEAVLLYNKMVCLG 354 (547)
Q Consensus 314 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g 354 (547)
.|++.- ..+...+..|...|.. ..++++|..+|++..+.|
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 555544 4444444444444443 225555555555555444
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=7.4e-14 Score=127.17 Aligned_cols=248 Identities=10% Similarity=-0.034 Sum_probs=154.6
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCc--hhHHHHHHH
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD--VSLCNALID 300 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 300 (547)
.+......+...|++++|+..|++. .+. .+.+...+..+..++...|++++|...++.+.+.+..++ ...|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~-l~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKL-EAK-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-HHT-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-HHh-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3445566666777777777777766 332 112333566666666677777777777776666321111 223666777
Q ss_pred HHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 301 MYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
++...|++++|...|++. .. +.+...|..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777652 11 3345567777777777777777777777776641 22455555555233334577777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHHcCCHHH
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDMLGRAGQ---LDRALDFIKTM----PVEPS------PSIWGALVSASVMHGNSEM 445 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~~~~~~ 445 (547)
...|+++.+.. +.+...+..+...+...|+ +++|...+++. ...|+ ..+|..+...|...|++++
T Consensus 162 ~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777776542 2235566666666666666 55566666554 11233 2467788888999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
|.+.++++++.+|.++.++..+.......+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999888887777665544
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.1e-12 Score=117.88 Aligned_cols=169 Identities=8% Similarity=-0.032 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSA 368 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~ 368 (547)
...+..+..+|...|++++|.+.+++. .. +.+...+..+...|...|++++|..+++++.+.+..| +...+..+...
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence 334444555555555555555555431 11 2234445555555555666666666665555422233 23445555555
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a 446 (547)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ... .+...+..+...+...|+.++|
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence 556666666666666555431 223445555555555555555555555554 222 2344555555555556666666
Q ss_pred HHHHHHHHhhCCCCCc
Q 044812 447 DLAYKSLIQLEPENPS 462 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~ 462 (547)
.+.++++.+..|.++.
T Consensus 229 ~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 229 ASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHCCCCHH
Confidence 6666666655555543
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=1.1e-12 Score=119.45 Aligned_cols=224 Identities=12% Similarity=0.018 Sum_probs=133.7
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+..++..+...+...|++++|+..|++. .+ +.+.. .+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a-~~---~~~~~-----------------------------------a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKA-CD---LKENS-----------------------------------GCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH---TTCHH-----------------------------------HHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHH-HH---CCCHH-----------------------------------HHHHHH
Confidence 4556666667777777777777777666 33 11223 334444
Q ss_pred HHHHh----cCCHHHHHHHHhcCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 300 DMYSK----CGSLDCARRVFEDSSFNKDAITWSSIVSGYGL----HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 300 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
..|.. .|++++|...|++.--..+...+..+...|.. .+++++|...|++..+.+ +...+..+...+..
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 44444 55555555555442101244455555555555 666666666666665543 44555555555555
Q ss_pred ----cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 044812 372 ----SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR----AGQLDRALDFIKTMPVEPSPSIWGALVSASVM---- 439 (547)
Q Consensus 372 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---- 439 (547)
.+++++|...|++..+. + +...+..+...|.. .+++++|...|++.....+...+..+...|..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 66666666666666543 2 34455555555655 66666666666655212345566666777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS----SRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 491 (547)
.+++++|...++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.|
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777777777777777655 4567777777777 777777777777776655
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=8.6e-13 Score=116.14 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=148.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
+...+..+...+...|++++|...|++. .. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4456667777777778888888777652 11 3446677777788888888888888888877753 3356677777888
Q ss_pred Hhcc-CcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 044812 369 CGRS-GLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 369 ~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 444 (547)
+... |++++|...++++.+. +..| +...+..+...+...|++++|...++++ ...| +...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 8888888888887762 2333 3567777888888888888888888776 2233 4667888888888888888
Q ss_pred HHHHHHHHHHhhCC-CCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 445 MQDLAYKSLIQLEP-ENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 445 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+|...++++.+..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 88888888888888888888888888887654
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=1.6e-13 Score=122.55 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044812 294 LCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR 371 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 371 (547)
.+..+...+...|++++|...+++. .. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3333444444444444444444331 00 2233344444444555555555555555544432 1233444444445555
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
.|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++ ... .+..++..+..++...|++++|...
T Consensus 138 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 215 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215 (243)
T ss_dssp TSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 555555555555544321 123444444444555555555555555443 111 2334455555555555555555555
Q ss_pred HHHHHhhCCCCCchHHHHH
Q 044812 450 YKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~ 468 (547)
++++.+..|.++..+..+.
T Consensus 216 ~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 216 LDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHccCcchHHHHHHHH
Confidence 5555555555544444433
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=5.6e-13 Score=119.76 Aligned_cols=198 Identities=10% Similarity=-0.007 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 369 (547)
...+..+...+...|++++|...|++. .. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 456778888888999999999988762 11 4467789999999999999999999999998863 33678888999999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 446 (547)
...|++++|.+.++++.+. +..| +...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999762 3445 5678888999999999999999999987 2234 577899999999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 447 DLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...++++.+..|.++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997654
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1.6e-12 Score=118.38 Aligned_cols=226 Identities=13% Similarity=0.029 Sum_probs=155.2
Q ss_pred ChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC-CCChhhHHHHHHHHHH----CCCHHHHHHHHHHchhcCCCCCChHHH
Q 044812 186 NVGSWNVRISGHASSGDFSLVVRSRRVFDQMK-RRNVYAWTAMINGYVQ----NGDLDEALVLFLEMQLKDRIEPNKVSL 260 (547)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~~~ 260 (547)
+...+..+...+...|++++ |.+.|++.. ..+..++..+...|.. .+++++|+..|++. .+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~---A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a-~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQ---AKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA-CDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH-HHCC---CHHHH
Confidence 45577788889999999999 555555543 3466788889999999 99999999999988 4432 33344
Q ss_pred HhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCCCCChhhHHHHHHHHHh
Q 044812 261 VSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSK----CGSLDCARRVFEDSSFNKDAITWSSIVSGYGL 336 (547)
Q Consensus 261 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 336 (547)
.. +...|.. .+++++|...|++.--..+...+..+...|..
T Consensus 78 ~~-----------------------------------lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 78 HL-----------------------------------LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHD 122 (273)
T ss_dssp HH-----------------------------------HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH-----------------------------------HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHc
Confidence 44 4444444 55555555555442101244555666666666
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh-
Q 044812 337 ----HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR----SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR- 407 (547)
Q Consensus 337 ----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 407 (547)
.+++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+...|..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcC
Confidence 677777777777777654 44555666666665 77788888888777654 2 45566677777777
Q ss_pred ---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC
Q 044812 408 ---AGQLDRALDFIKTMPVEPSPSIWGALVSASVM----HGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 408 ---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+++++|...+++.....+...+..+...|.. .+++++|.+.++++.+.+|++
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 78888888888776212236677778888888 889999999999998888754
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=2.7e-12 Score=112.90 Aligned_cols=209 Identities=12% Similarity=0.015 Sum_probs=149.5
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...|..+...+...|++++|++.|+++ .+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~------------------------------------~~~~-~~~~~~~~~l~ 49 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDA------------------------------------LKSD-PKNELAWLVRA 49 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------------------HHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHH------------------------------------HHhC-ccchHHHHHHH
Confidence 4455666666666666666666666665 2222 22344566666
Q ss_pred HHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcH
Q 044812 300 DMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLH-GKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLI 375 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 375 (547)
.++...|++++|...+++. .. +.+...+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 6677777777777777652 11 34556777788888888 888888888888877333343 56777788888888899
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044812 376 NEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE--PSPSIWGALVSASVMHGNSEMQDLAYKS 452 (547)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 452 (547)
++|...++++.+.. +.+...+..+...+...|++++|...++++ ... .+...+..+...+...|+.+.+..+++.
T Consensus 130 ~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 130 GLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 99988888887642 335777888888888999999999988876 222 4566777778888899999999999999
Q ss_pred HHhhCCCCCchHHHH
Q 044812 453 LIQLEPENPSNYVSL 467 (547)
Q Consensus 453 ~~~~~~~~~~~~~~l 467 (547)
+.+..|.++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 998999887665443
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=3.1e-13 Score=120.63 Aligned_cols=199 Identities=12% Similarity=0.126 Sum_probs=156.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 367 (547)
.....+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34566777888899999999999999873 22 3467788889999999999999999999998863 336788889999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEM 445 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~ 445 (547)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++ .. ..+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998752 346788889999999999999999999987 22 3467789999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 446 QDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 446 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
|+..++++.+..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987654
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=1e-12 Score=114.99 Aligned_cols=195 Identities=16% Similarity=0.074 Sum_probs=105.2
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHH
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNAL 298 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 298 (547)
++...+..+...+.+.|++++|+..|++. .+. -+.+...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERA-LKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHH-HTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 35566777778888888888888888877 332 22344556666666666777777777776666654 3345556666
Q ss_pred HHHHHhc-----------CCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044812 299 IDMYSKC-----------GSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGV 365 (547)
Q Consensus 299 ~~~~~~~-----------g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 365 (547)
..++... |++++|+..|++. ...| +...|..+...|...|++++|...|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 6666666 5555555555541 1122 34445555555555555555555555555544 445555555
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHh
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKT 420 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 420 (547)
..++...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555555431 22344455555555555555555555544
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=8.5e-13 Score=125.11 Aligned_cols=246 Identities=9% Similarity=-0.016 Sum_probs=193.5
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCC-ChHHHHhHHHHhhccCC-chhHHHHHHHHHHcCCCCchhHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEP-NKVSLVSVLPTCSSLIG-LSGGKQIHGFAIRKELNHDVSLCNA 297 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 297 (547)
+...|..+...+.+.|++++|+..|++. .. +.| +...|..+..++...|+ +++|...++++.+.. +-+...|..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~a-l~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDA-IE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHH-HH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 4467788888888999999999999888 44 344 45667788888888886 899999988888876 556778888
Q ss_pred HHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCc
Q 044812 298 LIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGR-SGL 374 (547)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~ 374 (547)
+..++...|++++|+..|++. .+ ..+...|..+..++...|++++|+..++++++... -+...|+.+..++.. .|.
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 888999999999999998862 22 45677888899999999999999999999988632 257788888888887 565
Q ss_pred HHHH-----HHHHHHHHHhcCCCC-chhHHHHHHHHhHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC----
Q 044812 375 INEG-----LEIYNSVINTYRIKP-TTEICACVVDMLGRAG--QLDRALDFIKTMPVEP-SPSIWGALVSASVMHG---- 441 (547)
Q Consensus 375 ~~~a-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~---- 441 (547)
.++| +..+++.++. .| +...|..+...+...| ++++|.+.+.++...| +...+..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5666 4778887764 44 6778888888888888 6889998888774445 4568888888888764
Q ss_pred -----CHHHHHHHHHHH-HhhCCCCCchHHHHHHHHHc
Q 044812 442 -----NSEMQDLAYKSL-IQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 442 -----~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 473 (547)
..++|+++++++ .+.+|.....|..++..+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 88999888888888777654
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=6.6e-13 Score=128.51 Aligned_cols=298 Identities=15% Similarity=0.117 Sum_probs=192.6
Q ss_pred chHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHH
Q 044812 122 FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD----VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGH 197 (547)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 197 (547)
..+......+...|++++|...++.+++.+.. + ..++..+..+|...|++++|...+++
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------------- 72 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHH---------------- 72 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------------
Confidence 34455566667777777777777777766422 2 34677788888888888888888876
Q ss_pred HcCCCchhHHHHHHHHhhcCCC--ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchh
Q 044812 198 ASSGDFSLVVRSRRVFDQMKRR--NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275 (547)
Q Consensus 198 ~~~g~~~~a~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 275 (547)
+.++......+ ...++..+...+...|++++|+..+++......-.++..
T Consensus 73 -----------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------- 124 (406)
T 3sf4_A 73 -----------DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV----------------- 124 (406)
T ss_dssp -----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-----------------
T ss_pred -----------HHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-----------------
Confidence 33333333221 345678888899999999999999887721110001100
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--------------------HHHHHHHHhc-------CCCCC-ChhhH
Q 044812 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGS--------------------LDCARRVFED-------SSFNK-DAITW 327 (547)
Q Consensus 276 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~-------~~~~~-~~~~~ 327 (547)
....++..+...|...|+ +++|...+++ .+..+ ....+
T Consensus 125 --------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 190 (406)
T 3sf4_A 125 --------------GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAF 190 (406)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------chHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 012234444444444454 5555544432 22111 12356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHH
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPD----IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEIC 398 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~ 398 (547)
..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++
T Consensus 191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 270 (406)
T 3sf4_A 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270 (406)
T ss_dssp HHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHH
Confidence 7777778888888888888877764310 111 236777778888888888888888877643211111 4567
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCCchH
Q 044812 399 ACVVDMLGRAGQLDRALDFIKTM----PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLE------PENPSNY 464 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~ 464 (547)
..+...|...|++++|...+++. +..++ ..++..+...+...|++++|...++++.+.. +....++
T Consensus 271 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 350 (406)
T 3sf4_A 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTAR 350 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHH
Confidence 78888889999999998888776 11122 4578888999999999999999999998763 2234567
Q ss_pred HHHHHHHHcCCCHH
Q 044812 465 VSLSNLYASSRRWD 478 (547)
Q Consensus 465 ~~l~~~~~~~g~~~ 478 (547)
..++.++...|+..
T Consensus 351 ~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 351 LNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhHhH
Confidence 78888888877653
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.7e-13 Score=132.99 Aligned_cols=265 Identities=12% Similarity=0.016 Sum_probs=201.3
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh-----HHHHhHHHHhhccCCchhHHHHHHHHHHc----C-CCCc
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK-----VSLVSVLPTCSSLIGLSGGKQIHGFAIRK----E-LNHD 291 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~ 291 (547)
..+..+...+...|++++|+..|+++ ... .|+. ..+..+...+...|+++.|...+++..+. + .+..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~a-l~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAA-IQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHH-HHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34556677888999999999999888 442 3332 46777888888999999999988887754 1 1224
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-------CCCC-ChhhHHHHHHHHHhcCC-----------------hHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-------SFNK-DAITWSSIVSGYGLHGK-----------------GHEAVLL 346 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~li~~~~~~~~-----------------~~~a~~~ 346 (547)
..++..+...|...|++++|...+++. +-.+ ....+..+...|...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 567788899999999999999988752 2011 23467888889999999 9999998
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHhHhcCCHHHHHHH
Q 044812 347 YNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 347 ~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
+++..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8886542 2122 2357778888899999999999999988764211112 23778889999999999999999
Q ss_pred HHhC-C---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHcCCCHHHHHHH
Q 044812 418 IKTM-P---VEP----SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------PSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 418 ~~~~-~---~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
+++. . ... ...++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9876 1 111 24578889999999999999999999998874322 34788999999999999999999
Q ss_pred HHHHHh
Q 044812 484 RTMMKD 489 (547)
Q Consensus 484 ~~~m~~ 489 (547)
+++..+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=1.6e-12 Score=118.32 Aligned_cols=229 Identities=10% Similarity=-0.031 Sum_probs=185.9
Q ss_pred HHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCCh----hhHHHHHH
Q 044812 258 VSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDA----ITWSSIVS 332 (547)
Q Consensus 258 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~li~ 332 (547)
..+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...+++. ...++. ..|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778889999999999999999875 445668888999999999999999999862 212222 24888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCH
Q 044812 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQL 411 (547)
Q Consensus 333 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 411 (547)
.|...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .| +...+..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998863 235678999999999999999999999988753 44 667777777344445699
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhC---CCC-----CchHHHHHHHHHcCCCHH
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSASVMHGN---SEMQDLAYKSLIQLE---PEN-----PSNYVSLSNLYASSRRWD 478 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~ 478 (547)
++|...|+++ ...| +...+..+..++...|+ .++|...++++.+.. |+. ..+|..++.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999987 3344 46788888899998888 888999999998874 432 257888999999999999
Q ss_pred HHHHHHHHHHhCC
Q 044812 479 AVAELRTMMKDRG 491 (547)
Q Consensus 479 ~A~~~~~~m~~~~ 491 (547)
+|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987654
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=5.6e-13 Score=129.00 Aligned_cols=268 Identities=12% Similarity=0.046 Sum_probs=205.5
Q ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC-----hHHHHhHHHHhhccCCchhHHHHHHHHHHc----CCC
Q 044812 219 RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN-----KVSLVSVLPTCSSLIGLSGGKQIHGFAIRK----ELN 289 (547)
Q Consensus 219 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~ 289 (547)
.....+......+...|++++|+..|++. ... .|+ ...+..+...+...|+++.|...++.+.+. +..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~a-l~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAA-VQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHH-Hhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 34556677788899999999999999988 442 333 246778888889999999999998887643 211
Q ss_pred C-chhHHHHHHHHHHhcCCHHHHHHHHhcC-CC---CCC----hhhHHHHHHHHHhcCC--------------------h
Q 044812 290 H-DVSLCNALIDMYSKCGSLDCARRVFEDS-SF---NKD----AITWSSIVSGYGLHGK--------------------G 340 (547)
Q Consensus 290 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~~~----~~~~~~li~~~~~~~~--------------------~ 340 (547)
| ...++..+...|...|++++|...+++. .+ .++ ..++..+...|...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 2 2457788899999999999999988752 10 122 3468888899999999 9
Q ss_pred HHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHhHhcCCH
Q 044812 341 HEAVLLYNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEICACVVDMLGRAGQL 411 (547)
Q Consensus 341 ~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 411 (547)
++|...+.+..+. +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999998887543 2122 2356788888899999999999999988754211122 34788889999999999
Q ss_pred HHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHcCCCH
Q 044812 412 DRALDFIKTM----PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------PSNYVSLSNLYASSRRW 477 (547)
Q Consensus 412 ~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~ 477 (547)
++|...+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 9999999876 11122 4578889999999999999999999998874332 55788999999999999
Q ss_pred HHHHHHHHHHHh
Q 044812 478 DAVAELRTMMKD 489 (547)
Q Consensus 478 ~~A~~~~~~m~~ 489 (547)
++|.+.+++..+
T Consensus 324 ~~A~~~~~~al~ 335 (406)
T 3sf4_A 324 DQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=3.1e-12 Score=108.73 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=140.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACV 401 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 401 (547)
.++..|..+...|...|++++|...|++..+.. +-+...+..+..++...|++++|...+....... +.+...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 356678888899999999999999999988853 2257788888888999999999999999887642 3356677778
Q ss_pred HHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHH
Q 044812 402 VDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (547)
...+...++++.|...+.+. ...| +...+..+..++...|++++|++.|+++++.+|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888999999999998876 2334 567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 044812 480 VAELRTMMKDRG 491 (547)
Q Consensus 480 A~~~~~~m~~~~ 491 (547)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999987653
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=8.1e-13 Score=124.10 Aligned_cols=265 Identities=12% Similarity=0.039 Sum_probs=198.1
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC-----hHHHHhHHHHhhccCCchhHHHHHHHHHHc----CCC-Cch
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN-----KVSLVSVLPTCSSLIGLSGGKQIHGFAIRK----ELN-HDV 292 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 292 (547)
.+......+...|++++|+..|+++ ... .|+ ...+..+...+...|+++.|...++...+. +.. ...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~a-l~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAA-VQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH-Hhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455667788888999999998887 442 233 356777788888888888888888876543 211 235
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCC----hhhHHHHHHHHHhcCC--------------------hHHHH
Q 044812 293 SLCNALIDMYSKCGSLDCARRVFEDS----SFNKD----AITWSSIVSGYGLHGK--------------------GHEAV 344 (547)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~li~~~~~~~~--------------------~~~a~ 344 (547)
.++..+...|...|++++|...+++. ...++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 56788888999999999999988752 10122 3367788888999999 89999
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHhHhcCCHHHHH
Q 044812 345 LLYNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP----TTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 345 ~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
..+++.... +..| ....+..+...+...|++++|...+++..+...-.+ ....+..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888876542 2122 234677888889999999999999998765421111 2347788889999999999999
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHcCCCHHHHH
Q 044812 416 DFIKTM----PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------PSNYVSLSNLYASSRRWDAVA 481 (547)
Q Consensus 416 ~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~ 481 (547)
..+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999876 11122 4578888999999999999999999998864322 347889999999999999999
Q ss_pred HHHHHHHhC
Q 044812 482 ELRTMMKDR 490 (547)
Q Consensus 482 ~~~~~m~~~ 490 (547)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998754
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=1.6e-12 Score=123.20 Aligned_cols=229 Identities=11% Similarity=0.042 Sum_probs=192.9
Q ss_pred hHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhcC-CC-CCChhhHHHHHHH
Q 044812 257 KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS-LDCARRVFEDS-SF-NKDAITWSSIVSG 333 (547)
Q Consensus 257 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~-~~-~~~~~~~~~li~~ 333 (547)
...|..+...+.+.|++++|...++.+++.. +-+..+|+.+..++...|+ +++|+..|++. .+ +.+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567777888899999999999999999886 5577889999999999997 99999999872 22 4467789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh-cCCHH
Q 044812 334 YGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR-AGQLD 412 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 412 (547)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999863 2267889999999999999999999999998752 3378889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC--------
Q 044812 413 RA-----LDFIKTM-PVEP-SPSIWGALVSASVMHG--NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR-------- 475 (547)
Q Consensus 413 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 475 (547)
+| +..+++. ...| +...|..+...+...| ++++|++.++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777765 3445 5678999999999888 689999999998 888999999999999999874
Q ss_pred -CHHHHHHHHHHH-HhC
Q 044812 476 -RWDAVAELRTMM-KDR 490 (547)
Q Consensus 476 -~~~~A~~~~~~m-~~~ 490 (547)
.+++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 358999999998 443
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=4.8e-13 Score=131.74 Aligned_cols=192 Identities=8% Similarity=0.009 Sum_probs=151.8
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSL-DCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLS 367 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 367 (547)
+...+..+...|...|++ ++|++.|++. .. +.+...|..+...|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 455566666666666666 6666666551 11 334567777888888888888888888888774 466677778888
Q ss_pred HHhcc---------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc--------CCHHHHHHHHHhC-CCCC----
Q 044812 368 ACGRS---------GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA--------GQLDRALDFIKTM-PVEP---- 425 (547)
Q Consensus 368 ~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p---- 425 (547)
.+... |++++|...|++..+.. +.+...|..+..+|... |++++|...|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 88888888888887652 33577888888888888 8899999999887 3345
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTM 486 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (547)
+...|..+..+|...|++++|++.|+++++.+|.++..+..++.++...|++++|.+.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6779999999999999999999999999999999999999999999999999999976544
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=1.7e-12 Score=118.18 Aligned_cols=220 Identities=10% Similarity=-0.009 Sum_probs=178.0
Q ss_pred hhccCCchhHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChH
Q 044812 267 CSSLIGLSGGKQIHGFAIRKEL---NHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGH 341 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~ 341 (547)
....|++++|...++.+.+... +.+..++..+...+...|++++|...|++. .. +.+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4556889999999999998642 224678889999999999999999999872 22 446788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 342 EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
+|...|+++.+.. +.+...+..+..++...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999863 235788999999999999999999999999865 454444444555567789999999999765
Q ss_pred -C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 422 -P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP----ENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 422 -~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
. ..++...+ .++..+...++.++|...++++.+..| .++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2 22343344 367777888899999999999887655 336789999999999999999999999998754
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=2.5e-12 Score=124.72 Aligned_cols=274 Identities=14% Similarity=0.104 Sum_probs=171.3
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcC
Q 044812 125 ATISKLSGEIKDLNVGMLIHGLSIKIGFVVDV----ILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS 200 (547)
Q Consensus 125 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 200 (547)
..+...+...|++++|...++.+++.+.. +. ..+..+..+|...|++++|...+++
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~------------------- 111 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH------------------- 111 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------
Confidence 33455566667777777777777665422 22 4677778888888888888888876
Q ss_pred CCchhHHHHHHHHhhcCC--CChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC-CCCCChHHHHhHHHHhhccCCchhHH
Q 044812 201 GDFSLVVRSRRVFDQMKR--RNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-RIEPNKVSLVSVLPTCSSLIGLSGGK 277 (547)
Q Consensus 201 g~~~~a~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~ 277 (547)
+.++...... .....+..+...|...|++++|+..+++. ... .-..+.
T Consensus 112 --------al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~-------------------- 162 (411)
T 4a1s_A 112 --------DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH-LTLARQLGDR-------------------- 162 (411)
T ss_dssp --------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCH--------------------
T ss_pred --------HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHhhch--------------------
Confidence 3333333322 23456788888889999999999988876 221 000000
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHhc-------CCCCC-ChhhHHHHHH
Q 044812 278 QIHGFAIRKELNHDVSLCNALIDMYSKCGS-----------------LDCARRVFED-------SSFNK-DAITWSSIVS 332 (547)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~-------~~~~~-~~~~~~~li~ 332 (547)
+....++..+...|...|+ +++|...+++ .+..+ ....+..+..
T Consensus 163 -----------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 231 (411)
T 4a1s_A 163 -----------LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGN 231 (411)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0012233444444444444 5555444433 12011 1235666677
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCC----CchhHHHHHHH
Q 044812 333 GYGLHGKGHEAVLLYNKMVCLGSK-PD----IITIVGVLSACGRSGLINEGLEIYNSVINTYRIK----PTTEICACVVD 403 (547)
Q Consensus 333 ~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~ 403 (547)
.|...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+...-. ....++..+..
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777776543110 11 2366777777888888888888887765532111 12466777888
Q ss_pred HhHhcCCHHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 404 MLGRAGQLDRALDFIKTMP-------VEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
.|...|++++|...+++.. ..+ ...++..+..+|...|++++|...++++.+..+
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 8888888888888887761 111 134777888889999999999999999988764
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=7.8e-12 Score=117.33 Aligned_cols=276 Identities=13% Similarity=0.084 Sum_probs=154.8
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCC
Q 044812 127 ISKLSGEIKDLNVGMLIHGLSIKIGFVVD----VILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202 (547)
Q Consensus 127 l~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 202 (547)
....+...|++++|...++++.+.... + ...+..+...+...|++++|...+++.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------- 69 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD-------------------- 69 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------
Confidence 344555666666666666666665321 2 345667777777888888888777663
Q ss_pred chhHHHHHHHHhhcCCC--ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC----hHHHHhHHHHhhccCC----
Q 044812 203 FSLVVRSRRVFDQMKRR--NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN----KVSLVSVLPTCSSLIG---- 272 (547)
Q Consensus 203 ~~~a~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~---- 272 (547)
.++......+ ....+..+...+...|++++|...+++......-.++ ..++..+...+...|+
T Consensus 70 -------l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (338)
T 3ro2_A 70 -------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142 (338)
T ss_dssp -------HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred -------HHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc
Confidence 2222222211 3456777788888888888888888776211111111 1233344444444444
Q ss_pred ----------------chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-ChhhHHHHHHHHH
Q 044812 273 ----------------LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK-DAITWSSIVSGYG 335 (547)
Q Consensus 273 ----------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~ 335 (547)
++.|...++...+ +....+..+ ....+..+...+.
T Consensus 143 ~~~~~~~~~~~~a~~~~~~A~~~~~~a~~----------------------------~~~~~~~~~~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 143 PGPQDTGEFPEDVRNALQAAVDLYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHY 194 (338)
T ss_dssp SSCC----CCHHHHHHHHHHHHHHHHHHH----------------------------HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHH----------------------------HHHhcCCHHHHHHHHHHHHHHHH
Confidence 3333333322221 111111011 1224555556666
Q ss_pred hcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHhH
Q 044812 336 LHGKGHEAVLLYNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP----TTEICACVVDMLG 406 (547)
Q Consensus 336 ~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ 406 (547)
..|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+...-.. ...++..+...+.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 666666666666655432 1111 123556666667777777777777776554311111 1456667777777
Q ss_pred hcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 407 RAGQLDRALDFIKTM-P---VEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
..|++++|...+++. . ..++ ..++..+...+...|++++|...++++.+..+
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 788888887777765 1 0111 34677788888888999999999988887654
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=8.7e-12 Score=119.64 Aligned_cols=238 Identities=8% Similarity=-0.008 Sum_probs=147.7
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC--ChhhHHHHHHHHHHCCCHHH
Q 044812 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR--NVYAWTAMINGYVQNGDLDE 239 (547)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~ 239 (547)
....+...|++++|...|++..+ ++...+.+ ...+|..+...|...|++++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~---------------------------~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~ 161 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAES---------------------------KLIFVKDRIEKAEFFFKMSESYYYMKQTYF 161 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT---------------------------TGGGCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH---------------------------HHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55566777888888887776432 22222211 34567788888888888888
Q ss_pred HHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-
Q 044812 240 ALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS- 318 (547)
Q Consensus 240 A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 318 (547)
|+..+++...-..-.++. .+....+++.+..+|...|++++|...|++.
