Query 044813
Match_columns 352
No_of_seqs 254 out of 2140
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 12:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.8E-17 6.1E-22 125.5 7.9 81 265-347 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 6.8E-17 2.3E-21 117.7 4.9 69 277-348 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 6.3E-16 2.2E-20 105.4 4.0 52 295-346 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 1.6E-15 5.3E-20 108.6 6.0 56 294-350 11-66 (69)
5 2ep4_A Ring finger protein 24; 99.6 3.3E-15 1.1E-19 108.4 6.1 55 294-349 12-66 (74)
6 2ect_A Ring finger protein 126 99.5 3.8E-15 1.3E-19 109.2 5.4 56 294-350 12-67 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 1.8E-15 6E-20 111.8 3.4 53 296-348 14-77 (81)
8 2ecm_A Ring finger and CHY zin 99.5 2.1E-14 7.1E-19 97.8 4.5 51 295-346 3-54 (55)
9 3dpl_R Ring-box protein 1; ubi 99.5 3.6E-14 1.2E-18 109.8 4.4 52 296-348 36-102 (106)
10 3ng2_A RNF4, snurf, ring finge 99.5 2.8E-14 9.5E-19 102.5 3.4 55 294-349 7-65 (71)
11 2ea6_A Ring finger protein 4; 99.4 7.2E-14 2.5E-18 99.7 4.5 53 294-347 12-68 (69)
12 2d8s_A Cellular modulator of i 99.4 1.2E-13 3.9E-18 101.3 4.9 54 294-349 12-72 (80)
13 2xeu_A Ring finger protein 4; 99.4 6.5E-14 2.2E-18 98.3 3.3 53 296-349 2-58 (64)
14 1v87_A Deltex protein 2; ring- 99.4 1.4E-13 5E-18 108.3 5.1 52 296-348 24-95 (114)
15 2djb_A Polycomb group ring fin 99.4 3E-13 1E-17 97.4 5.6 55 294-351 12-66 (72)
16 2ecn_A Ring finger protein 141 99.4 2E-13 6.9E-18 97.7 3.7 51 295-350 13-63 (70)
17 4a0k_B E3 ubiquitin-protein li 99.3 8.5E-14 2.9E-18 109.2 0.2 52 296-348 47-113 (117)
18 1chc_A Equine herpes virus-1 r 99.3 5.9E-13 2E-17 94.7 3.9 50 295-347 3-52 (68)
19 2d8t_A Dactylidin, ring finger 99.3 5.4E-13 1.8E-17 95.8 3.7 50 294-347 12-61 (71)
20 2ct0_A Non-SMC element 1 homol 99.3 1.8E-12 6.1E-17 92.9 5.2 53 295-350 13-67 (74)
21 2ct2_A Tripartite motif protei 99.3 2.5E-12 8.6E-17 96.2 5.9 54 294-348 12-69 (88)
22 2yur_A Retinoblastoma-binding 99.3 3.3E-12 1.1E-16 92.4 5.8 55 294-351 12-68 (74)
23 2ecy_A TNF receptor-associated 99.3 4.2E-12 1.4E-16 89.7 5.1 52 295-350 13-65 (66)
24 2ysl_A Tripartite motif-contai 99.2 7.9E-12 2.7E-16 90.0 5.0 52 294-349 17-71 (73)
25 2csy_A Zinc finger protein 183 99.2 1.1E-11 3.7E-16 91.3 5.4 48 295-346 13-60 (81)
26 4ap4_A E3 ubiquitin ligase RNF 99.2 6.6E-12 2.3E-16 101.2 3.5 54 295-349 5-62 (133)
27 4ayc_A E3 ubiquitin-protein li 99.2 9.2E-12 3.2E-16 101.4 2.6 49 296-348 52-100 (138)
28 1g25_A CDK-activating kinase a 99.2 1.9E-11 6.3E-16 86.0 3.8 53 296-349 2-57 (65)
29 3lrq_A E3 ubiquitin-protein li 99.1 1.3E-11 4.6E-16 94.6 3.0 50 296-348 21-71 (100)
30 1t1h_A Gspef-atpub14, armadill 99.1 3.5E-11 1.2E-15 87.8 5.0 52 294-349 5-57 (78)
31 2ecw_A Tripartite motif-contai 99.1 5E-11 1.7E-15 88.3 5.5 50 295-348 17-72 (85)
32 2ysj_A Tripartite motif-contai 99.1 7.1E-11 2.4E-15 82.4 5.7 44 294-341 17-63 (63)
33 2ckl_A Polycomb group ring fin 99.1 4E-11 1.4E-15 93.3 4.4 51 296-349 14-64 (108)
34 2ecv_A Tripartite motif-contai 99.1 6.5E-11 2.2E-15 87.7 5.2 51 295-349 17-73 (85)
35 2y43_A E3 ubiquitin-protein li 99.1 2.8E-11 9.5E-16 92.7 3.2 50 296-348 21-70 (99)
36 2egp_A Tripartite motif-contai 99.1 1.5E-11 5E-16 90.0 1.5 51 294-348 9-66 (79)
37 4ap4_A E3 ubiquitin ligase RNF 99.1 3.1E-11 1.1E-15 97.3 3.5 54 295-349 70-127 (133)
38 2ecj_A Tripartite motif-contai 99.1 6.8E-11 2.3E-15 81.0 4.0 43 295-341 13-58 (58)
39 3ztg_A E3 ubiquitin-protein li 99.0 1.8E-10 6.2E-15 86.8 5.4 50 294-346 10-61 (92)
40 3fl2_A E3 ubiquitin-protein li 99.0 1.7E-10 5.8E-15 92.0 3.9 48 296-347 51-99 (124)
41 2ckl_B Ubiquitin ligase protei 99.0 2.2E-10 7.6E-15 96.0 3.8 49 296-347 53-102 (165)
42 1jm7_A BRCA1, breast cancer ty 99.0 2.2E-10 7.4E-15 89.6 3.1 50 296-349 20-72 (112)
43 1rmd_A RAG1; V(D)J recombinati 98.9 1.3E-10 4.5E-15 91.6 1.3 50 296-349 22-72 (116)
44 3hct_A TNF receptor-associated 98.9 3.1E-10 1.1E-14 89.7 3.4 51 294-348 15-66 (118)
45 2vje_A E3 ubiquitin-protein li 98.9 3.9E-10 1.3E-14 78.9 3.3 50 295-347 6-57 (64)
46 1e4u_A Transcriptional repress 98.9 7.9E-10 2.7E-14 80.4 4.8 55 294-349 8-64 (78)
47 1z6u_A NP95-like ring finger p 98.9 6E-10 2E-14 91.8 3.9 49 296-348 77-126 (150)
48 3l11_A E3 ubiquitin-protein li 98.9 2.2E-10 7.7E-15 90.0 0.9 49 295-347 13-62 (115)
49 1bor_A Transcription factor PM 98.9 4.4E-10 1.5E-14 76.4 1.8 49 295-350 4-52 (56)
50 2kr4_A Ubiquitin conjugation f 98.9 1.9E-09 6.4E-14 79.9 4.6 52 294-349 11-62 (85)
51 2vje_B MDM4 protein; proto-onc 98.8 1.3E-09 4.4E-14 76.0 3.3 51 295-347 5-56 (63)
52 2kre_A Ubiquitin conjugation f 98.8 1.9E-09 6.4E-14 82.4 4.2 52 294-349 26-77 (100)
53 1vyx_A ORF K3, K3RING; zinc-bi 98.8 2.3E-09 7.8E-14 73.7 3.9 49 295-347 4-59 (60)
54 3knv_A TNF receptor-associated 98.8 1.4E-09 4.6E-14 88.6 3.3 49 295-347 29-78 (141)
55 2y1n_A E3 ubiquitin-protein li 98.8 2E-09 6.9E-14 100.8 4.4 50 296-349 331-381 (389)
56 1wgm_A Ubiquitin conjugation f 98.8 3.7E-09 1.2E-13 80.5 4.8 51 295-349 20-71 (98)
57 3k1l_B Fancl; UBC, ring, RWD, 98.8 2.2E-09 7.4E-14 97.7 2.8 55 295-349 306-375 (381)
58 1jm7_B BARD1, BRCA1-associated 98.7 2.3E-09 7.8E-14 84.5 1.5 48 296-348 21-68 (117)
59 4ic3_A E3 ubiquitin-protein li 98.7 3.6E-09 1.2E-13 76.2 1.5 45 296-348 23-68 (74)
60 1wim_A KIAA0161 protein; ring 98.6 1.6E-08 5.4E-13 76.4 2.3 49 295-344 3-61 (94)
61 3hcs_A TNF receptor-associated 98.6 1.7E-08 5.9E-13 84.8 2.7 50 295-348 16-66 (170)
62 2yu4_A E3 SUMO-protein ligase 98.6 2.6E-08 9E-13 75.2 3.2 50 295-347 5-63 (94)
63 2ea5_A Cell growth regulator w 98.6 3.9E-08 1.3E-12 69.4 3.7 46 294-347 12-58 (68)
64 2ecg_A Baculoviral IAP repeat- 98.5 5.5E-08 1.9E-12 70.1 2.4 46 296-349 24-70 (75)
65 2c2l_A CHIP, carboxy terminus 98.4 1.5E-07 5.1E-12 85.2 4.4 52 294-349 205-257 (281)
66 2yho_A E3 ubiquitin-protein li 98.4 8.4E-08 2.9E-12 69.8 1.4 44 296-347 17-61 (79)
67 2f42_A STIP1 homology and U-bo 98.3 2.6E-07 8.9E-12 77.6 3.4 52 294-349 103-155 (179)
68 2bay_A PRE-mRNA splicing facto 98.3 2.7E-07 9.1E-12 63.5 2.7 50 297-349 3-52 (61)
69 3htk_C E3 SUMO-protein ligase 98.1 1E-06 3.6E-11 77.7 3.5 52 295-349 179-234 (267)
70 3vk6_A E3 ubiquitin-protein li 98.1 2.7E-06 9.2E-11 63.2 4.0 44 300-346 4-48 (101)
71 3t6p_A Baculoviral IAP repeat- 98.1 1.1E-06 3.8E-11 81.7 2.2 44 296-347 294-338 (345)
72 3nw0_A Non-structural maintena 98.0 4.1E-06 1.4E-10 73.9 5.5 54 296-352 179-234 (238)
73 2lri_C Autoimmune regulator; Z 95.2 0.017 5.8E-07 39.8 3.6 47 295-345 10-60 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 92.7 0.075 2.6E-06 39.6 3.2 35 296-331 2-36 (101)
75 2ko5_A Ring finger protein Z; 92.0 0.073 2.5E-06 38.8 2.1 50 295-349 26-75 (99)
76 2l5u_A Chromodomain-helicase-D 91.6 0.11 3.7E-06 35.1 2.6 47 294-344 8-58 (61)
77 2puy_A PHD finger protein 21A; 91.1 0.044 1.5E-06 36.9 0.2 52 296-351 4-59 (60)
78 1wil_A KIAA1045 protein; ring 88.8 0.4 1.4E-05 34.2 3.6 36 294-331 12-47 (89)
79 1we9_A PHD finger family prote 88.7 0.14 4.7E-06 34.8 1.2 50 295-344 4-58 (64)
80 2yql_A PHD finger protein 21A; 88.7 0.098 3.3E-06 34.6 0.4 46 294-343 6-55 (56)
81 1xwh_A Autoimmune regulator; P 87.6 0.13 4.4E-06 35.3 0.4 46 294-343 5-54 (66)
82 1fp0_A KAP-1 corepressor; PHD 87.2 0.33 1.1E-05 35.3 2.4 52 294-349 22-77 (88)
83 1mm2_A MI2-beta; PHD, zinc fin 86.7 0.18 6.3E-06 33.9 0.8 47 295-345 7-57 (61)
84 1f62_A Transcription factor WS 84.8 0.38 1.3E-05 30.9 1.6 44 299-343 2-49 (51)
85 2ku3_A Bromodomain-containing 84.3 0.41 1.4E-05 33.3 1.7 51 294-344 13-66 (71)
86 3v43_A Histone acetyltransfera 82.1 0.38 1.3E-05 36.6 0.9 45 299-343 63-111 (112)
87 2l43_A N-teminal domain from h 82.0 0.55 1.9E-05 34.1 1.6 53 295-347 23-78 (88)
88 2k16_A Transcription initiatio 80.7 0.55 1.9E-05 32.9 1.2 51 295-346 16-70 (75)
89 2ysm_A Myeloid/lymphoid or mix 80.1 0.6 2.1E-05 35.4 1.4 39 294-333 4-42 (111)
90 1wep_A PHF8; structural genomi 76.1 2.4 8.3E-05 29.8 3.5 48 296-344 11-63 (79)
91 2vpb_A Hpygo1, pygopus homolog 76.0 2.3 8E-05 28.8 3.2 49 295-343 6-65 (65)
92 2e6r_A Jumonji/ARID domain-con 73.6 0.62 2.1E-05 34.1 -0.2 49 295-344 14-66 (92)
93 1wev_A Riken cDNA 1110020M19; 73.4 0.35 1.2E-05 35.2 -1.6 52 296-347 15-75 (88)
94 2xb1_A Pygopus homolog 2, B-ce 72.8 0.76 2.6E-05 34.6 0.1 49 297-345 3-62 (105)
95 3v43_A Histone acetyltransfera 72.7 5 0.00017 30.2 4.8 35 296-330 4-43 (112)
96 2yt5_A Metal-response element- 71.9 2.5 8.5E-05 28.5 2.6 53 295-347 4-64 (66)
97 2e6s_A E3 ubiquitin-protein li 71.9 0.86 3E-05 32.2 0.2 45 298-343 27-76 (77)
98 4gne_A Histone-lysine N-methyl 71.6 4.1 0.00014 30.6 4.0 46 294-345 12-63 (107)
