Query 044813
Match_columns 352
No_of_seqs 254 out of 2140
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 2.9E-18 6.4E-23 157.3 3.3 76 270-348 204-280 (348)
2 PF13947 GUB_WAK_bind: Wall-as 99.7 8.6E-17 1.9E-21 126.4 8.4 93 2-106 3-105 (106)
3 PF13639 zf-RING_2: Ring finge 99.6 5E-16 1.1E-20 101.7 2.6 44 298-342 1-44 (44)
4 PF14380 WAK_assoc: Wall-assoc 99.5 3E-14 6.5E-19 109.1 5.5 59 150-213 21-92 (94)
5 PHA02929 N1R/p28-like protein; 99.4 1.4E-13 3E-18 121.5 4.3 77 271-347 148-228 (238)
6 PF12678 zf-rbx1: RING-H2 zinc 99.4 7.1E-13 1.5E-17 96.3 4.2 45 297-342 19-73 (73)
7 COG5540 RING-finger-containing 99.2 7.3E-12 1.6E-16 111.0 3.4 51 296-347 322-373 (374)
8 COG5243 HRD1 HRD ubiquitin lig 99.1 1.7E-11 3.7E-16 111.4 3.1 52 294-346 284-345 (491)
9 PF12861 zf-Apc11: Anaphase-pr 99.1 6.5E-11 1.4E-15 86.5 3.2 53 296-349 20-85 (85)
10 PF13923 zf-C3HC4_2: Zinc fing 99.0 1.9E-10 4.2E-15 72.9 3.4 39 300-341 1-39 (39)
11 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.6E-10 5.7E-15 76.6 3.9 46 297-346 2-48 (50)
12 KOG0317 Predicted E3 ubiquitin 99.0 1.7E-10 3.7E-15 102.3 3.1 53 295-351 237-289 (293)
13 cd00162 RING RING-finger (Real 99.0 2.5E-10 5.4E-15 74.5 3.1 44 299-345 1-45 (45)
14 PLN03208 E3 ubiquitin-protein 98.9 7.9E-10 1.7E-14 93.7 3.3 50 295-348 16-81 (193)
15 KOG0320 Predicted E3 ubiquitin 98.9 1.1E-09 2.3E-14 90.4 3.8 55 293-349 127-181 (187)
16 COG5194 APC11 Component of SCF 98.9 1E-09 2.2E-14 77.8 2.1 53 298-350 21-85 (88)
17 PHA02926 zinc finger-like prot 98.9 5.6E-10 1.2E-14 95.5 0.7 55 294-348 167-232 (242)
18 KOG0823 Predicted E3 ubiquitin 98.8 2.9E-09 6.3E-14 91.9 3.4 52 294-349 44-98 (230)
19 PF14634 zf-RING_5: zinc-RING 98.8 3.5E-09 7.6E-14 69.0 2.4 44 299-343 1-44 (44)
20 PF00097 zf-C3HC4: Zinc finger 98.8 4.5E-09 9.8E-14 67.4 2.5 39 300-341 1-41 (41)
21 KOG0802 E3 ubiquitin ligase [P 98.7 4.9E-09 1.1E-13 105.2 1.9 50 295-345 289-340 (543)
22 smart00184 RING Ring finger. E 98.7 1E-08 2.2E-13 64.4 2.7 38 300-341 1-39 (39)
23 PF15227 zf-C3HC4_4: zinc fing 98.7 1.5E-08 3.2E-13 65.1 2.6 38 300-341 1-42 (42)
24 KOG1493 Anaphase-promoting com 98.7 3.2E-09 6.9E-14 74.7 -0.7 53 297-349 20-84 (84)
25 smart00504 Ubox Modified RING 98.6 3.8E-08 8.2E-13 69.4 3.9 48 298-349 2-49 (63)
26 KOG2930 SCF ubiquitin ligase, 98.5 2.7E-08 5.8E-13 74.3 1.4 53 297-349 46-111 (114)
27 KOG1734 Predicted RING-contain 98.4 5.4E-08 1.2E-12 85.3 1.2 54 294-348 221-283 (328)
28 smart00744 RINGv The RING-vari 98.4 2.2E-07 4.9E-12 61.7 2.4 42 299-342 1-49 (49)
29 PF11793 FANCL_C: FANCL C-term 98.3 1.3E-07 2.9E-12 67.9 0.8 52 297-348 2-68 (70)
30 TIGR00599 rad18 DNA repair pro 98.3 4.7E-07 1E-11 86.0 3.1 49 295-347 24-72 (397)
31 COG5574 PEX10 RING-finger-cont 98.2 4.6E-07 9.9E-12 79.8 2.0 51 295-349 213-265 (271)
32 KOG0828 Predicted E3 ubiquitin 98.2 4.8E-07 1E-11 85.6 1.2 52 295-347 569-635 (636)
33 PF13445 zf-RING_UBOX: RING-ty 98.2 1.4E-06 3E-11 56.0 2.9 34 300-335 1-35 (43)
34 COG5219 Uncharacterized conser 98.0 1.4E-06 3.1E-11 88.2 0.1 54 294-347 1466-1524(1525)
35 PF04564 U-box: U-box domain; 97.9 6E-06 1.3E-10 60.0 2.7 50 296-349 3-53 (73)
36 KOG0804 Cytoplasmic Zn-finger 97.9 3.4E-06 7.4E-11 79.3 1.6 49 295-346 173-222 (493)
37 KOG2164 Predicted E3 ubiquitin 97.9 6E-06 1.3E-10 79.2 2.9 49 297-349 186-239 (513)
38 KOG4265 Predicted E3 ubiquitin 97.6 2.8E-05 6.1E-10 71.7 2.7 49 295-347 288-337 (349)
39 KOG0287 Postreplication repair 97.6 1.6E-05 3.5E-10 72.2 1.1 49 296-348 22-70 (442)
40 KOG2177 Predicted E3 ubiquitin 97.5 3.4E-05 7.4E-10 71.6 1.3 45 294-342 10-54 (386)
41 COG5432 RAD18 RING-finger-cont 97.5 4.8E-05 1E-09 67.8 1.8 47 296-346 24-70 (391)
42 KOG1039 Predicted E3 ubiquitin 97.4 8.1E-05 1.7E-09 69.6 2.2 56 295-350 159-225 (344)
43 KOG0311 Predicted E3 ubiquitin 97.4 2E-05 4.4E-10 72.1 -1.9 53 295-350 41-94 (381)
44 KOG4172 Predicted E3 ubiquitin 97.3 4.7E-05 1E-09 50.2 -0.1 46 297-346 7-54 (62)
45 KOG0825 PHD Zn-finger protein 97.3 5E-05 1.1E-09 75.9 -0.5 52 295-347 121-172 (1134)
46 KOG4445 Uncharacterized conser 97.3 9.8E-05 2.1E-09 66.2 1.1 53 295-348 113-188 (368)
47 KOG3970 Predicted E3 ubiquitin 97.2 0.00021 4.5E-09 61.5 2.6 51 295-347 48-106 (299)
48 PF14835 zf-RING_6: zf-RING of 97.2 9.3E-05 2E-09 51.1 0.2 48 297-349 7-54 (65)
49 KOG0801 Predicted E3 ubiquitin 97.2 0.00012 2.7E-09 59.6 0.9 33 293-326 173-205 (205)
50 KOG1785 Tyrosine kinase negati 97.2 0.00012 2.6E-09 68.1 0.7 54 295-352 367-422 (563)
51 PF05883 Baculo_RING: Baculovi 96.9 0.00032 6.9E-09 56.1 1.1 38 296-334 25-68 (134)
52 KOG1428 Inhibitor of type V ad 96.7 0.00088 1.9E-08 71.1 2.7 53 294-347 3483-3545(3738)
53 KOG1941 Acetylcholine receptor 96.7 0.00046 9.9E-09 64.1 0.5 47 296-343 364-413 (518)
54 PF12906 RINGv: RING-variant d 96.6 0.0014 3.1E-08 43.0 2.3 40 300-341 1-47 (47)
55 KOG0978 E3 ubiquitin ligase in 96.6 0.00059 1.3E-08 68.9 0.3 49 296-348 642-691 (698)
56 PF11789 zf-Nse: Zinc-finger o 96.5 0.0018 3.9E-08 44.3 2.4 43 295-340 9-53 (57)
57 PHA02862 5L protein; Provision 96.2 0.0027 5.8E-08 51.1 2.1 46 297-347 2-54 (156)
58 KOG0297 TNF receptor-associate 96.1 0.0027 5.9E-08 61.2 2.0 52 295-349 19-70 (391)
59 KOG4159 Predicted E3 ubiquitin 96.1 0.0037 8.1E-08 59.8 2.6 49 295-347 82-130 (398)
60 PHA02825 LAP/PHD finger-like p 96.1 0.0047 1E-07 50.8 2.8 50 294-347 5-60 (162)
61 KOG1952 Transcription factor N 96.1 0.0022 4.7E-08 65.3 1.0 50 294-343 188-244 (950)
62 PF14570 zf-RING_4: RING/Ubox 95.9 0.0065 1.4E-07 39.7 2.2 45 300-345 1-47 (48)
63 KOG1571 Predicted E3 ubiquitin 95.8 0.0059 1.3E-07 56.6 2.5 48 294-348 302-349 (355)
64 KOG3039 Uncharacterized conser 95.7 0.0085 1.8E-07 52.5 3.0 56 296-351 220-275 (303)
65 PF14447 Prok-RING_4: Prokaryo 95.5 0.0078 1.7E-07 40.3 1.6 49 297-351 7-55 (55)
66 PF08746 zf-RING-like: RING-li 94.9 0.019 4.2E-07 36.8 2.0 41 300-341 1-43 (43)
67 KOG0826 Predicted E3 ubiquitin 94.8 0.0077 1.7E-07 55.1 0.0 60 283-345 286-345 (357)
68 KOG2660 Locus-specific chromos 94.8 0.0065 1.4E-07 55.7 -0.6 53 295-350 13-65 (331)
69 KOG1814 Predicted E3 ubiquitin 94.7 0.016 3.4E-07 54.7 1.7 37 297-334 184-220 (445)
70 PF10367 Vps39_2: Vacuolar sor 94.7 0.019 4.2E-07 44.6 2.0 33 295-329 76-108 (109)
71 PHA03096 p28-like protein; Pro 94.6 0.015 3.2E-07 53.4 1.3 46 298-343 179-231 (284)
72 KOG0827 Predicted E3 ubiquitin 94.5 0.003 6.4E-08 58.9 -3.6 52 295-347 194-246 (465)
73 KOG3268 Predicted E3 ubiquitin 94.1 0.027 5.8E-07 47.0 1.7 52 297-349 165-231 (234)
74 KOG1645 RING-finger-containing 94.1 0.035 7.6E-07 52.3 2.5 35 310-344 18-54 (463)
75 COG5152 Uncharacterized conser 93.9 0.019 4E-07 48.8 0.4 46 296-345 195-240 (259)
76 KOG1002 Nucleotide excision re 93.5 0.026 5.7E-07 54.7 0.7 50 294-347 533-587 (791)
77 KOG4275 Predicted E3 ubiquitin 93.2 0.022 4.7E-07 51.3 -0.4 42 297-346 300-342 (350)
78 KOG2879 Predicted E3 ubiquitin 92.8 0.12 2.5E-06 46.4 3.5 50 294-346 236-287 (298)
79 KOG4692 Predicted E3 ubiquitin 92.2 0.11 2.3E-06 48.2 2.6 49 294-346 419-467 (489)
80 COG5236 Uncharacterized conser 92.1 0.21 4.5E-06 46.2 4.3 49 294-346 58-108 (493)
81 PF04641 Rtf2: Rtf2 RING-finge 91.8 0.19 4.2E-06 45.8 3.9 55 294-349 110-164 (260)
82 PF14446 Prok-RING_1: Prokaryo 91.7 0.22 4.8E-06 33.4 3.0 45 296-344 4-50 (54)
83 KOG1940 Zn-finger protein [Gen 91.4 0.1 2.2E-06 47.5 1.5 44 299-343 160-204 (276)
84 PF04478 Mid2: Mid2 like cell 90.7 0.38 8.3E-06 39.5 4.2 37 214-250 44-80 (154)
85 KOG1813 Predicted E3 ubiquitin 90.7 0.11 2.3E-06 47.1 1.1 46 297-346 241-286 (313)
86 KOG0309 Conserved WD40 repeat- 88.7 0.24 5.2E-06 50.4 1.8 22 319-340 1048-1069(1081)
87 PF10272 Tmpp129: Putative tra 87.9 0.38 8.3E-06 45.5 2.6 30 319-348 311-353 (358)
88 COG5222 Uncharacterized conser 87.8 0.3 6.5E-06 44.2 1.7 46 298-346 275-322 (427)
89 KOG1001 Helicase-like transcri 87.3 0.16 3.5E-06 52.3 -0.3 46 298-348 455-502 (674)
90 COG5183 SSM4 Protein involved 87.0 0.44 9.5E-06 48.9 2.5 54 294-349 9-69 (1175)
91 KOG2114 Vacuolar assembly/sort 86.4 0.31 6.6E-06 50.3 1.1 43 297-345 840-882 (933)
92 KOG0298 DEAD box-containing he 86.0 0.22 4.7E-06 53.7 -0.2 46 295-343 1151-1196(1394)
93 KOG2932 E3 ubiquitin ligase in 85.8 0.29 6.2E-06 44.6 0.5 43 299-346 92-134 (389)
94 KOG2034 Vacuolar sorting prote 85.5 0.37 8E-06 50.1 1.2 36 295-332 815-850 (911)
95 PF03854 zf-P11: P-11 zinc fin 85.0 0.46 9.9E-06 30.8 1.0 30 319-348 18-48 (50)
96 KOG3002 Zn finger protein [Gen 84.9 0.56 1.2E-05 43.5 2.0 44 295-346 46-91 (299)
97 COG5175 MOT2 Transcriptional r 83.5 0.71 1.5E-05 42.7 2.0 52 295-347 12-65 (480)
98 KOG3053 Uncharacterized conser 82.0 0.65 1.4E-05 41.3 1.1 53 294-347 17-83 (293)
99 KOG1609 Protein involved in mR 81.5 0.86 1.9E-05 42.5 1.8 48 297-345 78-133 (323)
100 KOG3161 Predicted E3 ubiquitin 81.1 0.43 9.3E-06 47.8 -0.4 43 297-343 11-54 (861)
101 KOG3899 Uncharacterized conser 78.4 0.94 2E-05 41.0 0.9 30 319-348 325-367 (381)
102 KOG2817 Predicted E3 ubiquitin 78.2 1.8 4E-05 41.0 2.8 49 294-343 331-382 (394)
103 KOG1100 Predicted E3 ubiquitin 76.4 1.8 3.9E-05 38.0 2.1 39 300-346 161-200 (207)
104 PF07800 DUF1644: Protein of u 76.0 2.8 6.1E-05 34.7 3.0 35 296-333 1-47 (162)
105 KOG3842 Adaptor protein Pellin 74.5 2.9 6.4E-05 38.4 3.0 57 294-351 338-419 (429)
106 PF13901 DUF4206: Domain of un 74.3 2 4.4E-05 37.5 1.9 42 296-343 151-197 (202)
107 KOG0802 E3 ubiquitin ligase [P 73.7 1.6 3.4E-05 44.3 1.2 48 294-349 476-523 (543)
108 KOG1812 Predicted E3 ubiquitin 72.7 1.6 3.4E-05 42.2 0.9 39 295-334 144-183 (384)
109 KOG0269 WD40 repeat-containing 72.4 2.9 6.2E-05 43.0 2.6 41 298-340 780-820 (839)
110 KOG3005 GIY-YIG type nuclease 71.6 2.2 4.7E-05 38.4 1.5 49 297-345 182-242 (276)
111 PTZ00382 Variant-specific surf 70.7 7.4 0.00016 29.6 4.0 7 238-244 85-91 (96)
112 COG5220 TFB3 Cdk activating ki 70.7 1.4 3.1E-05 38.7 0.1 48 296-343 9-61 (314)
113 smart00132 LIM Zinc-binding do 70.2 4.4 9.5E-05 24.3 2.3 37 300-346 2-38 (39)
114 TIGR00622 ssl1 transcription f 70.1 6.6 0.00014 30.7 3.6 46 297-342 55-110 (112)