T Consensus 162 A~~~~~~al~~~~~~~~~------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 162 SMDYARQAYEIYKEHEAY------------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHHHHHHHTCSTT------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccc------------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 888887762110000100 0011235566677777777777777776541
Q ss_pred CC---CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 319 SF---NKD----AITWSSIVSGYGLHGKGHEAVLLYNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 319 ~~---~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
.+ .++ ..++..+...|...|++++|...+++..+. +..| ...++..+...+...|++++|...+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00 111 135777778888888888888888877662 2223 35667777888888888888888888765
Q ss_pred HhcC---CCCchhHHHHHHHHhHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 387 NTYR---IKPTTEICACVVDMLGRAGQ---LDRALDFIKTMPVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 387 ~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
+... -+.....+..+...+...|+ +++|+.++++.+..|+. ..+..+...|...|++++|...++++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 292 AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4311 11112234556677777777 77777777777544433 35666777777777777777777777664
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=5.6e-12 Score=120.96 Aligned_cols=225 Identities=8% Similarity=-0.002 Sum_probs=162.2
Q ss_pred HHHhhccCCchhHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCC-----hhhHHH
Q 044812 264 LPTCSSLIGLSGGKQIHGFAIRK----ELNH-DVSLCNALIDMYSKCGSLDCARRVFEDS----SFNKD-----AITWSS 329 (547)
Q Consensus 264 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~ 329 (547)
...+...|++++|...++...+. +.++ ...++..+..+|...|+++.|...+++. .-.++ ..+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34445556666666666665542 1111 2456777888888889888888887651 10121 346888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CC-CCchhHHHH
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTY---RI-KPTTEICAC 400 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~~ 400 (547)
+...|...|++++|...+++..+. +-.+ ...++..+..++...|++++|.+.+++..+.. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 899999999999999999988754 1111 12478889999999999999999999887621 22 234677889
Q ss_pred HHHHhHhcCCHHHHHHHHHhC-C-----CCCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 401 VVDMLGRAGQLDRALDFIKTM-P-----VEPS-PSIWGALVSASVMHGN---SEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~-~-----~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
+...|.+.|++++|...+++. . ..|. ...+..+...+...|+ .++|+..+++. ...|.....+..++.+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 999999999999999999876 1 1222 2245677888888898 77777777765 2224445678899999
Q ss_pred HHcCCCHHHHHHHHHHHHh
Q 044812 471 YASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~ 489 (547)
|...|++++|.+.+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998854
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=2.3e-11 Score=103.27 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=139.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
+..+|..+...|...|++++|+..|++ +.. +.+...+..+...|...|++++|...+....... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788899999999999999999986 222 3456778889999999999999999999988763 2356677777888
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQ 446 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 446 (547)
+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++. ...| +..+|..++.+|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 889999999999999987652 346778888999999999999999999987 3344 567899999999999999999
Q ss_pred HHHHHHHHhhCCCCC
Q 044812 447 DLAYKSLIQLEPENP 461 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~ 461 (547)
++.|+++++.+|.++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998653
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=2.5e-09 Score=108.24 Aligned_cols=416 Identities=8% Similarity=0.020 Sum_probs=274.6
Q ss_pred chHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCC---hhHHHHHH
Q 044812 36 LKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQH--K-DVYLYNSLINGYVKNHG---HNEALELF 109 (547)
Q Consensus 36 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~---~~~A~~~~ 109 (547)
..+....+++.+... +-|...|..++..+.+.+.++.+..+|+.+.. | ....|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455667777776 56899999999999999999999999998864 3 45577778888888888 99999999
Q ss_pred HHhhhCC-CCCCcchHHHHHHHHccCCCc--------HHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHH---------h
Q 044812 110 SNMYYSN-VSPDDFTLATISKLSGEIKDL--------NVGMLIHGLSIK-IGF-VVD-VILANSLMSMYV---------K 168 (547)
Q Consensus 110 ~~m~~~~-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~l~~~~~---------~ 168 (547)
+...... ..|+...|..-+....+.++. +.+.++|+..+. .|. .++ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988753 136777777766655554443 334577776654 355 443 457777766543 2
Q ss_pred cCChHHHHHHhccCCC-C--Ch-hhH---HHHHHHHHc----------CCCchhHHHHHHHHhh-------cCC------
Q 044812 169 CGKFSECLNLFDEMPQ-R--NV-GSW---NVRISGHAS----------SGDFSLVVRSRRVFDQ-------MKR------ 218 (547)
Q Consensus 169 ~g~~~~A~~~~~~~~~-~--~~-~~~---~~li~~~~~----------~g~~~~a~~a~~~~~~-------~~~------ 218 (547)
.++++.+..+|++... | +. ..| ..+...+.. ..+++. |...+.+ +..
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~---Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMN---ARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHH---HHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHH---HHHHHHHHHHHHHhHhhcccccc
Confidence 3456778888888765 2 11 122 222222100 001111 2222221 110
Q ss_pred --------C--C------hhhHHHHHHHHHHCC-------CHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchh
Q 044812 219 --------R--N------VYAWTAMINGYVQNG-------DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSG 275 (547)
Q Consensus 219 --------~--~------~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 275 (547)
| + ...|...+..--..+ ..+.+..+|++.... ++-+...|...+.-+...|+.+.
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTT
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHH
Confidence 0 0 133444444322222 134456677777333 34456677777777778888889
Q ss_pred HH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-C-----------CCC------------hhhHHHH
Q 044812 276 GK-QIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS-F-----------NKD------------AITWSSI 330 (547)
Q Consensus 276 a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-----------~~~------------~~~~~~l 330 (547)
|. .+++..... ++.+...+-..+....+.|++++|..+|++.- . .|+ ...|...
T Consensus 362 a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y 440 (679)
T 4e6h_A 362 VITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY 440 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH
Confidence 96 999999864 35667777888888889999999999997621 0 132 2357777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc
Q 044812 331 VSGYGLHGKGHEAVLLYNKMVCL-GSKPDIITIVGVLSACGR-SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA 408 (547)
Q Consensus 331 i~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (547)
+....+.|+.+.|..+|.+..+. +. +....|...+..-.+ .++.+.|..+|+...+.+ +.+...+...++.....
T Consensus 441 ~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 441 MNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhC
Confidence 77778889999999999999875 21 122333322222223 355899999999998864 34566677888888889
Q ss_pred CCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 409 GQLDRALDFIKTM-PVEP----SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 409 g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
|+.+.|..+|++. ...| ....|...+..-.+.|+.+.+..+.+++.+..|+++
T Consensus 518 ~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999999986 3233 235888888888899999999999999999998765
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=4e-10 Score=104.36 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=125.7
Q ss_pred HHHHHHHHHchhcCCCCCChHHHHhHHHHhh-------ccCCc-------hhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044812 238 DEALVLFLEMQLKDRIEPNKVSLVSVLPTCS-------SLIGL-------SGGKQIHGFAIRKELNHDVSLCNALIDMYS 303 (547)
Q Consensus 238 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (547)
++|..+|++. ... .+-+...|..++..+. +.|++ ++|..++++..+.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~a-l~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQC-LLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHH-HHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566666665 221 1223344444444443 23554 566666666665311334456666666677
Q ss_pred hcCCHHHHHHHHhc-CCCCCC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHH
Q 044812 304 KCGSLDCARRVFED-SSFNKD-AI-TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC-GRSGLINEGL 379 (547)
Q Consensus 304 ~~g~~~~A~~~~~~-~~~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~ 379 (547)
+.|++++|..+|++ +.+.|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777765 233343 22 56666666667777777777777776643 12333333322221 1256777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 380 EIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-P---VEP--SPSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
.+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777666542 224566666666677777777777777665 1 233 3446666666666677777777777777
Q ss_pred HhhCCCCC
Q 044812 454 IQLEPENP 461 (547)
Q Consensus 454 ~~~~~~~~ 461 (547)
.+..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 77766544
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=121.92 Aligned_cols=237 Identities=14% Similarity=0.123 Sum_probs=111.0
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC-------CCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHc------
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKD-------RIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK------ 286 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 286 (547)
+..++..+...+...|++++|+.+++++ ... ..+.....+..+...+...|++++|...++.+.+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQA-LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3456778888888888888888888887 331 11112334444555555555555555555554432
Q ss_pred CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-C
Q 044812 287 EL-NHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL------GSKP-D 358 (547)
Q Consensus 287 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~ 358 (547)
+. +....++..+...|. ..|++++|...++++.+. +-.| .
T Consensus 105 ~~~~~~~~~~~~l~~~~~--------------------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYG--------------------------------KRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp TTCHHHHHHHHHHHHHHH--------------------------------TTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCChHHHHHHHHHHHHHH--------------------------------HcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 11 112233444444444 444444444444444332 1111 1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-----C-CCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC----------
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTY-----R-IKPTTEICACVVDMLGRAGQLDRALDFIKTMP---------- 422 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------- 422 (547)
...+..+...+...|++++|.++++++.+.. + .+....++..+...|...|++++|...++++.
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 2334444444555555555555555443320 0 01123344445555555555555555554431
Q ss_pred CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 423 VEP-------SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 423 ~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
..+ ....+..+...+...+.+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 001 0111222223333444555555566666666666666777777777777777777777776543
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=4.5e-11 Score=101.35 Aligned_cols=161 Identities=12% Similarity=0.076 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG 406 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (547)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 4444455555555555555555554431 2234555555556666666666666666665431 224555666666666
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHH
Q 044812 407 RAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELR 484 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (547)
..|++++|.+.++++ . ...+...+..+...+...|++++|...++++.+..|.++..+..++.++...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777766665 1 22356677777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 044812 485 TMMKDR 490 (547)
Q Consensus 485 ~~m~~~ 490 (547)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887654
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=9.9e-10 Score=104.84 Aligned_cols=265 Identities=12% Similarity=0.019 Sum_probs=187.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH----HHHhHHHHhhccCCchhHHHHHHHHHHcCCC-Cc----hhH
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV----SLVSVLPTCSSLIGLSGGKQIHGFAIRKELN-HD----VSL 294 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 294 (547)
+......+...|++++|...+++. .......+.. .+..+...+...|+++.|...+++..+.... .+ ..+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLA-LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344556677889999999999887 3332122222 4556667788889999999998887753211 11 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhc-------CCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHH
Q 044812 295 CNALIDMYSKCGSLDCARRVFED-------SSFN--KD-AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK--P--DII 360 (547)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~-------~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~ 360 (547)
+..+...+...|++++|...+++ .+.. |. ...+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 56778889999999999988875 2311 22 235667788899999999999999998764321 1 245
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHH-----HHHHHhHhcCCHHHHHHHHHhCC-CCCC-----HHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA-----CVVDMLGRAGQLDRALDFIKTMP-VEPS-----PSI 429 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~ 429 (547)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677788889999999999999998865421111111121 23345778999999999999872 2221 335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-CchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPE-----N-PSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
+..+...+...|++++|...++++.+..+. + ...+..++.++...|+.++|.+.+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677888999999999999999998876322 1 23677788999999999999999998754
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=2.1e-11 Score=124.87 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=140.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHH
Q 044812 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACV 401 (547)
Q Consensus 324 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 401 (547)
..+|+.|...|.+.|++++|...|++.++. .| +...+..+..++.+.|++++|++.|++..+. .| +...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 457888888999999999999999998885 45 4778888999999999999999999988865 44 57888899
Q ss_pred HHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHH
Q 044812 402 VDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (547)
..+|.+.|++++|++.|++. ...| +...|..+..+|...|++++|++.|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999886 4455 467899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 044812 480 VAELRTMMKD 489 (547)
Q Consensus 480 A~~~~~~m~~ 489 (547)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888754
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=1.4e-10 Score=107.50 Aligned_cols=214 Identities=9% Similarity=0.049 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCH-------HHHHHHHhc-CC-CCCC-hhhHHHHHHHHHh
Q 044812 274 SGGKQIHGFAIRKELNHDVSLCNALIDMYSK-------CGSL-------DCARRVFED-SS-FNKD-AITWSSIVSGYGL 336 (547)
Q Consensus 274 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~-~~-~~~~-~~~~~~li~~~~~ 336 (547)
+.|...|+++.... +.+...|..++..+.. .|++ ++|..+|++ +. +.|+ ...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888765 5677788888877763 5875 899999987 33 3554 5589999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhH-hcCCHHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPD-II-TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLG-RAGQLDR 413 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 413 (547)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 554 33 78889999999999999999999998641 234555544433322 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC-CCchHHHHHHHHHcCCCHHHHHHHHHHH
Q 044812 414 ALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQL---EPE-NPSNYVSLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 414 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 487 (547)
|..+|++. ...| +...|..++..+.+.|++++|..+|+++++. .|. ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 2233 5778999999999999999999999999996 342 5668889999999999999999999998
Q ss_pred HhCCC
Q 044812 488 KDRGL 492 (547)
Q Consensus 488 ~~~~~ 492 (547)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 76543
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=5.1e-10 Score=107.04 Aligned_cols=230 Identities=11% Similarity=0.035 Sum_probs=116.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHchhcC-CCCCC----hHHHHhHHHHhhccCCchhHHHHHHHHHHcCC-----C-Cchh
Q 044812 225 TAMINGYVQNGDLDEALVLFLEMQLKD-RIEPN----KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-----N-HDVS 293 (547)
Q Consensus 225 ~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~ 293 (547)
......+...|++++|+..|++. ... ...++ ..++..+...+...|+++.|...+.+..+... . ....
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREA-EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHH-HHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34556677889999999999887 332 11222 23455566666666666666666666554210 0 0133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc-------CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHH
Q 044812 294 LCNALIDMYSKCGSLDCARRVFED-------SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCL----GSKPDIIT 361 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~ 361 (547)
+++.+..+|...|++++|...|++ .+..+ ...+++.+...|...|++++|...+++..+. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 455566666666666666665543 11000 1123555555566666666666666555441 11112444
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCC---CCchhHHHHHHHHhHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRI---KPTTEICACVVDMLGRAGQ---LDRALDFIKTMPVEPSP-SIWGALV 434 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~ 434 (547)
+..+...+.+.|++++|...+++..+...- +.....+..+...+...|+ +.+|+..+++....|+. ..+..+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la 343 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 555555555666666666665555443111 1112233334444444454 55555555554322222 2334444
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 044812 435 SASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~ 455 (547)
..|...|++++|...|+++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555443
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=4.7e-12 Score=117.53 Aligned_cols=240 Identities=10% Similarity=0.063 Sum_probs=139.2
Q ss_pred hhhHHHHHHHHHcCCCchhHHHHHHHHhh----c----CCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcC------C
Q 044812 187 VGSWNVRISGHASSGDFSLVVRSRRVFDQ----M----KRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKD------R 252 (547)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~a~~a~~~~~~----~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~------~ 252 (547)
...+..+...+...|++++|....+.... . .......+..+...|...|++++|+..+++. ... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA-LAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHhCC
Confidence 34688888999999999995333322222 1 1124567888999999999999999999988 332 2
Q ss_pred C-CCChHHHHhHHHHhhccCCchhHHHHHHHHHHc------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCh
Q 044812 253 I-EPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK------ELNH-DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDA 324 (547)
Q Consensus 253 ~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 324 (547)
. +.....+..+...+...|++++|...++.+.+. +..| ...++..+...+...|++++|...++
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-------- 177 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ-------- 177 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH--------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--------
Confidence 2 223567888899999999999999999888764 1111 23344555555555555555555554
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc------CC
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCL------GSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTY------RI 391 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~ 391 (547)
++.+. +..|+ ..++..+...+...|++++|...++++.+.. ..
T Consensus 178 ------------------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 178 ------------------------RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp ------------------------HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ------------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33322 11111 2234444444444455555555444443210 00
Q ss_pred CC-------chhHHHHHHHHhHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 392 KP-------TTEICACVVDMLGRAGQLDRALDFIKTMP-VEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 392 ~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
.+ ....+..+...+...+.+.+|...++... ..| +..++..+..+|...|++++|.+.+++++++.|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 11112222333344455555666666552 234 3457888999999999999999999999887653
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=2.6e-10 Score=100.53 Aligned_cols=205 Identities=10% Similarity=0.002 Sum_probs=141.5
Q ss_pred CChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHH
Q 044812 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVS 332 (547)
Q Consensus 255 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~ 332 (547)
.|...+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++ +...| +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 345677777788888888888888888888876436666676688888888888888888876 22234 4456777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CH-------HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHH
Q 044812 333 GYGLHGKGHEAVLLYNKMVCLGSKP-DI-------ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT---TEICACV 401 (547)
Q Consensus 333 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 401 (547)
.|...|++++|...+++..+. .| +. ..|..+...+...|++++|++.|++..+. .|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 888888888888888888775 33 33 44666777777888888888888887643 454 4566667
Q ss_pred HHHhHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 402 VDMLGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
...|...|+. .++++ . ...+...|.... ....+.+++|+..++++++.+|.++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7776655443 22222 0 112333443333 23456679999999999999999887777766554
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=1.6e-10 Score=113.82 Aligned_cols=212 Identities=12% Similarity=0.041 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCc-hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044812 236 DLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL-SGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRV 314 (547)
Q Consensus 236 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (547)
.+++++..++.. .. ..+.+...+..+...+...|++ ++|...++++.+.. +.+...+..+..+|...|++++|...
T Consensus 83 ~~~~al~~l~~~-~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEV-LG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHH-HT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHH-hc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356777777765 33 2334677788888888899999 99999999888875 45677899999999999999999999
Q ss_pred Hhc-CCCCCChhhHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CcHH
Q 044812 315 FED-SSFNKDAITWSSIVSGYGLH---------GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS--------GLIN 376 (547)
Q Consensus 315 ~~~-~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--------g~~~ 376 (547)
|++ +...|+...+..+...|... |++++|...|++..+.. +-+...+..+..++... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 987 45568878888899999999 99999999999998863 23577888888888888 9999
Q ss_pred HHHHHHHHHHHhcCCC---CchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIK---PTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYK 451 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 451 (547)
+|...|++..+.. + .+...|..+..+|...|++++|...|++. ...| +...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998652 2 37788999999999999999999999987 3344 55688888999999999888887654
Q ss_pred HH
Q 044812 452 SL 453 (547)
Q Consensus 452 ~~ 453 (547)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=6e-09 Score=105.50 Aligned_cols=406 Identities=11% Similarity=0.021 Sum_probs=268.7
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCC---cHHHHHHHHHHHHhC-CCCchhHH
Q 044812 84 KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKD---LNVGMLIHGLSIKIG-FVVDVILA 159 (547)
Q Consensus 84 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~ 159 (547)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ ++.+..+|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47889999999999999999999999999986 34456667777888788888 999999999998864 13788888
Q ss_pred HHHHHHHHhcCCh--------HHHHHHhccCC------CC-ChhhHHHHHHHHHcCC---Cc---hhHHHHHHHHhhcCC
Q 044812 160 NSLMSMYVKCGKF--------SECLNLFDEMP------QR-NVGSWNVRISGHASSG---DF---SLVVRSRRVFDQMKR 218 (547)
Q Consensus 160 ~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~~g---~~---~~a~~a~~~~~~~~~ 218 (547)
...+....+.++. +.+.++|+... .+ +...|...+.-....+ .. .+...+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766665553 23346666522 22 3346776665443321 11 123447777777653
Q ss_pred -C--Ch-hhH---HHHHHHH----------HHCCCHHHHHHHHHHchh-cCCC----C-----------C--C------h
Q 044812 219 -R--NV-YAW---TAMINGY----------VQNGDLDEALVLFLEMQL-KDRI----E-----------P--N------K 257 (547)
Q Consensus 219 -~--~~-~~~---~~li~~~----------~~~~~~~~A~~~~~~m~~-~~~~----~-----------p--~------~ 257 (547)
| +. .+| ..+...+ -...+++.|...+.++.. ..++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 2 11 222 2222111 011234445555554310 0011 1 1 0 0
Q ss_pred HHHHhHHHHhhccC-------CchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhc-CCC-CCChhhH
Q 044812 258 VSLVSVLPTCSSLI-------GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCAR-RVFED-SSF-NKDAITW 327 (547)
Q Consensus 258 ~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~-~~~-~~~~~~~ 327 (547)
..|...+.---..+ ..+.+..+|++++... +....+|...+..+...|+.++|. .+|++ +.. +.+...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 22333333222221 1233456777777654 557788888888888899998996 89876 222 3455667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGS---------KPD------------IITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
...+...-+.|++++|..+|+++..... .|+ ...|...+....+.|..+.|..+|..+.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888888899999999999999886410 132 2357777777778899999999999998
Q ss_pred HhcCCCCchhHHHHHHHHhHhc-CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C
Q 044812 387 NTYRIKPTTEICACVVDMLGRA-GQLDRALDFIKTM--PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE---N 460 (547)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~ 460 (547)
+.. .......|...+..-.+. ++.+.|..+|+.. ....+...|...+......|+.+.|..+|++++...|+ .
T Consensus 462 ~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred Hhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 641 122334444333333344 4589999999987 22235667778888888899999999999999998773 4
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
...|..++..-.+.|+.+.+.++.+++.+.-.
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56788888888999999999999999976543
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=4.4e-10 Score=107.50 Aligned_cols=230 Identities=8% Similarity=0.008 Sum_probs=152.7
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC--CChhhHHHHHHHHHHCCCHH
Q 044812 161 SLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR--RNVYAWTAMINGYVQNGDLD 238 (547)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~ 238 (547)
.....+...|++++|...|++..+ ++..... ....++..+...|...|+++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~---------------------------~~~~~~~~~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEK---------------------------ELPFVSDDIEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT---------------------------TGGGCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHH---------------------------HHhhCCChHHHHHHHHHHHHHHHHcCCcH
Confidence 345566778888888888877432 2222111 12345667777777777777
Q ss_pred HHHHHHHHchhcCCCCC-----ChHHHHhHHHHhhccCCchhHHHHHHHHHHc----CCC-CchhHHHHHHHHHHhcCCH
Q 044812 239 EALVLFLEMQLKDRIEP-----NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK----ELN-HDVSLCNALIDMYSKCGSL 308 (547)
Q Consensus 239 ~A~~~~~~m~~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 308 (547)
.|+..+++......-.+ ...++..+...+...|+++.|...+....+. +.+ ....++..+..+|...|++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 77777766521111111 1345666777777778888877777776653 111 1234677788889999999
Q ss_pred HHHHHHHhcC-------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHHhccCc--
Q 044812 309 DCARRVFEDS-------SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS---KP-DIITIVGVLSACGRSGL-- 374 (547)
Q Consensus 309 ~~A~~~~~~~-------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p-~~~~~~~l~~~~~~~g~-- 374 (547)
++|...|++. + .| ...++..+...|.+.|++++|...+++..+... .| ....+..+...+...++
T Consensus 239 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKV-PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 9998888752 3 23 245678888899999999999999998876421 12 23456666666777787
Q ss_pred -HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 375 -INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 375 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
+.+|..++++.. ..+.....+..+...|...|++++|...|++.
T Consensus 318 ~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 318 KIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777777532 22224456778889999999999999988875
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=1.4e-10 Score=102.24 Aligned_cols=189 Identities=12% Similarity=-0.010 Sum_probs=112.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhc---CCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFED---SSFN-KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGV 365 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 365 (547)
++..+......+...|++++|...|++ .. + ++...+..+..++...|++++|...+++..+. .| +...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 445666666677777777777777764 22 2 55555555666677777777777777776664 33 34556666
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCch-------hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTT-------EICACVVDMLGRAGQLDRALDFIKTM-PVEPS---PSIWGALV 434 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~ 434 (547)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++. ...|+ ...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 666777777777777777666542 1123 34555666666666777777766665 44454 23555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.++... +...++++....+.++..|... .....+.+++|...+++..+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 555432 3344555555554443333322 2334455699999999887643
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=5.8e-10 Score=94.40 Aligned_cols=169 Identities=12% Similarity=0.017 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDSS-F-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC 369 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 369 (547)
...+..+...+...|++++|...+++.- . +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3456778888999999999999998742 2 3456778889999999999999999999998863 34678888899999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++ .. ..+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998752 446788889999999999999999999987 22 345778999999999999999999
Q ss_pred HHHHHHHhhCCCCCch
Q 044812 448 LAYKSLIQLEPENPSN 463 (547)
Q Consensus 448 ~~~~~~~~~~~~~~~~ 463 (547)
..++++.+..|.++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988876543
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=5.1e-09 Score=99.88 Aligned_cols=268 Identities=9% Similarity=-0.026 Sum_probs=154.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCCCcc----hHHHHHHHHccCCCcHHHHHHHHHHHHhCCC-Cc----hhHHHHH
Q 044812 92 LINGYVKNHGHNEALELFSNMYYSNVSPDDF----TLATISKLSGEIKDLNVGMLIHGLSIKIGFV-VD----VILANSL 162 (547)
Q Consensus 92 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l 162 (547)
....+...|++++|...+++........+.. ++..+...+...|+++.|...+++..+.... .+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445567888999998888877653221221 3555666777889999998888887654211 11 2335667
Q ss_pred HHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCC----ChhhHHHHHHHHHHCCCHH
Q 044812 163 MSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRR----NVYAWTAMINGYVQNGDLD 238 (547)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~ 238 (547)
...+...|++++|...+++ +.++......+ ....+..+...+...|+++
T Consensus 100 a~~~~~~G~~~~A~~~~~~---------------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEK---------------------------AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHH---------------------------HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHH---------------------------HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 7888899999999998877 44444443332 2345677888899999999
Q ss_pred HHHHHHHHchhcCC-CCC--ChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCch-hHHH-----HHHHHHHhcCCHH
Q 044812 239 EALVLFLEMQLKDR-IEP--NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDV-SLCN-----ALIDMYSKCGSLD 309 (547)
Q Consensus 239 ~A~~~~~~m~~~~~-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~ 309 (547)
+|...+++...... ..+ ...++..+...+...|++++|...++........++. ..+. ..+..+...|+++
T Consensus 153 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 232 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232 (373)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHH
Confidence 99999987622111 111 1234555666667777777777777766653211111 1111 2233355667777
Q ss_pred HHHHHHhcCC-CCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHH
Q 044812 310 CARRVFEDSS-FNKD-----AITWSSIVSGYGLHGKGHEAVLLYNKMVCL----GSKPDI-ITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 310 ~A~~~~~~~~-~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~a 378 (547)
+|...+++.- ..+. ...+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|
T Consensus 233 ~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 7777776532 1111 112344555566666666666666555332 111111 1333344444555555555
Q ss_pred HHHHHHHH
Q 044812 379 LEIYNSVI 386 (547)
Q Consensus 379 ~~~~~~~~ 386 (547)
...+++..
T Consensus 313 ~~~l~~al 320 (373)
T 1hz4_A 313 QRVLLDAL 320 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=4.7e-09 Score=94.53 Aligned_cols=184 Identities=13% Similarity=0.105 Sum_probs=121.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 044812 290 HDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKD----AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS-KPD-IITI 362 (547)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~ 362 (547)
.+...+..+...+.+.|++++|...|++. ...|+ ...+..+..+|...|++++|...|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555666677777777777777777652 22232 34566677777777777777777777776522 112 3445
Q ss_pred HHHHHHHhc--------cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044812 363 VGVLSACGR--------SGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGAL 433 (547)
Q Consensus 363 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 433 (547)
..+..++.. .|++++|...|+++.+.+ |+ ......+.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 556666666 777777777777776552 32 22222211111110000 1124677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHcC----------CCHHHHHHHHHHHHhCC
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENP---SNYVSLSNLYASS----------RRWDAVAELRTMMKDRG 491 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 491 (547)
...|...|++++|+..|+++++..|.++ ..+..++.+|... |++++|...++++.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 8899999999999999999999998854 4788999999876 99999999999987644
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=6.9e-10 Score=101.11 Aligned_cols=223 Identities=17% Similarity=0.175 Sum_probs=154.2
Q ss_pred hhccCCchhHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---------CCCC-ChhhHHH
Q 044812 267 CSSLIGLSGGKQIHGFAIRK-------ELNHDVSLCNALIDMYSKCGSLDCARRVFEDS---------SFNK-DAITWSS 329 (547)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~-~~~~~~~ 329 (547)
....|+++.|...+++..+. ..+....++..+...|...|++++|...+++. +-.| ...++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34678888888888887762 22334667888999999999999999998751 1112 2446888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc-----C-CCCchh
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCL------GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTY-----R-IKPTTE 396 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~ 396 (547)
+...|...|++++|...+.+..+. .-.| ...++..+...+...|++++|...++++.+.. + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 899999999999999999998764 1123 35678888889999999999999999887641 1 122456
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTMP----------VEPS-PSIWGALVSASVMHGN------SEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~ 459 (547)
++..+...|...|++++|...+++.. ..+. ...|..+...+...+. +..+...++......|.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 78888999999999999999998761 1222 2234444444333332 22333333332223355
Q ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 460 NPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+.++..++.+|...|++++|.+++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566889999999999999999999998764
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=1e-08 Score=92.05 Aligned_cols=241 Identities=7% Similarity=0.009 Sum_probs=145.5
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 307 (547)
++-..-.|++..++.-...+ . ... +......+.+++...|+++.. ..-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~-~--~~~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF-S--KVT-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS-S--CCC-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT-
T ss_pred HHHHHHhhHHHHHHHHHHhc-C--ccc-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc-
Confidence 34455567777777743333 1 112 223344455666666665531 1112232233333332 2322
Q ss_pred HHHHHHHHhcCC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044812 308 LDCARRVFEDSS-F-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNS 384 (547)
Q Consensus 308 ~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 384 (547)
|+..|++.- . .++...+..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556665421 1 3455555667777888888888888888776654322 456667777778888888888888888
Q ss_pred HHHhcCCCC-----chhHHHHHHHH--hHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 385 VINTYRIKP-----TTEICACVVDM--LGRAG--QLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 385 ~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
|.+. .| +-.+...++.+ ....| ++.+|..+|+++ ...|+..+...++.++.+.|++++|++.++.+.
T Consensus 162 ~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8644 45 24444455544 22233 788888888887 334553333344447778888888888888776
Q ss_pred hh----------CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 455 QL----------EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 455 ~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+. +|.++.++..++.+....|+ +|.++++++++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 65 47777777777766666776 7788888877654
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=1.3e-09 Score=111.73 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=136.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLS 367 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~ 367 (547)
+...++.|..+|.+.|++++|++.|++ +.+.| +...|+.+..+|.+.|++++|+..|++.++. .| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 466788899999999999999999986 23334 4678899999999999999999999999885 45 4778899999
Q ss_pred HHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSE 444 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 444 (547)
++...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++. ...| +...|..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998865 44 6788999999999999999999999987 4456 4668999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 044812 445 MQDLAYKSLIQLE 457 (547)
Q Consensus 445 ~a~~~~~~~~~~~ 457 (547)
+|.+.++++++..