99 3asl_A E3 ubiquitin-protein li 71.0 0.84 2.9E-05 31.6 -0.0 44 299-343 20-68 (70)
100 2kgg_A Histone demethylase jar 69.7 1.9 6.4E-05 27.8 1.5 44 299-342 4-52 (52)
101 1wen_A Inhibitor of growth fam 69.0 3.6 0.00012 28.4 2.9 47 295-346 14-67 (71)
102 3ql9_A Transcriptional regulat 68.8 4.1 0.00014 31.7 3.5 45 295-343 55-110 (129)
103 2kwj_A Zinc finger protein DPF 67.4 4.6 0.00016 30.6 3.5 34 298-331 2-41 (114)
104 2ri7_A Nucleosome-remodeling f 66.1 1.8 6.2E-05 35.5 1.0 48 295-343 6-58 (174)
105 3shb_A E3 ubiquitin-protein li 65.7 1 3.4E-05 31.8 -0.5 44 299-343 28-76 (77)
106 2lv9_A Histone-lysine N-methyl 65.6 2.9 0.0001 30.8 2.0 46 296-343 27-75 (98)
107 2kwj_A Zinc finger protein DPF 65.3 0.92 3.1E-05 34.6 -0.9 50 299-349 60-113 (114)
108 2lbm_A Transcriptional regulat 65.1 7.4 0.00025 30.8 4.4 45 295-343 61-116 (142)
109 1weu_A Inhibitor of growth fam 64.8 4.3 0.00015 29.5 2.7 47 295-346 34-87 (91)
110 2cs3_A Protein C14ORF4, MY039 64.4 7.5 0.00026 27.3 3.7 40 294-334 12-52 (93)
111 1wew_A DNA-binding family prot 62.6 3.6 0.00012 28.8 2.0 50 295-346 14-74 (78)
112 3m62_A Ubiquitin conjugation f 61.2 5.3 0.00018 41.5 3.6 52 294-349 888-940 (968)
113 1g47_A Pinch protein; LIM doma 60.4 9.3 0.00032 26.1 3.8 44 295-348 9-52 (77)
114 1z2q_A LM5-1; membrane protein 60.1 9 0.00031 27.2 3.7 53 295-347 19-79 (84)
115 2vnf_A ING 4, P29ING4, inhibit 59.5 3.6 0.00012 27.3 1.4 43 296-343 9-58 (60)
116 3c6w_A P28ING5, inhibitor of g 58.7 4 0.00014 27.0 1.5 43 296-343 8-57 (59)
117 1wem_A Death associated transc 58.5 6.3 0.00021 27.4 2.6 47 297-345 16-71 (76)
118 2yw8_A RUN and FYVE domain-con 58.5 8.7 0.0003 27.1 3.4 50 296-345 18-73 (82)
119 2ks1_B Epidermal growth factor 58.1 1.7 5.7E-05 27.1 -0.5 7 230-236 21-27 (44)
120 2rsd_A E3 SUMO-protein ligase 57.2 2 6.8E-05 29.4 -0.3 46 296-343 9-64 (68)
121 2co8_A NEDD9 interacting prote 56.8 11 0.00038 26.3 3.8 42 295-347 13-54 (82)
122 1weo_A Cellulose synthase, cat 56.8 20 0.00069 25.7 4.9 51 296-346 15-69 (93)
123 1wyh_A SLIM 2, skeletal muscle 56.2 8.4 0.00029 25.9 2.9 41 297-347 5-45 (72)
124 1wee_A PHD finger family prote 55.7 1.9 6.6E-05 29.8 -0.5 49 296-345 15-67 (72)
125 2jwa_A Receptor tyrosine-prote 55.6 0.95 3.2E-05 28.1 -1.9 20 224-244 15-34 (44)
126 3t7l_A Zinc finger FYVE domain 55.5 9.3 0.00032 27.5 3.2 50 296-345 19-74 (90)
127 1x4u_A Zinc finger, FYVE domai 55.5 10 0.00034 26.9 3.3 37 295-331 12-48 (84)
128 1x4k_A Skeletal muscle LIM-pro 55.5 8.8 0.0003 25.8 2.9 41 297-347 5-45 (72)
129 2dj7_A Actin-binding LIM prote 55.5 11 0.00039 26.1 3.6 41 295-346 13-53 (80)
130 1iml_A CRIP, cysteine rich int 55.5 6.5 0.00022 26.9 2.3 41 298-343 28-69 (76)
131 1vfy_A Phosphatidylinositol-3- 55.4 10 0.00034 26.1 3.2 33 298-330 12-44 (73)
132 2cu8_A Cysteine-rich protein 2 55.2 9.1 0.00031 26.2 3.0 41 296-347 8-48 (76)
133 1wfk_A Zinc finger, FYVE domai 54.6 10 0.00034 27.3 3.2 51 295-345 7-64 (88)
134 3o70_A PHD finger protein 13; 54.0 4.3 0.00015 27.7 1.0 47 295-343 17-66 (68)
135 1x61_A Thyroid receptor intera 54.0 14 0.00049 24.7 3.9 39 297-345 5-43 (72)
136 2g6q_A Inhibitor of growth pro 53.0 5.7 0.00019 26.5 1.5 46 296-344 10-60 (62)
137 1x63_A Skeletal muscle LIM-pro 52.6 12 0.00042 25.8 3.4 42 297-348 15-56 (82)
138 1joc_A EEA1, early endosomal a 51.8 11 0.00037 29.1 3.2 36 296-331 68-103 (125)
139 3ask_A E3 ubiquitin-protein li 51.6 4.4 0.00015 34.7 0.9 47 297-344 174-225 (226)
140 1y02_A CARP2, FYVE-ring finger 51.5 3.3 0.00011 31.8 0.1 48 296-343 18-65 (120)
141 1x4l_A Skeletal muscle LIM-pro 51.1 16 0.00056 24.4 3.8 41 296-346 4-46 (72)
142 2ysm_A Myeloid/lymphoid or mix 50.4 3.1 0.0001 31.3 -0.2 45 299-344 56-104 (111)
143 2cor_A Pinch protein; LIM doma 48.6 19 0.00064 24.8 3.8 41 295-347 13-53 (79)
144 3f6q_B LIM and senescent cell 48.5 17 0.00057 24.2 3.5 43 296-348 10-52 (72)
145 2d8y_A Eplin protein; LIM doma 47.8 27 0.00093 24.7 4.7 41 296-347 14-54 (91)
146 3i2d_A E3 SUMO-protein ligase 46.0 8.7 0.0003 35.4 2.0 50 297-349 249-302 (371)
147 2a20_A Regulating synaptic mem 45.7 3 0.0001 27.5 -0.8 50 294-344 6-60 (62)
148 4fo9_A E3 SUMO-protein ligase 45.5 9.1 0.00031 35.2 2.1 50 297-349 215-268 (360)
149 1x68_A FHL5 protein; four-and- 45.2 19 0.00066 24.4 3.4 40 297-346 5-46 (76)
150 1a7i_A QCRP2 (LIM1); LIM domai 44.5 9 0.00031 26.6 1.5 42 296-348 6-47 (81)
151 1zbd_B Rabphilin-3A; G protein 43.6 16 0.00053 28.6 2.9 49 295-343 53-106 (134)
152 3zyq_A Hepatocyte growth facto 43.0 21 0.00071 30.4 3.9 50 297-346 164-221 (226)
153 2gmg_A Hypothetical protein PF 42.6 4.4 0.00015 30.2 -0.4 27 318-349 72-98 (105)
154 1dvp_A HRS, hepatocyte growth 41.6 15 0.00052 31.1 2.8 35 297-331 161-195 (220)
155 1nyp_A Pinch protein; LIM doma 39.8 18 0.00062 23.7 2.5 39 297-347 5-43 (66)
156 2l3k_A Rhombotin-2, linker, LI 39.4 11 0.00038 28.6 1.4 33 298-332 37-69 (123)
157 1x62_A C-terminal LIM domain p 39.0 33 0.0011 23.4 3.9 39 296-346 14-52 (79)
158 1x6a_A LIMK-2, LIM domain kina 38.0 20 0.00068 24.7 2.5 38 298-347 16-53 (81)
159 1z60_A TFIIH basal transcripti 36.8 14 0.00049 24.3 1.5 43 298-341 16-58 (59)
160 1brz_A Brazzein; sweet protein 36.3 7.4 0.00025 24.8 -0.0 18 191-211 32-49 (54)
161 1x64_A Alpha-actinin-2 associa 35.6 58 0.002 22.7 4.8 41 296-348 24-64 (89)
162 1v6g_A Actin binding LIM prote 34.7 20 0.00067 24.7 2.1 38 298-347 16-53 (81)
163 2d8x_A Protein pinch; LIM doma 34.5 30 0.001 22.9 3.0 39 297-347 5-43 (70)
164 3a1b_A DNA (cytosine-5)-methyl 33.5 42 0.0014 26.9 3.9 35 295-333 77-113 (159)
165 3kqi_A GRC5, PHD finger protei 33.3 12 0.00041 25.8 0.7 46 299-344 11-61 (75)
166 3mjh_B Early endosome antigen 33.2 5 0.00017 23.4 -1.1 16 296-311 4-19 (34)
167 2d8v_A Zinc finger FYVE domain 32.2 38 0.0013 22.8 2.9 34 294-332 5-39 (67)
168 2dar_A PDZ and LIM domain prot 32.1 36 0.0012 23.9 3.2 40 296-347 24-63 (90)
169 2d8z_A Four and A half LIM dom 31.8 45 0.0015 21.9 3.5 38 297-346 5-42 (70)
170 2xjy_A Rhombotin-2; oncoprotei 31.6 23 0.0008 26.9 2.2 38 299-346 68-105 (131)
171 2egq_A FHL1 protein; LIM domai 31.5 38 0.0013 22.9 3.1 41 297-347 15-58 (77)
172 2cup_A Skeletal muscle LIM-pro 31.3 45 0.0016 23.8 3.7 46 298-348 34-79 (101)
173 2jvx_A NF-kappa-B essential mo 31.1 11 0.00037 20.9 0.1 12 335-346 3-14 (28)
174 3o7a_A PHD finger protein 13 v 30.8 12 0.0004 23.8 0.2 41 302-343 8-51 (52)
175 2zet_C Melanophilin; complex, 30.6 34 0.0012 27.3 3.0 48 295-343 66-116 (153)
176 1zfo_A LAsp-1; LIM domain, zin 30.6 22 0.00077 19.8 1.4 28 298-328 4-31 (31)
177 2jmi_A Protein YNG1, ING1 homo 30.4 13 0.00044 26.9 0.5 46 295-343 24-75 (90)
178 2ehe_A Four and A half LIM dom 30.3 33 0.0011 23.5 2.7 40 297-346 15-54 (82)
179 1wig_A KIAA1808 protein; LIM d 29.2 43 0.0015 22.5 3.0 26 298-327 6-31 (73)
180 2jne_A Hypothetical protein YF 29.1 15 0.0005 26.9 0.5 42 297-347 32-73 (101)
181 2iyb_E Testin, TESS, TES; LIM 29.0 39 0.0013 22.1 2.7 39 298-346 3-43 (65)
182 1rut_X Flinc4, fusion protein 28.8 29 0.00099 28.4 2.4 38 299-346 71-108 (188)
183 3mpx_A FYVE, rhogef and PH dom 28.0 12 0.00043 35.0 0.0 51 296-346 374-431 (434)
184 2l4z_A DNA endonuclease RBBP8, 27.1 55 0.0019 24.7 3.6 40 296-346 60-99 (123)
185 2cur_A Skeletal muscle LIM-pro 25.7 69 0.0024 20.9 3.6 38 297-346 5-42 (69)
186 2cuq_A Four and A half LIM dom 25.4 58 0.002 22.0 3.2 38 297-346 15-52 (80)
187 2rgt_A Fusion of LIM/homeobox 25.3 46 0.0016 26.6 3.0 36 298-334 94-129 (169)
188 2l8s_A Integrin alpha-1; trans 25.1 7.2 0.00025 25.2 -1.5 24 217-240 7-30 (54)
189 2knc_A Integrin alpha-IIB; tra 22.6 8.6 0.0003 24.9 -1.5 22 218-239 11-32 (54)
190 2pv0_B DNA (cytosine-5)-methyl 22.3 68 0.0023 29.6 3.8 34 295-332 91-126 (386)
191 2dlo_A Thyroid receptor-intera 22.2 66 0.0023 21.9 3.0 39 296-346 14-52 (81)
192 2pk7_A Uncharacterized protein 22.1 18 0.00063 24.6 -0.0 17 330-346 3-19 (69)
193 2jmo_A Parkin; IBR, E3 ligase, 21.3 16 0.00053 25.6 -0.6 19 318-338 55-73 (80)
194 1x3h_A Leupaxin; paxillin fami 21.1 63 0.0021 21.9 2.7 39 297-347 15-53 (80)
195 3u7u_G Neuregulin 1; signaling 20.2 47 0.0016 21.3 1.6 25 186-213 8-40 (55)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=125.50 Aligned_cols=81 Identities=31% Similarity=0.696 Sum_probs=69.6
Q ss_pred CcchhccCCChHhhhcCCceeeccCCCCCCCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccc
Q 044813 265 STSTVVASLDKPTIESYPKTIVGVSGRQPKPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKR 344 (352)
Q Consensus 265 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 344 (352)
.......+++++.++.+|...+..... ...++..|+||+++|..++.++.+| |+|.||..||+.|++.+.+||+||+.