115 PF07975 C1_4: TFIIH C1-like d 69.4 3.5 7.7E-05 27.4 1.7 42 300-342 2-50 (51)
116 PF05290 Baculo_IE-1: Baculovi 67.6 3.4 7.5E-05 33.1 1.6 53 296-348 79-134 (140)
117 PF00412 LIM: LIM domain; Int 64.9 7.8 0.00017 25.8 2.9 39 300-348 1-39 (58)
118 PF00628 PHD: PHD-finger; Int 64.7 4.4 9.5E-05 26.5 1.5 44 299-343 1-50 (51)
119 smart00249 PHD PHD zinc finger 63.6 4.8 0.0001 25.2 1.5 31 299-330 1-31 (47)
120 KOG3113 Uncharacterized conser 62.3 8.1 0.00017 34.5 3.1 55 295-351 109-163 (293)
121 PF04710 Pellino: Pellino; In 60.3 2.9 6.2E-05 39.8 0.0 56 296-352 327-407 (416)
122 PF13719 zinc_ribbon_5: zinc-r 56.6 7.7 0.00017 23.8 1.5 26 299-324 4-36 (37)
123 KOG4362 Transcriptional regula 56.3 2.8 6.1E-05 42.9 -0.8 47 296-346 20-69 (684)
124 KOG0825 PHD Zn-finger protein 56.1 7.6 0.00016 40.2 2.1 50 296-345 95-153 (1134)
125 KOG1829 Uncharacterized conser 55.8 3.3 7.1E-05 41.8 -0.4 45 295-343 509-558 (580)
126 PF02891 zf-MIZ: MIZ/SP-RING z 55.7 11 0.00024 24.8 2.2 42 299-344 4-50 (50)
127 PF08693 SKG6: Transmembrane a 55.4 17 0.00037 22.8 2.8 19 224-242 15-33 (40)
128 PF01363 FYVE: FYVE zinc finge 54.2 8.1 0.00017 27.1 1.5 38 295-332 7-44 (69)
129 PF10571 UPF0547: Uncharacteri 53.6 6.7 0.00015 22.1 0.8 23 299-323 2-24 (26)
130 PF08374 Protocadherin: Protoc 52.6 6.3 0.00014 34.4 0.8 27 218-244 35-61 (221)
131 PHA03099 epidermal growth fact 50.8 11 0.00024 30.0 1.8 16 194-211 56-71 (139)
132 PF01102 Glycophorin_A: Glycop 50.3 2 4.3E-05 34.2 -2.4 8 224-231 67-74 (122)
133 KOG4718 Non-SMC (structural ma 49.8 9.3 0.0002 33.2 1.4 50 297-349 181-230 (235)
134 KOG4185 Predicted E3 ubiquitin 46.9 11 0.00023 34.9 1.5 33 312-345 21-54 (296)
135 PF04423 Rad50_zn_hook: Rad50 46.2 7.8 0.00017 25.9 0.3 13 335-347 20-32 (54)
136 PF02439 Adeno_E3_CR2: Adenovi 45.0 3.2 6.9E-05 25.6 -1.5 17 232-248 16-32 (38)
137 KOG1815 Predicted E3 ubiquitin 43.8 12 0.00026 36.9 1.4 37 295-334 68-104 (444)
138 PF12191 stn_TNFRSF12A: Tumour 42.2 14 0.0003 29.4 1.2 10 180-189 41-52 (129)
139 PF06906 DUF1272: Protein of u 41.9 38 0.00082 22.9 3.0 46 298-346 6-52 (57)
140 KOG1729 FYVE finger containing 41.7 7.2 0.00016 36.0 -0.5 38 297-335 214-251 (288)
141 PF07649 C1_3: C1-like domain; 41.4 23 0.00049 20.4 1.8 29 299-328 2-30 (30)
142 PF14991 MLANA: Protein melan- 39.3 9.5 0.00021 29.7 -0.1 28 224-251 27-54 (118)
143 smart00647 IBR In Between Ring 38.8 12 0.00025 25.5 0.3 22 310-331 37-58 (64)
144 KOG4577 Transcription factor L 38.4 7.8 0.00017 35.2 -0.8 45 297-351 92-136 (383)
145 PF07191 zinc-ribbons_6: zinc- 38.0 12 0.00026 26.6 0.2 40 298-346 2-41 (70)
146 KOG1812 Predicted E3 ubiquitin 37.9 17 0.00037 35.1 1.4 44 297-341 306-351 (384)
147 cd00350 rubredoxin_like Rubred 37.7 22 0.00048 21.0 1.4 20 318-343 6-25 (33)
148 KOG2807 RNA polymerase II tran 36.7 34 0.00074 31.9 3.0 46 296-342 329-374 (378)
149 smart00064 FYVE Protein presen 36.2 31 0.00066 24.0 2.2 38 296-333 9-46 (68)
150 PF05454 DAG1: Dystroglycan (D 35.7 12 0.00027 34.5 0.0 25 226-250 151-175 (290)
151 cd00065 FYVE FYVE domain; Zinc 34.5 29 0.00063 23.0 1.7 36 298-333 3-38 (57)
152 PRK05978 hypothetical protein; 34.2 22 0.00048 29.4 1.3 30 316-350 36-67 (148)
153 KOG2068 MOT2 transcription fac 34.0 28 0.00061 32.5 2.0 50 296-346 248-298 (327)
154 PF06365 CD34_antigen: CD34/Po 33.9 26 0.00056 30.5 1.7 23 226-248 106-128 (202)
155 PF13717 zinc_ribbon_4: zinc-r 33.8 26 0.00056 21.3 1.2 27 298-324 3-36 (36)
156 TIGR01478 STEVOR variant surfa 31.9 11 0.00023 34.4 -1.0 28 225-252 262-289 (295)
157 PF13908 Shisa: Wnt and FGF in 31.2 47 0.001 28.2 2.9 12 224-235 78-89 (179)
158 COG5109 Uncharacterized conser 31.0 38 0.00082 31.4 2.3 48 294-342 333-383 (396)
159 PF15065 NCU-G1: Lysosomal tra 29.6 18 0.0004 34.4 0.1 32 218-249 317-348 (350)
160 KOG0824 Predicted E3 ubiquitin 28.9 32 0.0007 31.7 1.5 49 294-345 102-150 (324)
161 PF12768 Rax2: Cortical protei 28.4 26 0.00056 32.3 0.8 24 222-245 232-255 (281)
162 PTZ00370 STEVOR; Provisional 27.9 13 0.00027 34.1 -1.2 29 225-253 258-286 (296)
163 PF14569 zf-UDP: Zinc-binding 27.9 93 0.002 22.6 3.4 51 296-346 8-62 (80)
164 PF10577 UPF0560: Uncharacteri 27.2 27 0.00058 36.6 0.8 19 232-250 285-303 (807)
165 PF05393 Hum_adeno_E3A: Human 27.1 20 0.00044 26.5 -0.1 26 224-249 33-59 (94)
166 PF14169 YdjO: Cold-inducible 26.8 28 0.0006 23.9 0.5 10 336-345 40-49 (59)
167 PF09723 Zn-ribbon_8: Zinc rib 26.5 17 0.00036 22.9 -0.5 25 318-343 10-34 (42)
168 PF06844 DUF1244: Protein of u 25.5 42 0.00091 23.5 1.3 12 322-333 11-22 (68)
169 PF04872 Pox_L5: Poxvirus L5 p 25.2 49 0.0011 24.1 1.6 33 37-71 23-56 (79)
170 PLN02189 cellulose synthase 24.5 82 0.0018 34.3 3.7 51 296-346 33-87 (1040)
171 PF14575 EphA2_TM: Ephrin type 24.3 13 0.00028 26.8 -1.5 6 228-233 8-13 (75)
172 PF02480 Herpes_gE: Alphaherpe 23.7 26 0.00057 34.5 0.0 10 99-108 235-244 (439)
173 PF05191 ADK_lid: Adenylate ki 23.7 44 0.00095 20.4 1.0 30 314-345 2-31 (36)
174 PF14311 DUF4379: Domain of un 23.3 53 0.0011 21.8 1.5 24 317-341 32-55 (55)
175 PF01299 Lamp: Lysosome-associ 22.8 33 0.00071 32.0 0.4 7 151-157 224-230 (306)
176 PF06697 DUF1191: Protein of u 22.1 33 0.00072 31.4 0.3 20 220-239 213-232 (278)
177 PF11023 DUF2614: Protein of u 21.9 63 0.0014 25.2 1.7 16 334-349 84-99 (114)
178 PF03107 C1_2: C1 domain; Int 21.6 73 0.0016 18.3 1.6 29 299-328 2-30 (30)
179 PF12877 DUF3827: Domain of un 21.3 62 0.0013 33.1 2.0 28 221-248 270-298 (684)
180 KOG1219 Uncharacterized conser 20.7 87 0.0019 37.4 3.1 17 193-213 3953-3969(4289)
181 PF05624 LSR: Lipolysis stimul 20.6 79 0.0017 20.4 1.7 21 220-240 2-22 (49)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.9e-18 Score=157.32 Aligned_cols=76 Identities=34% Similarity=0.774 Sum_probs=64.8
Q ss_pred ccCCChHhhhcCCceeeccCCCCCCCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC-CcccccccccccC
Q 044813 270 VASLDKPTIESYPKTIVGVSGRQPKPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN-ASCPVCRKRLRFK 348 (352)
Q Consensus 270 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~l~~~ 348 (352)
...+.+..+.++|...++........ .+|+||||+|++||.+|.|| |+|.||..|||.||.++ ..||+||+++...
T Consensus 204 ~~r~~k~~l~~~p~~~f~~~~~~~~~--~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 204 RNRLIKRLLKKLPVRTFTKGDDEDAT--DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred hhhhHHHHHhhCCcEEeccccccCCC--ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 34577889999999999887654333 69999999999999999999 99999999999999776 4599999987543
No 2
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=99.69 E-value=8.6e-17 Score=126.43 Aligned_cols=93 Identities=35% Similarity=0.662 Sum_probs=71.7
Q ss_pred CCCCCCCCCCCCceecceeecCCCCCCCCCCCC-CCceeEecCC--ceEEeCCCCCceEEEEEeecccEEEEECCC--CC
Q 044813 2 GGDGNGGGGSSVPVKFPFQIINNLESLNPRCRY-PRFELLCSRN--KTILMLPRSGLFAVRNIDYNLQTLDINDPL--NC 76 (352)
Q Consensus 2 ~~~~~~CG~~~~~I~yPF~l~~~~~~~~~~CG~-p~f~L~C~~~--~~~l~l~~~~~y~V~~I~y~~~ti~v~d~~--~C 76 (352)
+| +.+|| +++|.||||+++ .||+ |+|+|.|+++ .+.|.+ .+++|+|++|+|.+++|+|.++. .|
T Consensus 3 ~C-~~~CG--nv~IpYPFgi~~-------~C~~~~~F~L~C~~~~~~~~l~l-~~~~~~V~~I~~~~~~i~v~~~~~~~~ 71 (106)
T PF13947_consen 3 GC-PSSCG--NVSIPYPFGIGP-------GCGRDPGFELTCNNNTSPPKLLL-SSGNYEVLSISYENGTIRVSDPISSNC 71 (106)
T ss_pred CC-CCccC--CEeecCCCccCC-------CCCCCCCcEEECCCCCCCceeEe-cCCcEEEEEEecCCCEEEEEeccccce
Confidence 44 58999 679999999654 4999 9999999988 778888 68999999999999999999995 45
Q ss_pred Ccc--cc--ccccCCCCCCCcc-cccccEEEEecC
Q 044813 77 LPK--RF--LDNFSLEDSPFEQ-KIYGNFTFLNCS 106 (352)
Q Consensus 77 ~~~--~~--~~n~~l~~~pf~~-~~~~~~~~~nCs 106 (352)
... .. ..+++++. ||.. ...|.+++++|+
T Consensus 72 ~~~~~~~~~~~~~~~~~-~~~~s~~~N~~~~~GC~ 105 (106)
T PF13947_consen 72 YSSSSSNSSNSNLSLNG-PFFFSSSSNKFTVVGCN 105 (106)
T ss_pred ecCCCCcccccEEeecC-CceEccCCcEEEEECCC
Confidence 211 11 12345555 5544 455889999996
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.59 E-value=5e-16 Score=101.68 Aligned_cols=44 Identities=48% Similarity=1.256 Sum_probs=40.5
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccc
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCR 342 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr 342 (352)
++|+||++++..++.+..++ |+|+||.+||.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999998 999999999999999999999997
No 4
>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal
Probab=99.49 E-value=3e-14 Score=109.14 Aligned_cols=59 Identities=31% Similarity=0.653 Sum_probs=51.3
Q ss_pred CccCceeecceeeeccc-----------cCccccccCceEEEec--CCCCcccccCCCceeeecCCCcceEEecCCC
Q 044813 150 VPSSCEVIRADVMVPVS-----------GGYWNGLEDDIRLSWS--DPHCAPCEYRGEVCKFTNDDTSLVVGCSNSG 213 (352)
Q Consensus 150 ~~~~C~~~~~~v~~Pv~-----------~~~~~~l~~gf~l~w~--~~~C~~C~~sgg~Cg~~~~~~~~~f~C~c~~ 213 (352)
++..|+.+ ++|||. .+|.++|++||+|+|+ ..+|.+|+.|||+|||+.++ .+|.|+|++
T Consensus 21 ~~~~C~~~---v~vPV~~~~~~~~~~~~~~~~~~L~~GF~L~w~~~~~~C~~C~~SgG~Cgy~~~~--~~f~C~C~d 92 (94)
T PF14380_consen 21 LAGSCQKS---VVVPVLGSAVDSIDGSSGNYEEVLKKGFELEWNADSGDCRECEASGGRCGYDSNS--EQFTCFCSD 92 (94)
T ss_pred cCCcCCEE---EEEEECchhhhccccchhHHHHHHhcCcEEEEeCCCCcCcChhcCCCEeCCCCCC--ceEEEECCC
Confidence 56899998 788883 2478889999999998 57999999999999999987 599999965
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.41 E-value=1.4e-13 Score=121.47 Aligned_cols=77 Identities=26% Similarity=0.602 Sum_probs=59.7
Q ss_pred cCCChHhhhcCCceeeccCCCCCCCCccccccccccccCCCe----eeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 271 ASLDKPTIESYPKTIVGVSGRQPKPNDNTCPICLSRYKPKQT----LRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 271 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~----~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
++..+..++.+|.+....+.......+.+|+||++++.+++. +.+++.|+|.||.+||.+|++.+.+||+||..+.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 445777888888887665544445567899999999876541 2344459999999999999999999999999875
Q ss_pred c
Q 044813 347 F 347 (352)
Q Consensus 347 ~ 347 (352)
.