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988753
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=3.3e-09 Score=84.26 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=81.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-P-VEPSPSIWGALVSASVM 439 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 439 (547)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++ . ...+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3344445555555555555555554431 223445555555556666666666666554 1 12345566677777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 440 HGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.|++++|...++++.+..|.++..+..++.++...|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 788888888888887777777777778888888888888888888777653
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=9.9e-09 Score=90.00 Aligned_cols=184 Identities=8% Similarity=-0.004 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CH-HHHHH
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFEDS-SFNKD----AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DI-ITIVG 364 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~-~~~~~ 364 (547)
...+..+...+.+.|++++|+..|++. ...|+ ...+..+..+|.+.|++++|...|++..+..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667777788888888888762 11232 2456667777888888888888888877653211 11 13333
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHHhCCCCC
Q 044812 365 VLSACGR------------------SGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGRAGQLDRALDFIKTMPVEP 425 (547)
Q Consensus 365 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 425 (547)
+..++.. .|++++|...|+++.+. .|+ ...+....... ......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH----------
Confidence 4444432 45666666666666643 232 22221111100 000000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP---SNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
......+...+.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123466788899999999999999999999876 56899999999999999999999999877643
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=3.9e-09 Score=95.07 Aligned_cols=203 Identities=8% Similarity=-0.019 Sum_probs=143.3
Q ss_pred CChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC---C-hhh
Q 044812 255 PNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHD---VSLCNALIDMYSKCGSLDCARRVFEDS-SFNK---D-AIT 326 (547)
Q Consensus 255 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~-~~~ 326 (547)
.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++. ...| . ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677788889999999999999999998875 223 567888999999999999999999872 2123 2 345
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHH
Q 044812 327 WSSIVSGYGL--------HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEIC 398 (547)
Q Consensus 327 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (547)
+..+..++.. .|++++|...|++..+. .|+... ...+...+...... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~-------------~~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHEL-------------VDDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTT-------------HHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchh-------------HHHHHHHHHHHHHH-----HHHHH
Confidence 7778888888 99999999999999886 343211 11111111111111 11224
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCCch
Q 044812 399 ACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMH----------GNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 399 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
..+...|.+.|++++|...|+++ ...|+ ...+..+..+|... |++++|+..++++++..|+++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56777888889999999988876 22233 34677778888766 88999999999999999988643
Q ss_pred ---HHHHHHHHHcCCCHH
Q 044812 464 ---YVSLSNLYASSRRWD 478 (547)
Q Consensus 464 ---~~~l~~~~~~~g~~~ 478 (547)
...+..++.+.|+++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444444444443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=4e-09 Score=96.68 Aligned_cols=200 Identities=11% Similarity=0.040 Sum_probs=144.3
Q ss_pred CchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-------CCCCCC--hhhHHHHHHHHHhcCChHH
Q 044812 272 GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-------SSFNKD--AITWSSIVSGYGLHGKGHE 342 (547)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~--~~~~~~li~~~~~~~~~~~ 342 (547)
++++|...+... ...|...|++++|...|++ .+ .+. ..+|+.+...|...|++++
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHH
Confidence 477777776655 4567788999988888864 33 222 4578899999999999999
Q ss_pred HHHHHHHHHHcCC---CC--CHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHhHhcCCHH
Q 044812 343 AVLLYNKMVCLGS---KP--DIITIVGVLSACGRS-GLINEGLEIYNSVINTYRIKPT----TEICACVVDMLGRAGQLD 412 (547)
Q Consensus 343 a~~~~~~m~~~g~---~p--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 412 (547)
|+..+++..+... .+ -..++..+...|... |++++|+..|++..+...-..+ ..++..+...+.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 9999988875411 11 135788888889986 9999999999998764211111 356888899999999999
Q ss_pred HHHHHHHhC-CCCC---CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch-----HHHHHHHHH--cCCC
Q 044812 413 RALDFIKTM-PVEP---SP-----SIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN-----YVSLSNLYA--SSRR 476 (547)
Q Consensus 413 ~A~~~~~~~-~~~p---~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~ 476 (547)
+|+..|++. ...| .. ..|..++.++...|++++|+..+++++++.|..... +..++.++. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 999999986 2222 21 257788889999999999999999999998875543 344566665 4577
Q ss_pred HHHHHHHHHHH
Q 044812 477 WDAVAELRTMM 487 (547)
Q Consensus 477 ~~~A~~~~~~m 487 (547)
+++|++.++++
T Consensus 256 ~~~A~~~~~~~ 266 (292)
T 1qqe_A 256 LSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhccC
Confidence 88888887654
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=5.8e-09 Score=95.59 Aligned_cols=199 Identities=10% Similarity=-0.073 Sum_probs=131.4
Q ss_pred HhhccCCchhHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhc-------CCCCCC--hhhHHHHH
Q 044812 266 TCSSLIGLSGGKQIHGFAIRK----ELNH-DVSLCNALIDMYSKCGSLDCARRVFED-------SSFNKD--AITWSSIV 331 (547)
Q Consensus 266 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~--~~~~~~li 331 (547)
.+...|++++|...+.+..+. +.++ ...+|+.+..+|.+.|++++|+..|++ .+ .+. ..+++.+.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg 124 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-QFRRGANFKFELG 124 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 344556666666666555542 2111 145677788888888888888877764 22 221 34678888
Q ss_pred HHHHhc-CChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCch-----hHHHH
Q 044812 332 SGYGLH-GKGHEAVLLYNKMVCLGSKP-D----IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT-----EICAC 400 (547)
Q Consensus 332 ~~~~~~-~~~~~a~~~~~~m~~~g~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~ 400 (547)
..|... |++++|+..|++..+..... + ..++..+...+...|++++|...|++..+...-.+.. ..+..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888886 99999999999887641110 1 3567888888999999999999999987652111121 15677
Q ss_pred HHHHhHhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 401 VVDMLGRAGQLDRALDFIKTM-PVEPSPS------IWGALVSASV--MHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
+..++...|++++|...+++. .+.|+.. .+..++.++. ..+++++|+..|+++.+++|.....+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 788888999999999999987 4445422 3444555554 456788888888887777775443333
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=1.7e-09 Score=98.49 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=147.1
Q ss_pred hcCChhHHHHHHHHhhh-------CCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHh------CC-CCchhHHHHHH
Q 044812 98 KNHGHNEALELFSNMYY-------SNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKI------GF-VVDVILANSLM 163 (547)
Q Consensus 98 ~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l~ 163 (547)
..|++++|+..|++..+ ...+....++..+...+...|++++|...++.+++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666655555543 121223456777888888888888888888887765 21 23456788899
Q ss_pred HHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC----CChhhHHHHHHHHHHCCCHHH
Q 044812 164 SMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR----RNVYAWTAMINGYVQNGDLDE 239 (547)
Q Consensus 164 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 239 (547)
.+|...|++++|...|++. .+++..... ....+|..+...|...|++++
T Consensus 93 ~~~~~~g~~~~A~~~~~~a---------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 145 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRA---------------------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHH---------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHH---------------------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998773 333333211 235678888888999999999
Q ss_pred HHHHHHHchhcC------CCCC-ChHHHHhHHHHhhccCCchhHHHHHHHHHHc-------CCCC-chhHHHHHHHHHHh
Q 044812 240 ALVLFLEMQLKD------RIEP-NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK-------ELNH-DVSLCNALIDMYSK 304 (547)
Q Consensus 240 A~~~~~~m~~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~ 304 (547)
|+..+++. ... +..| ...++..+...+...|++++|...++.+.+. ...+ ....+..+...+..
T Consensus 146 A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 146 VEYYYRRA-LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHH-HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 99998887 332 1122 3456778888888999999999998888764 1122 23334434333333
Q ss_pred cC------CHHHHHHHHhcCCCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 044812 305 CG------SLDCARRVFEDSSFN-K-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCL 353 (547)
Q Consensus 305 ~g------~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 353 (547)
.+ .+..+...++..+.. | ...++..+...|...|++++|..+|++..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 225 KDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp TCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 244455555554411 2 2346888899999999999999999988753
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=2.9e-08 Score=89.17 Aligned_cols=181 Identities=10% Similarity=0.070 Sum_probs=131.7
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044812 276 GKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SFNK---DAITWSSIVSGYGLHGKGHEAVLLYNKMV 351 (547)
Q Consensus 276 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 351 (547)
+...+++..+.+ .++..++..+..++...|++++|++++.+. +..| +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555444 344555567888899999999999999873 4333 45567788899999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHHH--hc--cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-
Q 044812 352 CLGSKP-----DIITIVGVLSAC--GR--SGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM- 421 (547)
Q Consensus 352 ~~g~~p-----~~~~~~~l~~~~--~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 421 (547)
+. .| +..+...|..++ .. .+++.+|..+|+++... .|+......++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 66 356666666663 32 34899999999998754 354333344445889999999999999865
Q ss_pred CC----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 422 PV----------EP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 422 ~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
.. .| |+.++..++......|+ +|.++++++.+..|++|.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 24 45577677766677787 88999999999999887543
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=6.4e-10 Score=90.50 Aligned_cols=141 Identities=9% Similarity=-0.013 Sum_probs=101.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC
Q 044812 332 SGYGLHGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ 410 (547)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 410 (547)
..+...|++++|+..+...... .|+ ...+..+...|...|++++|++.|++..+.. +-+...|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 3445566777777777766543 332 3345566777778888888888888777542 2366777788888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 411 LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLA-YKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 411 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
+++|...|++. ...| +...|..+...|.+.|+.++|.+. ++++++++|.++.+|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888776 3445 466888888888888888766554 588999999999888888888887775
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=2.1e-08 Score=79.53 Aligned_cols=131 Identities=19% Similarity=0.300 Sum_probs=102.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677778888888888888888887753 2356677777888888888888888888887642 33566777888888
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 406 GRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
...|++++|...++++ .. ..+..++..+...+...|++++|...++++.+.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888999988888876 22 235678888888999999999999999999888775
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=4.5e-08 Score=84.76 Aligned_cols=162 Identities=9% Similarity=-0.010 Sum_probs=124.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHHhcCCCCchhH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG----LINEGLEIYNSVINTYRIKPTTEI 397 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~ 397 (547)
.+...+..+...|...+++++|..+|++..+.| +...+..|...|.. + ++++|.+.|++..+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456667777777777788888888888877765 45666666666766 5 788888888887653 25566
Q ss_pred HHHHHHHhHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 398 CACVVDMLGR----AGQLDRALDFIKTM-PVEPS---PSIWGALVSASVM----HGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 398 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
+..|...|.. .+++++|..+|++. ...|. ...+..|...|.. .++.++|...|+++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6677777766 77889999988887 33342 6788888888888 78999999999999888 56677889
Q ss_pred HHHHHHHcC-C-----CHHHHHHHHHHHHhCCC
Q 044812 466 SLSNLYASS-R-----RWDAVAELRTMMKDRGL 492 (547)
Q Consensus 466 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 492 (547)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999998764 3 89999999999887764
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=2.4e-08 Score=91.14 Aligned_cols=163 Identities=8% Similarity=-0.053 Sum_probs=128.8
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 321 NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 321 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
+.+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++... .|+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~ 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQG 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHH
Confidence 344456677778888889999999999988875 34 5677888888899999999999999988654 45443322
Q ss_pred -HHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHcC
Q 044812 400 -CVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLSNLYASS 474 (547)
Q Consensus 400 -~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 474 (547)
.....+...++.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ...+..++.+|...
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2233356677788888888776 3344 56789999999999999999999999999999987 78899999999999
Q ss_pred CCHHHHHHHHHHHH
Q 044812 475 RRWDAVAELRTMMK 488 (547)
Q Consensus 475 g~~~~A~~~~~~m~ 488 (547)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999999888754
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.90 E-value=1.3e-08 Score=82.23 Aligned_cols=102 Identities=8% Similarity=-0.025 Sum_probs=89.1
Q ss_pred CCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 044812 390 RIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466 (547)
Q Consensus 390 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 466 (547)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++.+|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3345 4567778888889999999999999887 3345 67789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 467 LSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
++.+|.+.|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.3e-08 Score=104.79 Aligned_cols=169 Identities=11% Similarity=-0.068 Sum_probs=114.6
Q ss_pred HhcCCHHHHHHHHhc-C--------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 044812 303 SKCGSLDCARRVFED-S--------SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372 (547)
Q Consensus 303 ~~~g~~~~A~~~~~~-~--------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 372 (547)
...|++++|++.+++ + ...| +...+..+...|...|++++|...|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 566777777777764 2 2223 34566777777777777777777777777642 22456677777777777
Q ss_pred CcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 044812 373 GLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLA 449 (547)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 449 (547)
|++++|...|++..+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777654 33 56667777777777777777 7777765 2334 455777777777777788888877
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 450 YKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
|+++++.+|.+..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777777777777777766544
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=5.3e-09 Score=85.01 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=102.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 044812 365 VLSACGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHG 441 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 441 (547)
|...+...|++++|+..++.... ..| +...+..+...|.+.|++++|.+.|++. ...| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556778899999999998764 344 4566778899999999999999999987 4455 5779999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH-HHHHHhC
Q 044812 442 NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL-RTMMKDR 490 (547)
Q Consensus 442 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 490 (547)
++++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5776553
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=2.5e-08 Score=100.83 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=124.8
Q ss_pred cCCHHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044812 305 CGSLDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIY 382 (547)
Q Consensus 305 ~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 382 (547)
.|++++|...|++. ...| +...|..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999873 3344 46789999999999999999999999998863 235788899999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhC
Q 044812 383 NSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH---GNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 457 (547)
++..+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++... |+.++|.+.++++++.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9998752 336788999999999999999999999987 3344 567889999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 044812 458 PENPSNYVSLS 468 (547)
Q Consensus 458 ~~~~~~~~~l~ 468 (547)
|.+...|..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=1.7e-08 Score=84.63 Aligned_cols=157 Identities=8% Similarity=-0.014 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM- 404 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 404 (547)
+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++.+. .|+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 444555566666666666666665543 23 3455666666666677777777776666543 2233222221111
Q ss_pred hHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHcCCCHHHH
Q 044812 405 LGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN--PSNYVSLSNLYASSRRWDAV 480 (547)
Q Consensus 405 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 480 (547)
+...+...+|...+++. ...| +...+..+..++...|++++|...|+++++.+|.. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11222223456666654 3345 56788889999999999999999999999998764 55889999999999999999
Q ss_pred HHHHHHHH
Q 044812 481 AELRTMMK 488 (547)
Q Consensus 481 ~~~~~~m~ 488 (547)
...+++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 104
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=1.5e-08 Score=82.12 Aligned_cols=98 Identities=8% Similarity=0.031 Sum_probs=84.4
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++.+|.++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5566777888888999999999999876 3334 6778888999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 044812 472 ASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|.+.+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999886543
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=6.6e-08 Score=75.72 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSAS 437 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 437 (547)
..+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 455666667777777777777777776541 235667777777777777777777777765 2333 456777777888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
...|++++|++.|+++++++|.++.++..|..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888877777766654
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=5.8e-07 Score=82.27 Aligned_cols=160 Identities=9% Similarity=-0.041 Sum_probs=120.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHHH
Q 044812 329 SIVSGYGLHGKGHEAVLLYNKMVCLGS-KPDI----ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEICA 399 (547)
Q Consensus 329 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 399 (547)
..+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778888999999999998877421 2222 13334666777888999999999998763221223 33688
Q ss_pred HHHHHhHhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CchH
Q 044812 400 CVVDMLGRAGQLDRALDFIKTMP-------V-EPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------PSNY 464 (547)
Q Consensus 400 ~l~~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~ 464 (547)
.+...|...|++++|...++++- . .+. ..++..++..|...|++++|+..++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888761 1 122 3378889999999999999999999998864222 5578
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHH
Q 044812 465 VSLSNLYASSRR-WDAVAELRTMMK 488 (547)
Q Consensus 465 ~~l~~~~~~~g~-~~~A~~~~~~m~ 488 (547)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 699999988874
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=2e-07 Score=96.05 Aligned_cols=189 Identities=13% Similarity=0.043 Sum_probs=141.5
Q ss_pred hccCCchhHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhc
Q 044812 268 SSLIGLSGGKQIHGFAI--------RKELNHDVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLH 337 (547)
Q Consensus 268 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~ 337 (547)
...|++++|...++... +.. +.+...+..+..+|...|++++|+..|++. .. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 332 446677888899999999999999999862 22 34667888899999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 044812 338 GKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALD 416 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 416 (547)
|++++|...|++..+. .| +...+..+..++...|++++ ++.|+++.+.. +.+...|..+..++.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999885 34 46778888889999999999 99999988652 3367788899999999999999999
Q ss_pred HHHhC-CCCCCH-HHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhCCCCCc
Q 044812 417 FIKTM-PVEPSP-SIWGALVSASVMHGN-----SEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 417 ~~~~~-~~~p~~-~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 462 (547)
.|++. ...|+. ..+..+..++...++ .+...+..+...+..+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99987 566764 577777777766555 23334444444444444444
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.82 E-value=9.2e-08 Score=82.56 Aligned_cols=126 Identities=10% Similarity=0.073 Sum_probs=89.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (547)
+...|.+.|++++|...|++..+.. +-+...+..+..++...|++++|...|+++.+.. +.+...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHh
Confidence 7778888888888888888888753 2256778888888888888888888888887652 235677777777776555
Q ss_pred C--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 044812 410 Q--LDRALDFIKTMPVEPSP--SIWGALVSASVMHGNSEMQDLAYKSLIQLEPE 459 (547)
Q Consensus 410 ~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 459 (547)
. .+.+...++... .|+. ..+.....++...|++++|+..|+++++..|.
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3 345555665553 3333 34455566677788888888888888888885
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=1.1e-07 Score=82.44 Aligned_cols=125 Identities=10% Similarity=0.069 Sum_probs=86.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVM 439 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 439 (547)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|...+++. ... .+...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344455566666777766666542 345566666667777777777777776665 222 345677777778888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCC----------------chHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 440 HGNSEMQDLAYKSLIQLEPENP----------------SNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.|++++|+..++++.+..|.+. ..+..++.+|.+.|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888777666 677888888888888888888888776544
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=2.4e-07 Score=85.45 Aligned_cols=220 Identities=11% Similarity=0.051 Sum_probs=154.3
Q ss_pred HCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhc-cCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044812 233 QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS-LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCA 311 (547)
Q Consensus 233 ~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 311 (547)
..|++++|.+++++. .+. .+.. +.+ .++++.|...|..+ ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a-~k~-~~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKA-EKY-LKTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHH-HHH-HCCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHH-HHH-cccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 357788999998877 331 1111 122 46677777666543 4567788999988
Q ss_pred HHHHhc-------CCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCcHHH
Q 044812 312 RRVFED-------SSFNKD--AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS---KPD--IITIVGVLSACGRSGLINE 377 (547)
Q Consensus 312 ~~~~~~-------~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~l~~~~~~~g~~~~ 377 (547)
...|.+ .+ .+. ..+|+.+...|...|++++|...|++..+.-. .|. ..++..+...|.. |++++
T Consensus 56 ~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 56 KDAYLQEAEAHANNR-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 888764 23 221 34688888999999999999999988765311 121 3567788888888 99999
Q ss_pred HHHHHHHHHHhcCCCC----chhHHHHHHHHhHhcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHHcCCHHH
Q 044812 378 GLEIYNSVINTYRIKP----TTEICACVVDMLGRAGQLDRALDFIKTM-P---VEPS----PSIWGALVSASVMHGNSEM 445 (547)
Q Consensus 378 a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~~ 445 (547)
|+..|++..+...-.. ...++..+...|.+.|++++|+..|++. . ..++ ...+..++.++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998875421111 1467888899999999999999999876 1 1122 2366777778888899999
Q ss_pred HHHHHHHHHhhCCCCCch-----HHHHHHHHHcCCCHHHHHHH
Q 044812 446 QDLAYKSLIQLEPENPSN-----YVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 446 a~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~ 483 (547)
|...|++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999999 88865543 33455555 56777666663
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=1.3e-07 Score=95.51 Aligned_cols=148 Identities=11% Similarity=0.003 Sum_probs=101.2
Q ss_pred cCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-ChhhHHHHHHHHHhcCChHHHHHHH
Q 044812 270 LIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED-SSFNK-DAITWSSIVSGYGLHGKGHEAVLLY 347 (547)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 347 (547)
.|++++|...+++..+.. +.+...+..+...|...|++++|.+.|++ +...| +...+..+...|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467788888888877654 44567788888888888999999888876 23333 4667888888888889999999988
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc---CCHHHHHHHHHhC
Q 044812 348 NKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA---GQLDRALDFIKTM 421 (547)
Q Consensus 348 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 421 (547)
++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888753 2356778888888888899999999888887652 23567778888888888 8888888888876
No 112
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=9.7e-06 Score=79.59 Aligned_cols=125 Identities=11% Similarity=0.039 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 325 ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSAC-GRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 325 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
..|...+..+.+.++.+.|..+|.+. .. ..++...|......- ...++.+.|..+|+...+.++ -++..+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 34666666666778899999999988 32 123444443222211 123368999999999887643 23455666777
Q ss_pred HhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 404 MLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..++++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788899999999999984 3567888888877888999999998888875
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.79 E-value=2e-07 Score=81.59 Aligned_cols=187 Identities=10% Similarity=-0.056 Sum_probs=131.1
Q ss_pred ChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhcC-CCCCCh----hhHH
Q 044812 256 NKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNH--DVSLCNALIDMYSKCGSLDCARRVFEDS-SFNKDA----ITWS 328 (547)
Q Consensus 256 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~ 328 (547)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|++. ...|+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34456667788999999999999999999864221 2357788999999999999999999872 223332 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhc
Q 044812 329 SIVSGYGL------------------HGKGHEAVLLYNKMVCLGSKPDII-TIVGVLSACGRSGLINEGLEIYNSVINTY 389 (547)
Q Consensus 329 ~li~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 389 (547)
.+..++.. .|++++|...|++.++. .|+.. ..... .....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~--------------~~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDAT--------------KRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHH--------------HHHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHH--------------HHHHHHHHH-
Confidence 55555554 57899999999999885 45432 21111 111111110
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCch
Q 044812 390 RIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSN 463 (547)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 463 (547)
.......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|.+...
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112234677888999999999999987 33343 2468889999999999999999999998888876543
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=3.3e-07 Score=79.30 Aligned_cols=174 Identities=8% Similarity=-0.105 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHHH
Q 044812 275 GGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHG----KGHEAVLLYNKM 350 (547)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m 350 (547)
+|.+.|+...+.| +...+..+...|...+++++|...|++.--.-+...+..|...|.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4556666666665 6677888888888899999999999874313466777888888877 6 899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHhHh----cCCHHHHHHHHH
Q 044812 351 VCLGSKPDIITIVGVLSACGR----SGLINEGLEIYNSVINTYRIKP---TTEICACVVDMLGR----AGQLDRALDFIK 419 (547)
Q Consensus 351 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~----~g~~~~A~~~~~ 419 (547)
.+.| +...+..|...|.. .+++++|.+.|++..+. .+ .+..+..|...|.. .+++++|..+|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8765 56677777777777 88999999999988754 33 26778888888888 789999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhCC
Q 044812 420 TM-PVEPSPSIWGALVSASVMH-G-----NSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 420 ~~-~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 458 (547)
+. ...++...+..|...|... | +.++|...|+++.+.+.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 3235666777888887753 3 89999999999988864
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.78 E-value=2e-07 Score=85.31 Aligned_cols=163 Identities=8% Similarity=-0.059 Sum_probs=117.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CCc--hh
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD-----IITIVGVLSACGRSGLINEGLEIYNSVINTYRI--KPT--TE 396 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~~ 396 (547)
.+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566677888888888888887776532211 122344555677888999999998887643111 111 44
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTMP----VEPS-----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE------NP 461 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~ 461 (547)
+++.+...|...|++++|...+++.- ..|+ ..++..++.+|...|++++|+..++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888889999999999998887751 1222 258888999999999999999999999876421 14
Q ss_pred chHHHHHHHHHcCCCHHHH-HHHHHHHH
Q 044812 462 SNYVSLSNLYASSRRWDAV-AELRTMMK 488 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 488 (547)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77777754
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=5.7e-08 Score=76.07 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=89.4
Q ss_pred CCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 044812 391 IKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467 (547)
Q Consensus 391 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 467 (547)
+.| ....+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 345 3466778889999999999999999987 3344 677999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC
Q 044812 468 SNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=1.7e-07 Score=77.33 Aligned_cols=127 Identities=6% Similarity=0.036 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSAS 437 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 437 (547)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++. ...| +...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445666667777888888888888777542 335677777888888888888888888776 2233 567888899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHcCCCHHHHHHHHHHHH
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL--YASSRRWDAVAELRTMMK 488 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~ 488 (547)
...|++++|...++++.+..|.++..+..+..+ +.+.|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999988887555554 788899999999988764
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.75 E-value=2.7e-06 Score=77.25 Aligned_cols=148 Identities=15% Similarity=0.172 Sum_probs=62.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC-----
Q 044812 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN--EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ----- 410 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 410 (547)
+++++++.+++++.+.. +-|...+..-.-.+...|.++ ++++.++++.+.. +-+...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhh
Confidence 34444444444444432 113333333333333334433 4444444444331 1233344333333333333
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhC---CCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 411 -LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNS-EMQDLAYKSLIQLE---PENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 411 -~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
++++++.++++ ...| |...|+.+...+.+.|+. +.+..+.+++.+.+ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 44444444443 1122 344455444444444442 22333444444333 44444555555555555555555555
Q ss_pred HHHHH
Q 044812 484 RTMMK 488 (547)
Q Consensus 484 ~~~m~ 488 (547)
++.+.
T Consensus 281 ~~~l~ 285 (306)
T 3dra_A 281 YDLLK 285 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=7.7e-07 Score=81.04 Aligned_cols=158 Identities=9% Similarity=-0.006 Sum_probs=81.8
Q ss_pred HHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCChhhHHHH-HHHHHhc
Q 044812 260 LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSS-FNKDAITWSSI-VSGYGLH 337 (547)
Q Consensus 260 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-i~~~~~~ 337 (547)
+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++.. ..|+....... ...+...
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh
Confidence 3344444444455555555555444443 3344556666666666666666666666532 23433322221 1224455
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 044812 338 GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDF 417 (547)
Q Consensus 338 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 417 (547)
++.+.|...+++..... +.+...+..+...+...|++++|...|+++.+...-..+...+..++..|...|+.++|...
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 55555666666665542 22455556666666666666666666666655421111244555555555555655555555
Q ss_pred HH
Q 044812 418 IK 419 (547)
Q Consensus 418 ~~ 419 (547)
++
T Consensus 278 ~r 279 (287)
T 3qou_A 278 YR 279 (287)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=2.1e-07 Score=74.69 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=83.1
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4455666777888889999999988876 3334 6678888999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 044812 472 ASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|.+.+++..+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887543
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.72 E-value=7.7e-06 Score=74.23 Aligned_cols=231 Identities=10% Similarity=-0.021 Sum_probs=168.7
Q ss_pred HHCCC-HHHHHHHHHHchhcCCCCCCh-HHHHhHHHHhhccC--CchhHHHHHHHHHHcCCCCchhHHHHHHHHH----H
Q 044812 232 VQNGD-LDEALVLFLEMQLKDRIEPNK-VSLVSVLPTCSSLI--GLSGGKQIHGFAIRKELNHDVSLCNALIDMY----S 303 (547)
Q Consensus 232 ~~~~~-~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 303 (547)
.+.|. .++|+++++.+ .. +.|+. ..|+.--.++...+ +++++...++.+...+ +-+..+|+.-..++ .
T Consensus 43 ~~~~e~s~~aL~~t~~~-L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 43 MKAEEYSERALHITELG-IN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHTTCCSHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHH-HH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHH
Confidence 34444 46788888877 44 45544 34555566666666 7888888888888765 44455555444444 4
Q ss_pred hc---CCHHHHHHHHhcC---CCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-
Q 044812 304 KC---GSLDCARRVFEDS---SFNKDAITWSSIVSGYGLHGKGH--EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL- 374 (547)
Q Consensus 304 ~~---g~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~- 374 (547)
.. +++++++.+++++ . +.|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...++.-...+...+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG
T ss_pred hccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 44 7888998888763 3 567778888877788888888 999999999987533 66677666666666666
Q ss_pred -----HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCH
Q 044812 375 -----INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR-ALDFIKTM-PV----EPSPSIWGALVSASVMHGNS 443 (547)
Q Consensus 375 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~ 443 (547)
++++++.++.++... +-|...|+.+...+.+.|+..+ +..+.+++ .. ..++..+..+..++.+.|+.
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred chhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 899999999988752 4478889888888888887444 55677765 21 34677899999999999999
Q ss_pred HHHHHHHHHHHh-hCCCCCchHHHHHHH
Q 044812 444 EMQDLAYKSLIQ-LEPENPSNYVSLSNL 470 (547)
Q Consensus 444 ~~a~~~~~~~~~-~~~~~~~~~~~l~~~ 470 (547)
++|+++++.+.+ .+|.....|...+..