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCCcCCCCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 334567789999999999988876543 2456789999999999999999999 99999999999999999999999998
Q ss_pred ccc
Q 044813 345 LRF 347 (352)
Q Consensus 345 l~~ 347 (352)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.8e-17 Score=117.73 Aligned_cols=69 Identities=33% Similarity=0.835 Sum_probs=58.5
Q ss_pred hhhcCCceeeccCCCCCCCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 277 TIESYPKTIVGVSGRQPKPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 277 ~i~~l~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
.++.+|...+..... ..++.+|+||+++|..++.++.+| |+|+||.+||++|++.+.+||+||+++...
T Consensus 5 ~i~~lp~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNH--QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSC--SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccc--cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 456677777765432 456789999999999999999999 999999999999999999999999988654
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.59 E-value=6.3e-16 Score=105.43 Aligned_cols=52 Identities=35% Similarity=0.931 Sum_probs=47.2
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
+++.+|+||++++.+++.++.++.|+|.||.+||.+|++++.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567999999999999888888679999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=108.57 Aligned_cols=56 Identities=38% Similarity=0.978 Sum_probs=50.5
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSP 350 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~ 350 (352)
...+..|+||++.|..++.++.++ |+|.||.+||.+|++.+.+||+||+.+....|
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 456789999999999888899998 99999999999999999999999999877655
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.3e-15 Score=108.41 Aligned_cols=55 Identities=33% Similarity=0.837 Sum_probs=49.2
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
...+.+|+||++++..++.++.++ |+|.||.+||.+|++.+.+||+||+++....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 345779999999999999999998 9999999999999999999999999886543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=3.8e-15 Score=109.19 Aligned_cols=56 Identities=41% Similarity=0.939 Sum_probs=50.2
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSP 350 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~ 350 (352)
..++.+|+||+++|..++.++.++ |+|.||.+||.+|++.+.+||+||+.+..++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 445789999999999998888998 99999999999999999999999999876553
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-15 Score=111.82 Aligned_cols=53 Identities=28% Similarity=0.773 Sum_probs=43.2
Q ss_pred CccccccccccccC-----------CCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKP-----------KQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
++.+|+||+++|.+ ++.++.++.|+|.||.+||++|++++.+||+||+++..+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45678888888754 455666656999999999999999999999999998654
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.48 E-value=2.1e-14 Score=97.78 Aligned_cols=51 Identities=27% Similarity=0.776 Sum_probs=44.0
Q ss_pred CCccccccccccccCCC-eeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQ-TLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
.++.+|+||++++.+++ .++.++ |+|.||.+||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35679999999996644 567787 9999999999999999999999999874
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.45 E-value=3.6e-14 Score=109.79 Aligned_cols=52 Identities=31% Similarity=0.678 Sum_probs=44.2
Q ss_pred CccccccccccccCCC---------------eeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQ---------------TLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
++..|+||+++|.+.. .++.++ |+|.||.+||++||+.+.+||+||+++..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 4678999999998651 356677 999999999999999999999999987543
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.45 E-value=2.8e-14 Score=102.50 Aligned_cols=55 Identities=29% Similarity=0.780 Sum_probs=46.8
Q ss_pred CCCccccccccccccCC----CeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPK----QTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
..++.+|+||++.+.+. +.++.++ |||.||.+||++|++.+.+||+||+.+..++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 34678999999998753 4556777 9999999999999999999999999987654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.2e-14 Score=99.67 Aligned_cols=53 Identities=28% Similarity=0.791 Sum_probs=45.2
Q ss_pred CCCccccccccccccCC----CeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 294 KPNDNTCPICLSRYKPK----QTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
..++.+|+||++.+.+. +.+..++ |||.||.+||+.|++.+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34678999999999764 3446777 99999999999999999999999998864
No 12
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=101.29 Aligned_cols=54 Identities=22% Similarity=0.788 Sum_probs=45.4
Q ss_pred CCCccccccccccccCCCeeeeeCCCC-----CeechhhHHHHHhcC--CcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCN-----HYFHAYCIDKWLRMN--ASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~Cr~~l~~~~ 349 (352)
..++..|+|||+++.+++.+ ++| |+ |.||.+||++|++.+ .+||+||+.+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 44567999999999887776 588 96 999999999999765 58999999886644
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.42 E-value=6.5e-14 Score=98.32 Aligned_cols=53 Identities=30% Similarity=0.788 Sum_probs=45.5
Q ss_pred CccccccccccccCC----CeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 296 NDNTCPICLSRYKPK----QTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
++.+|+||++++.+. +.+..++ |||.||.+||.+|++++.+||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 467999999999753 4556787 9999999999999999999999999987654
No 14
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.41 E-value=1.4e-13 Score=108.33 Aligned_cols=52 Identities=25% Similarity=0.574 Sum_probs=42.5
Q ss_pred CccccccccccccCCC---------------eeeeeCCCCCeechhhHHHHH-----hcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQ---------------TLRTIPKCNHYFHAYCIDKWL-----RMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~Cr~~l~~~ 348 (352)
.+..|+|||++|.++. .++.++ |+|+||.+||++|+ +.+.+||+||+.+..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4569999999997653 344677 99999999999999 4567899999988654
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3e-13 Score=97.39 Aligned_cols=55 Identities=22% Similarity=0.446 Sum_probs=46.6
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCCCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSPF 351 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~~ 351 (352)
..++..|+||++.+.+. +.+++ |||.||.+||..|++.+.+||+||+.+...+++
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred cCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 34578999999998863 44447 999999999999999899999999999877764
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2e-13 Score=97.73 Aligned_cols=51 Identities=31% Similarity=0.821 Sum_probs=44.9
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSP 350 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~ 350 (352)
.++..|+||++.+.+ ..++ |+|.||.+||.+|++.+.+||+||+.+...+.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 457899999999876 6788 99999999999999999999999999876553
No 17
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.35 E-value=8.5e-14 Score=109.16 Aligned_cols=52 Identities=31% Similarity=0.705 Sum_probs=1.0
Q ss_pred CccccccccccccCC-------------C--eeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPK-------------Q--TLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~-------------~--~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
++..|+||+++|.+. + .+..++ |+|.||.+||++||+.+.+||+||+++..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 457999999999753 2 223345 999999999999999999999999987654
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.33 E-value=5.9e-13 Score=94.68 Aligned_cols=50 Identities=34% Similarity=0.861 Sum_probs=43.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
..+.+|+||++.+.+ ..+.++ |||.||.+||..|++.+.+||+||+.+..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 356799999999874 346787 99999999999999999999999998754
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=5.4e-13 Score=95.79 Aligned_cols=50 Identities=24% Similarity=0.610 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
..++.+|+||++.+.+. ..++ |+|.||.+||..|++.+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 45678999999998653 5677 99999999999999999999999998854
No 20
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.8e-12 Score=92.94 Aligned_cols=53 Identities=26% Similarity=0.579 Sum_probs=45.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC--CcccccccccccCCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN--ASCPVCRKRLRFKSP 350 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~Cr~~l~~~~~ 350 (352)
....+|+||.+.+..++... .|+|.||..||++||+++ .+||+||++|..+.+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 34589999999998775443 499999999999999887 789999999987654
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=96.19 Aligned_cols=54 Identities=28% Similarity=0.672 Sum_probs=45.8
Q ss_pred CCCccccccccccccCCCe-eeeeCCCCCeechhhHHHHHhcC---CcccccccccccC
Q 044813 294 KPNDNTCPICLSRYKPKQT-LRTIPKCNHYFHAYCIDKWLRMN---ASCPVCRKRLRFK 348 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~Cr~~l~~~ 348 (352)
..+..+|+||++.|.+.+. .+.++ |||.||.+||..|++.+ .+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3467899999999988664 56777 99999999999999875 7899999987654
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=3.3e-12 Score=92.39 Aligned_cols=55 Identities=24% Similarity=0.509 Sum_probs=44.3
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC--CcccccccccccCCCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN--ASCPVCRKRLRFKSPF 351 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~Cr~~l~~~~~~ 351 (352)
..++..|+||++.|.+. ..++.|||.||..||..|++.+ .+||+||+.+...+.+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 34678999999999864 3465599999999999999865 6899999987665543
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.2e-12 Score=89.68 Aligned_cols=52 Identities=17% Similarity=0.455 Sum_probs=43.6
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHH-hcCCcccccccccccCCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL-RMNASCPVCRKRLRFKSP 350 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~Cr~~l~~~~~ 350 (352)
.++..|+||++.+.+.. .++ |||.||.+||.+|+ +.+.+||+||+.+..++.
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 45789999999998653 367 99999999999999 456789999999987654
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7.9e-12 Score=90.03 Aligned_cols=52 Identities=31% Similarity=0.646 Sum_probs=42.9
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHh---cCCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR---MNASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~Cr~~l~~~~ 349 (352)
..++..|+||++.+.+. ..++ |||.||.+||..|++ .+..||+||+.+..++
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34678999999998753 4567 999999999999996 4568999999987654
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=91.30 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=41.8
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
.....|+||++.+.+. .+++ |||.||..||..|++.+.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567999999998663 3577 9999999999999999999999999875
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.19 E-value=6.6e-12 Score=101.23 Aligned_cols=54 Identities=30% Similarity=0.798 Sum_probs=46.2
Q ss_pred CCccccccccccccCC----CeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 295 PNDNTCPICLSRYKPK----QTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
.++.+|+||++.|.+. +.++.++ |||.||.+||++|++.+.+||+||+.+..++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 4578999999999764 4557787 9999999999999999999999999886543
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.15 E-value=9.2e-12 Score=101.36 Aligned_cols=49 Identities=37% Similarity=0.971 Sum_probs=42.4
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
++..|+||++.|.++ .++| |||.||..||..|++.+.+||+||+++...
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 356899999998753 5678 999999999999999999999999988643
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=1.9e-11 Score=86.03 Aligned_cols=53 Identities=26% Similarity=0.631 Sum_probs=42.1
Q ss_pred Cccccccccc-cccCCCee-eeeCCCCCeechhhHHHHHhc-CCcccccccccccCC
Q 044813 296 NDNTCPICLS-RYKPKQTL-RTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRLRFKS 349 (352)
Q Consensus 296 ~~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l~~~~ 349 (352)
++..|+||++ .+.+.... ..++ |||.||.+||++|+.+ +..||+||+.+..++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3568999999 77766543 3466 9999999999999754 467999999987554
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=1.3e-11 Score=94.62 Aligned_cols=50 Identities=28% Similarity=0.691 Sum_probs=42.2
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC-CcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN-ASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~l~~~ 348 (352)
++..|+||++.|.+ .+..++ |||.||..||..|++.+ .+||+||+.+...
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 21 EVFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 46799999999875 343377 99999999999999877 6999999988654
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.14 E-value=3.5e-11 Score=87.83 Aligned_cols=52 Identities=25% Similarity=0.504 Sum_probs=43.7
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-CCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l~~~~ 349 (352)
..++..|+||++.|.+. ..++ |||.||..||.+|++. +.+||+||+++...+
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 34678999999998764 3567 9999999999999987 788999999886543
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=5e-11 Score=88.26 Aligned_cols=50 Identities=38% Similarity=0.763 Sum_probs=42.7
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc------CCcccccccccccC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM------NASCPVCRKRLRFK 348 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~l~~~ 348 (352)
.++..|+||++.+.+. ..++ |+|.||.+||..|++. +..||+||+.+..+
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4578999999998765 3677 9999999999999977 67899999988754
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=7.1e-11 Score=82.45 Aligned_cols=44 Identities=34% Similarity=0.705 Sum_probs=36.9
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHh---cCCccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR---MNASCPVC 341 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 341 (352)
..++..|+||++.+.+. ..++ |||.||.+||.+|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34678999999998864 4567 999999999999997 45689998
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.11 E-value=4e-11 Score=93.28 Aligned_cols=51 Identities=24% Similarity=0.578 Sum_probs=43.6
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
++..|+||++.+.+ .+.+++ |||.||..||..|++.+.+||+||+.+....
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKTR 64 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSSC
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccccC
Confidence 57899999999875 444447 9999999999999999999999999987653
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=6.5e-11 Score=87.67 Aligned_cols=51 Identities=31% Similarity=0.719 Sum_probs=43.0
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc------CCcccccccccccCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM------NASCPVCRKRLRFKS 349 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~l~~~~ 349 (352)
.++.+|+||++.+.+. ..++ |||.||.+||..|++. +..||+||+.+...+
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 4578999999998764 3567 9999999999999976 778999999887543
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.10 E-value=2.8e-11 Score=92.66 Aligned_cols=50 Identities=24% Similarity=0.630 Sum_probs=42.3
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
++..|+||++.+.+ .+..++ |||.||..||..|++.+.+||+||+.+...