T Consensus 228 ~ 228 (238)
T PHA02929 228 S 228 (238)
T ss_pred E
Confidence 3
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.35 E-value=7.1e-13 Score=96.26 Aligned_cols=45 Identities=40% Similarity=0.999 Sum_probs=36.0
Q ss_pred ccccccccccccCC----------CeeeeeCCCCCeechhhHHHHHhcCCcccccc
Q 044813 297 DNTCPICLSRYKPK----------QTLRTIPKCNHYFHAYCIDKWLRMNASCPVCR 342 (352)
Q Consensus 297 ~~~C~ICl~~~~~~----------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr 342 (352)
++.|+||++++.+. -.+...+ |||.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999322 3445556 999999999999999999999998
No 7
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.3e-12 Score=110.96 Aligned_cols=51 Identities=41% Similarity=1.022 Sum_probs=46.6
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHh-cCCccccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR-MNASCPVCRKRLRF 347 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~l~~ 347 (352)
...+|+|||++|.++|.+++|| |.|.||..||+.|+. -+..||+||.+++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4589999999999999999999 999999999999997 56789999998864
No 8
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.7e-11 Score=111.37 Aligned_cols=52 Identities=35% Similarity=1.040 Sum_probs=44.0
Q ss_pred CCCcccccccccc-ccCCC---------eeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 294 KPNDNTCPICLSR-YKPKQ---------TLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 294 ~~~~~~C~ICl~~-~~~~~---------~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
..++..|+||+|+ +..+. .-+.|| |||+||.+|++.|++++++||+||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 4578999999999 44431 336788 9999999999999999999999999863
No 9
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.09 E-value=6.5e-11 Score=86.54 Aligned_cols=53 Identities=42% Similarity=0.930 Sum_probs=41.4
Q ss_pred CccccccccccccC--------CC--eeeeeCCCCCeechhhHHHHHhc---CCcccccccccccCC
Q 044813 296 NDNTCPICLSRYKP--------KQ--TLRTIPKCNHYFHAYCIDKWLRM---NASCPVCRKRLRFKS 349 (352)
Q Consensus 296 ~~~~C~ICl~~~~~--------~~--~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~~l~~~~ 349 (352)
+++.|.||...|+. |+ .+. +-.|+|.||..||.+|++. ++.|||||+++..++
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k~ 85 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFKE 85 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCcee-eccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeCC
Confidence 37799999999862 22 232 3359999999999999975 567999999998764
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.03 E-value=1.9e-10 Score=72.93 Aligned_cols=39 Identities=46% Similarity=1.141 Sum_probs=33.2
Q ss_pred cccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccc
Q 044813 300 CPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVC 341 (352)
Q Consensus 300 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 341 (352)
|+||++++.+ .+..++ |||.|+.+||.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999876 556777 99999999999999999999998
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.02 E-value=2.6e-10 Score=76.60 Aligned_cols=46 Identities=33% Similarity=0.973 Sum_probs=39.2
Q ss_pred ccccccccccccCCCeeeeeCCCCCe-echhhHHHHHhcCCcccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHY-FHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
+..|.||++...+ +..+| |||. |+.+|+..|++.+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5689999998554 67788 9999 999999999999999999999875
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.7e-10 Score=102.27 Aligned_cols=53 Identities=28% Similarity=0.746 Sum_probs=46.2
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCCCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSPF 351 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~~ 351 (352)
.....|.+|||..+.. ..+| |||+||+.||.+|...+..||+||..+...+++
T Consensus 237 ~a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCccee
Confidence 4568999999987654 4778 999999999999999999999999999877664
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.00 E-value=2.5e-10 Score=74.45 Aligned_cols=44 Identities=43% Similarity=1.223 Sum_probs=37.0
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-CCccccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRL 345 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l 345 (352)
+|+||++.+ .+.+...+ |+|.||.+|++.|++. +..||+||+.+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 34555666 9999999999999987 77899999864
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.90 E-value=7.9e-10 Score=93.72 Aligned_cols=50 Identities=32% Similarity=0.717 Sum_probs=40.6
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc----------------CCcccccccccccC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM----------------NASCPVCRKRLRFK 348 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----------------~~~CP~Cr~~l~~~ 348 (352)
.++.+|+||++.+++. .+++ |||+||+.||.+|+.. +..||+||..+...
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 4578999999998654 4566 9999999999999852 35799999988654
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.1e-09 Score=90.43 Aligned_cols=55 Identities=36% Similarity=0.788 Sum_probs=46.4
Q ss_pred CCCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 293 PKPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 293 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
..+.-..|+|||+.+.+...+ ..+|||+|+.+||+.-++....||+|++.|.+++
T Consensus 127 ~~~~~~~CPiCl~~~sek~~v--sTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPV--STKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred ccccccCCCceecchhhcccc--ccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 345568999999999876543 2369999999999999999999999999888775
No 16
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.86 E-value=1e-09 Score=77.81 Aligned_cols=53 Identities=30% Similarity=0.698 Sum_probs=39.9
Q ss_pred cccccccccc-----------cCCCee-eeeCCCCCeechhhHHHHHhcCCcccccccccccCCC
Q 044813 298 NTCPICLSRY-----------KPKQTL-RTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSP 350 (352)
Q Consensus 298 ~~C~ICl~~~-----------~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~ 350 (352)
+.|+||...+ ..+++. ...-.|+|.||..||..||..+..|||+|+.+...++
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~~ 85 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLADG 85 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEecc
Confidence 5677766655 333433 2333599999999999999999999999999877654
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.85 E-value=5.6e-10 Score=95.48 Aligned_cols=55 Identities=33% Similarity=0.785 Sum_probs=41.3
Q ss_pred CCCccccccccccccCCC-----eeeeeCCCCCeechhhHHHHHhcC------CcccccccccccC
Q 044813 294 KPNDNTCPICLSRYKPKQ-----TLRTIPKCNHYFHAYCIDKWLRMN------ASCPVCRKRLRFK 348 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~-----~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~Cr~~l~~~ 348 (352)
.+.+.+|+||||..-++. .--+|+.|+|.||..||..|.+.+ .+||+||..+..-
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 456789999999864431 123455699999999999999753 3599999987543
No 18
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.9e-09 Score=91.91 Aligned_cols=52 Identities=29% Similarity=0.708 Sum_probs=40.7
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc---CCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM---NASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~~l~~~~ 349 (352)
.....+|.||||.-++ .| ++. |||+||+-||.+||+. .+.||+||..+..+.
T Consensus 44 ~~~~FdCNICLd~akd--PV-vTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD--PV-VTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccCC--CE-Eee-cccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 3567899999998554 44 444 9999999999999975 345999999886543
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.78 E-value=3.5e-09 Score=68.97 Aligned_cols=44 Identities=34% Similarity=0.892 Sum_probs=38.2
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRK 343 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 343 (352)
.|.||+++|.+....++++ |||+|+.+|++.+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999996666778887 9999999999999866678999985
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.76 E-value=4.5e-09 Score=67.40 Aligned_cols=39 Identities=41% Similarity=1.128 Sum_probs=33.3
Q ss_pred cccccccccCCCeeeeeCCCCCeechhhHHHHHh--cCCccccc
Q 044813 300 CPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR--MNASCPVC 341 (352)
Q Consensus 300 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~C 341 (352)
|+||++.+.+.. ++++ |||.|+.+||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987653 5677 999999999999998 45669998
No 21
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.9e-09 Score=105.19 Aligned_cols=50 Identities=34% Similarity=0.936 Sum_probs=44.5
Q ss_pred CCccccccccccccCCCe--eeeeCCCCCeechhhHHHHHhcCCccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQT--LRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRL 345 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~--~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l 345 (352)
..+..|+||+|++..+.. .+.+| |+|+||..|+..|++++++||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhh
Confidence 357899999999988765 67888 999999999999999999999999844
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.70 E-value=1e-08 Score=64.39 Aligned_cols=38 Identities=47% Similarity=1.212 Sum_probs=32.2
Q ss_pred cccccccccCCCeeeeeCCCCCeechhhHHHHHh-cCCccccc
Q 044813 300 CPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR-MNASCPVC 341 (352)
Q Consensus 300 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~C 341 (352)
|+||++. ....+.++ |+|.||.+|++.|++ .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998 34566787 999999999999998 66779987
No 23
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.66 E-value=1.5e-08 Score=65.14 Aligned_cols=38 Identities=39% Similarity=1.049 Sum_probs=28.6
Q ss_pred cccccccccCCCeeeeeCCCCCeechhhHHHHHhcC----Cccccc
Q 044813 300 CPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN----ASCPVC 341 (352)
Q Consensus 300 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~C 341 (352)
|+||++.|.++ ..|+ |||.|+..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999876 4566 99999999999999653 359987
No 24
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.2e-09 Score=74.68 Aligned_cols=53 Identities=40% Similarity=0.833 Sum_probs=39.2
Q ss_pred ccccccccccccC--------CCee-eeeCCCCCeechhhHHHHHhc---CCcccccccccccCC
Q 044813 297 DNTCPICLSRYKP--------KQTL-RTIPKCNHYFHAYCIDKWLRM---NASCPVCRKRLRFKS 349 (352)
Q Consensus 297 ~~~C~ICl~~~~~--------~~~~-~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~~l~~~~ 349 (352)
+++|.||...|.. +|.. .++-.|.|.||..||.+|+.. +..|||||+.+..++
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~e 84 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFKE 84 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEecC
Confidence 4499999999852 2211 122249999999999999964 456999999987653
No 25
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.62 E-value=3.8e-08 Score=69.39 Aligned_cols=48 Identities=27% Similarity=0.514 Sum_probs=41.2
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
..|+||++.+.++ ..++ |||+|..+||.+|++.+.+||+|++.+..++
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 4799999998875 4567 9999999999999988899999999886543
No 26
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.7e-08 Score=74.29 Aligned_cols=53 Identities=30% Similarity=0.714 Sum_probs=40.9
Q ss_pred ccccccccccc-------------cCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 297 DNTCPICLSRY-------------KPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 297 ~~~C~ICl~~~-------------~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
-+.|+||...+ ..++-....-.|+|-||..||..||+++..||+|.+++....