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 999999999997 699888777766554
No 122
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=4.8e-07 Score=78.00 Aligned_cols=186 Identities=10% Similarity=0.024 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH-HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044812 223 AWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV-SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDM 301 (547)
Q Consensus 223 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (547)
.+-.....+...|++++|+..|++. .. ..|+.. .+.. . . .... ..........+..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~~-~-~---~~~~--------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQT-IA--LNIDRTEMYYW-T-N---VDKN--------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCHHHHHHHHH-H-H---SCTT--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-HH--hCCCChHHHHH-h-h---hcch--------------hhhhHHHHHHHHHH
Confidence 3444566777889999999988887 33 233322 1111 0 0 0000 00112233447778
Q ss_pred HHhcCCHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCc--HH
Q 044812 302 YSKCGSLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKP-DIITIVGVLSACGRSGL--IN 376 (547)
Q Consensus 302 ~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~--~~ 376 (547)
|.+.|++++|+..|++ +.. +.+...+..+...|...|++++|...|++..+. .| +...+..+..++...|. ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHH
Confidence 8888888888888876 222 345667888888888888888888888888875 34 46677777777655543 34
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVS 435 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 435 (547)
.+...++... ...|....+.....++...|++++|...|++. ...|+......+..
T Consensus 142 ~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 142 KLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4455555443 22232333444555666778888888888876 56787665554443
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.72 E-value=3e-07 Score=71.56 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|..+++++ .. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4456666666777777777777777776542 235566677777777777777777777765 22 2356678888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSR 475 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (547)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999888888888888887776543
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=4.3e-07 Score=75.94 Aligned_cols=158 Identities=11% Similarity=0.059 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHH
Q 044812 159 ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLD 238 (547)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 238 (547)
+..+...+...|++++|...|++..+.++ .+...+..+...+...|+++
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-------------------------------~~~~a~~~la~~~~~~g~~~ 57 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-------------------------------SRGDVKLAKADCLLETKQFE 57 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-------------------------------TSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------------------------------CcHHHHHHHHHHHHHCCCHH
Confidence 44455667777777777777777654322 35667788888888888888
Q ss_pred HHHHHHHHchhcCCCCCChHHHHhHHHH-hhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 044812 239 EALVLFLEMQLKDRIEPNKVSLVSVLPT-CSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED 317 (547)
Q Consensus 239 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (547)
+|+..|+.. .. ..|+.......... +...+....+...++...+.. +.+...+..+..++...|++++|...|++
T Consensus 58 ~A~~~~~~a-~~--~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 58 LAQELLATI-PL--EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp HHHHHHTTC-CG--GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHh-hh--ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 888888877 33 22333222221111 112223334556666665543 33455666666666666666666666655
Q ss_pred -CCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 044812 318 -SSFNKD---AITWSSIVSGYGLHGKGHEAVLLYNKMV 351 (547)
Q Consensus 318 -~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~ 351 (547)
+...|+ ...+..+...+...|+.++|...|++..
T Consensus 134 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 134 ILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 222332 3356666666666666666666666543
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=1.1e-06 Score=76.11 Aligned_cols=145 Identities=7% Similarity=-0.072 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 044812 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL 374 (547)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 374 (547)
+..+...+...|++++|...|++.- .|+...|..+...|...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 4455666667777777777777654 5666667777777777777777777777766642 2245566666666777777
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPS-PSIWGALVSASVMHGNSEMQDLAYKSL 453 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 453 (547)
+++|.+.|++..+...-.+... +...|. ...|+ ...+..+..++...|++++|.+.++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777776654311111000 000000 12333 357888899999999999999999999
Q ss_pred HhhCCCC
Q 044812 454 IQLEPEN 460 (547)
Q Consensus 454 ~~~~~~~ 460 (547)
++..|.+
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9998865
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.69 E-value=2.5e-07 Score=72.67 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 4556666677777788888888887776542 235667777777888888888888888775 2233 46688888889
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCH
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRW 477 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 477 (547)
+...|++++|...++++.+..|.++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998888999999998888765
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=2.5e-07 Score=72.98 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++. ... .+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4455555556666666666666666655321 224555666666666666666666666654 222 346677888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
+...|++++|...++++.+..|.+...+..++.++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999998888888888888888876654
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.66 E-value=1.2e-07 Score=79.53 Aligned_cols=120 Identities=10% Similarity=0.076 Sum_probs=83.7
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--H
Q 044812 370 GRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSA-SVMHGNS--E 444 (547)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~ 444 (547)
...|++++|...++...+.. +.+...+..+...|...|++++|...|++. ...| +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 44566777777777766542 235566777777777777777777777765 2223 55567777777 6677887 8
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 445 MQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 445 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+|...++++++.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888877654
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=2.4e-07 Score=86.47 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHhHhcCCHHHHHHHHHhC-C
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----------------TEICACVVDMLGRAGQLDRALDFIKTM-P 422 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 422 (547)
..+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++. .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555666666655555543 122 467888889999999999999999887 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHH-HHHHHHHH
Q 044812 423 VEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAV-AELRTMMK 488 (547)
Q Consensus 423 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 488 (547)
..| +...|..+..+|...|++++|+..|+++++.+|.++.++..++.++.+.|++++| ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334 6778999999999999999999999999999999999999999999999999998 45666663
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=1.1e-07 Score=86.24 Aligned_cols=193 Identities=7% Similarity=-0.044 Sum_probs=125.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSA 368 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 368 (547)
+...+..+...+.+.|++++|...|++. .. +.+...|..+...|...|++++|...+++..+.. +-+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445666777777888888888888752 22 3356677788888888888888888888887752 2246677778888
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKPTT-EICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
+...|++++|...|++..+. .|+. ..+...+....+......... .......++......+... ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 88888888888888877654 2211 111111111111111111111 2222333444444444332 368999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Q 044812 448 LAYKSLIQLEPENPSNYVSLSNLYASS-RRWDAVAELRTMMKDR 490 (547)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 490 (547)
+.++++.+.+|.+......+...+.+. +.+++|.++|....+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777776 7799999999987653
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=4.7e-06 Score=76.14 Aligned_cols=160 Identities=8% Similarity=-0.008 Sum_probs=121.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC-C---CCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 044812 297 ALIDMYSKCGSLDCARRVFEDSS-F---NKDA----ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-PD----IITIV 363 (547)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~~-~---~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~ 363 (547)
..+..+...|++++|..++++.. . .|+. ..+..+...+...+++++|...+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677889999999999998621 1 1221 12334667777888999999999999884322 22 34688
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhc----CCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 044812 364 GVLSACGRSGLINEGLEIYNSVINTY----RIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-------PVEPS-PSIW 430 (547)
Q Consensus 364 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 430 (547)
.+..+|...|++++|...|+++.+.. +..+ ...++..+...|.+.|++++|...+++. ...+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999987521 1112 2347888999999999999999998876 12233 5689
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhh
Q 044812 431 GALVSASVMHGN-SEMQDLAYKSLIQL 456 (547)
Q Consensus 431 ~~l~~~~~~~~~-~~~a~~~~~~~~~~ 456 (547)
..++.++...|+ .++|.+.++++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 69999999998865
No 132
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=3.2e-06 Score=83.03 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc-CCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA-GQLDRALDFIKTM-PVEP-SPSIWGALVSA 436 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 436 (547)
..|...+....+.+..+.|..+|+.+ +.. ..+...|...+..-... ++.+.|..+|+.. ..-| +...|...+.-
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 44566666666778899999999988 431 22444554333332333 3699999999876 1123 34556677777
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
....|+.+.|..+|+++ +.....|...+..-...|+.+.+.++++++..
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78899999999999998 23566788888888888999999998888763
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=3.2e-07 Score=71.81 Aligned_cols=96 Identities=9% Similarity=0.030 Sum_probs=77.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566677777888888888888776 2233 56788888888888999999999999999999888888899999999
Q ss_pred cCCCHHHHHHHHHHHHhC
Q 044812 473 SSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~ 490 (547)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999988887654
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=2.5e-07 Score=85.36 Aligned_cols=197 Identities=9% Similarity=-0.033 Sum_probs=147.7
Q ss_pred ccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 044812 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYN 348 (547)
Q Consensus 269 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 348 (547)
..|++++|..++++..+... .. .+...++++.|...|++. ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHH
Confidence 35677888888887776432 11 011147788888877654 456788999999999998
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC--CC--chhHHHHHHHHhHhcCCHHHHHHHHH
Q 044812 349 KMVCL----GSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRI--KP--TTEICACVVDMLGRAGQLDRALDFIK 419 (547)
Q Consensus 349 ~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 419 (547)
+..+. |-.+ -..+|..+...|...|++++|...|++..+.+.- .+ ...++..+...|.. |++++|+..++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87654 2111 1457888889999999999999999987654211 11 24677888889988 99999999998
Q ss_pred hC-CCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHcCCCHHHHHHHHH
Q 044812 420 TM-PVE---PS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP------SNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 420 ~~-~~~---p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
+. .+. .+ ..++..+...+...|++++|+..|+++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76 111 11 45788899999999999999999999998765443 266778888899999999999999
Q ss_pred HHH
Q 044812 486 MMK 488 (547)
Q Consensus 486 ~m~ 488 (547)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.60 E-value=3.6e-07 Score=69.53 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=81.8
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCchHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVE-PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPE--NPSNYVSLSN 469 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 469 (547)
+...+..+...+...|++++|...+++. ... .+...|..+..++...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556666777788888888888888776 222 35668888888999999999999999999999998 8889999999
Q ss_pred HHHcC-CCHHHHHHHHHHHHhCCC
Q 044812 470 LYASS-RRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 470 ~~~~~-g~~~~A~~~~~~m~~~~~ 492 (547)
++... |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999876654
No 136
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.60 E-value=1.3e-06 Score=71.95 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455556666666666666666666665431 224555566666666666666666666554 2223 34456666666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHH
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVS 466 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 466 (547)
+...|++++|+..|+++++.+|.++..+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 666666666666666666666666554433
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.58 E-value=3.3e-06 Score=77.13 Aligned_cols=164 Identities=7% Similarity=-0.004 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhc-CCCCC-Ch------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--H
Q 044812 293 SLCNALIDMYSKCGSLDCARRVFED-SSFNK-DA------ITWSSIVSGYGLHGKGHEAVLLYNKMVCLGS---KPD--I 359 (547)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~ 359 (547)
..+...+..+...|++++|.+.+++ +...+ .. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455677788899999999999864 11112 11 2244456677888999999999999876421 122 4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHhHhcCCHHHHHHHHHhC-C------CCC-C
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT-----TEICACVVDMLGRAGQLDRALDFIKTM-P------VEP-S 426 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~ 426 (547)
.+++.+...|...|++++|...|++..+.....|+ ..++..+...|...|++++|...+++. . ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999999998732111222 257888999999999999999999876 1 111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 044812 427 PSIWGALVSASVMHGNSEMQ-DLAYKSLIQL 456 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 456 (547)
..+|..+..+|...|++++| ...++++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56889999999999999999 8888888764
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=7.7e-07 Score=78.86 Aligned_cols=135 Identities=11% Similarity=-0.014 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHh
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT--TEICACVVDML 405 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 405 (547)
..+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556677777888888877777654 344334455555677788888888888755321 1 111 23566677778
Q ss_pred HhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 044812 406 GRAGQLDRALDFIKTMP---VEPS--PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSL 467 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 467 (547)
.+.|++++|+..|++.. ..|. ...+.....++.+.|+.++|..+|+++...+|. +..+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 88888888888888762 1143 335666777788888888888888888888886 5555554
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.4e-06 Score=74.55 Aligned_cols=152 Identities=9% Similarity=-0.012 Sum_probs=82.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCC-chhHHHHHHHHhHhcCCHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTY---RIKP-TTEICACVVDMLGRAGQLD 412 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~ 412 (547)
.|++++|.+.++..... .......+..+...+...|++++|...+++..+.. +..+ ....+..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555533322221 11123445555555555555555555555544311 1111 2344555566666666666
Q ss_pred HHHHHHHhC-C---CCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCC----chHHHHHHHHHcCCCH
Q 044812 413 RALDFIKTM-P---VEP-S----PSIWGALVSASVMHGNSEMQDLAYKSLIQLE--PENP----SNYVSLSNLYASSRRW 477 (547)
Q Consensus 413 ~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~ 477 (547)
+|...+++. . ..+ + ...+..+...+...|++++|...++++++.. ..++ .++..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666544 0 011 1 2356667777777788888888777776542 1121 2346777888888888
Q ss_pred HHHHHHHHHHHh
Q 044812 478 DAVAELRTMMKD 489 (547)
Q Consensus 478 ~~A~~~~~~m~~ 489 (547)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777643
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=7.8e-07 Score=71.77 Aligned_cols=101 Identities=9% Similarity=-0.022 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|...|+++.+.. +.+...|..+..+|...|++++|+..|++. ...| +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3456666677777888888888888877542 236777777888888888888888888776 3334 45678888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
|...|++++|+..|+++++..|+++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888999999999999888887653
No 141
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.54 E-value=3.7e-07 Score=70.77 Aligned_cols=95 Identities=12% Similarity=0.022 Sum_probs=82.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (547)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4555677888999999999999887 3345 6778999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 044812 475 RRWDAVAELRTMMKDRG 491 (547)
Q Consensus 475 g~~~~A~~~~~~m~~~~ 491 (547)
|++++|.+.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.53 E-value=1e-06 Score=70.03 Aligned_cols=99 Identities=8% Similarity=-0.015 Sum_probs=80.6
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 393 PTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 393 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
.+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777777788888888888888765 2233 466888888888999999999999999999999888899999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCC
Q 044812 471 YASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~~~ 491 (547)
|...|++++|.+.+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999998886543
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=5.4e-07 Score=72.76 Aligned_cols=115 Identities=9% Similarity=-0.001 Sum_probs=90.3
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCC
Q 044812 347 YNKMVCLGSKP-DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVE 424 (547)
Q Consensus 347 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 424 (547)
|+++.. +.| +...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|++. ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 344 34566777778888999999999999887652 336778888888999999999999999886 333
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHH
Q 044812 425 P-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 425 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 465 (547)
| +...+..+..++...|++++|+..|+++++..|.++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 4 5668888999999999999999999999999988776543
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=2e-06 Score=65.88 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSAS 437 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 437 (547)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344445555555666666666666555431 224455555555566666666666666554 1222 345666666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
...|++++|...++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666677777777776666666666555555544
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.50 E-value=9.3e-07 Score=75.51 Aligned_cols=96 Identities=14% Similarity=0.045 Sum_probs=73.3
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
..+..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|+..|+++++..|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888888889999998888876 2234 567889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHhCC
Q 044812 474 SRRWDAVA-ELRTMMKDRG 491 (547)
Q Consensus 474 ~g~~~~A~-~~~~~m~~~~ 491 (547)
.|+.+++. ..++.|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888877 5566665443
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.50 E-value=1.5e-06 Score=76.98 Aligned_cols=127 Identities=11% Similarity=-0.009 Sum_probs=102.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSP----SIWGALVSAS 437 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~ 437 (547)
...+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 344566788899999999999988643 454336666777889999999999999977444433 3678889999
Q ss_pred HHcCCHHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 438 VMHGNSEMQDLAYKSLIQLE--PE-NPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++....
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999998533 33 34578899999999999999999999998754
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=1.6e-06 Score=74.25 Aligned_cols=154 Identities=10% Similarity=-0.017 Sum_probs=98.1
Q ss_pred HhcCCHHHHHH---HHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCc
Q 044812 303 SKCGSLDCARR---VFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL----GSKP-DIITIVGVLSACGRSGL 374 (547)
Q Consensus 303 ~~~g~~~~A~~---~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~ 374 (547)
...|++++|.+ .+.... ......+..+...+...|++++|...+++..+. +..| ....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 34567777777 443322 223456677777777778888887777776552 2222 24556667777778888
Q ss_pred HHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcC
Q 044812 375 INEGLEIYNSVINTYRIKP-----TTEICACVVDMLGRAGQLDRALDFIKTM----PVEPS----PSIWGALVSASVMHG 441 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~ 441 (547)
+++|.+.+++..+...-.+ ....+..+...+...|++++|...+++. ...++ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 8888888877655311111 2345667777888888888888887765 11122 234577788888899
Q ss_pred CHHHHHHHHHHHHhhC
Q 044812 442 NSEMQDLAYKSLIQLE 457 (547)
Q Consensus 442 ~~~~a~~~~~~~~~~~ 457 (547)
++++|.+.++++.+..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999888887653
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=1.3e-06 Score=73.12 Aligned_cols=127 Identities=9% Similarity=0.051 Sum_probs=99.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-hHhcCCH--
Q 044812 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDM-LGRAGQL-- 411 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 411 (547)
...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888887753 3367788888889999999999999999987652 3366777788888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 412 DRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 412 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
++|...+++. ...| +...+..+..++...|++++|...++++++..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887 3334 567888899999999999999999999999999876544
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=1.4e-06 Score=67.58 Aligned_cols=97 Identities=18% Similarity=0.298 Sum_probs=87.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
...+..+...+...|++++|...++++ .. ..+..++..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 22 3467789999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhCC
Q 044812 473 SSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~ 491 (547)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987643
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=1.6e-06 Score=66.57 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=87.4
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
....+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++.+..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3556777888999999999999999987 3334 6778999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 044812 472 ASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987653
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.7e-06 Score=67.57 Aligned_cols=111 Identities=5% Similarity=-0.112 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSAS 437 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 437 (547)
..+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 455666667777888888888888777542 335677777888888888888888888776 3334 466888888999
Q ss_pred HHcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHH
Q 044812 438 VMHGNSEMQDLAYKSLIQLE------PENPSNYVSLSNLYA 472 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~ 472 (547)
...|++++|...|+++++.+ |.++..+..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999888 777777766666543
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=1.4e-06 Score=68.57 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=89.0
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 393 PTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 393 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
.+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|++++|+..++++.+..|.++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888999999999999999999987 4445 677899999999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHhC
Q 044812 471 YASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 471 ~~~~g~~~~A~~~~~~m~~~ 490 (547)
+.+.|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.47 E-value=1.3e-06 Score=69.93 Aligned_cols=108 Identities=9% Similarity=0.044 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSA 436 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 436 (547)
...+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|...|++. ...| +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3455566667788888888888888887652 336777888888888889999998888876 2334 55678888999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 437 SVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 437 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
+...|++++|+..|+++++..|.++.......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 99999999999999999999988876655443
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=3.8e-06 Score=67.50 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 044812 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWG 431 (547)
Q Consensus 358 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 431 (547)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3445555555666666666666666665532 343 455566666666667777776666654 2223 455677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
.+..++...|++++|...|+++++..|.++..+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777888888888888888888888877776666665543
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=9.6e-07 Score=69.11 Aligned_cols=94 Identities=4% Similarity=-0.015 Sum_probs=66.7
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-------hHHH
Q 044812 396 EICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPS-------NYVS 466 (547)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~ 466 (547)
..+..+...+.+.|++++|+..|++. .+.| +...|..+..+|...|++++|++.++++++++|.++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34555666777777777777777765 3334 4567777888888888888888888888877665543 5666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh
Q 044812 467 LSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
++.++...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777788888888888877654
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=2.8e-06 Score=69.98 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=42.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (547)
.+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++.+|.++..|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444444444444444444444443 1122 3334444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 044812 475 RRWDAVAELRTMMK 488 (547)
Q Consensus 475 g~~~~A~~~~~~m~ 488 (547)
|++++|.+.+++..
T Consensus 93 g~~~~A~~~~~~al 106 (164)
T 3sz7_A 93 ADYKGAKEAYEKGI 106 (164)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444443
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=2.2e-06 Score=68.92 Aligned_cols=97 Identities=9% Similarity=-0.002 Sum_probs=88.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLS 468 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 468 (547)
+...+..+...+...|++++|...|++. ...|+ ...|..+..++...|++++|+..++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5677888899999999999999999987 56677 578899999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC
Q 044812 469 NLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999998764
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.41 E-value=6.6e-06 Score=67.62 Aligned_cols=128 Identities=14% Similarity=-0.014 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
.+..+...+...|++++|...|.+..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 35556666777777777777777776642 2246667777777777788888888877776542 33566777777777
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 406 GRAGQLDRALDFIKTM-PVEP-SPSIWG--ALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
...|++++|...+++. ...| +...+. ..+..+...|++++|+..+++..+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8888888888887776 2223 334443 3333466778888888888776543
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.39 E-value=3.2e-06 Score=66.17 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=87.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++.+..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 5667788889999999999999999987 2334 6778999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 044812 472 ASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 472 ~~~g~~~~A~~~~~~m~~~~ 491 (547)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999987653
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.38 E-value=1.6e-06 Score=69.24 Aligned_cols=64 Identities=6% Similarity=-0.104 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCCchH----HHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQL-------EPENPSNY----VSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
...|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 348899999999999999999999999999 99999999 99999999999999999999988653
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=3.9e-06 Score=66.54 Aligned_cols=111 Identities=10% Similarity=-0.086 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 044812 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVS 435 (547)
Q Consensus 358 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 435 (547)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 46667777777777778888887777776542 235667777777788888888888887766 2233 5668888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-----CCchHHHHHHH
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPE-----NPSNYVSLSNL 470 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~ 470 (547)
++...|++++|+..|+++++..|. +......+..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 889999999999999999888766 44444444444
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.34 E-value=4.4e-06 Score=81.50 Aligned_cols=131 Identities=7% Similarity=0.075 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-------------chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-------------TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP 425 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 425 (547)
..+..+...+.+.|++++|...|++..+...-.+ ....|..+..+|.+.|++++|+..+++. ...|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3445555556666666666666666554311111 1577888899999999999999999887 3334
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHH-HHHHHHhC
Q 044812 426 -SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAE-LRTMMKDR 490 (547)
Q Consensus 426 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~~ 490 (547)
+...|..+..+|...|++++|+..|+++++++|.+..++..++.++.+.|+++++.+ .++.|..+
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577899999999999999999999999999999999999999999999999988774 45655433
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=1.9e-06 Score=67.51 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=57.3
Q ss_pred HHHHhHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHH
Q 044812 401 VVDMLGRAGQLDRALDFIKTM-PVEPS-P---SIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN---PSNYVSLSNLYA 472 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 472 (547)
+...+...|++++|...|++. ...|+ . ..+..+..++...|++++|...++++++..|.+ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555666666666666654 11222 1 355666667777777777777777777777766 555677777777
Q ss_pred cCCCHHHHHHHHHHHHhC
Q 044812 473 SSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~ 490 (547)
..|++++|.+.++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777776553
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.33 E-value=0.0001 Score=67.67 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH----
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ-------LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNS---- 443 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~---- 443 (547)
++++.++++.+.. +-|...|+.....+.+.++ ++++++.++++ ...| |...|+.+-..+.+.|+.
T Consensus 185 eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 185 SELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 5555555555431 2244555555444444443 45555555544 2223 445555555555544432
Q ss_pred ----------------HHHHHHHHHHHhhC------CCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 444 ----------------EMQDLAYKSLIQLE------PENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 444 ----------------~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
....+....+.... +.++.++..|+.+|...|+.++|.++++.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11222222222211 3556677788888888888888888888875
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=6.2e-06 Score=67.67 Aligned_cols=64 Identities=8% Similarity=0.111 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
...|..+..+|.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3577778888888888888888888888888888888888888888888888888888887654
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=2.5e-06 Score=83.65 Aligned_cols=118 Identities=7% Similarity=0.051 Sum_probs=92.7
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNS 443 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 443 (547)
...+...|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|...+++. ...| +...|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 334567788888888888887652 235778888888888888888888888876 3344 566888899999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHH--HHcCCCHHHHHHHHH
Q 044812 444 EMQDLAYKSLIQLEPENPSNYVSLSNL--YASSRRWDAVAELRT 485 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 485 (547)
++|++.++++++..|.++..+..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999888888888 888899999999887
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.9e-05 Score=76.58 Aligned_cols=163 Identities=6% Similarity=-0.081 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhc---CCCC-chhH
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPDI----ITIVGVLSACGRSGLINEGLEIYNSVINTY---RIKP-TTEI 397 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 397 (547)
+..+...|...|++++|.+.+..+...- ..++. ...+.+...+...|+.+.|..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667778888888888888887765431 11111 223334444566788888888887765421 1122 3567
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCC----Cc
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTM-------PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLE---PEN----PS 462 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~ 462 (547)
+..+...|...|++++|..++++. ..+|. ..++..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778889999999999999988765 11232 4478888899999999999999999988753 222 23
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 463 NYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567778888899999999888877643
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.27 E-value=1.3e-05 Score=62.72 Aligned_cols=104 Identities=10% Similarity=0.074 Sum_probs=72.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhcCCCCch---hHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 044812 364 GVLSACGRSGLINEGLEIYNSVINTYRIKPTT---EICACVVDMLGRAGQLDRALDFIKTM-PVEPS----PSIWGALVS 435 (547)
Q Consensus 364 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 435 (547)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...+++. ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34455667777777777777776542 1122 46666777777888888888887765 22233 456778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
++...|++++|...|+++++..|+++........
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8999999999999999999998887655544433
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.27 E-value=0.00077 Score=61.83 Aligned_cols=233 Identities=10% Similarity=0.011 Sum_probs=156.6
Q ss_pred HHHCCCHHHHHHHHHHchhcCCCCCCh-HHHHhHHHHhhccC-CchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-
Q 044812 231 YVQNGDLDEALVLFLEMQLKDRIEPNK-VSLVSVLPTCSSLI-GLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC-G- 306 (547)
Q Consensus 231 ~~~~~~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 306 (547)
..+.+..++|+++++.+ .. +.|+. ..|+.--..+...+ .++++...++.+.... +-+..+|+.-..++... +
T Consensus 64 ~~~~e~se~AL~lt~~~-L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 64 AAKEEKSERALELTEII-VR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHTTCCSHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHHHHHHHHHH-HH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 34445556788888877 44 34443 34555555555666 4788888888888765 45666777666666665 6
Q ss_pred CHHHHHHHHhcC-CC-CCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc--
Q 044812 307 SLDCARRVFEDS-SF-NKDAITWSSIVSGYGLHGKGH--------EAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL-- 374 (547)
Q Consensus 307 ~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-- 374 (547)
++++++++++++ .. ..|..+|+--.-.+.+.|.++ ++++.++++.+... -|...++.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 788888888763 22 345667766555555555555 89999999988743 367777777777777765
Q ss_pred -----HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCH--------------------HHHHHHHHhC-CC-----
Q 044812 375 -----INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQL--------------------DRALDFIKTM-PV----- 423 (547)
Q Consensus 375 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~----- 423 (547)
++++++.+++.+... +-|...|+.+-..+.+.|+. .+..++..++ ..
T Consensus 219 ~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 688899988887652 33777887777777666653 4445555454 11
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCCchHHHHHHH
Q 044812 424 --EPSPSIWGALVSASVMHGNSEMQDLAYKSLI-QLEPENPSNYVSLSNL 470 (547)
Q Consensus 424 --~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~ 470 (547)
.+....+..|+..|...|+.++|.++++.+. +.+|.....|...+..
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 2577789999999999999999999999997 5578766666655543
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=1.1e-05 Score=63.09 Aligned_cols=109 Identities=6% Similarity=0.015 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV----EPS----PSIWG 431 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 431 (547)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++. .. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34445555555556666666665555431 224445555555566666666666665554 11 122 55667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
.+..++...|++++|.+.++++.+..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777777888888888888888887776 4555555555443
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.26 E-value=8.9e-07 Score=68.17 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHH
Q 044812 409 GQLDRALDFIKTM-PV---EPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAEL 483 (547)
Q Consensus 409 g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (547)
|++++|+..|++. .. .|+ ...+..+..++...|++++|+..++++++..|.++.++..++.++...|++++|.+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445555555444 22 132 235555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHh
Q 044812 484 RTMMKD 489 (547)
Q Consensus 484 ~~~m~~ 489 (547)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=1.8e-05 Score=61.80 Aligned_cols=95 Identities=6% Similarity=-0.014 Sum_probs=52.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PV----EPS----PSIWGA 432 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 432 (547)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++. .+ .++ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444444555555555555555544321 123444555555555555555555555443 10 111 235666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC
Q 044812 433 LVSASVMHGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 433 l~~~~~~~~~~~~a~~~~~~~~~~~~ 458 (547)
++.++...|++++|++.|+++++..|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 77777888888888888888877766
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=4.2e-06 Score=65.47 Aligned_cols=96 Identities=10% Similarity=0.085 Sum_probs=84.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------CchHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PV-EPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN-------PSNYV 465 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~ 465 (547)
...+..+...+...|++++|...+++. .. ..+...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456777888999999999999999987 22 3467789999999999999999999999999987765 77899
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 466 SLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.++.++...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=8.7e-06 Score=61.56 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=64.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 044812 361 TIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP---SPSIWGALVSA 436 (547)
Q Consensus 361 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 436 (547)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 44455555666666666666666665431 224555666666667777777777776665 2233 46677777788
Q ss_pred HHHc-CCHHHHHHHHHHHHhhCCCCC
Q 044812 437 SVMH-GNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 437 ~~~~-~~~~~a~~~~~~~~~~~~~~~ 461 (547)
+... |++++|.+.++++.+..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888777654
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=9.7e-06 Score=66.12 Aligned_cols=128 Identities=9% Similarity=-0.033 Sum_probs=73.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHhHhcCCHHHHHHHHHhC----CCCCC----HHH
Q 044812 362 IVGVLSACGRSGLINEGLEIYNSVINTYRIKPT----TEICACVVDMLGRAGQLDRALDFIKTM----PVEPS----PSI 429 (547)
Q Consensus 362 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~ 429 (547)
+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|...+++. +..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444445555555544444332100011 124445555555566666665555543 00111 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQLEP------ENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
+..+...+...|++++|.+.++++++..+ .....+..++.++...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66677777788888888888888776521 1234677788888888888888888887653
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.22 E-value=3.9e-06 Score=78.30 Aligned_cols=146 Identities=12% Similarity=0.030 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
.+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ ....|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHHHH
Confidence 3555566666777777777777776653 343321 22333333332211 123677788888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH-cCCCHHHHHH
Q 044812 406 GRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA-SSRRWDAVAE 482 (547)
Q Consensus 406 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~ 482 (547)
.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++.+|.++.++..|..+.. ..+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999888876 3334 56788888899999999999999999999999988888888887744 4567778888
Q ss_pred HHHHHHhCC
Q 044812 483 LRTMMKDRG 491 (547)
Q Consensus 483 ~~~~m~~~~ 491 (547)
++++|....
