BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044814
(577 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/583 (70%), Positives = 474/583 (81%), Gaps = 16/583 (2%)
Query: 3 MAVLRNSLAS--ISAQIEPR------FRFRTMNIIASKNRNPNQNIQQKVIPHCQVIPGA 54
MAVL +SL++ I + P + T +++ N P +P
Sbjct: 1 MAVLSSSLSAFFIKKLVHPSKPTSIFSHYSTHPHLSAMNFPPRSKPGSAASATTSEVPDL 60
Query: 55 DSREINHIVEETFGRYTSK-ALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVY 113
S E+ IVE+TF RY+S KRNG GVAIVWFRNDLRVLDNEAL+KAW SS+ VLPVY
Sbjct: 61 PSNEMGKIVEQTFQRYSSSDEAKRNGSGVAIVWFRNDLRVLDNEALVKAWASSQAVLPVY 120
Query: 114 CVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAK 173
CVDPR TT++FGFPKTGALRAQFLIECLADL++NLMNRGLNLLI+HGKPEEI+PSLAK
Sbjct: 121 CVDPRLFGTTHYFGFPKTGALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAK 180
Query: 174 SFGAHAVYAQKETCSEELNVERLVRKNLQQVVL----SSQSNDKSTNHPQLKLIWGTTMY 229
+F AH VYA KETCSEELNVERLVR L+QVVL ++ S+NHP+L+LIWG+TMY
Sbjct: 181 TFEAHTVYAHKETCSEELNVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMY 240
Query: 230 HLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELH 289
H++D+PF SSLPDVYT FRKS+E+KCT+R CIR P+ GPPP++ DWGSVP I+QL LH
Sbjct: 241 HIEDLPFSTSSLPDVYTQFRKSVESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLH 300
Query: 290 SPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSIS 349
KVS+GMRF+GGE+AAL RVNEYFWKKDLLKVYK TRN MLG DYSTKFSPWLASGS+S
Sbjct: 301 EEKVSRGMRFIGGEAAALSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLS 360
Query: 350 PRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ 409
PR+IY+EVK YE+ER ANDSTYWVLFEL+WRDYFRF+S+KY NSLFHLGGPRK+E +WSQ
Sbjct: 361 PRFIYQEVKRYEKERQANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEARWSQ 420
Query: 410 DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
DQ +FE+WRDGCTGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMGIDWRMGAEWFET
Sbjct: 421 DQTMFEAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 480
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKER 529
CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQA+ YD EGEYVA+WLP+L+ALP ++
Sbjct: 481 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDK 540
Query: 530 RNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFKGKH 572
RNFPG SYI QIV LK GNI + +++ + + RR F+GK
Sbjct: 541 RNFPGKSYINQIVPLKFGNITSSGDKDSA---SARRTAFRGKQ 580
>gi|225429814|ref|XP_002280771.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Vitis vinifera]
Length = 549
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/527 (75%), Positives = 455/527 (86%), Gaps = 8/527 (1%)
Query: 51 IPGADSREINHIVEETFGRYTSK-ALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMV 109
+P S E+ IVE+TF RY+S KRNG GVAIVWFRNDLRVLDNEAL+KAW SS+ V
Sbjct: 20 VPDLPSNEMGKIVEQTFQRYSSSDEAKRNGSGVAIVWFRNDLRVLDNEALVKAWASSQAV 79
Query: 110 LPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIP 169
LPVYCVDPR TT++FGFPKTGALRAQFLIECLADL++NLMNRGLNLLI+HGKPEEI+P
Sbjct: 80 LPVYCVDPRLFGTTHYFGFPKTGALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILP 139
Query: 170 SLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVL----SSQSNDKSTNHPQLKLIWG 225
SLAK+F AH VYA KETCSEELNVERLVR L+QVVL ++ S+NHP+L+LIWG
Sbjct: 140 SLAKTFEAHTVYAHKETCSEELNVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWG 199
Query: 226 TTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQ 285
+TMYH++D+PF SSLPDVYT FRKS+E+KCT+R CIR P+ GPPP++ DWGSVP I+Q
Sbjct: 200 STMYHIEDLPFSTSSLPDVYTQFRKSVESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQ 259
Query: 286 LELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLAS 345
L LH KVS+GMRF+GGE+AAL RVNEYFWKKDLLKVYK TRN MLG DYSTKFSPWLAS
Sbjct: 260 LGLHEEKVSRGMRFIGGEAAALSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLAS 319
Query: 346 GSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY 405
GS+SPR+IY+EVK YE+ER ANDSTYWVLFEL+WRDYFRF+S+KY NSLFHLGGPRK+E
Sbjct: 320 GSLSPRFIYQEVKRYEKERQANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEA 379
Query: 406 KWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAE 465
+WSQDQ +FE+WRDGCTGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMGIDWRMGAE
Sbjct: 380 RWSQDQTMFEAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAE 439
Query: 466 WFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
WFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQA+ YD EGEYVA+WLP+L+AL
Sbjct: 440 WFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPEGEYVAFWLPELQAL 499
Query: 526 PKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFKGKH 572
P ++RNFPG SYI QIV LK GNI + +++ + + RR F+GK
Sbjct: 500 PNDKRNFPGKSYINQIVPLKFGNITSSGDKDSA---SARRTAFRGKQ 543
>gi|356507809|ref|XP_003522656.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Glycine max]
Length = 549
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/527 (74%), Positives = 443/527 (84%), Gaps = 8/527 (1%)
Query: 49 QVIPGADSR-EINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSE 107
Q +P D+ +++ + + TF RYTS K +GKG AIVWFRNDLRVLDNEAL KAW SSE
Sbjct: 22 QQVPEQDANNDLDRVADNTFRRYTSNVTKGSGKGTAIVWFRNDLRVLDNEALYKAWLSSE 81
Query: 108 MVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEI 167
VLPVYCVDPR TTYHFGFPKTGALRAQFL+ECLADLRKNLM RGLNLL++HGKPEEI
Sbjct: 82 TVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLECLADLRKNLMKRGLNLLVQHGKPEEI 141
Query: 168 IPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDK---STNHPQLKLIW 224
+PSLAKSF AH VYAQKETCSEELNVERLV + L+QVV S + + S N P+L+L+W
Sbjct: 142 LPSLAKSFQAHTVYAQKETCSEELNVERLVMRGLKQVVTSPEESSGITVSNNIPKLQLVW 201
Query: 225 GTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIE 284
GTTMYHLDD+PFD +SLPDVYT FRK +E KCT+R CI++P+S GPPP+V DWG +P +E
Sbjct: 202 GTTMYHLDDLPFDATSLPDVYTQFRKLVETKCTIRSCIKLPASLGPPPTVQDWGCLPSLE 261
Query: 285 QLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLA 344
QL L S V+KGM+FVGGE+AAL RV EYFWKKDLL+VYKETRN MLGPDYSTKFSPWLA
Sbjct: 262 QLGLSSQSVNKGMKFVGGETAALSRVYEYFWKKDLLRVYKETRNGMLGPDYSTKFSPWLA 321
Query: 345 SGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE 404
SGS+SPR+IYEEVK YE +R+AN STYWVLFEL+WRDYFRF+S+KYGNSLFHLGGPRK++
Sbjct: 322 SGSLSPRFIYEEVKRYENDRLANSSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPRKVQ 381
Query: 405 YKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGA 464
WSQD+ LFESWRDGCTGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMGIDWRMGA
Sbjct: 382 RNWSQDKNLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGA 441
Query: 465 EWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKA 524
EWFETCLLDYDPCSNYGNWTYG+GVGNDPREDRYFSIPKQAQ YD EGEYVAYWLPQL+
Sbjct: 442 EWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRK 501
Query: 525 LPKERRNFPGG-SYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFKG 570
+PKE+RNFPG YI QIV LK G + N RR N +G
Sbjct: 502 IPKEKRNFPGNLIYIPQIVPLKFGTTS---GHNKDKFFGARRTNDRG 545
>gi|224121408|ref|XP_002330820.1| predicted protein [Populus trichocarpa]
gi|222872622|gb|EEF09753.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/549 (70%), Positives = 444/549 (80%), Gaps = 27/549 (4%)
Query: 48 CQVIPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSE 107
CQ++PG D+ E +I+++TF RYTSK +KRNGKG AIVWFRNDLRVLDNE L KAW +SE
Sbjct: 2 CQLVPGLDTNEKEYILDQTFERYTSKMVKRNGKGAAIVWFRNDLRVLDNEVLFKAWVNSE 61
Query: 108 MVLPVYCVDPRHSQ-TTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEE 166
VLPVYCVDPR Q +T +FGFPKTG LR QF++ECL DL+KNLM RGLNLLIRHGKPEE
Sbjct: 62 SVLPVYCVDPRLFQASTCYFGFPKTGGLRGQFIVECLVDLKKNLMKRGLNLLIRHGKPEE 121
Query: 167 IIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVL----SSQSNDKSTNHPQLKL 222
IIP+LAK F +H VYAQKETCSEE+NVE+LV K L++V L ++ S N P L+L
Sbjct: 122 IIPALAKDFASHTVYAQKETCSEEVNVEKLVSKALRRVHLPHSTGRSTSQGSANSPTLQL 181
Query: 223 IWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPL 282
+WG TMYHLDD+PF +S+PDVYT FRKS+EA+C++R C +I S GP P V DWG VP
Sbjct: 182 VWGGTMYHLDDLPFSTNSIPDVYTQFRKSVEARCSIRSCAKISMSLGPAPRVEDWGCVPS 241
Query: 283 IEQLELHSPK--------VSKGMRFVGGESAALGRVNEYFWKK------------DLLKV 322
IEQL L + VSKGMRF+GGE+AAL RV EYFWKK D LK+
Sbjct: 242 IEQLGLQPQEAGFMFYLHVSKGMRFLGGETAALSRVYEYFWKKASGNCFLLSLCLDFLKI 301
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YKETRN MLGPDYSTKFSPWLASGS+SPR+IYEEVK YE+ R+ANDSTYWVLFEL+WRDY
Sbjct: 302 YKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEEVKRYEKGRLANDSTYWVLFELIWRDY 361
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
FRFIS KYGNS+FH+GGPR +E +WSQDQ+LF+SWR+GCTGYPLIDANMKELS TGFMSN
Sbjct: 362 FRFISFKYGNSIFHIGGPRNVERRWSQDQRLFDSWRNGCTGYPLIDANMKELSATGFMSN 421
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
RGRQI CSFLVRDMGIDWRMGAEWFET LLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP
Sbjct: 422 RGRQIVCSFLVRDMGIDWRMGAEWFETFLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 481
Query: 503 KQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRT 562
KQAQ YD EGEYVAYWLPQL+ LPKE+RNFPG Y+EQIV LK GN N +R Q+ +
Sbjct: 482 KQAQTYDPEGEYVAYWLPQLQELPKEKRNFPGKLYMEQIVPLKFGNPNGHRGQDRA--SA 539
Query: 563 GRRNNFKGK 571
R+ N+ G+
Sbjct: 540 ARKTNYGGR 548
>gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera]
Length = 584
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/527 (72%), Positives = 438/527 (83%), Gaps = 29/527 (5%)
Query: 51 IPGADSREINHIVEETFGRYTSK-ALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMV 109
+P S E+ IVE+TF RY+S KRNG GVAIVWFRNDLRVLDNEAL+KAW SS+ V
Sbjct: 76 VPDLPSNEMGKIVEQTFQRYSSSDEAKRNGSGVAIVWFRNDLRVLDNEALVKAWASSQAV 135
Query: 110 LPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIP 169
LPVYCVDPR TT++FGFPKTGALRAQFLIECLADL++NLMNRGLNLLI+HGKPEEI+P
Sbjct: 136 LPVYCVDPRLFGTTHYFGFPKTGALRAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILP 195
Query: 170 SLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVL----SSQSNDKSTNHPQLKLIWG 225
SLAK+F AH VYA KETCSEELNVERLVR L+QVVL ++ S+NHP+L+LIWG
Sbjct: 196 SLAKTFEAHTVYAHKETCSEELNVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWG 255
Query: 226 TTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQ 285
+TMYH++D+PF SSLPDVYT FRKS+E+KCT+R CIR P+ GPPP++ DWGSV
Sbjct: 256 STMYHIEDLPFSTSSLPDVYTQFRKSVESKCTIRICIRTPTLLGPPPNIEDWGSV----- 310
Query: 286 LELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLAS 345
S+GMRF+GGE+AAL R DLLKVYK TRN MLG DYSTKFSPWLAS
Sbjct: 311 --------SRGMRFIGGEAAALSR--------DLLKVYKATRNGMLGADYSTKFSPWLAS 354
Query: 346 GSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY 405
GS+SPR+IY+EVK YE+ER ANDSTYWVLFEL+WRDYFRF+S+KY NSLFHLGGPRK+E
Sbjct: 355 GSLSPRFIYQEVKRYEKERQANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEA 414
Query: 406 KWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAE 465
+WSQDQ +FE+WRDGCTGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMGIDWRMGAE
Sbjct: 415 RWSQDQTMFEAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAE 474
Query: 466 WFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
WFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQA+ YD EGEYVA+WLP+L+AL
Sbjct: 475 WFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPEGEYVAFWLPELQAL 534
Query: 526 PKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFKGKH 572
P ++RNFPG SYI QIV LK GNI + +++ + + RR F+GK
Sbjct: 535 PNDKRNFPGKSYINQIVPLKFGNITSSGDKDSA---SARRTAFRGKQ 578
>gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis]
gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis]
Length = 576
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/528 (71%), Positives = 437/528 (82%), Gaps = 10/528 (1%)
Query: 49 QVIPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEM 108
QV S EI I ++TF Y+SK+LKR GKG+ IVWFRNDLR+LDNE+LL+AW SS+
Sbjct: 51 QVPADLHSDEIKRIADQTFQNYSSKSLKRKGKGICIVWFRNDLRILDNESLLQAWLSSDS 110
Query: 109 VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEII 168
+LPVYCVDPR TT+HF FPKTGALRAQFLIECLADL+ NLM RGLNL IRHGKPE+I+
Sbjct: 111 LLPVYCVDPRLFHTTHHFAFPKTGALRAQFLIECLADLKNNLMKRGLNLFIRHGKPEDIL 170
Query: 169 PSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTM 228
PSLA++F AH VYAQKETCSEEL VERLV K LQ+V L S DK T+ P+L+L+WG+TM
Sbjct: 171 PSLARAFSAHTVYAQKETCSEELIVERLVSKALQRVNLPP-SPDKFTSQPKLQLVWGSTM 229
Query: 229 YHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLEL 288
YH+DD+PF+ +++PDVYT F KC +RGC++IP + P P V DWG VP ++QL L
Sbjct: 230 YHIDDLPFNANNIPDVYTQF-----PKCVIRGCLKIPVTLAPSPPVDDWGCVPSLDQLGL 284
Query: 289 HSPKVS--KGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASG 346
K KGMRF+GGE+AAL RV EYFWKKDLLK+YKETRN MLGPDYSTKFSPWLASG
Sbjct: 285 QPQKARFIKGMRFLGGETAALSRVYEYFWKKDLLKIYKETRNGMLGPDYSTKFSPWLASG 344
Query: 347 SISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK 406
S+SPR+IYE+VK YE ER ANDSTYWVLFEL+WRDYFRF+S+KYGNSLFHLGG RK+E
Sbjct: 345 SLSPRFIYEDVKRYENERQANDSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGVRKVERS 404
Query: 407 WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEW 466
WSQDQKLFESW+DGCTGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMG+DWRMGAEW
Sbjct: 405 WSQDQKLFESWKDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGVDWRMGAEW 464
Query: 467 FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQ YD EGEYVAYWLPQL+ L
Sbjct: 465 FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQIYDPEGEYVAYWLPQLQKLE 524
Query: 527 KERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFKGKHAQ 574
K+RR+FPG SYIEQIV LK+GN ++ Q+ R++N+ + +
Sbjct: 525 KDRRHFPGKSYIEQIVPLKYGNPKKHEGQDRGF--APRQSNYNARQTK 570
>gi|449505505|ref|XP_004162492.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/534 (72%), Positives = 445/534 (83%), Gaps = 13/534 (2%)
Query: 48 CQVIPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSE 107
CQV PG +S E++ +VE+ F RY+S + + GKGVAIVWFRNDLRVLDNEAL KAW SSE
Sbjct: 18 CQV-PGLESEEMDRVVEQMFRRYSSSSGFKRGKGVAIVWFRNDLRVLDNEALNKAWISSE 76
Query: 108 MVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEI 167
VLPVYCVDPR +T +FGFPKTGALRAQF++ECLADL++NL RGLNLLI+HGKPEEI
Sbjct: 77 AVLPVYCVDPRLFGSTCYFGFPKTGALRAQFIVECLADLKRNLTKRGLNLLIQHGKPEEI 136
Query: 168 IPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKST------NHPQLK 221
+PSLAK+ GAH V+AQ ETCSEEL VE++V K L+ VVLS S ++ P +
Sbjct: 137 LPSLAKALGAHTVFAQMETCSEELYVEKMVSKGLKTVVLSPTSEKSASAKSSAARSPTFQ 196
Query: 222 LIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVP 281
L+WGTTMYH+DD+PFD +SLPDVYT FRKS+EAKC +R CIR+P+ GP PS+ DWGSVP
Sbjct: 197 LVWGTTMYHIDDLPFDTNSLPDVYTQFRKSVEAKCKIRDCIRLPALLGPAPSIDDWGSVP 256
Query: 282 LIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSP 341
+++L L P V KGMRF+GGESAAL R+ EYFWKKDLL++YKETRN MLGPDYSTKFSP
Sbjct: 257 SLDKLGLQPPSVVKGMRFIGGESAALSRIYEYFWKKDLLRIYKETRNGMLGPDYSTKFSP 316
Query: 342 WLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR 401
WLASGSISPR I+EEV+ YERER AN STYWVLFEL+WRDYFRF+S+KYGNSLFHLGGPR
Sbjct: 317 WLASGSISPRLIHEEVRRYEREREANQSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPR 376
Query: 402 KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWR 461
K+E KWSQD+ LFESWRDG TGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMGIDWR
Sbjct: 377 KVESKWSQDKNLFESWRDGRTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWR 436
Query: 462 MGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQ 521
MGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQ YD EGEYVAYWLPQ
Sbjct: 437 MGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQ 496
Query: 522 LKALPKERRNFPGGS-YIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFKGKHAQ 574
L+ LPK++R+FPG YIEQ+V LK N + ++Q+ + RR F GK A+
Sbjct: 497 LRMLPKDKRHFPGKMLYIEQVVPLKFVNAGRPQSQDST-----RRKTFGGKQAK 545
>gi|449437082|ref|XP_004136321.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/534 (72%), Positives = 445/534 (83%), Gaps = 13/534 (2%)
Query: 48 CQVIPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSE 107
CQV PG +S E++ +VE+ F RY+S + + GKGVAIVWFRNDLRVLDNEAL KAW SSE
Sbjct: 18 CQV-PGLESEEMDRVVEQMFRRYSSSSGFKRGKGVAIVWFRNDLRVLDNEALNKAWISSE 76
Query: 108 MVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEI 167
VLPVYCVDPR +T +FGFPKTGALRAQF++ECLADL++NL RGLNLLI+HGKPEEI
Sbjct: 77 AVLPVYCVDPRLFGSTCYFGFPKTGALRAQFIVECLADLKRNLTKRGLNLLIQHGKPEEI 136
Query: 168 IPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKST------NHPQLK 221
+PSLAK+ GAH V+AQ ETCSEEL VE++V K L+ VVLS S ++ P +
Sbjct: 137 LPSLAKALGAHTVFAQMETCSEELYVEKMVSKGLKTVVLSPTSEKSASAKSSAARSPTFQ 196
Query: 222 LIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVP 281
L+WGTTMYH+DD+PFD +SLPDVYT FRKS+EAKC +R CIR+P+ GP PS+ DWGSVP
Sbjct: 197 LVWGTTMYHIDDLPFDTNSLPDVYTQFRKSVEAKCKIRDCIRLPALLGPAPSIDDWGSVP 256
Query: 282 LIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSP 341
+++L L P V KGMRF+GGESAAL R+ EYFWKKDLL++YKETRN MLGPDYSTKFSP
Sbjct: 257 SLDKLGLQPPSVVKGMRFIGGESAALSRIYEYFWKKDLLRIYKETRNGMLGPDYSTKFSP 316
Query: 342 WLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR 401
WLASGSISPR I+EEV+ YERER AN STYWVLFEL+WRDYFRF+S+KYGNSLFHLGGPR
Sbjct: 317 WLASGSISPRLIHEEVRRYEREREANQSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPR 376
Query: 402 KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWR 461
K+E KWSQD+ LFESWRDG TGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMGIDWR
Sbjct: 377 KVESKWSQDKNLFESWRDGRTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWR 436
Query: 462 MGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQ 521
MGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQ YD EGEYVAYWLPQ
Sbjct: 437 MGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQ 496
Query: 522 LKALPKERRNFPGGS-YIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFKGKHAQ 574
L+ LPK++R+FPG YIEQ+V LK N + ++Q+ + RR F GK A+
Sbjct: 497 LRMLPKDKRHFPGKMLYIEQVVPLKFVNAGRPQSQDST-----RRKTFGGKQAK 545
>gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
Length = 577
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/526 (69%), Positives = 428/526 (81%), Gaps = 10/526 (1%)
Query: 51 IPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVL 110
+P + E + +E F RYTS +L+R G GVA+VWFRNDLRVLDNEALL+AW +SE VL
Sbjct: 48 VPSLSAGEACAVADEAFQRYTSPSLRRGGAGVAVVWFRNDLRVLDNEALLRAWSASEAVL 107
Query: 111 PVYCVDPR-HSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIP 169
PVYCVDPR + +T++FGFPKTGALRAQFLIECL DL++ L +GL+LL+RHGKPEEI+P
Sbjct: 108 PVYCVDPRVFAGSTHYFGFPKTGALRAQFLIECLGDLKQILRKKGLDLLVRHGKPEEILP 167
Query: 170 SLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLS--SQSNDKSTNHPQLKLIWGTT 227
S+AK+ AH +YA KETCSEEL VERLV K L+QV ++ S K +P+L+LIWG T
Sbjct: 168 SIAKAVSAHTIYAHKETCSEELLVERLVSKGLEQVQIAQGGASVPKKPLNPRLQLIWGAT 227
Query: 228 MYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPS-----VVDWGSVPL 282
MYH+DD+PF S+LPDVYT FRK++E+K +VR C ++P S GP PS + WG++P
Sbjct: 228 MYHIDDLPFPVSNLPDVYTQFRKAVESKSSVRNCTKLPPSLGPLPSSSIDEIGGWGAIPT 287
Query: 283 IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPW 342
+E L L K KGM F+GGE+AALGRV+EYFWKKD LK YK TRN MLGPDYSTKFSPW
Sbjct: 288 LESLGLSVTKSEKGMHFIGGENAALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPW 347
Query: 343 LASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRK 402
LASGS+SPRYI EEVK YE++RVANDSTYWVLFEL+WRDYFRF+S KYGN++FHLGGPRK
Sbjct: 348 LASGSLSPRYICEEVKRYEKQRVANDSTYWVLFELIWRDYFRFLSAKYGNTIFHLGGPRK 407
Query: 403 LEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRM 462
+ KWSQDQ LFESWRDG TGYPLIDANM+ELS TGFMSNRGRQI CSFLVRDMGIDWRM
Sbjct: 408 VVSKWSQDQALFESWRDGRTGYPLIDANMRELSATGFMSNRGRQIVCSFLVRDMGIDWRM 467
Query: 463 GAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL 522
GAEWFETCLLDYDP SNYGNWTYGAGVGNDPREDRYFSIPKQA++YD EGEYVAYWLP+L
Sbjct: 468 GAEWFETCLLDYDPASNYGNWTYGAGVGNDPREDRYFSIPKQAKSYDPEGEYVAYWLPEL 527
Query: 523 KALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNF 568
++L KERRNFPG SYI QIV LK NQ ++Q R R NN
Sbjct: 528 RSLAKERRNFPGASYIRQIVQLKFDGGNQKKDQQ--FNRQRRPNNM 571
>gi|413955020|gb|AFW87669.1| hypothetical protein ZEAMMB73_818499 [Zea mays]
Length = 578
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/526 (69%), Positives = 430/526 (81%), Gaps = 11/526 (2%)
Query: 51 IPGADSREINHIVEETFGRYTSKAL-KRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMV 109
+P + E + +E F RYTS +L +R G GVA+VWFRNDLRV+DNEALL+AW +SE V
Sbjct: 48 VPSLGADEACAVADEAFRRYTSPSLLRRGGVGVAVVWFRNDLRVIDNEALLRAWAASEAV 107
Query: 110 LPVYCVDPR-HSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEII 168
LPVYCVDPR + +T++FGFPK GALRAQFLIECL DL+++L +GL+LL+RHGKPEEI+
Sbjct: 108 LPVYCVDPRVFAGSTHYFGFPKKGALRAQFLIECLGDLKQSLRKKGLDLLVRHGKPEEIL 167
Query: 169 PSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLS--SQSNDKSTNHPQLKLIWGT 226
PS+AK+ AH +YA KETCSEEL VERLV K L+QV ++ S K +P+L+LIWG
Sbjct: 168 PSIAKAVSAHTIYAHKETCSEELLVERLVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGA 227
Query: 227 TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPS-----VVDWGSVP 281
TMYH+DD+PF SSLPDVYT FRK++E+KC+VR C ++P+S GPPPS + WG+VP
Sbjct: 228 TMYHIDDLPFPVSSLPDVYTQFRKAVESKCSVRNCAKLPTSLGPPPSSSIDEIGGWGTVP 287
Query: 282 LIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSP 341
+E L K KGM F+GGESAALGRV+EYFWKKD LK YK TRN MLGPDYSTKFSP
Sbjct: 288 TLESLGPSVTKSEKGMHFIGGESAALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSP 347
Query: 342 WLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR 401
WLASGS+SPRYI EEVK YE++RVANDSTYWVLFEL+WRDYFRF+S KYGN++FHLGGPR
Sbjct: 348 WLASGSLSPRYICEEVKRYEKQRVANDSTYWVLFELIWRDYFRFLSAKYGNAIFHLGGPR 407
Query: 402 KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWR 461
K+ KWSQDQ LFESWRDG TGYPLIDANM+ELS TG+MSNRGRQI CSFLVRDMG+DWR
Sbjct: 408 KVVSKWSQDQALFESWRDGRTGYPLIDANMRELSATGYMSNRGRQIVCSFLVRDMGVDWR 467
Query: 462 MGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQ 521
MGAEWFETCLLDYDP SNYGNWTYGAGVGNDPREDRYFSIPKQA++YD EGEYVAYWLP+
Sbjct: 468 MGAEWFETCLLDYDPASNYGNWTYGAGVGNDPREDRYFSIPKQAKSYDPEGEYVAYWLPE 527
Query: 522 LKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNN 567
L++L KERRNFPG SYI Q+V LK NQ ++Q R R NN
Sbjct: 528 LRSLAKERRNFPGASYIRQVVPLKFDGGNQRKDQQ--FNRQRRPNN 571
>gi|226508658|ref|NP_001146707.1| uncharacterized protein LOC100280309 [Zea mays]
gi|219888435|gb|ACL54592.1| unknown [Zea mays]
Length = 550
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/526 (69%), Positives = 430/526 (81%), Gaps = 11/526 (2%)
Query: 51 IPGADSREINHIVEETFGRYTSKAL-KRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMV 109
+P + E + +E F RYTS +L +R G GVA+VWFRNDLRV+DNEALL+AW +SE V
Sbjct: 20 VPSLGADEACAVADEAFRRYTSPSLLRRGGVGVAVVWFRNDLRVIDNEALLRAWAASEAV 79
Query: 110 LPVYCVDPR-HSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEII 168
LPVYCVDPR + +T++FGFPK GALRAQFLIECL DL+++L +GL+LL+RHGKPEEI+
Sbjct: 80 LPVYCVDPRVFAGSTHYFGFPKKGALRAQFLIECLGDLKQSLRKKGLDLLVRHGKPEEIL 139
Query: 169 PSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLS--SQSNDKSTNHPQLKLIWGT 226
PS+AK+ AH +YA KETCSEEL VERLV K L+QV ++ S K +P+L+LIWG
Sbjct: 140 PSIAKAVSAHTIYAHKETCSEELLVERLVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGA 199
Query: 227 TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPS-----VVDWGSVP 281
TMYH+DD+PF SSLPDVYT FRK++E+KC+VR C ++P+S GPPPS + WG+VP
Sbjct: 200 TMYHIDDLPFPVSSLPDVYTQFRKAVESKCSVRNCAKLPTSLGPPPSSSIDEIGGWGTVP 259
Query: 282 LIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSP 341
+E L K KGM F+GGESAALGRV+EYFWKKD LK YK TRN MLGPDYSTKFSP
Sbjct: 260 TLESLGPSVTKSEKGMHFIGGESAALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSP 319
Query: 342 WLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR 401
WLASGS+SPRYI EEVK YE++RVANDSTYWVLFEL+WRDYFRF+S KYGN++FHLGGPR
Sbjct: 320 WLASGSLSPRYICEEVKRYEKQRVANDSTYWVLFELIWRDYFRFLSAKYGNAIFHLGGPR 379
Query: 402 KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWR 461
K+ KWSQDQ LFESWRDG TGYPLIDANM+ELS TG+MSNRGRQI CSFLVRDMG+DWR
Sbjct: 380 KVVSKWSQDQALFESWRDGRTGYPLIDANMRELSATGYMSNRGRQIVCSFLVRDMGVDWR 439
Query: 462 MGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQ 521
MGAEWFETCLLDYDP SNYGNWTYGAGVGNDPREDRYFSIPKQA++YD EGEYVAYWLP+
Sbjct: 440 MGAEWFETCLLDYDPASNYGNWTYGAGVGNDPREDRYFSIPKQAKSYDPEGEYVAYWLPE 499
Query: 522 LKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNN 567
L++L KERRNFPG SYI Q+V LK NQ ++Q R R NN
Sbjct: 500 LRSLAKERRNFPGASYIRQVVPLKFDGGNQRKDQQ--FNRQRRPNN 543
>gi|110825715|sp|Q38JU2.2|CRYD_SOLLC RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
AltName: Full=Cryptochrome-3; Flags: Precursor
gi|98467788|gb|ABB01166.2| cryptochrome 3 [Solanum lycopersicum]
Length = 577
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/542 (67%), Positives = 437/542 (80%), Gaps = 7/542 (1%)
Query: 39 NIQQKVIPHCQVIPGADSREINHIVEETFGRYTSKALKRNGKG-VAIVWFRNDLRVLDNE 97
++ + P Q +PG E+ + E+TF RY S L + VAIVWFRNDLRVLDNE
Sbjct: 35 SLTARTTPTVQNVPGLTPEEMERVCEQTFQRYESGGLGKRKGKGVAIVWFRNDLRVLDNE 94
Query: 98 ALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNL 157
ALL+AW SSE +LPVYCVDPR TT++FG PKTGALRAQF+IECL DL++NL+ RGL+L
Sbjct: 95 ALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECLNDLKRNLVKRGLDL 154
Query: 158 LIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQS---NDK- 213
LI+HGKPE+I+PSLAK++ AH VYA KETCSEE+ VE++V +NLQ++V S ND
Sbjct: 155 LIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQKLVSPSSGGIGNDPG 214
Query: 214 STNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPS 273
S N +L+L+WG+TMYH+DD+PFD SLPDVYT FRKS+E K VR C ++P+SFGPPP
Sbjct: 215 SGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSKVRNCTKLPTSFGPPPE 274
Query: 274 VVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGP 333
V DWG VP + +L L KVSKGM FVGGESAALGRV++YFWKKDLLKVYKETRN MLG
Sbjct: 275 VGDWGHVPQVSELGLQQEKVSKGMNFVGGESAALGRVHDYFWKKDLLKVYKETRNGMLGA 334
Query: 334 DYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNS 393
DYSTKFSPWLASGS+SPR+IYEEVK YE+ER++NDSTYWVLFEL+WRDYFRF+S+K N
Sbjct: 335 DYSTKFSPWLASGSLSPRFIYEEVKRYEKERLSNDSTYWVLFELIWRDYFRFLSIKLANL 394
Query: 394 LFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLV 453
LF GGP+K+ WSQDQ +F++WR G TGYPLIDANMKEL+ TG+MSNRGRQI CSFLV
Sbjct: 395 LFQAGGPQKVNINWSQDQTMFDAWRRGQTGYPLIDANMKELAATGYMSNRGRQIVCSFLV 454
Query: 454 RDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGE 513
RDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYD EGE
Sbjct: 455 RDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGE 514