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~qr 111 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQR 111 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEee
Confidence 46899988765 122333344459999999999999999999999999886543
No 27
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.4e-08 Score=85.29 Aligned_cols=54 Identities=28% Similarity=0.823 Sum_probs=44.7
Q ss_pred CCCccccccccccccCCC-------eeeeeCCCCCeechhhHHHHH--hcCCcccccccccccC
Q 044813 294 KPNDNTCPICLSRYKPKQ-------TLRTIPKCNHYFHAYCIDKWL--RMNASCPVCRKRLRFK 348 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~FH~~Ci~~Wl--~~~~~CP~Cr~~l~~~ 348 (352)
..++..|+||=..+...+ ..-.|. |+|+||..||.-|- -++++||.|+..+..+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 457889999988876543 556787 99999999999996 6789999999988665
No 28
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.37 E-value=2.2e-07 Score=61.68 Aligned_cols=42 Identities=29% Similarity=0.905 Sum_probs=32.3
Q ss_pred ccccccccccCCCeeeeeCCCC-----CeechhhHHHHHhc--CCcccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCN-----HYFHAYCIDKWLRM--NASCPVCR 342 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr 342 (352)
.|.||+++.. ++...+.| |. |.+|.+|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~~-~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999433 44445788 85 89999999999954 44799995
No 29
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.34 E-value=1.3e-07 Score=67.88 Aligned_cols=52 Identities=25% Similarity=0.667 Sum_probs=25.7
Q ss_pred ccccccccccccCCCe--eeeeC--CCCCeechhhHHHHHhc-----------CCcccccccccccC
Q 044813 297 DNTCPICLSRYKPKQT--LRTIP--KCNHYFHAYCIDKWLRM-----------NASCPVCRKRLRFK 348 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~--~~~lp--~C~H~FH~~Ci~~Wl~~-----------~~~CP~Cr~~l~~~ 348 (352)
+.+|.||++.+.+++. ..+.+ .|++.||..||.+||.. ...||.|+++|..+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 4689999998763332 23332 69999999999999952 12499999998765
No 30
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=4.7e-07 Score=86.04 Aligned_cols=49 Identities=27% Similarity=0.623 Sum_probs=42.0
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
.....|+||++.|... .+++ |+|.||..||..|+..+..||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3567999999998764 3567 99999999999999988899999998754
No 31
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.6e-07 Score=79.76 Aligned_cols=51 Identities=29% Similarity=0.719 Sum_probs=41.9
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHH-HHhcCCc-ccccccccccCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDK-WLRMNAS-CPVCRKRLRFKS 349 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~-Wl~~~~~-CP~Cr~~l~~~~ 349 (352)
..+..|+||++..... ..++ |||+|+..||.. |-+++.- ||+||+....+.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 3578999999986654 4566 999999999999 9877666 999999886654
No 32
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=4.8e-07 Score=85.61 Aligned_cols=52 Identities=33% Similarity=0.806 Sum_probs=40.3
Q ss_pred CCccccccccccccCCC--------------eeeeeCCCCCeechhhHHHHHh-cCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQ--------------TLRTIPKCNHYFHAYCIDKWLR-MNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~--------------~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~l~~ 347 (352)
.....|+||+.++.--. .-..+| |.|+||..|+.+|.. .+-.||+||.+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34589999999874211 123567 999999999999998 56689999998863
No 33
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.18 E-value=1.4e-06 Score=55.99 Aligned_cols=34 Identities=29% Similarity=0.818 Sum_probs=21.4
Q ss_pred cccccccccCC-CeeeeeCCCCCeechhhHHHHHhcC
Q 044813 300 CPICLSRYKPK-QTLRTIPKCNHYFHAYCIDKWLRMN 335 (352)
Q Consensus 300 C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~ 335 (352)
|+||+| |... ..-++|+ |||+|..+||+.+++++
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 7553 3457898 99999999999999753
No 34
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.98 E-value=1.4e-06 Score=88.16 Aligned_cols=54 Identities=28% Similarity=0.771 Sum_probs=40.9
Q ss_pred CCCccccccccccccCCC---eeeeeCCCCCeechhhHHHHHhc--CCccccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQ---TLRTIPKCNHYFHAYCIDKWLRM--NASCPVCRKRLRF 347 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~l~~ 347 (352)
-+...+||||+.-+..-| +-...+.|.|.||..|+.+|++. +.+||+||.+++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 455689999998876322 12334469999999999999975 5579999987753
No 35
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.94 E-value=6e-06 Score=59.96 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=38.5
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-CCcccccccccccCC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRLRFKS 349 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l~~~~ 349 (352)
++..|+|+.+-|.+. .++| +||.|-..+|..|+++ +.+||++++.+...+
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESD 53 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred cccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence 567999999998865 4677 9999999999999988 889999999887654
No 36
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.94 E-value=3.4e-06 Score=79.33 Aligned_cols=49 Identities=45% Similarity=0.969 Sum_probs=40.1
Q ss_pred CCccccccccccccCCC-eeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQ-TLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
-+-++|+||||.+.+.- .++... |.|.||..|+..| ...+||+||.-..
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence 45689999999998764 445566 9999999999999 5569999997554
No 37
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=6e-06 Score=79.23 Aligned_cols=49 Identities=35% Similarity=0.796 Sum_probs=38.6
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-----CCcccccccccccCC
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-----NASCPVCRKRLRFKS 349 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~Cr~~l~~~~ 349 (352)
+..|+|||++..... .+- |||+||..||-+.+.. ...||+||..+..++
T Consensus 186 ~~~CPICL~~~~~p~---~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPV---RTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCccc---ccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 779999999865542 233 9999999999988853 346999999887754
No 38
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.8e-05 Score=71.68 Aligned_cols=49 Identities=27% Similarity=0.686 Sum_probs=40.9
Q ss_pred CCccccccccccccCCCeeeeeCCCCCe-echhhHHHHHhcCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHY-FHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
+...+|.|||++-.+ ..+|| |.|. .|..|.+.-.-+++.||+||+++..
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 346799999998543 56899 9998 9999999987778899999998753
No 39
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.64 E-value=1.6e-05 Score=72.16 Aligned_cols=49 Identities=29% Similarity=0.699 Sum_probs=42.8
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
.-..|.||.|-|... .++| |+|.||.-||...|..++.||.|+..+.+.
T Consensus 22 ~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 346899999999875 5677 999999999999999999999999887654
No 40
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=3.4e-05 Score=71.62 Aligned_cols=45 Identities=38% Similarity=0.886 Sum_probs=39.8
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCR 342 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr 342 (352)
..+...|+||++.|.+. +++| |+|.|+..||..++.....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 34678999999999988 7888 999999999999988556799999
No 41
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.48 E-value=4.8e-05 Score=67.78 Aligned_cols=47 Identities=32% Similarity=0.643 Sum_probs=40.1
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
....|-||-+-+... .+++ |||.|+.-||...|..+..||+||.+..
T Consensus 24 s~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence 357899999888764 3455 9999999999999999999999998654
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=8.1e-05 Score=69.59 Aligned_cols=56 Identities=36% Similarity=0.866 Sum_probs=42.7
Q ss_pred CCccccccccccccCCC----eeeeeCCCCCeechhhHHHHH--hc-----CCcccccccccccCCC
Q 044813 295 PNDNTCPICLSRYKPKQ----TLRTIPKCNHYFHAYCIDKWL--RM-----NASCPVCRKRLRFKSP 350 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl--~~-----~~~CP~Cr~~l~~~~~ 350 (352)
..+.+|.||++-..+.. ...++|+|.|.|+..||..|- ++ ...||.||.....-.|
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 46789999999976554 123457799999999999998 33 3579999987655443
No 43
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=2e-05 Score=72.15 Aligned_cols=53 Identities=45% Similarity=0.721 Sum_probs=43.4
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-CCcccccccccccCCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRLRFKSP 350 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l~~~~~ 350 (352)
..+..|+|||+-++.- +.+++|.|.|+.+||..-++. +..||.||+.+..+..
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 4578999999988763 456679999999999999864 6789999998876654
No 44
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=4.7e-05 Score=50.23 Aligned_cols=46 Identities=22% Similarity=0.662 Sum_probs=34.2
Q ss_pred ccccccccccccCCCeeeeeCCCCCe-echhhHHHHHh-cCCcccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHY-FHAYCIDKWLR-MNASCPVCRKRLR 346 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~-~~~~CP~Cr~~l~ 346 (352)
+.+|.||+|.-.+. ++-.|||. .+.+|-.+-++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 47999999985542 23239998 78888655444 6889999999874
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.28 E-value=5e-05 Score=75.93 Aligned_cols=52 Identities=29% Similarity=0.616 Sum_probs=44.5
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
.....|++||..+.++......+ |+|.||..||+.|-+.-.+||+||..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 34578999999998877666666 99999999999999999999999987643
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.26 E-value=9.8e-05 Score=66.17 Aligned_cols=53 Identities=32% Similarity=0.914 Sum_probs=44.0
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHh-----------------------cCCcccccccccccC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR-----------------------MNASCPVCRKRLRFK 348 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----------------------~~~~CP~Cr~~l~~~ 348 (352)
.....|+|||--|.+++...+++ |.|-||..|+...|. .+..||+||..|.-.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 35679999999999999999998 999999999987763 134599999887543
No 47
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00021 Score=61.47 Aligned_cols=51 Identities=24% Similarity=0.600 Sum_probs=42.9
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc--------CCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM--------NASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~Cr~~l~~ 347 (352)
....-|..|-..+.++|.+|+. |.|+||++|+++|--. ...||-|.+++-.
T Consensus 48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 4567899999999999999876 9999999999999742 3459999987743
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.20 E-value=9.3e-05 Score=51.09 Aligned_cols=48 Identities=27% Similarity=0.622 Sum_probs=23.6
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
-..|++|.+-++++ +.+. +|.|+|+..||..-+. ..||+|+.+.-.++
T Consensus 7 lLrCs~C~~~l~~p--v~l~-~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 7 LLRCSICFDILKEP--VCLG-GCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp TTS-SSS-S--SS---B----SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred hcCCcHHHHHhcCC--ceec-cCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 35799999987765 3334 5999999999988544 35999988764443
No 49
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00012 Score=59.61 Aligned_cols=33 Identities=27% Similarity=0.647 Sum_probs=29.8
Q ss_pred CCCCccccccccccccCCCeeeeeCCCCCeechh
Q 044813 293 PKPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAY 326 (352)
Q Consensus 293 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~ 326 (352)
.+.+..+|.||||+++.++++..|| |-.+||++
T Consensus 173 L~ddkGECvICLEdL~~GdtIARLP-CLCIYHK~ 205 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEAGDTIARLP-CLCIYHKQ 205 (205)
T ss_pred hcccCCcEEEEhhhccCCCceeccc-eEEEeecC
Confidence 3567789999999999999999999 99999974
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.17 E-value=0.00012 Score=68.06 Aligned_cols=54 Identities=24% Similarity=0.743 Sum_probs=43.8
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc--CCcccccccccccCCCCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM--NASCPVCRKRLRFKSPFV 352 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~l~~~~~~~ 352 (352)
+.-..|-||-|. +..+++.| |||+.|..|+..|-.. .++||.||-++..-+++|
T Consensus 367 sTFeLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 367 STFELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred chHHHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 345799999876 34578888 9999999999999732 678999999998777654
No 51
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.94 E-value=0.00032 Score=56.10 Aligned_cols=38 Identities=24% Similarity=0.518 Sum_probs=31.4
Q ss_pred CccccccccccccCCCeeeeeCCCC------CeechhhHHHHHhc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCN------HYFHAYCIDKWLRM 334 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~------H~FH~~Ci~~Wl~~ 334 (352)
...+|+||++.+.+.+.+..++ |+ |+||.+|++.|-+.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhh
Confidence 3679999999999866677776 76 99999999999433
No 52
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.74 E-value=0.00088 Score=71.14 Aligned_cols=53 Identities=26% Similarity=0.718 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC----------Cccccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN----------ASCPVCRKRLRF 347 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----------~~CP~Cr~~l~~ 347 (352)
...++.|.||+.|-......+.|. |+|+||.+|...-|++. -+||+|++++.+
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 556789999999988778888897 99999999997766432 359999998754
No 53
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.71 E-value=0.00046 Score=64.10 Aligned_cols=47 Identities=38% Similarity=0.868 Sum_probs=39.0
Q ss_pred CccccccccccccCC-CeeeeeCCCCCeechhhHHHHHhcCC--ccccccc
Q 044813 296 NDNTCPICLSRYKPK-QTLRTIPKCNHYFHAYCIDKWLRMNA--SCPVCRK 343 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~Cr~ 343 (352)
-+.-|..|=+.+..+ +.+..|| |.|+||..|+.+.|.++. +||-||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 357899999888644 5678899 999999999999997654 5999984
No 54
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.64 E-value=0.0014 Score=42.96 Aligned_cols=40 Identities=38% Similarity=1.077 Sum_probs=26.8
Q ss_pred cccccccccCCCeeeeeCCCC-----CeechhhHHHHHh--cCCccccc
Q 044813 300 CPICLSRYKPKQTLRTIPKCN-----HYFHAYCIDKWLR--MNASCPVC 341 (352)
Q Consensus 300 C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~--~~~~CP~C 341 (352)
|-||+++-.+.+.+ +.| |. ...|.+|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67999997766533 455 53 3789999999996 45679987
No 55
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.00059 Score=68.92 Aligned_cols=49 Identities=27% Similarity=0.672 Sum_probs=38.9
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-CCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l~~~ 348 (352)
.-..|+.|-+.+++. ++++|+|+||.+||..-+.. +..||.|...+...
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 347999999776652 44469999999999999954 66799999887544
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.54 E-value=0.0018 Score=44.33 Aligned_cols=43 Identities=26% Similarity=0.633 Sum_probs=28.2
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc--CCcccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM--NASCPV 340 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~ 340 (352)
.....|+|.+..|++ .++... |+|+|-++.|.+|+++ ...||+
T Consensus 9 ~~~~~CPiT~~~~~~--PV~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFED--PVKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SS--EEEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhC--CcCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 346799999999885 466554 9999999999999944 445998
No 57
>PHA02862 5L protein; Provisional
Probab=96.25 E-value=0.0027 Score=51.14 Aligned_cols=46 Identities=20% Similarity=0.617 Sum_probs=33.8
Q ss_pred ccccccccccccCCCeeeeeCCCC-----CeechhhHHHHHhc--CCccccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCN-----HYFHAYCIDKWLRM--NASCPVCRKRLRF 347 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~l~~ 347 (352)
...|-||+++-++ .. -| |. ..-|.+|+.+|++. +..||+|+.+...
T Consensus 2 ~diCWIC~~~~~e--~~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDE--RN--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCC--Cc--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3589999998433 22 45 53 56899999999954 5569999987643
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.14 E-value=0.0027 Score=61.24 Aligned_cols=52 Identities=35% Similarity=0.707 Sum_probs=42.7
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
.++..|+||...+.+.-. .+. |||.|+..|+.+|+..+..||.|+..+...+
T Consensus 19 ~~~l~C~~C~~vl~~p~~--~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQ--TTT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCccccccccCCCC--CCC-CCCcccccccchhhccCcCCcccccccchhh
Confidence 467899999999877532 244 9999999999999999999999988775443
No 59
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0037 Score=59.81 Aligned_cols=49 Identities=31% Similarity=0.722 Sum_probs=41.7
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
..+.+|.||+.-+... ..+| |||.|+..||+.-+.+..-||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 5678999998887765 4567 99999999999988888889999988764
No 60
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.08 E-value=0.0047 Score=50.76 Aligned_cols=50 Identities=26% Similarity=0.688 Sum_probs=35.5
Q ss_pred CCCccccccccccccCCCeeeeeC-CCCC---eechhhHHHHHhc--CCccccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIP-KCNH---YFHAYCIDKWLRM--NASCPVCRKRLRF 347 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~~--~~~CP~Cr~~l~~ 347 (352)
...+..|-||.++-. +.. -| .|.. .-|.+|++.|+.. ..+|++|+.+...
T Consensus 5 s~~~~~CRIC~~~~~--~~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VVT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCCC--Ccc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 346789999998843 222 35 2444 5699999999954 4569999987643
No 61
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.07 E-value=0.0022 Score=65.32 Aligned_cols=50 Identities=34% Similarity=0.791 Sum_probs=38.8
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC-------Cccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN-------ASCPVCRK 343 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-------~~CP~Cr~ 343 (352)
.....+|.||++.+..-+.+=....|.|+||..||..|.++. =.||-|..