T Consensus 321 ~~~~~l~~~ 329 (338)
T 2if4_A 321 MYKGIFKGK 329 (338)
T ss_dssp ---------
T ss_pred HHHHhhCCC
Confidence 888876543
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.22 E-value=9.8e-06 Score=76.43 Aligned_cols=90 Identities=8% Similarity=-0.016 Sum_probs=79.8
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|++++++.|.++..+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5678888999999999999999999887 4555 5678999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHH
Q 044812 472 ASSRRWDAVAEL 483 (547)
Q Consensus 472 ~~~g~~~~A~~~ 483 (547)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888877653
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.22 E-value=2.1e-05 Score=73.28 Aligned_cols=128 Identities=11% Similarity=0.050 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCC
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPD--------------IITIVGVLSACGRSGLINEGLEIYNSVINTYRI 391 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 391 (547)
.+..+...|.+.|++++|...|++..+...... ...+..+..++.+.|++++|+..+++..+..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-- 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 445555555556666666666665555321111 3667777777788888888888888777542
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 044812 392 KPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQ-DLAYKSLIQ 455 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 455 (547)
+.+...+..+..+|...|++++|...|++. ...| +...+..+..++...|+.++| ...++++.+
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235677777788888888888888888776 3334 456777788888888888777 345565543
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.19 E-value=0.00052 Score=62.61 Aligned_cols=165 Identities=13% Similarity=0.031 Sum_probs=83.7
Q ss_pred ChhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHHhcCCCCchhHHH
Q 044812 323 DAITWSSIVSGYGLHG--KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL-INEGLEIYNSVINTYRIKPTTEICA 399 (547)
Q Consensus 323 ~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (547)
+..+|+.-...+...+ .+++++.++.++.+... -|...++.-.-.+...|. ++++++.+..+++.. +-|...|+
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~ 183 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWH 183 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHH
Confidence 4444444444444444 25555555555555421 134444443333444444 355555555555431 22444444
Q ss_pred HHHHHhHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHH
Q 044812 400 CVVDMLGRA--------------GQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH-----------GNSEMQDLAYKS 452 (547)
Q Consensus 400 ~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~ 452 (547)
.....+.+. +.++++++.+.+. ...| |...|+-+-..+.+. +.++++++.+++
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 443333332 3355666666554 2223 445555444444333 346777888888
Q ss_pred HHhhCCCCCchHHHHHHH---HHcCCCHHHHHHHHHHHHhC
Q 044812 453 LIQLEPENPSNYVSLSNL---YASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 453 ~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~ 490 (547)
+++..|++...+..++.. ....|..+++...+.++.+.
T Consensus 264 lle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 264 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 888888764433333222 22356677777777777653
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.18 E-value=0.00046 Score=62.98 Aligned_cols=231 Identities=12% Similarity=0.069 Sum_probs=153.5
Q ss_pred HHCCCHH-HHHHHHHHchhcCCCCCChHH-HHhHHHHhhccCC----------chhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 232 VQNGDLD-EALVLFLEMQLKDRIEPNKVS-LVSVLPTCSSLIG----------LSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 232 ~~~~~~~-~A~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
.+.|.++ +|+.++..+ .. +.|+..| |+.--..+...+. ++++..+++.+.... +-+..+|+.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~-L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQI-LG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHH-HT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHH-HH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3556554 788888877 44 4554433 3333222322222 567777888877765 55677777777
Q ss_pred HHHHhcC--CHHHHHHHHhcC---CCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-
Q 044812 300 DMYSKCG--SLDCARRVFEDS---SFNKDAITWSSIVSGYGLHGK-GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS- 372 (547)
Q Consensus 300 ~~~~~~g--~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~- 372 (547)
-++...| .+++++.+++.+ . +.|..+|+.-.-.+...|. ++++++.+.++++..+. |...++.....+...
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhh
Confidence 7777777 488888888763 3 5677788877777777787 58999999999886432 555555544443332
Q ss_pred -------------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhc-----------CCHHHHHHHHHhC-CCCCCH
Q 044812 373 -------------GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRA-----------GQLDRALDFIKTM-PVEPSP 427 (547)
Q Consensus 373 -------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~ 427 (547)
+.++++++.+....... +-|...|+.+-..+.+. +.++++++.++++ ...||.
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 45788999998888652 33677777555555544 4578888888887 455654
Q ss_pred HHHHHHHHHH-----HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 428 SIWGALVSAS-----VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 428 ~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
.|..+..+. ...|..+++...+.++.+++|....-|..+...+
T Consensus 272 -~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 272 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp -HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 343322222 2467888999999999999998887787776554
No 181
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=2.3e-06 Score=73.06 Aligned_cols=96 Identities=7% Similarity=-0.135 Sum_probs=77.4
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PVEP-S----------------PSIWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
...+..+...+...|++++|...|++. ...| + ...|..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555566666666777766666654 1111 1 368888999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 457 EPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.17 E-value=1.2e-05 Score=72.80 Aligned_cols=113 Identities=10% Similarity=-0.092 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 044812 358 DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVS 435 (547)
Q Consensus 358 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 435 (547)
+...+..+...+...|++++|...|++..+.. +.+...|..+...|.+.|++++|...+++. ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46678888889999999999999999998752 337788899999999999999999999986 4555 5668899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
++...|++++|+..|+++.+.+|.++..+...+....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 9999999999999999999998877655554444444
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=1.2e-05 Score=62.12 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=62.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 044812 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMH 440 (547)
Q Consensus 363 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 440 (547)
..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..|++. ...| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344455666777777777777776541 225666667777777777777777777765 3334 455777777788888
Q ss_pred CCHHHHHHHHHHHHhhCCCCC
Q 044812 441 GNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~ 461 (547)
|++++|+..++++++.+|.++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888887777543
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=9.6e-06 Score=66.51 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=63.6
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-chHHHHHHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP-SNYVSLSNL 470 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~ 470 (547)
+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|.++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567888889999999999999999886 3344 567899999999999999999999999999999887 445455444
Q ss_pred H
Q 044812 471 Y 471 (547)
Q Consensus 471 ~ 471 (547)
.
T Consensus 142 ~ 142 (162)
T 3rkv_A 142 T 142 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.12 E-value=2.9e-06 Score=65.20 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=67.6
Q ss_pred cCcHHHHHHHHHHHHHhcC--CCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044812 372 SGLINEGLEIYNSVINTYR--IKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
.|++++|+..|++..+. + -+.+...+..+...|...|++++|...|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 56777788888877643 1 1224567778888888888888888888876 3334 4668888888999999999999
Q ss_pred HHHHHHHhhCCCCCchHH
Q 044812 448 LAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (547)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999998888765543
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=3.1e-05 Score=75.89 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=49.9
Q ss_pred HHHhcCCHHHHHHHHhc-CCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 044812 301 MYSKCGSLDCARRVFED-SSF-NKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEG 378 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 378 (547)
.+.+.|++++|.+.|++ +.. +.+...|..+..+|.+.|++++|...+++..+.. +-+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555543 111 2234445555555555555555555555555431 11344444555555555555555
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHH--hHhcCCHHHHHHHHH
Q 044812 379 LEIYNSVINTYRIKPTTEICACVVDM--LGRAGQLDRALDFIK 419 (547)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 419 (547)
.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555554331 1122233333333 444455555555444
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.11 E-value=7.2e-06 Score=79.83 Aligned_cols=124 Identities=10% Similarity=0.072 Sum_probs=98.1
Q ss_pred HHhccCcHHHHHHHHHHHHHhcC--CC---C-chhHHHHHHHHhHhcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 044812 368 ACGRSGLINEGLEIYNSVINTYR--IK---P-TTEICACVVDMLGRAGQLDRALDFIKTM---------PVEPSP-SIWG 431 (547)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 431 (547)
.+...|++++|+.++++..+... +. | ...+++.|...|...|++++|..++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578899999988887765421 11 2 3567888999999999999999988775 244554 4899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCCch---HHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 432 ALVSASVMHGNSEMQDLAYKSLIQL-----EPENPSN---YVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 432 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.|...|...|++++|+.++++++++ +|++|.+ ...+..++...|++++|..++.++++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 6766554 4577888889999999999999998754
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=8e-05 Score=72.14 Aligned_cols=61 Identities=7% Similarity=-0.048 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc--C--CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCL--G--SKPD-IITIVGVLSACGRSGLINEGLEIYNSVI 386 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--g--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 386 (547)
++..+...|...|++++|..++++.... + -+|. ...+..++..|...|++++|..++++..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3444555555555555555555544322 1 1111 2344445555555555555555555443
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=1.7e-05 Score=64.57 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=80.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----chh
Q 044812 326 TWSSIVSGYGLHGKGHEAVLLYNKMVCLGSK-PD----IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP----TTE 396 (547)
Q Consensus 326 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~ 396 (547)
++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+...-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455555566666666666666655442100 11 13555566666677777777777766544211111 134
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM-------PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE 457 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 457 (547)
.+..+...+...|++++|...+++. +..+ ...++..+...+...|++++|.+.++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666677777777777777777655 1111 13467778888888999999999998887753
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=1.6e-05 Score=63.50 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=72.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhcCCCC----------chhHHHHHHHHhHhcCCHHHHHHHHHhC-CC-------C
Q 044812 363 VGVLSACGRSGLINEGLEIYNSVINTYRIKP----------TTEICACVVDMLGRAGQLDRALDFIKTM-PV-------E 424 (547)
Q Consensus 363 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~ 424 (547)
......+...|++++|+..|++.++-..-.| +...|..+..++.+.|++++|+..+++. .+ .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 3334444555555555555555543311100 1226777777777777777777776655 33 7
Q ss_pred CCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 044812 425 PSPS-IW----GALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNL 470 (547)
Q Consensus 425 p~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 470 (547)
|+.. .| .....++...|++++|+..|++++++.|.+......+..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7654 78 8999999999999999999999999999887766555443
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.05 E-value=2.7e-05 Score=57.69 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+...+..+..++...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999999999999999999999999999999999987653
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=1.6e-06 Score=65.87 Aligned_cols=92 Identities=10% Similarity=-0.011 Sum_probs=70.7
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------CchHH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN------PSNYV 465 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 465 (547)
+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556667777788888888888888776 2233 56788888999999999999999999999999887 66777
Q ss_pred HHHHHHHcCCCHHHHHHHHH
Q 044812 466 SLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~ 485 (547)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777666655444
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=2.7e-05 Score=72.60 Aligned_cols=151 Identities=16% Similarity=0.100 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044812 292 VSLCNALIDMYSKCGSLDCARRVFED-SSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370 (547)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 370 (547)
...+..+...+.+.|++++|...|++ +...|+... +...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677888889999999999999987 333444331 223333444433221 136778888899
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHHcCCHHHHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSP-SIWGALVSA-SVMHGNSEMQD 447 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~~~~~~a~ 447 (547)
+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++. ...|+. ..+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988652 336788889999999999999999999987 455643 355555554 33456778888
Q ss_pred HHHHHHHhhCCCCC
Q 044812 448 LAYKSLIQLEPENP 461 (547)
Q Consensus 448 ~~~~~~~~~~~~~~ 461 (547)
..|+++.+..|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999988887654
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.99 E-value=0.00049 Score=68.66 Aligned_cols=169 Identities=10% Similarity=-0.018 Sum_probs=129.9
Q ss_pred HHHHHHHHhcC-CCCC-ChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--
Q 044812 308 LDCARRVFEDS-SFNK-DAITWSSIVSGYGLHGK----------GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG-- 373 (547)
Q Consensus 308 ~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-- 373 (547)
.++|++.++++ .+.| +...|+.--..+...|+ +++++..++++.+...+ +...|..-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 45667777652 2234 44557666666666666 88999999999886422 5677777666777778
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----------
Q 044812 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG-QLDRALDFIKTM-PVEP-SPSIWGALVSASVMH---------- 440 (547)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 440 (547)
+++++.+.++++.+.. +-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6799999999998762 337788888777888888 899999999887 4445 677888888877763
Q ss_pred ----CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHH
Q 044812 441 ----GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDA 479 (547)
Q Consensus 441 ----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (547)
+.++++++.+++++..+|.+..+|..+..++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988555
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.96 E-value=4.2e-05 Score=55.24 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=61.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 044812 395 TEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYA 472 (547)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (547)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455666777777777888777777765 2223 56677888888888888888888888888888888888888888776
Q ss_pred cCC
Q 044812 473 SSR 475 (547)
Q Consensus 473 ~~g 475 (547)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.88 E-value=8.8e-05 Score=69.87 Aligned_cols=114 Identities=8% Similarity=0.049 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 044812 359 IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEP-SPSIWGALVSAS 437 (547)
Q Consensus 359 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 437 (547)
...+..+...+.+.|++++|+..|++..+.. +... .....+++. ...| +..+|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 4556677777788888888888888776531 1100 000111111 1223 356888999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 438 VMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 438 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.+.|++++|+..++++++.+|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999987643
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.87 E-value=7.7e-05 Score=56.82 Aligned_cols=77 Identities=6% Similarity=0.003 Sum_probs=61.5
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 414 ALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 414 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
|+..|++. ...| +...+..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555544 3334 56688888888888999999999999999988888888889999999999999999998887653
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.85 E-value=0.00011 Score=53.08 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 424 EPSPSIWGALVSASVMHGN---SEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 424 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
.+++..+..+..++...++ .++|..+++++++.+|.++.....++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3567788888888876665 799999999999999999999999999999999999999999999887653
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.85 E-value=0.00011 Score=71.51 Aligned_cols=116 Identities=7% Similarity=-0.042 Sum_probs=95.3
Q ss_pred CcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHH
Q 044812 373 GLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTM-PVEPS----------------PSIWGALV 434 (547)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~ 434 (547)
+++++|...|+...+. .| ....+..+...|.+.|++++|...|++. ...|+ ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 3444555555443322 22 4567788889999999999999999987 22232 57899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 435 SASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
.+|.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|...|++..+..
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999988754
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00022 Score=56.30 Aligned_cols=111 Identities=7% Similarity=-0.029 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 044812 374 LINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVM----HGNSEMQDLA 449 (547)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~ 449 (547)
++++|.+.|++..+. + .|. .. |...|...+.+++|.++|++.-...+...+..|...|.. .+++++|.+.
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455566666655443 2 122 12 455555555566666666655223455566666666665 6677777777
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHc----CCCHHHHHHHHHHHHhCCC
Q 044812 450 YKSLIQLEPENPSNYVSLSNLYAS----SRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 492 (547)
|+++.+.+ ++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77776653 45567777777776 6777777777777766654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00012 Score=55.19 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 425 PSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
++...|..+...+...|++++|++.++++++..|.++..+..++.++.+.|++++|++.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456788899999999999999999999999999999999999999999999999999999988654
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.00016 Score=70.40 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=80.9
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCC---CC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhc----CC-CC-chhHHHH
Q 044812 334 YGLHGKGHEAVLLYNKMVCL---GSK---PD-IITIVGVLSACGRSGLINEGLEIYNSVINTY----RI-KP-TTEICAC 400 (547)
Q Consensus 334 ~~~~~~~~~a~~~~~~m~~~---g~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~-~~~~~~~ 400 (547)
+...|++++|..++++.++. -+. |+ ..+++.|..+|...|++++|+.++++..+.+ |- .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777665443 111 22 3566777777777777777777777654421 11 22 3456777
Q ss_pred HHHHhHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 044812 401 VVDMLGRAGQLDRALDFIKTM---------PVEPSPS-IWGALVSASVMHGNSEMQDLAYKSLIQL 456 (547)
Q Consensus 401 l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 456 (547)
|...|...|++++|+.++++. +..|+.. +...+..++...+.+++|+.++.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877765 2334433 5566777788888899999999888763
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.69 E-value=3e-05 Score=61.77 Aligned_cols=85 Identities=9% Similarity=0.104 Sum_probs=64.3
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCCchHHHHHHHHHcC
Q 044812 407 RAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGN----------SEMQDLAYKSLIQLEPENPSNYVSLSNLYASS 474 (547)
Q Consensus 407 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (547)
+.+.+++|...+++. ...| +...|..+..++...++ +++|+..|+++++++|.+..+|..++.+|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344556666666554 2233 45566666666665554 57999999999999999999999999999987
Q ss_pred C-----------CHHHHHHHHHHHHhCC
Q 044812 475 R-----------RWDAVAELRTMMKDRG 491 (547)
Q Consensus 475 g-----------~~~~A~~~~~~m~~~~ 491 (547)
| ++++|++.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988754
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.57 E-value=0.00029 Score=50.60 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888999999999999999999999999999999999999999999999999999998764
No 205
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.55 E-value=0.0007 Score=53.23 Aligned_cols=65 Identities=9% Similarity=-0.066 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 425 PSPSIWGALVSASVMHG---NSEMQDLAYKSLIQLE-P-ENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
++..+...+..++++.+ +.++++.+++.+.+.+ | .+...+..|+.+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45555555666666655 4456666666666665 4 3455666666666666666666666666654
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.52 E-value=0.0003 Score=67.34 Aligned_cols=116 Identities=9% Similarity=0.076 Sum_probs=80.3
Q ss_pred HHHhHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCC---ch
Q 044812 402 VDMLGRAGQLDRALDFIKTM---------PVEPS-PSIWGALVSASVMHGNSEMQDLAYKSLIQL-----EPENP---SN 463 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~ 463 (547)
+..+.+.|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++. +|.+| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667777777777654 11232 347888888888889999999888888764 34443 36
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 044812 464 YVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMR 535 (547)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (547)
++.|+.+|...|++++|..++++..+--.. .....||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 778888999999999999988887542110 112268888888888877776665
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=7.9e-05 Score=59.31 Aligned_cols=110 Identities=11% Similarity=0.100 Sum_probs=63.9
Q ss_pred CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 044812 373 GLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQ----------LDRALDFIKTM-PVEP-SPSIWGALVSASVMH 440 (547)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 440 (547)
+.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 34455555555554431 2244555555555554443 34666666665 3444 345677777777665
Q ss_pred -----------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 441 -----------GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 441 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
|++++|++.|+++++++|.+.. |...+. ..++|.++.-.+...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~-y~~al~------~~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH-YLKSLE------MTAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHH------HHHTHHHHHHHHHHSS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH-HHHHHH------HHHhCHhccCcccccc
Confidence 5899999999999999998743 222222 2344555555555443
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.50 E-value=0.0024 Score=50.29 Aligned_cols=113 Identities=10% Similarity=-0.019 Sum_probs=90.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHh----cCCHH
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGR----AGQLD 412 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 412 (547)
.+++++|..+|++..+.| .|+.. |...|...+.+++|.+.|++..+. -+...+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346788999999998887 34433 666777778888899999988764 356777778888887 78999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q 044812 413 RALDFIKTMPVEPSPSIWGALVSASVM----HGNSEMQDLAYKSLIQLEP 458 (547)
Q Consensus 413 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 458 (547)
+|..+|++.-...+...+..|...|.. .++.++|.+.|+++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987434677888889999988 8999999999999988763
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.47 E-value=8.8e-06 Score=75.78 Aligned_cols=236 Identities=12% Similarity=0.145 Sum_probs=138.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044812 88 LYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYV 167 (547)
Q Consensus 88 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 167 (547)
.|+.|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-..++....+..- +..+=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 4555666666666666655544221 1455566666666666666666666655544322 2233345666666
Q ss_pred hcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcC------------------------CCChhh
Q 044812 168 KCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMK------------------------RRNVYA 223 (547)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~------------------------~~~~~~ 223 (547)
+.++..+-.+++. .+|......+.+-|...|.++. |.-+|..+. ..++.+
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeA---AKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDA---AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTT---SSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHH---HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 6666544332221 2444444455555555555555 333333332 136778
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYS 303 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (547)
|-.+-.+|...+.+.-|.-.--.+. +.|| ....++.-|...|.+++...+++.-.... ......|+.|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 8888889998888887765544441 2222 12345667888888888888887665322 456778888888888
Q ss_pred hcCCHHHHHHHHh----cCCCCC------ChhhHHHHHHHHHhcCChHHHHH
Q 044812 304 KCGSLDCARRVFE----DSSFNK------DAITWSSIVSGYGLHGKGHEAVL 345 (547)
Q Consensus 304 ~~g~~~~A~~~~~----~~~~~~------~~~~~~~li~~~~~~~~~~~a~~ 345 (547)
+- ++++..+.++ +++++. ....|.-++-.|+.-.+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 75 4455555444 344221 34458888888888888887753
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.46 E-value=0.00052 Score=52.07 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 377 EGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
.|...|++..+.. +.+...+..+...|...|++++|...|++. ...| +...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666665421 235666777777777777777777777765 2233 45677788888888888888888888888
Q ss_pred hhCCC
Q 044812 455 QLEPE 459 (547)
Q Consensus 455 ~~~~~ 459 (547)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77653
No 211
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.42 E-value=0.0024 Score=63.74 Aligned_cols=151 Identities=13% Similarity=0.012 Sum_probs=120.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCc----------HHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGL----------INEGLEIYNSVINTYRIKPTTEICACVVDML 405 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (547)
....++|++.++++... .|+ ...|+.--.++...|+ ++++.+.++.+.+.. +-+..+|+.-...+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34457889999999985 554 4455554445555555 899999999998763 34777888888888
Q ss_pred HhcC--CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcC------
Q 044812 406 GRAG--QLDRALDFIKTM-PVE-PSPSIWGALVSASVMHG-NSEMQDLAYKSLIQLEPENPSNYVSLSNLYASS------ 474 (547)
Q Consensus 406 ~~~g--~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 474 (547)
.+.| +++++++.++++ ... -+...|+.-..++...| ..+++++.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 779999999998 333 47779999888889999 899999999999999999999999999988774
Q ss_pred --------CCHHHHHHHHHHHHhCC
Q 044812 475 --------RRWDAVAELRTMMKDRG 491 (547)
Q Consensus 475 --------g~~~~A~~~~~~m~~~~ 491 (547)
+.++++.+.+++.....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC
Confidence 56789999988876543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.37 E-value=0.0073 Score=55.38 Aligned_cols=138 Identities=15% Similarity=0.060 Sum_probs=74.9
Q ss_pred CCChhhHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc----cC----cHHHHHHHHHHHH
Q 044812 321 NKDAITWSSIVSGYG--LHG---KGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGR----SG----LINEGLEIYNSVI 386 (547)
Q Consensus 321 ~~~~~~~~~li~~~~--~~~---~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~----~g----~~~~a~~~~~~~~ 386 (547)
+.+...|...+++.. ..+ ...+|..+|++.++. .|+ ...+..+..++.. .+ ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 456667777776543 333 347888999998885 565 3444444333320 00 0111111111111
Q ss_pred HhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 387 NTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTM-PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.....+.+..+|..+...+...|++++|...++++ ...|+...|..+...+...|++++|.+.++++..++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 11112335556666655555567777777776665 334666566666666666777777777777777776644
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.36 E-value=0.00027 Score=67.54 Aligned_cols=82 Identities=10% Similarity=-0.050 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCC---chHHHHHH
Q 044812 408 AGQLDRALDFIKTM---------PVEPSP-SIWGALVSASVMHGNSEMQDLAYKSLIQL-----EPENP---SNYVSLSN 469 (547)
Q Consensus 408 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~ 469 (547)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. +|++| .+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46667777666554 223443 47788888888888888888888888764 34443 36778888
Q ss_pred HHHcCCCHHHHHHHHHHHHh
Q 044812 470 LYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 470 ~~~~~g~~~~A~~~~~~m~~ 489 (547)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888887653
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.31 E-value=0.00088 Score=64.02 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=73.3
Q ss_pred ccCcHHHHHHHHHHHHHhc--CCCC----chhHHHHHHHHhHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 044812 371 RSGLINEGLEIYNSVINTY--RIKP----TTEICACVVDMLGRAGQLDRALDFIKTM---------PVEPSPS-IWGALV 434 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~l~ 434 (547)
..|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899998888776532 1222 2467888999999999999999998876 2456554 899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCCCchHH
Q 044812 435 SASVMHGNSEMQDLAYKSLIQL-----EPENPSNYV 465 (547)
Q Consensus 435 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 465 (547)
..|...|++++|+.++++++++ +|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999999999999874 677765443
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.24 E-value=0.0027 Score=60.78 Aligned_cols=101 Identities=11% Similarity=0.057 Sum_probs=77.3
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhcC--CCC----chhHHHHHHHHhHhcCCHHHHHHHHHhC---------CCCCCH-HH
Q 044812 366 LSACGRSGLINEGLEIYNSVINTYR--IKP----TTEICACVVDMLGRAGQLDRALDFIKTM---------PVEPSP-SI 429 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 429 (547)
+..+...|++++|+.++++..+... +.| ...+++.++..|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4445677899999999988865321 122 2467888999999999999999998876 244554 48
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCCchHHH
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQL-----EPENPSNYVS 466 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~ 466 (547)
++.|...|...|++++|+.++++++++ +|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 899999999999999999999999874 6777665443
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.23 E-value=0.033 Score=42.04 Aligned_cols=140 Identities=10% Similarity=0.012 Sum_probs=97.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHH
Q 044812 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRA 414 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 414 (547)
.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+-+ |. ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Di----------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DL----------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CG----------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------HhhhcHHHH
Confidence 3456777777777776653 245555655544444444455555555553322 21 234555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCc
Q 044812 415 LDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLK 493 (547)
Q Consensus 415 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 493 (547)
..-+-.+. .+....+..+..+...|+.+.-.+++..++...+++|.....++.+|.+.|+..+|.+++++..++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555553 355566777888899999999999999987788889999999999999999999999999999999985
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.16 E-value=0.001 Score=48.64 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=39.1
Q ss_pred HHHhHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 402 VDMLGRAGQLDRALDFIKTM-PVEP-SPS-IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
...+.+.|++++|...+++. ...| +.. .|..+..++...|++++|+..|+++++.+|.++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 44555666677776666665 2223 345 566666666666777777777777766666666554
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.11 E-value=0.0026 Score=46.45 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=29.2
Q ss_pred HHHhccCcHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 367 SACGRSGLINEGLEIYNSVINTYRIKPTTE-ICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
..+...|++++|...|+++.+.. +.+.. .+..+..+|...|++++|...|++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455566666666666655431 12344 5555556666666666666666554
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.04 E-value=0.0027 Score=46.56 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044812 324 AITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 324 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
...+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555556666666666666666655542 11344555555566666666666666665543
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.90 E-value=0.05 Score=57.22 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=44.5
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...|..+...+.+.|+++.|.+.|..+ .. |..+...+...++.+....+-+.....| -++...