T Consensus 21 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 46799999999886 343346 999999999999999989999999988653
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.10 E-value=1.5e-11 Score=90.02 Aligned_cols=51 Identities=31% Similarity=0.679 Sum_probs=42.6
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-------CCcccccccccccC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-------NASCPVCRKRLRFK 348 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~Cr~~l~~~ 348 (352)
..++.+|+||++.+.+. +.++ |||.||.+||..|++. ...||+||+.+..+
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 34678999999998764 3467 9999999999999976 56799999988654
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=3.1e-11 Score=97.26 Aligned_cols=54 Identities=30% Similarity=0.798 Sum_probs=45.7
Q ss_pred CCccccccccccccCC----CeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 295 PNDNTCPICLSRYKPK----QTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
.+...|+||++.+.+. .....++ |||.||..||++|++.+.+||+||+.+..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 3567899999998753 3446777 9999999999999999999999999987654
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.8e-11 Score=80.99 Aligned_cols=43 Identities=35% Similarity=0.912 Sum_probs=36.2
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHH---hcCCccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL---RMNASCPVC 341 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---~~~~~CP~C 341 (352)
.++..|+||++.+.+. +.++ |||.||.+||.+|+ +.+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4568999999999875 4577 99999999999995 456789998
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.04 E-value=1.8e-10 Score=86.77 Aligned_cols=50 Identities=26% Similarity=0.564 Sum_probs=41.1
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC--Ccccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN--ASCPVCRKRLR 346 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~Cr~~l~ 346 (352)
..++..|+||++.|.+. ..++.|||.||..||..|+..+ ..||+||+.+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45678999999999864 3455599999999999999653 58999999873
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.00 E-value=1.7e-10 Score=92.03 Aligned_cols=48 Identities=29% Similarity=0.542 Sum_probs=40.8
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC-ccccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA-SCPVCRKRLRF 347 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~l~~ 347 (352)
++..|+||++.|.+. ..++ |||.||..||..|++.+. +||+||+.+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 457899999998854 4567 999999999999998554 89999999865
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.97 E-value=2.2e-10 Score=96.04 Aligned_cols=49 Identities=47% Similarity=0.831 Sum_probs=41.6
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-CCccccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRLRF 347 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l~~ 347 (352)
++..|+||++.|.+ .+.+++ |||.||..||..|++. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45799999999886 444457 9999999999999987 7789999998854
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=2.2e-10 Score=89.60 Aligned_cols=50 Identities=32% Similarity=0.772 Sum_probs=41.5
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC---cccccccccccCC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA---SCPVCRKRLRFKS 349 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~Cr~~l~~~~ 349 (352)
+...|+||++.+.+. ..++ |||.||.+||..|++.+. +||+||+.+...+
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 356899999998764 3467 999999999999998654 8999999887543
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.95 E-value=1.3e-10 Score=91.55 Aligned_cols=50 Identities=26% Similarity=0.564 Sum_probs=41.9
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-CCcccccccccccCC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRLRFKS 349 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l~~~~ 349 (352)
++..|+||++.+.+. ..++ |||.||..||..|++. +.+||+||+.+...+
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 467899999998753 3477 9999999999999986 778999999886543
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.94 E-value=3.1e-10 Score=89.65 Aligned_cols=51 Identities=33% Similarity=0.611 Sum_probs=42.7
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC-cccccccccccC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA-SCPVCRKRLRFK 348 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~l~~~ 348 (352)
..++..|+||++.+.+. ..++ |||.||..||..|++.+. +||+||+.+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 34678999999998764 4567 999999999999997655 899999988654
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.94 E-value=3.9e-10 Score=78.92 Aligned_cols=50 Identities=28% Similarity=0.489 Sum_probs=40.9
Q ss_pred CCccccccccccccCCCeee-eeCCCCCe-echhhHHHHHhcCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLR-TIPKCNHY-FHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~-~lp~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
.++.+|.||++...+. +. .+| |||. |+.+|+..|.+.+..||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 4677999999986543 22 238 9999 8999999999988899999998753
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.93 E-value=7.9e-10 Score=80.42 Aligned_cols=55 Identities=22% Similarity=0.513 Sum_probs=42.1
Q ss_pred CCCccccccccccccCCCee-eeeCCCCCeechhhHHHHHh-cCCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTL-RTIPKCNHYFHAYCIDKWLR-MNASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~l~~~~ 349 (352)
..++.+|+||++.+...+.. ..++ |||.||..|+..|++ .+..||+||+.+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 34678999999998654332 2245 999999999999974 4568999999886543
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.91 E-value=6e-10 Score=91.78 Aligned_cols=49 Identities=24% Similarity=0.521 Sum_probs=41.6
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC-cccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA-SCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~l~~~ 348 (352)
++..|+||++.|.+. ..++ |||.||..||..|++.+. +||+||+.+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457999999998764 3477 999999999999998654 899999998765
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.90 E-value=2.2e-10 Score=90.04 Aligned_cols=49 Identities=29% Similarity=0.697 Sum_probs=41.3
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-CCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l~~ 347 (352)
.++..|+||++.+.+. ..++ |||.||..||..|++. +.+||+||+.+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4568999999998764 4567 9999999999999976 6789999998753
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=4.4e-10 Score=76.43 Aligned_cols=49 Identities=20% Similarity=0.520 Sum_probs=40.9
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKSP 350 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~~ 350 (352)
.++..|+||++.|.+. +.++ |||.||..||..| ...||+||+.+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 4577899999999865 5687 9999999999885 6689999999876543
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.86 E-value=1.9e-09 Score=79.93 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=44.9
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
..++..|+||++-|.+. .+++ |||.|+..||..|+..+.+||+||+.+...+
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CchheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 34678999999998875 4577 9999999999999998899999999887653
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.85 E-value=1.3e-09 Score=75.97 Aligned_cols=51 Identities=22% Similarity=0.496 Sum_probs=40.6
Q ss_pred CCccccccccccccCCCeeeeeCCCCCe-echhhHHHHHhcCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHY-FHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
..+.+|.||++...+. .+..+| |||+ |+.+|+..|.+.+..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 4567999999985542 122338 9998 9999999999888899999998753
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.84 E-value=1.9e-09 Score=82.40 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
..++..|+||++-|.++ .+++ |||.|+..||..|+..+.+||+||+++...+
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred CcHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 45678999999998875 4577 9999999999999998899999999987654
No 53
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.83 E-value=2.3e-09 Score=73.72 Aligned_cols=49 Identities=22% Similarity=0.568 Sum_probs=38.6
Q ss_pred CCccccccccccccCCCeeeeeCCCC--C---eechhhHHHHHhc--CCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCN--H---YFHAYCIDKWLRM--NASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~FH~~Ci~~Wl~~--~~~CP~Cr~~l~~ 347 (352)
++...|.||+++. ++.+ ++| |. | .||.+||++|+.. +.+||+||..+..
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4677999999983 3344 577 65 4 8999999999964 6789999998764
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.83 E-value=1.4e-09 Score=88.63 Aligned_cols=49 Identities=16% Similarity=0.520 Sum_probs=41.0
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC-ccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA-SCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~l~~ 347 (352)
.++..|+||++.+.+. ..++ |||.||..||..|++.+. +||+||+++..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4678999999998865 3467 999999999999997654 89999997643
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.81 E-value=2e-09 Score=100.83 Aligned_cols=50 Identities=26% Similarity=0.707 Sum_probs=42.6
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHh-cCCcccccccccccCC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR-MNASCPVCRKRLRFKS 349 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~l~~~~ 349 (352)
...+|+||++.+.+ ...+| |||.||..||..|++ .+.+||+||+.+....
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 34799999999855 46788 999999999999998 6889999999886654
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.81 E-value=3.7e-09 Score=80.46 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=44.3
Q ss_pred CCccccccccccccCCCeeeeeCCCC-CeechhhHHHHHhcCCcccccccccccCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCN-HYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
.++..|+||++-|.++ .+++ || |.|+..||..|+..+.+||+||+++...+
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 4678999999998865 3567 99 99999999999998899999999987654
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.77 E-value=2.2e-09 Score=97.72 Aligned_cols=55 Identities=24% Similarity=0.612 Sum_probs=42.5
Q ss_pred CCccccccccccccCCCee----eeeCCCCCeechhhHHHHHhcC-----------CcccccccccccCC
Q 044813 295 PNDNTCPICLSRYKPKQTL----RTIPKCNHYFHAYCIDKWLRMN-----------ASCPVCRKRLRFKS 349 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~----~~lp~C~H~FH~~Ci~~Wl~~~-----------~~CP~Cr~~l~~~~ 349 (352)
....+|+||++.+.+++.+ ...++|+|.||..||.+||++. .+||+||+++..+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 4578999999999874332 1223599999999999999752 46999999987653
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=2.3e-09 Score=84.52 Aligned_cols=48 Identities=21% Similarity=0.537 Sum_probs=39.9
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
++..|+||++.|.+. +.+.+ |||.||..||..|++ ..||+||+.+...
T Consensus 21 ~~~~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhCc--cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 467999999999764 33337 999999999999987 7899999988544
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.69 E-value=3.6e-09 Score=76.20 Aligned_cols=45 Identities=29% Similarity=0.795 Sum_probs=38.0
Q ss_pred CccccccccccccCCCeeeeeCCCCCe-echhhHHHHHhcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHY-FHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
++..|+||++.+.+ ...+| |||. |+.+|+..| ..||+||+.+...
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 46799999998765 35678 9999 999999999 7899999988643
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.58 E-value=1.6e-08 Score=76.37 Aligned_cols=49 Identities=27% Similarity=0.756 Sum_probs=41.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc--------CCcccc--cccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM--------NASCPV--CRKR 344 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~ 344 (352)
++..+|+||++++...+.+++.+ |||.|+.+|+..+++. ...||. |++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35678999999998877776677 9999999999999953 236999 9987
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.58 E-value=1.7e-08 Score=84.82 Aligned_cols=50 Identities=34% Similarity=0.628 Sum_probs=42.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC-CcccccccccccC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN-ASCPVCRKRLRFK 348 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~l~~~ 348 (352)
.++..|+||++.+.+. ..++ |||.|+..||..|++.+ .+||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4678999999998864 3477 99999999999999764 4899999988654
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=2.6e-08 Score=75.15 Aligned_cols=50 Identities=26% Similarity=0.542 Sum_probs=39.6
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC------Ccccc--cccc-ccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN------ASCPV--CRKR-LRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~--Cr~~-l~~ 347 (352)
.++..|+||++.|.++ ++ ++.|||.|+..||.+|+..+ .+||+ |++. +..
T Consensus 5 ~~~~~CPI~~~~~~dP--V~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP--VK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBCSSE--EE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchhcCC--EE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 4678999999998864 43 43499999999999999754 48999 9866 543
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=3.9e-08 Score=69.43 Aligned_cols=46 Identities=24% Similarity=0.631 Sum_probs=37.8
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCe-echhhHHHHHhcCCccccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHY-FHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
..++..|.||++...+ +..+| |+|. |+.+|+.. ...||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 4457899999998654 56788 9999 99999984 4789999998754
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=5.5e-08 Score=70.11 Aligned_cols=46 Identities=28% Similarity=0.782 Sum_probs=37.2
Q ss_pred CccccccccccccCCCeeeeeCCCCCe-echhhHHHHHhcCCcccccccccccCC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHY-FHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
++.+|+||++.+.+ ...+| |||. |+.+|+.. ...||+||+.+....
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence 45789999998765 35678 9999 99999964 478999999886543
No 65
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.40 E-value=1.5e-07 Score=85.20 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=43.2
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-CCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l~~~~ 349 (352)
..+...|+||++-|.++ .++| |||.|+..||..|+.. +.+||+||.++...+
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CCcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 45678999999998865 3577 9999999999999976 445999999986543
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.36 E-value=8.4e-08 Score=69.84 Aligned_cols=44 Identities=30% Similarity=0.659 Sum_probs=36.6
Q ss_pred CccccccccccccCCCeeeeeCCCCCe-echhhHHHHHhcCCccccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHY-FHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
++..|.||++.+.+ ...+| |||. |+.+|+..| ..||+||+.+..
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 45689999998654 46788 9999 999999987 499999998753
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.31 E-value=2.6e-07 Score=77.62 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=43.3
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC-CcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN-ASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~l~~~~ 349 (352)
..+...|+||++-|.++ | ++| |||.|...||..|+..+ .+||+||.++...+
T Consensus 103 ip~~f~CPI~~elm~DP--V-~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 103 IPDYLCGKISFELMREP--C-ITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CCGGGBCTTTCSBCSSE--E-ECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CcHhhcccCccccCCCC--e-ECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 46789999999998864 3 557 99999999999999764 57999999887653
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.30 E-value=2.7e-07 Score=63.54 Aligned_cols=50 Identities=10% Similarity=0.227 Sum_probs=41.7
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
...|+|+++-+.+. +...+ +||+|..+||.+|++++.+||+.++++..++
T Consensus 3 ~~~CpIs~~~m~dP--V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRP--VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSE--EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCC--EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 46899999998854 43325 9999999999999998889999999987765
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1e-06 Score=77.68 Aligned_cols=52 Identities=29% Similarity=0.615 Sum_probs=42.0
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC--Ccccc--cccccccCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN--ASCPV--CRKRLRFKS 349 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~--Cr~~l~~~~ 349 (352)
..+..|+||++.|.+ .|+.+. |||.|++.||.+|++.+ .+||+ ||+.+...+
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 456899999999875 455555 99999999999999764 46999 999876543
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.07 E-value=2.7e-06 Score=63.21 Aligned_cols=44 Identities=30% Similarity=0.561 Sum_probs=35.8
Q ss_pred cccccccccCCCeeeeeCCCCCeechhhHHHHHhc-CCcccccccccc
Q 044813 300 CPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-NASCPVCRKRLR 346 (352)
Q Consensus 300 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~l~ 346 (352)
|.+|--.+. ...|++| |+|+|+.+|+..|.++ .++||+|+.++.
T Consensus 4 C~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 4 CDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp CTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred cCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 677755543 5678999 9999999999999854 678999999874
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.06 E-value=1.1e-06 Score=81.68 Aligned_cols=44 Identities=27% Similarity=0.765 Sum_probs=37.6
Q ss_pred CccccccccccccCCCeeeeeCCCCCe-echhhHHHHHhcCCccccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHY-FHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45799999999765 45678 9999 999999998 789999998754
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.04 E-value=4.1e-06 Score=73.87 Aligned_cols=54 Identities=30% Similarity=0.583 Sum_probs=44.9
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC--cccccccccccCCCCC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA--SCPVCRKRLRFKSPFV 352 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~Cr~~l~~~~~~~ 352 (352)
....|+||.+-...+. ..+.|+|.||..|+..|++.+. .||.|+..|....|-|
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCCC
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Confidence 4679999999988763 3345999999999999997654 8999999998887743
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.18 E-value=0.017 Score=39.85 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=34.4
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC----ccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA----SCPVCRKRL 345 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~----~CP~Cr~~l 345 (352)
.....|.||.+. +.+.....|...||..|++..+.... .||.|+...