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 345689999999998777654444599999999999998541 14999973
No 62
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.87 E-value=0.0065 Score=39.71 Aligned_cols=45 Identities=24% Similarity=0.697 Sum_probs=22.2
Q ss_pred cccccccccCCCeeeeeC-CCCCeechhhHHHHHh-cCCccccccccc
Q 044813 300 CPICLSRYKPKQTLRTIP-KCNHYFHAYCIDKWLR-MNASCPVCRKRL 345 (352)
Q Consensus 300 C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~l 345 (352)
|++|.+++...+ ....| .|++..+..|...-++ .+..||-||++.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984433 23444 3899999999888875 578899999864
No 63
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.0059 Score=56.64 Aligned_cols=48 Identities=33% Similarity=0.753 Sum_probs=35.3
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
......|.||+++..+ ...+| |||+=+ |..-- +...+||+||+.+...
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~~~ 349 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIRLV 349 (355)
T ss_pred cCCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHHHH
Confidence 4456899999999665 56888 999944 54443 3456699999987643
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.0085 Score=52.54 Aligned_cols=56 Identities=18% Similarity=0.349 Sum_probs=49.9
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCCCC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSPF 351 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~~ 351 (352)
....|+||.+.+...-.+..|..|||+|..+|++..++.-..||+|-+++..++.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 56799999999999888888877999999999999999999999999988877654
No 65
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.52 E-value=0.0078 Score=40.29 Aligned_cols=49 Identities=24% Similarity=0.643 Sum_probs=36.4
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCCCC
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSPF 351 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~~ 351 (352)
...|..|... +..-.++| |+|+....|.+.+ +-+-||.|-+++...+|+
T Consensus 7 ~~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~~~ 55 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDDPF 55 (55)
T ss_pred ceeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCCCCC
Confidence 4456666544 33346788 9999999998886 556799999999887764
No 66
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.89 E-value=0.019 Score=36.80 Aligned_cols=41 Identities=29% Similarity=0.694 Sum_probs=24.2
Q ss_pred cccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC--ccccc
Q 044813 300 CPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA--SCPVC 341 (352)
Q Consensus 300 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~C 341 (352)
|.+|-+-...|....... |+=.+|..|++.+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678887777775544333 989999999999997655 79987
No 67
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.0077 Score=55.06 Aligned_cols=60 Identities=18% Similarity=0.398 Sum_probs=43.9
Q ss_pred ceeeccCCCCCCCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccc
Q 044813 283 KTIVGVSGRQPKPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRL 345 (352)
Q Consensus 283 ~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l 345 (352)
..++.++.+....+...|+||+..-+.+. +-.+ =|-+||..||-..+++++.||+=-.+.
T Consensus 286 h~~~~se~e~l~~~~~~CpvClk~r~Npt-vl~v--SGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 286 HKQYNSESELLPPDREVCPVCLKKRQNPT-VLEV--SGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred hhhcccccccCCCccccChhHHhccCCCc-eEEe--cceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 34444455555667899999999866643 2222 599999999999999999999854443
No 68
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.77 E-value=0.0065 Score=55.67 Aligned_cols=53 Identities=28% Similarity=0.574 Sum_probs=43.4
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSP 350 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~ 350 (352)
....+|.+|-.-|-+...+. .|-|.||+.||...|....+||+|...+-.-.|
T Consensus 13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCccc
Confidence 45689999988887765433 599999999999999999999999887755444
No 69
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.016 Score=54.72 Aligned_cols=37 Identities=22% Similarity=0.669 Sum_probs=32.3
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM 334 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~ 334 (352)
-..|.||+++..-.+....+| |+|+|++.|+...+..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTI 220 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHH
Confidence 468999999976667888999 9999999999999853
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.69 E-value=0.019 Score=44.58 Aligned_cols=33 Identities=24% Similarity=0.657 Sum_probs=27.3
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHH
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCID 329 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~ 329 (352)
.++..|++|-..+.. ....+-| |||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 456789999999887 4566778 99999999975
No 71
>PHA03096 p28-like protein; Provisional
Probab=94.64 E-value=0.015 Score=53.41 Aligned_cols=46 Identities=28% Similarity=0.653 Sum_probs=33.4
Q ss_pred cccccccccccCCC----eeeeeCCCCCeechhhHHHHHhc---CCccccccc
Q 044813 298 NTCPICLSRYKPKQ----TLRTIPKCNHYFHAYCIDKWLRM---NASCPVCRK 343 (352)
Q Consensus 298 ~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~ 343 (352)
.+|.||++...+.. .--.|+.|.|.|+..||..|... +.+||.||+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 58999999976543 22357789999999999999843 233555543
No 72
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.003 Score=58.87 Aligned_cols=52 Identities=27% Similarity=0.588 Sum_probs=44.7
Q ss_pred CCccccccccccccCC-CeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPK-QTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
.-...|+||.+.+++. +.+..+- |||.+|.+||.+||.++..||-||+.|..
T Consensus 194 slv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 194 SLVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 3457899999999877 6677776 99999999999999888899999998753
No 73
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.027 Score=46.95 Aligned_cols=52 Identities=31% Similarity=0.722 Sum_probs=36.0
Q ss_pred ccccccccccccCCC----eeeeeCCCCCeechhhHHHHHhc----C-------CcccccccccccCC
Q 044813 297 DNTCPICLSRYKPKQ----TLRTIPKCNHYFHAYCIDKWLRM----N-------ASCPVCRKRLRFKS 349 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl~~----~-------~~CP~Cr~~l~~~~ 349 (352)
-..|.||+.--.+|. ..--.+ ||.-||.-|+..||+. . ..||.|..++.+|-
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~q-CgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQ-CGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred hhcccceeeeecCCccccccccccc-cCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 456777765433331 222344 9999999999999963 1 34999999887764
No 74
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.035 Score=52.32 Aligned_cols=35 Identities=31% Similarity=0.822 Sum_probs=25.1
Q ss_pred CCeeeeeCCCCCeechhhHHHHHhc--CCcccccccc
Q 044813 310 KQTLRTIPKCNHYFHAYCIDKWLRM--NASCPVCRKR 344 (352)
Q Consensus 310 ~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~ 344 (352)
++.....+.|||.|..+||+.||-+ +..||.|.-+
T Consensus 18 g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 18 GNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred CceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 3333333349999999999999943 3459999643
No 75
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.91 E-value=0.019 Score=48.75 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=38.9
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRL 345 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l 345 (352)
-...|.||-++|+.+ .++ .|||.|+..|...-++....|-+|-+..
T Consensus 195 IPF~C~iCKkdy~sp---vvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 195 IPFLCGICKKDYESP---VVT-ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred Cceeehhchhhccch---hhh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence 457999999999876 234 4999999999999989999999997754
No 76
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.52 E-value=0.026 Score=54.74 Aligned_cols=50 Identities=26% Similarity=0.672 Sum_probs=38.3
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-----CCccccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-----NASCPVCRKRLRF 347 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~Cr~~l~~ 347 (352)
.....+|.+|.+.-++. .... |.|.||.-||.+++.. +.+||.|-..|..
T Consensus 533 nk~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred ccCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 45568999999875443 3454 9999999999999853 5679999886643
No 77
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.022 Score=51.32 Aligned_cols=42 Identities=24% Similarity=0.680 Sum_probs=31.7
Q ss_pred ccccccccccccCCCeeeeeCCCCCe-echhhHHHHHhcCCcccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHY-FHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
+..|+||++. ......|+ |||. -+.+|-+. -+.||+||+.+.
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence 6899999987 34467888 9998 56777443 247999998763
No 78
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.12 Score=46.41 Aligned_cols=50 Identities=24% Similarity=0.575 Sum_probs=37.9
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc--CCcccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM--NASCPVCRKRLR 346 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~l~ 346 (352)
...+.+|++|-+.-..+ ....+ |+|+||--||..-+.. .-+||.|-.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 56678999998875543 33444 9999999999987643 357999987664
No 79
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=0.11 Score=48.16 Aligned_cols=49 Identities=29% Similarity=0.576 Sum_probs=40.8
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
..++..|+||... +-.....| |+|.=+..||.+-+-..+.|=.|+..+.
T Consensus 419 ~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 5788999999875 23345677 9999999999999988899999988664
No 80
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.06 E-value=0.21 Score=46.19 Aligned_cols=49 Identities=27% Similarity=0.632 Sum_probs=37.7
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHH--HhcCCcccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKW--LRMNASCPVCRKRLR 346 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W--l~~~~~CP~Cr~~l~ 346 (352)
.++...|.||-+.+.- ..++| |+|..+.-|--.- |-.+..||+||.++.
T Consensus 58 DEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 58 DEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 4566799999887543 46788 9999999997543 456788999998764
No 81
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.82 E-value=0.19 Score=45.75 Aligned_cols=55 Identities=18% Similarity=0.469 Sum_probs=42.5
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
......|+|...+|........+-.|||+|-.++|++- +....||+|-.++...+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEED 164 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCC
Confidence 45678999999999655555444349999999999997 33567999999887554
No 82
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.69 E-value=0.22 Score=33.39 Aligned_cols=45 Identities=24% Similarity=0.708 Sum_probs=35.9
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccc--cccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPV--CRKR 344 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~--Cr~~ 344 (352)
....|.+|-+.|.+++.+.+.|.|+-.+|.+|-+. ...|-. |...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 45689999999998898999999999999999543 455655 5443
No 83
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.35 E-value=0.1 Score=47.46 Aligned_cols=44 Identities=30% Similarity=0.805 Sum_probs=37.1
Q ss_pred ccccccccccCCC-eeeeeCCCCCeechhhHHHHHhcCCccccccc
Q 044813 299 TCPICLSRYKPKQ-TLRTIPKCNHYFHAYCIDKWLRMNASCPVCRK 343 (352)
Q Consensus 299 ~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 343 (352)
-|+||.+.+-... .+..++ |||.-|..|+.+....+-+||+|.+
T Consensus 160 ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 3999999976655 345666 9999999999999888889999987
No 84
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=90.74 E-value=0.38 Score=39.50 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=23.2
Q ss_pred CCCCccceEEeeehhhhhHHHHHhhheeeeEeecccC
Q 044813 214 KESVKYDAIIIGIGFGTPGALFIIALGCYLCSKVWTH 250 (352)
Q Consensus 214 ~~~~~~~i~~i~i~~~~~~~i~~~~l~~~~~~~~r~~ 250 (352)
+...+..++.+++++|+.+++.++++++++|.|.++.
T Consensus 44 S~knknIVIGvVVGVGg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 44 SSKNKNIVIGVVVGVGGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred CcCCccEEEEEEecccHHHHHHHHHhheeEEEecccC
Confidence 3444556666667777777777677776666655543
No 85
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=0.11 Score=47.13 Aligned_cols=46 Identities=28% Similarity=0.572 Sum_probs=38.4
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
...|-||...|..+ .++ +|+|-|+..|-..=+++...|++|-++..
T Consensus 241 Pf~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccc---hhh-cCCceeehhhhccccccCCcceecccccc
Confidence 46799999999876 233 49999999999988888899999987653
No 86
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.67 E-value=0.24 Score=50.36 Aligned_cols=22 Identities=36% Similarity=0.999 Sum_probs=20.7
Q ss_pred CCCeechhhHHHHHhcCCcccc
Q 044813 319 CNHYFHAYCIDKWLRMNASCPV 340 (352)
Q Consensus 319 C~H~FH~~Ci~~Wl~~~~~CP~ 340 (352)
|+|+-|..|..+|++.+-.||-
T Consensus 1048 C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1048 CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccHHHHHHHHhcCCcCCC
Confidence 9999999999999999989984
No 87
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.91 E-value=0.38 Score=45.53 Aligned_cols=30 Identities=27% Similarity=0.871 Sum_probs=21.8
Q ss_pred CCCeechhhHHHHHhc-------------CCcccccccccccC
Q 044813 319 CNHYFHAYCIDKWLRM-------------NASCPVCRKRLRFK 348 (352)
Q Consensus 319 C~H~FH~~Ci~~Wl~~-------------~~~CP~Cr~~l~~~ 348 (352)
|.-+.|.+|+.+|+-. +..||+||+.+...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 3445679999999832 34699999987543
No 88
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.84 E-value=0.3 Score=44.24 Aligned_cols=46 Identities=30% Similarity=0.733 Sum_probs=34.4
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHH-hcCCcccccc-cccc
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL-RMNASCPVCR-KRLR 346 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~Cr-~~l~ 346 (352)
..|+.|-.-+... ++ +|.|+|.|+.+||..-| ..-..||.|. +++.
T Consensus 275 LkCplc~~Llrnp--~k-T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNP--MK-TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhhCc--cc-CccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 7899997765543 33 36699999999999776 5667899994 4443
No 89
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=87.35 E-value=0.16 Score=52.33 Aligned_cols=46 Identities=35% Similarity=0.756 Sum_probs=36.3
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHhc--CCcccccccccccC
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM--NASCPVCRKRLRFK 348 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~l~~~ 348 (352)
..|.||++ .+....++ |+|.|+.+|+.+-++. ...||+||..+..+
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 69999999 34555676 9999999999988743 33599999877554
No 90
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.01 E-value=0.44 Score=48.92 Aligned_cols=54 Identities=26% Similarity=0.764 Sum_probs=40.8
Q ss_pred CCCccccccccccccCCCeeeeeCCCC-----CeechhhHHHHHhc--CCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCN-----HYFHAYCIDKWLRM--NASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~l~~~~ 349 (352)
..++..|-||..|=..++++- -| |. .-.|.+|+.+|+.- ...|-+|+.++..++
T Consensus 9 N~d~~~CRICr~e~~~d~pLf-hP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF-HP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CccchhceeecCCCCCCCcCc-cc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 456689999999977777653 44 53 23899999999954 455999998887654
No 91
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.43 E-value=0.31 Score=50.34 Aligned_cols=43 Identities=23% Similarity=0.661 Sum_probs=31.7
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRL 345 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l 345 (352)
...|..|-..++-+ ...-. |||.||.+|+. .+...||-|+-++
T Consensus 840 ~skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccchhh
Confidence 36899997776654 33343 99999999998 4556799998643
No 92
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.00 E-value=0.22 Score=53.69 Aligned_cols=46 Identities=26% Similarity=0.725 Sum_probs=38.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRK 343 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 343 (352)
.....|.||++.+.....+. .|||.++..|+..|+..+..||+|+.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhh
Confidence 34479999999988543332 39999999999999999999999974
No 93
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=85.77 E-value=0.29 Score=44.65 Aligned_cols=43 Identities=30% Similarity=0.643 Sum_probs=29.5
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
-|.-|--. ..-.-|++| |+|+||.+|-.. ..-+.||.|-..+.