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~ 743 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAF 743 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHH
Confidence 4456777777777788888888877776 22 3333333444444444444433333333 123333
Q ss_pred HHHHhcCCHHHHHHHHhcCC
Q 044812 300 DMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~ 319 (547)
.+|.+.|++++|.+++.+.+
T Consensus 744 ~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 744 NAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHcC
Confidence 34444555555555554444
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.90 E-value=0.005 Score=54.02 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=73.1
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-CchHHHHHHHHHcC-CCHHH
Q 044812 411 LDRALDFIKTM-PVEPS---PSIWGALVSASVMH-----GNSEMQDLAYKSLIQLEPEN-PSNYVSLSNLYASS-RRWDA 479 (547)
Q Consensus 411 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 479 (547)
...|...+++. .+.|+ ...|..|+..|... |+.++|.++|+++++++|.. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 46677777765 45666 56888899889884 99999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 044812 480 VAELRTMMKDRGLKKSPG 497 (547)
Q Consensus 480 A~~~~~~m~~~~~~~~~~ 497 (547)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999887765453
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.82 E-value=0.0086 Score=44.24 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=54.3
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 394 TTEICACVVDMLGRAGQLDRALDFIKTM-----P----VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
+..-+..|...+.+.|++..|..+|+.. + ..+...++..|..++.+.|+++.|...++++.+..|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344445666666667777666666654 0 123456888999999999999999999999999999987765
Q ss_pred HHHH
Q 044812 465 VSLS 468 (547)
Q Consensus 465 ~~l~ 468 (547)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5543
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.67 E-value=0.0021 Score=60.22 Aligned_cols=142 Identities=8% Similarity=0.053 Sum_probs=107.9
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHcc
Q 044812 54 NPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGE 133 (547)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 133 (547)
.+.+|..|..+..+.+++.+|++.|=+... +..|..++....+.|.+++-+..+.-.++..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~D--ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADD--PSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCSC--CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCCC--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 577899999999999999999887765554 45688889999999999999998877776533 44444578889999
Q ss_pred CCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC------------------------CChhh
Q 044812 134 IKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQ------------------------RNVGS 189 (547)
Q Consensus 134 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 189 (547)
.++..+..+++ -.|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 98877655443 235655566677777888888888777766642 46778
Q ss_pred HHHHHHHHHcCCCchhH
Q 044812 190 WNVRISGHASSGDFSLV 206 (547)
Q Consensus 190 ~~~li~~~~~~g~~~~a 206 (547)
|..+-.+|...+.+..|
T Consensus 202 WKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLA 218 (624)
T ss_dssp HHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHhCchHHHHH
Confidence 99999999998888775
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.63 E-value=0.014 Score=44.05 Aligned_cols=65 Identities=9% Similarity=-0.068 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCCchHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 044812 425 PSPSIWGALVSASVMHGNSEM---QDLAYKSLIQLE-P-ENPSNYVSLSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 425 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
|+..+--.+..++.+..+... ++.+++.+.+.+ | ........|+-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445554444333 555555554443 2 2333445555556666666666666555543
No 225
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.49 E-value=0.033 Score=51.13 Aligned_cols=134 Identities=18% Similarity=0.140 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHh--c---cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhHh---cC-----C---HHHHHHH
Q 044812 355 SKPDIITIVGVLSACG--R---SGLINEGLEIYNSVINTYRIKPT-TEICACVVDMLGR---AG-----Q---LDRALDF 417 (547)
Q Consensus 355 ~~p~~~~~~~l~~~~~--~---~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-----~---~~~A~~~ 417 (547)
.+.+...|...+++.. . .....+|..+|++..+. .|+ ...|..+..+|.. .+ . ...+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777766533 2 23468899999999865 564 3444444333321 11 1 1222332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 418 IKTMP-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 418 ~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
...+. ...+..+|..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++....+.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 22332 235677888888888888999999999999999996 566778999999999999999999998876653
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.47 E-value=0.012 Score=46.19 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHH
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG---QLDRALDFIKTM-PVE-P--SPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
...+.+.|.+..+. + .++..+...+..++++.+ +.+++..+|++. ... | +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455555555443 2 256666666677777766 555777777665 222 4 2445666778889999999999
Q ss_pred HHHHHHHhhCCCCCchHH
Q 044812 448 LAYKSLIQLEPENPSNYV 465 (547)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (547)
+.++++++.+|.+..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999999998865443
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.41 E-value=0.16 Score=39.01 Aligned_cols=91 Identities=1% Similarity=-0.115 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC-CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccc
Q 044812 424 EPSPSIWGALVSASVMHGN---SEMQDLAYKSLIQLEPE-NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499 (547)
Q Consensus 424 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 499 (547)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+|. .......|+.++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4566666666667776654 45677777777776664 3445667778888888888888888877653
Q ss_pred eEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCc
Q 044812 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540 (547)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (547)
.|...++.++-..+.++|...|.+
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 345566777777777778777764
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.26 E-value=0.099 Score=54.93 Aligned_cols=75 Identities=8% Similarity=-0.022 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcH
Q 044812 59 TKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLN 138 (547)
Q Consensus 59 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 138 (547)
..++..+.+.|..+.|.++.+.. ..-.......|+++.|.++.+.+ .+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence 55556666666666666555321 11122334556666666654433 24455666666666666666
Q ss_pred HHHHHHHHH
Q 044812 139 VGMLIHGLS 147 (547)
Q Consensus 139 ~a~~~~~~~ 147 (547)
.|++.|..+
T Consensus 699 ~A~~~y~~~ 707 (814)
T 3mkq_A 699 LAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666666554
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.14 E-value=0.049 Score=39.02 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHhHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 044812 392 KPTTEICACVVDMLGRAGQ---LDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENP 461 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 461 (547)
+.++..+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..|+++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3466667777777654444 68888888876 3445 456777888888999999999999999999888743
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.77 E-value=0.049 Score=40.02 Aligned_cols=65 Identities=11% Similarity=-0.051 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 426 SPSIWGALVSASVMHGNSEMQDLAYKSLIQLE-------PENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
+..-...++..+...|++..|...|+.+++.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678999999999999999999998752 234567899999999999999999999998764
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.41 Score=38.59 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=53.4
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 044812 301 MYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLE 380 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 380 (547)
.....|+++.|.++.+++. +...|..|.......|+++-|.+.|.+..+ |..+.-.|...|+.+.-..
T Consensus 14 LAL~lg~l~~A~e~a~~l~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN---DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHhC---CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445566666666665543 455666666666666666666666665432 2222223333455444443
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC
Q 044812 381 IYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP 422 (547)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (547)
+-+....+ | -++.-...+.-.|+++++.++|.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 33322221 1 12333344445666666666666654
No 232
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.42 E-value=2.4 Score=42.27 Aligned_cols=114 Identities=13% Similarity=0.045 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 044812 339 KGHEAVLLYNKMVCLG-SKPDI--ITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRAL 415 (547)
Q Consensus 339 ~~~~a~~~~~~m~~~g-~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 415 (547)
+.+.|...|......+ +.+.. .....+.......+...++...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6778888887775443 22221 12223333344445345555555554332 233333333444445678888888
Q ss_pred HHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044812 416 DFIKTMPVEP--SPSIWGALVSASVMHGNSEMQDLAYKSLIQ 455 (547)
Q Consensus 416 ~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 455 (547)
..|+.|+..+ ...-.--+..++...|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888885332 233333455677778888888888888764
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.41 E-value=0.15 Score=38.51 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHH
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDR---ALDFIKTM-PVE-P--SPSIWGALVSASVMHGNSEMQD 447 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~ 447 (547)
+..+.+-|...... +. ++..+--.+..++.+..+..+ ++.++++. ... | .....-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455555555443 32 566666667777777776655 77777765 222 3 2234556777899999999999
Q ss_pred HHHHHHHhhCCCCCchHHH
Q 044812 448 LAYKSLIQLEPENPSNYVS 466 (547)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~ 466 (547)
+.++.+++.+|.|..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999998765543
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.38 E-value=0.14 Score=38.82 Aligned_cols=89 Identities=1% Similarity=-0.116 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC-CCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccc
Q 044812 424 EPSPSIWGALVSASVMHGN---SEMQDLAYKSLIQLEPE-NPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCS 499 (547)
Q Consensus 424 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 499 (547)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+|. ....+..|+.++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--------- 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---------
Confidence 4555555556666666554 45677777777776663 3456777788888888888888888877642
Q ss_pred eEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcC
Q 044812 500 WISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAA 538 (547)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (547)
.|+..++.++-..+.++|.+.|
T Consensus 108 -----------------eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 108 -----------------ERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhhc
Confidence 3455666666666666666544
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.86 Score=36.74 Aligned_cols=84 Identities=10% Similarity=0.102 Sum_probs=55.5
Q ss_pred ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH
Q 044812 220 NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI 299 (547)
Q Consensus 220 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (547)
+...|..|.......|+++-|.+.|... .. +..+.-.|...|+.+....+-+.....| -++...
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af 96 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQ-HS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSML 96 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHT-TC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHh-CC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHH
Confidence 4556777888888888888888888776 32 4444445555666666655555555444 245555
Q ss_pred HHHHhcCCHHHHHHHHhcCC
Q 044812 300 DMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~ 319 (547)
..+.-.|+++++.++|.+.+
T Consensus 97 ~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 97 LNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHCC
Confidence 56667788888888887776
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.73 E-value=4.8 Score=42.00 Aligned_cols=251 Identities=8% Similarity=-0.065 Sum_probs=112.8
Q ss_pred HHHHHCCCHHHHHHHHHHchhcCCCCCChH--HHHhHHHHhhccCCchhHHHHHHHHHHcCC-------CCchhHHHHHH
Q 044812 229 NGYVQNGDLDEALVLFLEMQLKDRIEPNKV--SLVSVLPTCSSLIGLSGGKQIHGFAIRKEL-------NHDVSLCNALI 299 (547)
Q Consensus 229 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~ 299 (547)
-+....|+.++++.+++.. ...+...+.. .-..+.-+....|..+.+..++.......- .+....-.++.
T Consensus 382 LGlIh~g~~~~gl~~L~~y-L~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPY-LPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTT-STTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHh-ccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 3456677888887777665 2211012222 222233334444444556666665554321 01111122222
Q ss_pred HH--HHhcCCHHHHHHHHhc-CCCCCChhh--HH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHh
Q 044812 300 DM--YSKCGSLDCARRVFED-SSFNKDAIT--WS--SIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIV--GVLSACG 370 (547)
Q Consensus 300 ~~--~~~~g~~~~A~~~~~~-~~~~~~~~~--~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~l~~~~~ 370 (547)
-+ |.-.++- ++.+.+.. +. ..+... .. +|...+.-.|+.+....++..+.+. .+..... .+.-++.
T Consensus 461 LGla~~GS~~e-ev~e~L~~~L~-dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll 535 (963)
T 4ady_A 461 IGLAAMGSANI-EVYEALKEVLY-NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHSTTCCCH-HHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCH-HHHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhh
Confidence 22 2233443 33333322 22 222211 11 2223344556666666666666553 1222322 2333344
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHH--HHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHH
Q 044812 371 RSGLINEGLEIYNSVINTYRIKPTTEICA--CVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVS--ASVMHGNSEMQ 446 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a 446 (547)
..|+.+.+..+.+.+.... .|....-. ++.-+|+-.|+.....+++..+...++..+-...+- ++...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHH
Confidence 6677777777777665431 23222222 334456677777666667776632333332222222 33345665555
Q ss_pred HHHHHHHHhhCCCCCchHH--HHHHHHHcCCC-HHHHHHHHHHHHh
Q 044812 447 DLAYKSLIQLEPENPSNYV--SLSNLYASSRR-WDAVAELRTMMKD 489 (547)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~-~~~A~~~~~~m~~ 489 (547)
.++++.+.+.. ++.+-. .++-+....|+ ..+|++++..+..
T Consensus 614 ~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 614 PRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 55555444322 222222 22222233333 2567777777753
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.47 E-value=0.07 Score=46.89 Aligned_cols=81 Identities=12% Similarity=0.218 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhHh-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHc-CCH
Q 044812 376 NEGLEIYNSVINTYRIKPT---TEICACVVDMLGR-----AGQLDRALDFIKTM-PVEPS--PSIWGALVSASVMH-GNS 443 (547)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~-~~~ 443 (547)
..|...+++..+- .|+ ...|..+...|.+ -|+.++|.+.|++. .+.|+ ..++......++.. |+.
T Consensus 180 ~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4444445554432 343 4455556665655 36666666666665 33442 45555566666553 667
Q ss_pred HHHHHHHHHHHhhCCC
Q 044812 444 EMQDLAYKSLIQLEPE 459 (547)
Q Consensus 444 ~~a~~~~~~~~~~~~~ 459 (547)
+.+.+.++++++..|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777666554
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.2 Score=51.02 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=50.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
..-|...|+++.|+++-+++....|.+-.+|..|+.+|...|+|+.|.-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556788999999999999999999999999999999999999999999999884
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.22 E-value=1.3 Score=33.51 Aligned_cols=65 Identities=17% Similarity=0.033 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCC
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 288 (547)
...+..+..+...|.-++-.+++..+ .. +.+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~-l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREI-LK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-C---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHH-hc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34566678888899999999999884 22 4677888888888999999999999999888888875
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.09 E-value=0.27 Score=38.09 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 044812 441 GNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRG 491 (547)
Q Consensus 441 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 491 (547)
+|+++|.++|+.+++....-...|...+..-.+.|+.+.|.+++.+....+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 455555555555555433334444555555555566666666555554433
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.97 E-value=0.14 Score=48.15 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHH-----hCCCccCCcc
Q 044812 429 IWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMK-----DRGLKKSPGC 498 (547)
Q Consensus 429 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 498 (547)
....++.++...|++.++...++.+...+|-+...|..++.+|.+.|+..+|.+.|++.. +.|+.|.+.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345567778899999999999999999999999999999999999999999999999874 3599888865
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.86 E-value=6.9 Score=40.87 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=53.4
Q ss_pred HHHHHHCCCHHHHHHHHHHchhcCCCCCChHH--HHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044812 228 INGYVQNGDLDEALVLFLEMQLKDRIEPNKVS--LVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC 305 (547)
Q Consensus 228 i~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (547)
.-++...|+.+.+..+++.+ ... ..|.... ...+.-+|+..|+.....+++..+.+.. ..++.....+.-++...
T Consensus 531 gLGll~~g~~e~~~~li~~L-~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 531 GLALINYGRQELADDLITKM-LAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHH-HHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTS
T ss_pred HHHhhhCCChHHHHHHHHHH-HhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhcc
Confidence 33444566666666666665 321 1121111 1223345666666666666666665432 12222222222233334
Q ss_pred CCHHHHHHHHhcCCCCCChhh--HHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 044812 306 GSLDCARRVFEDSSFNKDAIT--WSSIVSGYGLHGKG-HEAVLLYNKMVC 352 (547)
Q Consensus 306 g~~~~A~~~~~~~~~~~~~~~--~~~li~~~~~~~~~-~~a~~~~~~m~~ 352 (547)
|+.+.+.++++.+.-..|... -..+.-+....|.. .++.+++..+..
T Consensus 608 g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 608 RDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 554555555543211222222 22222333333332 456666666654
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.40 E-value=0.99 Score=35.01 Aligned_cols=61 Identities=8% Similarity=0.036 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 409 GQLDRALDFIKTM-P-VEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 409 g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
++.++|.++|+.+ . .+.=...|.....--.+.|+...|.+++.+++...|.+...+...+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 4555555555544 0 01115566666666677888888888888888877766555544443
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.93 E-value=6.7 Score=37.45 Aligned_cols=256 Identities=8% Similarity=0.035 Sum_probs=126.0
Q ss_pred cCchHHHHHHHHHHHh-----CCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCc---chHHHHHHH----HHhcCC
Q 044812 34 RSLKLTKQSHSQILSL-----GHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDV---YLYNSLING----YVKNHG 101 (547)
Q Consensus 34 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~----~~~~~~ 101 (547)
+++..|.+.+-.+.+. +..-+......++..|...|+++...+.+..+..... ..-..++.. +.....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5666665555444432 2344567788899999999999988776655433211 112222222 222222
Q ss_pred hhH--HHHHHHHhhhCCCCCCc--------chHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHH
Q 044812 102 HNE--ALELFSNMYYSNVSPDD--------FTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVD-----VILANSLMSMY 166 (547)
Q Consensus 102 ~~~--A~~~~~~m~~~~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l~~~~ 166 (547)
.+. -..+.+... .+.... .....|...+...|++.+|..++..+...-...+ ...+...++.|
T Consensus 110 ~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 221 111221111 111110 1123355556666666666666666543211111 23444555666
Q ss_pred HhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCC--hhhHHHHHHHHHHCCCHHHHHHHH
Q 044812 167 VKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRN--VYAWTAMINGYVQNGDLDEALVLF 244 (547)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~ 244 (547)
...+++..|..+++++. ...+.....|+ ...|...+..+...+++.+|.+.|
T Consensus 188 l~~~d~~~a~~~~~ki~--------------------------~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKIL--------------------------KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHTCHHHHHHHHHHHH--------------------------HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH--------------------------HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66666666666555431 11222222222 245667778888889999988888
Q ss_pred HHchhcCCCCCChHHHH----hHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHHHHHHhc
Q 044812 245 LEMQLKDRIEPNKVSLV----SVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKC--GSLDCARRVFED 317 (547)
Q Consensus 245 ~~m~~~~~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 317 (547)
.+.........|...+. .++.+..-.+....-..+.........-++...+..++.+|... .+++...+.|..
T Consensus 242 ~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 242 QEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 77733222222322221 11111111111122222333333333235667788888888764 467777777764
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.22 E-value=0.63 Score=36.87 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=23.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHH
Q 044812 462 SNYVSLSNLYASSRRWDAVAELRTMMK 488 (547)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 488 (547)
+.-..++.+|.+.|++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 456779999999999999999988653
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.19 E-value=6.2 Score=35.31 Aligned_cols=166 Identities=13% Similarity=0.050 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHH----HHHhhhCCCCCCcchHHHHHHHHc
Q 044812 57 VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALEL----FSNMYYSNVSPDDFTLATISKLSG 132 (547)
Q Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~ 132 (547)
.|.++..-|.+++++++|++++.. -...+.+.|+...|-++ .+...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778888899999886543 23345667777666554 455556688888888888887776
Q ss_pred cCCCc-----HHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcC---CC
Q 044812 133 EIKDL-----NVGMLIHGLSIKIGF--VVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASS---GD 202 (547)
Q Consensus 133 ~~~~~-----~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 202 (547)
....- .-..+...+..+.|- ..++.....+...|.+.|++.+|..-|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 64321 222333334444432 246778888999999999999999877633222455555555444443 43
Q ss_pred chhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 203 FSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 203 ~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
..+ .+...-.+ +-.|.-.|+...|..+|+..
T Consensus 184 ~~e-------------~dlf~~Ra-VL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 184 DST-------------VAEFFSRL-VFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHH-------------HHHHHHHH-HHHHHHTTBHHHHHHHHHHH
T ss_pred cch-------------HHHHHHHH-HHHHHHhcCHHHHHHHHHHH
Confidence 222 12222222 23345677777777777765
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.93 E-value=6.9 Score=35.29 Aligned_cols=166 Identities=11% Similarity=0.046 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHH----HHhhhCCCCCCcchHHHHHHHHc
Q 044812 57 VSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELF----SNMYYSNVSPDDFTLATISKLSG 132 (547)
Q Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~l~~~~~ 132 (547)
+|.++..-|.+++++++|++++-. -...+.+.|+...|-++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344556668889999999986533 233456667776655544 55556688888888888888877
Q ss_pred cCCCcH-HHHHH----HHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchh
Q 044812 133 EIKDLN-VGMLI----HGLSIKIG--FVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSL 205 (547)
Q Consensus 133 ~~~~~~-~a~~~----~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 205 (547)
....-+ .=..+ ..+..+.| ..-|......+...|.+.+++.+|..-|-.-.+++...+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 665422 11223 33334444 334677888889999999999999998843222233566555555554443222
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHc
Q 044812 206 VVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEM 247 (547)
Q Consensus 206 a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 247 (547)
.+...-.+ +-.|...++...|..+++..
T Consensus 186 -------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 186 -------------APLYCARA-VLPYLLVANVRAANTAYRIF 213 (336)
T ss_dssp -------------HHHHHHHH-HHHHHHTTCHHHHHHHHHHH
T ss_pred -------------HHHHHHHH-HHHHHHhCCHHHHHHHHHHH
Confidence 23333333 33456677888887776655
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.33 E-value=3.1 Score=45.37 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhh
Q 044812 58 STKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMY 113 (547)
Q Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 113 (547)
...++..+.+.+.++-|.++....+. +....-.+..++...|++++|.+.|++.-
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44566677777888888776665544 33333445667788899999999997753
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.00 E-value=10 Score=41.40 Aligned_cols=166 Identities=9% Similarity=-0.062 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhc
Q 044812 190 WNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSS 269 (547)
Q Consensus 190 ~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 269 (547)
...++..+...+..+. +.++..-.+ .+...--.+..+|...|++++|.+.|.+. ..|+..+......
T Consensus 815 ~~~l~~~l~~~~~~~~---~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~------- 881 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNA---CMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAV------- 881 (1139)
T ss_dssp HHHHHHHHHHHSCTTH---HHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSS-------
T ss_pred HHHHHHHHHHhhhHHH---HHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhhh-------
Confidence 3346667777787776 555544444 34444456788999999999999999886 3333332211000
Q ss_pred cCCchhHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhc----CCC-CCCh--hhHHHHHHHHHhcCCh
Q 044812 270 LIGLSGGKQIHGFAIRKEL--NHDVSLCNALIDMYSKCGSLDCARRVFED----SSF-NKDA--ITWSSIVSGYGLHGKG 340 (547)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~-~~~~--~~~~~li~~~~~~~~~ 340 (547)
..-+..+..... ..-..-|..++..+.+.|.++.+.++-+. .+- .++. ..|..+..++...|++
T Consensus 882 -------~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y 954 (1139)
T 4fhn_B 882 -------LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF 954 (1139)
T ss_dssp -------HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred -------hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence 000111111111 11223466778888888888877766542 221 1211 2588889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 044812 341 HEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINE 377 (547)
Q Consensus 341 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 377 (547)
++|...+-.+..... -...+..|+..+|..|..+.
T Consensus 955 e~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 955 DAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 999999988876533 35667777777777766544
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.18 E-value=2.1 Score=33.87 Aligned_cols=134 Identities=11% Similarity=0.083 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchh-H
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLG-SKPD-------IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTE-I 397 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~ 397 (547)
+-.-+..+...|.++.|.-+...+.... ..|+ ..++..+.+++...|++..|...|++.......-+... .
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344566777888888877766654321 1233 13556667778888888888888887654332222111 1
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 044812 398 CACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLY 471 (547)
Q Consensus 398 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (547)
...+. ........ ....++...--.+..+|.+.+++++|+.+++.+-.... ++.+-..|++.|
T Consensus 103 ~~~~~----~~ss~p~s------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R-t~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTG----NSASTPQS------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR-TPKINMLLANLY 165 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC-CHHHHHHHHHHC
T ss_pred ccccc----ccCCCccc------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc-CHHHHHHHHHHh
Confidence 11010 00000000 00112233334466677778888888777766543332 344555555544
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.98 E-value=3.5 Score=29.32 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=40.9
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 420 TMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 420 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
.+..-|++.+..+.+++|.+.+|+..|.++++-+...-.+...+|..++.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33567999999999999999999999999999998876555566776654
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.29 E-value=6.1 Score=30.36 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=50.4
Q ss_pred CCchhHHHHHHHHhHhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 392 KPTTEICACVVDMLGRAGQL---DRALDFIKTM-PVEP--SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
.|+..+--.+..++.+..+. .+++.++++. ...| .....-.|.-++.+.|++++|.+..+.+++.+|.|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 45555555566667666644 3566666655 2223 233455677789999999999999999999999986543
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.25 E-value=14 Score=33.25 Aligned_cols=123 Identities=10% Similarity=0.037 Sum_probs=66.9
Q ss_pred hcCCCCCChHHHHhHHHHhhccCCch-----hHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 044812 249 LKDRIEPNKVSLVSVLPTCSSLIGLS-----GGKQIHGFAIRKE--LNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFN 321 (547)
Q Consensus 249 ~~~~~~p~~~~~~~ll~~~~~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 321 (547)
.+.++++|......++..+.....-+ -..+...+-.+.| ..-++.....+...|.+.+++.+|...|- .+-.
T Consensus 86 ~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~ 164 (336)
T 3lpz_A 86 RQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTK 164 (336)
T ss_dssp HHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCT
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCC
Confidence 34455556555555555554433211 1112222333333 23467788889999999999999998885 3423
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 044812 322 KDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 322 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
+....+..++.-+...+... .++...-..++. |.-.+++..|...++...+
T Consensus 165 ~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 165 ESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp THHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 33456655554444333221 122233333443 4445788888887766654
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.37 E-value=3.8 Score=31.03 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=46.9
Q ss_pred CCchhHHHHHHHHhHhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchH
Q 044812 392 KPTTEICACVVDMLGRAGQL---DRALDFIKTM-PVEP--SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNY 464 (547)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 464 (547)
.|+..+--.+..++.+..+. .+++.++++. ...| ....+-.|.-++.+.|++++|.+..+.+++.+|.|..+-
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 34555555556666666544 3456666554 2224 233555667788888888888888888888888876543
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.71 E-value=3.4 Score=42.13 Aligned_cols=51 Identities=18% Similarity=0.110 Sum_probs=27.2
Q ss_pred HhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhHhcCCHHHHHHHHHhCC
Q 044812 369 CGRSGLINEGLEIYNSVINTYRIKP-TTEICACVVDMLGRAGQLDRALDFIKTMP 422 (547)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 422 (547)
|...|+++.|+++-++.... .| +..+|..|..+|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33455555555555555432 23 45555555555555555555555555554
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.01 E-value=10 Score=31.18 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHHhhC--CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCcc
Q 044812 440 HGNSEMQDLAYKSLIQLE--PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494 (547)
Q Consensus 440 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 494 (547)
.+....+..+|..+...+ ......|...+..+...|++++|.++++.-.+++..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344778888888887764 5456677888888888888888888888877776654
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.62 E-value=4.7 Score=37.68 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=22.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044812 332 SGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNS 384 (547)
Q Consensus 332 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 384 (547)
..+...|+++++...+..+.... +-+...+..++.++...|+..+|.+.|+.
T Consensus 179 ~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 179 EAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444444444444443321 22344444444444444444444444444
No 258
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.55 E-value=17 Score=31.66 Aligned_cols=224 Identities=11% Similarity=0.037 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCchhHHHHhccCCCCCc----chHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchH--HHHHHHHcc
Q 044812 60 KLITAYALCGQPTQSQLVFNSIQHKDV----YLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL--ATISKLSGE 133 (547)
Q Consensus 60 ~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~ 133 (547)
..+...++.|+.+....+++.-..++. .-++ .+...+..|+.+ +++.+.+.|..|+.... .+.+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 445556677888887777776544321 1222 334445556654 34444455554433211 122223334
Q ss_pred CCCcHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHH
Q 044812 134 IKDLNVGMLIHGLSIKIGFVVDVIL--ANSLMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRR 211 (547)
Q Consensus 134 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~ 211 (547)
.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-...+.... .. .
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----------~~-------~ 139 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK-----------TK-------E 139 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC-----------CC-------H
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccc-----------cH-------H
Confidence 44443 3344444554433211 01123334455666555555554332221000 00 0
Q ss_pred HHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCC---hHHHHhHHHHhhccCCchhHHHHHHHHHHcCC
Q 044812 212 VFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPN---KVSLVSVLPTCSSLIGLSGGKQIHGFAIRKEL 288 (547)
Q Consensus 212 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 288 (547)
..... +.... +.+...+..|+.+-+..+++.. |..++ ....+.+. .....++......+.+.+.+.|.
T Consensus 140 ~~~~~---~~~g~-t~L~~A~~~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 140 DQERL---RKGGA-TALMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp HHHHT---TCCCC-CHHHHHHHHTCHHHHHHHHHTS----CCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTC
T ss_pred HHHhh---ccCCC-cHHHHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCC
Confidence 00000 00001 1233344566666655555432 22222 11222222 23334555555667777777776
Q ss_pred CCchhH--HHHHHHHHHhcCCHHHHHHHHhcCC
Q 044812 289 NHDVSL--CNALIDMYSKCGSLDCARRVFEDSS 319 (547)
Q Consensus 289 ~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 319 (547)
.++... -.+.+...++.|+.+-+..+++..+
T Consensus 211 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g 243 (285)
T 1wdy_A 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243 (285)
T ss_dssp CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccC
Confidence 554321 1234455566777777777776444
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.86 E-value=9.6 Score=27.15 Aligned_cols=63 Identities=24% Similarity=0.268 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 339 KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 339 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
+.-+..+-++.+....+-|++......+++|-+.+++..|.++|+.+..+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3446666777777777888888888888999999999999999888866533 33456766664
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.97 E-value=10 Score=26.82 Aligned_cols=85 Identities=12% Similarity=0.014 Sum_probs=58.1
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
.++|..+-+.+...+. ...+--+-+..+...|++++|..+.+... .||...|..|-. .+.|-.+++...+.++..
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4566666666665553 22222333455678899999999999888 899998877755 467888888888878877
Q ss_pred cCCCCCHHHHH
Q 044812 353 LGSKPDIITIV 363 (547)
Q Consensus 353 ~g~~p~~~~~~ 363 (547)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 44444443
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.59 E-value=9.5 Score=28.85 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=42.0
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 044812 419 KTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSN 469 (547)
Q Consensus 419 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 469 (547)
-.+..-|++.+....+++|.+.+|+..|.++++-+..+-.+...+|..++.
T Consensus 80 ~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 80 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 334567999999999999999999999999999998876555667777654
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.37 E-value=27 Score=31.20 Aligned_cols=141 Identities=10% Similarity=-0.003 Sum_probs=76.7
Q ss_pred HHHCCCHHHHHH----HHHHchhcCCCCCChHHHHhHHHHhhccCCc-----hhHHHHHHHHHHcCC--CCchhHHHHHH
Q 044812 231 YVQNGDLDEALV----LFLEMQLKDRIEPNKVSLVSVLPTCSSLIGL-----SGGKQIHGFAIRKEL--NHDVSLCNALI 299 (547)
Q Consensus 231 ~~~~~~~~~A~~----~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l~ 299 (547)
+.+.|+...|.+ +++-. .+.+++++......++..+...... +-..+...+-.+.|- .-++..+..+.
T Consensus 63 ll~~~Q~~sa~DLa~llvev~-~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a 141 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVY-DLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIG 141 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 344455444433 23333 4556777776666666665443221 122233333333332 23677888999
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044812 300 DMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLH---GKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLIN 376 (547)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 376 (547)
..|.+.|++.+|...|- .+-..+...+..++.-+... |...++- ...-..++. |.-.|+..
T Consensus 142 ~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~RaVL~-yL~l~n~~ 205 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRLVFN-YLFISNIS 205 (312)
T ss_dssp HHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHHHHH-HHHTTBHH
T ss_pred HHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHHHHH-HHHhcCHH
Confidence 99999999999998886 33122344554444433333 3333321 112222333 34567888
Q ss_pred HHHHHHHHHHHh
Q 044812 377 EGLEIYNSVINT 388 (547)
Q Consensus 377 ~a~~~~~~~~~~ 388 (547)
.|..+++...+.
T Consensus 206 ~A~~~~~~f~~~ 217 (312)
T 2wpv_A 206 FAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877544
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.16 E-value=11 Score=26.68 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=57.8
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 273 LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
.++|..+-+.+...+. ...+--+-+..+...|++++|..+.+... -||...|..|-. .+.|-.+++...+.++..