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345689999743 33445556999999999998886543 599997653
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.71 E-value=0.075 Score=39.64 Aligned_cols=35 Identities=11% Similarity=0.333 Sum_probs=26.2
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHH
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKW 331 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 331 (352)
++..|.||++++.......-+. |+|.|+..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3578999998754433333366 9999999999983
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.96 E-value=0.073 Score=38.76 Aligned_cols=50 Identities=26% Similarity=0.530 Sum_probs=39.2
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
....-|-.|+-+.+. ++....|-++..|+...|.....||+|+.+|..+-
T Consensus 26 ~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 345689999887542 23213799999999999999999999999987653
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.62 E-value=0.11 Score=35.06 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=33.1
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc----CCcccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM----NASCPVCRKR 344 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 344 (352)
...+..|.||.+. ..+.....|...||..|++.-+.. .=.||.|++.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999863 344444468899999999986533 2359999753
No 77
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=91.12 E-value=0.044 Score=36.90 Aligned_cols=52 Identities=23% Similarity=0.557 Sum_probs=36.5
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC----CcccccccccccCCCC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN----ASCPVCRKRLRFKSPF 351 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~l~~~~~~ 351 (352)
.+..|.||... + .+.....|...||..|+++=+... -.||.|+.....++..
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~~~ 59 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEEA 59 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTTTT
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchhcc
Confidence 46789999863 3 344444699999999999655432 2499998877665543
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.81 E-value=0.4 Score=34.17 Aligned_cols=36 Identities=25% Similarity=0.601 Sum_probs=24.4
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHH
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKW 331 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 331 (352)
...+..|.||- .+..++ +.-...|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~-~~t~~~-l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAES-LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSSC-CSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccccc-eeccccccccccHhhcccc
Confidence 34678999994 344333 2222258999999999996
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.74 E-value=0.14 Score=34.83 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=35.4
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHh-----cCCcccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR-----MNASCPVCRKR 344 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~Cr~~ 344 (352)
.+...|+||...+.+++..+..-.|..=||..|+..-.. .+-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999988865554444445888899999975432 24469999764
No 80
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.69 E-value=0.098 Score=34.61 Aligned_cols=46 Identities=24% Similarity=0.651 Sum_probs=32.1
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC----ccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA----SCPVCRK 343 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~----~CP~Cr~ 343 (352)
...+..|.||.+. + .+.....|...||..|+++-+...+ .||.|++
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999874 3 3444445999999999986554322 4999965
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=87.64 E-value=0.13 Score=35.30 Aligned_cols=46 Identities=26% Similarity=0.579 Sum_probs=32.4
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC----Cccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN----ASCPVCRK 343 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~ 343 (352)
...+..|.||.+. + .+.....|...||..|+..-+... =.||.|+.
T Consensus 5 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 3467899999863 3 344444689999999998655332 24999965
No 82
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.23 E-value=0.33 Score=35.27 Aligned_cols=52 Identities=23% Similarity=0.464 Sum_probs=36.0
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC----cccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA----SCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~----~CP~Cr~~l~~~~ 349 (352)
...+..|.+|... + .+.....|.-.||..|+++=+...+ .||.|+..-..++
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ke 77 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE 77 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCC
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccch
Confidence 3456799999864 3 3444445889999999977664422 4999987655444
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=86.68 E-value=0.18 Score=33.91 Aligned_cols=47 Identities=21% Similarity=0.430 Sum_probs=32.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC----Cccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN----ASCPVCRKRL 345 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~l 345 (352)
..+..|.||.+. ..+.....|...||..|+..-+... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999752 3344444588999999998655432 2499997643
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.81 E-value=0.38 Score=30.92 Aligned_cols=44 Identities=27% Similarity=0.680 Sum_probs=29.4
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC----Cccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN----ASCPVCRK 343 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~ 343 (352)
.|.||...-.. +.+..-..|...||..|++.=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58888765333 3444445699999999997644332 24999965
No 85
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.34 E-value=0.41 Score=33.26 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=34.9
Q ss_pred CCCccccccccccc-cCCCeeeeeCCCCCeechhhHHHHHh--cCCcccccccc
Q 044813 294 KPNDNTCPICLSRY-KPKQTLRTIPKCNHYFHAYCIDKWLR--MNASCPVCRKR 344 (352)
Q Consensus 294 ~~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~ 344 (352)
...+..|.||.+.- .+.+.+.....|.-.||..|+..-.. ..=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 45678999998753 34445555566999999999975321 12259999653
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.14 E-value=0.38 Score=36.64 Aligned_cols=45 Identities=29% Similarity=0.547 Sum_probs=31.4
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC----Cccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN----ASCPVCRK 343 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~ 343 (352)
.|.||.+.-.+.+.+.....|...||..|+++-|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 7899986533334454555699999999998765432 25999975
No 87
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=82.03 E-value=0.55 Score=34.13 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=35.4
Q ss_pred CCccccccccccc-cCCCeeeeeCCCCCeechhhHHHHHh--cCCccccccccccc
Q 044813 295 PNDNTCPICLSRY-KPKQTLRTIPKCNHYFHAYCIDKWLR--MNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~l~~ 347 (352)
.++..|.||...- .+.+.+.....|.-.||..|+..-+. ..=.||.|+.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3567999998753 23345555556888999999975331 12359999765443
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=80.69 E-value=0.55 Score=32.85 Aligned_cols=51 Identities=18% Similarity=0.462 Sum_probs=35.5
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc----CCcccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM----NASCPVCRKRLR 346 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~l~ 346 (352)
.+...|.||..... ++.+...-.|.--||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567999987643 4444455568999999999865532 335999987664
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=80.08 E-value=0.6 Score=35.38 Aligned_cols=39 Identities=18% Similarity=0.391 Sum_probs=27.2
Q ss_pred CCCccccccccccccCCCeeeeeCCCCCeechhhHHHHHh
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR 333 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 333 (352)
...+..|.||.+.=+.. .+..-..|...||..|++..+.
T Consensus 4 ~~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccc
Confidence 34678999998763222 2233345999999999988764
No 90
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.08 E-value=2.4 Score=29.83 Aligned_cols=48 Identities=21% Similarity=0.485 Sum_probs=32.2
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHh-----cCCcccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR-----MNASCPVCRKR 344 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~Cr~~ 344 (352)
+...| ||...+..+...+..-.|..=||..|+..-.. ..-.||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 44566 99888754444444445888899999954321 24469999864
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=76.00 E-value=2.3 Score=28.79 Aligned_cols=49 Identities=20% Similarity=0.417 Sum_probs=33.7
Q ss_pred CCccccccccccccCCCeeeeeC-CCCCeechhhHHHHHh----------cCCccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIP-KCNHYFHAYCIDKWLR----------MNASCPVCRK 343 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~----------~~~~CP~Cr~ 343 (352)
.....|.+|...+..++..+..- .|.--||.+|+.---. .+-.||.|++
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 35678999999988777666665 6999999999843221 1335888853
No 92
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.63 E-value=0.62 Score=34.13 Aligned_cols=49 Identities=20% Similarity=0.485 Sum_probs=33.3
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCC----cccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNA----SCPVCRKR 344 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~----~CP~Cr~~ 344 (352)
.++..|.||...-.. +.+.....|...||..|+.+=+...+ .||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345689999876432 34445556999999999985443322 49999764
No 93
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.43 E-value=0.35 Score=35.16 Aligned_cols=52 Identities=15% Similarity=0.393 Sum_probs=35.7
Q ss_pred CccccccccccccC-CCeeeeeCCCCCeechhhHHHHHhc--------CCccccccccccc
Q 044813 296 NDNTCPICLSRYKP-KQTLRTIPKCNHYFHAYCIDKWLRM--------NASCPVCRKRLRF 347 (352)
Q Consensus 296 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~Cr~~l~~ 347 (352)
.+..|.||...-.. ++.+...-.|...||..|++.=+.. .=.||.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 35689999876432 3455555669999999999875531 2359999765543
No 94
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=72.78 E-value=0.76 Score=34.55 Aligned_cols=49 Identities=22% Similarity=0.402 Sum_probs=34.1
Q ss_pred ccccccccccccCCCeeeeeC-CCCCeechhhHHHHH---h-------cCCccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIP-KCNHYFHAYCIDKWL---R-------MNASCPVCRKRL 345 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl---~-------~~~~CP~Cr~~l 345 (352)
...|.||...+.+.+..+..- .|.-=||.+|+..-- + .+-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999987665555553 588889999995321 0 234699997653
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.69 E-value=5 Score=30.25 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=25.2
Q ss_pred Cccccccccccc-----cCCCeeeeeCCCCCeechhhHHH
Q 044813 296 NDNTCPICLSRY-----KPKQTLRTIPKCNHYFHAYCIDK 330 (352)
Q Consensus 296 ~~~~C~ICl~~~-----~~~~~~~~lp~C~H~FH~~Ci~~ 330 (352)
....|.+|+..= ..++++..-..|+..||..|++.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 456899998763 23345555556999999999963
No 96
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=71.93 E-value=2.5 Score=28.51 Aligned_cols=53 Identities=19% Similarity=0.445 Sum_probs=36.1
Q ss_pred CCcccccccccccc-CCCeeeeeCCCCCeechhhHHHHHh-------cCCccccccccccc
Q 044813 295 PNDNTCPICLSRYK-PKQTLRTIPKCNHYFHAYCIDKWLR-------MNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~Cr~~l~~ 347 (352)
.++..|.||..... +.+.+.....|...||..|+..=+. ..=.||.|+.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 35679999997643 3345555556999999999986432 22359999765443
No 97
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.92 E-value=0.86 Score=32.15 Aligned_cols=45 Identities=24% Similarity=0.625 Sum_probs=30.1
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-----CCccccccc
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-----NASCPVCRK 343 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~Cr~ 343 (352)
..|.||...-. ++.+..--.|...||..|+++=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 47899986533 3344444469999999999854432 225999865
No 98
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=71.63 E-value=4.1 Score=30.59 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=30.0
Q ss_pred CCCccccccccccccCCCeeeeeC--CCCCeechhhHHHHHhcCC----ccccccccc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIP--KCNHYFHAYCIDKWLRMNA----SCPVCRKRL 345 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~~~----~CP~Cr~~l 345 (352)
...+..|.+|.+ +.++.... .|...||..|+. |...+ .||.|+-.+
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 346778999983 34444443 488999999998 54322 388765433
No 99
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=70.99 E-value=0.84 Score=31.56 Aligned_cols=44 Identities=32% Similarity=0.717 Sum_probs=28.7
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-----CCccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-----NASCPVCRK 343 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~Cr~ 343 (352)
.|.||...- +++.+..--.|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 567887542 23344444468999999999854432 225999975
No 100
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=69.73 E-value=1.9 Score=27.76 Aligned_cols=44 Identities=20% Similarity=0.428 Sum_probs=30.0
Q ss_pred ccccccccccCCCeeeeeC-CCCCeechhhHHHHH----hcCCcccccc
Q 044813 299 TCPICLSRYKPKQTLRTIP-KCNHYFHAYCIDKWL----RMNASCPVCR 342 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl----~~~~~CP~Cr 342 (352)
.|.||...+.+++..+..- .|.-=||..|+..-. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988876555555554 488889999986432 2456699885
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.04 E-value=3.6 Score=28.38 Aligned_cols=47 Identities=21% Similarity=0.559 Sum_probs=29.2
Q ss_pred CCccccccccccccCCCeeeeeCC--CC-CeechhhHHHHHhc----CCcccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPK--CN-HYFHAYCIDKWLRM----NASCPVCRKRLR 346 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~Cr~~l~ 346 (352)
.+...| ||-... .++ ++..-. |. .-||..||. |.. +-.||.|++.-.
T Consensus 14 ~~~~~C-~C~~~~-~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCS-CSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCC-CCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 345677 897753 243 333334 54 579999998 433 235999987544
No 102
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=68.78 E-value=4.1 Score=31.66 Aligned_cols=45 Identities=24% Similarity=0.486 Sum_probs=31.7
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHH------hc-----CCccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL------RM-----NASCPVCRK 343 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl------~~-----~~~CP~Cr~ 343 (352)
..+..|.||-+ +.++.....|-..||.+||+.-+ +. .=.|++|+-
T Consensus 55 g~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35678999975 35555555689999999999752 21 125999964
No 103
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=67.40 E-value=4.6 Score=30.62 Aligned_cols=34 Identities=21% Similarity=0.453 Sum_probs=24.3
Q ss_pred ccccccccccc------CCCeeeeeCCCCCeechhhHHHH
Q 044813 298 NTCPICLSRYK------PKQTLRTIPKCNHYFHAYCIDKW 331 (352)
Q Consensus 298 ~~C~ICl~~~~------~~~~~~~lp~C~H~FH~~Ci~~W 331 (352)
..|.||+..-. +++.+..-..|+..||..|++.+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987641 23455555569999999999865
No 104
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=66.06 E-value=1.8 Score=35.45 Aligned_cols=48 Identities=19% Similarity=0.526 Sum_probs=33.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHH-----hcCCccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL-----RMNASCPVCRK 343 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~Cr~ 343 (352)
.+...| ||.....++........|..-||..|+..-. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 356788 9988776555555555699999999995322 12446999976
No 105
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=65.68 E-value=1 Score=31.82 Aligned_cols=44 Identities=32% Similarity=0.693 Sum_probs=28.6
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC-----Cccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN-----ASCPVCRK 343 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-----~~CP~Cr~ 343 (352)
.|.||-..- +.+.+...-.|...||..|+++-|... =.||.|++
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 577776553 223444444689999999999765431 36999976
No 106
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=65.59 E-value=2.9 Score=30.82 Aligned_cols=46 Identities=20% Similarity=0.378 Sum_probs=30.5
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc---CCccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM---NASCPVCRK 343 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~ 343 (352)
+...| ||-.....+. ++..-.|.--||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 8877655544 4444469999999999763322 236999964
No 107
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=65.26 E-value=0.92 Score=34.61 Aligned_cols=50 Identities=24% Similarity=0.549 Sum_probs=33.5
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhcC----CcccccccccccCC
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMN----ASCPVCRKRLRFKS 349 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~l~~~~ 349 (352)
.|.||...-..+ .+..-..|...||..|+++=+... =.||.|+..+..+.