T Consensus 92 fCd~Cd~P--I~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFP--IAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCc--ceeeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 46666333 334558898 999999999654 23558999976553
No 94
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.49 E-value=0.37 Score=50.07 Aligned_cols=36 Identities=25% Similarity=0.615 Sum_probs=28.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHH
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL 332 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 332 (352)
..+.+|.+|--.+... .-.+-| |||.||++||..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 4568999998887664 445667 99999999997654
No 95
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=84.98 E-value=0.46 Score=30.75 Aligned_cols=30 Identities=37% Similarity=0.871 Sum_probs=21.8
Q ss_pred C-CCeechhhHHHHHhcCCcccccccccccC
Q 044813 319 C-NHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 319 C-~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
| .|-.+..|+...+.....||+|..+++.+
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 7 59999999999999999999999998764
No 96
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=84.94 E-value=0.56 Score=43.46 Aligned_cols=44 Identities=25% Similarity=0.739 Sum_probs=34.7
Q ss_pred CCccccccccccccCCCeeeeeCCC--CCeechhhHHHHHhcCCcccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKC--NHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C--~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
.+-.+|+||.+.+... +.+ | ||+-+..|=. +....||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc----cee-cCCCcEehhhhhh---hhcccCCccccccc
Confidence 4568999999998876 333 6 7999999965 35678999999876
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=83.54 E-value=0.71 Score=42.66 Aligned_cols=52 Identities=21% Similarity=0.703 Sum_probs=34.9
Q ss_pred CCccccccccccccCCCe-eeeeCCCCCeechhhHHHHHh-cCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQT-LRTIPKCNHYFHAYCIDKWLR-MNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~l~~ 347 (352)
.+++.|+.|+|++...|. ..-.| ||-..+.-|-..--+ -+..||-||+....
T Consensus 12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 356679999999876553 33455 887766666433321 36789999986644
No 98
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.00 E-value=0.65 Score=41.30 Aligned_cols=53 Identities=23% Similarity=0.707 Sum_probs=35.5
Q ss_pred CCCccccccccccccCCCee-eeeCCC-----CCeechhhHHHHHhcC--------Cccccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTL-RTIPKC-----NHYFHAYCIDKWLRMN--------ASCPVCRKRLRF 347 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~-~~lp~C-----~H~FH~~Ci~~Wl~~~--------~~CP~Cr~~l~~ 347 (352)
.+.+..|-||+.-=++.... =+-| | .|=.|..|+..|+.++ -+||.|+.+..-
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 45678999999874443211 1234 5 3779999999999432 249999876543
No 99
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.46 E-value=0.86 Score=42.52 Aligned_cols=48 Identities=29% Similarity=0.801 Sum_probs=35.5
Q ss_pred ccccccccccccCCCe-eeeeCCCC-----CeechhhHHHHHh--cCCccccccccc
Q 044813 297 DNTCPICLSRYKPKQT-LRTIPKCN-----HYFHAYCIDKWLR--MNASCPVCRKRL 345 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~-~~~lp~C~-----H~FH~~Ci~~Wl~--~~~~CP~Cr~~l 345 (352)
+..|-||.++..+... ....| |. +..|..|++.|+. .+..|.+|....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 5789999998765432 33455 63 5679999999996 456699998754
No 100
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.12 E-value=0.43 Score=47.76 Aligned_cols=43 Identities=28% Similarity=0.639 Sum_probs=32.0
Q ss_pred ccccccccccccCCCee-eeeCCCCCeechhhHHHHHhcCCccccccc
Q 044813 297 DNTCPICLSRYKPKQTL-RTIPKCNHYFHAYCIDKWLRMNASCPVCRK 343 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 343 (352)
-..|.||+..|....-. +.+. |||..+..|+..-. +.+|| |++
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~-cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQ-CGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCccccc-ccchHHHHHHHhHh--hccCC-CCc
Confidence 45799999998765432 3454 99999999998864 56888 654
No 101
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.41 E-value=0.94 Score=41.03 Aligned_cols=30 Identities=27% Similarity=0.734 Sum_probs=23.0
Q ss_pred CCCeechhhHHHHHh-------------cCCcccccccccccC
Q 044813 319 CNHYFHAYCIDKWLR-------------MNASCPVCRKRLRFK 348 (352)
Q Consensus 319 C~H~FH~~Ci~~Wl~-------------~~~~CP~Cr~~l~~~ 348 (352)
|.-+.+.+|+.+|+- .+.+||+||+.+...
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 566788999999983 356799999987543
No 102
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.22 E-value=1.8 Score=41.04 Aligned_cols=49 Identities=14% Similarity=0.369 Sum_probs=40.8
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC---ccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA---SCPVCRK 343 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~Cr~ 343 (352)
...-..|+|=-++-.+...-..|. |||+..++=|..-.+... .||.|-.
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ccceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 455689999999888888888887 999999999999886544 4999954
No 103
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.40 E-value=1.8 Score=37.95 Aligned_cols=39 Identities=31% Similarity=0.781 Sum_probs=28.7
Q ss_pred cccccccccCCCeeeeeCCCCCe-echhhHHHHHhcCCcccccccccc
Q 044813 300 CPICLSRYKPKQTLRTIPKCNHY-FHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 300 C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
|-.|-+. ...+.++| |.|+ ++..|=.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8888665 45678899 9887 88888443 356999987554
No 104
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=76.01 E-value=2.8 Score=34.70 Aligned_cols=35 Identities=29% Similarity=0.712 Sum_probs=22.8
Q ss_pred CccccccccccccCCCeeeeeC-----------CCCCe-echhhHHHHHh
Q 044813 296 NDNTCPICLSRYKPKQTLRTIP-----------KCNHY-FHAYCIDKWLR 333 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp-----------~C~H~-FH~~Ci~~Wl~ 333 (352)
++..|+||||--... .+|. -|+-. =|..|+++.-+
T Consensus 1 ed~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 356899999985543 2332 14333 48999999864
No 105
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=74.53 E-value=2.9 Score=38.39 Aligned_cols=57 Identities=23% Similarity=0.553 Sum_probs=40.6
Q ss_pred CCCcccccccccccc-----CC-----------CeeeeeCCCCCeechhhHHHHHhc---------CCcccccccccccC
Q 044813 294 KPNDNTCPICLSRYK-----PK-----------QTLRTIPKCNHYFHAYCIDKWLRM---------NASCPVCRKRLRFK 348 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~-----~~-----------~~~~~lp~C~H~FH~~Ci~~Wl~~---------~~~CP~Cr~~l~~~ 348 (352)
...+.+|++|+..=. .| -.....| |||+--.+-+.-|.+. +..||.|-..|..+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 455789999997621 01 0123467 9999999999999864 45699999888776
Q ss_pred CCC
Q 044813 349 SPF 351 (352)
Q Consensus 349 ~~~ 351 (352)
.+.
T Consensus 417 ~~~ 419 (429)
T KOG3842|consen 417 QGY 419 (429)
T ss_pred Cce
Confidence 654
No 106
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=74.27 E-value=2 Score=37.52 Aligned_cols=42 Identities=36% Similarity=0.823 Sum_probs=30.8
Q ss_pred Ccccccccccc-----ccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccc
Q 044813 296 NDNTCPICLSR-----YKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRK 343 (352)
Q Consensus 296 ~~~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 343 (352)
....|.||-++ |+. +.+...++|+-+||.+|.. +..||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 45799999764 233 3556667799999999976 267999944
No 107
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.69 E-value=1.6 Score=44.32 Aligned_cols=48 Identities=31% Similarity=0.933 Sum_probs=39.7
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
.+....|+||+++. ..+..+ |. |.-|+..|+..+.+||+|+..+...+
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 34568999999998 456676 88 99999999999999999988776544
No 108
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.73 E-value=1.6 Score=42.19 Aligned_cols=39 Identities=21% Similarity=0.581 Sum_probs=28.9
Q ss_pred CCccccccccccccCC-CeeeeeCCCCCeechhhHHHHHhc
Q 044813 295 PNDNTCPICLSRYKPK-QTLRTIPKCNHYFHAYCIDKWLRM 334 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~ 334 (352)
....+|.||..+.... +..... +|+|.|+.+|+.+-++.
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 3567999999555444 444434 59999999999988864
No 109
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.40 E-value=2.9 Score=42.98 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=29.8
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccc
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPV 340 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~ 340 (352)
..|.+|-..+.. .....+.|+|.=|.+|+.+|+..+.-||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 478888554332 22334569999999999999988777765
No 110
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=71.62 E-value=2.2 Score=38.41 Aligned_cols=49 Identities=27% Similarity=0.612 Sum_probs=36.9
Q ss_pred ccccccccccccCCCeeeee---CCCCCeechhhHHHHHh---------cCCccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTI---PKCNHYFHAYCIDKWLR---------MNASCPVCRKRL 345 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~l---p~C~H~FH~~Ci~~Wl~---------~~~~CP~Cr~~l 345 (352)
..+|.+|..++.+.+..+.. |.|+-++|..|+..-+. ....||.|++.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 36999999999666655543 35899999999999442 245799998854
No 111
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=70.75 E-value=7.4 Score=29.63 Aligned_cols=7 Identities=14% Similarity=0.230 Sum_probs=2.7
Q ss_pred hheeeeE
Q 044813 238 ALGCYLC 244 (352)
Q Consensus 238 ~l~~~~~ 244 (352)
++.|++.
T Consensus 85 ~l~w~f~ 91 (96)
T PTZ00382 85 FLCWWFV 91 (96)
T ss_pred HHhheeE
Confidence 3334433
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=70.69 E-value=1.4 Score=38.74 Aligned_cols=48 Identities=33% Similarity=0.766 Sum_probs=36.3
Q ss_pred Ccccccccccc-ccCCCee-eeeCCCCCeechhhHHHHHhcC-Cccc--cccc
Q 044813 296 NDNTCPICLSR-YKPKQTL-RTIPKCNHYFHAYCIDKWLRMN-ASCP--VCRK 343 (352)
Q Consensus 296 ~~~~C~ICl~~-~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~~-~~CP--~Cr~ 343 (352)
.+..|+||-.+ |..++.. -+-|.|-|..|..|++.-+... ..|| -|.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 45689999988 5555533 3446799999999999999664 4599 7754
No 113
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=70.21 E-value=4.4 Score=24.35 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=25.2
Q ss_pred cccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 300 CPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 300 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
|+.|-+.+...+..... =+..||.+| -.|..|++.|.