Query: 514 YVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSL-TRTGR-RNNFKGK 571
+VAYWLP+L+ALP+E+R+ PG Y+ IV+LKHG + + + +R GR +N + +
Sbjct: 515 FVAYWLPELRALPREKRHSPGMMYLNPIVALKHGYTKKTGDSKTAFSSRRGRPEDNRRKR 574
Query: 572 HA 573
H
Sbjct: 575 HG 576
>gi|97047673|sp|Q84KJ5.2|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
AltName: Full=Cryptochrome-3; Flags: Precursor
Length = 569
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/510 (71%), Positives = 419/510 (82%), Gaps = 14/510 (2%)
Query: 43 KVIPHCQVIPGADSREINHIVEETFGRY---TSKALKRNGKGVAIVWFRNDLRVLDNEAL 99
K+ H +P EI+ + +TF RY +S ++KR GKGV I+WFRNDLRVLDN+AL
Sbjct: 43 KMNDHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDAL 102
Query: 100 LKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLI 159
KAW SS+ +LPVYC+DPR TT+ F FPKTGALR FL+ECL DLRKNLM RGLNLLI
Sbjct: 103 YKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLI 162
Query: 160 RHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQ 219
R GKPEEI+PSLAK FGA V+A KETCSEE++VERLV + L++V N +
Sbjct: 163 RSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRV----------GNSTK 212
Query: 220 LKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGS 279
L+LIWG+TMYH DD+PFD LPDVYT FRKS+EAKC++R RIP S GP PSV DWG
Sbjct: 213 LELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGD 272
Query: 280 VPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKF 339
VP +E+L + +V++GMRFVGGESA +GRV EYFWKKDLLKVYKETRN MLGPDYSTKF
Sbjct: 273 VPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKF 332
Query: 340 SPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG 399
SPWLA G ISPR+IYEEV+ YE+ERVAN+STYWVLFEL+WRDYFRF+S+K GNSLFHLGG
Sbjct: 333 SPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGG 392
Query: 400 PRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGID 459
PR ++ KWSQDQKLFESWRD TGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMG+D
Sbjct: 393 PRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLD 452
Query: 460 WRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWL 519
WRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYD EGEYVA+WL
Sbjct: 453 WRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWL 512
Query: 520 PQLKALPKERRNFPGG-SYIEQIVSLKHGN 548
QL+ LPKE+R++PG Y++ +V LKHGN
Sbjct: 513 QQLRRLPKEKRHWPGRLMYMDTVVPLKHGN 542
>gi|297812689|ref|XP_002874228.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320065|gb|EFH50487.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 566
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/529 (69%), Positives = 423/529 (79%), Gaps = 15/529 (2%)
Query: 47 HCQVIPGADSREINHIVEETFGRYT--SKALKRNGKGVAIVWFRNDLRVLDNEALLKAWD 104
H +P + E + + +TF RY S + KRNGKG+ I+WFRNDLRVLDN+AL KAW
Sbjct: 47 HIHRVPALNEEENDSVAIKTFERYALPSSSTKRNGKGITILWFRNDLRVLDNDALYKAWS 106
Query: 105 SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKP 164
SS+ +LPVYC+DPR TT+ F FPKTGALR FL+ECL DLRKNLM RGLNLLIR GKP
Sbjct: 107 SSDTLLPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKP 166
Query: 165 EEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIW 224
EEI+PSLAK FGAH V+A KETCSEEL+VERLV + L+ V N +L+LIW
Sbjct: 167 EEILPSLAKDFGAHTVFAHKETCSEELHVERLVNQGLKGV----------GNGTKLELIW 216
Query: 225 GTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIE 284
G+TMYH DD+PFD LPDVYT FRKS+EAKC++R RIP S GP PSV DWG VP +E
Sbjct: 217 GSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPIPSVDDWGDVPTLE 276
Query: 285 QLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLA 344
QL + +V++GMRFVGGESA +GRV EYFWKKDLLKVYK+TRN MLGPDYSTKFSPWLA
Sbjct: 277 QLGIEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKDTRNGMLGPDYSTKFSPWLA 336
Query: 345 SGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE 404
G ISPR+IYEEV+ YE+ERVAN+STYWVLFEL+WRDYFRF+S+K GNSLFHLGGPR ++
Sbjct: 337 FGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQ 396
Query: 405 YKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGA 464
KWSQDQKLFESWRDG TGYPLIDANMKEL TGFMSNRGRQI CSFLVRDMG+DWRMGA
Sbjct: 397 GKWSQDQKLFESWRDGKTGYPLIDANMKELYTTGFMSNRGRQIVCSFLVRDMGLDWRMGA 456
Query: 465 EWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKA 524
EWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYD EGEYVA+WL QL+
Sbjct: 457 EWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLRR 516
Query: 525 LPKERRNFPGG-SYIEQIVSLKHGNINQNRNQNDSL--TRTGRRNNFKG 570
LPKE+R++PG Y++ +V LKHG + + +GRR+ G
Sbjct: 517 LPKEKRHWPGRLMYMDTVVPLKHGQMAGGSKSGGGFRGSHSGRRSRHNG 565
>gi|22327046|ref|NP_568461.2| cryptochrome DASH [Arabidopsis thaliana]
gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana]
Length = 526
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/506 (71%), Positives = 417/506 (82%), Gaps = 14/506 (2%)
Query: 47 HCQVIPGADSREINHIVEETFGRY---TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAW 103
H +P EI+ + +TF RY +S ++KR GKGV I+WFRNDLRVLDN+AL KAW
Sbjct: 4 HIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAW 63
Query: 104 DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGK 163
SS+ +LPVYC+DPR TT+ F FPKTGALR FL+ECL DLRKNLM RGLNLLIR GK
Sbjct: 64 SSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGK 123
Query: 164 PEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLI 223
PEEI+PSLAK FGA V+A KETCSEE++VERLV + L++V N +L+LI
Sbjct: 124 PEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRV----------GNSTKLELI 173
Query: 224 WGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLI 283
WG+TMYH DD+PFD LPDVYT FRKS+EAKC++R RIP S GP PSV DWG VP +
Sbjct: 174 WGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTL 233
Query: 284 EQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWL 343
E+L + +V++GMRFVGGESA +GRV EYFWKKDLLKVYKETRN MLGPDYSTKFSPWL
Sbjct: 234 EKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWL 293
Query: 344 ASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL 403
A G ISPR+IYEEV+ YE+ERVAN+STYWVLFEL+WRDYFRF+S+K GNSLFHLGGPR +
Sbjct: 294 AFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNV 353
Query: 404 EYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMG 463
+ KWSQDQKLFESWRD TGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMG+DWRMG
Sbjct: 354 QGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMG 413
Query: 464 AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYD EGEYVA+WL QL+
Sbjct: 414 AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLR 473
Query: 524 ALPKERRNFPGG-SYIEQIVSLKHGN 548
LPKE+R++PG Y++ +V LKHGN
Sbjct: 474 RLPKEKRHWPGRLMYMDTVVPLKHGN 499
>gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana]
Length = 525
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/506 (71%), Positives = 417/506 (82%), Gaps = 14/506 (2%)
Query: 47 HCQVIPGADSREINHIVEETFGRY---TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAW 103
H +P EI+ + +TF RY +S ++KR GKGV I+WFRNDLRVLDN+AL KAW
Sbjct: 3 HIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAW 62
Query: 104 DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGK 163
SS+ +LPVYC+DPR TT+ F FPKTGALR FL+ECL DLRKNLM RGLNLLIR GK
Sbjct: 63 SSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGK 122
Query: 164 PEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLI 223
PEEI+PSLAK FGA V+A KETCSEE++VERLV + L++V N +L+LI
Sbjct: 123 PEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRV----------GNSTKLELI 172
Query: 224 WGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLI 283
WG+TMYH DD+PFD LPDVYT FRKS+EAKC++R RIP S GP PSV DWG VP +
Sbjct: 173 WGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTL 232
Query: 284 EQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWL 343
E+L + +V++GMRFVGGESA +GRV EYFWKKDLLKVYKETRN MLGPDYSTKFSPWL
Sbjct: 233 EKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWL 292
Query: 344 ASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL 403
A G ISPR+IYEEV+ YE+ERVAN+STYWVLFEL+WRDYFRF+S+K GNSLFHLGGPR +
Sbjct: 293 AFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNV 352
Query: 404 EYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMG 463
+ KWSQDQKLFESWRD TGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMG+DWRMG
Sbjct: 353 QGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMG 412
Query: 464 AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYD EGEYVA+WL QL+
Sbjct: 413 AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLR 472
Query: 524 ALPKERRNFPGG-SYIEQIVSLKHGN 548
LPKE+R++PG Y++ +V LKHGN
Sbjct: 473 RLPKEKRHWPGRLMYMDTVVPLKHGN 498
>gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/506 (71%), Positives = 415/506 (82%), Gaps = 15/506 (2%)
Query: 47 HCQVIPGADSREINHIVEETFGRY---TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAW 103
H +P EI+ + +TF RY +S ++KR GKGV I+WFRNDLRVLDN+AL KAW
Sbjct: 4 HIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAW 63
Query: 104 DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGK 163
SS+ +LPVYC+DPR TT+ F FPKTGALR FL+ECL DLRKNLM RGLNLLIR GK
Sbjct: 64 SSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGK 123
Query: 164 PEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLI 223
PEEI+PSLAK FGA V+A KETCSEE++VERLV + L++V N +L+LI
Sbjct: 124 PEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRV----------GNSTKLELI 173
Query: 224 WGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLI 283
WG+TMYH DD+PFD LPDVYT FRKS+EAKC++R RIP S GP PSV DWG VP +
Sbjct: 174 WGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTL 233
Query: 284 EQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWL 343
E+L + +V++GMRFVGGESA +GRV EYFWKKDLLKVYKETRN MLGPDYSTKFSPWL
Sbjct: 234 EKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWL 293
Query: 344 ASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL 403
A G ISPR+IYEEV+ YE+ERVAN+STYWVLFEL+WRDYFRF+S+K GNSLFHLGGPR +
Sbjct: 294 AFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNV 353
Query: 404 EYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMG 463
KWSQDQKLFESWRD TGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMG+DWRMG
Sbjct: 354 NGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMG 413
Query: 464 AEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
AEWFETCLLDYDPCSNYGNWTYGAGV NDPREDRYFSIPKQAQNYD EGEYVA+WL QL+
Sbjct: 414 AEWFETCLLDYDPCSNYGNWTYGAGV-NDPREDRYFSIPKQAQNYDPEGEYVAFWLQQLR 472
Query: 524 ALPKERRNFPGG-SYIEQIVSLKHGN 548
LPKE+R++PG Y++ +V LKHGN
Sbjct: 473 RLPKEKRHWPGRLMYMDTVVPLKHGN 498
>gi|255574121|ref|XP_002527976.1| DNA photolyase, putative [Ricinus communis]
gi|223532602|gb|EEF34388.1| DNA photolyase, putative [Ricinus communis]
Length = 578
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/552 (65%), Positives = 432/552 (78%), Gaps = 31/552 (5%)
Query: 51 IPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVL 110
+P D+ + I F RY++ R+GKG AIVWFRNDLR+LDNE L KAW SSE VL
Sbjct: 26 VPDLDTDAFDRIASNAFERYSTTMATRHGKGTAIVWFRNDLRILDNEVLFKAWLSSEAVL 85
Query: 111 PVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPS 170
PVYCVDPR QTT++FGFPKTGALRAQF+IECLADL+KNLM RGLNLLIRHGKPEE++PS
Sbjct: 86 PVYCVDPRLFQTTHYFGFPKTGALRAQFIIECLADLKKNLMKRGLNLLIRHGKPEEVLPS 145
Query: 171 LAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNH--PQLKLIWGTTM 228
LA++F AH VYA KETCSEE++VE+L+ K L +V LS + K++ + P+L+LIWG+TM
Sbjct: 146 LAQAFAAHTVYAHKETCSEEVHVEKLMNKALHRVKLSPPPDSKASANTTPKLQLIWGSTM 205
Query: 229 YHLDDIPFDHSSLPDVYTHFRKS-------------IEAKCTVRGCIRIPSSFGPPPSVV 275
YH+DD+PF+ +SLPD + FRK+ +E KC VR CI+IP S PPP+V
Sbjct: 206 YHIDDLPFNITSLPDDFFDFRKARIIPFFMLLMLQIVEPKCAVRSCIKIPKSLAPPPTVE 265
Query: 276 DWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK-------------DLLKV 322
DWG VP I QL L K ++GMRF+GGESAA+ RV EY WKK DL K
Sbjct: 266 DWGCVPSIHQLGLEEQK-ARGMRFLGGESAAISRVYEYLWKKASGICLLNLHCCSDLAKT 324
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YKETRN +LG DYSTKFSPWLA GS+SPR+IYEEVK YERER+ANDST+ VLF L+WRD+
Sbjct: 325 YKETRNGLLGLDYSTKFSPWLAQGSLSPRFIYEEVKRYERERLANDSTHRVLFVLLWRDH 384
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
FRF S+K GNS+FHLGGPR + +WSQDQ+LFESWRDG TGYPLIDANMKELS TGFMSN
Sbjct: 385 FRFFSIKCGNSIFHLGGPRNVAQRWSQDQRLFESWRDGRTGYPLIDANMKELSATGFMSN 444
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
RGR I CSFLVRDMG+DWRMGAEWFETCLLDYDPCSNYGNWTYGAG+GND REDRYFSIP
Sbjct: 445 RGRMIVCSFLVRDMGVDWRMGAEWFETCLLDYDPCSNYGNWTYGAGIGNDNREDRYFSIP 504
Query: 503 KQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRT 562
KQAQ++D EGEYVAYWLP+L+ L K++R+FPG SY+E+IV LK+GN ++ +Q + +
Sbjct: 505 KQAQSFDPEGEYVAYWLPELRKLQKDKRHFPGMSYVERIVPLKYGNPKKHYDQERAF--S 562
Query: 563 GRRNNFKGKHAQ 574
R+ N+ G+ A+
Sbjct: 563 TRQTNYPGRQAK 574
>gi|115469358|ref|NP_001058278.1| Os06g0661800 [Oryza sativa Japonica Group]
gi|113596318|dbj|BAF20192.1| Os06g0661800 [Oryza sativa Japonica Group]
Length = 547
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/499 (72%), Positives = 420/499 (84%), Gaps = 9/499 (1%)
Query: 67 FGRYTSKALKRNGKG-VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ-TTY 124
F RYTS +++R+G G VAIVWFRNDLRVLDNEA+++AW +S+ VLPVYCVDPR S +T+
Sbjct: 34 FLRYTSPSMRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTH 93
Query: 125 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184
+FGFPKTGALRAQFLIECL DL++NL +GL+LLIRHGKPE+I+PS+AK+ AH VYA K
Sbjct: 94 YFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHK 153
Query: 185 ETCSEELNVERLVRKNLQQVVL--SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP 242
ETCSEEL VE LVRK L+QVV+ SN K +P+L+LIWG T+YH+DD+PF ++LP
Sbjct: 154 ETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLP 213
Query: 243 DVYTHFRKSIEAKCTVRGCIRIPSSFGPP-----PSVVDWGSVPLIEQLELHSPKVSKGM 297
DVYT FRK++E+K +VR C ++P S GPP + WG+VP +E L L K KGM
Sbjct: 214 DVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGM 273
Query: 298 RFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
FVGGESAALGRV+EYFWKKD LKVYKETRN MLGPDYSTKFSPWLASGS+SPRYI EEV
Sbjct: 274 HFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEV 333
Query: 358 KSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESW 417
K YE++R+ANDSTYWVLFEL+WRDYFRFIS KYGNS+FHLGGPR +E KWSQDQ LFESW
Sbjct: 334 KRYEKQRIANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGGPRNVESKWSQDQALFESW 393
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
RDG TGYPLIDANMKEL TGFMSNRGRQI CSFLVRDMGIDWRMGAEWFETCLLDYDP
Sbjct: 394 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 453
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSY 537
SNYGNWTYGAGVGNDPREDRYFSIPKQA+ YD +GEYVAYWLP+L+++ KERRNFPG SY
Sbjct: 454 SNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGASY 513
Query: 538 IEQIVSLKHGNINQNRNQN 556
I+Q+V LK +Q R+Q
Sbjct: 514 IKQVVPLKFDGGHQKRDQQ 532
>gi|75322263|sp|Q651U1.1|CRYD_ORYSJ RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
Flags: Precursor
gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa Japonica Group]
gi|52077386|dbj|BAD46426.1| putative cryptochrome dash [Oryza sativa Japonica Group]
Length = 582
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/499 (72%), Positives = 421/499 (84%), Gaps = 9/499 (1%)
Query: 67 FGRYTSKALKRNGKG-VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ-TTY 124
F RYTS +++R+G G VAIVWFRNDLRVLDNEA+++AW +S+ VLPVYCVDPR S +T+
Sbjct: 69 FLRYTSPSMRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTH 128
Query: 125 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184
+FGFPKTGALRAQFLIECL DL++NL +GL+LLIRHGKPE+I+PS+AK+ AH VYA K
Sbjct: 129 YFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHK 188
Query: 185 ETCSEELNVERLVRKNLQQVVL--SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP 242
ETCSEEL VE LVRK L+QVV+ SN K +P+L+LIWG T+YH+DD+PF ++LP
Sbjct: 189 ETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLP 248
Query: 243 DVYTHFRKSIEAKCTVRGCIRIPSSFGPPP-----SVVDWGSVPLIEQLELHSPKVSKGM 297
DVYT FRK++E+K +VR C ++P S GPPP + WG+VP +E L L K KGM
Sbjct: 249 DVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGM 308
Query: 298 RFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
FVGGESAALGRV+EYFWKKD LKVYKETRN MLGPDYSTKFSPWLASGS+SPRYI EEV
Sbjct: 309 HFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEV 368
Query: 358 KSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESW 417
K YE++R+ANDSTYWVLFEL+WRDYFRFIS KYGNS+FHLGGPR +E KWSQDQ LFESW
Sbjct: 369 KRYEKQRIANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGGPRNVESKWSQDQALFESW 428
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
RDG TGYPLIDANMKEL TGFMSNRGRQI CSFLVRDMGIDWRMGAEWFETCLLDYDP
Sbjct: 429 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 488
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSY 537
SNYGNWTYGAGVGNDPREDRYFSIPKQA+ YD +GEYVAYWLP+L+++ KERRNFPG SY
Sbjct: 489 SNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGASY 548
Query: 538 IEQIVSLKHGNINQNRNQN 556
I+Q+V LK +Q R+Q
Sbjct: 549 IKQVVPLKFDGGHQKRDQQ 567
>gi|222636034|gb|EEE66166.1| hypothetical protein OsJ_22248 [Oryza sativa Japonica Group]
Length = 547
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/499 (72%), Positives = 419/499 (83%), Gaps = 9/499 (1%)
Query: 67 FGRYTSKALKRNGKG-VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ-TTY 124
F RYTS +++R+G G VAIVWFRNDLRVLDNEA+++AW +S+ V PVYCVDPR S +T+
Sbjct: 34 FLRYTSPSMRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVFPVYCVDPRISAGSTH 93
Query: 125 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184
+FGFPKTGALRAQFLIECL DL++NL +GL+LLIRHGKPE+I+PS+AK+ AH VYA K
Sbjct: 94 YFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHK 153
Query: 185 ETCSEELNVERLVRKNLQQVVL--SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP 242
ETCSEEL VE LVRK L+QVV+ SN K +P+L+LIWG T+YH+DD+PF ++LP
Sbjct: 154 ETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLP 213
Query: 243 DVYTHFRKSIEAKCTVRGCIRIPSSFGPP-----PSVVDWGSVPLIEQLELHSPKVSKGM 297
DVYT FRK++E+K +VR C ++P S GPP + WG+VP +E L L K KGM
Sbjct: 214 DVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGM 273
Query: 298 RFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
FVGGESAALGRV+EYFWKKD LKVYKETRN MLGPDYSTKFSPWLASGS+SPRYI EEV
Sbjct: 274 HFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEV 333
Query: 358 KSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESW 417
K YE++R+ANDSTYWVLFEL+WRDYFRFIS KYGNS+FHLGGPR +E KWSQDQ LFESW
Sbjct: 334 KRYEKQRIANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGGPRNVESKWSQDQALFESW 393
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
RDG TGYPLIDANMKEL TGFMSNRGRQI CSFLVRDMGIDWRMGAEWFETCLLDYDP
Sbjct: 394 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 453
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSY 537
SNYGNWTYGAGVGNDPREDRYFSIPKQA+ YD +GEYVAYWLP+L+++ KERRNFPG SY
Sbjct: 454 SNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGASY 513
Query: 538 IEQIVSLKHGNINQNRNQN 556
I+Q+V LK +Q R+Q
Sbjct: 514 IKQVVPLKFDGGHQKRDQQ 532
>gi|357123300|ref|XP_003563349.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Brachypodium distachyon]
Length = 587
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/530 (67%), Positives = 424/530 (80%), Gaps = 13/530 (2%)
Query: 50 VIPGADSREINHIVEETFGRYTS-KALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEM 108
+P + E +E F R+TS + G GVA+VWFRNDLRVLDNEAL++AW ++E
Sbjct: 55 AVPSLGADETAATADEAFRRHTSPGLRRGGGGGVAVVWFRNDLRVLDNEALVRAWAAAEA 114
Query: 109 VLPVYCVDPR-HSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEI 167
VLPVYCVDPR + T+ FGFPKTGALRAQFLIECL DL++NL RGLNLL+RHGKPE+I
Sbjct: 115 VLPVYCVDPRIFAGVTHRFGFPKTGALRAQFLIECLEDLKQNLQKRGLNLLVRHGKPEDI 174
Query: 168 IPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVL----SSQSNDKSTNHPQLKLI 223
+P++AK+ AH VYA +ETCSEE+ VERLV + L+QVV+ SN +P+L+LI
Sbjct: 175 LPAIAKAVRAHTVYAHQETCSEEILVERLVHRGLEQVVIPQGPGGASNQNKPLNPKLQLI 234
Query: 224 WGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPS-----VVDWG 278
WGTTMYH+DD+ F S+LPDVYT FRK++E+K +V+ C ++P GP PS + WG
Sbjct: 235 WGTTMYHVDDLLFPVSNLPDVYTQFRKAVESKSSVQNCCKLPPLLGPAPSSGLDELGGWG 294
Query: 279 SVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTK 338
S+P +E L L K KGM F+GGESAALGRV+EYFWKKD LKVYKETRN MLGPDYSTK
Sbjct: 295 SIPTLESLGLSVTKAEKGMHFLGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTK 354
Query: 339 FSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLG 398
FSPWLASGS+SPRYI EEVK YE++RVANDSTYWVLFEL+WRDYFRF+S+KYG+S+FHLG
Sbjct: 355 FSPWLASGSLSPRYICEEVKRYEKQRVANDSTYWVLFELIWRDYFRFLSVKYGSSIFHLG 414
Query: 399 GPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGI 458
GPRK+ KWSQDQ LFESWR+G TGYPLIDANMKEL TGFMSNRGRQI CSFLVRDM I
Sbjct: 415 GPRKVVSKWSQDQVLFESWRNGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMAI 474
Query: 459 DWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
DWRMGAEWFETCLLDYDP SNYGNWTYGAGVGNDPREDRYFSIPKQA+ YD +GEYVAYW
Sbjct: 475 DWRMGAEWFETCLLDYDPASNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPDGEYVAYW 534
Query: 519 LPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNF 568
LP+L++LPKERRNFPG SYI+QI+ LK +Q ++Q R + NN
Sbjct: 535 LPELQSLPKERRNFPGASYIKQIIPLKFDGGHQKKDQQ--FNRQRKPNNI 582
>gi|218198696|gb|EEC81123.1| hypothetical protein OsI_24002 [Oryza sativa Indica Group]
Length = 547
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/499 (72%), Positives = 420/499 (84%), Gaps = 9/499 (1%)
Query: 67 FGRYTSKALKRNGKG-VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ-TTY 124
F RYTS +++R+G G VAIVWFRNDLRVLDNEA+++AW +S+ VLPVYCVDPR S +T+
Sbjct: 34 FLRYTSPSMRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTH 93
Query: 125 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184
+FGFPKTGALRAQFLIECL DL++NL +GL+LLIRHGKPE+I+PS+AK+ AH VYA +
Sbjct: 94 YFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHQ 153
Query: 185 ETCSEELNVERLVRKNLQQVVL--SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP 242
ETCSEEL VE LVRK L+QVV+ SN K +P+L+LIWG T+YH+DD+PF ++LP
Sbjct: 154 ETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLP 213
Query: 243 DVYTHFRKSIEAKCTVRGCIRIPSSFGPP-----PSVVDWGSVPLIEQLELHSPKVSKGM 297
DVYT FRK++E+K +VR C ++P S GPP + WG+VP +E L L K KGM
Sbjct: 214 DVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGM 273
Query: 298 RFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
FVGGESAALGRV+EYFWKKD LKVYK+TRN MLGPDYSTKFSPWLASGS+SPRYI EEV
Sbjct: 274 HFVGGESAALGRVHEYFWKKDQLKVYKKTRNGMLGPDYSTKFSPWLASGSLSPRYICEEV 333
Query: 358 KSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESW 417
K YE++R+ANDSTYWVLFEL+WRDYFRFIS KYGNS+FHLGGPR +E KWSQDQ LFESW
Sbjct: 334 KRYEKQRIANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGGPRNVESKWSQDQALFESW 393
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
RDG TGYPLIDANMKEL TGFMSNRGRQI CSFLVRDMGIDWRMGAEWFETCLLDYDP
Sbjct: 394 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 453
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSY 537
SNYGNWTYGAGVGNDPREDRYFSIPKQA+ YD +GEYVAYWLP+L+++ KERRNFPG SY
Sbjct: 454 SNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGASY 513
Query: 538 IEQIVSLKHGNINQNRNQN 556
I+Q+V LK +Q R+Q
Sbjct: 514 IKQVVPLKFDGGHQKRDQQ 532
>gi|326500588|dbj|BAK06380.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/481 (71%), Positives = 401/481 (83%), Gaps = 6/481 (1%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPR-HSQTTYHFGFPKTGALRAQFLI 140
V++VWFR+DLRVLDNEAL +AW +S VLPVYCVDPR + T+ FGFPKTGALRAQFLI
Sbjct: 97 VSVVWFRSDLRVLDNEALARAWAASGAVLPVYCVDPRVLAGATHRFGFPKTGALRAQFLI 156
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
ECL DL++NL RGL+LL+RHGKPE+I+P +AK+ AH VYA KETCSEEL VE LVR+
Sbjct: 157 ECLGDLKQNLQKRGLDLLVRHGKPEDILPEIAKAVSAHTVYAHKETCSEELLVEHLVRRG 216
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L++V++ + P+L+LIWG TMYH+DD+PF S+LPDVYT FRK++E+K +VR
Sbjct: 217 LEKVIIPQGGASNKSLSPKLQLIWGATMYHIDDLPFPVSNLPDVYTQFRKAVESKSSVRS 276
Query: 261 CIRIPSSFGPPPS-----VVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
C ++P S GP PS + WGS+P +E L L K KGMRFVGGESAALGRV+EYFW
Sbjct: 277 CSKLPPSLGPAPSSGLDEIGGWGSIPTLESLGLSVTKSEKGMRFVGGESAALGRVHEYFW 336
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
K D LKVYKETRN MLGPDYSTKFSPWLASGS+SPRY+ EEV+ YE++RVANDSTYWVLF
Sbjct: 337 KNDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYVCEEVRRYEKQRVANDSTYWVLF 396
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WRDYFRF+S KYGNS+FHLGGPRK+ KWSQDQ LFESW+DG TGYPLIDANMKEL
Sbjct: 397 ELIWRDYFRFLSEKYGNSIFHLGGPRKVASKWSQDQALFESWKDGRTGYPLIDANMKELL 456
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TGFMSNRGRQI CSFLVRDMGIDWRMGAEWFETCLLDYDP SNYGNWTYGAGVGNDPRE
Sbjct: 457 ATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNWTYGAGVGNDPRE 516
Query: 496 DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQ 555
DRYFSIPKQA+ YD +GEYVAYWLP+L++L KERRNFPG SYI+Q+V LK +Q ++Q
Sbjct: 517 DRYFSIPKQAKTYDPDGEYVAYWLPELRSLAKERRNFPGASYIKQVVPLKFDGGHQRKDQ 576
Query: 556 N 556
Sbjct: 577 Q 577
>gi|302797733|ref|XP_002980627.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
gi|300151633|gb|EFJ18278.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
Length = 499
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/495 (64%), Positives = 381/495 (76%), Gaps = 22/495 (4%)
Query: 63 VEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT 122
VE RY+S RNGKGV+I+WFRNDLR++DNEAL KAW SS VLPVYCVDPRH T
Sbjct: 5 VESMIQRYSSAGSSRNGKGVSIMWFRNDLRIVDNEALFKAWASSSSVLPVYCVDPRHFGT 64
Query: 123 TYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA 182
T++F FPKTG LRAQFL+E L DL+KNL RGL+L+IR G PE I+PSL ++ GA +YA
Sbjct: 65 THYFKFPKTGELRAQFLLESLVDLKKNLKKRGLDLVIRSGNPEFILPSLVEAVGADTIYA 124
Query: 183 QKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP 242
Q+ETCSEEL VE+ V+K++ +L+L+WGTTMYHL+D+PF + LP
Sbjct: 125 QEETCSEELQVEKAVKKSI-------------GTKAKLELVWGTTMYHLNDLPFTTARLP 171
Query: 243 DVYTHFRKSIEAKCTVRGCIRIPSSFGPPPS-----VVDWGSVPLIEQLELHSPKVSK-- 295
DVYT FRK++E+ VR C+++P + GP P V D VP + L L + S
Sbjct: 172 DVYTQFRKAVESSSRVRPCLKLPQTLGPLPDSLGEKVGDLDKVPNLSHLGLRPREQSSLA 231
Query: 296 GMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE 355
M+F GGE+AA+ R+ EYFW K+ L+ YKETRN MLG DYSTKFSPWLASGSISPR+I+E
Sbjct: 232 AMQFAGGETAAIQRLCEYFWTKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIHE 291
Query: 356 EVK-SYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK-WSQDQKL 413
E YE+ER AN+STYWVLFEL+WRDYFRF+S+KYGNS+FHL GPRK+ K WSQD+ L