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k~ 113 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKA 113 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHTC
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchhhccc
Confidence 688887754333 344444599999999998644332 24999987765543
No 108
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=65.14 E-value=7.4 Score=30.76 Aligned_cols=45 Identities=24% Similarity=0.446 Sum_probs=32.3
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHh-----------cCCccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR-----------MNASCPVCRK 343 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----------~~~~CP~Cr~ 343 (352)
..+..|.||-+. .++.....|-..||..||+.=+. ..=.||+|+.
T Consensus 61 g~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456899999763 44544445999999999997652 1235999974
No 109
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.76 E-value=4.3 Score=29.52 Aligned_cols=47 Identities=21% Similarity=0.566 Sum_probs=28.9
Q ss_pred CCccccccccccccCCCeeeeeCC--CC-CeechhhHHHHHhc----CCcccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPK--CN-HYFHAYCIDKWLRM----NASCPVCRKRLR 346 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~Cr~~l~ 346 (352)
.+...| ||..... ++ ++..-. |. .-||..||. |.. +-.||.|+....
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 345667 9987642 33 333333 44 469999997 332 335999987543
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=64.35 E-value=7.5 Score=27.28 Aligned_cols=40 Identities=20% Similarity=0.412 Sum_probs=30.5
Q ss_pred CCCccccccccccccCCCeeeeeC-CCCCeechhhHHHHHhc
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIP-KCNHYFHAYCIDKWLRM 334 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~~ 334 (352)
......|.+|.+.+++-.-+. .| .=+|.|+..|-...+++
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHh
Confidence 345689999999998866554 22 23799999999999865
No 111
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.62 E-value=3.6 Score=28.84 Aligned_cols=50 Identities=16% Similarity=0.393 Sum_probs=32.0
Q ss_pred CCccccccccccccCCCeeeeeC--CCCCeechhhHHHHHh---------cCCcccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIP--KCNHYFHAYCIDKWLR---------MNASCPVCRKRLR 346 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~---------~~~~CP~Cr~~l~ 346 (352)
.....| ||-.....+..| ..- .|..=||..|+..--. .+-.||.|+..-.
T Consensus 14 ~~~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCCEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 345677 898774444333 333 4888999999964321 2456999977543
No 112
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=61.17 E-value=5.3 Score=41.54 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=43.3
Q ss_pred CCCccccccccccccCCCeeeeeCCCC-CeechhhHHHHHhcCCcccccccccccCC
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKCN-HYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
..++..|+|=++-+.++ .++| -| +.|-...|.+|+..+.+||+=|+++...+
T Consensus 888 iP~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CcHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 45788999999987764 3577 76 68999999999999999999999887543
No 113
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.39 E-value=9.3 Score=26.09 Aligned_cols=44 Identities=18% Similarity=0.493 Sum_probs=31.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
.....|+-|-+.+...+.+... =+..||.+| -+|-.|+++|...
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 3467899999988765554333 578899988 4677787776543
No 114
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=60.15 E-value=9 Score=27.18 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=35.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHH--------hcCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL--------RMNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl--------~~~~~CP~Cr~~l~~ 347 (352)
.+...|.+|...|..-..--....||++|+.+|....+ +....|-.|-..+..
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 35678999999997544333344699999999976542 112357777555443
No 115
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=59.46 E-value=3.6 Score=27.30 Aligned_cols=43 Identities=23% Similarity=0.625 Sum_probs=26.8
Q ss_pred CccccccccccccCCCeeeeeCC--CC-CeechhhHHHHHhc----CCccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPK--CN-HYFHAYCIDKWLRM----NASCPVCRK 343 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~Cr~ 343 (352)
+...| ||.... .+ .+...-. |. .-||..|+. |.. +-.||.|++
T Consensus 9 e~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 45566 897753 23 3433334 44 579999998 433 235999965
No 116
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=58.74 E-value=4 Score=27.01 Aligned_cols=43 Identities=26% Similarity=0.633 Sum_probs=27.5
Q ss_pred CccccccccccccCCCeeeeeCC--CC-CeechhhHHHHHhc----CCccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPK--CN-HYFHAYCIDKWLRM----NASCPVCRK 343 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~Cr~ 343 (352)
+...| ||-... .+ .+...-. |. .-||..|+. +.. +-.||.|++
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 45566 897753 23 3444444 55 589999998 433 235999965
No 117
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.54 E-value=6.3 Score=27.36 Aligned_cols=47 Identities=21% Similarity=0.500 Sum_probs=30.8
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHH---------hcCCccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL---------RMNASCPVCRKRL 345 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---------~~~~~CP~Cr~~l 345 (352)
...| ||...+..+..| ..-.|..=||..|+..-. ..+-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI-~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMI-CCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEE-ECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEE-EeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4566 898876543444 344588889999995321 2456799997643
No 118
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=58.52 E-value=8.7 Score=27.12 Aligned_cols=50 Identities=20% Similarity=0.455 Sum_probs=32.6
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHh------cCCccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR------MNASCPVCRKRL 345 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~Cr~~l 345 (352)
+...|.+|...|..-..--....||++|+..|....+. ....|-.|-..|
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLL 73 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHH
Confidence 45689999999975433333446999999999765431 112366665444
No 119
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=58.10 E-value=1.7 Score=27.06 Aligned_cols=7 Identities=14% Similarity=-0.093 Sum_probs=2.5
Q ss_pred hhHHHHH
Q 044813 230 TPGALFI 236 (352)
Q Consensus 230 ~~~~i~~ 236 (352)
++++.++
T Consensus 21 v~~~~ii 27 (44)
T 2ks1_B 21 LLLLLVV 27 (44)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 120
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=57.17 E-value=2 Score=29.35 Aligned_cols=46 Identities=22% Similarity=0.456 Sum_probs=27.7
Q ss_pred CccccccccccccCCCeeeeeC--CCCCeechhhHHHHHh--------cCCccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIP--KCNHYFHAYCIDKWLR--------MNASCPVCRK 343 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~--------~~~~CP~Cr~ 343 (352)
+...| ||-.....+..|. .- .|..=||..|+.---+ .+-.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~-CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQ-CEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEE-CSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEE-ECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34456 8976655554443 32 3777799999843110 1346999975
No 121
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.84 E-value=11 Score=26.28 Aligned_cols=42 Identities=24% Similarity=0.529 Sum_probs=30.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
.....|+.|-..+...+.+. . =+..||.+| -+|-.|++.|..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--V-NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--B-TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEEE--E-CCCeeCCCc--------CEEcCCCCCcCC
Confidence 34578999999887666554 2 578899988 467777766643
No 122
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=56.76 E-value=20 Score=25.68 Aligned_cols=51 Identities=20% Similarity=0.451 Sum_probs=36.0
Q ss_pred Ccccccccccccc---CCCeeeeeCCCCCeechhhHHHHHh-cCCcccccccccc
Q 044813 296 NDNTCPICLSRYK---PKQTLRTIPKCNHYFHAYCIDKWLR-MNASCPVCRKRLR 346 (352)
Q Consensus 296 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~l~ 346 (352)
....|.||=+++. +++.-...-.|+--.+..|.+-=.+ .++.||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4579999999964 3333233334666789999987654 4778999988775
No 123
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.17 E-value=8.4 Score=25.93 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=27.6
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
...|+-|-+.+..++.+. .. =+..||.+| -+|-.|+++|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-EY-GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-CS-TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE-EE-CccccCccc--------CeECCCCCcCCC
Confidence 457888888877654332 22 578888888 467777776654
No 124
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.75 E-value=1.9 Score=29.75 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=32.6
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHH----hcCCccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL----RMNASCPVCRKRL 345 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl----~~~~~CP~Cr~~l 345 (352)
....| ||-.....++..+..-.|..=||..|+..-- ..+-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 45668 7987765555444444588889999987532 2234699997643
No 125
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=55.56 E-value=0.95 Score=28.12 Aligned_cols=20 Identities=10% Similarity=0.105 Sum_probs=8.2
Q ss_pred eeehhhhhHHHHHhhheeeeE
Q 044813 224 IGIGFGTPGALFIIALGCYLC 244 (352)
Q Consensus 224 i~i~~~~~~~i~~~~l~~~~~ 244 (352)
++.+++++ +++++.+.+.++
T Consensus 15 a~~vVGvl-l~vi~~l~~~~~ 34 (44)
T 2jwa_A 15 ISAVVGIL-LVVVLGVVFGIL 34 (44)
T ss_dssp HHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhh
Confidence 44455533 333333333333
No 126
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.52 E-value=9.3 Score=27.54 Aligned_cols=50 Identities=16% Similarity=0.460 Sum_probs=33.0
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHh------cCCccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR------MNASCPVCRKRL 345 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~Cr~~l 345 (352)
+...|.+|...|..-..--....||++|+..|...+.. ....|-.|-..+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 45689999999875433233446999999999876541 123466665444
No 127
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.48 E-value=10 Score=26.90 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=26.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHH
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKW 331 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 331 (352)
.+...|.+|...|..-..--....||.+|+..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 3457899999998654322233469999999997543
No 128
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.47 E-value=8.8 Score=25.82 Aligned_cols=41 Identities=17% Similarity=0.408 Sum_probs=27.9
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
...|+.|-+.+...+.+... =+..||.+| -+|-.|++.|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 45788888888766544333 577888888 457777776644
No 129
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.46 E-value=11 Score=26.13 Aligned_cols=41 Identities=24% Similarity=0.510 Sum_probs=30.7
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
.....|+-|-+.+..++.+.. =+..||.+| -+|-.|++.|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 346789999998877665542 478899988 56888887765
No 130
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=55.46 E-value=6.5 Score=26.94 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=19.8
Q ss_pred cccccccccccCCCeeeeeCCCCCeech-hhHHHHHhcCCccccccc
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHA-YCIDKWLRMNASCPVCRK 343 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~-~Ci~~Wl~~~~~CP~Cr~ 343 (352)
..|..|-..+..+.- ... =+.+|+. .|..+- -...|-.|..