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcCc
Confidence 77888877765333322 478899988 57888877653
No 114
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.09 E-value=6.6 Score=30.72 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=34.4
Q ss_pred ccccccccccccCCC----------eeeeeCCCCCeechhhHHHHHhcCCcccccc
Q 044813 297 DNTCPICLSRYKPKQ----------TLRTIPKCNHYFHAYCIDKWLRMNASCPVCR 342 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~----------~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr 342 (352)
...|--|+..|.+.. ..-..++|++.|+.+|=..+-+.=..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 356999999886431 1234567999999999777777767799995
No 115
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=69.40 E-value=3.5 Score=27.37 Aligned_cols=42 Identities=26% Similarity=0.641 Sum_probs=22.0
Q ss_pred cccccccccCCC------eeeeeCCCCCeechhhHHHHH-hcCCcccccc
Q 044813 300 CPICLSRYKPKQ------TLRTIPKCNHYFHAYCIDKWL-RMNASCPVCR 342 (352)
Q Consensus 300 C~ICl~~~~~~~------~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~Cr 342 (352)
|--|+..|..+. .....|+|++.|+.+| |..+ +.=.+||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 556777776652 3456778999999999 3333 3345699884
No 116
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=67.63 E-value=3.4 Score=33.11 Aligned_cols=53 Identities=19% Similarity=0.470 Sum_probs=35.5
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHh---cCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR---MNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~Cr~~l~~~ 348 (352)
.--+|.||.|.-.+..-+.---.||-..+--|-..-++ .++.||+|+.++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 34689999987554432221113898888887665443 478899999988654
No 117
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=64.86 E-value=7.8 Score=25.85 Aligned_cols=39 Identities=21% Similarity=0.468 Sum_probs=25.7
Q ss_pred cccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 300 CPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 300 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
|+-|-..+...+.+... -+..||.+| -+|-.|+++|...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCC
Confidence 56677777755544222 678888887 5788887777554
No 118
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=64.68 E-value=4.4 Score=26.49 Aligned_cols=44 Identities=25% Similarity=0.644 Sum_probs=29.4
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHh------cCCccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR------MNASCPVCRK 343 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~Cr~ 343 (352)
.|.||-..-.. +.+..-..|+..||..|+..=.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~-~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDD-GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTT-SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCC-CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 38899884444 34444446999999999976543 1345888864
No 119
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.30 E-value=8.1 Score=34.52 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=39.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCCCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSPF 351 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~~ 351 (352)
.....|+|=--+|.....-..+-.|||+|-..-+.+- +..+|++|.+.+...+-+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeE
Confidence 4567899876666554433333349999999888885 456799999988776543
No 121
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=60.31 E-value=2.9 Score=39.80 Aligned_cols=56 Identities=27% Similarity=0.566 Sum_probs=0.0
Q ss_pred Ccccccccccccc-----CC-----------CeeeeeCCCCCeechhhHHHHHhc---------CCcccccccccccCCC
Q 044813 296 NDNTCPICLSRYK-----PK-----------QTLRTIPKCNHYFHAYCIDKWLRM---------NASCPVCRKRLRFKSP 350 (352)
Q Consensus 296 ~~~~C~ICl~~~~-----~~-----------~~~~~lp~C~H~FH~~Ci~~Wl~~---------~~~CP~Cr~~l~~~~~ 350 (352)
...+|++|+..=. .| -+....| |||+--.+...-|-+. +..||.|-.+|....+
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g 405 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG 405 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence 3789999996521 11 1234568 9999999999999753 3569999998887666
Q ss_pred CC
Q 044813 351 FV 352 (352)
Q Consensus 351 ~~ 352 (352)
+|
T Consensus 406 ~v 407 (416)
T PF04710_consen 406 YV 407 (416)
T ss_dssp --
T ss_pred ce
Confidence 54
No 122
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=56.57 E-value=7.7 Score=23.78 Aligned_cols=26 Identities=38% Similarity=0.910 Sum_probs=15.6
Q ss_pred ccccccccccCCCe-------eeeeCCCCCeec
Q 044813 299 TCPICLSRYKPKQT-------LRTIPKCNHYFH 324 (352)
Q Consensus 299 ~C~ICl~~~~~~~~-------~~~lp~C~H~FH 324 (352)
+|+=|-..|..++. ....+.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57777777754442 223445888875
No 123
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=56.32 E-value=2.8 Score=42.87 Aligned_cols=47 Identities=30% Similarity=0.844 Sum_probs=36.5
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC---Ccccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN---ASCPVCRKRLR 346 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~Cr~~l~ 346 (352)
...+|.||+..+.+. ..+ +|.|.|..-|+..-+... ..||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 467999999998887 334 499999999988776443 35999987553
No 124
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=56.12 E-value=7.6 Score=40.23 Aligned_cols=50 Identities=12% Similarity=0.309 Sum_probs=34.2
Q ss_pred CccccccccccccCCC---eeeeeCCCCCeechhhHHHHHhc------CCccccccccc
Q 044813 296 NDNTCPICLSRYKPKQ---TLRTIPKCNHYFHAYCIDKWLRM------NASCPVCRKRL 345 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~l 345 (352)
+...|.||.-++..++ .+-.+..|+|.|+..||..|+.+ +..|++|..-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3467777777776632 23333359999999999999842 44588887643
No 125
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=55.78 E-value=3.3 Score=41.77 Aligned_cols=45 Identities=22% Similarity=0.710 Sum_probs=28.5
Q ss_pred CCcccccccccc-----ccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccc
Q 044813 295 PNDNTCPICLSR-----YKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRK 343 (352)
Q Consensus 295 ~~~~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 343 (352)
.....|.||-.. |+ .+.++....|+++||+.|+.. ++..||-|-+
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred cCeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 346789999322 22 223333334999999999654 4555999943
No 126
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=55.66 E-value=11 Score=24.80 Aligned_cols=42 Identities=26% Similarity=0.709 Sum_probs=18.1
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhc---CC--cccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM---NA--SCPVCRKR 344 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~--~CP~Cr~~ 344 (352)
.|+|-...+.- .+|... |.|.-+.+ ++.|++. +. .||+|.++
T Consensus 4 ~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 57777766554 566665 88873221 2345532 22 49999863
No 127
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=55.41 E-value=17 Score=22.79 Aligned_cols=19 Identities=5% Similarity=0.172 Sum_probs=7.2
Q ss_pred eeehhhhhHHHHHhhheee
Q 044813 224 IGIGFGTPGALFIIALGCY 242 (352)
Q Consensus 224 i~i~~~~~~~i~~~~l~~~ 242 (352)
.++++-+.++++++.++++
T Consensus 15 ~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 15 VGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEechHHHHHHHHHHhh
Confidence 3333333333333333333
No 128
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=54.16 E-value=8.1 Score=27.09 Aligned_cols=38 Identities=13% Similarity=0.400 Sum_probs=20.5
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHH
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL 332 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 332 (352)
.+...|.+|...|..-..-.....||++|+.+|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 35679999999996544334445699999999987654
No 129
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=53.57 E-value=6.7 Score=22.09 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=12.5
Q ss_pred ccccccccccCCCeeeeeCCCCCee
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYF 323 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~F 323 (352)
.|+-|-.++.. ..+..|.|||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 46666665433 234445577766
No 130
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=52.63 E-value=6.3 Score=34.36 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=16.0
Q ss_pred ccceEEeeehhhhhHHHHHhhheeeeE
Q 044813 218 KYDAIIIGIGFGTPGALFIIALGCYLC 244 (352)
Q Consensus 218 ~~~i~~i~i~~~~~~~i~~~~l~~~~~ 244 (352)
-+..++++++.|++++|+++++..+++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHHH
Confidence 355666777777766555555554443
No 131
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=50.83 E-value=11 Score=30.04 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=10.5
Q ss_pred CceeeecCCCcceEEecC
Q 044813 194 EVCKFTNDDTSLVVGCSN 211 (352)
Q Consensus 194 g~Cg~~~~~~~~~f~C~c 211 (352)
|.|.|-.+- .+..|.|
T Consensus 56 G~C~yI~dl--~~~~CrC 71 (139)
T PHA03099 56 GDCIHARDI--DGMYCRC 71 (139)
T ss_pred CEEEeeccC--CCceeEC
Confidence 577776655 3667777
No 132
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.35 E-value=2 Score=34.24 Aligned_cols=8 Identities=63% Similarity=0.887 Sum_probs=3.4
Q ss_pred eeehhhhh
Q 044813 224 IGIGFGTP 231 (352)
Q Consensus 224 i~i~~~~~ 231 (352)
++|++|++
T Consensus 67 ~~Ii~gv~ 74 (122)
T PF01102_consen 67 IGIIFGVM 74 (122)
T ss_dssp HHHHHHHH
T ss_pred eehhHHHH
Confidence 34444443
No 133
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=49.84 E-value=9.3 Score=33.23 Aligned_cols=50 Identities=24% Similarity=0.529 Sum_probs=38.3
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
-..|.+|..-.-.+ +|-- .|+-.+|..|+...+++...||.|.--+++.-
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg-~c~i~~h~~c~qty~q~~~~cphc~d~w~h~I 230 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCG-SCNIQYHRGCIQTYLQRRDICPHCGDLWTHPI 230 (235)
T ss_pred HHHHhHhHHHhhee--eccC-cccchhhhHHHHHHhcccCcCCchhcccCccc
Confidence 46899998876554 3333 38888999999999999999999966555543
No 134
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.88 E-value=11 Score=34.88 Aligned_cols=33 Identities=30% Similarity=0.658 Sum_probs=26.0
Q ss_pred eeeeeCCCCCeechhhHHHHHhc-CCccccccccc
Q 044813 312 TLRTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRL 345 (352)
Q Consensus 312 ~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l 345 (352)
.-|.|. |||.|+..|+..-+.. ...||.||...
T Consensus 21 ~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 21 IPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 335665 9999999999888754 44599999985
No 135
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=46.19 E-value=7.8 Score=25.88 Aligned_cols=13 Identities=31% Similarity=0.881 Sum_probs=6.7
Q ss_pred CCccccccccccc
Q 044813 335 NASCPVCRKRLRF 347 (352)
Q Consensus 335 ~~~CP~Cr~~l~~ 347 (352)
+..||+|.++|..
T Consensus 20 ~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 20 KGCCPLCGRPLDE 32 (54)
T ss_dssp SEE-TTT--EE-H
T ss_pred CCcCCCCCCCCCH
Confidence 3489999998854
No 136
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=45.04 E-value=3.2 Score=25.60 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=8.2
Q ss_pred HHHHHhhheeeeEeecc
Q 044813 232 GALFIIALGCYLCSKVW 248 (352)
Q Consensus 232 ~~i~~~~l~~~~~~~~r 248 (352)
+.++++.+++|.|+++|
T Consensus 16 ~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 16 MAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 33444445555555444
No 137
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.75 E-value=12 Score=36.89 Aligned_cols=37 Identities=27% Similarity=0.626 Sum_probs=30.3
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM 334 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~ 334 (352)
.....|.||.+.+.. .+..+. |+|.|+..|....+.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 457899999999876 455565 9999999999998854
No 138
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=42.16 E-value=14 Score=29.42 Aligned_cols=10 Identities=50% Similarity=1.361 Sum_probs=4.9
Q ss_pred EecC--CCCccc
Q 044813 180 SWSD--PHCAPC 189 (352)
Q Consensus 180 ~w~~--~~C~~C 189 (352)
.|+. ..|-+|
T Consensus 41 sWs~dLdkCm~C 52 (129)
T PF12191_consen 41 SWSADLDKCMSC 52 (129)
T ss_dssp EEETTTTEEEEC
T ss_pred cCcccccccccC
Confidence 3643 355555
No 139
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=41.88 E-value=38 Score=22.91 Aligned_cols=46 Identities=26% Similarity=0.514 Sum_probs=31.9
Q ss_pred cccccccccccCCC-eeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 298 NTCPICLSRYKPKQ-TLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 298 ~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
..|..|-.++..+. ..++.. =...|+.+|.+.-| +..||.|--.|.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICS-fECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICS-FECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcceEEe-EeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 46777877776655 333222 23569999999976 579999976654
No 140
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=41.72 E-value=7.2 Score=35.96 Aligned_cols=38 Identities=21% Similarity=0.450 Sum_probs=30.6
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN 335 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~ 335 (352)
..+|.+|+++|+.+.....+. |.-+||..|+-.|+++.
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTG 251 (288)
T ss_pred ceecHHHHHHHhcccccchhh-ccccccccccccccccc
Confidence 349999999998766666665 66699999999999753
No 141
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=41.36 E-value=23 Score=20.39 Aligned_cols=29 Identities=17% Similarity=0.427 Sum_probs=10.5
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhH
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCI 328 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci 328 (352)
.|.+|-+.... +..-.-+.|.-.+|.+|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 57888877665 334444459999999985
No 142
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=39.31 E-value=9.5 Score=29.70 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=1.4
Q ss_pred eeehhhhhHHHHHhhheeeeEeecccCC
Q 044813 224 IGIGFGTPGALFIIALGCYLCSKVWTHD 251 (352)
Q Consensus 224 i~i~~~~~~~i~~~~l~~~~~~~~r~~~ 251 (352)
++|++.++++.+++++.+.+|+|+...+
T Consensus 27 aGIGiL~VILgiLLliGCWYckRRSGYk 54 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRRSGYK 54 (118)
T ss_dssp -SSS------------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeecchhh
Confidence 4444444444445555566666555443
No 143
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=38.80 E-value=12 Score=25.53 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=16.8
Q ss_pred CCeeeeeCCCCCeechhhHHHH
Q 044813 310 KQTLRTIPKCNHYFHAYCIDKW 331 (352)
Q Consensus 310 ~~~~~~lp~C~H~FH~~Ci~~W 331 (352)
++.....+.|+|.|+..|..+|
T Consensus 37 ~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 37 GCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCCeeECCCCCCeECCCCCCcC
Confidence 3444556569999999999988
No 144
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=38.38 E-value=7.8 Score=35.21 Aligned_cols=45 Identities=24% Similarity=0.682 Sum_probs=32.7
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCCCC
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSPF 351 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~~ 351 (352)
...|+-|.+-+-..+.||.- =.|+||.+|+ .|-+|+++|...++|
T Consensus 92 GTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF--------~C~iC~R~L~TGdEF 136 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKA--QDFVYHLHCF--------ACFICKRQLATGDEF 136 (383)
T ss_pred CCcchhhcCCCChHHHHHHh--hcceeehhhh--------hhHhhhcccccCCee
Confidence 35788888877766666655 4799999994 477888888776654
No 145
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=37.96 E-value=12 Score=26.64 Aligned_cols=40 Identities=33% Similarity=0.710 Sum_probs=19.1
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
..|+.|..+++... +|.++..|-.. ++....||-|.++|.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 47888888765433 33344444332 344677999988774
No 146
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.87 E-value=17 Score=35.11 Aligned_cols=44 Identities=27% Similarity=0.566 Sum_probs=33.3
Q ss_pred ccccccccccccCCC--eeeeeCCCCCeechhhHHHHHhcCCccccc
Q 044813 297 DNTCPICLSRYKPKQ--TLRTIPKCNHYFHAYCIDKWLRMNASCPVC 341 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~--~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 341 (352)
-..|++|...++..+ ...+.. |||.|+..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 467888887765444 345566 99999999999998777777555
No 147
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.73 E-value=22 Score=21.04 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=13.5
Q ss_pred CCCCeechhhHHHHHhcCCccccccc
Q 044813 318 KCNHYFHAYCIDKWLRMNASCPVCRK 343 (352)
Q Consensus 318 ~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 343 (352)
.|||++-.+- ....||+|..
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCC
Confidence 4888876543 3348999965
No 148
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=36.69 E-value=34 Score=31.85 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=33.0
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCR 342 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr 342 (352)
....|-.|.++.+.+...+-- .|.|.|+.+|=.---+.=..||-|.
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCE-SCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CCcceeeeccccCCCCcEEch-hccceeeccchHHHHhhhhcCCCcC
Confidence 445599998887776655544 4999999999444334445699996
No 149
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=35.70 E-value=12 Score=34.50 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred ehhhhhHHHHHhhheeeeEeecccC
Q 044813 226 IGFGTPGALFIIALGCYLCSKVWTH 250 (352)
Q Consensus 226 i~~~~~~~i~~~~l~~~~~~~~r~~ 250 (352)
+++.+++++++++++.++|.|+||.
T Consensus 151 paVVI~~iLLIA~iIa~icyrrkR~ 175 (290)
T PF05454_consen 151 PAVVIAAILLIAGIIACICYRRKRK 175 (290)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4444444455555555555544433
No 151
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=34.46 E-value=29 Score=23.03 Aligned_cols=36 Identities=14% Similarity=0.393 Sum_probs=25.8
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHh
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR 333 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 333 (352)
..|.+|-..|..-..-.....||++|+.+|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 478899888776443333446999999999877653
No 152
>PRK05978 hypothetical protein; Provisional
Probab=34.23 E-value=22 Score=29.37 Aligned_cols=30 Identities=20% Similarity=0.630 Sum_probs=22.8
Q ss_pred eCCC--CCeechhhHHHHHhcCCcccccccccccCCC
Q 044813 316 IPKC--NHYFHAYCIDKWLRMNASCPVCRKRLRFKSP 350 (352)
Q Consensus 316 lp~C--~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~ 350 (352)
.|.| ||+|+ .+++.+..||.|-.++...+.
T Consensus 36 CP~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 36 CPACGEGKLFR-----AFLKPVDHCAACGEDFTHHRA 67 (148)
T ss_pred CCCCCCCcccc-----cccccCCCccccCCccccCCc
Confidence 3445 57886 688899999999988876543
No 153
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=34.02 E-value=28 Score=32.50 Aligned_cols=50 Identities=24% Similarity=0.610 Sum_probs=37.5
Q ss_pred CccccccccccccCCCeeeeeC-CCCCeechhhHHHHHhcCCcccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIP-KCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
-...|+||-+.....+.. .+| .|+|..|..|...-...+.+||.||++..