Sbjct: 292 EASIKYEKERTANNSTYWVLFELIWRDYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTL 351
Query: 414 FESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLD 473
FE+WR G TGYPLIDANMKEL TGFMSNRGRQI CSFLVRDMGIDWRMGAEWFE+CLLD
Sbjct: 352 FEAWRTGTTGYPLIDANMKELYATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLD 411
Query: 474 YDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
YDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQ YD +G YV++W+PQL+ LP + R+FP
Sbjct: 412 YDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHFP 471
Query: 534 GGSYIEQIVSLKHGN 548
Y+++IV L+ N
Sbjct: 472 KVGYLKKIVPLRFSN 486
>gi|302790279|ref|XP_002976907.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
gi|300155385|gb|EFJ22017.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
Length = 499
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/495 (64%), Positives = 381/495 (76%), Gaps = 22/495 (4%)
Query: 63 VEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT 122
VE RY+S RNGKGV+I+WFRNDLR++DNEAL KAW SS VLPVYCVDPRH T
Sbjct: 5 VESMIQRYSSAGSSRNGKGVSIMWFRNDLRIVDNEALFKAWASSSSVLPVYCVDPRHFGT 64
Query: 123 TYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA 182
T++F FPKTG LRAQFL+E L DL+KNL RGL+L+IR G PE I+P L ++ GAH +YA
Sbjct: 65 THYFKFPKTGELRAQFLLESLVDLKKNLKKRGLDLVIRSGNPEFILPLLVEAVGAHTIYA 124
Query: 183 QKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP 242
Q+ETCSEEL VE+ V+K++ +L+L+WGTTMYHL+D+PF + LP
Sbjct: 125 QEETCSEELQVEKAVKKSI-------------GTKAKLELVWGTTMYHLNDLPFTTARLP 171
Query: 243 DVYTHFRKSIEAKCTVRGCIRIPSSFGPPPS-----VVDWGSVPLIEQLELHS-PKVS-K 295
DVYT FRK++E+ VR C+++P + GP P V D VP + L L +VS
Sbjct: 172 DVYTQFRKAVESSSRVRPCLKLPQTLGPLPDSLGEKVGDLDKVPNLSDLGLRPREQVSLA 231
Query: 296 GMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE 355
M+F GGE+AA+ R+ EYFW K+ L+ YKETRN MLG DYSTKFSPWLASGSISPR+IYE
Sbjct: 232 AMQFTGGETAAIQRLCEYFWTKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIYE 291
Query: 356 EVK-SYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK-WSQDQKL 413
E YE+ER AN+STYWVLFEL+WRDYFRF+S+KYGNS+FHL GPRK+ K WSQD+ L
Sbjct: 292 EASIKYEKERTANNSTYWVLFELIWRDYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTL 351
Query: 414 FESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLD 473
FE+WR G TGYPLIDANM+EL TGFMSNRGRQI CSFLVRDMGIDWRMGAEWFE+CLLD
Sbjct: 352 FEAWRTGTTGYPLIDANMRELYATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLD 411
Query: 474 YDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
YDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQ YD +G YV++W+PQL+ LP + R+ P
Sbjct: 412 YDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHSP 471
Query: 534 GGSYIEQIVSLKHGN 548
Y+++IV L+ N
Sbjct: 472 KVGYLKKIVPLRFSN 486
>gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens]
gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens]
Length = 557
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/484 (64%), Positives = 373/484 (77%), Gaps = 14/484 (2%)
Query: 72 SKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT 131
SK R G G+AIVWFRNDLR+ DNEALLKAW SS+ V+P+Y VDPR TYHFGFPKT
Sbjct: 55 SKMTSRKGTGIAIVWFRNDLRISDNEALLKAWQSSQAVVPLYVVDPRLYGQTYHFGFPKT 114
Query: 132 GALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEEL 191
G LRAQF++E +A+LR NL RGL+L++R GKPE+++PS+AKS GAH VYA KETCSEE
Sbjct: 115 GELRAQFIMESVANLRDNLRQRGLDLIVRQGKPEDVVPSIAKSIGAHTVYAHKETCSEET 174
Query: 192 NVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
VE V++ L + +L +WG T+YHLDD+PF S LPDVYT FRK
Sbjct: 175 TVETGVKRGLANL------EGGPKMQIRLDFVWGGTLYHLDDLPFSPSELPDVYTQFRKG 228
Query: 252 IEAKCTVRGCIRIPSSFGPPPS-----VVDWGSVPLIEQLELHSPKVSK--GMRFVGGES 304
+E C VR +++P+ GP P + + G +P + +L L + S M F GGE+
Sbjct: 229 VEYNCKVRPALKMPTQMGPLPESLSEKIGELGDIPTMAELGLKYREQSPLGVMHFEGGET 288
Query: 305 AALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERER 364
AAL R+ +YFW KD LK+YKETRN MLG +YSTKFSPWLA G +SPR I++EVK YE ER
Sbjct: 289 AALARLQDYFWNKDQLKIYKETRNGMLGANYSTKFSPWLAHGCLSPRTIHDEVKRYETER 348
Query: 365 VANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK-WSQDQKLFESWRDGCTG 423
VANDSTYWVLFEL+WRDYFRF+S+KYGN++FHLGGPRK+ K WSQ+++LFE+WR+G TG
Sbjct: 349 VANDSTYWVLFELIWRDYFRFVSIKYGNAIFHLGGPRKVVGKRWSQNRELFEAWREGRTG 408
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YPLIDANMKEL+ TGFMSNRGRQI CSFLVRD+G+DWRMG EWFETCLLDYDPCSNYGNW
Sbjct: 409 YPLIDANMKELAATGFMSNRGRQIVCSFLVRDLGLDWRMGGEWFETCLLDYDPCSNYGNW 468
Query: 484 TYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVS 543
TYGAGVGNDPREDRYFSIPKQ+ YD EGEYVA+WLP LK P ++RNFPG +Y+ IV
Sbjct: 469 TYGAGVGNDPREDRYFSIPKQSATYDPEGEYVAHWLPSLKQSPPKQRNFPGDAYLRPIVP 528
Query: 544 LKHG 547
LK G
Sbjct: 529 LKFG 532
>gi|413955018|gb|AFW87667.1| hypothetical protein ZEAMMB73_818499 [Zea mays]
Length = 404
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 285/395 (72%), Positives = 325/395 (82%), Gaps = 9/395 (2%)
Query: 180 VYAQKETCSEELNVERLVRKNLQQVVLS--SQSNDKSTNHPQLKLIWGTTMYHLDDIPFD 237
+YA KETCSEEL VERLV K L+QV ++ S K +P+L+LIWG TMYH+DD+PF
Sbjct: 5 IYAHKETCSEELLVERLVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFP 64
Query: 238 HSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPS-----VVDWGSVPLIEQLELHSPK 292
SSLPDVYT FRK++E+KC+VR C ++P+S GPPPS + WG+VP +E L K
Sbjct: 65 VSSLPDVYTQFRKAVESKCSVRNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLGPSVTK 124
Query: 293 VSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRY 352
KGM F+GGESAALGRV+EYFWKKD LK YK TRN MLGPDYSTKFSPWLASGS+SPRY
Sbjct: 125 SEKGMHFIGGESAALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRY 184
Query: 353 IYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQK 412
I EEVK YE++RVANDSTYWVLFEL+WRDYFRF+S KYGN++FHLGGPRK+ KWSQDQ
Sbjct: 185 ICEEVKRYEKQRVANDSTYWVLFELIWRDYFRFLSAKYGNAIFHLGGPRKVVSKWSQDQA 244
Query: 413 LFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLL 472
LFESWRDG TGYPLIDANM+ELS TG+MSNRGRQI CSFLVRDMG+DWRMGAEWFETCLL
Sbjct: 245 LFESWRDGRTGYPLIDANMRELSATGYMSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLL 304
Query: 473 DYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNF 532
DYDP SNYGNWTYGAGVGNDPREDRYFSIPKQA++YD EGEYVAYWLP+L++L KERRNF
Sbjct: 305 DYDPASNYGNWTYGAGVGNDPREDRYFSIPKQAKSYDPEGEYVAYWLPELRSLAKERRNF 364
Query: 533 PGGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNN 567
PG SYI Q+V LK NQ ++Q R R NN
Sbjct: 365 PGASYIRQVVPLKFDGGNQRKDQQ--FNRQRRPNN 397
>gi|357466477|ref|XP_003603523.1| Cryptochrome DASH [Medicago truncatula]
gi|355492571|gb|AES73774.1| Cryptochrome DASH [Medicago truncatula]
Length = 366
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/331 (75%), Positives = 280/331 (84%), Gaps = 5/331 (1%)
Query: 250 KSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKV---SKGMRFVGGESAA 306
++ EAKC VR CI++P+S GPPP + DWG +P +EQL L S V +KGM+FVGGE+AA
Sbjct: 37 QTAEAKCVVRSCIKLPTSLGPPPPIEDWGCLPSLEQLGLSSQNVGFVNKGMKFVGGETAA 96
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
L R+ EYFWKKDLLKVYKETRN MLGPDYSTKFSPWLASGS+SPR I+EEVK YE ER A
Sbjct: 97 LSRIYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRLIHEEVKRYENERQA 156
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
N STYWVLFEL+WRDYFRF+S+KYGNSLFH+GGPR ++ WSQD+KLFESWRDGCTGYPL
Sbjct: 157 NSSTYWVLFELIWRDYFRFLSVKYGNSLFHIGGPRNVQKNWSQDKKLFESWRDGCTGYPL 216
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
IDANMKELS TGFMSNRGRQI CSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG
Sbjct: 217 IDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 276
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKH 546
+GVGNDPREDRYFSIPKQAQ YD EGEYVAYWLPQL+A+ KE+RNFPG YI QIV LK
Sbjct: 277 SGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRAISKEKRNFPGNLYIRQIVPLKF 336
Query: 547 GNINQNRNQNDSLTRTGRRNNFKGKHAQVNR 577
G +++ N + SL RR N +G + NR
Sbjct: 337 GTTSRHNNGDKSL--GARRGNDRGNERRWNR 365
>gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
Length = 490
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/468 (52%), Positives = 321/468 (68%), Gaps = 18/468 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W RNDLR+ D+E L +A + ++PVYC DPR Q T FGFPKTG+ RAQFLIE +
Sbjct: 4 LLWLRNDLRLHDHEPLHRATEQGADIIPVYCFDPRQFQAT-SFGFPKTGSYRAQFLIETV 62
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L+ L +RG NL+I GKPEE IP+L K+F AVY +E EE+ VE+ + L Q
Sbjct: 63 AALKAELRSRGSNLVILQGKPEEEIPALVKAFDIAAVYWHEEVTPEEIEVEQRLETVLNQ 122
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++S+ + WG T+YH DD+PF+ S LP+V+T FRK+IE V
Sbjct: 123 LKVTSE------------VYWGATLYHPDDLPFEVSQLPEVFTQFRKAIEKNTQVFPTFP 170
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELH-SPKVSKG-MRFVGGESAALGRVNEYFWKKDLLK 321
P P+ ++ G +P + L L +P KG + F GGES L R+ YFW D L+
Sbjct: 171 TPEKLPSLPNEIEPGELPSLSDLGLERTPIDEKGVLPFKGGESKGLDRLQHYFWNADRLQ 230
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN MLG DYS+KFSPWLA+GS+SPR +YEEV+ YERER N+STYW++FELMWRD
Sbjct: 231 RYKETRNGMLGADYSSKFSPWLANGSLSPRRVYEEVQRYERERKKNNSTYWMIFELMWRD 290
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRF+ +KYG +F GG R L +W QD K F+ WR+G TGYPLIDANM+EL+ TGFMS
Sbjct: 291 YFRFVCVKYGRKIFRKGGIRGLPIEWQQDWKRFDLWREGKTGYPLIDANMRELAATGFMS 350
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GIDWRMGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+I
Sbjct: 351 NRGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRYFNI 410
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNI 549
PKQ+++YD EG+YV +WLP+LK LP ++ + P + Q V K N+
Sbjct: 411 PKQSKDYDSEGKYVKHWLPELKTLPAKKVHTP---WTLQTVEQKQFNV 455
>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 486
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 233/452 (51%), Positives = 319/452 (70%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+RNDLR+ D+E L +A +++P YC D R +TT FGFPKTG R QFL+E +
Sbjct: 7 LIWYRNDLRIHDHEPLYQAIKQGALIIPFYCFDIRQFKTT-SFGFPKTGNFRGQFLLESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
DL+K+L + G NL+IR G PE+IIP L K AVY +E SEE ++E V K L+
Sbjct: 66 TDLKKSLQDLGSNLIIRQGYPEKIIPELIKQLEIDAVYFHEEVTSEETDIENTVEKALKP 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++ K WG T+YH DD+PF+ S LP+V+T FRK +E TV +
Sbjct: 126 LNVT------------FKGFWGATLYHWDDLPFEVSKLPEVFTSFRKKVEKNSTVNPILI 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKV-SKG-MRFVGGESAALGRVNEYFWKKDLLK 321
P P + + G+VP +E+LEL PK S+G + F GGE+ + R+N YFW+++ LK
Sbjct: 174 SPRKLRSLPDI-EVGNVPSLEELELEKPKYDSRGVLEFKGGETEGIQRLNNYFWERNCLK 232
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN MLG DYS+KFSPWLA+G +SPRYIYEEV+ YE +R+ N+STYW++FEL+WRD
Sbjct: 233 EYKETRNGMLGADYSSKFSPWLANGCLSPRYIYEEVQKYEEKRIKNNSTYWLIFELLWRD 292
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFIS K+GN +F+ G + ++ W +DQ+ F+ W++G TGYPL+D NM+EL+ TGFMS
Sbjct: 293 YFRFISAKHGNKIFYQSGLQGVDIPWKEDQERFKLWQEGNTGYPLVDGNMRELAATGFMS 352
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI+W MGAEWFE+ L+DYD CSNYGNW Y AGVGND R RYF+I
Sbjct: 353 NRGRQNVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARGFRYFNI 412
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
PKQ+++YD +GEY+ +WLP+LK +P ++ + P
Sbjct: 413 PKQSKDYDPKGEYIKHWLPELKMIPGQKIHEP 444
>gi|428222871|ref|YP_007107041.1| DASH family cryptochrome [Synechococcus sp. PCC 7502]
gi|427996211|gb|AFY74906.1| cryptochrome, DASH family [Synechococcus sp. PCC 7502]
Length = 501
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/512 (47%), Positives = 335/512 (65%), Gaps = 34/512 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFRNDLR D+EAL +A + ++P+YC+DPRH T FGFPKTG+ RA+FL+E L
Sbjct: 6 IVWFRNDLRSHDHEALYRAIQTKAQIIPIYCIDPRHFAQT-SFGFPKTGSFRAKFLLESL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
DLR ++ G NL+IR G PE +IP LA A VY E SEE+ VE + NL++
Sbjct: 65 TDLRNKFISLGSNLIIRQGLPELVIPELAAQIQATDVYFHAEVTSEEIKVEAKLIDNLKK 124
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + S+S WG T+YH D +PF LP+++T FRK +E CTV C+
Sbjct: 125 ISIKSES------------FWGNTLYHPDALPFAIDRLPELFTSFRKEVEKFCTVNPCVP 172
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG---MRFVGGESAALGRVNEYFWKKDLL 320
IP+ + P ++ G +P +E+L L P ++ ++F+GGE+ AL R++ YFW+ DL+
Sbjct: 173 IPT-YLPSLQDLEIGEMPTLEELGLE-PAIADPRAVIKFIGGETQALERLDYYFWQSDLI 230
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
YKETRN MLG +YS+KFSPWLA G ISPRYIY +++ YE+ER+ NDSTYW++FEL+WR
Sbjct: 231 ATYKETRNAMLGGNYSSKFSPWLALGCISPRYIYAQIQKYEQERIKNDSTYWLVFELLWR 290
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
DYFRFI+ K+GN +F + G + + WS+D F+ W+ G TG+PLIDANM+EL+ TGFM
Sbjct: 291 DYFRFIATKHGNRIFKVSGLQGINLPWSEDLDKFKLWQMGKTGFPLIDANMQELAATGFM 350
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL ++MGI+W++GAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 351 SNRGRQNVASFLTKNMGINWQLGAEWFESMLIDYDVCSNWGNWNYTAGVGNDARGFRYFN 410
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------------GGSYIEQIVSLK 545
I KQ+Q+YD EG+YV +WLP L+++P + + P G Y I+ L
Sbjct: 411 ILKQSQDYDPEGKYVKHWLPALQSVPTVKVHTPWKLLEIEQERSQIRIGKDYPAPILDLD 470
Query: 546 HGNINQNRNQNDSLTRTGRRNNFKGKHAQVNR 577
H ++ N+ +S G+ + K + R
Sbjct: 471 H-SVKVNQKAYNSACAIGQNSKSSNKRSNFRR 501
>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 498
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/509 (48%), Positives = 329/509 (64%), Gaps = 31/509 (6%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
+ V I+W+RNDLR+ D+E L KA + ++P+YC+DPR T FGFPKTG RA+FL
Sbjct: 3 QNVIILWYRNDLRIHDHEPLYKALKVNAQIIPIYCLDPRQFSQT-DFGFPKTGVFRAKFL 61
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+E +ADLR NL G NL+I KPE +IP LA+ A +V+ +E E+ VERLV +
Sbjct: 62 LESIADLRNNLQKLGSNLVIFQDKPEIVIPRLAQQLSAKSVFFHQEVTELEVKVERLVHQ 121
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L+Q+ + +LK WG T+YH DD+PF+ LP+++T FRK +E +V
Sbjct: 122 ALKQIGV------------RLKSFWGHTLYHPDDLPFEIKQLPELFTTFRKDVEKNSSVN 169
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKV-SKG-MRFVGGESAALGRVNEYFWKK 317
IP P + D G +P + L L P + S+G + F GGE+AA RV YFW++
Sbjct: 170 PTFSIPKKLSSLPKI-DVGELPTLSDLNLEKPPLNSQGVLEFKGGETAAKERVKNYFWQQ 228
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
D LKVYKETRN MLG +YS+KFSPWLA G +SPRYIYEEVK YE +RV N STYW++FEL
Sbjct: 229 DYLKVYKETRNGMLGANYSSKFSPWLALGCLSPRYIYEEVKEYEYQRVKNQSTYWLIFEL 288
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYFRFI K+GN +FH G + + W +D + F W+ G TG+PL+DANM+EL T
Sbjct: 289 IWRDYFRFICQKHGNKIFHKSGLQGIAIPWQEDWEKFRKWQAGQTGFPLVDANMRELLAT 348
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ SFL +++GI+W+MGAEWFE+ L+DYD CSN+GNW Y AGVGND R R
Sbjct: 349 GFMSNRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDGRGFR 408
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQL------------KALPKERRNFP---GGSYIEQIV 542
YF+IPKQA++YD EG+YV +WLP+L K LP E+ F G Y E I+
Sbjct: 409 YFNIPKQAKDYDPEGKYVKHWLPELGKVPPAKVHEPWKLLPVEQDRFGVKIGVDYPEPII 468
Query: 543 SLKHGNINQNRNQNDSLTRTGRRNNFKGK 571
L + N +L T + N +G+
Sbjct: 469 DLWQSVKENEKKYNRALQMTLGKINKRGR 497
>gi|307153163|ref|YP_003888547.1| DASH family cryptochrome [Cyanothece sp. PCC 7822]
gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
Length = 495
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/452 (51%), Positives = 320/452 (70%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+RNDLR+ D+E L KA ++P YC D R + T +GFPKTG RAQFL+E L
Sbjct: 7 LIWYRNDLRLHDHEPLNKALKEKAEIIPFYCFDERQFRKT-SYGFPKTGNFRAQFLLESL 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADL+K+L RG +L+IR G PE+IIP LA+ AVY +E +EEL VE+ + L +
Sbjct: 66 ADLKKSLQERGSDLIIRKGLPEKIIPQLAQELKLTAVYYHQEVTAEELAVEKALESGLNK 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + ++S WG T+YH D++PF + +P+++T+FRK +E TV +
Sbjct: 126 IRVKTES------------FWGATLYHPDNLPFKIAHIPELFTNFRKKVEKASTVDPILP 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLLK 321
P S P P++ + G++P + L L +P + ++F GGE+AAL R+ EYFW+K+ LK
Sbjct: 174 TPKSLSPLPAI-EIGTLPDLAALGLETPIFDQRGVLKFRGGETAALERLEEYFWQKNCLK 232
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN MLG DYS+KFSPWLASG ISPRYIYE V+ YE++RV NDSTYW++FEL+WRD
Sbjct: 233 SYKETRNGMLGGDYSSKFSPWLASGCISPRYIYEAVQKYEQQRVKNDSTYWLIFELLWRD 292
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI K+GN +F+ G + L+ W +D + F+ W++G TGYPL+DANM+EL+ TGFMS
Sbjct: 293 YFRFICAKHGNKIFYPSGLQGLDLPWKEDWQRFQLWQEGKTGYPLVDANMRELAATGFMS 352
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++G++W MGAEWFE+ L+DYD CSNYGNW Y AGVGND R RYF+I
Sbjct: 353 NRGRQNVASFLTKNLGLNWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARGFRYFNI 412
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
PKQ+++YD GEY+ +WLP+L A+P ++ + P
Sbjct: 413 PKQSKDYDPLGEYLRHWLPELAAVPGDKIHEP 444
>gi|218245570|ref|YP_002370941.1| DASH family cryptochrome [Cyanothece sp. PCC 8801]
gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
Length = 488
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/452 (50%), Positives = 315/452 (69%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+RNDLR+ D++ + +A ++P YC D R +TT FGFPKTG ++QFL++ +
Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKQKAQIIPFYCFDNRQFKTT-SFGFPKTGNFKSQFLLQSI 67
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+LRKNL G NL++R G PE+IIP + K AVY +E SEE+ VE + K L Q
Sbjct: 68 DNLRKNLQQLGSNLVVRRGYPEKIIPEICKELAIDAVYFHQEVTSEEIKVETALEKALTQ 127
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + QL WGTT+YH DD+PF + +P+++T+FRK +E K +
Sbjct: 128 MGV------------QLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINSTFP 175
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKV-SKG-MRFVGGESAALGRVNEYFWKKDLLK 321
P P++ D G++P + +L L +P+ S+G + F+GGES + R+N+YFW+K+ LK
Sbjct: 176 TPKKLPSLPNL-DLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLK 234
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRNEMLG DYS+KFSPWLA G +SPRYIYEEV YE ERV NDSTYW++FEL+WRD
Sbjct: 235 DYKETRNEMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELERVKNDSTYWLIFELLWRD 294
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI K+GN +F+ G + L W +D + F+ W+ G TGYPL+DANM+EL+ TGFMS
Sbjct: 295 YFRFICAKHGNKVFYSSGLQGLNLPWKEDWQRFQLWQTGNTGYPLVDANMRELAATGFMS 354
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI+W MGAEWFE+ L+DYD CSNYGNW Y AGVGND R RYF+I
Sbjct: 355 NRGRQNVASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARGFRYFNI 414
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
PKQ+++YD +G Y+ +WLP+LK +P ++ + P
Sbjct: 415 PKQSKDYDPKGNYLRHWLPELKTIPGDKIHEP 446
>gi|405958349|gb|EKC24485.1| Eukaryotic translation initiation factor 2-alpha kinase 4
[Crassostrea gigas]
Length = 1998
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/463 (50%), Positives = 309/463 (66%), Gaps = 28/463 (6%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQF 138
GK + I FRNDLR+ DNE L A +++ VLP+Y DPRH TYHFGFPKTG R +F
Sbjct: 5 GKTI-ICLFRNDLRIHDNEVLQWANRNADFVLPMYIFDPRHFGGTYHFGFPKTGPHRTKF 63
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG---AHAVYAQKETCSEELNVER 195
L+E + DLRKNL RG L +R GKP E + + G H+V +E EEL+VE+
Sbjct: 64 LLESIQDLRKNLKIRGSGLAVRKGKPHEELKKMIDMLGQSSVHSVVFHEEVTQEELDVEK 123
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
++K+ +K WG T+YH +D+PF S PDVYT FRK +E++
Sbjct: 124 SIKKHCG---------------VNIKTFWGHTLYHREDLPFSPSQTPDVYTQFRKRVESQ 168
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS--KGMRFVGGESAALGRVNEY 313
VR C+ +P SF P P V+ G +P + L + P + F+GGES A+ R++ Y
Sbjct: 169 APVRKCLDMPKSFRPLPEGVEEGEIPTNKDLGVEDPVTDPRSVVDFLGGESVAIDRLHHY 228
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
W+ D + YKETRN +LG DYSTKFS WLA GS+SPR+I+ EVK YE ER +N+STYWV
Sbjct: 229 LWETDAIATYKETRNGLLGADYSTKFSVWLALGSLSPRHIFWEVKRYENERTSNNSTYWV 288
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
LFEL+WRDYFR++++KYGN +F+ GG + +W QD++LF +W++G TG P +DANM+E
Sbjct: 289 LFELIWRDYFRYVAMKYGNQIFYEGGIQNKNIRWKQDKQLFRAWKEGKTGVPFVDANMRE 348
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TGFMSNRGRQ SFL +D+ +DWR+GAEWFE+ LLD+D CSNYGNW Y AG+GNDP
Sbjct: 349 LAATGFMSNRGRQNVASFLTKDLHLDWRLGAEWFESMLLDHDVCSNYGNWLYSAGIGNDP 408
Query: 494 REDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGS 536
REDR F++ KQ +YD EG+YV W+P+LK N GGS
Sbjct: 409 REDRKFNVVKQGFDYDSEGDYVRTWVPELK-------NVHGGS 444
>gi|257058615|ref|YP_003136503.1| DASH family cryptochrome [Cyanothece sp. PCC 8802]
gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
Length = 488
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/452 (50%), Positives = 313/452 (69%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+RNDLR+ D++ + +A ++P YC D RH +TT FGFPKTG R+QFL++ +
Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKKKAQIIPFYCFDDRHFKTT-SFGFPKTGNFRSQFLLQSI 67
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+LRKNL G NL+IR G PE+IIP + + AVY +E SEE+ VE + K L Q
Sbjct: 68 DNLRKNLQQLGSNLVIRRGYPEKIIPEICQELAIDAVYFHQEVTSEEIKVETALEKALTQ 127
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + +L WGTT+YH DD+PF + +P+++T+FRK +E K +
Sbjct: 128 MGV------------KLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINSTFP 175
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKV-SKG-MRFVGGESAALGRVNEYFWKKDLLK 321
P P++ D G++P + +L L +P+ S+G + F+GGES + R+N+YFW+K+ LK
Sbjct: 176 TPKKLPSLPNL-DLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLK 234
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN MLG DYS+KFSPWLA G +SPRYIYEEV YE ERV NDSTYW++FEL+WRD
Sbjct: 235 DYKETRNGMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELERVKNDSTYWLIFELLWRD 294
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI K+GN +F+ G + W +D + F+ W+ G TGYPL+DANM EL+ TGFMS
Sbjct: 295 YFRFICAKHGNKVFYSSGLQGFNLPWKEDWQRFQLWQTGNTGYPLVDANMTELAATGFMS 354
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI+W MGAEWFE+ L+DYD CSNYGNW Y AGVGND R RYF+I
Sbjct: 355 NRGRQNVASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARGFRYFNI 414
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
PKQ+++YD +G Y+ +WLP+LK +P ++ + P
Sbjct: 415 PKQSKDYDPKGNYLRHWLPELKTIPGDKIHEP 446
>gi|410909117|ref|XP_003968037.1| PREDICTED: cryptochrome DASH-like [Takifugu rubripes]
Length = 521
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/452 (50%), Positives = 302/452 (66%), Gaps = 16/452 (3%)
Query: 78 NGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQ 137
+G I RNDLR+ DNE A +++ ++P+YC DPRH TYH+ PKTG R +
Sbjct: 2 SGPRTVICLLRNDLRLFDNELFHWAQRNADHIVPLYCFDPRHYMGTYHYNLPKTGPFRLR 61
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
FL+E + DLR L+N+G NL++R GKPEE++ SL K G+ + A +E SEEL+VE+
Sbjct: 62 FLLESIKDLRNTLLNKGSNLIVRRGKPEEVVASLIKQLGSVSTVAFHEEVTSEELDVEKR 121
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAK 255
V+ Q+ ++ + WG+T+YH DD+PF H S LPDVYT FRK++E++
Sbjct: 122 VKDVCAQMKVNVHT------------CWGSTLYHRDDLPFHHISRLPDVYTQFRKAVESQ 169
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF--VGGESAALGRVNEY 313
C VR P P P ++ G++ E LE P F GGES AL R+ Y
Sbjct: 170 CRVRPVFPPPEHLKPLPQGLEEGTILTAEDLEQKEPVADPRSAFPCSGGESQALARLKHY 229
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
FW D + VYKETRN ++G DYSTKFSPWLA G ISPRYIY ++K YE ER AN STYWV
Sbjct: 230 FWDTDAVAVYKETRNGLIGVDYSTKFSPWLALGCISPRYIYHQIKQYESERTANQSTYWV 289
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
+FEL+WRDYFRF+++KYG LF + G + W +D KLF +W++G TG P +DANM+E
Sbjct: 290 IFELLWRDYFRFVAVKYGTKLFQVNGLQDKSVSWRKDMKLFNAWKEGKTGVPFVDANMRE 349
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TGFMSNRGRQ SFL +D+G+DWRMGAEWFE L+D+D CSNYGNW Y AG+GNDP
Sbjct: 350 LATTGFMSNRGRQNVASFLTKDLGLDWRMGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDP 409
Query: 494 REDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
RE+R F++ KQ +YD GEYV W+P+L+ +
Sbjct: 410 RENRKFNMIKQGLDYDNNGEYVRLWVPELQRI 441
>gi|428779828|ref|YP_007171614.1| DASH family cryptochrome [Dactylococcopsis salina PCC 8305]
gi|428694107|gb|AFZ50257.1| cryptochrome, DASH family [Dactylococcopsis salina PCC 8305]
Length = 485
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/448 (51%), Positives = 315/448 (70%), Gaps = 17/448 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V ++W+RNDLRV D+E L +A + ++P YC D R T FGFPKTG RAQFL E
Sbjct: 5 VILIWYRNDLRVHDHEPLFRALQTQGQIIPFYCFDNREFGKT-AFGFPKTGGFRAQFLRE 63
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+A+LR+NL ++G NL+IR G+PE II L K V+ E +EE +VE+ + K L
Sbjct: 64 SVANLRENLQDKGSNLIIRCGQPETIISDLVKDLQITDVFFHSEVTAEETHVEKELEKKL 123
Query: 202 QQVVLSSQSNDKSTNHP-QLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
TN+ +L WG T+ HLDD+P LPDV+T +RK +E +R
Sbjct: 124 -------------TNYGVKLTSFWGATLDHLDDLPMTIDELPDVFTQYRKRVEKSSQIRA 170
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSP-KVSKG-MRFVGGESAALGRVNEYFWKKD 318
P S ++ G +P +E+L + +P K +G + F+GGESA + R++EY W++D
Sbjct: 171 SFPSPDRLPSLSSEINCGDLPTLEELGVKTPLKDERGVLNFIGGESAGIKRLSEYIWEED 230
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
LKVYKETRN MLG +YS+KFSPWLA G +SPRYIY++V++YE ERV N+STYW++FELM
Sbjct: 231 CLKVYKETRNGMLGANYSSKFSPWLARGCLSPRYIYDQVQTYEEERVKNNSTYWLIFELM 290
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRDYFRF+ LKYGNS+F+ G + ++ +W +D + F+ W++G TGYPL+DANM+E++ TG
Sbjct: 291 WRDYFRFVCLKYGNSVFYQTGLQGVQIQWKEDWERFKLWQEGKTGYPLVDANMREIAKTG 350
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
FMSNRGRQ SFL +++GIDWRMGAEWFE+ L+DYD CSN+GNW Y AGVGND R+ RY
Sbjct: 351 FMSNRGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARDFRY 410
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALP 526
F+IPKQ++NYD +G+Y+ +WLP+L+ +P
Sbjct: 411 FNIPKQSRNYDPKGDYLRHWLPELRKIP 438
>gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354552505|ref|ZP_08971813.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353555827|gb|EHC25215.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
Length = 491
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/452 (50%), Positives = 318/452 (70%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+RNDLR+ D+E + +A +++P+YC D R +TT +GFPKTG R QFL+E +
Sbjct: 12 LIWYRNDLRIHDHEPMYQAIKEGALIIPLYCFDIRQFKTT-SYGFPKTGNFRGQFLLESV 70
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A+LR++L + G NL++R G PE+IIP L K AVY +E SEE VE+ V++ L+
Sbjct: 71 ANLRQSLQDLGSNLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEETTVEKEVKQALKP 130
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + Q WG+T+YH DD+PF+ + LP+V+T FRK +E TV +