T Consensus 28 F~C~~C~~~L~~~~~-~~~--~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 28 LKCEKCGKTLTSGGH-AEH--EGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp CBCTTTCCBCCTTTE-EEE--TTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCccccCccCCCCce-ECc--CCeEeeCHHHHHHH--hCccCCCcCC
Confidence 566666666554421 111 3555665 365442 2334555543
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=55.45 E-value=10 Score=26.10 Aligned_cols=33 Identities=15% Similarity=0.366 Sum_probs=24.4
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHH
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDK 330 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 330 (352)
..|.+|...|..-..--....||++|+.+|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999875433233446999999999754
No 132
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.22 E-value=9.1 Score=26.17 Aligned_cols=41 Identities=22% Similarity=0.521 Sum_probs=30.8
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
....|+.|-+.+..++.+. . -+..||.+| -+|..|++.|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--S-LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--E-TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEE--E-CCeEeeCCC--------CCCCCCCCccCC
Confidence 3568999999888766554 2 578899988 468888877754
No 133
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=54.60 E-value=10 Score=27.29 Aligned_cols=51 Identities=16% Similarity=0.329 Sum_probs=33.6
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHH-------hcCCccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL-------RMNASCPVCRKRL 345 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-------~~~~~CP~Cr~~l 345 (352)
.+...|.+|...|..-..--....||++|+..|....+ +....|-.|-..+
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 35568999999987554333344699999999976532 1223477775544
No 134
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=54.02 E-value=4.3 Score=27.71 Aligned_cols=47 Identities=19% Similarity=0.509 Sum_probs=31.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHh---cCCccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR---MNASCPVCRK 343 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~Cr~ 343 (352)
.+...| ||-.... ++..+..-.|..=||..|+..--. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 455678 9987655 443444445888899999965321 2345999965
No 135
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.00 E-value=14 Score=24.72 Aligned_cols=39 Identities=23% Similarity=0.480 Sum_probs=21.6
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRL 345 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l 345 (352)
...|+.|-+.+...+.+. .. =+..||.+| -+|-.|++.|
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L 43 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGV-VA-LDRVFHVGC--------FVCSTCRAQL 43 (72)
T ss_dssp CCCCSSSCSCCCSSSCCE-EC-SSSEECTTT--------CBCSSSCCBC
T ss_pred CCCCccCCCccCCCceEE-EE-CCCeEcccC--------CcccccCCcC
Confidence 346777766665433222 11 456777766 3566666655
No 136
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=53.01 E-value=5.7 Score=26.54 Aligned_cols=46 Identities=22% Similarity=0.522 Sum_probs=27.5
Q ss_pred CccccccccccccCCCeeeeeCC--CC-CeechhhHHHHH--hcCCcccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPK--CN-HYFHAYCIDKWL--RMNASCPVCRKR 344 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl--~~~~~CP~Cr~~ 344 (352)
+...| ||-... .+ .++..-. |. .-||..||..-- ..+-.||.|++.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 45566 897752 34 3444444 44 789999997311 113359999753
No 137
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.57 E-value=12 Score=25.84 Aligned_cols=42 Identities=14% Similarity=0.368 Sum_probs=30.0
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
...|+.|-+.+..++.+... =+..||.+| -+|-.|++.|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCCC
Confidence 46899999988876654322 578999988 4677887776543
No 138
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=51.75 E-value=11 Score=29.06 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=26.2
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHH
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKW 331 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 331 (352)
+...|.+|...|..-..--....||++|+..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 456899999998754322334469999999996544
No 139
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.57 E-value=4.4 Score=34.73 Aligned_cols=47 Identities=30% Similarity=0.644 Sum_probs=27.5
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhc-----CCcccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM-----NASCPVCRKR 344 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~Cr~~ 344 (352)
+..|.+|-..-. ++.+...-.|...||..|+++=|.. .=.||.|+.+
T Consensus 174 ~c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 347999976422 3344445569999999999954432 1259999753
No 140
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=51.47 E-value=3.3 Score=31.80 Aligned_cols=48 Identities=17% Similarity=0.417 Sum_probs=30.9
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRK 343 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 343 (352)
....|..|-..|..-..--....||.+|+..|..........|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 456899999998653322234469999999997766555566877754
No 141
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.09 E-value=16 Score=24.44 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=27.8
Q ss_pred CccccccccccccC--CCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 296 NDNTCPICLSRYKP--KQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 296 ~~~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
....|+-|-+.+.. .+.+ +.. -+..||.+| -+|-.|+++|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~-~~a-~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKY-ISF-EERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSC-EEC-SSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCCcCCCccccCCCCcce-EEE-CCcccCccc--------CEeccCCCcCC
Confidence 34678999888775 2233 222 678899888 46777877765
No 142
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=50.42 E-value=3.1 Score=31.33 Aligned_cols=45 Identities=18% Similarity=0.551 Sum_probs=29.5
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhc----CCcccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM----NASCPVCRKR 344 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 344 (352)
.|.||-..-.+ +.+.....|...||..|+++=+.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 67788765333 334444459999999999865433 2249988653
No 143
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.65 E-value=19 Score=24.85 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=27.1
Q ss_pred CCccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
.....|+-|-+.+. ++.++ .-+..||.+| -+|-.|+++|..
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred cCCCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCC
Confidence 34568888888877 33332 2577888887 467777776653
No 144
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=48.52 E-value=17 Score=24.18 Aligned_cols=43 Identities=19% Similarity=0.548 Sum_probs=31.9
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
....|+-|-..+..++.+... =+..||.+|+ +|-.|++.|...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 456899999998877655333 5788999984 688888777544
No 145
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.80 E-value=27 Score=24.67 Aligned_cols=41 Identities=27% Similarity=0.621 Sum_probs=28.0
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
....|+-|-+.+...+.++ . -+..||.+| -+|-.|++.|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCC
Confidence 3568888888887666543 2 678888888 356667666544
No 146
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=45.99 E-value=8.7 Score=35.41 Aligned_cols=50 Identities=28% Similarity=0.556 Sum_probs=32.3
Q ss_pred ccccccccccccCCCeeeeeCCCCCe--echhhHHHHHhcC--CcccccccccccCC
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHY--FHAYCIDKWLRMN--ASCPVCRKRLRFKS 349 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~Ci~~Wl~~~--~~CP~Cr~~l~~~~ 349 (352)
...|+|=+..+. ..+|-.. |.|+ |-.+=+-+..++. -.||+|.+.+...+
T Consensus 249 SL~CPlS~~ri~--~PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred eecCCCcccccc--ccCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 367888766654 4577776 9998 5444333333333 35999998876554
No 147
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=45.68 E-value=3 Score=27.48 Aligned_cols=50 Identities=30% Similarity=0.541 Sum_probs=32.9
Q ss_pred CCCcccccccccc-ccCCCeeeeeCCCCCeechhhHHHHH-hcCC---cccccccc
Q 044813 294 KPNDNTCPICLSR-YKPKQTLRTIPKCNHYFHAYCIDKWL-RMNA---SCPVCRKR 344 (352)
Q Consensus 294 ~~~~~~C~ICl~~-~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~---~CP~Cr~~ 344 (352)
..+...|.||+.- |.++-.-.-.- |.-.|+..|-..|- +.+. .|-+||++
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccc-cCCeeecccCCEeeecCCeEEEEehhhhhc
Confidence 4567899999975 77665444444 77778888876664 2222 28888763
No 148
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=45.51 E-value=9.1 Score=35.16 Aligned_cols=50 Identities=28% Similarity=0.566 Sum_probs=33.0
Q ss_pred ccccccccccccCCCeeeeeCCCCCe--echhhHHHHHhcCC--cccccccccccCC
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHY--FHAYCIDKWLRMNA--SCPVCRKRLRFKS 349 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~Ci~~Wl~~~~--~CP~Cr~~l~~~~ 349 (352)
...|+|=+..++ ..+|-.. |.|+ |-.+=+-+..+++. .||+|.+.+...+
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeeCCCccceec--cCCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 357888766654 4577776 9998 55544444444333 5999999886654
No 149
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.21 E-value=19 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.374 Sum_probs=27.2
Q ss_pred ccccccccccccC--CCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 297 DNTCPICLSRYKP--KQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 297 ~~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
...|+.|-+.+.. .++.. .. -+..||.+| -+|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFI-CF-QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeE-EE-CCcccCccc--------CChhhCCCcCC
Confidence 4579999888775 33332 22 678899988 46777777664
No 150
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=44.46 E-value=9 Score=26.58 Aligned_cols=42 Identities=29% Similarity=0.520 Sum_probs=27.7
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
....|+.|-+.+..++.++ . -+..||.+| -+|-.|+++|...
T Consensus 6 ~~~~C~~C~~~I~~~~~~~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQ--C-DGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp --CBCSSSCCBCSSTTEEE--E-TTEEEESSS--------EECSSSCCEECSS
T ss_pred CCCcCcCcCccccCceeEE--e-CCccccccc--------CccCCCCCCCCCC
Confidence 3467888988887666443 2 577888887 4577777766543
No 151
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.65 E-value=16 Score=28.57 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCcccccccccccc-CCCeeeeeCCCCCeechhhHHHHHhc-C-C--ccccccc
Q 044813 295 PNDNTCPICLSRYK-PKQTLRTIPKCNHYFHAYCIDKWLRM-N-A--SCPVCRK 343 (352)
Q Consensus 295 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~-~--~CP~Cr~ 343 (352)
..+..|++|...|. ....-+....|.|.++..|=..-... + . .|-+|++
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 46789999999994 33334555569999999995432110 1 1 3777765
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.04 E-value=21 Score=30.44 Aligned_cols=50 Identities=18% Similarity=0.444 Sum_probs=33.3
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHh--------cCCcccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR--------MNASCPVCRKRLR 346 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~--------~~~~CP~Cr~~l~ 346 (352)
+..|.+|...|..-..-.....||++|+..|-..... ....|-.|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 4699999999875433334447999999999765431 1234777755443
No 153
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=42.55 E-value=4.4 Score=30.19 Aligned_cols=27 Identities=22% Similarity=0.607 Sum_probs=17.4
Q ss_pred CCCCeechhhHHHHHhcCCcccccccccccCC
Q 044813 318 KCNHYFHAYCIDKWLRMNASCPVCRKRLRFKS 349 (352)
Q Consensus 318 ~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~~ 349 (352)
.||+.|. .=+.....||.|+.....+.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 4999991 11133467999998765543
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.62 E-value=15 Score=31.09 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=25.9
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHH
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKW 331 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 331 (352)
+..|.+|...|.--..--....||++|+..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47999999998754333344479999999997654
No 155
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=39.79 E-value=18 Score=23.71 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=27.4
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
...|+.|-+.+. ++.+ .. =+..||.+| -+|-.|+++|..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCC
Confidence 467899988877 4432 22 678899888 468888777654
No 156
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=39.39 E-value=11 Score=28.64 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=14.2
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHH
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWL 332 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 332 (352)
..|..|-..+..++..... =+..|+..|..+.+
T Consensus 37 F~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCcEEee--CCEEEcHHHhHHHh
Confidence 4455555444333322211 34455555554443
No 157
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.03 E-value=33 Score=23.42 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=27.4
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
....|+-|-+.+.. +. +.. -+..||.+|+ +|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VF--VKL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SC--EEC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cE--EEE-CcceeCcCcC--------eeCCCCCCCC
Confidence 45789999988775 32 232 6789999984 5777776654
No 158
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.99 E-value=20 Score=24.67 Aligned_cols=38 Identities=16% Similarity=0.389 Sum_probs=22.6
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
..|+.|-+.+. ++.+ . .-+..||.+| -+|-.|++.|..
T Consensus 16 ~~C~~C~~~I~-~~~~--~-a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--V-AGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCCB--C-CTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceEE--E-ECCceecccc--------CCccCCCCccCC
Confidence 46777777766 2222 2 2567777776 456667666643
No 159
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=36.76 E-value=14 Score=24.33 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=29.9
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccc
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVC 341 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 341 (352)
..|--|...+.+.. ....++|++.|+.+|=.---+.=..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999986433 24566799999999933322344569988
No 160
>1brz_A Brazzein; sweet protein, cysteine-stabilized alpha-beta; HET: PCA; NMR {Pentadiplandra brazzeana} SCOP: g.3.7.5 PDB: 2brz_A* 2kgq_A 2kyq_A
Probab=36.33 E-value=7.4 Score=24.81 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=14.3
Q ss_pred cCCCceeeecCCCcceEEecC
Q 044813 191 YRGEVCKFTNDDTSLVVGCSN 211 (352)
Q Consensus 191 ~sgg~Cg~~~~~~~~~f~C~c 211 (352)
++||+|.++..+ .+.|+|
T Consensus 32 AkgG~C~~~e~~---~vkClC 49 (54)
T 1brz_A 32 ARSGECFYDEKR---NLQCIC 49 (54)
T ss_dssp CSEEEEECCTTC---CCEEEE
T ss_pred CcCceeeecCCC---CeEEec
Confidence 468999999876 578876
No 161
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.64 E-value=58 Score=22.71 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=29.0
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
....|+-|-+.+.. +.+ .. -+..||.+| -+|-.|++.|...
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--KA-RDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--ES-SSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cEE--EE-CCceECccC--------CEecCCCCCCCCC
Confidence 45689999988775 322 22 678999988 4677887777543
No 162
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.72 E-value=20 Score=24.72 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=25.4
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
..|+.|-+.+. ++.++ . -+..||.+| -+|-.|+++|..
T Consensus 16 ~~C~~C~~~I~-~~~v~--a-~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--A-LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--E-TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE--E-CCceeCccC--------CccccCCCCCCC
Confidence 48999988877 33332 2 678899988 356666665543
No 163
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.54 E-value=30 Score=22.87 Aligned_cols=39 Identities=21% Similarity=0.496 Sum_probs=24.6
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
...|+-|-+.+.. +.+. . -+..||.+| -+|-.|++.|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK--A-MNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE--E-TTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEE--E-CcccccccC--------CEeCCCCCcCCC
Confidence 4578888777663 3222 2 567788877 357777766654
No 164
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=33.48 E-value=42 Score=26.92 Aligned_cols=35 Identities=20% Similarity=0.482 Sum_probs=26.8
Q ss_pred CCccccccccccccCCCeeeeeC--CCCCeechhhHHHHHh
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIP--KCNHYFHAYCIDKWLR 333 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~ 333 (352)
..+..|.||-+ |.++.... .|...|+.+||+.++-
T Consensus 77 G~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 77 GYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcC
Confidence 45678999975 45555554 5889999999999984
No 165
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=33.32 E-value=12 Score=25.85 Aligned_cols=46 Identities=22% Similarity=0.494 Sum_probs=30.0
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHh-----cCCcccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR-----MNASCPVCRKR 344 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~Cr~~ 344 (352)
.--||-..+..++..+..-.|.-=||..|+..--. ..-.||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 33488877654444444445888899999964321 23469999764
No 166
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=33.18 E-value=5 Score=23.37 Aligned_cols=16 Identities=19% Similarity=0.594 Sum_probs=10.9
Q ss_pred CccccccccccccCCC
Q 044813 296 NDNTCPICLSRYKPKQ 311 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~ 311 (352)
+...|+||+.++...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4577888887776544
No 167
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=32.21 E-value=38 Score=22.79 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=26.2
Q ss_pred CCCccccccccccccCCCeeeeeCCC-CCeechhhHHHHH
Q 044813 294 KPNDNTCPICLSRYKPKQTLRTIPKC-NHYFHAYCIDKWL 332 (352)
Q Consensus 294 ~~~~~~C~ICl~~~~~~~~~~~lp~C-~H~FH~~Ci~~Wl 332 (352)
.++..-|.||.++ ..+|-+. | +-+|+..|..+--
T Consensus 5 ~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAG-CDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHHc
Confidence 3466789999988 4477776 9 8899999977653
No 168
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.13 E-value=36 Score=23.90 Aligned_cols=40 Identities=15% Similarity=0.403 Sum_probs=28.2
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
....|+-|-+.+. ++.+. . -+..||.+| -+|-.|++.|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 4568999988874 33332 2 678999988 468888777653
No 169
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.83 E-value=45 Score=21.95 Aligned_cols=38 Identities=24% Similarity=0.528 Sum_probs=24.7
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
...|+-|-+.+.. +.+ .. -+..||.+| -+|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCC
Confidence 4578888877763 332 22 577888877 45777777664
No 170
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=31.64 E-value=23 Score=26.86 Aligned_cols=38 Identities=21% Similarity=0.580 Sum_probs=24.1
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
.|+.|-+.+...+.+... =++.||.+| -+|-.|++.|.