T Consensus 248 v~~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred cCCCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCccc
Confidence 457999999987444322 343 28888888888888888999999997654
No 154
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=33.86 E-value=26 Score=30.51 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=10.2
Q ss_pred ehhhhhHHHHHhhheeeeEeecc
Q 044813 226 IGFGTPGALFIIALGCYLCSKVW 248 (352)
Q Consensus 226 i~~~~~~~i~~~~l~~~~~~~~r 248 (352)
+..+.+++++++.++.|++..+|
T Consensus 106 v~~g~~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 106 VTSGSFLLLAILLGAGYCCHQRR 128 (202)
T ss_pred HHhhHHHHHHHHHHHHHHhhhhc
Confidence 33343444444444545544333
No 155
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=33.81 E-value=26 Score=21.32 Aligned_cols=27 Identities=33% Similarity=0.732 Sum_probs=16.3
Q ss_pred cccccccccccCCCe-------eeeeCCCCCeec
Q 044813 298 NTCPICLSRYKPKQT-------LRTIPKCNHYFH 324 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~-------~~~lp~C~H~FH 324 (352)
.+|+=|...|..+++ -...+.|+|+|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 367778777765542 112345888875
No 156
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=31.94 E-value=11 Score=34.43 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=14.4
Q ss_pred eehhhhhHHHHHhhheeeeEeecccCCc
Q 044813 225 GIGFGTPGALFIIALGCYLCSKVWTHDP 252 (352)
Q Consensus 225 ~i~~~~~~~i~~~~l~~~~~~~~r~~~~ 252 (352)
+|+..+++++.++.+++|+|-++||.++
T Consensus 262 giaalvllil~vvliiLYiWlyrrRK~s 289 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444444445555555666655555543
No 157
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=31.23 E-value=47 Score=28.19 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=5.3
Q ss_pred eeehhhhhHHHH
Q 044813 224 IGIGFGTPGALF 235 (352)
Q Consensus 224 i~i~~~~~~~i~ 235 (352)
++|+++++++++
T Consensus 78 ~~iivgvi~~Vi 89 (179)
T PF13908_consen 78 TGIIVGVICGVI 89 (179)
T ss_pred eeeeeehhhHHH
Confidence 444445544333
No 158
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=31.02 E-value=38 Score=31.43 Aligned_cols=48 Identities=15% Similarity=0.321 Sum_probs=36.3
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC---cccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA---SCPVCR 342 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~Cr 342 (352)
-..-..|++--++-.+...-..+. |||+.-++-++..-+... .||.|-
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ccceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 345588999877776666667786 999999999988765432 399994
No 159
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=29.62 E-value=18 Score=34.35 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=21.0
Q ss_pred ccceEEeeehhhhhHHHHHhhheeeeEeeccc
Q 044813 218 KYDAIIIGIGFGTPGALFIIALGCYLCSKVWT 249 (352)
Q Consensus 218 ~~~i~~i~i~~~~~~~i~~~~l~~~~~~~~r~ 249 (352)
..+|+++++++|+.++++++..++.+.+|+|+
T Consensus 317 ~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 317 PLVIMIMAVGLGVPLLLLILGGLYVCLRRRRK 348 (350)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhheEEEecccc
Confidence 35666677777777777777666666555543
No 160
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.92 E-value=32 Score=31.68 Aligned_cols=49 Identities=24% Similarity=0.659 Sum_probs=39.1
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRL 345 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l 345 (352)
......|-||...+...+... +|.|.|...|...|......||.|+...
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~q---g~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRIQ---GCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred cCCccceeeeeeeEEeccccc---CceeeeeecCCchhhhhhhccchhhcCc
Confidence 345678999988877654332 5999999999999999989999997643
No 161
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=28.38 E-value=26 Score=32.32 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=12.2
Q ss_pred EEeeehhhhhHHHHHhhheeeeEe
Q 044813 222 IIIGIGFGTPGALFIIALGCYLCS 245 (352)
Q Consensus 222 ~~i~i~~~~~~~i~~~~l~~~~~~ 245 (352)
+.++++++++++|.++.+++.+.+
T Consensus 232 IslAiALG~v~ll~l~Gii~~~~~ 255 (281)
T PF12768_consen 232 ISLAIALGTVFLLVLIGIILAYIR 255 (281)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554443
No 162
>PTZ00370 STEVOR; Provisional
Probab=27.93 E-value=13 Score=34.06 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=14.8
Q ss_pred eehhhhhHHHHHhhheeeeEeecccCCcc
Q 044813 225 GIGFGTPGALFIIALGCYLCSKVWTHDPQ 253 (352)
Q Consensus 225 ~i~~~~~~~i~~~~l~~~~~~~~r~~~~~ 253 (352)
+|+..+++++.++.+++|+|-++||.++.
T Consensus 258 giaalvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 34444444445555555666555555443
No 163
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=27.86 E-value=93 Score=22.61 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=21.3
Q ss_pred Ccccccccccccc---CCCeeeeeCCCCCeechhhHHHHHh-cCCcccccccccc
Q 044813 296 NDNTCPICLSRYK---PKQTLRTIPKCNHYFHAYCIDKWLR-MNASCPVCRKRLR 346 (352)
Q Consensus 296 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~l~ 346 (352)
....|-||=++.. .|+.-...-.|+--.+..|.+-=.+ .++.||.|+....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 4679999999874 3333333334677788889876654 3677999987653
No 164
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=27.17 E-value=27 Score=36.62 Aligned_cols=19 Identities=11% Similarity=0.224 Sum_probs=8.4
Q ss_pred HHHHHhhheeeeEeecccC
Q 044813 232 GALFIIALGCYLCSKVWTH 250 (352)
Q Consensus 232 ~~i~~~~l~~~~~~~~r~~ 250 (352)
++++++.+++++|+++...
T Consensus 285 ivl~lL~vLl~yCrrkc~~ 303 (807)
T PF10577_consen 285 IVLILLCVLLCYCRRKCLK 303 (807)
T ss_pred HHHHHHHHHHHhhhcccCC
Confidence 3334444445555444433
No 165
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=27.12 E-value=20 Score=26.50 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=12.0
Q ss_pred eeehhhhhHHHHHhhh-eeeeEeeccc
Q 044813 224 IGIGFGTPGALFIIAL-GCYLCSKVWT 249 (352)
Q Consensus 224 i~i~~~~~~~i~~~~l-~~~~~~~~r~ 249 (352)
+.+-+++++.++++.+ .++.|+++|+
T Consensus 33 Lgm~~lvI~~iFil~VilwfvCC~kRk 59 (94)
T PF05393_consen 33 LGMWFLVICGIFILLVILWFVCCKKRK 59 (94)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555555533333 3444555543
No 166
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=26.77 E-value=28 Score=23.91 Aligned_cols=10 Identities=30% Similarity=1.212 Sum_probs=5.5
Q ss_pred Cccccccccc
Q 044813 336 ASCPVCRKRL 345 (352)
Q Consensus 336 ~~CP~Cr~~l 345 (352)
+.||+|..++
T Consensus 40 p~CPlC~s~M 49 (59)
T PF14169_consen 40 PVCPLCKSPM 49 (59)
T ss_pred ccCCCcCCcc
Confidence 4566665544
No 167
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.49 E-value=17 Score=22.94 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=14.7
Q ss_pred CCCCeechhhHHHHHhcCCccccccc
Q 044813 318 KCNHYFHAYCIDKWLRMNASCPVCRK 343 (352)
Q Consensus 318 ~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 343 (352)
+|||.|...--..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 48888765321111 23456999987
No 168
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=25.50 E-value=42 Score=23.47 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=8.7
Q ss_pred eechhhHHHHHh
Q 044813 322 YFHAYCIDKWLR 333 (352)
Q Consensus 322 ~FH~~Ci~~Wl~ 333 (352)
-||..|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 169
>PF04872 Pox_L5: Poxvirus L5 protein family; InterPro: IPR006956 This family includes variola (smallpox) and vaccinia virus L5 proteins. L5 is thought to contain a metal-binding region [].
Probab=25.17 E-value=49 Score=24.10 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=21.9
Q ss_pred ceeEecCCceEE-eCCCCCceEEEEEeecccEEEEE
Q 044813 37 FELLCSRNKTIL-MLPRSGLFAVRNIDYNLQTLDIN 71 (352)
Q Consensus 37 f~L~C~~~~~~l-~l~~~~~y~V~~I~y~~~ti~v~ 71 (352)
=.|.|+++..+| .+|+++.+.-++| +.+-|++-
T Consensus 23 t~L~C~gn~L~I~~lpn~~~~~AL~l--d~~pI~~~ 56 (79)
T PF04872_consen 23 TSLSCEGNKLMIIGLPNGGIKPALAL--DGSPITYK 56 (79)
T ss_pred heeeeCCCceEEeecCCCCcchhhhc--CCCceech
Confidence 459999997777 9987555664444 45555543
No 170
>PLN02189 cellulose synthase
Probab=24.48 E-value=82 Score=34.35 Aligned_cols=51 Identities=20% Similarity=0.473 Sum_probs=36.4
Q ss_pred Ccccccccccccc---CCCeeeeeCCCCCeechhhHHHHHh-cCCcccccccccc
Q 044813 296 NDNTCPICLSRYK---PKQTLRTIPKCNHYFHAYCIDKWLR-MNASCPVCRKRLR 346 (352)
Q Consensus 296 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~l~ 346 (352)
....|.||-+++. +|+.-.....|+--.|..|.+-=.+ .++.||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4569999999975 4444444555777799999854333 3677999998765
No 171
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=24.28 E-value=13 Score=26.84 Aligned_cols=6 Identities=17% Similarity=-0.064 Sum_probs=2.2
Q ss_pred hhhhHH
Q 044813 228 FGTPGA 233 (352)
Q Consensus 228 ~~~~~~ 233 (352)
++++++
T Consensus 8 ~g~~~l 13 (75)
T PF14575_consen 8 VGVLLL 13 (75)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 172
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=23.74 E-value=26 Score=34.47 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=5.5
Q ss_pred cEEEEecCCC
Q 044813 99 NFTFLNCSSS 108 (352)
Q Consensus 99 ~~~~~nCs~~ 108 (352)
...+.||+..
T Consensus 235 ~~~y~~C~~~ 244 (439)
T PF02480_consen 235 SRRYANCSPS 244 (439)
T ss_dssp EEEEEEEBTT
T ss_pred HHhhcCCCCC
Confidence 3556666653
No 173
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=23.67 E-value=44 Score=20.36 Aligned_cols=30 Identities=27% Similarity=0.616 Sum_probs=18.7
Q ss_pred eeeCCCCCeechhhHHHHHhcCCccccccccc
Q 044813 314 RTIPKCNHYFHAYCIDKWLRMNASCPVCRKRL 345 (352)
Q Consensus 314 ~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l 345 (352)
++.++||++||..=--+ +....|..|..+|
T Consensus 2 r~C~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L 31 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP--KVEGVCDNCGGEL 31 (36)
T ss_dssp EEETTTTEEEETTTB----SSTTBCTTTTEBE
T ss_pred cCcCCCCCccccccCCC--CCCCccCCCCCee
Confidence 34567999999643211 3345688887655
No 174
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=23.35 E-value=53 Score=21.84 Aligned_cols=24 Identities=42% Similarity=0.928 Sum_probs=13.8
Q ss_pred CCCCCeechhhHHHHHhcCCccccc
Q 044813 317 PKCNHYFHAYCIDKWLRMNASCPVC 341 (352)
Q Consensus 317 p~C~H~FH~~Ci~~Wl~~~~~CP~C 341 (352)
+.|||.|...=-+. ......||.|
T Consensus 32 ~~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 32 PKCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCCeeEccHhhh-ccCCCCCCCC
Confidence 34777766543222 2456679987
No 175
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=22.75 E-value=33 Score=31.99 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=4.2
Q ss_pred ccCceee
Q 044813 151 PSSCEVI 157 (352)
Q Consensus 151 ~~~C~~~ 157 (352)
.+.|...
T Consensus 224 SY~C~se 230 (306)
T PF01299_consen 224 SYKCNSE 230 (306)
T ss_pred eeECCCC
Confidence 3567755
No 176
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=22.09 E-value=33 Score=31.41 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=9.2
Q ss_pred ceEEeeehhhhhHHHHHhhh
Q 044813 220 DAIIIGIGFGTPGALFIIAL 239 (352)
Q Consensus 220 ~i~~i~i~~~~~~~i~~~~l 239 (352)
|+++++.+.|++++.++..+
T Consensus 213 W~iv~g~~~G~~~L~ll~~l 232 (278)
T PF06697_consen 213 WKIVVGVVGGVVLLGLLSLL 232 (278)
T ss_pred EEEEEEehHHHHHHHHHHHH
Confidence 33344445555554444333
No 177
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.90 E-value=63 Score=25.23 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=11.2
Q ss_pred cCCcccccccccccCC
Q 044813 334 MNASCPVCRKRLRFKS 349 (352)
Q Consensus 334 ~~~~CP~Cr~~l~~~~ 349 (352)
+...|+.|++++....
T Consensus 84 r~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 84 RVDACMHCKEPLTLDP 99 (114)
T ss_pred hhhccCcCCCcCccCc
Confidence 3456888888886654
No 178
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=21.58 E-value=73 Score=18.28 Aligned_cols=29 Identities=17% Similarity=0.466 Sum_probs=18.4
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhH
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCI 328 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci 328 (352)
.|.||-.+..... .-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 5888866655442 3333348888888873
No 179
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=21.26 E-value=62 Score=33.13 Aligned_cols=28 Identities=36% Similarity=0.269 Sum_probs=12.3
Q ss_pred eEEeeehhhhh-HHHHHhhheeeeEeecc
Q 044813 221 AIIIGIGFGTP-GALFIIALGCYLCSKVW 248 (352)
Q Consensus 221 i~~i~i~~~~~-~~i~~~~l~~~~~~~~r 248 (352)
|+|+++++-++ ++++++++.+.+|++.+
T Consensus 270 WII~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 270 WIIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred EEEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 33344444444 33344444455554433
No 180
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=20.75 E-value=87 Score=37.43 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=10.4
Q ss_pred CCceeeecCCCcceEEecCCC
Q 044813 193 GEVCKFTNDDTSLVVGCSNSG 213 (352)
Q Consensus 193 gg~Cg~~~~~~~~~f~C~c~~ 213 (352)
||+|-.-. ..|.|.|.+
T Consensus 3953 gg~C~n~~----gsf~CncT~ 3969 (4289)
T KOG1219|consen 3953 GGQCINIP----GSFHCNCTP 3969 (4289)
T ss_pred CceeeccC----CceEeccCh
Confidence 56674322 359999943
No 181
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=20.59 E-value=79 Score=20.38 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=11.5
Q ss_pred ceEEeeehhhhhHHHHHhhhe
Q 044813 220 DAIIIGIGFGTPGALFIIALG 240 (352)
Q Consensus 220 ~i~~i~i~~~~~~~i~~~~l~ 240 (352)
|+.++.+++|.+++++++.+-
T Consensus 2 Wl~V~~iilg~~ll~~LigiC 22 (49)
T PF05624_consen 2 WLFVVLIILGALLLLLLIGIC 22 (49)
T ss_pred eEEEeHHHHHHHHHHHHHHHH
Confidence 344455556666666555553
Done!