Sbjct: 131 LKVKVQG------------FWGSTLYHWDDLPFEVNQLPEVFTSFRKKVEKSSTVNPTLI 178
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKV-SKGM-RFVGGESAALGRVNEYFWKKDLLK 321
P P P++ + G +P +E+L L P S+GM F GGE+ + R+ EYFW+++ LK
Sbjct: 179 TPIKLLPFPNI-ELGKIPTLEELGLEKPDYHSRGMLNFKGGETGGIKRLKEYFWERNCLK 237
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN MLG DYS+KFSPWLA G +SPRYIYEEV+ YE RV N+STYW++FEL+WRD
Sbjct: 238 EYKETRNGMLGADYSSKFSPWLAQGCLSPRYIYEEVQKYEDARVKNNSTYWLIFELLWRD 297
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI K+GN +F+ G + L+ W +D++ F+ W++ TGYPL+DANM+E++ TGFMS
Sbjct: 298 YFRFICAKHGNKIFYESGLQGLDIPWKEDKERFKLWQESKTGYPLVDANMREIAATGFMS 357
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI+W MGAEWFE+ L+DYD CSNYGNW Y AGVGND R RYF+I
Sbjct: 358 NRGRQNVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARGFRYFNI 417
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
PKQ+++YD +G+Y+ +WLP+LK +P ++ + P
Sbjct: 418 PKQSKDYDPKGDYLRHWLPELKMIPGDKIHEP 449
>gi|432928263|ref|XP_004081133.1| PREDICTED: cryptochrome DASH-like [Oryzias latipes]
Length = 521
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/448 (50%), Positives = 305/448 (68%), Gaps = 16/448 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ I RNDLR+ DNE A +++ ++P+YC DPRH TY+F FPKTG R +FL++
Sbjct: 6 IVICLLRNDLRLHDNELFFWAQKNADHIVPLYCFDPRHYVGTYNFNFPKTGPFRLRFLLD 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA-HAVYAQKETCSEELNVERLVRKN 200
+ DLR L+++G NL++R GKPEE++ L K G+ +V +E SEELNVE+ V++
Sbjct: 66 SVRDLRNTLLSKGSNLVVRRGKPEEVVADLIKQLGSVSSVAFHEEVASEELNVEKKVKEV 125
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVR 259
Q+ + ++ WG+T++H DD+PF H + LPDVYT FRK++E+K VR
Sbjct: 126 CAQMEV------------KVHTCWGSTLFHRDDLPFPHMARLPDVYTEFRKAVESKSRVR 173
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF--VGGESAALGRVNEYFWKK 317
P P ++ G++P E LE P+ F GGES AL R+ YFW
Sbjct: 174 PVFPTPDRLNSLPPGLEGGAIPTAEDLEQTEPETDPRSAFPCSGGESQALARLKHYFWDT 233
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
D + YKETRN ++G DYSTKFSPWLA G ISPRYIY ++K YE+ER AN STYWV+FEL
Sbjct: 234 DAVATYKETRNGLIGVDYSTKFSPWLAMGCISPRYIYHQIKKYEQERTANQSTYWVIFEL 293
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYF+F+ +KYGN +F + G + W +D KLF++W++G TG P +DANM+EL+MT
Sbjct: 294 LWRDYFKFVGVKYGNKMFFIKGLQDKSLPWKRDTKLFDAWKEGRTGVPFVDANMRELAMT 353
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ SFL +D+G+DWRMGAEWFE L+D+D CSNYGNW Y AG+GNDPRE+R
Sbjct: 354 GFMSNRGRQNVASFLTKDLGLDWRMGAEWFEYLLIDHDVCSNYGNWLYSAGIGNDPRENR 413
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKAL 525
F++ KQA +YD G+YV W+P+L A+
Sbjct: 414 KFNMIKQALDYDSNGDYVRQWIPELTAV 441
>gi|428776804|ref|YP_007168591.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
gi|428691083|gb|AFZ44377.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
Length = 483
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/447 (51%), Positives = 307/447 (68%), Gaps = 15/447 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+RNDLRV D+E L +A + ++P YC D R T FGFPKTG+ RAQFL E +
Sbjct: 7 LIWYRNDLRVHDHEPLFRASKTQGQIIPFYCFDTREFGHT-GFGFPKTGSFRAQFLQESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A+LR+ L N G NL+IR G+PE IIP L + + E +EE+ VE+ + K LQ
Sbjct: 66 ANLRETLKNLGSNLMIRVGQPEIIIPELVTALNLTNLVYHAEVTAEEIRVEKALSKQLQS 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++ S WG+T++HLDD+P LPDV+T +RK IE +R C
Sbjct: 126 LGVTLTS------------YWGSTLHHLDDLPIKVDDLPDVFTQYRKRIEKTSEIRSCFP 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQL--ELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
P P PS + G +P +E L +L SP ++FVGGE A L R+ +Y W++D LK
Sbjct: 174 TPEKLPPLPSEIATGDLPNLETLGVKLVSPDERGVLKFVGGERAGLDRLKDYIWQEDCLK 233
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
VYK+TRN MLG + S+KFSPWLA G +SPRY+YEEV+SYE RV NDSTYW++FELMWRD
Sbjct: 234 VYKKTRNGMLGTNDSSKFSPWLARGCLSPRYVYEEVQSYEENRVKNDSTYWLIFELMWRD 293
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRF+ LKYGN++F+ G + ++ W +D + F W++G TGYPL+DANM+E++ TGFMS
Sbjct: 294 YFRFVCLKYGNAVFYQTGLQGVKIPWKEDWQQFTLWQEGKTGYPLVDANMREIATTGFMS 353
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GIDWRMGAEWFE+ L+DYD SN+GNW Y AGVGND RE RYF+I
Sbjct: 354 NRGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVSSNWGNWNYTAGVGNDAREFRYFNI 413
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKE 528
PKQ++ YD +G Y+ +WLP+L+ LP +
Sbjct: 414 PKQSKMYDPKGNYLRHWLPELRNLPGD 440
>gi|218437350|ref|YP_002375679.1| DASH family cryptochrome [Cyanothece sp. PCC 7424]
gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
Length = 488
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/453 (50%), Positives = 317/453 (69%), Gaps = 18/453 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++WFRNDLR+ D+EAL +A ++P YC D R +TT +GFPKTG RAQFL+E +
Sbjct: 7 LIWFRNDLRLHDHEALNEALQEKADIIPFYCFDERQFRTT-SYGFPKTGKFRAQFLLESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR++L G NL+IR G PE IIP +A+ A+Y +E +EEL VE+ ++K L +
Sbjct: 66 ADLRQSLQKLGSNLVIRQGLPELIIPQIAQPLNITALYYHEEVTAEELTVEKRLKKALAK 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ +S WGTT+YH D++PF+ LP+++T+FRK +E K TV +
Sbjct: 126 CNIKVES------------FWGTTLYHPDNLPFEIYQLPELFTNFRKQVERKSTVAPVLP 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG---MRFVGGESAALGRVNEYFWKKDLL 320
P S P P + D G++P + +L L P V + ++F GGE A R+ +Y W+K+ L
Sbjct: 174 APKSLPPLPDL-DIGNLPSLSELGLE-PAVFEPRGVLKFQGGEIAGRERLQDYIWQKNCL 231
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG DYS+KFSPWLA G +SPRYIYEEV+ YE +RV NDSTYW++FEL+WR
Sbjct: 232 KNYKETRNEMLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEHQRVKNDSTYWLIFELLWR 291
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRFI K+GN +F G + ++ W +D + F+ W++G TGYPL+DANM+EL+ TGFM
Sbjct: 292 DFFRFICAKHGNKIFFSQGLQGIDLPWKEDWQRFKLWQEGKTGYPLVDANMRELATTGFM 351
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GI+W MGAEWFE+ L+DYD CSNYGNW Y AGVGND R RYF+
Sbjct: 352 SNRGRQNVASFLTKNLGINWLMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARGFRYFN 411
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G+Y+ YWLP+L +P ++ + P
Sbjct: 412 IPKQSKDYDPKGDYLRYWLPELALVPGDKIHEP 444
>gi|443324015|ref|ZP_21052973.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
gi|442796190|gb|ELS05502.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
Length = 491
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/444 (50%), Positives = 305/444 (68%), Gaps = 16/444 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+R DLR+ D++ + +A ++P+YC D R T FGFPKTGA R+QFL+E +
Sbjct: 7 LIWYRRDLRLHDHKPMYQALQQEAQIIPLYCFDERQFAKT-SFGFPKTGAFRSQFLLEAV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR +L G NL++R G PE+IIPSLAK AVY E SEEL VE ++K L Q
Sbjct: 66 ADLRNSLSQLGSNLIVRRGLPEKIIPSLAKELEISAVYFHGEVTSEELAVEAALQKALSQ 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ +S +K WG T+YH DD+PF +P+++T+FRKS+E K +V
Sbjct: 126 IKIS------------VKRFWGNTLYHPDDLPFSIEQIPELFTNFRKSVEKKSSVASSFA 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLLK 321
+P P P + + G +P + L L +PK + F GGE+AAL R++ Y W D LK
Sbjct: 174 VPQELPPLPDI-NLGELPQLSDLGLEAPKFDSRAVLDFKGGETAALARLDSYIWSGDYLK 232
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK+TRN MLG DYS+KFSPWLA G +SPR IYE+V+ YE +RV NDSTYW++FEL+WRD
Sbjct: 233 DYKKTRNGMLGADYSSKFSPWLALGCLSPRLIYEQVQEYEAQRVKNDSTYWLIFELLWRD 292
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+F FI K+G+ +F G + + W +D F+ W++G TG+PL+DANM+EL+ TGFMS
Sbjct: 293 FFYFIGTKHGDRIFRQSGLQGITISWKEDWTRFKLWQEGKTGFPLVDANMRELATTGFMS 352
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI+W+MGAEWFE+CL+DYD CSN+GNW Y AGVGND R RYF+I
Sbjct: 353 NRGRQNVASFLTKNLGINWQMGAEWFESCLIDYDVCSNWGNWNYTAGVGNDARGFRYFNI 412
Query: 502 PKQAQNYDREGEYVAYWLPQLKAL 525
PKQ++NYD +GEY+ +WLP+L ++
Sbjct: 413 PKQSKNYDPQGEYLRHWLPELSSI 436
>gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
Length = 515
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/453 (49%), Positives = 307/453 (67%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+E L A + ++PVYC DPR T FGFPKTG RAQFL+E
Sbjct: 28 VLIWYRNDLRVHDHEPLHLAVKAQAEIIPVYCFDPRQFGKT-SFGFPKTGVFRAQFLLES 86
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ DLR +L G +L++R+ PE +IP L K G VY +E SEEL VE + K L
Sbjct: 87 VTDLRNSLRKLGSDLIVRYDFPETVIPELVKQLGIDEVYYYREVTSEELAVETTLEKALN 146
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ +S LK WG T+Y LDD+PF + +P+V+T FRK +E T+
Sbjct: 147 PLDVS------------LKSYWGATLYDLDDLPFSINRIPEVFTQFRKQVEKNGTIYASF 194
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + + G +P +++L L +P+ + ++F GGE+A + R+ +Y W++D L
Sbjct: 195 PTPQRLPILPQI-EVGELPTLQKLGLETPQFDQRSVLKFQGGETAGISRLTDYIWEQDCL 253
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YK+TRN MLG +YS+KFSPWLA G +SPR+IY+ V+ YE +RV NDSTYW++FEL+WR
Sbjct: 254 KDYKQTRNGMLGANYSSKFSPWLALGCLSPRFIYDHVQDYEEQRVKNDSTYWLVFELLWR 313
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
DYFRFI LK+GN +F L G + + W +D + FE WR G TG+PL+DANM+EL+ TGFM
Sbjct: 314 DYFRFICLKHGNKIFRLSGLQGVSIPWKEDWERFECWRTGTTGFPLVDANMRELAATGFM 373
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GI+W+MGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 374 SNRGRQNVASFLTKNLGINWKMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARGFRYFN 433
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQA++YD G+YV +WLP+L ALP + + P
Sbjct: 434 IPKQAKDYDSNGDYVKHWLPELAALPASKVHEP 466
>gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis]
gi|82239825|sp|Q75WS4.1|CRYD_XENLA RecName: Full=Cryptochrome DASH
gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis]
Length = 523
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/473 (49%), Positives = 313/473 (66%), Gaps = 19/473 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V I RNDLR+ DNE L A +++ ++P+YC DPRH T++F FPKTG R +FL+E
Sbjct: 7 VIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLE 66
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG-AHAVYAQKETCSEELNVERLVRKN 200
+ DLR L +G NLL+R GKPEE+I L K G AV +E EE +VE V++
Sbjct: 67 SVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQA 126
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVR 259
++ + Q+ WG+T+YH +D+PF H SSLPDVYT FRK++E + VR
Sbjct: 127 CTRLGIKYQT------------FWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVR 174
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF--VGGESAALGRVNEYFWKK 317
++P P PS ++ GSVP E + P F GGES AL R+ YFW+
Sbjct: 175 PTFQMPDKLKPLPSGLEEGSVPSHEDFDQQDPLTDPRTAFPCSGGESQALQRLEHYFWET 234
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+L+ YK+TRN ++G DYSTKF+PWLA G +SPRYIYE++ YE+ER AN STYWV+FEL
Sbjct: 235 NLVASYKDTRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGKYEKERTANQSTYWVIFEL 294
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYFRF++LKYG +F L G + + W +D KLF++W++G TG P +DANM+EL+MT
Sbjct: 295 LWRDYFRFVALKYGRRIFFLRGLQDKDIPWKRDPKLFDAWKEGRTGVPFVDANMRELAMT 354
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ SFL +D+GIDWRMGAEWFE L+DYD CSNYGNW Y AG+GNDPRE+R
Sbjct: 355 GFMSNRGRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPRENR 414
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNIN 550
F++ KQ +YD G+Y+ W+P+L+ + + P + SL H N++
Sbjct: 415 KFNMIKQGLDYDSGGDYIRLWVPELQQIKGGDAHTP---WALSNASLAHANLS 464
>gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax]
Length = 521
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/471 (48%), Positives = 307/471 (65%), Gaps = 19/471 (4%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I RNDLR DNE A ++E ++P+YC DPRH TY++ PKTG R +FL++ +
Sbjct: 8 ICLLRNDLRFQDNELFHWAQRNAEYIVPLYCFDPRHYVGTYNYNLPKTGPFRLRFLLDSI 67
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA-HAVYAQKETCSEELNVERLVRKNLQ 202
DLR L+++G NL++R GKPEE++ L K G+ AV +E SEELNVE+ V+
Sbjct: 68 RDLRNTLLSKGSNLVVRQGKPEEVVADLIKQLGSVSAVAFHEEVTSEELNVEKGVKDVCA 127
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRGC 261
Q+ + ++ WG+T+YH DD+PF H S LPDVYT FRK++E + VR
Sbjct: 128 QMKV------------KVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVETQSRVRPV 175
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF--VGGESAALGRVNEYFWKKDL 319
P P PS ++ G++P E L+ P F GGES L R+ YFW D
Sbjct: 176 FPTPEQLKPLPSGLEEGAIPTAEDLQQTEPLTDPRSAFPCSGGESQVLARLKHYFWDTDA 235
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
+ YKETRN ++G DYSTKF+PWLA G ISPRYIY ++K YE+ER AN STYWV+FEL+W
Sbjct: 236 VATYKETRNGLIGVDYSTKFAPWLAMGCISPRYIYHQIKQYEKERTANQSTYWVIFELLW 295
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYF+F+ +KYGN LF + G + W +D KLF +W++G TG P +DANM+EL+MTGF
Sbjct: 296 RDYFKFVGVKYGNRLFQVKGLQDKSIPWKKDMKLFNAWKEGQTGVPFVDANMRELAMTGF 355
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +D+G+DWRMGAEWFE L+D+D CSNYGNW Y AG+GNDPRE+R F
Sbjct: 356 MSNRGRQNVASFLTKDLGLDWRMGAEWFEYLLIDHDVCSNYGNWLYSAGIGNDPRENRKF 415
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNIN 550
++ KQ +YD G+YV W+P+L+ + + P + +L H +++
Sbjct: 416 NMIKQGLDYDSNGDYVRQWVPELQGIKGADVHTP---WTLSTAALSHAHVS 463
>gi|443320872|ref|ZP_21049947.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
gi|442789415|gb|ELR99073.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
Length = 485
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/450 (50%), Positives = 310/450 (68%), Gaps = 17/450 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+RNDLR+ D+E + +A V+PVYC DPR TT G KTG+ RAQFL E +
Sbjct: 5 LIWYRNDLRLEDHEPMYQALSQKAQVIPVYCFDPRQFGTT-GCGLVKTGSFRAQFLRESV 63
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
DLR NL G NL++R G PE IIP+LA+S AVY +E +EEL VE ++K L Q
Sbjct: 64 IDLRHNLQQLGSNLILRQGLPEVIIPALARSIAVDAVYFHQEVTAEELAVETALKKALAQ 123
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
++ QS WG T+YHLD++PF + LP+++T+FRK +E K + +
Sbjct: 124 SQITVQS------------FWGATLYHLDNLPFAPAQLPELFTNFRKEVERKAEIEPSLP 171
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVY 323
P P P + D G +P + ++ +P + F GGE A R+ YFW+KD L+ Y
Sbjct: 172 QPERLPPLPDI-DPGEIPELAEI---APDSRGVLNFKGGERAGKARLKSYFWEKDALRNY 227
Query: 324 KETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYF 383
KETRN MLGPDYS+KFSPWLA+G +SPRYIY +V+SYE +RV NDSTYW++FEL+WRD+F
Sbjct: 228 KETRNGMLGPDYSSKFSPWLANGCLSPRYIYAQVQSYETQRVKNDSTYWLVFELLWRDFF 287
Query: 384 RFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNR 443
RFIS K+ N +F G + +E W +D F+ W++G TGYPL+DANM+EL+ TGFMSNR
Sbjct: 288 RFISSKHKNRIFQPSGLQGIEIPWQEDPSRFKLWQEGKTGYPLVDANMRELAGTGFMSNR 347
Query: 444 GRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPK 503
GRQ SFL +++GI+W +GAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+IPK
Sbjct: 348 GRQNVASFLTKNLGINWILGAEWFESLLIDYDVCSNWGNWNYSAGVGNDARGFRYFNIPK 407
Query: 504 QAQNYDREGEYVAYWLPQLKALPKERRNFP 533
Q+++YD +G+Y+ +WLP+LK+LP ++ + P
Sbjct: 408 QSRDYDPQGKYLKHWLPELKSLPGDKIHEP 437
>gi|348503387|ref|XP_003439246.1| PREDICTED: cryptochrome DASH-like [Oreochromis niloticus]
Length = 521
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/448 (50%), Positives = 301/448 (67%), Gaps = 16/448 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
I RNDLR+ DNE A ++E ++P+YC DP H TY++ PKTG R +FL+E
Sbjct: 6 TVICLLRNDLRLHDNELFHWAQRNAEHIVPLYCFDPTHYVGTYNYSLPKTGPFRLRFLLE 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA-HAVYAQKETCSEELNVERLVRKN 200
+ DLR L+N+G NL++R GKPEE++ L + G+ +V +E SEELNVE+ V+
Sbjct: 66 GIRDLRNTLINKGSNLVVRRGKPEEVVADLIRQLGSVSSVAFHEEVTSEELNVEKRVKDV 125
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVR 259
Q+ + ++ WG+T+YH DD+PF H S LPDVYT FRK++E++ VR
Sbjct: 126 CAQMKV------------KVHTCWGSTLYHRDDLPFPHMSRLPDVYTQFRKAVESEGRVR 173
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV--GGESAALGRVNEYFWKK 317
P P P ++ G++P E L+ P F GGES AL R+ YFW
Sbjct: 174 PVFSTPEKLNPLPPGLEEGAIPTAEDLQQTEPVTDPRSAFPCGGGESQALARLKHYFWDT 233
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
D + YKETRN ++G DYSTKFSPWLA G ISPRYIY ++K YE+ER AN STYWV+FEL
Sbjct: 234 DAVATYKETRNGLIGVDYSTKFSPWLAMGCISPRYIYHQIKQYEKERTANQSTYWVIFEL 293
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYFRF+S+KYGN +F + G + W +D KLF++W++G TG P +DANM+EL+ T
Sbjct: 294 LWRDYFRFVSVKYGNRIFQVKGLQDKSVPWKKDMKLFDAWKEGRTGVPFVDANMRELAAT 353
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ SFL +D+G+DWRMGAEWFE+ L+D+D CSNYGNW Y AG+GNDPRE+R
Sbjct: 354 GFMSNRGRQNVASFLTKDLGLDWRMGAEWFESLLIDHDVCSNYGNWLYSAGIGNDPRENR 413
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKAL 525
F++ KQ +YD G+YV W+P+L+ +
Sbjct: 414 KFNMIKQGLDYDNNGDYVRGWVPELQNI 441
>gi|411119570|ref|ZP_11391950.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
gi|410711433|gb|EKQ68940.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
Length = 496
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/453 (50%), Positives = 313/453 (69%), Gaps = 17/453 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWD-SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+E L +A ++ +LPVYC+DPR T FGFPKTGA RAQFL+E
Sbjct: 7 LIWYRNDLRVADHEPLYQALRINASHILPVYCIDPRQFGQT-SFGFPKTGAFRAQFLLES 65
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LADLR++L G NL+IR G PE++IP L + F AV KE SEE+ VE + + L+
Sbjct: 66 LADLRRSLQQLGSNLIIRRGYPEQVIPELIQQFSISAVCYHKEVTSEEVIVEDALERALK 125
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + +L+ WG T+YH ++PFD S +P+++T FRK +E TV +
Sbjct: 126 PMGV------------ELRSFWGHTLYHPAELPFDISEIPELFTSFRKQVEKSVTVNSTL 173
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P++ + G +P + + L +P ++FVGGE+A R++ YFW++D L
Sbjct: 174 PAPKRLPALPAI-EPGEMPQLAEFNLKAPNFDSRAVLKFVGGETAGHNRLDYYFWQQDCL 232
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
KVYKETRN MLG DYS+KFSPWLA G +SPR IYE+V+ YE +RV NDSTYW++FEL+WR
Sbjct: 233 KVYKETRNGMLGADYSSKFSPWLALGCLSPRTIYEQVQQYEEQRVKNDSTYWLIFELLWR 292
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
DYFRFI K+G+ +F L G + + W +D + F WRDG TG+PL+DANM+EL+ TGFM
Sbjct: 293 DYFRFICAKHGDRIFRLSGLQGVPIPWKEDWQHFNLWRDGKTGFPLVDANMRELAATGFM 352
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GI+W+MGAEWFE+ L+DYD CSN+GNW Y AGVGND R R+F+
Sbjct: 353 SNRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRFFN 412
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
I KQA++YD +G YV WLP+L +LP ++ + P
Sbjct: 413 ITKQAKDYDPDGAYVKCWLPELASLPADKVHEP 445
>gi|428225294|ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
gi|427985195|gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
Length = 498
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/452 (50%), Positives = 306/452 (67%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++WFRNDLR+ D+E L +A + PVYC DPRH T +GFPKTGA RAQFL+E +
Sbjct: 7 LLWFRNDLRLHDHEPLQRALKQKTAIAPVYCFDPRHFGKT-PYGFPKTGAFRAQFLLESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR +L RG +L++R GKPEE++P++A+ GA AVY +E +EE+ VE + + L+
Sbjct: 66 ADLRASLQKRGSDLIVRVGKPEEVVPAIARDLGATAVYFHEEATAEEIAVEERLIQALK- 124
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
D+ T H + WG T+Y DD+PF +P+V+T FRK +E++ VR
Sbjct: 125 --------DQGTAH---QSFWGATLYAPDDLPFGTDEIPEVFTQFRKRVESQSDVRSPFA 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLLK 321
P + P + G +P + L L P K + F GGE+A L R+ YFW+ D L
Sbjct: 174 SPKAL-PALGAIALGELPTLADLGLEPPSPDKRGVLAFRGGETAGLARLQHYFWQSDRLS 232
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
VYKETRN MLG DYS+KFSPWLA G +SPRYI+++V +YE +R ANDSTYW++FEL+WRD
Sbjct: 233 VYKETRNGMLGADYSSKFSPWLALGCLSPRYIHDQVLTYEDDRTANDSTYWLIFELLWRD 292
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI LK+GN +F G + +E W +D FE W G TG+PL+DANM+EL+ TGFMS
Sbjct: 293 YFRFICLKHGNQIFRAAGLQGVEIPWKEDWPRFELWTRGETGFPLVDANMRELAATGFMS 352
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI W MGAEWFE+ L+DYD CSN+GNW Y AGVGND R R+F+I
Sbjct: 353 NRGRQNVASFLTKNLGIHWHMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRFFNI 412
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
KQ+++YD +G YV +WLP+L +P + + P
Sbjct: 413 LKQSKDYDPDGRYVKHWLPELADVPGAKVHEP 444
>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
Length = 486
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/452 (50%), Positives = 316/452 (69%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+RNDLR+ D+E L + ++V+P YC D R QTT + FPKTG R QFL+E +
Sbjct: 7 LIWYRNDLRIHDHEPLYQGIKEGDLVIPFYCFDIRQFQTT-SYAFPKTGNFRGQFLLESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A+LR++L + G +L++R G PE+IIP L K AVY +E SEE VE+ V++ L+
Sbjct: 66 ANLRQSLQDLGSDLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEETKVEKKVKQALKP 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + ++ WG T+YH +D+PF+ + LP+V+T FRK +E TV +
Sbjct: 126 LKV------------KVPGFWGATLYHWNDLPFEVNQLPEVFTSFRKKVEKNSTVNPTLI 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELH-SPKVSKG-MRFVGGESAALGRVNEYFWKKDLLK 321
P P V + G++P +E+L L S S+G + F GGE+A + R+ +YFW+++ LK
Sbjct: 174 TPRKLLSLPDV-EIGNIPSLEELGLKKSDSDSRGVLNFKGGETAGIKRLQDYFWERNCLK 232
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN MLG DYS+KFSPWLA G +SPRYIYEEV+ YE ERV N+STYW++FEL+WRD
Sbjct: 233 EYKETRNGMLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEEERVKNNSTYWLIFELLWRD 292
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI K+GN +F+ G + L+ W +DQ F W++G TGYPL+DANM+E++ TGFMS
Sbjct: 293 YFRFICAKHGNKIFYKSGLQGLDIPWKEDQDRFILWQEGKTGYPLVDANMREIAATGFMS 352
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI+W MGAEWFE+ L+DYD CSNYGNW Y AGVGND R RYF+I
Sbjct: 353 NRGRQNVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARGFRYFNI 412
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
PKQ+++YD +G+Y+ +WLP+LK +P ++ + P
Sbjct: 413 PKQSKDYDSKGDYLRHWLPELKMIPGDKIHEP 444
>gi|428769113|ref|YP_007160903.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
gi|428683392|gb|AFZ52859.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
Length = 491
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/455 (50%), Positives = 317/455 (69%), Gaps = 17/455 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLK-AWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
A++WFRNDLR+ D+ L + A + ++P YC D R QTT FGF KTG RA+FLI
Sbjct: 9 TALIWFRNDLRIHDHAILARIAEGDYQRIIPFYCFDDRQFQTT-SFGFAKTGKYRAKFLI 67
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
E +ADLR++L G +L++R G PE+IIP +AK + Y +E EE+ VE+ + K
Sbjct: 68 ESVADLRESLQKLGTDLIVRKGIPEQIIPDIAKQYNVTEFYFSQEATEEEIKVEKRLIKA 127
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L+Q+ H Q+K W +T+Y DD+PF +LPD++THFRK IE K V
Sbjct: 128 LKQL------------HIQVKSCWQSTLYQPDDLPFSIENLPDLFTHFRKQIEKKSIVEE 175
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK--GMRFVGGESAALGRVNEYFWKKD 318
C P PP +D G++P++ L L + +VS+ + F GGE+ A+ R+ YFW+KD
Sbjct: 176 CFETPKK-LPPIPPIDTGNIPILSDLGLENFEVSQLAVLPFKGGETEAIKRLKSYFWEKD 234
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
LKVYKETRN MLG DYS+KFSPWLA G +SPRYIYEEV+ YE+ERV NDSTYW++FEL+
Sbjct: 235 CLKVYKETRNGMLGGDYSSKFSPWLALGCLSPRYIYEEVEKYEQERVKNDSTYWLIFELL 294
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRD+FRF ++KYGN LF+ G + + W ++ +FE+W +G TGYPLIDANM+EL TG
Sbjct: 295 WRDFFRFTAVKYGNRLFYPSGIQNISIPWQENWLIFEAWCEGQTGYPLIDANMRELKTTG 354
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
FMSNRGRQ SFL +++GI+W+MGAEWFE+ L+DYD CSN+GNW Y AG+GND R RY
Sbjct: 355 FMSNRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGIGNDARGFRY 414
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
F+IPKQ+++YD G+Y+ +WLP++ ++ ++ + P
Sbjct: 415 FNIPKQSKDYDYRGDYLRHWLPEIASIRGDKIHEP 449
>gi|434399467|ref|YP_007133471.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
gi|428270564|gb|AFZ36505.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
Length = 488
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 223/452 (49%), Positives = 314/452 (69%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++WFRNDLR+ D++ + +A ++PVYC D R + T FGFPKTG RAQFL+E +
Sbjct: 7 LIWFRNDLRLHDHKPIYQAVQEQAQIIPVYCFDQREFKQT-SFGFPKTGNYRAQFLLESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADL+K+L G +L+I G PE+IIP LA+ +VY +E +EEL VE+ +++ LQ+
Sbjct: 66 ADLKKSLQKLGSDLIIYWGFPEQIIPHLAQKLKIDSVYYHQEVTAEELKVEQALKQELQK 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + Q+ WG T+Y +D+PF+ S +P++YT+FRK +EAK T+ +
Sbjct: 126 LKI------------QVNSFWGATLYLTEDLPFEISQIPELYTNFRKQVEAKSTIENPLP 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLLK 321
P PS+ + G +P I L L +P K + F GGE+ AL R+N+YFW+ D LK
Sbjct: 174 TPKELPSLPSI-ELGQIPQISDLGLTTPIFDKRAVLNFKGGETEALTRLNQYFWQLDCLK 232
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN MLG +YS+KFSPWLA G ISPRYIYE+V+ YE +R+ NDSTYW++FEL+WRD
Sbjct: 233 EYKETRNGMLGANYSSKFSPWLARGCISPRYIYEQVQKYETKRIKNDSTYWLIFELIWRD 292
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+F FI K+GN +F+ G + ++ W +D K F W++G TGYPL+DANM+EL+ TGFMS
Sbjct: 293 FFHFICAKHGNKIFYQSGLQGIDIPWKEDWKRFNLWQEGKTGYPLVDANMRELAATGFMS 352
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI+W++GAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+I
Sbjct: 353 NRGRQNVASFLTKNLGINWQIGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARGFRYFNI 412
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
PKQ++ YD +G+Y+ +WLP+L +P + + P
Sbjct: 413 PKQSKYYDPKGDYLRHWLPELALIPGSKIHEP 444
>gi|390440296|ref|ZP_10228639.1| Cryptochrome DASH [Microcystis sp. T1-4]
gi|389836306|emb|CCI32765.1| Cryptochrome DASH [Microcystis sp. T1-4]
Length = 485
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/460 (49%), Positives = 307/460 (66%), Gaps = 16/460 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+EA+ +A ++P YC D R T +GFPKTG RA+FL+E
Sbjct: 3 VLIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFT-SYGFPKTGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ADLR++L + G NL+IR GKPEE+IP L + VY +E +EEL VE+ V K L
Sbjct: 62 VADLRQSLESLGGNLIIRRGKPEELIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ Q+K W T+YH DD+PF LP+++T+FRK +E +R
Sbjct: 122 GFPV------------QIKTFWTATLYHPDDLPFTIHQLPELFTNFRKQVERHWEIRTTY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + DWG++P++ L L P + +G + F GGE A RV EY W D L
Sbjct: 170 PTPKKLTKLPKI-DWGNLPILNDLGLTEPILDQGGVLSFQGGEMAGKSRVKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEVK YE+ RV NDSTYW++FEL+WR
Sbjct: 229 KTYKETRNEMLGTNYSSKFSAWLSCGCLSPRYIYEEVKKYEQTRVKNDSTYWLIFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRFI K+GN +F+ G +KL W +D + F W +G TGYPL+DANM+EL TGFM