T Consensus 68 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 105 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRV--KDKVYHLEC--------FKCAACQKHFC 105 (131)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEEEGGG--------CBCTTTCCBCC
T ss_pred ChhhcCCccCccceeEee--CCceECccC--------cccCCCCCCCC
Confidence 677777776654433322 567788777 46777776664
No 171
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=31.49 E-value=38 Score=22.87 Aligned_cols=41 Identities=20% Similarity=0.469 Sum_probs=29.0
Q ss_pred ccccccccccccC---CCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 297 DNTCPICLSRYKP---KQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 297 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
...|+-|-..+.. .+.+... =+..||.+| -+|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT--------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEE--CcceeCccc--------CEehhcCCCCCC
Confidence 4689999988874 2333222 578999988 568888887753
No 172
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.26 E-value=45 Score=23.81 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=25.9
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccccC
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRFK 348 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~~ 348 (352)
..|..|-..+.... .... =+.+|+..|..+ .-.+.|..|.+.|...
T Consensus 34 F~C~~C~~~L~~~~-~~~~--~g~~yC~~cy~~--~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 34 FRCAKCLHPLANET-FVAK--DNKILCNKCTTR--EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp CCCSSSCCCTTSSC-CEEE--TTEEECHHHHTT--CCCCBCSSSCCBCCSS
T ss_pred CcccccCCCCCcCe-eECc--CCEEEChhHhhh--hcCCccccCCCccccC
Confidence 56777766664322 1111 456676666533 1245688888877643
No 173
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=31.08 E-value=11 Score=20.89 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=8.5
Q ss_pred CCcccccccccc
Q 044813 335 NASCPVCRKRLR 346 (352)
Q Consensus 335 ~~~CP~Cr~~l~ 346 (352)
+..||+|+..++
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 346888887664
No 174
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=30.81 E-value=12 Score=23.84 Aligned_cols=41 Identities=17% Similarity=0.518 Sum_probs=25.9
Q ss_pred cccccccCCCeeeeeCCCCCeechhhHHHHHh---cCCccccccc
Q 044813 302 ICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR---MNASCPVCRK 343 (352)
Q Consensus 302 ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~Cr~ 343 (352)
||-.... ++..+....|..=||..|+..--. .+-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 333444445888899999964322 2346999975
No 175
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.60 E-value=34 Score=27.27 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=31.7
Q ss_pred CCccccccccccccCC-CeeeeeCCCCCeechhhHHHHHhcCC--ccccccc
Q 044813 295 PNDNTCPICLSRYKPK-QTLRTIPKCNHYFHAYCIDKWLRMNA--SCPVCRK 343 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~Cr~ 343 (352)
..+..|++|...|.-- ..-+....|.|.++..|= .|+.... .|-+|++
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 4678999999986422 223344469999999996 3443322 2777755
No 176
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=30.60 E-value=22 Score=19.80 Aligned_cols=28 Identities=18% Similarity=0.540 Sum_probs=20.1
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhH
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCI 328 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci 328 (352)
..|+.|-...-..|.+. .=|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 47999988866555443 25789999884
No 177
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=30.36 E-value=13 Score=26.86 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=26.7
Q ss_pred CCccccccccccccCCCeeeeeCCCC---CeechhhHHHHH--hcCCcccc-ccc
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIPKCN---HYFHAYCIDKWL--RMNASCPV-CRK 343 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp~C~---H~FH~~Ci~~Wl--~~~~~CP~-Cr~ 343 (352)
.+...| ||-... .++ ++..-.|. .-||..||..-- ..+-.||. |++
T Consensus 24 ~~~~yC-iC~~~~-~g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVS-YGP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCC-SSS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCC-CCC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 345667 997642 244 33333444 579999996211 12335999 975
No 178
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.26 E-value=33 Score=23.51 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=26.0
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
...|+.|-..+..++.+... =+..||.+| -+|-.|+++|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTT--------SBCTTTCCBCS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccC--------CeecCCCCccC
Confidence 35788888887743333221 477888888 45777777664
No 179
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.18 E-value=43 Score=22.50 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=12.4
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhh
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYC 327 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~C 327 (352)
..|+-|-..+.. +.+ . .-+..||.+|
T Consensus 6 ~~C~~C~~~I~~-~~v--~-a~~~~wH~~C 31 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL--E-AGEKHYHPSC 31 (73)
T ss_dssp CSCSSSCCCCSS-CCB--C-CSSCCBCTTT
T ss_pred CCcccCCCEecC-eeE--E-eCCCCCCCCc
Confidence 355666555443 211 1 2455666655
No 180
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.14 E-value=15 Score=26.86 Aligned_cols=42 Identities=24% Similarity=0.640 Sum_probs=26.2
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
+..|++|-.+++..........|+-. ++....||-|.++|..
T Consensus 32 ~~~CP~Cq~eL~~~g~~~hC~~C~~~---------f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHARCRSCGEF---------IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEETTEEEETTTCCE---------EEEEEECTTTCSBCEE
T ss_pred cccCccCCCcceecCCEEECccccch---------hhccccCcchhhHHHH
Confidence 37899999887643322223335443 3446679999888753
No 181
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=28.98 E-value=39 Score=22.05 Aligned_cols=39 Identities=28% Similarity=0.510 Sum_probs=26.8
Q ss_pred cccccccccccCCCeeeeeCCCCCeec--hhhHHHHHhcCCcccccccccc
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFH--AYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH--~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
..|+-|-+.+..++..... -+..|| .+| -+|-.|+++|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcCC
Confidence 4688888888764333222 578899 888 46777877764
No 182
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.82 E-value=29 Score=28.39 Aligned_cols=38 Identities=24% Similarity=0.611 Sum_probs=25.9
Q ss_pred ccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 299 TCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 299 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
.|+.|-..+...+.+... -++.||.+| -+|-.|++.|.
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~C--------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKC--------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGG--------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCC--------CeECCCCCCCC
Confidence 688888877665544322 578888888 46777766664
No 183
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=28.02 E-value=12 Score=34.96 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=0.0
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHh-------cCCcccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLR-------MNASCPVCRKRLR 346 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~Cr~~l~ 346 (352)
+...|.+|-..|..-..-.....||++||..|-..++. ....|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 45789999998864322223336999999999977652 1345888866554
No 184
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=27.06 E-value=55 Score=24.71 Aligned_cols=40 Identities=23% Similarity=0.580 Sum_probs=30.3
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
....|+-|-..+.....+. . -+..||.+| -+|-.|++.|.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~--a-~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLY--A-MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEE--E-TTEEEETTT--------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEE--e-CCcEEcccc--------cCcCcCCCccc
Confidence 3578999999887543333 2 688999999 57889988885
No 185
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.67 E-value=69 Score=20.93 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=23.0
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
...|+-|-+.+.. +.+. . =+..||.+| -+|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGIT--Y-QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEE--E-TTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEE--E-CccccccCc--------CEECCCCCCCC
Confidence 4567777777653 3332 2 467777777 35666766654
No 186
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.37 E-value=58 Score=22.04 Aligned_cols=38 Identities=18% Similarity=0.447 Sum_probs=24.8
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
...|+.|-+.+.. +.+ .. =+..||.+| -+|-.|+++|.
T Consensus 15 ~~~C~~C~~~I~~-~~v--~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQ-GGV--TY-RDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCS-CCE--ES-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCcCCCCCCEecC-cEE--EE-CCchhhhhh--------CCcccCCCcCC
Confidence 3578888877754 322 22 577888887 45777777664
No 187
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=25.25 E-value=46 Score=26.57 Aligned_cols=36 Identities=6% Similarity=0.067 Sum_probs=20.5
Q ss_pred cccccccccccCCCeeeeeCCCCCeechhhHHHHHhc
Q 044813 298 NTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRM 334 (352)
Q Consensus 298 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~ 334 (352)
..|..|-..+..++...... =+.+|+..|..+.+..
T Consensus 94 F~C~~C~~~L~~g~~f~~~~-~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 94 FACVVCKRQLATGDEFYLME-DSRLVCKADYETAKQG 129 (169)
T ss_dssp CBCTTTCCBCCTTCEEEECT-TSCEEEHHHHHHHHHC
T ss_pred CcCCCCCCCCCCCCceEEcc-CCeEECHHHHHHHhhc
Confidence 56666766665555432232 4566777776665544
No 188
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=25.09 E-value=7.2 Score=25.24 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=11.0
Q ss_pred CccceEEeeehhhhhHHHHHhhhe
Q 044813 217 VKYDAIIIGIGFGTPGALFIIALG 240 (352)
Q Consensus 217 ~~~~i~~i~i~~~~~~~i~~~~l~ 240 (352)
...|++++++..|++++.+++.+.
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~L 30 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILAL 30 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 444555444444444444444333
No 189
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.60 E-value=8.6 Score=24.91 Aligned_cols=22 Identities=9% Similarity=-0.004 Sum_probs=9.3
Q ss_pred ccceEEeeehhhhhHHHHHhhh
Q 044813 218 KYDAIIIGIGFGTPGALFIIAL 239 (352)
Q Consensus 218 ~~~i~~i~i~~~~~~~i~~~~l 239 (352)
..|++++++..|++++.+++.+
T Consensus 11 p~wiIi~svl~GLllL~li~~~ 32 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLA 32 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 190
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.29 E-value=68 Score=29.63 Aligned_cols=34 Identities=26% Similarity=0.574 Sum_probs=26.7
Q ss_pred CCccccccccccccCCCeeeeeC--CCCCeechhhHHHHH
Q 044813 295 PNDNTCPICLSRYKPKQTLRTIP--KCNHYFHAYCIDKWL 332 (352)
Q Consensus 295 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl 332 (352)
..+..|.||-+ +.++.... .|...|+.+||+.++
T Consensus 91 G~~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 91 GYQSYCSICCS----GETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSBCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHT
T ss_pred CCcccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhc
Confidence 35779999975 34555554 699999999999998
No 191
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.16 E-value=66 Score=21.87 Aligned_cols=39 Identities=23% Similarity=0.542 Sum_probs=26.3
Q ss_pred CccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCcccccccccc
Q 044813 296 NDNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLR 346 (352)
Q Consensus 296 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~ 346 (352)
....|+-|-..+.. ..+ .. -+..||.+| -+|..|++.|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILD-RIL--RA-MGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCS-CCE--EE-TTEEECTTT--------CBCSSSCCBCT
T ss_pred CCCccccCCCeecc-eeE--EE-CCccccHHh--------cCcccCCCccC
Confidence 34678888888763 222 22 578888888 46778877664
No 192
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.14 E-value=18 Score=24.62 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=9.2
Q ss_pred HHHhcCCcccccccccc
Q 044813 330 KWLRMNASCPVCRKRLR 346 (352)
Q Consensus 330 ~Wl~~~~~CP~Cr~~l~ 346 (352)
.||..--.||.|+.++.
T Consensus 3 ~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 3 TKLLDILACPICKGPLK 19 (69)
T ss_dssp CCGGGTCCCTTTCCCCE
T ss_pred hHHHhheeCCCCCCcCe
Confidence 34444455666666554
No 193
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.29 E-value=16 Score=25.64 Aligned_cols=19 Identities=21% Similarity=0.656 Sum_probs=15.3
Q ss_pred CCCCeechhhHHHHHhcCCcc
Q 044813 318 KCNHYFHAYCIDKWLRMNASC 338 (352)
Q Consensus 318 ~C~H~FH~~Ci~~Wl~~~~~C 338 (352)
.|+|.|+..|-..|-. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 5999999999999843 445
No 194
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.06 E-value=63 Score=21.85 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=25.9
Q ss_pred ccccccccccccCCCeeeeeCCCCCeechhhHHHHHhcCCccccccccccc
Q 044813 297 DNTCPICLSRYKPKQTLRTIPKCNHYFHAYCIDKWLRMNASCPVCRKRLRF 347 (352)
Q Consensus 297 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~l~~ 347 (352)
...|+.|-..+.. +.++ . =+..||.+| -+|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~~-~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLS--A-MDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS-SCEE--E-TTEEECTTT--------CBCSSSCCBSCS
T ss_pred CCccccCCCeecc-eeEE--E-CCCeEecCc--------CChhhCCCCCCC
Confidence 3578888887764 3332 2 567888887 467777777654
No 195
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=20.23 E-value=47 Score=21.33 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=15.7
Q ss_pred CcccccC----CCceee----ecCCCcceEEecCCC
Q 044813 186 CAPCEYR----GEVCKF----TNDDTSLVVGCSNSG 213 (352)
Q Consensus 186 C~~C~~s----gg~Cg~----~~~~~~~~f~C~c~~ 213 (352)
|.+|+.+ ||.|.. +.. ..|.|.|+.
T Consensus 8 ~~eC~s~pC~NgGtC~~~~~~d~~---~~y~C~C~~ 40 (55)
T 3u7u_G 8 CAEKEKTFCVNGGECFMVKDLSNP---SRYLCKCPN 40 (55)
T ss_dssp CCSTTTTTSCTTCEEEEECCC--C---CCEEEEECT
T ss_pred CCCCcCCCCCCCCCcCCCCccCCC---CCEeEeCCC
Confidence 5556554 899963 332 369999954
Done!