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4566666666665553 22222333455678899999999999988 899999877755 467777888888878877
Q ss_pred cCCCCCHHHHH
Q 044812 353 LGSKPDIITIV 363 (547)
Q Consensus 353 ~g~~p~~~~~~ 363 (547)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 44444443
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.97 E-value=3.6 Score=35.59 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=39.6
Q ss_pred HhHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 044812 404 MLGRAGQLDRALDFIKTM-PVEP-SPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPEN 460 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 460 (547)
.+.+.|++++|++....- ...| |...-..|+..+|-.|++++|.+-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 455677787777776544 3344 55566667777788888888888888888777753
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.06 E-value=17 Score=27.48 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 340 GHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 340 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
.-+..+-++.+....+-|++......+.+|-+.+++..|.++|+-+..+. .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 33555666777777788999999999999999999999999999886653 344556776665
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.96 E-value=17 Score=28.26 Aligned_cols=49 Identities=4% Similarity=0.001 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhC--CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCcc
Q 044812 446 QDLAYKSLIQLE--PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494 (547)
Q Consensus 446 a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 494 (547)
+..+|..+...+ ...+..|...+..+...|++++|.++++.-.+++..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 677888887654 4456678888888888899999999888877776654
No 267
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.63 E-value=26 Score=27.72 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhC--CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccC
Q 044812 446 QDLAYKSLIQLE--PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKS 495 (547)
Q Consensus 446 a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 495 (547)
...+|..+...+ ...+..|...+..+...|++.+|.++++.-.+.+..|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 556777776654 44556677888888888888888888888777776553
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.27 E-value=34 Score=27.87 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=53.6
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLS 131 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 131 (547)
.+++.+-...+..+.+.|..+....+.+.+..++...-...+.++.+.+..+ +...+..+.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555543 3333333332 13444444455555
Q ss_pred ccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 132 GEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
.+.++.+....+ ..+.. .++..+-...+.++.+.|+.
T Consensus 101 ~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~ 137 (201)
T 3ltj_A 101 GQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDE 137 (201)
T ss_dssp HHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHTCG
T ss_pred HHhCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCCH
Confidence 555543322222 22221 33444444555555555543
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.75 E-value=30 Score=32.67 Aligned_cols=96 Identities=13% Similarity=0.015 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcC-----CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHH--HH
Q 044812 294 LCNALIDMYSKCGSLDCARRVFEDS-----SFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCL---GSKPDIIT--IV 363 (547)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~--~~ 363 (547)
+...+...|.+.|+++.|.+.|.++ +...-...+..+++.+...+++..+...+.+.... +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888888888888888888763 21233456777788888888888888888776433 32333222 11
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhc
Q 044812 364 GVLSACGRSGLINEGLEIYNSVINTY 389 (547)
Q Consensus 364 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 389 (547)
.-...+...+++..|...|-+....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 12223456678888887777766543
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.52 E-value=26 Score=33.10 Aligned_cols=91 Identities=7% Similarity=-0.008 Sum_probs=49.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCchH----H
Q 044812 397 ICACVVDMLGRAGQLDRALDFIKTM-----PVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE--PENPSNY----V 465 (547)
Q Consensus 397 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~----~ 465 (547)
+...+...|.+.|++++|.+.+.++ ....-...+...+..+...+++..+...++++.... ..++... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4455666666666666666666665 111223455556666666667777666666665431 2222211 2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHH
Q 044812 466 SLSNLYASSRRWDAVAELRTMM 487 (547)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~m 487 (547)
..+..+...++|.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2333445566676666666554
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.39 E-value=56 Score=28.30 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=60.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCch----hHHHHHHHHhHhc
Q 044812 333 GYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTT----EICACVVDMLGRA 408 (547)
Q Consensus 333 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 408 (547)
...+.|+.++++.....-++.. +-|...-..++..+|-.|+++.|..-++...+. .|+. ..|..+|.+-.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~-- 79 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQ-- 79 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHH--
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHH--
Confidence 3455667777777666666652 225555566666677777777777766666533 3332 23333333211
Q ss_pred CCHHHHHHHHHh--CC--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCCc
Q 044812 409 GQLDRALDFIKT--MP--VEPSPSIWGALVSASV--MHGNSEMQDLAYKSLIQLEPENPS 462 (547)
Q Consensus 409 g~~~~A~~~~~~--~~--~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~ 462 (547)
.. .++|.- .+ +.....-...++.+.. ..|+.++|.++-.++.+.-|..+.
T Consensus 80 --~R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 --AR--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp --HH--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred --HH--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 00 011111 01 1111222333444433 457777777777777776665544
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.81 E-value=38 Score=24.02 Aligned_cols=78 Identities=9% Similarity=-0.079 Sum_probs=53.9
Q ss_pred CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhh
Q 044812 35 SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY 114 (547)
Q Consensus 35 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 114 (547)
.-.+|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|--+++..-+..+..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 55667777766666653 22222223345777899999999988888888888877644 577877877777777776
Q ss_pred CC
Q 044812 115 SN 116 (547)
Q Consensus 115 ~~ 116 (547)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.65 E-value=63 Score=26.45 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=6.7
Q ss_pred chhHHHHHHHHHHhcCC
Q 044812 155 DVILANSLMSMYVKCGK 171 (547)
Q Consensus 155 ~~~~~~~l~~~~~~~g~ 171 (547)
+..+....+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333333444444443
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.72 E-value=40 Score=23.94 Aligned_cols=78 Identities=9% Similarity=-0.055 Sum_probs=53.8
Q ss_pred CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhh
Q 044812 35 SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYY 114 (547)
Q Consensus 35 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 114 (547)
.-.+|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|--+++..-+..+..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 55677777776666653 22222223345777899999999999888888888877644 467777777777777766
Q ss_pred CC
Q 044812 115 SN 116 (547)
Q Consensus 115 ~~ 116 (547)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.61 E-value=1.1e+02 Score=28.34 Aligned_cols=283 Identities=11% Similarity=0.023 Sum_probs=138.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC--------CChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCC---CChhhH--
Q 044812 158 LANSLMSMYVKCGKFSECLNLFDEMPQ--------RNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKR---RNVYAW-- 224 (547)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~---~~~~~~-- 224 (547)
....|...|.+.|+.++..+++..... +.......++..+....+... .-.+++.+..+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTG--IEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHH--HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888888888888888777654 011134445555544332211 11222211111 011112
Q ss_pred ----HHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHH
Q 044812 225 ----TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALID 300 (547)
Q Consensus 225 ----~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 300 (547)
.-++..|...|++.+|.+++..+ .+.--..|..++ -..++..-+.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l-~~~~~~~dd~~~------------------------------llev~lle~~ 147 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQL-LRELKKLDDKNL------------------------------LVEVQLLESK 147 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHTTSSCTHH------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhccccchh------------------------------HHHHHHHHHH
Confidence 24667777777777777777766 221111111110 1223344455
Q ss_pred HHHhcCCHHHHHHHHhcC-----CCCCChhhHHH----HHHHHH-hcCChHHHHHHHHHHHHcC---CCC---CHHHHHH
Q 044812 301 MYSKCGSLDCARRVFEDS-----SFNKDAITWSS----IVSGYG-LHGKGHEAVLLYNKMVCLG---SKP---DIITIVG 364 (547)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~----li~~~~-~~~~~~~a~~~~~~m~~~g---~~p---~~~~~~~ 364 (547)
.|...|++.++...+... .+.+++..... -...+. ..+++..|...|-+..+.- ..| +...|..
T Consensus 148 ~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv 227 (394)
T 3txn_A 148 TYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML 227 (394)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 555666666666555431 11122221111 112344 5667777766665543210 011 1223333
Q ss_pred HHHHHhccCcHHHHHHHHH-HHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC
Q 044812 365 VLSACGRSGLINEGLEIYN-SVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMP--VEPSPSIWGALVSASVMHG 441 (547)
Q Consensus 365 l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~ 441 (547)
|..... ++..+-..++. .....+ ..|....+..++.+| ..+++.+...+++... +..|......+
T Consensus 228 L~aLl~--~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-------- 295 (394)
T 3txn_A 228 LCKIML--GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-------- 295 (394)
T ss_dssp HHHHHT--TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH--------
T ss_pred HHHHHc--CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH--------
Confidence 332222 22222222222 211222 245666666677765 4578888888887762 34455432111
Q ss_pred CHHHHHHHHHHHHh------hCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 044812 442 NSEMQDLAYKSLIQ------LEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGL 492 (547)
Q Consensus 442 ~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 492 (547)
..+++++.+ ..|-....+..++..+.- ..+++...+-+|...|.
T Consensus 296 -----~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 296 -----GTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred -----HHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 122222221 246667778888887754 68899999999987775
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.55 E-value=75 Score=26.06 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=40.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc
Q 044812 337 HGKGHEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394 (547)
Q Consensus 337 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 394 (547)
.+....+.++|..|...|+--. ..-|......+...|++.+|.++|+.-++. +-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 3446688888888888776554 456666777777888888888888877766 55553
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.37 E-value=63 Score=31.17 Aligned_cols=61 Identities=7% Similarity=-0.008 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHhccCCCCCc-chHH-------HHHHHHHhcCChhHHHHHHHHhhhC
Q 044812 55 PFVSTKLITAYALCGQPTQSQLVFNSIQHKDV-YLYN-------SLINGYVKNHGHNEALELFSNMYYS 115 (547)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-------~ll~~~~~~~~~~~A~~~~~~m~~~ 115 (547)
...+|.+++.|...+.++.|..+..+..-|.. .+-+ .+.+.+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34567777777777788888877777655432 1111 1234455667777777777776654
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.92 E-value=34 Score=28.58 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhC--CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCcc
Q 044812 444 EMQDLAYKSLIQLE--PENPSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKK 494 (547)
Q Consensus 444 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 494 (547)
+....+|..+...+ ......|...+..+...|++++|.++|+.-.+++..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35556777776654 4445567777777777888888888887766665543
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.24 E-value=1.4e+02 Score=27.63 Aligned_cols=228 Identities=11% Similarity=-0.047 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCCh---HHHHhHHHHhhccCC-chh----HHHHHHHHHHcCCC-Cch
Q 044812 222 YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNK---VSLVSVLPTCSSLIG-LSG----GKQIHGFAIRKELN-HDV 292 (547)
Q Consensus 222 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~---~~~~~ll~~~~~~~~-~~~----a~~~~~~~~~~~~~-~~~ 292 (547)
.....|...|.+.|+.++..+++.....--+..|-. .....++..+....+ .+. ..+.+++.....-. ...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888889999999888888762222223322 335566666655433 222 23333333332100 011
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHH
Q 044812 293 SLCNALIDMYSKCGSLDCARRVFEDS----SFNKD-----AITWSSIVSGYGLHGKGHEAVLLYNKMVCL--GSKPDIIT 361 (547)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~ 361 (547)
.+=..++..|...|++.+|..++.++ . ..| ...|..-+..|...+++.++...+...... .+.|++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~-~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELK-KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 12236899999999999998888652 2 211 223666678899999999999999877543 23233332
Q ss_pred HHHH----HHHHh-ccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHhHhcCCHHHHHHHHH-----hCCCCCC
Q 044812 362 IVGV----LSACG-RSGLINEGLEIYNSVINTYRIKPT-----TEICACVVDMLGRAGQLDRALDFIK-----TMPVEPS 426 (547)
Q Consensus 362 ~~~l----~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~-----~~~~~p~ 426 (547)
-..+ ...+. ..+++..|...|-+..+.+.-.-+ ...|..+.... .++..+--.++. .. ..|.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhcccccccc-CCcc
Confidence 2221 22356 789999999888877654432111 22343333332 233222222221 11 2455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044812 427 PSIWGALVSASVMHGNSEMQDLAYKSLI 454 (547)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 454 (547)
...+..++.+ ...+++.....+++...
T Consensus 256 i~~l~~L~~a-~~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 256 IDAMKSVAEA-SHKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHH
Confidence 5556666665 45678877777766543
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=52.30 E-value=1.9e+02 Score=28.79 Aligned_cols=428 Identities=9% Similarity=-0.026 Sum_probs=221.9
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISN-PFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHG 101 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 101 (547)
|..+..+....+..+ ..++..-+.+..-.|- ...-+.-+..+.+.+++...++.+.. ...+...-.....+....|+
T Consensus 40 yl~y~~l~~~l~~~~-~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~ 117 (618)
T 1qsa_A 40 YLEYRQITDDLMNQP-AVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQ 117 (618)
T ss_dssp HHHHHHHHHTGGGCC-HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCC-HHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 444444443333222 2255555555533332 33445667778888999999987776 33344444456667778888
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 044812 102 HNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDE 181 (547)
Q Consensus 102 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 181 (547)
..+|......+-..|.. .+..+..++..+ .+.|.-.+...+. -+......|+...|..+...
T Consensus 118 ~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~----------------~~~g~lt~~~~~~-R~~~al~~~~~~~a~~l~~~ 179 (618)
T 1qsa_A 118 SEEAWQGAKELWLTGKS-QPNACDKLFSVW----------------RASGKQDPLAYLE-RIRLAMKAGNTGLVTVLAGQ 179 (618)
T ss_dssp HHHHHHHHHHHHSCSSC-CCTHHHHHHHHH----------------HHTTCSCHHHHHH-HHHHHHHTTCHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhCCCC-CcHHHHHHHHHH----------------HHCCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHh
Confidence 88888877777655432 344444444444 4434222222332 23455667777777777776
Q ss_pred CCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCCh---hhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChH
Q 044812 182 MPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNV---YAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKV 258 (547)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 258 (547)
+..........++..+.+-.+ +....... .++. ..+...+.-+.+ .+.+.|...+..........+...
T Consensus 180 l~~~~~~~a~~~~al~~~p~~------~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~ 251 (618)
T 1qsa_A 180 MPADYQTIASAIISLANNPNT------VLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQI 251 (618)
T ss_dssp CCGGGHHHHHHHHHHHHCGGG------HHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHHhChHh------HHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHH
Confidence 632221122333333322222 22222222 1221 122222333333 488999999988833333322222
Q ss_pred --HHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--ChhhHHHHHHHH
Q 044812 259 --SLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFEDSSFNK--DAITWSSIVSGY 334 (547)
Q Consensus 259 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~ 334 (547)
....+.......+...++...+....... .+.....-.+....+.|+++.|...|+.+...+ ......-+..++
T Consensus 252 ~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~ 329 (618)
T 1qsa_A 252 QELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLL 329 (618)
T ss_dssp HHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHH
Confidence 23333444455553556666666544432 333334445555667899999999999987332 222344566778
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC-chh-----HHHHHHHHhHhc
Q 044812 335 GLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP-TTE-----ICACVVDMLGRA 408 (547)
Q Consensus 335 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~-----~~~~l~~~~~~~ 408 (547)
...|+.++|..+|..+... . +|..++.+ .+.|..-. . ......+ ... .-..-+..+...
T Consensus 330 ~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~ 394 (618)
T 1qsa_A 330 LERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYW 394 (618)
T ss_dssp HHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHC
Confidence 8899999999999998752 2 23333321 12221000 0 0000001 000 111234556778
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCCchHHHHHHHHHcCCCHHHHHHHHH
Q 044812 409 GQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE---PENPSNYVSLSNLYASSRRWDAVAELRT 485 (547)
Q Consensus 409 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (547)
|....|...+.......+......+.......|....++....+....+ ..-|..|..++.-+.+.-.++.+.-.--
T Consensus 395 g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai 474 (618)
T 1qsa_A 395 NLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAI 474 (618)
T ss_dssp TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHH
T ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHH
Confidence 8888888877766323444444455555667788887776554432221 0113346666666666555555443322
Q ss_pred HHHhCCCccC
Q 044812 486 MMKDRGLKKS 495 (547)
Q Consensus 486 ~m~~~~~~~~ 495 (547)
-..+.++.|.
T Consensus 475 ~~~ES~f~p~ 484 (618)
T 1qsa_A 475 ARQESAWNPK 484 (618)
T ss_dssp HHHHHTTCTT
T ss_pred HHHhCCCCCC
Confidence 3345555543
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.10 E-value=65 Score=27.68 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=8.9
Q ss_pred HHHHcCCHHHHHHHHH
Q 044812 436 ASVMHGNSEMQDLAYK 451 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~ 451 (547)
..+..|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3455677665555544
No 282
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=51.92 E-value=93 Score=25.10 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 044812 291 DVSLCNALIDMYSKCGSLDCARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVC 352 (547)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 352 (547)
+..+-...+.++.+.|..+....+.+-+. .++...-...+.++.+.|. .++...+..+..
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 33344444444444444332222222233 4555555555555555554 344444444443
No 283
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.22 E-value=1.6e+02 Score=27.76 Aligned_cols=186 Identities=15% Similarity=0.089 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHchh----cCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHcCCCCchhHHHHHH----HHHHhcC
Q 044812 235 GDLDEALVLFLEMQL----KDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRKELNHDVSLCNALI----DMYSKCG 306 (547)
Q Consensus 235 ~~~~~A~~~~~~m~~----~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g 306 (547)
|+++.|++.+..+++ .............++..|...++++...+.+..+.+..-.. ......++ .......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 455666665544421 12233344556666666777777766666555544332111 11122222 2222223
Q ss_pred CHH--HHHHHHhcCC-C---CC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHh
Q 044812 307 SLD--CARRVFEDSS-F---NK-----DAITWSSIVSGYGLHGKGHEAVLLYNKMVCL--GSKPD---IITIVGVLSACG 370 (547)
Q Consensus 307 ~~~--~A~~~~~~~~-~---~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~l~~~~~ 370 (547)
..+ .-..+.+... + +. .......|...|...|++.+|..++..+... |..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222 2233333221 0 11 1123456778889999999999999988643 22222 345666777889
Q ss_pred ccCcHHHHHHHHHHHHHhc-CCC--Cc--hhHHHHHHHHhHhcCCHHHHHHHHHhC
Q 044812 371 RSGLINEGLEIYNSVINTY-RIK--PT--TEICACVVDMLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~-~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 421 (547)
..+++..|..+++++.... ... |+ ...+...+..+...+++.+|...|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999998874321 112 22 345667777888889999998877665
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.92 E-value=49 Score=31.92 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHH
Q 044812 360 ITIVGVLSACGRSGLINEGLEIYNSV 385 (547)
Q Consensus 360 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 385 (547)
..++.+++.|...+.++.|..+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 44555566666666666666666654
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.37 E-value=58 Score=27.65 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=47.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhC--CCCC----CcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044812 92 LINGYVKNHGHNEALELFSNMYYS--NVSP----DDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSM 165 (547)
Q Consensus 92 ll~~~~~~~~~~~A~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 165 (547)
-++.+...+++++|++++++..+. +.++ +.......+..-...+.-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 356777788888888887766542 2221 1122222233322222223333333333 22 3345555566778
Q ss_pred HHhcCChHHHHHHhccC
Q 044812 166 YVKCGKFSECLNLFDEM 182 (547)
Q Consensus 166 ~~~~g~~~~A~~~~~~~ 182 (547)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88889999888888553
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.22 E-value=1.1e+02 Score=24.10 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc
Q 044812 343 AVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394 (547)
Q Consensus 343 a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 394 (547)
+.++|..|...|+--. ...|......+...|++.+|.++|+.-++. +-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 5567777777766543 445566666667777777777777777665 55554
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.20 E-value=1.5e+02 Score=26.30 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCc
Q 044812 430 WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR--WDAVAELRTMMKDRGLK 493 (547)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~ 493 (547)
...++.=|...|+.++|.+.++++..-.-....+...+..++.+.++ .+....++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 45677778888999999888877632100001122233344444332 45566777777766654
No 288
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.79 E-value=1.7e+02 Score=27.28 Aligned_cols=298 Identities=9% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCChhHHH--HHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhhh
Q 044812 40 KQSHSQILSLGHISNPFVST--KLITAYALCGQPTQSQLVFNSIQH---KDVYLYNSLINGYVKNHGHNEALELFSNMYY 114 (547)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 114 (547)
..+.+.+.++|..|+..... +.+...+..|+.+-+.-+++.-.. .+...++.|..+..... .++++.+.+
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~ 101 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH-----TNMVKLLLE 101 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC-----HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC-----HHHHHHHHh
Q ss_pred CCCCCCcchHHH--HHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChh--hH
Q 044812 115 SNVSPDDFTLAT--ISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFDEMPQRNVG--SW 190 (547)
Q Consensus 115 ~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~ 190 (547)
.|..|+...... .+...+..|+.+.+..+++. ..........-.+.+...+..|+.+-+..+++.-..++.. .-
T Consensus 102 ~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 179 (437)
T 1n11_A 102 NNANPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179 (437)
T ss_dssp HTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSC
T ss_pred CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhH--HHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhh
Q 044812 191 NVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAW--TAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCS 268 (547)
Q Consensus 191 ~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 268 (547)
...+...+..|+.+- +.-+++.-..++...+ .+.+...+..|+.+-+..+++ ....+......-...+...+
T Consensus 180 ~t~L~~A~~~~~~~~---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~A~ 253 (437)
T 1n11_A 180 LTPLHVAVHHNNLDI---VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ---YGGSANAESVQGVTPLHLAA 253 (437)
T ss_dssp CCHHHHHHHTTCHHH---HHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH---TTCCTTCCCTTCCCHHHHHH
T ss_pred CCHHHHHHHcCCHHH---HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH---cCCCCCCCCCCCCCHHHHHH
Q ss_pred ccCCchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCChhhHHHHHHHHHhcCChHHHHH
Q 044812 269 SLIGLSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGSLDCARRVFED---SSFNKDAITWSSIVSGYGLHGKGHEAVL 345 (547)
Q Consensus 269 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~ 345 (547)
..|+.+.+..+++. ..........-.+.+...+..|+.+-+.-+++. .. ..+....+.|..+..... .+
T Consensus 254 ~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~-----~~ 325 (437)
T 1n11_A 254 QEGHAEMVALLLSK--QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-ATTRMGYTPLHVASHYGN-----IK 325 (437)
T ss_dssp HTTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCSSCCCHHHHHHHSSC-----SH
T ss_pred HCCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC-CCCCCCCCHHHHHHHcCc-----HH
Q ss_pred HHHHHHHcCCCCC
Q 044812 346 LYNKMVCLGSKPD 358 (547)
Q Consensus 346 ~~~~m~~~g~~p~ 358 (547)
+.+.+.+.|..++
T Consensus 326 ~v~~Ll~~gad~n 338 (437)
T 1n11_A 326 LVKFLLQHQADVN 338 (437)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHhcCCCCC
No 289
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=44.51 E-value=1.2e+02 Score=24.34 Aligned_cols=11 Identities=9% Similarity=0.024 Sum_probs=5.2
Q ss_pred HHHHHHHcCCC
Q 044812 346 LYNKMVCLGSK 356 (547)
Q Consensus 346 ~~~~m~~~g~~ 356 (547)
+-.++...|+.
T Consensus 89 I~~eL~~KGI~ 99 (177)
T 3e3v_A 89 IKLNLSKKGID 99 (177)
T ss_dssp HHHHHHTTTCC
T ss_pred HHHHHHHcCCC
Confidence 34444555544
No 290
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.46 E-value=1.6e+02 Score=25.55 Aligned_cols=19 Identities=5% Similarity=-0.204 Sum_probs=10.6
Q ss_pred HHHHHhcCCchhHHHHhcc
Q 044812 62 ITAYALCGQPTQSQLVFNS 80 (547)
Q Consensus 62 ~~~~~~~~~~~~A~~~~~~ 80 (547)
+...+..|+.+.+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334455666666666655
No 291
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.75 E-value=1.3e+02 Score=24.43 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=20.8
Q ss_pred CCcchHHHHHHHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 119 PDDFTLATISKLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 119 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
+|...-...+..+...++.+....+. .+.. .++..+-...+.++.+.|+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~ 80 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDE 80 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCH
Confidence 34444444555555554432222222 2222 23444444444555554443
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.64 E-value=1.2e+02 Score=25.37 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCC
Q 044812 341 HEAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKP 393 (547)
Q Consensus 341 ~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 393 (547)
+.+.++|..|...|+--. ...|......+...|++.+|.++|+.-++. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 455677777777766543 445566666667777777777777776665 4455
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.54 E-value=60 Score=24.93 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=30.2
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044812 310 CARRVFEDSSFNKDAITWSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373 (547)
Q Consensus 310 ~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 373 (547)
.+.+.+++.|++.+ ..-..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 8 ~~~~~l~~~g~r~T-~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 8 EALETLKETGVRIT-PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHTTCCCC-HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444444443222 2223344444444445556666666665555555555554455444444
No 294
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=43.15 E-value=11 Score=25.88 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCcCCC
Q 044812 517 HPCSVSIYEMLDDLILIMRGAAASPHL 543 (547)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~p~~ 543 (547)
.++-..+++.+++...+++..|+.||.
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDI 38 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDI 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 456678889999999999999999994
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.13 E-value=54 Score=24.64 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCC--chhHHHHHHHHHHcCC
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG--LSGGKQIHGFAIRKEL 288 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 288 (547)
...++.-|...|+.++|.+.++++ ..... ........+..++-+.++ .+.+..++..+.+.|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL-~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKEL-EVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-TCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh-CCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 456778888888999999988887 31111 112223334444444321 3445555655555553
No 296
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=40.59 E-value=43 Score=23.65 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHH
Q 044812 41 QSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALE 107 (547)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 107 (547)
.+++.+.+.|+- +......+-. .....+.+.|.++++.+++....+|..++.++...|+..-|..
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 477777777743 3333333222 1012467888888888888888888888888876666555443
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.58 E-value=1.2e+02 Score=22.74 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCCh---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 044812 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDA---ITWSSIVSGYGLHGK--GHEAVLLYNKMVCLGSKPD 358 (547)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 358 (547)
...++.-|...|+.++|.+.+++++ .|.- .....+..++-+.++ .+....++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~-~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT-CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888888899999999999987 5532 223444445555432 3566777777777665443
No 298
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.25 E-value=97 Score=29.86 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=25.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHH
Q 044812 434 VSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481 (547)
Q Consensus 434 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 481 (547)
+.........+.|...|.++....|.+...|+.|+......|+.-+|.
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 333334444555555555555555555555555555555555544444
No 299
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.10 E-value=88 Score=24.18 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044812 328 SSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373 (547)
Q Consensus 328 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 373 (547)
..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444444445556666666655554555555444444444444
No 300
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.38 E-value=1.7e+02 Score=23.88 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCCCCHH--H-----HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHc
Q 044812 411 LDRALDFIKTMPVEPSPS--I-----WGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYAS 473 (547)
Q Consensus 411 ~~~A~~~~~~~~~~p~~~--~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 473 (547)
++.|+.+|+.+.-.-+.. . -...+..|.+.|.+++|.+++++.....+.+...-..|...-.+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 455666666663222211 1 12234567788888888888888776665554444444444333
No 301
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=37.31 E-value=79 Score=21.94 Aligned_cols=63 Identities=19% Similarity=0.156 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHH
Q 044812 39 TKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEA 105 (547)
Q Consensus 39 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 105 (547)
...+++.+.+.|+- +...+..+.. .....++|.++++.+++....+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 56788888888854 4444444433 357888999999999988888999999988887754433
No 302
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.99 E-value=1.3e+02 Score=24.54 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHHHH---HCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCC
Q 044812 224 WTAMINGYV---QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272 (547)
Q Consensus 224 ~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 272 (547)
+..+|+++. +-.+.+.|+-++-+| .+.| .|....-..++.+....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRm-l~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARL-VEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcC-CHHHHHHHHHHHHHhhccC
Confidence 344566654 457888888888888 7777 6665555555555555443
No 303
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.71 E-value=2.3e+02 Score=25.17 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc--HHHHHHHHHHHHHh
Q 044812 327 WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSGL--INEGLEIYNSVINT 388 (547)
Q Consensus 327 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~ 388 (547)
...++.-|...|+.++|.+.++++......+ ......+..++.+.++ .+....++..+.+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 5567777888888888888888875321111 2344455555555432 34556677777655
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.76 E-value=70 Score=24.89 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=35.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCC--chhHHHHHHHHHHcCC
Q 044812 224 WTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG--LSGGKQIHGFAIRKEL 288 (547)
Q Consensus 224 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 288 (547)
.+.++.-|...|+.++|.+.++++ ... .-........+..++-+.++ .+.+..++..+.+.++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL-~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL-EVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-TCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh-CCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 456788888889999999999888 211 11112233334444444222 3445555555555553
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.36 E-value=1.1e+02 Score=23.81 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCCh---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 044812 295 CNALIDMYSKCGSLDCARRVFEDSSFNKDA---ITWSSIVSGYGLHGK--GHEAVLLYNKMVCLGSKPD 358 (547)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 358 (547)
...++.-|...|+.++|.+.+++++ .|.. .....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~-~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE-VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT-CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888888999999999999987 4532 223444445554332 4456677777777665443
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.99 E-value=1.8e+02 Score=25.11 Aligned_cols=91 Identities=10% Similarity=0.098 Sum_probs=43.3
Q ss_pred HHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHH
Q 044812 402 VDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVA 481 (547)
Q Consensus 402 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 481 (547)
+...+..|+.+-+.-+++.-....+...-.+.+...+..|+.+-+.-+++.-...+..+...+...+......|+ .
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~----~ 208 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD----I 208 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC----H
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC----H
Confidence 344455677666665655542222221112233344567777777777766555443232222221122223344 3
Q ss_pred HHHHHHHhCCCccCC
Q 044812 482 ELRTMMKDRGLKKSP 496 (547)
Q Consensus 482 ~~~~~m~~~~~~~~~ 496 (547)
++++.+.+.|..++.