Sbjct: 289 DFFRFICSKHGNKIFYQSGLQKLNLSWLEDWERFNLWCEGKTGYPLVDANMRELGATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDWR+GAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLTKNLGIDWRLGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQ 540
IPKQ+++YD +G+Y+ +WLP+L + ++ + P + E+
Sbjct: 409 IPKQSRDYDPKGDYLRHWLPELALIKGDKIHEPYKLFPEE 448
>gi|428203429|ref|YP_007082018.1| DASH family cryptochrome [Pleurocapsa sp. PCC 7327]
gi|427980861|gb|AFY78461.1| cryptochrome, DASH family [Pleurocapsa sp. PCC 7327]
Length = 488
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/452 (49%), Positives = 310/452 (68%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+RNDLR+ DN+ + +A ++PVYC D R TY FGFPKTG RAQFL E +
Sbjct: 7 LIWYRNDLRIHDNKLIYQALKEKAQIIPVYCFDKRQFVQTY-FGFPKTGKFRAQFLRESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR +L G NL++R G PE+IIP+LA+ AVY +E SEEL VE+ ++K L Q
Sbjct: 66 ADLRNSLQKLGSNLIVRLGFPEKIIPALAQELNIDAVYYHEEVTSEELAVEKSLKKALSQ 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + S WG T+YH D++PF +P+++T+FRK +E K T+ +
Sbjct: 126 IGVKVNS------------FWGATLYHPDNLPFKIHQIPELFTNFRKQLEKKSTIDPTLP 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLLK 321
P P P V + G +P + +L + + ++F GGE+ L R++ YFW+KD L+
Sbjct: 174 SPQKLPPLPKV-EPGEIPQLLELGIEELIFDERAVLKFQGGETKGLVRLHNYFWEKDCLR 232
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN MLG DYS+KFSPWLA G +SPR IYE+V+ YE ER+ NDSTYW++FELMWRD
Sbjct: 233 TYKETRNGMLGLDYSSKFSPWLALGCLSPRLIYEQVQKYESERIKNDSTYWLVFELMWRD 292
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+FRFI K+GN +F G + L+ W +D K F+ W++G TGYPL+DANM+EL+ TGFMS
Sbjct: 293 FFRFICAKHGNRIFRKSGLQGLDIPWKEDWKRFQLWQEGKTGYPLVDANMRELAATGFMS 352
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI+W+MGAEWFE+ L+DYD CSNYGNW Y AGVGND R RYF++
Sbjct: 353 NRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARGFRYFNV 412
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
KQ+++YD +G+Y+ +WL +L +LP ++ + P
Sbjct: 413 LKQSKDYDSKGDYLRHWLLELASLPGDKIHEP 444
>gi|428217984|ref|YP_007102449.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
gi|427989766|gb|AFY70021.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
Length = 500
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 219/463 (47%), Positives = 308/463 (66%), Gaps = 26/463 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+W+RNDLR+ D+E L + + +P+YC DPR TT +GF KTGA RAQFL E +
Sbjct: 7 IIWYRNDLRIHDHEPLWTVAKAGAIAIPIYCFDPRQFATT-KYGFAKTGAFRAQFLTESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA--VYAQKETCSEELNVERLVRKNL 201
DLR L G +L++R+G+PE+I+P LA+ A+A +Y +E SEE VE + ++L
Sbjct: 66 LDLRDRLRQLGSDLIVRYGEPEQILPELAQKLNANANAIYYHQEVTSEETKVEAAIAQDL 125
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ +L+ WG T+YH DD+PF +P ++T FRK +E + T+
Sbjct: 126 ------------AATDIKLQAFWGHTLYHRDDLPFSMERIPAIFTKFRKQVEQEATINPA 173
Query: 262 IRIPS---------SFGPPPSVVDWGSVPLIEQLELH--SPKVSKGMRFVGGESAALGRV 310
+ +P+ + +D G +P + QL L +P + F GGE AA+ R+
Sbjct: 174 LPMPTELISFNDLNDLNEIDAPLDPGEIPSLAQLGLEPIAPDDRAAITFTGGEGAAIARL 233
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
++YFW+ D L+ YK+TRN MLG DYS+KFSPWLA G ISPRYI+E+V+ YE++RVANDST
Sbjct: 234 DQYFWQNDCLRTYKQTRNGMLGADYSSKFSPWLAHGCISPRYIFEQVQKYEQDRVANDST 293
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW++FEL+WRDYFRFI+ K+G+ LF+ G + L+ W +D F W +G TG+PLIDAN
Sbjct: 294 YWLVFELIWRDYFRFIAAKHGDRLFYKSGLQNLDLPWKKDSTRFAQWCEGKTGFPLIDAN 353
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M+EL+ TGFMSNRGRQ SFL +++GIDWR+GA WFE+ L+DYD CSN+GNW Y AGVG
Sbjct: 354 MRELAATGFMSNRGRQNVASFLTKNLGIDWRIGAAWFESLLIDYDVCSNWGNWNYSAGVG 413
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
ND R R+F+ KQA++YDR+G+Y +WLP+L +P + + P
Sbjct: 414 NDARGFRFFNTTKQARDYDRQGDYAKHWLPELAKIPASKVHEP 456
>gi|440756671|ref|ZP_20935871.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
gi|440172700|gb|ELP52184.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
Length = 485
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/453 (49%), Positives = 306/453 (67%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+EA+ +A ++P YC D R T +GFPKTG RA+FL+E
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFT-SYGFPKTGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+A+LR++L G NL+IR GKPEEIIP L + VY +E +EEL VE+ V K L
Sbjct: 62 VANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + Q+K W T+YH DD+PF + LP+++T+FRK +E +R
Sbjct: 122 IIPV------------QIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + DWG++P+++ L L + +G + F GGE A RV EY W D L
Sbjct: 170 PSPKKLTKLPKI-DWGNLPILKDLGLTELILDQGGVLSFQGGEVAGKSRVKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEV+ YE+ RV NDSTYW++FEL+WR
Sbjct: 229 KTYKETRNEMLGTNYSSKFSAWLSFGCLSPRYIYEEVQKYEQTRVKNDSTYWLIFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRFI K+GN +F+ G ++L W +D + F W +G TGYPL+DANM+EL+ TGFM
Sbjct: 289 DFFRFIGSKHGNKIFYKSGLQELNLPWLEDWQRFNLWCEGKTGYPLVDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDWRMGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLTKNLGIDWRMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G+Y+ +WLP+L + ++ + P
Sbjct: 409 IPKQSKDYDPKGDYLRHWLPELALIKGDKIHEP 441
>gi|425453111|ref|ZP_18832925.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|425461683|ref|ZP_18841157.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
gi|389764695|emb|CCI09167.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|389825403|emb|CCI24828.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
Length = 485
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/453 (49%), Positives = 306/453 (67%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+EA+ +A ++P YC D R T +GFPKTG RA+FL+E
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFT-SYGFPKTGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+A+LR++L G NL+IR GKPEEIIP L + VY +E +EEL VE+ V K L
Sbjct: 62 VANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + Q+K W T+YH DD+PF + LP+++T+FRK +E +R
Sbjct: 122 IIPV------------QIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + DWG++P+++ L L + +G + F GGE A RV EY W D L
Sbjct: 170 PSPKKLTKLPKI-DWGNLPILKDLGLTELILDQGGVLSFQGGEIAGKSRVKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEV+ YE+ RV NDSTYW++FEL+WR
Sbjct: 229 KTYKETRNEMLGTNYSSKFSAWLSFGCLSPRYIYEEVQKYEQTRVKNDSTYWLIFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRFI K+GN +F+ G ++L W +D + F W +G TGYPL+DANM+EL+ TGFM
Sbjct: 289 DFFRFICSKHGNKIFYKSGLQELNLPWLEDWQRFNLWCEGKTGYPLVDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDWRMGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLTKNLGIDWRMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G+Y+ +WLP+L + ++ + P
Sbjct: 409 IPKQSKDYDPKGDYLRHWLPELALIKGDKIHEP 441
>gi|97047702|sp|Q4KML2.2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
Short=zCRY-DASH
Length = 520
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/448 (48%), Positives = 298/448 (66%), Gaps = 16/448 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
I RNDLR+ DNE A ++E ++P+YC DPRH Q TYH+ FPKTG R +FL++
Sbjct: 6 TVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLLD 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERLVRKN 200
+ DLR L G LL+R GKPE+++ L K G+ + A +E SEE +VE +++
Sbjct: 66 SVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKEI 125
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVR 259
Q N +++ WG+T+YH DD+PF H LPDVYT FRK++EA+ VR
Sbjct: 126 CCQ------------NKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVR 173
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSP--KVSKGMRFVGGESAALGRVNEYFWKK 317
+ P PPS ++ G +P + L P GGE+ AL R+ YFW
Sbjct: 174 PVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDT 233
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ + YKETRN M+G D+STKFSPWLA G ISPRYIYE++K YE ER AN STYWV+FEL
Sbjct: 234 NAVATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTANQSTYWVIFEL 293
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYF+F++LKYGN +F++ G + W+ D K+F++W++G TG P +DANM+EL++T
Sbjct: 294 LWRDYFKFVALKYGNRIFYMNGLQDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALT 353
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ SFL +D+G+DWR+GAEWFE L+D+D CSNYGNW Y AG+GNDPRE+R
Sbjct: 354 GFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRENR 413
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKAL 525
F++ KQ +YD G+YV W+P+L+ +
Sbjct: 414 KFNMIKQGLDYDNNGDYVRQWVPELRGI 441
>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
Length = 520
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/448 (48%), Positives = 297/448 (66%), Gaps = 16/448 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
I RNDLR+ DNE A ++E ++P+YC DPRH Q TYH+ FPKTG R +FL++
Sbjct: 6 TVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLLD 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERLVRKN 200
+ DLR L G LL+R GKPE+++ L K G+ + A +E SEE +VE +++
Sbjct: 66 SVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKEI 125
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVR 259
Q N +++ WG+T+YH DD+PF H LPDVYT FRK++EA+ VR
Sbjct: 126 CCQ------------NKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVR 173
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSP--KVSKGMRFVGGESAALGRVNEYFWKK 317
+ P PPS ++ G +P + L P GGE+ AL R+ YFW
Sbjct: 174 PVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDT 233
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ + YKETRN M+G D+STKFSPWLA G ISPRYIYE++K YE ER AN STYWV+FEL
Sbjct: 234 NAVATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTANQSTYWVIFEL 293
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYF+F++LKYGN +F++ G + W D K+F++W++G TG P +DANM+EL++T
Sbjct: 294 LWRDYFKFVALKYGNRIFYMNGLQDKHVPWKTDMKMFDAWKEGRTGVPFVDANMRELALT 353
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ SFL +D+G+DWR+GAEWFE L+D+D CSNYGNW Y AG+GNDPRE+R
Sbjct: 354 GFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRENR 413
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKAL 525
F++ KQ +YD G+YV W+P+L+ +
Sbjct: 414 KFNMIKQGLDYDNNGDYVRQWVPELRGI 441
>gi|443477859|ref|ZP_21067672.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
gi|443016926|gb|ELS31485.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
Length = 497
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/456 (49%), Positives = 306/456 (67%), Gaps = 19/456 (4%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
+VWFRNDLR+ D E L A ++S+ V P YC DP H T FGF KTGA RA+FL
Sbjct: 7 LVWFRNDLRLHDCEILSLAAEASKRMNAEVFPFYCFDPYHFGKT-SFGFEKTGAFRAKFL 65
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
IE + DLR NL + +L++R GKPE I+P L + G ++Y Q+E +EE ++ER +
Sbjct: 66 IESVIDLRANLRSLNSDLIVRIGKPELILPELTQQLGLTSIYYQREIATEETSLERRLHS 125
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+ + Q+ D K WG T+ H DD+PF + LP+++THFRK +EA +R
Sbjct: 126 -----IFTKQNVD-------FKGFWGKTLIHCDDLPFAIAHLPELFTHFRKQVEANLIIR 173
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHS--PKVSKGMRFVGGESAALGRVNEYFWKK 317
+ P +D G +P + QL L P +F GGE+AA+ R+N YFW
Sbjct: 174 EPFPLVDRLPALPPSIDIGEIPHLTQLGLEEFLPCARAKFQFRGGETAAIERLNHYFWAS 233
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
D L+VYK+TRN ML D S+KFSPWLA G +SPRYIY ++K YE +R+ANDSTYW++FEL
Sbjct: 234 DRLQVYKQTRNGMLETDDSSKFSPWLALGCLSPRYIYAQIKKYESDRLANDSTYWLIFEL 293
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYF F++ KYGN LF G R ++ W Q+ ++F+ W+ G TG+PL+DANM+EL+ T
Sbjct: 294 LWRDYFHFVTAKYGNKLFGRKGLRGMDLPWQQNWRIFQLWQTGKTGFPLVDANMRELAAT 353
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ SFL +++GIDWRMGAEWFE+ L+DYDPC+N+GNW Y AG+GND R R
Sbjct: 354 GFMSNRGRQNVASFLTKNLGIDWRMGAEWFESRLIDYDPCNNWGNWNYTAGIGNDARGFR 413
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+F+I KQ+Q+YD +G YV YWLP+L A+P + + P
Sbjct: 414 FFNINKQSQDYDPQGTYVRYWLPELDAIPAAKVHQP 449
>gi|428213303|ref|YP_007086447.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
gi|428001684|gb|AFY82527.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
Length = 486
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/453 (48%), Positives = 316/453 (69%), Gaps = 18/453 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRH-SQTTYHFGFPKTGALRAQFLIEC 142
I+W+RNDLRV D+E L +A ++ ++P+YC DPR S+T Y GFPKTG RAQFL+E
Sbjct: 7 ILWYRNDLRVHDHEPLYRALETHAPIVPIYCFDPRQFSKTAY--GFPKTGPFRAQFLLES 64
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+A+LR++L N G NL+I+ GKPE I+P +A A A+Y +E +EE+ VE + + ++
Sbjct: 65 VANLRQSLQNLGSNLIIKIGKPEVILPQIAHQVNASAIYFHQEVTAEEIAVETALSQGVK 124
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ ++ LK WG T+YH D +PFD ++P+++THFRK +E T C
Sbjct: 125 SLNVA------------LKSFWGHTLYHCDRLPFDIPNIPELFTHFRKQVEKTATPDSCF 172
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P+ P P + + G++P + +L + ++ + F GGESA + R+ +YFW D L
Sbjct: 173 PTPTQLPPLPEI-ETGNLPNLTELGVEKVAIASKAVLPFTGGESAGIARMEDYFWTGDRL 231
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
+ YKETRN MLGPDYS+KFSPWL+ G +SPRYIY++V+ YE +R+ NDSTYW++FEL+WR
Sbjct: 232 RTYKETRNGMLGPDYSSKFSPWLSLGCLSPRYIYQQVQDYETQRIKNDSTYWLIFELLWR 291
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
DYFRFI K+GN++F G + + W +D + F W+ G TG+PL+DANM+EL+ TGFM
Sbjct: 292 DYFRFICAKHGNAIFRQSGLQGVTIPWEEDWQKFTLWQQGKTGFPLVDANMRELAATGFM 351
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GI+W+MGAEWFE+ L+DYD CSN+GNW Y AGVGND R R+F+
Sbjct: 352 SNRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRFFN 411
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
I KQ+++YD EG+YV +WLP+L A+P + + P
Sbjct: 412 IIKQSKDYDPEGDYVKHWLPELAAVPAAKVHEP 444
>gi|390942759|ref|YP_006406520.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
gi|390416187|gb|AFL83765.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
Length = 472
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/444 (50%), Positives = 296/444 (66%), Gaps = 17/444 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ D+ AL A + SE ++PVYC DPR + T + GF KTG RA+FL++ +
Sbjct: 7 LVWFRNDLRLHDHAALFSALEKSEEIIPVYCFDPRMFKET-NLGFRKTGNHRAKFLLQAV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L+ NL G NLLI HG PE++IP AK G A+Y +E SEE VE + +
Sbjct: 66 ENLKNNLQKVGSNLLILHGYPEDLIPQKAKELGVQAIYFSEEVTSEEKQVENALENAAYK 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + + S W T+++L+D+PF + P+++T FRK E VR
Sbjct: 126 LGIETAS------------FWQITLFNLEDLPFPVNQTPEIFTQFRKECEKFSKVRKTFP 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLLK 321
P + P ++WG P++ + L +P +S M F GGE + R+ YFWK D LK
Sbjct: 174 APKNIKSP--TIEWGDFPILSKYGLENPAISSQAVMVFEGGEDEGIRRLQTYFWKNDCLK 231
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN +LG DYS+KFSPWLA G +SPRYI+EEVK YE+ER N STYW++FEL+WRD
Sbjct: 232 TYKETRNGLLGADYSSKFSPWLALGCLSPRYIFEEVKRYEKERKKNQSTYWLIFELIWRD 291
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI+ K+GN +F + G + W++ +KLF+ W DG TG P IDANM+EL +GFMS
Sbjct: 292 YFRFIAKKHGNKIFQVSGIKNTVDNWNRSEKLFQKWTDGKTGIPFIDANMRELYSSGFMS 351
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQI SFLV D+ IDWR GA +FE+ L+DYD CSN+GNW Y AGVGNDPRE+RYF+I
Sbjct: 352 NRGRQIVASFLVNDLNIDWRWGAAYFESQLIDYDVCSNWGNWMYVAGVGNDPRENRYFNI 411
Query: 502 PKQAQNYDREGEYVAYWLPQLKAL 525
KQA NYDR+GEY+ +W+P+L +
Sbjct: 412 LKQAHNYDRKGEYIRHWIPELDPI 435
>gi|422304305|ref|ZP_16391652.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
gi|389790612|emb|CCI13529.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
Length = 485
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/453 (49%), Positives = 303/453 (66%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLR+ D+EA+ +A ++P YC D R T +GFPK+G RA+FL+E
Sbjct: 3 VLIWYRNDLRLHDHEAIYRAIQEQLEIIPFYCFDERQFGLT-SYGFPKSGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ADLR++L + G NL+IR GKPEEIIP L + VY +E +EEL VE+ V K L
Sbjct: 62 VADLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ Q+K W T+YH DD+PF + LP+++T+FRK +E +R
Sbjct: 122 GFPV------------QIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + DWG++P L L P + +G + F GGE A RV EY W D L
Sbjct: 170 PTPKKLTKLPKI-DWGNLPSFNDLGLTEPILDQGGVLSFQGGEMAGKSRVKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEV+ YE+ RV NDSTYW++FEL+WR
Sbjct: 229 KTYKETRNEMLGTNYSSKFSAWLSFGCLSPRYIYEEVQKYEQTRVKNDSTYWLIFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRFI K+GN +F+ G ++L W +D + F W +G TGYPL+DANM+EL+ TGFM
Sbjct: 289 DFFRFICSKHGNKIFYKSGLQELNLPWLEDWERFNLWCEGKTGYPLVDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDWR+GAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLTKNLGIDWRLGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G Y+ +WLP+L + ++ + P
Sbjct: 409 IPKQSKDYDPKGYYLRHWLPELDLIKGDKIHEP 441
>gi|443661557|ref|ZP_21132734.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332297|gb|ELS46914.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
Length = 485
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/453 (49%), Positives = 304/453 (67%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+EA+ +A ++P YC D R T +GFPKTG RA+FL+E
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFT-SYGFPKTGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+A+L+++L G NL+IR GKPEEIIP L + VY +E +EEL VE+ V K L
Sbjct: 62 VANLQQSLEGLGGNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V + Q+K W T+YH DD+PF + LP+++T+FRK IE +R
Sbjct: 122 GVPV------------QIKTFWTATLYHPDDLPFTVNQLPELFTNFRKQIERHWEIRTTY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + DWG++P + L L + +G + F GGE A RV EY W D L
Sbjct: 170 ASPKKLTKLPKI-DWGNLPSLNDLGLTELILDRGGVLSFQGGEMAGKSRVKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEV+ YE+ RV NDSTYW++FEL+WR
Sbjct: 229 KTYKETRNEMLGTNYSSKFSAWLSLGCLSPRYIYEEVQKYEQTRVKNDSTYWLIFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRFI K+GN +F+ G ++L W +D + F W +G TGYPL+DANM+EL+ TGFM
Sbjct: 289 DFFRFICSKHGNKIFYKSGLQELNLPWLEDWQRFNLWCEGKTGYPLVDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDWRMGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLTKNLGIDWRMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G+Y+ +WLP+L + ++ + P
Sbjct: 409 IPKQSKDYDPKGDYLRHWLPELALIKGDKIHEP 441
>gi|408673564|ref|YP_006873312.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
gi|387855188|gb|AFK03285.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
Length = 475
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/454 (50%), Positives = 303/454 (66%), Gaps = 17/454 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ WFRNDLR+ DNEAL++A + V+PVY D R T GF +TG RA+FLIE +
Sbjct: 5 LFWFRNDLRLHDNEALIQATKAGN-VIPVYIFDERQFINT-PLGFKRTGTFRAKFLIEAV 62
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+LR NL G NL+++ GKPEEI+ LA+ + A AVYA KE EE +E + K L+
Sbjct: 63 ENLRDNLQKIGSNLIVKVGKPEEILAQLAEKYEAVAVYASKEVTQEETIIEANLSKKLKP 122
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + +++L+W T+YH D+PF + LPDV+T FRK +E +R
Sbjct: 123 L------------NIEIELVWIATLYHARDLPFQINFLPDVFTEFRKKVERSAKIRRTFD 170
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLLK 321
P + VD G +P +E L PK K + F GGE++AL R++EY W KDL K
Sbjct: 171 APKTLPKVDKSVDLGEMPTLESLGYEKPKFDKRSVLAFRGGETSALYRLDEYIWDKDLPK 230
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN ++G DYSTKFS WL+ G ISPR IYEEVK YE+E AN+STYW++FEL+WRD
Sbjct: 231 TYKETRNGLVGGDYSTKFSAWLSLGCISPRTIYEEVKKYEKEVEANESTYWIIFELIWRD 290
Query: 382 YFRFISLKYGNSLFHLGGPRK-LEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
YF FI+LK+G +F G + L +W ++Q++FE W++G TG P IDANMKEL +TGFM
Sbjct: 291 YFHFIALKFGTRIFKQSGVKNDLMKQWKRNQEVFEKWKNGETGVPFIDANMKELKLTGFM 350
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ FL +D+GIDW GA +FE+ L+DYD CSN+GNW Y AGVGNDPREDRYF+
Sbjct: 351 SNRGRQNVACFLSKDLGIDWTWGAAYFESQLIDYDVCSNWGNWNYVAGVGNDPREDRYFN 410
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFPG 534
I +QA YD++GEYV WLP+L +P E+ +F G
Sbjct: 411 IGRQADMYDKDGEYVKLWLPELCKVPAEKVHFAG 444
>gi|425444341|ref|ZP_18824394.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
gi|389730294|emb|CCI05405.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
Length = 485
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/453 (49%), Positives = 303/453 (66%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+EA+ +A ++P YC D R T +GFPKTG RA+FL+E
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGLT-SYGFPKTGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+A+LR++L + G NL+IR GKPEEIIP L + VY +E +EEL VE+ V K L
Sbjct: 62 VANLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+V Q+K W T+YH DD+PF + LP+++T+FRK +E +R
Sbjct: 122 RV------------PAQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + DWG++P + L L P + + + F GGE A RV EY W D L
Sbjct: 170 PSPKKLTKLPKI-DWGNLPSLNDLGLTEPILDRRGFLSFQGGEMAGKSRVKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEV+ YE+ RV NDSTYW++FEL+WR
Sbjct: 229 KTYKETRNEMLGTNYSSKFSAWLSFGCLSPRYIYEEVQKYEQTRVKNDSTYWLIFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRFI K+GN +F+ G ++L W +D + F W G TGYPL+DANM+EL+ TGFM
Sbjct: 289 DFFRFICSKHGNKIFYKSGLQELNLPWLEDWQRFNLWCQGKTGYPLVDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDW MGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLTKNLGIDWCMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G+Y+ +WLP+L + ++ + P
Sbjct: 409 IPKQSRDYDPKGDYLRHWLPELALIKGDKIHEP 441
>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
Length = 520
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/448 (48%), Positives = 297/448 (66%), Gaps = 16/448 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
I RNDLR+ DNE A ++E ++P+Y DPRH Q TYH+ FPKTG R +FL++
Sbjct: 6 TVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYSFDPRHYQGTYHYNFPKTGPFRLRFLLD 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERLVRKN 200
+ DLR L G LL+R GKPE+++ L K G+ + A +E SEE +VE +++
Sbjct: 66 SVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQLGSVSTVAFHEEVASEEKSVEEKLKEI 125
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVR 259
Q N +++ WG+T+YH DD+PF H LPDVYT FRK++EA+ VR
Sbjct: 126 CCQ------------NKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVR 173
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSP--KVSKGMRFVGGESAALGRVNEYFWKK 317
+ P PPS ++ G +P + L P GGE+ AL R+ YFW
Sbjct: 174 PVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDT 233
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ + YKETRN M+G D+STKFSPWLA G ISPRYIYE++K YE ER AN STYWV+FEL
Sbjct: 234 NAVATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTANQSTYWVIFEL 293
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYF+F++LKYGN +F++ G + W+ D K+F++W++G TG P +DANM+EL++T
Sbjct: 294 LWRDYFKFVALKYGNRIFYMNGLQDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALT 353
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ SFL +D+G+DWR+GAEWFE L+D+D CSNYGNW Y AG+GNDPRE+R
Sbjct: 354 GFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRENR 413
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKAL 525
F++ KQ +YD G+YV W+P+L+ +
Sbjct: 414 KFNMIKQGLDYDNNGDYVRQWVPELRGI 441
>gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis]
Length = 525
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/449 (48%), Positives = 303/449 (67%), Gaps = 18/449 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+ RNDLR DNE L A ++ ++P+YC DPRH TYH+ FPKTG R +FL+E
Sbjct: 8 TALCLLRNDLRCHDNEVLHWAQSHADRIVPLYCFDPRHYAQTYHYNFPKTGPFRLRFLLE 67
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-VYAQKETCSEELNVER-LVRK 199
+ DLR+ L +G NL++R GKPE+++ L G+ A V +E EEL+VE+ L+R
Sbjct: 68 SVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLGSVASVSFHEEATKEELDVEKALIRV 127
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTV 258
+ V +++ WG+T+YH D+PF H S LPDVYT FRK++E++ V
Sbjct: 128 CTEHGV-------------EVQTFWGSTLYHRQDLPFKHISQLPDVYTQFRKAVESQARV 174
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV--GGESAALGRVNEYFWK 316
R +++ P ++ G++P +E + P F+ GGE+ AL R+ YFW+
Sbjct: 175 RPVLKMEGQMKSLPPEIEEGNIPSLEDFGMTEPLRDPRSAFLCSGGETQALMRLQHYFWE 234
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
+L+ YKETRN ++G DYSTKF+PWLA G ISPRYIY++++ YE+ER AN STYWVLFE
Sbjct: 235 TNLVASYKETRNGLIGLDYSTKFAPWLALGCISPRYIYDQIQKYEKERTANQSTYWVLFE 294
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L WRDYFRF++LKYG +F G + + W +D KLF++W++G TG P +DANM+EL+
Sbjct: 295 LAWRDYFRFVALKYGRKIFFPRGLQDKDISWKKDPKLFDAWKEGRTGVPFVDANMRELAT 354
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TGFMSNRGRQ SFL +D+G+DWRMGAEWFE+ L+DYD CSNYGNW Y AG+GNDPRE+
Sbjct: 355 TGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESLLVDYDVCSNYGNWLYSAGIGNDPREN 414
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R F++ KQA +YD G+Y W+P+L+ +
Sbjct: 415 RKFNMIKQALDYDGNGDYARLWVPELQCI 443
>gi|425437395|ref|ZP_18817812.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
gi|389677621|emb|CCH93442.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
Length = 485
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/453 (49%), Positives = 304/453 (67%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+EA+ +A ++P YC D R T +GFPKTG RA+FL+E
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFT-SYGFPKTGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+A+LR++L G NL+IR GKPEEIIP L + VY +E +EEL VE+ V K L
Sbjct: 62 VANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + Q+K W T+YH DD+PF + LP+++T+FRK +E +R
Sbjct: 122 IIPV------------QIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + DWG++P+++ L L + +G + F GGE A RV EY W D L
Sbjct: 170 PSPKKLTKLPKI-DWGNLPILKDLGLTELILDQGGVLSFQGGEIAGKSRVKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEV+ YE+ RV NDSTYW+ FEL+WR
Sbjct: 229 KTYKETRNEMLGTNYSSKFSAWLSFGCLSPRYIYEEVQKYEQTRVKNDSTYWLTFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRFI K+GN +F+ G ++L W +D + F W +G TGYPL+DANM+EL+ TGFM
Sbjct: 289 DFFRFICSKHGNKIFYKSGLQELNLPWLEDWQRFNLWCEGKTGYPLVDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDWRMGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLTKNLGIDWRMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
I KQ+++YD +G+Y+ +WLP+L + ++ + P
Sbjct: 409 IRKQSKDYDPKGDYLRHWLPELALIKGDKIHEP 441
>gi|383322099|ref|YP_005382952.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325268|ref|YP_005386121.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491152|ref|YP_005408828.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436419|ref|YP_005651143.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|97048023|sp|P77967.2|CRYD_SYNY3 RecName: Full=Cryptochrome DASH
gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|339273451|dbj|BAK49938.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|359271418|dbj|BAL28937.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274588|dbj|BAL32106.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277758|dbj|BAL35275.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958277|dbj|BAM51517.1| DNA photolyase [Bacillus subtilis BEST7613]
Length = 489
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/453 (49%), Positives = 302/453 (66%), Gaps = 14/453 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+VWFRNDLR+ D+E L +A S + VYC DPR T H GF KTG R+ FL +
Sbjct: 7 TVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQT-HQGFAKTGPWRSNFLQQ 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ +L ++L G LL+ G PE++IP +AK A +Y +E EEL+VER + K L
Sbjct: 66 SVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQL 125
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK-CTVRG 260
+ + + K WG+T+ H +D+PF LPD++T FRK IE K ++R
Sbjct: 126 TILGIEA------------KGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRP 173
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
C PS P P++ + P E + + F GGE+A L R+ +YFW D L
Sbjct: 174 CFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGDRL 233
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRN M+G DYS+KFSPWLA G +SPR+IY+EVK YE+ERV+NDST+W++FEL+WR
Sbjct: 234 KDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLIFELLWR 293
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRF++ KYGN LF+ GG + W +DQ FE WR G TGYPL+DANM+EL++TGFM
Sbjct: 294 DFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFM 353
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDWR GAEWFE+CL+DYD CSN+GNW Y AG+GND R+ RYF+
Sbjct: 354 SNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFN 413
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+Q YD +G Y+ +WLP+LK LP ++ + P
Sbjct: 414 IPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQP 446
>gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus
(Silurana) tropicalis]
Length = 523
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/472 (48%), Positives = 308/472 (65%), Gaps = 17/472 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V I RNDLR+ DNE L A +++ ++P+YC DPRH T++F FPKTG R +FL+E
Sbjct: 7 VIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYGGTHYFNFPKTGPHRLKFLLE 66
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ DLR L RG NLL+R GKPEEII L K G T EE+ V L N
Sbjct: 67 SVQDLRNTLKERGSNLLLRRGKPEEIIAGLVKQLGN----VSAVTLHEEVTVVPLYSYN- 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRG 260
++ + + + WG+T+YH +D+PF H SSLPDVYT FRK+ E + VR
Sbjct: 122 -PILWPPDWSGL-----RYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAAETQGKVRS 175
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF--VGGESAALGRVNEYFWKKD 318
++P P PS ++ GSVP + + P F GGE+ AL R++ YFW+ +
Sbjct: 176 TFQMPDRLKPLPSGLEEGSVPTHQDFDQQDPLTDPRSAFPCCGGETQALQRLHHYFWETN 235
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L+ YK+TRN ++G DYSTKF+PWLA G ISPRYIYE+++ YE+ER AN STYWV+FEL+
Sbjct: 236 LVASYKDTRNGLIGIDYSTKFAPWLALGCISPRYIYEQIRKYEKERTANQSTYWVIFELL 295
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRDYFRF++LKYG +F L G + + W +D KLF++W++G TG P +DANM+EL+MTG
Sbjct: 296 WRDYFRFVALKYGRRIFFLRGLQDKDVPWKKDPKLFDAWKEGRTGVPFVDANMRELAMTG 355
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
FMSNRGRQ SFL +D+ IDWR+GAEWFE L+DYD CSNYGNW Y AG+GNDPRE+R
Sbjct: 356 FMSNRGRQNVASFLTKDLXIDWRLGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPRENRK 415
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNIN 550
F++ KQ +YD G+Y+ W+P+L+ + + P + SL H N++
Sbjct: 416 FNMIKQGLDYDAGGDYIRLWVPELQQIKGGDAHTP---WALSTASLAHSNVS 464
>gi|434388808|ref|YP_007099419.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
gi|428019798|gb|AFY95892.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
Length = 503
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/452 (48%), Positives = 302/452 (66%), Gaps = 15/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+RNDLR+ D++ L +A ++P YC D R T FGFPKTG RAQFL+E +
Sbjct: 7 LIWYRNDLRLHDHQPLTQALKDGASIIPFYCFDDRQFGQT-SFGFPKTGGFRAQFLLESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
AD + + + G L+IR G EEIIP L + G VY +E EE+ V + L+
Sbjct: 66 ADFQHSYRSLGSELIIRRGLTEEIIPQLVEPLGITDVYYHQEVTPEEIAVSTALEAALKA 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V ++ +S WG T++ L D+PF ++P+++T+FRK +E K C+
Sbjct: 126 VNVNCRS------------FWGHTLHLLQDLPFTLPNVPELFTNFRKEVERKAPTPTCLP 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVS--KGMRFVGGESAALGRVNEYFWKKDLLK 321
P+S P +D G++P IE L + +P+ + + + GGE+A + R+NEY W++D L+
Sbjct: 174 APTSLPPLSVNIDPGTLPTIEDLRVTAPQPDSRRVLAYRGGETAGIDRLNEYIWERDRLR 233
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
VYKETRN MLG DYS+KFS WLA G +SPRYIY++VK YE ER+ NDSTYW++FEL+WRD
Sbjct: 234 VYKETRNGMLGADYSSKFSAWLALGCLSPRYIYQQVKKYEDERIENDSTYWLIFELLWRD 293
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI K+GN++F G + + W QD F+ WR+G TGYPL+DANM+E++ TG+MS
Sbjct: 294 YFRFICAKHGNNMFKRSGLQGVNLNWKQDWVRFDLWREGKTGYPLVDANMREIAATGYMS 353
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GIDWRMGAEWFE+ L+DYD CSN+GNW Y AGVGND R R F+I
Sbjct: 354 NRGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARVFRVFNI 413
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
KQ+ +YDREG YV +WLP+L +P + + P
Sbjct: 414 TKQSLDYDREGNYVKHWLPELAQVPAAKVHEP 445
>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
Length = 488
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/452 (50%), Positives = 313/452 (69%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+RNDLR+ D+E L +A + V+P YC D R TT FGFPKTGA RA+FL+E +
Sbjct: 7 LLWYRNDLRLHDHEPLHQALQTKAQVIPCYCFDDRLFHTT-SFGFPKTGAFRAKFLLESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR+N+ +RG NLL+R G PE +IP+LAK VY +E SEE+ VE ++ L +
Sbjct: 66 ADLRENVRSRGSNLLVRRGLPENVIPTLAKELDITTVYFHQEVTSEEVAVESALKNALSE 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++ Q+ WG+T+YH DD+PF+ +P+++T+FRK +E K T+
Sbjct: 126 IGITVQT------------FWGSTLYHPDDLPFNLLKIPELFTNFRKQVEKKSTIYPPFP 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLLK 321
P PSV + G +P + L SP + + F GGE+A L R+N+YFWKKD LK
Sbjct: 174 TPKRLPSLPSV-EVGELPQLADFGLESPIFDERAVLPFQGGETAGLARLNDYFWKKDCLK 232
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
VYK+TRN MLG DYS+KFSPWLA G +SPR+IYE+V+ YE+E++ NDSTYW++FEL+WRD
Sbjct: 233 VYKQTRNGMLGSDYSSKFSPWLALGCLSPRFIYEQVQQYEQEQIKNDSTYWLVFELIWRD 292
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+FRFI K+GN +F G + + W +D F W+ G TG+PLIDANM+EL+ TGFMS
Sbjct: 293 FFRFICAKHGNRIFRPSGLQGIPIPWKEDWDRFTLWQQGKTGFPLIDANMRELAATGFMS 352
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI+W++GAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+I
Sbjct: 353 NRGRQNVASFLTKNLGINWQIGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRYFNI 412
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
KQ+++YD +G YV +WLP+L +LP + + P
Sbjct: 413 QKQSKDYDPQGYYVKHWLPELNSLPAAKVHQP 444
>gi|425438643|ref|ZP_18818987.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
gi|389719600|emb|CCH96584.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
Length = 485
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/453 (49%), Positives = 303/453 (66%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+EA+ +A ++P YC D R T +GFPKTG RA+FL+E
Sbjct: 3 VLIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFT-SYGFPKTGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ADLR++L + G NL+IR GKPE+IIP L + VY +E +EEL VE+ V K L
Sbjct: 62 VADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V + Q+K W T+YH DD+PF + LP+++T+FRK +E +R
Sbjct: 122 GVPV------------QIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERYWQIRATY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + + G++P + L L + +G + F GGE A RV EY W D L
Sbjct: 170 PTPKKLTKLPKI-ELGNLPSLNDLGLTESILDRGGVLSFQGGEMAGKSRVKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEV+ YE+ RV NDSTYW++FEL+WR
Sbjct: 229 KTYKETRNEMLGTNYSSKFSAWLSFGCLSPRYIYEEVQKYEQTRVKNDSTYWLIFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRFI K+GN +F+ G ++L W +D + F W +G TGYPL+DANM+EL+ TGFM
Sbjct: 289 DFFRFICSKHGNKIFYKSGLQELYLPWLEDWERFNLWCEGKTGYPLVDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDW MGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLSKNLGIDWCMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G+Y+ +WLP+L + ++ + P
Sbjct: 409 IPKQSKDYDPKGDYLRHWLPELALIKGDKIHEP 441
>gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
Length = 485
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/453 (49%), Positives = 303/453 (66%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+EA+ +A ++P YC D R T +GFPKTG RA+FL+E
Sbjct: 3 VLIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFT-SYGFPKTGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ADLR++L + G NL+IR GKPE+IIP L + VY +E +EEL VE+ V K L
Sbjct: 62 VADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V + Q+K W T+YH DD+PF + LP+++T+FRK +E +R
Sbjct: 122 GVPV------------QIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRATY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + + G++P + L L + +G + F GGE A RV EY W D L
Sbjct: 170 PTPKKLTKLPKI-ELGNLPSLNDLGLTESILDRGGVLSFQGGEMAGKSRVKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEV+ YE+ RV NDSTYW++FEL+WR
Sbjct: 229 KTYKETRNEMLGTNYSSKFSAWLSFGCLSPRYIYEEVQKYEQTRVKNDSTYWLIFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRF+ K+GN +F+ G ++L W +D + F W +G TGYPL+DANM+EL+ TGFM
Sbjct: 289 DFFRFMCRKHGNKIFYKSGLQELYLPWLEDWERFNLWCEGKTGYPLVDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDW MGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLSKNLGIDWCMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G+Y+ +WLP+L + ++ + P
Sbjct: 409 IPKQSKDYDPKGDYLRHWLPELALIKGDKIHEP 441
>gi|359457825|ref|ZP_09246388.1| deoxyribodipyrimidine photolyase [Acaryochloris sp. CCMEE 5410]
Length = 484
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/446 (48%), Positives = 301/446 (67%), Gaps = 16/446 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++WFRNDLR+ D+ L +A S+ V+P YC DPR T FGFPKTG RAQFL+E
Sbjct: 3 VLIWFRNDLRLHDHAPLHQAVRSNADVIPCYCFDPRQFGLT-PFGFPKTGPFRAQFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ADLR++L + +L++R G PE ++P LA++ VY +E +EE+NVE +R L
Sbjct: 62 VADLRQSLRGKQSDLILRQGYPETVVPELAQALNVEVVYFNREVTAEEINVETRLRTALA 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + W +T++H + +PF LP+V+T FRK +E +
Sbjct: 122 DLGIECLR------------FWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPKAPF 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS--KGMRFVGGESAALGRVNEYFWKKDLL 320
P S P + D G +P +E L SPK+ M+F GGE+AAL R+ +Y W++D L
Sbjct: 170 PAPQSLSALPDI-DPGELPQLEDWGLSSPKLDPRAMMQFSGGETAALARLQDYIWEQDCL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRN ML P+ STKFSPW A G +SPRYI+++VK+YE+ERV N+STYW++FEL+WR
Sbjct: 229 KQYKETRNGMLQPNNSTKFSPWFALGCVSPRYIHQQVKAYEQERVKNNSTYWLIFELIWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
DYFRFI K+G +F L G + L W +++ FE W+ G TG+PLIDANM+EL+ TGFM
Sbjct: 289 DYFRFICAKHGKRVFRLSGLQGLALPWQDNRETFEKWQTGQTGFPLIDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++G++W+MGAEWFE+CL+DYD CSN+GNW Y AGVGND R R+F+
Sbjct: 349 SNRGRQNVASFLTKNLGLNWQMGAEWFESCLIDYDVCSNWGNWNYAAGVGNDARGFRFFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALP 526
I KQA++ D +G+YV +WLP+L+ +P
Sbjct: 409 IVKQAKDCDPQGDYVRHWLPELQNVP 434
>gi|427722807|ref|YP_007070084.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
gi|427354527|gb|AFY37250.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
Length = 518
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/454 (48%), Positives = 306/454 (67%), Gaps = 17/454 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+R DLR+ D++ L+ A ++P+YC D R T FGFPKTG R QFL+E +
Sbjct: 7 LLWYRRDLRLHDHKPLITALQQQAEIIPLYCFDSREFTQT-AFGFPKTGNFRGQFLLESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A+LR++L +G NLLI GKPE II L + F VY +E +EE ++E+ ++KNL Q
Sbjct: 66 ANLRRSLQQKGSNLLIYSGKPEVIISQLCRQFQIDTVYWHREVTAEETHIEKRLQKNLSQ 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+S + WGTT++ +++PF +P+V+T FRK++E + +
Sbjct: 126 QNVS------------VGTFWGTTLHEPEEMPFGIPQVPEVFTQFRKTVEKYANIVQALP 173
Query: 264 IPSSFGPPPS--VVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDL 319
P P PS + G +P ++QL L +P+ + + F GGE+AAL R+ +YFW+ +
Sbjct: 174 TPQELPPLPSELAMALGELPTLKQLGLSTPESDRRGVLAFQGGETAALERLQDYFWRGNH 233
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
LK YK+TRN +LG DYS+KFSPWLA G +S R I +V YE ERVANDSTYW++FEL+W
Sbjct: 234 LKSYKQTRNGLLGGDYSSKFSPWLALGCLSARQIAAQVSRYETERVANDSTYWLIFELLW 293
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFR+IS K+G +F G + ++ W QD++ FE WR G TG P +DANM+EL TGF
Sbjct: 294 RDYFRWISAKHGIKIFQPKGLQGVKIPWKQDREAFELWRTGQTGIPFVDANMRELLQTGF 353
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++G+DWRMGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF
Sbjct: 354 MSNRGRQNVGSFLTKNLGLDWRMGAEWFESQLIDYDVCSNWGNWNYTAGVGNDARGFRYF 413
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+IPKQA++YD +GEYV +WLP+LK++P E+ + P
Sbjct: 414 NIPKQAKDYDPQGEYVRHWLPELKSIPGEQIHQP 447
>gi|425466604|ref|ZP_18845902.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
gi|389830841|emb|CCI26891.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
Length = 485
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/453 (49%), Positives = 303/453 (66%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+EA+ +A ++P YC D R T +GFPKTG RA+FL+E
Sbjct: 3 VLIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFT-SYGFPKTGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ADLR++L + G NL+IR GKPE+IIP L + VY +E +EEL VE+ V K L
Sbjct: 62 VADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V + Q+K W T+YH DD+PF + LP+++T+FRK +E +R
Sbjct: 122 GVPV------------QIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRATY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + + G++P + L L + +G + F GGE A RV EY W D L
Sbjct: 170 PTPKKLTKLPKI-ELGNLPSLNDLGLTESILDRGGVLSFQGGEMAGKSRVKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEV+ YE+ RV NDSTYW++FEL+WR
Sbjct: 229 KTYKETRNEMLGNNYSSKFSAWLSFGCLSPRYIYEEVQKYEQTRVKNDSTYWLIFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRF+ K+GN +F+ G ++L W +D + F W +G TGYPL+DANM+EL+ TGFM
Sbjct: 289 DFFRFMCRKHGNKIFYKSGLQELYLPWLEDWERFNLWCEGKTGYPLVDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDW MGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLSKNLGIDWCMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G+Y+ +WLP+L + ++ + P
Sbjct: 409 IPKQSKDYDPKGDYLRHWLPELALIKGDKIHEP 441
>gi|443318941|ref|ZP_21048182.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
gi|442781475|gb|ELR91574.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
Length = 494
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/453 (49%), Positives = 296/453 (65%), Gaps = 15/453 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W RNDLR+ D+ L A + V+PVYC+DPR T FGFPKTGA RAQFL+E L
Sbjct: 4 LLWLRNDLRLHDHAPLQAALKTGAQVIPVYCLDPRQFGQT-DFGFPKTGAFRAQFLLEAL 62
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR++L G +L++R G PE+++P+LA+ VY +E EE VE + + L
Sbjct: 63 ADLRQSLRRLGGDLVVRQGFPEQVLPALAREVKCDRVYWHREVTPEETTVESALTRTL-- 120
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+T ++ WG T+YH DD+PF LPD++T FRK +E V
Sbjct: 121 ----------ATQGVAVQHFWGATLYHPDDLPFPLEQLPDIFTQFRKRVERDSRVSTPSP 170
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSP--KVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
P+ P P ++ GS+ ++ L L P + F GGE+A L R++ YFW D LK
Sbjct: 171 PPTQLLPLPQGLEPGSLSSLQNLGLQPPIRDDRATLVFTGGETAGLARLHHYFWAADCLK 230
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN +LG DYS+KFSPWLA G +SPRYI+ V+ YE +RV NDSTYW++FEL+WRD
Sbjct: 231 TYKETRNGLLGADYSSKFSPWLALGCLSPRYIHSAVQDYETQRVKNDSTYWLVFELLWRD 290
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRF+ +Y +S+F+ G + + W QD FE+W G TGYP +DANM+EL+ TGFMS
Sbjct: 291 YFRFVCTRYRDSVFYPSGIQGISVPWRQDWPRFEAWCQGMTGYPFVDANMRELAATGFMS 350
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ S L +++GIDWRMGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+I
Sbjct: 351 NRGRQNVASSLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRYFNI 410
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFPG 534
PKQAQ+YD +G YV +W+P L +P + + PG
Sbjct: 411 PKQAQDYDPQGRYVKHWIPALAQVPAAQVHLPG 443
>gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|376007766|ref|ZP_09784952.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|423063001|ref|ZP_17051791.1| cryptochrome DASH family [Arthrospira platensis C1]
gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|375323871|emb|CCE20705.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|406715580|gb|EKD10734.1| cryptochrome DASH family [Arthrospira platensis C1]
Length = 486
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/452 (48%), Positives = 308/452 (68%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+W+R+DLR+ D+E L A + ++P+YC DPR T FGFPK G R +FL+E +
Sbjct: 9 ILWYRHDLRLHDHEPLDLATSTQAQIIPLYCFDPRQFAKT-SFGFPKMGGFRGKFLLESV 67
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR NL G NLL+R G+PE +I L K AVY KE +EEL VER + K L
Sbjct: 68 ADLRHNLQKIGSNLLVRIGEPETVIFDLVKQLNIDAVYYHKEVTTEELAVERALEKALTP 127
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + ++K WG T+YH ++PF LP+++T+FRK +E K +
Sbjct: 128 LGV------------EVKSFWGATLYHPKELPFPIEKLPELFTNFRKQVEKKSIIYPPYT 175
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHS-PKVSKG-MRFVGGESAALGRVNEYFWKKDLLK 321
P P + + G +P + +L + P S+ + FVGGE+A L R+N+YFW++D LK
Sbjct: 176 PPKQLPTFPDI-EPGEIPTLAELGITKLPFDSRAVLDFVGGETAGLTRLNDYFWQRDCLK 234
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK+TRN MLG DYS+KFSPWLA+G +SPR+IY++V YE++RV NDSTYW++FEL+WRD
Sbjct: 235 NYKQTRNGMLGSDYSSKFSPWLANGCLSPRWIYQQVCDYEQQRVKNDSTYWLVFELLWRD 294
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI LK+G +F+ G + ++ W ++ + F+SW DG TG+PL+DANM+EL+ TGFMS
Sbjct: 295 YFRFICLKHGRKVFYKSGLQGVKIPWGENWQQFQSWCDGLTGFPLVDANMRELAATGFMS 354
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI+W+MGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+I
Sbjct: 355 NRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDGRGFRYFNI 414
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
KQ+Q+YD G+YV +WLP+L ++P + + P
Sbjct: 415 AKQSQDYDPMGDYVKHWLPELASIPHGKVHSP 446
>gi|425471952|ref|ZP_18850803.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
gi|389882102|emb|CCI37425.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
Length = 485
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/453 (49%), Positives = 303/453 (66%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+EA+ +A ++P YC D R T +GFPKTG RA+FL+E
Sbjct: 3 VLIWYRNDLRVHDHEAIHRAIQEQLEIIPFYCFDERQFGLT-SYGFPKTGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ADLR++L N G NL+IR GKPEE+IP L + VY +E +EEL VE+ V + L
Sbjct: 62 VADLRQSLENLGGNLIIRRGKPEELIPQLVQELQIAKVYYHQEVTAEELAVEKAVNQALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ Q+K W T+YH DD+PF + LP+++T+FRK +E +R
Sbjct: 122 GFPV------------QIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KG-MRFVGGESAALGRVNEYFWKKDLL 320
P P + D+G++P + L L + +G + F GGE A RV EY W D L
Sbjct: 170 PTPKKLTKLPKI-DFGNLPSLNDLGLTELILDWRGVLSFQGGEMAGKSRVKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEV+ YE+ RV NDSTYW++FEL+WR
Sbjct: 229 KTYKETRNEMLGTNYSSKFSAWLSFGCLSPRYIYEEVQKYEQTRVKNDSTYWLIFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRFI K+GN +F+ G ++L W +D + F W +G TGYPL+DANM+EL+ TGFM
Sbjct: 289 DFFRFICSKHGNKIFYKSGLQELYLPWLEDWERFNLWCEGKTGYPLVDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDW MGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLTKNLGIDWSMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G+Y+ +WLP+L + ++ + P
Sbjct: 409 IPKQSRDYDPKGDYLRHWLPELALIKGDKIHEP 441
>gi|428773120|ref|YP_007164908.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
gi|428687399|gb|AFZ47259.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
Length = 486
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/454 (48%), Positives = 307/454 (67%), Gaps = 18/454 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSS-EMVLPVYCVDPR-HSQTTYHFGFPKTGALRAQFLIE 141
++WFRNDLR+ D + + +A + + ++P YC D R ++QT+ FGFPKTG RA+ +IE
Sbjct: 5 LIWFRNDLRLHDQKCIYRAISAEPKYIIPFYCFDDRTYTQTS--FGFPKTGKYRAKLIIE 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ DL+K+L G NL+++ GK EE I + + + VY KE +EE R + K L
Sbjct: 63 SVTDLQKSLQKIGSNLVVKKGKTEEEISKIVEKYQITEVYFSKEATAEE----RAMEKKL 118
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+++ Q ++K W +T+Y DD+PF LPD++T+FRK +E K V
Sbjct: 119 TKILDKKQV--------KIKTFWQSTLYFPDDLPFSIKELPDLFTNFRKQVEKKAEVYNT 170
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHS-PKVSKG-MRFVGGESAALGRVNEYFWKKDL 319
+ PSS P P +D G +P + L L K +G + F+GGE+ A+ R+ Y W+ D
Sbjct: 171 FKTPSSLPPLPKNIDIGKIPTLSDLGLEEFTKDDRGVLTFMGGETEAIKRLQYYLWETDN 230
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
+ YK+TRN MLG DYS+KFSPWLA G +SPR IY E++ YE+ERV NDSTYW++FEL+W
Sbjct: 231 ISNYKKTRNGMLGGDYSSKFSPWLAQGCLSPRLIYTEIEKYEQERVKNDSTYWLIFELLW 290
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RD+FRF LKYGNS+FH G + ++ W ++Q LFE W G TGYPLIDANM+EL TGF
Sbjct: 291 RDFFRFTCLKYGNSVFHKSGLQNIQIPWQENQNLFELWCQGKTGYPLIDANMRELKATGF 350
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++GI+W+MGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF
Sbjct: 351 MSNRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGFRYF 410
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+IPKQ+++YD +G+Y+ +WLP++ ++ E+ + P
Sbjct: 411 NIPKQSKDYDYQGDYLRHWLPEIASIKGEKIHEP 444
>gi|425455819|ref|ZP_18835530.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
gi|389803212|emb|CCI17833.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
Length = 485
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/453 (48%), Positives = 302/453 (66%), Gaps = 16/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W+RNDLRV D+EA+ +A ++P YC D R T +GFPKTG RA+FL+E
Sbjct: 3 VLIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGLT-SYGFPKTGKFRAKFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ADLR++L + NL+IR GKPEEIIP L + VY +E +EEL VE+ V K L
Sbjct: 62 VADLRQSLESLDSNLIIRWGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALS 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+V + Q+K W T+YH DD+PF + LP+++T+FRK +E ++
Sbjct: 122 RVPV------------QIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIKATY 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P + + G++P L + + + + F GGE A R+ EY W D L
Sbjct: 170 PTPKKLTKLPKI-ELGNLPSFNDLGVTEAILDRRGFLSFQGGEMAGKSRIKEYIWDSDSL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRNEMLG +YS+KFS WL+ G +SPRYIYEEV+ YE+ RV NDSTYW++FEL+WR
Sbjct: 229 KTYKETRNEMLGTNYSSKFSAWLSCGCLSPRYIYEEVQKYEQTRVKNDSTYWLIFELLWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRFI K+GN +F+ G ++L W +D + F W +G TGYPL+DANM+EL+ TGFM
Sbjct: 289 DFFRFICSKHGNKIFYKSGLQELNLPWLEDWQRFNLWCEGKTGYPLVDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDWR+GAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+
Sbjct: 349 SNRGRQNVASFLTKNLGIDWRLGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARGFRYFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G+Y+ +WLP+L + ++ + P
Sbjct: 409 IPKQSRDYDPKGDYLRHWLPELALIKGDKIHEP 441
>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 484
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/446 (47%), Positives = 300/446 (67%), Gaps = 16/446 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++WFRNDLR+ D+ L +A S+ V+P YC DPR T FGFPKTG RAQFL+E
Sbjct: 3 VLIWFRNDLRLHDHAPLHQAVRSNADVIPCYCFDPRQFGQT-PFGFPKTGPFRAQFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ADLR++L + +L++R G PE ++P LA++ VY +E +EE+ VE +R L
Sbjct: 62 VADLRQSLRGKQSDLILRQGHPETVLPELAQALKVETVYFNREVTAEEIEVENRLRSALA 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + W +T++H + +PF LP+V+T FRK +E +
Sbjct: 122 DLGIECLR------------FWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPKAPF 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPK--VSKGMRFVGGESAALGRVNEYFWKKDLL 320
P S P + G +P +E L SP+ ++F GGE+AAL R+ +Y W++D L
Sbjct: 170 PTPQSLSTLPDIAP-GELPQLEDWGLSSPEPDARAMIQFSGGETAALARLQDYIWEQDRL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRN ML P+ STKFSPWLA G +SPRYI+++VK+YE++RV N+STYW++FEL+WR
Sbjct: 229 KRYKETRNGMLQPNDSTKFSPWLALGCVSPRYIHQQVKTYEQDRVKNNSTYWLIFELIWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
DYFRFI K+G +F + G + L W +++ FE W+ G TG+PLIDANM+EL+ TGFM
Sbjct: 289 DYFRFICAKHGKRVFRVSGLQGLALPWQDNRETFEKWQTGQTGFPLIDANMRELAATGFM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++G++W+MGAEWFE+CL+DYD CSN+GNW Y AGVGND R R+F+
Sbjct: 349 SNRGRQNVASFLTKNLGLNWQMGAEWFESCLIDYDVCSNWGNWNYAAGVGNDARGFRFFN 408
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALP 526
I KQA++YD +G+YV +WLP+LK +P
Sbjct: 409 IVKQAKDYDPQGDYVRHWLPELKDVP 434
>gi|409991103|ref|ZP_11274395.1| DASH family cryptochrome [Arthrospira platensis str. Paraca]
gi|291567701|dbj|BAI89973.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
gi|409938041|gb|EKN79413.1| DASH family cryptochrome [Arthrospira platensis str. Paraca]
Length = 490
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/452 (47%), Positives = 304/452 (67%), Gaps = 16/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+W+RNDLR+ D+E L A + ++P+YC DPR T FGFPKTG R +FL+E +
Sbjct: 9 ILWYRNDLRLHDHEPLDLATSTQGQIIPLYCFDPRQFAKT-SFGFPKTGGFRGKFLLESV 67
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR N G NLL+R G+PE +I L K AVY KE +EEL VE + K L
Sbjct: 68 ADLRHNFQKIGSNLLVRIGEPERVIFDLVKQLNIDAVYYHKEVTAEELAVETALEKALTP 127
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + ++K WG T+YHL ++PF LP+++T+FRK +E K +
Sbjct: 128 LGV------------EVKSFWGATLYHLKELPFPIEKLPELFTNFRKQVEQKSVIYPPYT 175
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLLK 321
P+ P + + G +P + +L + + + F GGE+A L R+N+YFW++D LK
Sbjct: 176 PPNQLPQFPDI-EPGEIPTLTELGITPAPFDERSVLDFAGGETAGLSRLNDYFWRRDCLK 234
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK+TRN MLG DYS+KFSPWLA+G +SPR+IY++V+ Y+ +RV NDSTYW++FEL+WRD
Sbjct: 235 NYKQTRNGMLGSDYSSKFSPWLANGCLSPRWIYQQVQDYQHQRVKNDSTYWLVFELLWRD 294
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI LK+G +F+ G + ++ W ++ + ++ W G TG+PL+DANM+EL+ TGFMS
Sbjct: 295 YFRFICLKHGPKVFYKSGLQGVKIPWGENWEQWQIWCQGLTGFPLVDANMRELAATGFMS 354
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GI+W+MGAEWFE+ L+DYD CSN+GNW Y AGVGND R RYF+I
Sbjct: 355 NRGRQNVASFLTKNLGINWQMGAEWFESVLIDYDVCSNWGNWNYTAGVGNDGRGFRYFNI 414
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
KQ+Q+YD G+YV +WLP+L ++P R + P
Sbjct: 415 AKQSQDYDPMGDYVKHWLPELASIPDGRVHSP 446
>gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex]
Length = 520
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/459 (47%), Positives = 299/459 (65%), Gaps = 19/459 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
VAI FRNDLR DNE + A S++ VLP+YC DPRH + T+H+ FPKTG R QFL+E
Sbjct: 11 VAICLFRNDLRYHDNEVIALAHKSADFVLPLYCFDPRHFEGTHHYKFPKTGIFRTQFLLE 70
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAV--YAQKETCSEELNVERLVRK 199
+ D R+ L+ RG NL+I H KPEE + + KS V Q E EE +VE+ ++K
Sbjct: 71 SVEDFRQTLVKRGSNLMIVHSKPEEALLKIFKSLTGLKVTLILQTEVTKEETDVEKRLQK 130
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
Q++ S + WG+T+YH D+PF + +PD YT FRK +E K +R
Sbjct: 131 ICQEIKASYIN------------CWGSTLYHKGDLPFQINHVPDSYTGFRKDVEEKLRIR 178
Query: 260 GCIRIPSSFGPPPSV---VDWGSVPLIEQLELHSP--KVSKGMRFVGGESAALGRVNEYF 314
I +P P P+ + WG++P IE L P S F GGE+AAL R+ Y
Sbjct: 179 PEISMPDKMKPVPTFAHEIPWGNLPTIEALNSTKPIPNSSSAFPFNGGETAALLRLKSYL 238
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
W + + YKETRN ++G DYSTKFS WL+ G +SPR I+ E++ YE +R N STYWV
Sbjct: 239 WDTNAVAQYKETRNGLIGSDYSTKFSSWLSHGCLSPRRIHWELEKYELQRTKNQSTYWVR 298
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
FEL+WRDYF+F+S+KYG+ +F+ G + +W +D +LF++W+ G TG P +DANM+EL
Sbjct: 299 FELLWRDYFKFVSMKYGDRIFYPNGMKGRRQQWKKDMELFKAWQMGKTGVPFVDANMREL 358
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
TG+MSNRGRQ SFLV+D+ +DWR+GAEWFE+ LLD+D CSNYGNW Y AG+GNDPR
Sbjct: 359 LATGWMSNRGRQNVASFLVKDLLLDWRLGAEWFESLLLDHDVCSNYGNWNYVAGIGNDPR 418
Query: 495 EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
E+R F++ KQ+ +YD EG Y+ W+P+L+ +P + + P
Sbjct: 419 ENRKFNMIKQSMDYDLEGNYIRMWVPELREIPGSKIHSP 457
>gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 488
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/454 (50%), Positives = 302/454 (66%), Gaps = 16/454 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
++WFR DLR+LD++ L +A ++P+YC+DPRH T FGFPKTG RAQFL+E
Sbjct: 2 AVLLWFRTDLRLLDHQPLTRACQQGSFLIPLYCLDPRHFGRT-AFGFPKTGPFRAQFLLE 60
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LADLR+ L RG +L+IR G+PE++IP+LA+ +G AVYA +E +EE V R +++ L
Sbjct: 61 SLADLRQQLRARGSDLVIRQGQPEQVIPALAREWGVKAVYAHEEVGTEEEAVARALQQAL 120
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
Q + + L L WG T+YH D+PF + LP+V+T FR+ +EAK +R
Sbjct: 121 QPLGIP------------LHLEWGHTLYHPADLPFALADLPEVFTRFRQQVEAKAAIRAP 168
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV--GGESAALGRVNEYFWKKDL 319
+ IPS PP + L E L L P RFV GG +AA R+ Y W D
Sbjct: 169 LPIPSLPPLPPGLDPGPLPTLAE-LGLSLPPPDPRARFVYAGGSTAAQARLQTYIWDLDR 227
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L+VYKETRN ML P+ S++ S WLA G +SPR +Y EVK YE ERV N+STYW++FEL+W
Sbjct: 228 LRVYKETRNGMLDPNDSSRLSAWLALGCLSPRTVYAEVKRYEEERVRNESTYWLVFELLW 287
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFRFI K+G LF G + + W QD F++W G TGYPL+DANM+EL+ TGF
Sbjct: 288 RDYFRFILAKHGAKLFCPAGIQGIPIPWQQDGDRFQAWCRGETGYPLVDANMRELAATGF 347
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++GIDWR+GAEWFE+ L+DYD SNYGNW Y AGVGND R RYF
Sbjct: 348 MSNRGRQNVASFLTKNLGIDWRLGAEWFESLLIDYDVASNYGNWNYTAGVGNDARGFRYF 407
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+++YD +G Y+ +WLP+L +P ++ + P
Sbjct: 408 HIPKQSRDYDPQGHYLRHWLPELAGIPGDKIHEP 441
>gi|449492091|ref|XP_004176864.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Taeniopygia
guttata]
Length = 488
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/449 (48%), Positives = 294/449 (65%), Gaps = 16/449 (3%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G AI R DLR DN+ L A +++ V+P+YC DPRH T+ + PKTG R +FL+
Sbjct: 6 GTAICLLRCDLRAHDNQVLHWAQHNADFVIPLYCFDPRHYLGTHCYRLPKTGPHRLRFLL 65
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA-HAVYAQKETCSEELNVERLVRK 199
E + DLR+ L +G L++R GKPE+++ L G+ AV +E EEL+VE K
Sbjct: 66 ESVKDLRETLKKKGSTLVVRKGKPEDVVCDLITQLGSVTAVVFHEEATQEELDVE----K 121
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTV 258
L QV + +++ WG+T+YH DD+PF LPDVYTHF K +E+ V
Sbjct: 122 GLCQVC--------RQHGVKIQTFWGSTLYHRDDLPFRPIDRLPDVYTHFEKGLESGAKV 173
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF--VGGESAALGRVNEYFWK 316
R +R+ P ++ GS+P +E P F GGE+ AL R+ YFW
Sbjct: 174 RPTLRMADQLKPLAPGLEEGSIPTMEDFGQKDPVDDPRTAFPCSGGETQALMRLQYYFWD 233
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
+L+ YKETRN ++G DYSTKF+PWLA G ISPRYIYE+++ YERER AN+STYWVLFE
Sbjct: 234 TNLVASYKETRNGLVGMDYSTKFAPWLALGCISPRYIYEQIQKYERERTANESTYWVLFE 293
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L+WRDYFRF++LKYG +F L G + + W +D +LF W++G TG P +DANM+ELS
Sbjct: 294 LLWRDYFRFVALKYGRRIFSLRGLQSKDIPWKKDLQLFSCWQEGKTGVPFVDANMRELSA 353
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TGFMSNRGRQ SFL +D+G+DWRMGAEWFE L+DYD CSNYGNW Y AG+GNDPR++
Sbjct: 354 TGFMSNRGRQNVASFLTKDLGLDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPRDN 413
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R F++ KQ +YD G+YV W+P+L+ +
Sbjct: 414 RKFNMIKQGLDYDGNGDYVRLWVPELQGI 442
>gi|410027954|ref|ZP_11277790.1| DASH family cryptochrome [Marinilabilia sp. AK2]
Length = 474
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/446 (49%), Positives = 299/446 (67%), Gaps = 15/446 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV D+ L A + +E V+PVYC DPR+ + G KTG RA+FLIE
Sbjct: 5 VVVWFRNDLRVHDHAPLFYAAEKAEEVIPVYCFDPRNFKKV-SLGIDKTGNHRAKFLIEA 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ +LR NL + G +L+I GKPEE++ SLAK A A++ +E EE VE + +N
Sbjct: 64 VDNLRSNLQSLGGDLVIIQGKPEEVLVSLAKKHDAEAIFFSEEVTDEEKEVELQLEQN-- 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + K+T + W +++YH+ D+PF + P+V+T FRK E V+G +
Sbjct: 122 ----AWKHGIKTTAY------WQSSLYHIQDLPFPVNQTPEVFTQFRKECEKFAKVQGTL 171
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
+P P + + G +P + L P +S + F GGE+ + R+ YFW++DLL
Sbjct: 172 PLPKKINFPKNSFNLGDLPRLSTFGLKEPDLSSRAVLVFKGGETEGIRRLQTYFWEQDLL 231
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRN +LG DYS+KFS W++ G +SPRYIYEEVK YE+ER N STYW++FEL+WR
Sbjct: 232 KEYKETRNGLLGADYSSKFSAWISLGCLSPRYIYEEVKRYEKERKKNQSTYWLIFELIWR 291
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
DYFRFI K+GN +F LGG + KWS+++ F W G TG P IDANM+EL+ TGFM
Sbjct: 292 DYFRFICKKHGNKVFQLGGIKNNVDKWSRNENHFWKWALGQTGIPFIDANMRELNETGFM 351
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFLV D+GIDWR GA +FE+ L+DYD CSN+GNW Y AGVGNDPRE+RYF+
Sbjct: 352 SNRGRQNVASFLVNDLGIDWRWGAMYFESQLVDYDVCSNWGNWMYVAGVGNDPRENRYFN 411
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALP 526
I +QAQNYDR+G+++ +W+P+L +P
Sbjct: 412 IMRQAQNYDRKGDFIRHWIPELADIP 437
>gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421]
gi|81834455|sp|Q7NMD1.1|CRYD_GLOVI RecName: Full=Cryptochrome DASH
gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421]
Length = 500
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/454 (49%), Positives = 300/454 (66%), Gaps = 16/454 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+VW+RNDLRV D+E L A + V+ +YC DPR FGF KTG RA+FL+E
Sbjct: 5 TVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKA-PFGFEKTGPFRARFLLE 63
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ADLR++L G +LL+R G PEE+IP+L AV+ E SEEL VER ++ L
Sbjct: 64 SVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQAAL 123
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + +S WGTT+ H DD+PF ++P+++T FRK +E +
Sbjct: 124 APLNVPVRS------------FWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAI-NP 170
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDL 319
+ PP VD G +P + L L SP + ++F GGE++ L R+ EYFW+K L
Sbjct: 171 PLPAPAKLPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFWQKSL 230
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
LK YK+TRN MLG DYS+KFS WLA G +S RYI+E+V++YE +R+ NDSTYW++FEL+W
Sbjct: 231 LKSYKQTRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRIKNDSTYWLIFELLW 290
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFRFI+ K+G+ LF+ G R L+ W +D + FE WR G TG+PL+DANM+EL+ TGF
Sbjct: 291 RDYFRFIAAKHGDRLFYTAGLRGLDIPWKEDWERFELWRTGQTGFPLVDANMRELAATGF 350
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++GI W MGAEWFE+ L+DYD SN+GNW Y AGVGND R R+F
Sbjct: 351 MSNRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARGFRFF 410
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+I KQA++YD +G YV +WLP+L LP R + P
Sbjct: 411 NILKQARDYDPDGAYVKHWLPELAGLPPARVHEP 444
>gi|167521638|ref|XP_001745157.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776115|gb|EDQ89735.1| predicted protein [Monosiga brevicollis MX1]
Length = 525
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 297/463 (64%), Gaps = 27/463 (5%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSE-MVLPVYCVDPR-HSQTTYHFG-----FPKTGALR 135
+VWFRNDLRV DNE LL+A +S V+PVYC D R +S H FPK G R
Sbjct: 10 VVVWFRNDLRVHDNEVLLQAAKASHNHVVPVYCFDIRQYSLVITHRSRRCGQFPKCGRPR 69
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER 195
A+FLIE + DLR L G L++R G PEE + +A GA V+A +E CSEE+ E
Sbjct: 70 ARFLIESVDDLRTRLQELGSGLVVRTGLPEEEVARVAAQVGATQVFAHQEVCSEEVAAEH 129
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLIWG-TTMYHLDDIPFDH--SSLPDVYTHFRKSI 252
+++ L+ L L WG T+ HLDD+ F LP V+T FRK +
Sbjct: 130 RLKRQLEV---------------PLSLHWGAVTLCHLDDLDFGPRCKHLPSVFTQFRKRV 174
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQL--ELHSPKVSKGMRFVGGESAALGRV 310
EA VR + P+ P PS ++ GS+P +E L H P + F GGE+AA R+
Sbjct: 175 EADMHVRPVVAAPARLAPLPSDLELGSIPTVEDLCPGQHEPDERAVLPFKGGETAARARL 234
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
Y W+ +LL YK+TRN ++G DYS+KFSPWLA G+++ R+IY EVK YE+ER N ST
Sbjct: 235 QYYLWESNLLASYKDTRNGLVGGDYSSKFSPWLAHGNLTARWIYHEVKRYEQERTENTST 294
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW++FEL+WRDYFRF++L++G ++F GG + + W FE+W++G TG+P IDAN
Sbjct: 295 YWLIFELLWRDYFRFVALQHGTAIFKPGGVQHKDVPWRHSPADFEAWQNGQTGFPFIDAN 354
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M+EL+ TGFMSNRGRQ SFL +D+ IDWR+GAEWFET LLD+DPCSNYGNW Y AGVG
Sbjct: 355 MRELAKTGFMSNRGRQNVASFLTKDLQIDWRLGAEWFETLLLDHDPCSNYGNWNYAAGVG 414
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
NDPR+ R+F++ KQA+ YD EYV W+P+L+ L + + P
Sbjct: 415 NDPRQGRHFNVIKQAKTYDPTAEYVHLWVPELRGLDAPQAHVP 457
>gi|338210188|ref|YP_004654235.1| DASH family cryptochrome [Runella slithyformis DSM 19594]
gi|336304001|gb|AEI47103.1| cryptochrome, DASH family [Runella slithyformis DSM 19594]
Length = 479
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/440 (50%), Positives = 290/440 (65%), Gaps = 18/440 (4%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I WFRNDLR+ DNE LKA ++ V+P+Y D R + G PKTG RA+FL+E +
Sbjct: 6 IYWFRNDLRLHDNEGFLKAIQDADEVIPIYVFDTRQFEEIGSLGIPKTGTFRAKFLLESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+LR NL +G NL+I+ GKPE +I LA+ + A+Y KE EE +VE + K L+
Sbjct: 66 QNLRDNLRKKGANLVIKLGKPEIVISELAREWDVTAIYTAKEATQEETDVETSLSKKLK- 124
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++ WG T+YH D+PF S LPDV+T FRK +E K +R +
Sbjct: 125 -----------VYNIDFEVFWGATLYHPRDLPFWVSRLPDVFTDFRKVVEGKSVIRPAFQ 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHS--PKVSKGMRFV--GGESAALGRVNEYFWKKDL 319
P + P + ++G +P I +L L S P+V + FV GGE+ AL R+N Y W+ D
Sbjct: 174 EPIALRLPEGL-EFGKMPEIYELILFSQLPEVDRRAAFVFKGGETEALQRLNAYLWETDH 232
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
+K YKETRN +LG +YS+KFSPWLA G +SPR IYEEVK YE + ANDSTYW++FEL+W
Sbjct: 233 IKFYKETRNGLLGANYSSKFSPWLAYGCVSPRQIYEEVKKYEAQHGANDSTYWLIFELVW 292
Query: 380 RDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
RDYFRF++LKYG LF G + LE +W+ ++ LF+ W +G TG P IDANM+EL +TG
Sbjct: 293 RDYFRFLALKYGTRLFKTTGIKYNLELRWNHNRDLFDQWVNGKTGIPFIDANMQELKLTG 352
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
FMSNRGRQ SFL +D+ +DW GA +FE+ L+DYD CSN+GNW Y AGVGNDPRE+RY
Sbjct: 353 FMSNRGRQNVASFLAKDLKVDWTWGAAYFESQLIDYDVCSNWGNWNYIAGVGNDPRENRY 412
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F+I QA YD +GEYV W
Sbjct: 413 FNIFTQANKYDAKGEYVKTW 432
>gi|392963931|ref|ZP_10329352.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
gi|387846826|emb|CCH51396.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
Length = 482
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/455 (47%), Positives = 293/455 (64%), Gaps = 27/455 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ WFRNDLR+ DNE +A ++ VLPV+ +PR ++ GF KTG RA FL+E +
Sbjct: 6 LYWFRNDLRLHDNEGFARAVADADEVLPVFVFNPRLFAEVHNLGFKKTGIYRASFLLESV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR+++ +G L+IR G+P I+ LA+S AVYA KE EE + E + K L+
Sbjct: 66 ADLRQSIRAKGGELIIRIGEPANILAELAESADVAAVYASKEVTQEETDAESNLSKRLKP 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + L L W T+YH+ D+PF+ S LPD++T FR IE VR I
Sbjct: 126 LNI------------DLDLFWVATLYHVRDLPFEISKLPDIFTQFRTRIEKYGKVRPTIP 173
Query: 264 IPSSF--------GPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
P G P++ +G P + +P + + F GGE+ AL R+N Y W
Sbjct: 174 APEQIRIMSEVEAGDIPTLATFGFAPDV------APDIRAAVPFKGGETVALERLNRYVW 227
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+++L++ YKETRN MLG DYS+KFS WLA G +SPR IYEEVK YE ERV N+STYW++F
Sbjct: 228 ERELIRTYKETRNGMLGEDYSSKFSAWLALGCLSPRLIYEEVKRYEDERVKNESTYWLIF 287
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WRD+FRF++L+YG LF G R KW +D +F W +G TG P +DANM+E+
Sbjct: 288 ELLWRDFFRFVALRYGTRLFKPSGIRHDFNRKWRRDTDVFIRWAEGETGIPFVDANMREM 347
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TGFMSNRGRQ SFLV+D+GIDW GA +FE+ L+DYD CSN+GNW Y AGVGNDPR
Sbjct: 348 NATGFMSNRGRQNVGSFLVKDLGIDWTWGAAYFESLLVDYDVCSNWGNWNYVAGVGNDPR 407
Query: 495 EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKER 529
EDRYF+I QA YD +G+YV +WLP++ +P ++
Sbjct: 408 EDRYFNIYSQATRYDEQGDYVKHWLPEIAGVPADK 442
>gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 486
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/454 (48%), Positives = 300/454 (66%), Gaps = 15/454 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
++WFR DLR+LD++ L +A ++P+YC+DPR T P+T R QFL+E
Sbjct: 2 TVLLWFRTDLRLLDHQPLTRACQQGSPLIPLYCLDPRQFGETSLGLRPRTSPFRGQFLLE 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LADLR+ L +RG +L+IR G+PE++IP+LA+ +G AVYA +E +EE V V + L
Sbjct: 62 SLADLRQQLRSRGSDLVIRQGQPEQVIPTLAQEWGVEAVYAHEEVGTEEKEVAAAVERAL 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + + +L++ WG T+YH +D+PF S LP+++T FRK +E +R
Sbjct: 122 RSLGI------------RLQVDWGHTLYHPEDLPFCLSQLPELFTRFRKQVEGSTPIRDP 169
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV--GGESAALGRVNEYFWKKDL 319
+ IPS P + D G +P + L L SP RF GG +AA R+ YFW D
Sbjct: 170 LPIPSIPPLPSGL-DPGPLPTLASLGLSSPARDPRARFTYTGGSTAAHARLQTYFWDLDR 228
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L++YKETRN ML PD S++ S WLA G ISPR +Y EVK YE+ERV N+STYW++FEL+W
Sbjct: 229 LRIYKETRNGMLDPDDSSRLSAWLALGCISPRTVYAEVKRYEQERVRNESTYWLVFELLW 288
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFRFI K+G LF G + + W QD F++W G TGYPL+DANM+EL+ TGF
Sbjct: 289 RDYFRFILAKHGAKLFRPSGIQGIPIPWQQDWPRFQAWCRGETGYPLVDANMRELAATGF 348
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++GIDWRMGAEWFE+ L+DYD SNYGNW Y AGVGND R RYF
Sbjct: 349 MSNRGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVASNYGNWNYTAGVGNDARGFRYF 408
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ++ YD +G+Y+ +WLP+L +P ++ + P
Sbjct: 409 HIPKQSREYDPKGDYLRHWLPELAGIPGDKIHEP 442
>gi|156354106|ref|XP_001623243.1| predicted protein [Nematostella vectensis]
gi|156209922|gb|EDO31143.1| predicted protein [Nematostella vectensis]
Length = 524
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/461 (47%), Positives = 292/461 (63%), Gaps = 21/461 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
I RNDLR DNEALL A +++ VLP+YC DP H +TT+ F PKT RA+FL+E
Sbjct: 9 TVICLLRNDLRYHDNEALLWAHKNADFVLPLYCFDPDHYKTTWRFSLPKTAQYRAKFLLE 68
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA----VYAQKETCSEELNVERLV 197
+ DLR L G NL+IR +P E + L + A + Q+E EELNVE+ +
Sbjct: 69 SVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTYEELNVEKAL 128
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ + KS H + IWG+T++H DDIP+ ++PD YT FRK +E + T
Sbjct: 129 VEFCK----------KSGIH--MHTIWGSTLFHKDDIPYKAKTVPDTYTQFRKGVENQST 176
Query: 258 VRGCIRIPSSFGP-PPSVVDWGSVPLIEQL----ELHSPKVSKGMRFVGGESAALGRVNE 312
VR I +P + P PP + G++P ++ L E+ F+GGE AL R+
Sbjct: 177 VRNLIDMPKNLKPLPPVKGELGTIPDLKSLLNDSEIKEVDQRSAFPFMGGEQEALSRLGS 236
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
Y W D + YKETRN +LG +YSTK SPWLA+GS+SPR +Y +K YE ERVAN STYW
Sbjct: 237 YLWGTDSVAKYKETRNGLLGENYSTKLSPWLANGSLSPRMVYHRIKQYEEERVANHSTYW 296
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
VLFEL+WRDYF+F+ LKYG+ +F+ G W D+ F+ W +G TG P +DANM+
Sbjct: 297 VLFELIWRDYFKFVCLKYGDRVFYRSGIMGKSLPWKHDKMTFKLWCEGKTGVPFVDANMR 356
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TG+MSNRGRQ SFL++D+G+DWR GAEWFE+ LLD+D CSNYGNW Y AG+GND
Sbjct: 357 ELKETGWMSNRGRQNVASFLIKDLGLDWRYGAEWFESLLLDHDVCSNYGNWNYAAGIGND 416
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
PRE R F++ KQ +YD +G+Y+ W+P+L +P + + P
Sbjct: 417 PREGRKFNMVKQGLDYDPDGDYIKTWVPELAKIPGAKVHVP 457
>gi|440749032|ref|ZP_20928282.1| Cryptochrome [Mariniradius saccharolyticus AK6]
gi|436482734|gb|ELP38832.1| Cryptochrome [Mariniradius saccharolyticus AK6]
Length = 475
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/479 (46%), Positives = 300/479 (62%), Gaps = 30/479 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFRNDLR+ DN L A + +E V+PVYC DPRH G K G LRA+FL E +
Sbjct: 7 IVWFRNDLRIHDNVTLSMACEKAEEVIPVYCFDPRHFGEI-DLGMEKMGNLRAKFLKETV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
++LR+NL G +L++ G PE+ IP+LA S A A++ +E EE V+ + +
Sbjct: 66 SELRQNLQKLGADLVVLQGFPEKEIPNLAVSLQAEAIFFSEEVTDEEKQVDDALESTAWK 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++S W T++H+DD+PF P+V+T FRK E C VR
Sbjct: 126 KGIKTRS------------FWQHTLFHIDDLPFPIGQTPEVFTQFRKECEKFCKVRLHAS 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPK-VSKG-MRFVGGESAALGRVNEYFWKKDLLK 321
P++ P ++ G +P + + L P+ +G + F GGE L R+ YFW D LK
Sbjct: 174 TPNAINFPKIEIEKGQIPALSEFGLEEPEDTGRGVLMFKGGEQEGLRRLQTYFWNLDCLK 233
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK TRN +LG +YS+KFSPWLA G +SPR IY EVK YE+ERV NDSTYW++FEL+WRD
Sbjct: 234 DYKNTRNGLLGANYSSKFSPWLALGCLSPRQIYWEVKRYEKERVKNDSTYWLVFELIWRD 293
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI+ K+GN +F L G + +W +D+ LF W +G TG P +DANM+EL+ TGFMS
Sbjct: 294 YFRFIAKKHGNKIFQLKGIKPFADRWRRDESLFWKWANGHTGIPFVDANMRELNGTGFMS 353
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFLV D+GIDWR GA +FE+ L+DYD CSN+ NW Y AGVGNDPRE+RYF+I
Sbjct: 354 NRGRQNVASFLVNDLGIDWRWGAAYFESKLIDYDVCSNWCNWMYVAGVGNDPRENRYFNI 413
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------------GGSYIEQIVSLK 545
KQ NYD++G+YV +W+P+L +P + P GG+Y IVS+K
Sbjct: 414 LKQGSNYDKKGDYVRHWIPELGKVPGFDIHRPFELNASELKRYGVSLGGNYPHPIVSMK 472
>gi|421610747|ref|ZP_16051913.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
gi|408498531|gb|EKK03024.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
Length = 488
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/446 (47%), Positives = 293/446 (65%), Gaps = 17/446 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFRNDLR +D+E L+A +++ V+C+DPR +TT GF +TG RA+FLIE
Sbjct: 4 ALVWFRNDLRTIDHEPFLRA-STADRCFAVHCIDPRQFETT-ELGFQRTGPFRARFLIES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DLR L + G L++R G+PE ++ L S AV+ E +EE + V++
Sbjct: 62 LTDLRSRLRSLGGELIVRAGRPETVLQHLLPSLAVDAVHFHHEPGTEEADTAESVQQLCD 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q +++ + +G T+ H D++PF+ S P+++T FRK IE +C R +
Sbjct: 122 QQGIATH------------VAYGDTLIHPDELPFEISDTPELFTDFRKEIEKQCEARSPL 169
Query: 263 RIPSSF-GPPPSVVDWGSVPLIEQLELHSPKVSKGM--RFVGGESAALGRVNEYFWKKDL 319
P G P V+ G +P +E L L +P + RF GG++AA R+ EY W +D
Sbjct: 170 EEPIRIQGALPEEVNAGDIPTLESLGLSTPPLDDRCLNRFTGGQNAAQQRMEEYIWNEDR 229
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L+VYKETRN ML P+ S+KFSPWLA G +SPR I + V+ YE+ERV N STYW++FEL+W
Sbjct: 230 LRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEKERVENKSTYWMIFELLW 289
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFR+IS K+G +LF GG R + W D++LF W+DG TGYPL+DANM+EL TG+
Sbjct: 290 RDYFRWISRKHGATLFRAGGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGY 349
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++GIDWR GA WFE+ L+DYD SNYGNW Y AGVGND R R+F
Sbjct: 350 MSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARGFRFF 409
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+I KQ+++YD +GEY +WLP+L+ L
Sbjct: 410 NITKQSRDYDSQGEYAKHWLPELRDL 435
>gi|284041014|ref|YP_003390944.1| DASH family cryptochrome [Spirosoma linguale DSM 74]
gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
Length = 487
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/460 (45%), Positives = 297/460 (64%), Gaps = 27/460 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ WFRNDLR+ DNE ++A ++++ VLPV+ DPR F + A RA FL+E +
Sbjct: 5 LYWFRNDLRLHDNEGFVRALENADQVLPVFVFDPRWFARHSQLEFRRMSAFRANFLLESV 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR++L +RG +L++R GKP +++ LA GA AVYA KE EE E + L+
Sbjct: 65 ADLRQSLRSRGADLIVRVGKPADVLAELAGEIGATAVYASKEVTHEETTQETKLSTKLKP 124
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + ++L W +T+YH+ D+PF S LPDV++ FR+ +E K +R
Sbjct: 125 LNID------------IELFWMSTLYHVRDLPFTISQLPDVFSKFRQQLEKKAIIRPAFT 172
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHS--------PKVSKGMRFVGGESAALGRVNEYFW 315
+P+ P++ D G++P + L + P + F GGE+ AL R++ Y W
Sbjct: 173 LPTRIELVPNI-DPGAIPTLSTLGFNDTDIRLILQPDARGAVPFSGGETVALARLDRYLW 231
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ DL+ YKETRN +LG DYS+KFS WLA+G +SPR IYEEV YE ERV N+STYW++F
Sbjct: 232 QTDLIATYKETRNGLLGEDYSSKFSAWLATGCLSPRKIYEEVTRYETERVRNESTYWLIF 291
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WRD+FRF++LK+G +F G + L + +D+ LF+ W +G TG P IDANM+E+
Sbjct: 292 ELLWRDFFRFVALKFGTRIFKRSGIKHDLHKTYGRDEDLFQKWAEGHTGIPFIDANMREM 351
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TGFMSNRGRQ SFLV D+G+DW GA +FE+ L+DYDPCSN+GNW Y AGVGNDPR
Sbjct: 352 NATGFMSNRGRQNVASFLVSDLGLDWTWGAAYFESKLIDYDPCSNWGNWNYVAGVGNDPR 411
Query: 495 -----EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKER 529
+ RYF+I QA YD +G+YV +WLP+L +P E+
Sbjct: 412 QFSNGQPRYFNILSQALRYDEQGDYVKHWLPELAKVPNEQ 451
>gi|404450368|ref|ZP_11015352.1| DASH family cryptochrome [Indibacter alkaliphilus LW1]
gi|403764104|gb|EJZ25020.1| DASH family cryptochrome [Indibacter alkaliphilus LW1]
Length = 473
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/444 (48%), Positives = 286/444 (64%), Gaps = 15/444 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLRV D+ L A + V+PVYC DPR T GF KTG+ RA FL+ +
Sbjct: 5 LVWFRNDLRVHDHAPLFAASQKAVEVIPVYCFDPRQFDTI-ELGFAKTGSFRADFLLSAV 63
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+LRK L G +L I GKPEE + LA AV+ +E SEE VE + K L +
Sbjct: 64 DNLRKRLNEIGSDLFILQGKPEEEVSRLALELNVDAVFFSEEVTSEEKYVEEALEKKLWK 123
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++S W +T++HL+D+PF + +P+V+T FRK E ++
Sbjct: 124 EGIKTES------------FWQSTLFHLEDLPFPINQVPEVFTQFRKECEKYAHIKKTFP 171
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVS--KGMRFVGGESAALGRVNEYFWKKDLLK 321
IP + P V G +P ++ L P + F GGE L R+ YFWK D LK
Sbjct: 172 IPINLKLPELDVLRGEIPSLKSFGLEKPDADPRSVLVFEGGEEEGLRRLQTYFWKNDCLK 231
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK+TRN +LG DYS+KFSPWLA G +SPRYIYEE++ YE+ N STYW++FEL+WRD
Sbjct: 232 DYKQTRNGLLGADYSSKFSPWLALGCLSPRYIYEEIQKYEKAVKKNQSTYWLIFELIWRD 291
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFRFI+ K+GN +F LGG + KW +++ LF W +G TG P +DANM+EL+ TGFMS
Sbjct: 292 YFRFIAKKHGNRIFQLGGIKSNVDKWLRNEDLFWIWANGKTGIPFVDANMRELNTTGFMS 351
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFLV D+GIDWR GA +FE+ L+DYD CSN+GNW Y AGVGNDPRE+RYF+I
Sbjct: 352 NRGRQNVASFLVNDLGIDWRWGAAYFESQLIDYDVCSNWGNWMYVAGVGNDPRENRYFNI 411
Query: 502 PKQAQNYDREGEYVAYWLPQLKAL 525
+QAQNYD++G+YV W+P+L+ L
Sbjct: 412 LRQAQNYDKKGDYVRTWIPELQGL 435
>gi|16330358|ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451814516|ref|YP_007450968.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780485|gb|AGF51454.1| DNA photolyase [Synechocystis sp. PCC 6803]
Length = 453
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/423 (50%), Positives = 284/423 (67%), Gaps = 14/423 (3%)
Query: 112 VYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSL 171
+YC DPR T H GF KTG R+ FL + + +L ++L G LL+ G PE++IP +
Sbjct: 1 MYCYDPRQFAQT-HQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQI 59
Query: 172 AKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHL 231
AK A +Y +E EEL+VER + K L + + + K WG+T+ H
Sbjct: 60 AKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEA------------KGYWGSTLCHP 107
Query: 232 DDIPFDHSSLPDVYTHFRKSIEAK-CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHS 290
+D+PF LPD++T FRK IE K ++R C PS P P++ + P E +
Sbjct: 108 EDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQIN 167
Query: 291 PKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISP 350
+ F GGE+A L R+ +YFW D LK YKETRN M+G DYS+KFSPWLA G +SP
Sbjct: 168 FDHRSVLAFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSP 227
Query: 351 RYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQD 410
R+IY+EVK YE+ERV+NDST+W++FEL+WRD+FRF++ KYGN LF+ GG + W +D
Sbjct: 228 RFIYQEVKRYEQERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQED 287
Query: 411 QKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETC 470
Q FE WR G TGYPL+DANM+EL++TGFMSNRGRQ SFL +++GIDWR GAEWFE+C
Sbjct: 288 QVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESC 347