T Consensus 209 ~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 209 EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHTTSCBCSTT
T ss_pred HHHHHHHHcCCCCCC
Confidence 455555666766554
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.51 E-value=4.4e+02 Score=27.90 Aligned_cols=126 Identities=9% Similarity=-0.059 Sum_probs=72.3
Q ss_pred HHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCC
Q 044812 193 RISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272 (547)
Q Consensus 193 li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 272 (547)
++..+...|..+- +.++..-.+. +...--.+..+|...|++++|...|++. ..|+..+......
T Consensus 816 l~~~L~~~~~~~~---a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA--A~gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNA---CMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHH---HHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCTTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHH---HHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH--hhhcccCcccccc----------
Confidence 5666777777765 5555555544 4444456889999999999999999987 3444332211000
Q ss_pred chhHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhc----CCCCCCh----hhHHHHHHHHHhcC
Q 044812 273 LSGGKQIHGFAIRKEL-NHDVSLCNALIDMYSKCGSLDCARRVFED----SSFNKDA----ITWSSIVSGYGLHG 338 (547)
Q Consensus 273 ~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~----~~~~~li~~~~~~~ 338 (547)
......++. .... .....-|..++..+.+.+.++.+.++-+- +. .-|. ..|+.+.++.+..|
T Consensus 880 ~~~~~~ll~---~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAE---KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHH---HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccC---cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 000011111 1100 11223577888888888988888776653 22 2222 24777777766544
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.37 E-value=72 Score=25.12 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=18.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhcc
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCL--GSKPDIITIVGVLSACGRS 372 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~ 372 (547)
++..+...++.-.|.++++.+.+. +...+..|...-+..+...
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~ 82 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEA 82 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC
Confidence 333344444444445555554444 3333444433333333333
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.11 E-value=4.3e+02 Score=28.02 Aligned_cols=127 Identities=9% Similarity=-0.027 Sum_probs=71.3
Q ss_pred HHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCCCcHH
Q 044812 60 KLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIKDLNV 139 (547)
Q Consensus 60 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 139 (547)
.++..+...|.++-|.++....+. ++..--.+..+|...|++++|...|++.- .|+..+....... ..
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~----------~~ 882 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVL----------RE 882 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGG----------HH
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccch----------hh
Confidence 367778888999988887777775 33333356678899999999999998864 2443222111000 00
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhc----cCCCCChh----hHHHHHHHHHcC
Q 044812 140 GMLIHGLSIKIGFVVDVILANSLMSMYVKCGKFSECLNLFD----EMPQRNVG----SWNVRISGHASS 200 (547)
Q Consensus 140 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----~~~~~~~~----~~~~li~~~~~~ 200 (547)
...++... +. ......-|..++..|-+.+.++.+..+-+ .+...|.. .|+.+..+.+..
T Consensus 883 ~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 883 FQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 11111100 00 01122367778888888888777655433 33333332 455555555543
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.55 E-value=1.4e+02 Score=23.79 Aligned_cols=19 Identities=5% Similarity=-0.018 Sum_probs=11.3
Q ss_pred HHHHHhcCCHHHHHHHHhc
Q 044812 299 IDMYSKCGSLDCARRVFED 317 (547)
Q Consensus 299 ~~~~~~~g~~~~A~~~~~~ 317 (547)
+...+..|+.+-+..+++.
T Consensus 76 l~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 76 YLYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3444556777766666644
No 311
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=32.00 E-value=1.8e+02 Score=22.58 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCc
Q 044812 342 EAVLLYNKMVCLGSKPD-IITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPT 394 (547)
Q Consensus 342 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 394 (547)
.+.++|..|...|+--. ..-|......+...|++.+|.++|+.-++. +-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 37788888888876554 456667777778888888888888887766 55553
No 312
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.40 E-value=1.8e+02 Score=24.53 Aligned_cols=88 Identities=9% Similarity=-0.048 Sum_probs=39.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044812 330 IVSGYGLHGKGHEAVLLYNKMVCL--GSKP----DIITIVGVLSACGRSGLINEGLEIYNSVINTYRIKPTTEICACVVD 403 (547)
Q Consensus 330 li~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (547)
-++.+....++++|..++++..+. ++++ +.......+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHH
Confidence 456667777777777777765432 2221 0011112222222222222233333333 11 233444444556
Q ss_pred HhHhcCCHHHHHHHHHhC
Q 044812 404 MLGRAGQLDRALDFIKTM 421 (547)
Q Consensus 404 ~~~~~g~~~~A~~~~~~~ 421 (547)
.+.+.|+.++|.++|=+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 666666666666666443
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.78 E-value=1.8e+02 Score=23.85 Aligned_cols=42 Identities=7% Similarity=-0.038 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCChh--HHHHHHHHHHhcCCchhHHHHhccCCC
Q 044812 42 SHSQILSLGHISNPF--VSTKLITAYALCGQPTQSQLVFNSIQH 83 (547)
Q Consensus 42 ~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~ 83 (547)
+++.+.+.|..++.. .-.+.+...+..|+.+-+.-+++.-..
T Consensus 24 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 67 (240)
T 3eu9_A 24 RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67 (240)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc
Confidence 344444566554322 112344555666777777766665443
No 314
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.35 E-value=1e+02 Score=23.05 Aligned_cols=50 Identities=10% Similarity=0.077 Sum_probs=40.3
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCch
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 72 (547)
-..++.+|...+....|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 35566677777788999999999999987778888778889999888554
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.54 E-value=1.6e+02 Score=23.03 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=46.2
Q ss_pred HHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCCchhHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCC
Q 044812 237 LDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIGLSGGKQIHGFAIRK--ELNHDVSLCNALIDMYSKCGS 307 (547)
Q Consensus 237 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 307 (547)
.+.+++-+.+...+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34555555554466778776543 44556666667778899999998887 666666666656666666663
No 316
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=29.16 E-value=1.1e+02 Score=22.90 Aligned_cols=55 Identities=13% Similarity=-0.066 Sum_probs=27.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 044812 436 ASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRRWDAVAELRTMMKDR 490 (547)
Q Consensus 436 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 490 (547)
.+...++.+...++++.+.+.-...|.+.....-.-.-..+..+|.+.+++..+.
T Consensus 49 lyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~~L~~A~~~~~~y~~t 103 (126)
T 2npu_A 49 LYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKS 103 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4456677777777776663321111233333333333334566666666666543
No 317
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.99 E-value=2.7e+02 Score=23.75 Aligned_cols=14 Identities=0% Similarity=0.043 Sum_probs=5.5
Q ss_pred chhHHHHHHHHHHh
Q 044812 155 DVILANSLMSMYVK 168 (547)
Q Consensus 155 ~~~~~~~l~~~~~~ 168 (547)
+..+....+.++.+
T Consensus 104 ~~~vr~~a~~aL~~ 117 (280)
T 1oyz_A 104 SACVRATAIESTAQ 117 (280)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 33333334444433
No 318
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=28.88 E-value=3.1e+02 Score=24.42 Aligned_cols=129 Identities=9% Similarity=-0.003 Sum_probs=70.0
Q ss_pred ChhHHHHHHHHhhhC-C----CCCCcchHHHHH---HHHccCCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 101 GHNEALELFSNMYYS-N----VSPDDFTLATIS---KLSGEIKDLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 101 ~~~~A~~~~~~m~~~-~----~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
+-++|..+|..+... + ..|+.......+ ..+.+..+ -++++.+.+.|+.|...++.-++..|.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456788888777643 1 234433322211 11222112 24666777778888888888888888777778
Q ss_pred HHHHHHhccCCCCChh--hHHH--HHH----HHHcCCCchhHHHHHHHHhh-cCCCChhhHHHHHHHHHHCCC
Q 044812 173 SECLNLFDEMPQRNVG--SWNV--RIS----GHASSGDFSLVVRSRRVFDQ-MKRRNVYAWTAMINGYVQNGD 236 (547)
Q Consensus 173 ~~A~~~~~~~~~~~~~--~~~~--li~----~~~~~g~~~~a~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~ 236 (547)
+.+..+++-+...+.. .+-. ++. ......+.+. ....+.. .+..+......++.-......
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~---il~~l~~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLET---IVDFIKSTLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHH---HHHHHHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHH---HHHHHHhhCCCCCHHHHHHHHHHHHhCCc
Confidence 8888888766532221 1111 111 1223334444 7777766 444455555666655555544
No 319
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.81 E-value=1.3e+02 Score=19.98 Aligned_cols=61 Identities=8% Similarity=0.006 Sum_probs=36.2
Q ss_pred HhhhCCCCCCcchHHHHHHHHccCC-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 044812 111 NMYYSNVSPDDFTLATISKLSGEIK-DLNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGKF 172 (547)
Q Consensus 111 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 172 (547)
.|.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3555666655443 34445555543 4556677777777666555666666666666666643
No 320
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.00 E-value=2.3e+02 Score=22.59 Aligned_cols=76 Identities=12% Similarity=0.003 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCCc-----------------hHHHHHH
Q 044812 408 AGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLE-PENPS-----------------NYVSLSN 469 (547)
Q Consensus 408 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----------------~~~~l~~ 469 (547)
.|.+.+++-++.... ...+.---.-+|-+.+++..|+..++.+++-+ ..+|. .+..++.
T Consensus 46 ngEY~R~Lf~L~~lN---T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 46 NGEYTRALFHLHKLN---TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp TTCHHHHHHHHHTCC---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred cchHhHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Q ss_pred HHHcCCCHHHHHHHHHH
Q 044812 470 LYASSRRWDAVAELRTM 486 (547)
Q Consensus 470 ~~~~~g~~~~A~~~~~~ 486 (547)
.+...|+.+||+..+..
T Consensus 123 lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhh
No 321
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=27.58 E-value=94 Score=27.01 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=47.7
Q ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHhCCCccCCccceEeeCCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCc
Q 044812 461 PSNYVSLSNLYASSRRWDAVAELRTMMKDRGLKKSPGCSWISIHGKTHCFSVADKAHPCSVSIYEMLDDLILIMRGAAAS 540 (547)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (547)
|.+...|..++...|++.+|.++...+-+.....-. . | ..++-.+....+.+.+..|.+.|..
T Consensus 200 Pelvl~Lh~vl~~a~~~~~~~~LA~~VA~e~~~ly~----~--------F-----~k~rL~Ell~~ia~sSl~ll~~~~d 262 (270)
T 3cqc_A 200 PMLCFLLHTILHSTGQYQECLQLADMVSSERHKLYL----V--------F-----SKEELRKLLQKLRESSLMLLDQGLD 262 (270)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTHHHHHHCTTTCGGG----G--------S-----CHHHHHHHHHHHHHHHHHHHTTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHH----H--------h-----hHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 346777888999999999999999988665442111 1 1 1236677888888888899999988
Q ss_pred CC
Q 044812 541 PH 542 (547)
Q Consensus 541 p~ 542 (547)
|-
T Consensus 263 p~ 264 (270)
T 3cqc_A 263 PL 264 (270)
T ss_dssp TT
T ss_pred Cc
Confidence 86
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.42 E-value=1.2e+02 Score=22.84 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcc-CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchh
Q 044812 23 VQHFLQVSATHR-SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73 (547)
Q Consensus 23 ~~~~~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 73 (547)
-..++.+|...+ ....|.++++.+.+.+...+..|.-.-++.+...|-+.+
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 445555666665 677888888888888777777777777788887775543
No 323
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.38 E-value=1.6e+02 Score=23.98 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=33.0
Q ss_pred HHHHHHHHH---HCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccC
Q 044812 224 WTAMINGYV---QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLI 271 (547)
Q Consensus 224 ~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 271 (547)
+..+|+++. +-.+.+.|+-++-+| .+.|-.|....-..++.+....|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRM-l~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARI-LTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhhcc
Confidence 334566654 457899999999999 88888777666666666655544
No 324
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.30 E-value=1.1e+02 Score=19.74 Aligned_cols=52 Identities=15% Similarity=0.010 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCch
Q 044812 20 SATVQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72 (547)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 72 (547)
.|.+..+..+++...-++++.-.+++.+++| ..+...|-.-++.+++..=+.
T Consensus 2 ~pl~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~~ 53 (65)
T 2f6m_A 2 TDGLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFLV 53 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 3557788888888889999999999999998 567777777777777654333
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.16 E-value=1.3e+02 Score=23.25 Aligned_cols=48 Identities=4% Similarity=-0.096 Sum_probs=27.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCc
Q 044812 24 QHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQP 71 (547)
Q Consensus 24 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 71 (547)
..++.++...+....|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 344444555555666666666666665555555555555666665543
No 326
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.82 E-value=98 Score=23.73 Aligned_cols=42 Identities=12% Similarity=0.011 Sum_probs=20.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044812 331 VSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG 373 (547)
Q Consensus 331 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 373 (547)
+..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 25 l~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 25 LEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 33333334 4456666666665555555555444444444433
No 327
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.74 E-value=1.5e+02 Score=24.61 Aligned_cols=23 Identities=0% Similarity=0.089 Sum_probs=13.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh
Q 044812 467 LSNLYASSRRWDAVAELRTMMKD 489 (547)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~m~~ 489 (547)
.+..|.+.|.+++|.+++++...
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHhcchHHHHHHHHHHhc
Confidence 34455566666666666665543
No 328
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.21 E-value=1e+02 Score=23.41 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=40.4
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCchh
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPTQ 73 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 73 (547)
-..++.++...+....|.++++.+.+.+...+..|.-.-++.+...|-+.+
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 455666777777788999999999998877888887777888888886543
No 329
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.10 E-value=1.3e+02 Score=22.98 Aligned_cols=44 Identities=5% Similarity=-0.088 Sum_probs=21.2
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 044812 26 FLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCG 69 (547)
Q Consensus 26 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 69 (547)
++.+|...+....|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33344444444555555555555544444444444455555544
No 330
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.76 E-value=2.8e+02 Score=22.75 Aligned_cols=83 Identities=7% Similarity=0.020 Sum_probs=45.8
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCCchhHHHHhccCCCC---CcchHHHHHHHHHhcCChh
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISNPFV--STKLITAYALCGQPTQSQLVFNSIQHK---DVYLYNSLINGYVKNHGHN 103 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~ 103 (547)
.....|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ +...++. +...+..|+.+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~ 93 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRSPT 93 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCCHH
Confidence 33456787777778877777776555321 123344455667777777666654332 2222223 33344566666
Q ss_pred HHHHHHHHh
Q 044812 104 EALELFSNM 112 (547)
Q Consensus 104 ~A~~~~~~m 112 (547)
-...+++..
T Consensus 94 ~~~~Ll~~~ 102 (241)
T 1k1a_A 94 CLRALLDSA 102 (241)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 555555544
No 331
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.22 E-value=2.9e+02 Score=22.80 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=35.5
Q ss_pred ChhhHHHHHHHHH---HCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHhhccCC
Q 044812 220 NVYAWTAMINGYV---QNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTCSSLIG 272 (547)
Q Consensus 220 ~~~~~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 272 (547)
+...+..+|+++. +-.+.+.|+-++-+| .+.|-.|....-..++.+....|.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRM-l~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANM-VEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhhccC
Confidence 3344555666665 458999999999999 888888877766666666655543
No 332
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.70 E-value=4e+02 Score=24.23 Aligned_cols=216 Identities=10% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHhhcCCC---ChhhHHHHHHHHHHCCCHHHHHHHHHHchhcCCCCCChHHHHhHHHHh
Q 044812 191 NVRISGHASSGDFSLVVRSRRVFDQMKRR---NVYAWTAMINGYVQNGDLDEALVLFLEMQLKDRIEPNKVSLVSVLPTC 267 (547)
Q Consensus 191 ~~li~~~~~~g~~~~a~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 267 (547)
..+|.-|...++.++ +...++++..| ....-..+..++-+...-.+....+-.- ...++-+.......+...+
T Consensus 58 ~~ii~EYf~~~d~~E---a~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~-L~~~~ls~~~i~~gf~~ll 133 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNE---VAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSD-LCGTVMSTNDVEKSFDKLL 133 (358)
T ss_dssp HHHHHHHHHHCCHHH---HHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHT-TTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHH---HHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHH
Q ss_pred hccCC--------chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--HHHHHHHHh--------------cCCCCCC
Q 044812 268 SSLIG--------LSGGKQIHGFAIRKELNHDVSLCNALIDMYSKCGS--LDCARRVFE--------------DSSFNKD 323 (547)
Q Consensus 268 ~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~--------------~~~~~~~ 323 (547)
....+ .+..-.++..++..++-|-..........-+..|. +..|..++. .-+..|.
T Consensus 134 e~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~v 213 (358)
T 3eiq_C 134 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPV 213 (358)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCH
T ss_pred HhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccH
Q ss_pred hhh---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHhcCCCCchhHH
Q 044812 324 AIT---WSSIVSGYGLHGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRSG--LINEGLEIYNSVINTYRIKPTTEIC 398 (547)
Q Consensus 324 ~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (547)
... .+.++.-|...|+.++|.+.++++....+.+... ...+..++.+.+ ..+....++..+... |+-+.....
T Consensus 214 eelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V-~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~q~~ 291 (358)
T 3eiq_C 214 NHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELV-YEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHH-HHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHH-HHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHHHHH
Q ss_pred HHHHHHhHhcCCHH
Q 044812 399 ACVVDMLGRAGQLD 412 (547)
Q Consensus 399 ~~l~~~~~~~g~~~ 412 (547)
..+...+....++.
T Consensus 292 ~Gf~~vl~~ldDl~ 305 (358)
T 3eiq_C 292 RGYERIYNEIPDIN 305 (358)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHhh
No 333
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.64 E-value=1.2e+02 Score=21.33 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=16.2
Q ss_pred ChHHHHHHhccCCCCChhhHHHHHHHHHcCCC
Q 044812 171 KFSECLNLFDEMPQRNVGSWNVRISGHASSGD 202 (547)
Q Consensus 171 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 202 (547)
..+.|.++++.+..++...|..++.++...|+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCc
Confidence 45555555555555555455544444444343
No 334
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.20 E-value=2.9e+02 Score=22.48 Aligned_cols=109 Identities=13% Similarity=0.006 Sum_probs=49.3
Q ss_pred HHHhcCCchhHHHHhccCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcch---HHHHHHHHccCCCc
Q 044812 64 AYALCGQPTQSQLVFNSIQHK---DVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFT---LATISKLSGEIKDL 137 (547)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~ 137 (547)
..++.|+.+....+++.-..+ +....+ .+...++.|+.+-+ +.+.+.|..++... -...+...+..|+.
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~ 89 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQPDKENVT-LLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred HHHHcCChHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence 345667877777777654332 222222 34445566665433 33344443332211 11223333444554
Q ss_pred HHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChHHHHHHhcc
Q 044812 138 NVGMLIHGLSIKIGFVVDVIL--ANSLMSMYVKCGKFSECLNLFDE 181 (547)
Q Consensus 138 ~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 181 (547)
+ +++.+.+.|..++... -...+...+..|+.+-+..+++.
T Consensus 90 ~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 90 S----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp H----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred H----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 4 3344445554443211 11223344555666655555543
No 335
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.19 E-value=3.9e+02 Score=23.97 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC---ChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044812 295 CNALIDMYSKCGSLDCARRVFEDSSFNK---DAITWSSIVSGYGL-HGKGHEAVLLYNKMVCLGSKPDIITIVGVLSACG 370 (547)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 370 (547)
...++.-|...|+.++|.+.+++++ .| .......+..++-+ ....+.+..++..+.+.|+-+.......+-..+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~-~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA-SPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC-CGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-CcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Q ss_pred ccCc--------HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 044812 371 RSGL--------INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAGQLDRALDFIKTMPVEPSPSIWGALVSASVMHGN 442 (547)
Q Consensus 371 ~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 442 (547)
...+ +.....+...+... |+-|-...+..+...+...|. .......++..+.+...
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v~~~i~~-g~l~~~~l~~~~~~~l~~~g~---------------~~~fl~~vl~~l~~~~g 156 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELVTPILQE-GGVPMGELFREITKPLRPLGK---------------AASLLLEILGLLCKSMG 156 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHHGGGGST-TSCCHHHHHHHHTTTHHHHTC---------------HHHHHHHHHHHHHHHHC
T ss_pred hChHhhcCccchHHHHHHHHHHHHHC-CCCCHHHHHHHHHHhhhccch---------------HHHHHHHHHHHHHHHcC
Q ss_pred HHHHHHHHHH
Q 044812 443 SEMQDLAYKS 452 (547)
Q Consensus 443 ~~~a~~~~~~ 452 (547)
.+.+..+|.+
T Consensus 157 ~~~l~~~~~~ 166 (339)
T 1ug3_A 157 PKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 336
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.69 E-value=3.4e+02 Score=23.09 Aligned_cols=115 Identities=9% Similarity=-0.048 Sum_probs=53.2
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChh----HHHHHHHHhhhCCCCCCcchHHHH
Q 044812 52 ISNPFVSTKLITAYALCGQPTQSQLVFNSIQHKDVYLYNSLINGYVKNHGHN----EALELFSNMYYSNVSPDDFTLATI 127 (547)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~A~~~~~~m~~~~~~p~~~~~~~l 127 (547)
.+++.+-...+.++.+.|..+....+.+.+..++...-...+.++.+.+... ..+.++..+... .++...-...
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~~a 111 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATA 111 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHHHH
Confidence 3455555556666666665444444444455566555555666666665322 222333322111 1344444444
Q ss_pred HHHHccCCC-----cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044812 128 SKLSGEIKD-----LNVGMLIHGLSIKIGFVVDVILANSLMSMYVKCGK 171 (547)
Q Consensus 128 ~~~~~~~~~-----~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 171 (547)
+.++...+. ...+...+..+. -.++..+-...+.++...|+
T Consensus 112 ~~aL~~l~~~~~~~~~~~~~~L~~~l---~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 112 IESTAQRCKKNPIYSPKIVEQSQITA---FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHT---TCSCHHHHHHHHHHHHTC--
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHh---hCCCHHHHHHHHHHHHhcCC
Confidence 455444331 122222222222 23455555555666666555
No 337
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.58 E-value=1.6e+02 Score=22.20 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=20.0
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 044812 330 IVSGYGLHG-KGHEAVLLYNKMVCLGSKPDIITIVGVLSACGRS 372 (547)
Q Consensus 330 li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 372 (547)
++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 334444333 4445555565555554444544444444444433
No 338
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.17 E-value=1.5e+02 Score=22.66 Aligned_cols=49 Identities=10% Similarity=-0.043 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCch
Q 044812 23 VQHFLQVSATHRSLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72 (547)
Q Consensus 23 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 72 (547)
-..++.++...+ ...|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 21 R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 21 RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 344555566666 7788888888888877777777666778888777543
No 339
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.13 E-value=2.8e+02 Score=21.89 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=7.3
Q ss_pred HhcCCchhHHHHhcc
Q 044812 66 ALCGQPTQSQLVFNS 80 (547)
Q Consensus 66 ~~~~~~~~A~~~~~~ 80 (547)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 334555555555543
No 340
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.05 E-value=2.1e+02 Score=23.29 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHH---hcCChhHHHHHHHHhhhCCCCCCcchHHHHHHHHccCC
Q 044812 92 LINGYV---KNHGHNEALELFSNMYYSNVSPDDFTLATISKLSGEIK 135 (547)
Q Consensus 92 ll~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 135 (547)
+|+++. +..+++.|+-.+-+|++.|-.|....-..++-+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 455554 45889999999999999887666555555555554444
No 341
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.19 E-value=1.3e+02 Score=23.12 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHhHhcC
Q 044812 375 INEGLEIYNSVINTYRIKPTTEICACVVDMLGRAG 409 (547)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (547)
.-.|.++++.+.+. +...+..|.-.-++.+...|
T Consensus 33 h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCC
Confidence 33455555555433 22223333333344444444
No 342
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=22.10 E-value=2.6e+02 Score=21.19 Aligned_cols=111 Identities=12% Similarity=0.022 Sum_probs=52.9
Q ss_pred HHHHHhcCCchhHHHHhccCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCcchH--HHHHHHHccCC
Q 044812 62 ITAYALCGQPTQSQLVFNSIQH----KDVYLYNSLINGYVKNHGHNEALELFSNMYYSNVSPDDFTL--ATISKLSGEIK 135 (547)
Q Consensus 62 ~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~ 135 (547)
+...++.|+.+....+++.-.. .+..-++.|. ..+..|+.+ +++.+.+.|..++.... .+.+...+..|
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 86 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNACSYG 86 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHH-HHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence 3445566888888888764331 2222233333 334556643 44444555555543321 12333334455
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcCChHHHHHHhcc
Q 044812 136 DLNVGMLIHGLSIKIGFVVDVILA--NSLMSMYVKCGKFSECLNLFDE 181 (547)
Q Consensus 136 ~~~~a~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 181 (547)
+.+ +.+.+++.|..++.... .+.+...+..|+.+-+..+++.
T Consensus 87 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 87 HYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130 (165)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 554 33444455544432211 1233344556666666555544
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.08 E-value=1.5e+02 Score=22.89 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcc-CchHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCch
Q 044812 23 VQHFLQVSATHR-SLKLTKQSHSQILSLGHISNPFVSTKLITAYALCGQPT 72 (547)
Q Consensus 23 ~~~~~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 72 (547)
-..++.+|...+ ....|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 344555565555 67788888888888877777777777778888877554
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.01 E-value=1.1e+02 Score=22.97 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=10.6
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCC
Q 044812 93 INGYVKNHGHNEALELFSNMYYSN 116 (547)
Q Consensus 93 l~~~~~~~~~~~A~~~~~~m~~~~ 116 (547)
+..+...+.+-.|.++++.+.+.+
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~ 40 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRG 40 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhC
Confidence 333333444444444444444443
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.71 E-value=1.7e+02 Score=23.01 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCC--CcchHHHHHH------HHccCCCcHHHHHHHHHHHHh
Q 044812 95 GYVKNHGHNEALELFSNMYYSNVSP--DDFTLATISK------LSGEIKDLNVGMLIHGLSIKI 150 (547)
Q Consensus 95 ~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 150 (547)
.+...|++-+|-++|+..-.....| +...|..||+ ...+.|+...|..++......
T Consensus 41 ~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 41 RLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
No 346
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.33 E-value=2.3e+02 Score=23.79 Aligned_cols=52 Identities=13% Similarity=-0.026 Sum_probs=30.4
Q ss_pred HHHhccCchHHHHHHHHHHHhCCCCChhH-------HHHHHHHHH--hcCCchhHHHHhcc
Q 044812 29 VSATHRSLKLTKQSHSQILSLGHISNPFV-------STKLITAYA--LCGQPTQSQLVFNS 80 (547)
Q Consensus 29 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~l~~~~~--~~~~~~~A~~~~~~ 80 (547)
.....|+.+..+.+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 34456788888888888888877666433 233333221 45666666555544
No 347
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=21.16 E-value=1.9e+02 Score=29.10 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHcCCC
Q 044812 411 LDRALDFIKTMPVEPSPSIWGALVSASVMHGNSEMQDLAYKSLIQLEPENPSNYVSLSNLYASSRR 476 (547)
Q Consensus 411 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (547)
.+.|.++.+-|+ .........+.....|++.-|.++.+.++..+|+|..+-..++.+|.+.|.
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 356667777775 344444456667789999999999999999999999988888888877663
No 348
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.93 E-value=3.6e+02 Score=22.36 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=16.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHH
Q 044812 366 LSACGRSGLINEGLEIYNSVIN 387 (547)
Q Consensus 366 ~~~~~~~g~~~~a~~~~~~~~~ 387 (547)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3457788888888888887764
No 349
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.54 E-value=68 Score=20.15 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=18.1
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHHH
Q 044812 102 HNEALELFSNMYYSNVSPDDFTLATISKLS 131 (547)
Q Consensus 102 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 131 (547)
.++|.+.|.+|++..-.+..-||.-.++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777776543334556666666655
No 350
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.47 E-value=6.6e+02 Score=25.19 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=41.0
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhhHHHHHHHHHcCCCchhHHHHHHHHhhcCCCChhhHHHHHHHHHH---CCCHH
Q 044812 162 LMSMYVKCGKFSECLNLFDEMPQRNVGSWNVRISGHASSGDFSLVVRSRRVFDQMKRRNVYAWTAMINGYVQ---NGDLD 238 (547)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~a~~~~~~~~~~~~~~~~~li~~~~~---~~~~~ 238 (547)
...++.-.|+++.|++.+-+....+.+.+ .-++...|-... ...++..-......-+..||..|.+ ..+..
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~~~vdAVH~---AIaL~~~gLL~~---~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~ 373 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTFSEMDAVHL---AIGLASLKLFKI---DSSTRLTKKPKRDIRFANILANYTKSFRYSDPR 373 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHH---HHHHHHTTC--------------------CHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHHhcCchhHHHH---HHHHHHcCCccC---CCcccccCCCcccccHHHHHHHHHHHhhcCCHH
Confidence 44556678999999998887632233333 233333333321 1111111111113346778877765 47888
Q ss_pred HHHHHHHHc
Q 044812 239 EALVLFLEM 247 (547)
Q Consensus 239 ~A~~~~~~m 247 (547)
.|+++|--+
T Consensus 374 ~Al~Y~~li 382 (661)
T 2qx5_A 374 VAVEYLVLI 382 (661)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHH
Confidence 999988766
No 351
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.21 E-value=1.1e+02 Score=19.17 Aligned_cols=23 Identities=17% Similarity=-0.003 Sum_probs=15.4
Q ss_pred cCCCHHHHHHHHHHHHhCCCccC
Q 044812 473 SSRRWDAVAELRTMMKDRGLKKS 495 (547)
Q Consensus 473 ~~g~~~~A~~~~~~m~~~~~~~~ 495 (547)
..|+.+.|+..+-.|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 45677777777777766665554
Done!