Query: 471 LLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERR 530
L+DYD CSN+GNW Y AG+GND R+ RYF+IPKQ+Q YD +G Y+ +WLP+LK LP ++
Sbjct: 348 LIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKI 407
Query: 531 NFP 533
+ P
Sbjct: 408 HQP 410
>gi|436838433|ref|YP_007323649.1| cryptochrome, DASH family [Fibrella aestuarina BUZ 2]
gi|384069846|emb|CCH03056.1| cryptochrome, DASH family [Fibrella aestuarina BUZ 2]
Length = 501
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/460 (46%), Positives = 285/460 (61%), Gaps = 27/460 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ WFRNDLR+ DNE A + VLPVY DP + KTG LR FL+E +
Sbjct: 17 LYWFRNDLRLHDNEGFAAACMQARQVLPVYVFDPAAFRLLPTLNLKKTGLLRTNFLLEAV 76
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR +L RG +L++R G P ++ LA+ A A+YA KE SEE +VE + K L+
Sbjct: 77 ADLRSSLRARGGDLIVRVGDPARVLADLAEEIEADAIYASKEVTSEETDVESALSKRLKP 136
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + ++ W +T+YH+ D+PF+ LPDV+T FR+ +E VR +
Sbjct: 137 LNID------------IEFFWTSTLYHVRDLPFNVVKLPDVFTAFRQQVEKHVQVRSLVA 184
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHS--------PKVSKGMRFVGGESAALGRVNEYFW 315
P + + GS+P + + P + F GGES AL R+N Y W
Sbjct: 185 TPDRINLAGHI-EAGSLPTPDTFGFDAETQAVAARPDNRAAVPFKGGESVALARLNAYIW 243
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++LLK YKETRN +LG DYS+KFS WLA G +SPR +Y E+K YE+ERVAN+STYW++F
Sbjct: 244 GRELLKTYKETRNGLLGEDYSSKFSAWLAHGCLSPRQLYHEIKRYEQERVANESTYWLIF 303
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WRD+FRF++LK+G +F G R + KW D LF W +G TG P IDANM+EL
Sbjct: 304 ELIWRDFFRFVALKFGTRIFKPSGIRYDITKKWDHDLALFHQWTEGQTGIPFIDANMREL 363
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
TGFMSNRGRQ SFLV+D+GIDW GA WFE+ L+DYDPCSN+GNW Y AGVGNDPR
Sbjct: 364 RRTGFMSNRGRQNVASFLVKDLGIDWTWGAMWFESQLVDYDPCSNWGNWNYQAGVGNDPR 423
Query: 495 -----EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKER 529
+ RYF+I QA YD +G YV +WLP+L +P ++
Sbjct: 424 SGNGNQPRYFNILGQASRYDEQGAYVKHWLPELSNVPADK 463
>gi|32477278|ref|NP_870272.1| DNA photolyase [Rhodopirellula baltica SH 1]
gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1]
Length = 526
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/446 (47%), Positives = 292/446 (65%), Gaps = 17/446 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFRNDLR +D+E L+A +++ V+C+DPR +TT GF +TG RA+FLIE
Sbjct: 42 ALVWFRNDLRTIDHEPFLRA-STADRCFAVHCIDPRQFETT-ELGFQRTGPFRARFLIEN 99
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DLR L + G L++R G+PE ++ L S AV+ E +EE + V++
Sbjct: 100 LTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCD 159
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q +++ + +G T+ H D++PF+ + P+++T FRK IE +C R +
Sbjct: 160 QHGIATH------------VAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPL 207
Query: 263 RIPSSF-GPPPSVVDWGSVPLIEQLELHSPKVSKGM--RFVGGESAALGRVNEYFWKKDL 319
P G P V+ G +P +E L L +P + +F GG++AA R+ EY W +D
Sbjct: 208 EEPIRIHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDR 267
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L+VYKETRN ML P+ S+KFSPWLA G +SPR I + V+ YE ERV N STYW++FEL+W
Sbjct: 268 LRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEEERVKNKSTYWMIFELLW 327
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFR+IS K+G +LF GG R + W D++LF W+DG TGYPL+DANM+EL TG+
Sbjct: 328 RDYFRWISRKHGATLFRAGGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGY 387
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++GIDWR GA WFE+ L+DYD SNYGNW Y AGVGND R R+F
Sbjct: 388 MSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARGFRFF 447
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+I KQ+++YD +GEY +WLP+L+ L
Sbjct: 448 NITKQSRDYDSQGEYAKHWLPELRDL 473
>gi|406662895|ref|ZP_11070977.1| Cryptochrome DASH [Cecembia lonarensis LW9]
gi|405553063|gb|EKB48369.1| Cryptochrome DASH [Cecembia lonarensis LW9]
Length = 474
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/446 (48%), Positives = 294/446 (65%), Gaps = 15/446 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
IVWFRNDLRV D+ L A +E V+PVYC DPR+ + KTG RA+FLIE
Sbjct: 5 VIVWFRNDLRVHDHAPLFYASQKAEEVIPVYCFDPRNFGKV-NLEIDKTGNHRARFLIES 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ +L+ NL+N G +L+I GKPEE++ +AK + A++ +E SEE VE + +
Sbjct: 64 VDNLKNNLVNLGGDLVILQGKPEELLVDIAKKYQVDAIFFSEEVTSEEKKVELNLEGH-- 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + K+T + W +++Y++ D+PF P+V+T FRK E V+ +
Sbjct: 122 ----AWKHGIKTTAY------WQSSLYNIQDLPFPVMQTPEVFTQFRKECEKFAKVQPTL 171
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLL 320
P P ++ D G +P + L P S + F GGE+ + R+ YFW+KDLL
Sbjct: 172 PTPKQIKFPNNLNDLGEMPELSTFGLKEPDHSSRSVLVFKGGETEGIRRLQAYFWEKDLL 231
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
KVYKETRN +LG DYS+KFS WL+ G +SPR+IYEEVK YE+ER N STYW++FEL+WR
Sbjct: 232 KVYKETRNGLLGSDYSSKFSAWLSMGCLSPRFIYEEVKRYEKERKKNQSTYWLIFELIWR 291
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
DYFRFI K+G +F LGG + KWS+++ F W +G TG P IDANM+EL+ TGFM
Sbjct: 292 DYFRFICKKHGEKVFQLGGIKNNVDKWSRNENYFWRWANGETGIPFIDANMRELNETGFM 351
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFLV D+GIDWR GA +FE+ L+DYD CSN+GNW Y AGVGNDPRE+RYF+
Sbjct: 352 SNRGRQNVASFLVNDLGIDWRWGAMYFESQLIDYDVCSNWGNWMYVAGVGNDPRENRYFN 411
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALP 526
I +QAQNYDR+G+Y+ +W+ +L +P
Sbjct: 412 IMRQAQNYDRKGDYIRHWIQELAEIP 437
>gi|170079261|ref|YP_001735899.1| DNA photolyase [Synechococcus sp. PCC 7002]
gi|169886930|gb|ACB00644.1| DNA photolyase [Synechococcus sp. PCC 7002]
Length = 514
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/452 (47%), Positives = 297/452 (65%), Gaps = 15/452 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W+R DLR+ D++ L +A + P YC DPR + FPKTGA R QFL E +
Sbjct: 7 LLWYRRDLRLHDHQPLQEALAQQAQIFPFYCFDPR-GFGSIGLDFPKTGAFRGQFLREAI 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
DLR+NL +G +L++R PE++IP L + + VY +E +EE VER +R+ LQ+
Sbjct: 66 QDLRQNLRAKGSDLIVRQDIPEKLIPDLCQQWQIDVVYCHREVTAEETRVERKLRQALQE 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ +++ WGTT++ D+PF + +P+V+T FRK +E + +
Sbjct: 126 QGV------------RVETFWGTTLHDPGDLPFGINEVPEVFTQFRKDVEKYAAIASPVP 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KG-MRFVGGESAALGRVNEYFWKKDLLK 321
P+ P P V G +P ++ L L P + +G + GGE+A + R+ YFW+ D LK
Sbjct: 174 TPTQLPPLPETVAPGEIPSLQDLGLPEPTIDPRGVLPLKGGETAGMKRLQAYFWEGDRLK 233
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
VYKETRN +LG DYS+KFSPWLA G +S RYI +V YE++R+AN+STYW++FEL+WRD
Sbjct: 234 VYKETRNGLLGADYSSKFSPWLALGCLSARYIAAQVAEYEQKRIANNSTYWLIFELLWRD 293
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YFR+I K+GN +F G + ++ W QD + FE WR G TG P +DANM+EL TGFMS
Sbjct: 294 YFRWICAKHGNQIFQPEGLQGVKIPWKQDHEAFELWRTGQTGIPFVDANMRELLYTGFMS 353
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SFL +++GIDWR GA WFE+ L+DYD CSN+GNW Y AGVGND R RYF+I
Sbjct: 354 NRGRQNVGSFLTKNLGIDWRWGAAWFESQLIDYDVCSNWGNWNYTAGVGNDARGFRYFNI 413
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
PKQA++YD +G+YV +WLP+L ALP E+ + P
Sbjct: 414 PKQAKDYDPQGDYVRHWLPELAALPGEQIHQP 445
>gi|97047983|sp|Q7UJB1.2|CRYD_RHOBA RecName: Full=Cryptochrome DASH
Length = 488
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/446 (47%), Positives = 292/446 (65%), Gaps = 17/446 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFRNDLR +D+E L+A +++ V+C+DPR +TT GF +TG RA+FLIE
Sbjct: 4 ALVWFRNDLRTIDHEPFLRA-STADRCFAVHCIDPRQFETT-ELGFQRTGPFRARFLIEN 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DLR L + G L++R G+PE ++ L S AV+ E +EE + V++
Sbjct: 62 LTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCD 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q +++ + +G T+ H D++PF+ + P+++T FRK IE +C R +
Sbjct: 122 QHGIATH------------VAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPL 169
Query: 263 RIPSSF-GPPPSVVDWGSVPLIEQLELHSPKVSKGM--RFVGGESAALGRVNEYFWKKDL 319
P G P V+ G +P +E L L +P + +F GG++AA R+ EY W +D
Sbjct: 170 EEPIRIHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDR 229
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L+VYKETRN ML P+ S+KFSPWLA G +SPR I + V+ YE ERV N STYW++FEL+W
Sbjct: 230 LRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEEERVKNKSTYWMIFELLW 289
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFR+IS K+G +LF GG R + W D++LF W+DG TGYPL+DANM+EL TG+
Sbjct: 290 RDYFRWISRKHGATLFRAGGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGY 349
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++GIDWR GA WFE+ L+DYD SNYGNW Y AGVGND R R+F
Sbjct: 350 MSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARGFRFF 409
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+I KQ+++YD +GEY +WLP+L+ L
Sbjct: 410 NITKQSRDYDSQGEYAKHWLPELRDL 435
>gi|124006560|ref|ZP_01691393.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
gi|123987973|gb|EAY27653.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
Length = 483
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/456 (49%), Positives = 302/456 (66%), Gaps = 17/456 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V IVWFRNDLRV DN+ L KA ++ +LPVYC DPR +TT GF KTGA RAQFLIE
Sbjct: 14 VKIVWFRNDLRVHDNDVLAKAASDADYLLPVYCFDPRQYETT-SLGFAKTGAHRAQFLIE 72
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LA+LR NL +G L+IR GKPEE+I LAK+ A AVYA +E +EE + + K L
Sbjct: 73 TLANLRANLEAKGSGLVIRIGKPEEVIADLAKATQAKAVYASQEIGTEEDATVKQLEKRL 132
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ N L+L+W + H D+PF +SL +V+T FRK IE VR
Sbjct: 133 WK------------NQVFLELLWTGNLIHPADLPFPLNSLSNVFTDFRKEIEQGLKVREA 180
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELH--SPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
+ +P + P V+ GS+P + L L +P + F GGE+A L R+ +Y W++ L
Sbjct: 181 VTLPDTLPLLPPGVEAGSLPKLTDLGLTHTTPDTRAVLHFKGGETAGLQRIEDYIWQRSL 240
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L+ YK+TRN +LG DYSTKFSPWLA+G+IS R +Y E+K YE++ V N STY ++FEL+W
Sbjct: 241 LQHYKDTRNGLLGADYSTKFSPWLANGAISARTVYHEIKKYEQQVVKNKSTYHLVFELLW 300
Query: 380 RDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQK-LFESWRDGCTGYPLIDANMKELSMT 437
R+YFR ++ KYG+ +F GG + K E + S ++K F+ W++G TG P IDANM+EL+ T
Sbjct: 301 REYFRLVARKYGHRIFVKGGIKAKGEVEMSSNRKRTFKRWKNGETGIPFIDANMRELNAT 360
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ S+L +D+ I+W GA +FE+ L+DYD SN+ NW Y AGVGNDPR+DR
Sbjct: 361 GFMSNRGRQNVASYLTKDLKINWVHGAMYFESQLIDYDVSSNWCNWNYVAGVGNDPRKDR 420
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
YF I QA YD +G YV +WLP+L ++P+ + + P
Sbjct: 421 YFDILSQANRYDNKGAYVKHWLPELASIPENKVHEP 456
>gi|390445350|ref|ZP_10233099.1| DASH family cryptochrome [Nitritalea halalkaliphila LW7]
gi|389662339|gb|EIM73907.1| DASH family cryptochrome [Nitritalea halalkaliphila LW7]
Length = 460
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/434 (50%), Positives = 287/434 (66%), Gaps = 15/434 (3%)
Query: 95 DNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRG 154
D+ L A+D V+PVYCVDPR T G PKTG+ RA+FLIE L DLR L++ G
Sbjct: 3 DHAPLFSAYDKDAEVIPVYCVDPRQFGTM-RLGLPKTGSFRAKFLIEALRDLRLRLIDLG 61
Query: 155 LNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKS 214
L I +GKPEE++P ++ A A+Y +E SEE+ VE+ V + ++++S
Sbjct: 62 AQLHILYGKPEEVLPDFLRAVEADALYFSEEITSEEVAVEKAVEAAAWKAGVATES---- 117
Query: 215 TNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSV 274
W T++H+ D+PF P+V+T FRK E +R P P
Sbjct: 118 --------FWQQTLFHISDLPFPVGQTPEVFTQFRKECEKFSKIRPAYPAPDELYYPFPD 169
Query: 275 VDWGSVPLIEQLELHSPKVS-KG-MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLG 332
V G +P + L L P+VS +G + F GGE AL R+ YFW+ D LKVYKETRN +LG
Sbjct: 170 VPKGDIPTLAVLGLEEPEVSDRGVLVFEGGEGPALARLQTYFWENDCLKVYKETRNGLLG 229
Query: 333 PDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGN 392
DYS+KFSPWLA G ISPRYIYEEV YE+ER N STYW++FEL+WRDYF+FI+ K+GN
Sbjct: 230 ADYSSKFSPWLALGCISPRYIYEEVARYEKERKKNQSTYWLVFELIWRDYFKFIAKKHGN 289
Query: 393 SLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFL 452
+F L G + KW +++ LF+ W +G TG P +DANM+EL+ TGFMSNRGRQ SFL
Sbjct: 290 KIFWLQGIKPNAEKWQRNEALFQRWVEGQTGIPFVDANMRELAETGFMSNRGRQNVASFL 349
Query: 453 VRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREG 512
V D+ IDWR GA +FE+ L+DYD CSN+GNW Y AGVGNDPRE+RYF+I KQA+NYD +G
Sbjct: 350 VNDLNIDWRWGASYFESVLIDYDVCSNWGNWMYVAGVGNDPRENRYFAILKQAKNYDAKG 409
Query: 513 EYVAYWLPQLKALP 526
+YV +W+P+L ALP
Sbjct: 410 DYVRHWVPELAALP 423
>gi|440712553|ref|ZP_20893169.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
gi|436442708|gb|ELP35819.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
Length = 488
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/446 (47%), Positives = 289/446 (64%), Gaps = 17/446 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFRNDLR +D+E L+A +++ V+C+DPR +TT GF +TG RA+FLIE
Sbjct: 4 ALVWFRNDLRTIDHEPFLRA-STADRCFAVHCIDPRQFETT-ELGFQRTGPFRARFLIES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DLR L + G L++R G+PE ++ L S AV+ E +EE + V++
Sbjct: 62 LTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPGTEEADTAESVQQLCD 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q +++ + +G T+ H D++PF+ S P+++T FRK IE +C R +
Sbjct: 122 QQGIATH------------VAYGDTLIHPDELPFEISDTPELFTDFRKEIEKQCEARSPL 169
Query: 263 RIPSSF-GPPPSVVDWGSVPLIEQLELHSPKVSKGM--RFVGGESAALGRVNEYFWKKDL 319
P G P V+ G +P +E L L +P + +F GG++AA R+ EY W +D
Sbjct: 170 EEPIRIQGALPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDR 229
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L+VYKETRN ML + S+KFSPWLA G +SPR I + V+ YE ERV N STYW++FEL+W
Sbjct: 230 LRVYKETRNGMLHQNDSSKFSPWLAQGCLSPRMIADHVRRYEEERVENKSTYWMIFELLW 289
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFR+IS K+G +LF G R + W D++LF W+DG TGYPL+DANM+EL TG+
Sbjct: 290 RDYFRWISRKHGATLFRASGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGY 349
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++GIDWR GA WFE+ L+DYD SNYGNW Y AGVGND R R+F
Sbjct: 350 MSNRGRQNVASFLTKNLGIDWRWGARWFESRLVDYDVASNYGNWNYAAGVGNDARGFRFF 409
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+I KQ+++YD +GEY +WLP L+ L
Sbjct: 410 NITKQSRDYDSQGEYAKHWLPALRDL 435
>gi|417302466|ref|ZP_12089566.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
gi|327541206|gb|EGF27750.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
Length = 488
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/446 (46%), Positives = 290/446 (65%), Gaps = 17/446 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VW+RNDLR +D+E L+A +++ V+C+DPR +TT GF +TG RA+FLIE
Sbjct: 4 ALVWYRNDLRTIDHEPFLRA-STADRCFAVHCIDPRQFETT-ELGFQRTGPFRARFLIES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DLR L + G L++R G+PE ++ L S AV+ E +EE + V++
Sbjct: 62 LTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPGTEEADTAESVQQLCD 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q +++ + +G T+ H D++PF+ + P ++T FRK IE +C R +
Sbjct: 122 QHGIATH------------VAYGDTLIHPDELPFEIADTPGLFTDFRKEIEKQCEARSPL 169
Query: 263 RIPSSF-GPPPSVVDWGSVPLIEQLELHSPKVSKGM--RFVGGESAALGRVNEYFWKKDL 319
P G P V+ G +P +E L L +P + +F GG++AA R+ EY W +D
Sbjct: 170 EEPIRIQGALPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDR 229
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L+VYKETRN ML P+ S+KFSPWLA G +SPR I + V+ YE ERV N STYW++FEL+W
Sbjct: 230 LRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRCYEEERVENKSTYWMIFELLW 289
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFR+IS K+G +LF G R + W D++LF W+DG TGYPL+DANM+EL TG+
Sbjct: 290 RDYFRWISRKHGVTLFRTSGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGY 349
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++GIDWR GA WFE+ L+DYD SNYGNW Y AGVGND R R+F
Sbjct: 350 MSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARGFRFF 409
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+I KQ+++YD +GEY +WLP+L+ L
Sbjct: 410 NITKQSRDYDSQGEYAKHWLPELRDL 435
>gi|326433957|gb|EGD79527.1| cryptochrome DASH [Salpingoeca sp. ATCC 50818]
Length = 552
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/464 (47%), Positives = 300/464 (64%), Gaps = 28/464 (6%)
Query: 83 AIVWFR-NDLRVLDNEALLKAWDSSE-MVLPVYCVDPRH---SQTTYHFGFPKTGALRAQ 137
A+VWFR +DLR+ D+E LL+A +S+ V+PVYC DPR + T FPK G R +
Sbjct: 12 AVVWFRGSDLRIHDHEPLLEAAKASKGHVVPVYCFDPRQVGPAAKTRCGQFPKCGWQRTR 71
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
F++EC+ DLR+NL G NL++R G+PEE+IP + GA V+ QKE CSEE VE +
Sbjct: 72 FIVECVEDLRRNLQRLGSNLVVRVGEPEEVIPDIVSITGATEVFGQKEVCSEETGVEHRL 131
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHS--SLPDVYTHFRKSIEA 254
K L L L WG T+ H DD+P++ S LP V++ FRK+ EA
Sbjct: 132 AKRLSV---------------PLTLRWGAITLCHRDDLPYERSCSDLPGVFSQFRKAAEA 176
Query: 255 KCTVRGCIRIPSSFGPPPSVV--DWGSVPLIEQLELHSPKVSKG---MRFVGGESAALGR 309
+R P S P P + D G VP + QL ++P + + FVGGE+ A R
Sbjct: 177 CVPIRPPRPPPPSLQPLPQPIAGDPGHVPPVTQLSPNAPAKADERGVLTFVGGETVARTR 236
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
V Y W D + YK+TRN ++G DYS+KFSPWLA G +S R+I+ EVK YERERV N+S
Sbjct: 237 VKHYLWDTDCIATYKDTRNGLVGADYSSKFSPWLAHGCVSARWIHSEVKRYERERVKNNS 296
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
TYW++FEL+WRDYFRF++L++G ++F GG ++ W +W++G TG+P +DA
Sbjct: 297 TYWLVFELLWRDYFRFVALQHGTAIFKEGGVQRKGIAWRHSPLDLSAWQEGRTGFPFVDA 356
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
NM+EL+ TGFMSNRGRQ SFL +D+ IDWR+GAEWFE+ L+D+DPC+NYGNW Y AG+
Sbjct: 357 NMRELAATGFMSNRGRQNVASFLTKDLLIDWRLGAEWFESLLIDHDPCANYGNWNYAAGI 416
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
GNDPR+ R+F++ +QA+ YD EYV W+P+LK LP + P
Sbjct: 417 GNDPRQGRHFNVIRQAKTYDPAAEYVHLWVPELKHLPAPFAHTP 460
>gi|449134940|ref|ZP_21770404.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
gi|448886419|gb|EMB16826.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
Length = 488
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/454 (45%), Positives = 295/454 (64%), Gaps = 17/454 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFRNDLR +D+E LL+A +++ V+C+DPR +T GF +TG RA+FLIEC
Sbjct: 4 ALVWFRNDLRTIDHEPLLRA-STADRCFAVHCIDPRQFETV-ELGFHRTGPFRARFLIEC 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DLR L + G L++R G+PE ++ L S +V+ E +EE + V++
Sbjct: 62 LTDLRSRLRSLGGELIVRVGRPETVLQDLLPSLSIDSVHFHYEPGTEEASTAESVQQLCD 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ +S+ + +G T+ H DD+PF+ + P ++T FRK IE +C R +
Sbjct: 122 RHGVSTH------------VAYGDTLIHPDDLPFEIADTPGLFTDFRKEIEKQCEARSPL 169
Query: 263 RIPSSF-GPPPSVVDWGSVPLIEQLELHSPKVSKGM--RFVGGESAALGRVNEYFWKKDL 319
P+ F G P V G + +E L L +P +F GG++A R+ +Y W +D
Sbjct: 170 DEPARFNGTLPEDVSAGDILALESLGLSTPPSDARCMNQFPGGQNAGQQRIEDYIWNEDR 229
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L++YKETRN ML P+ S+KFSPWLA G +SPR I ++V+ YE ERV N STYW++FEL+W
Sbjct: 230 LRIYKETRNGMLEPNDSSKFSPWLAHGCVSPRMIADQVRRYEEERVENKSTYWMIFELLW 289
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFR+IS K+G +LF G R ++ W D+ LF W++G TGYPL+DANM+EL TG+
Sbjct: 290 RDYFRWISRKHGATLFRASGLRGVDVDWKSDRDLFGRWQEGTTGYPLVDANMRELRTTGY 349
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++G+DWR GA+WFE+ L+DYD SNYGNW Y AGVGND R R+F
Sbjct: 350 MSNRGRQNVASFLTKNLGLDWRWGAQWFESQLVDYDVASNYGNWNYAAGVGNDARGFRFF 409
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+I KQ+++YD++GEY +WLP+L+ L + + P
Sbjct: 410 NITKQSRDYDKQGEYAKHWLPELRDLSETEIHEP 443
>gi|298708262|emb|CBJ48325.1| cryptochrome 2 [Ectocarpus siliculosus]
Length = 571
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/474 (46%), Positives = 302/474 (63%), Gaps = 26/474 (5%)
Query: 84 IVWFR-NDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
IVWF+ +DLR+ D+E L A S V V+C+D R T G K A R +FL+E
Sbjct: 26 IVWFKYSDLRLEDHEPLALAHRESAQVAHVFCIDDRWFGQTRR-GTSKMSAARCRFLLES 84
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAV-----YAQKETCSEELNVERLV 197
+ADLR L RG +LL+R G PE++IP+LA G +V +A + CSEE +V V
Sbjct: 85 VADLRARLRERGSDLLVRRGHPEDVIPALAARLGGGSVAGVTLFAHTDVCSEEADVHAAV 144
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAK- 255
+ L + + + +K WG T++ + D+PFD S +P+++T FRKS+E+K
Sbjct: 145 KSALAAASSAGRGGGAAV---AVKEAWGNTLHDVADLPFDFPSGVPEIFTQFRKSVESKY 201
Query: 256 -CTVRGCIRIPSSFGPPPSVVDW--------GSVPLIEQLELHSPKVSKG---MRFVGGE 303
C +R + +PS F P P+ G++P E+L L + F GGE
Sbjct: 202 SCKMRPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGTAPERDARSVFPFNGGE 261
Query: 304 SAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE 363
+A L RV Y W +D L+ YK TRN +LG +S+KFSPWLA G +SPR I +E++ YE +
Sbjct: 262 TAGLRRVQSYIWDEDRLREYKVTRNGLLGSGFSSKFSPWLALGCLSPRTIVKEIRKYETD 321
Query: 364 RVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGC 421
R+ANDSTYW++FEL+WRD+FR+ ++K GNS+FHLGGPR+ +W D E+W++G
Sbjct: 322 RIANDSTYWLIFELLWRDFFRYSAVKNGNSIFHLGGPRRDTGRQRWLDDAGSLEAWKEGE 381
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TGYPLIDANM+EL +GFMSNRGRQ+ SF RD+ +DWR+GAE FE LLD+DP SN+G
Sbjct: 382 TGYPLIDANMRELKASGFMSNRGRQVVASFFTRDLQMDWRLGAEHFEEYLLDHDPASNWG 441
Query: 482 NWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGG 535
NW Y AGVG+DPRE RYF+I KQA+ YD EG Y+ +WLP+L ALP PGG
Sbjct: 442 NWNYVAGVGSDPREGRYFNIEKQAKTYDAEGAYMRHWLPELAALPTTALQTPGG 495
>gi|373954151|ref|ZP_09614111.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
gi|373890751|gb|EHQ26648.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
Length = 493
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/453 (47%), Positives = 286/453 (63%), Gaps = 17/453 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ DNE L++A ++ VLPV+C D + + T +G KTG R +FL+E +
Sbjct: 15 LVWFRNDLRIHDNEILVEALRKADKVLPVFCFDNFYFKIT-RYGTRKTGDFRTRFLLEAV 73
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLRK L G L++R G P +IIP LA+ + VY +E EE ++ V L +
Sbjct: 74 ADLRKTLQQHGAELIVRSGDPVDIIPQLAEEYHVSEVYHHREVAFEETDISAKVEAVLWK 133
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
L+ LK G T YH +D+PF +PDV+T FRK +E ++R C
Sbjct: 134 KKLN------------LKHFIGHTFYHKEDLPFPIKDIPDVFTTFRKKVERDSSIRPCFE 181
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSP--KVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
P + PP + G +P ++QL P + F GGE+ AL R++EYFW+ D LK
Sbjct: 182 TPGNISIPP-IDHPGEIPTLQQLGFDEPVDDSRAVLHFKGGETEALKRLHEYFWESDCLK 240
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK TRN +LG DYS+KFSPWL+ G +S R +Y EVK YE+ER ANDSTYW++FEL+WRD
Sbjct: 241 TYKTTRNGLLGADYSSKFSPWLSVGCLSVRQVYWEVKRYEQERGANDSTYWLIFELLWRD 300
Query: 382 YFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
YFRF+ KYGN F GG + + + +LFE W+ G TG P IDANM+EL+ TGFM
Sbjct: 301 YFRFMFKKYGNQFFKAGGFKGQAPEVVPHEDELFEKWKAGETGVPFIDANMRELNATGFM 360
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFLV+D+ ++W GA +FE L+DY P SN+GNW Y AGVGNDPRE+R+ +
Sbjct: 361 SNRGRQNVASFLVKDLKVNWTKGAAYFEEKLIDYSPASNWGNWAYVAGVGNDPRENRHLN 420
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+ KQA YD +GEYV W+P+L +P + P
Sbjct: 421 VIKQAIEYDPKGEYVKTWIPELTMIPAKLVQTP 453
>gi|298708263|emb|CBJ48326.1| cryptochrome 3 [Ectocarpus siliculosus]
Length = 549
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/479 (45%), Positives = 303/479 (63%), Gaps = 27/479 (5%)
Query: 79 GKGVAIVWFR-NDLRVLDNEALLKAWDSSEMVLPVYCVDPR---HSQTTYHFGFPKTGAL 134
G + +VWF+ DLR+ D+E L A +S V V+C+D R HS+ G + A
Sbjct: 20 GDTIGVVWFKCTDLRLEDHEPLALAHRNSSHVAHVFCIDDRWFGHSRR----GTRRMSAA 75
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA----VYAQKETCSEE 190
R +FL+E +ADL+ L +G +LLIR G PE IP++A G+ A VYA + CSEE
Sbjct: 76 RCRFLLESVADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASAVTVYAHPDLCSEE 135
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFR 249
+V V+ L V + +T + +WG T++ D+P+D + LP+V+T FR
Sbjct: 136 NDVHAAVKSALSLVGSAGGVGGDATG-VSVTEVWGNTLHDPSDLPYDFPNGLPEVFTPFR 194
Query: 250 KSIEAKCTVRGCIRIPSSFGPPPSVVDWGSV--------PLIEQLELHSP---KVSKGMR 298
K++E C +R + +PS F P P+ + +V P E+L L + +
Sbjct: 195 KAVEPNCKIRSPVPLPSPFRPLPAGLHDNAVTPTLTVAIPTTEELGLGTAPERDARSVLH 254
Query: 299 FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK 358
F+GGE+A L RV Y W++D L+ YK TRN +LG +S+KFSPWLA G +SPR I +E++
Sbjct: 255 FIGGETAGLRRVQTYIWEEDHLREYKVTRNGLLGGGFSSKFSPWLALGCLSPRTIVKEIR 314
Query: 359 SYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK--WSQDQKLFES 416
YE +R+ANDSTYW++FEL+ RD+FR+ ++KYGN++FHLGG R+ + W D L +
Sbjct: 315 KYETDRIANDSTYWLIFELLVRDFFRYSAVKYGNAIFHLGGSRRDSDRQTWRDDAGLLAA 374
Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDP 476
W++G TGYP +DANM+EL +GFMSNRGRQ+ SF +D+ +DWR+GAE FE LLDYDP
Sbjct: 375 WKEGRTGYPFVDANMRELKASGFMSNRGRQVVASFFTKDLEMDWRLGAEHFEEYLLDYDP 434
Query: 477 CSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGG 535
SNYGNW Y AGVG DPREDRYFS+ KQA+ YD +G+YV +WLP+L L E GG
Sbjct: 435 ASNYGNWNYVAGVGFDPREDRYFSVEKQARTYDADGDYVRHWLPELAMLTTEALQSAGG 493
>gi|448611990|ref|ZP_21662420.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
gi|445742751|gb|ELZ94245.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
Length = 486
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/462 (47%), Positives = 290/462 (62%), Gaps = 24/462 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT-----TYHFGFPKTGALRA 136
+++VWFR DLR+ DNEAL++A +++ V+PVYC DP T F F KTGA RA
Sbjct: 5 ISLVWFRRDLRLHDNEALVEAC-AADRVVPVYCFDPGDYGTRPFGGDDSFDFEKTGAHRA 63
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+F +E +ADLR +L +R +LL+R G+PE +IP +A + A +V +EE+ VE
Sbjct: 64 RFRLESVADLRSSLRDRDSDLLVRVGRPESVIPDVAAAVDAASVTMHTWPTAEEMQVEAA 123
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V++ + + + WG T+ HLDD+P + +PD YT FR ++E
Sbjct: 124 VKREHRDADIDP------------RRFWGHTLTHLDDLPMAYDDVPDTYTTFRNAVERDA 171
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLE--LHSPKVSKG--MRFVGGESAALGRVNE 312
TVR + IP P D GS+P I L+ L +P+ +RF GGE+AAL RV
Sbjct: 172 TVREPLHIPEIPAFPADAPDPGSIPSIADLDETLTTPRFDDRGVLRFDGGETAALDRVES 231
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
Y W+ D L+ YKETRN MLG DYS+KFSPWL G +SPRY+ EV+ YE RV+NDSTYW
Sbjct: 232 YIWEGDHLREYKETRNRMLGADYSSKFSPWLNEGCLSPRYVQSEVERYEDVRVSNDSTYW 291
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
+ FEL WRD+F+F K+G F GG R + + W D FE W G TG P +DANM
Sbjct: 292 LTFELRWRDFFQFQFAKHGTEFFRRGGIRDRTDIDWRTDDAQFERWAAGETGIPFVDANM 351
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL+ TG+MSNRGRQ A SFL ++ +DWR GA +FET L+DYDP SNYGNW Y AGVGN
Sbjct: 352 RELNATGYMSNRGRQNAASFLANNLRLDWRRGAAYFETQLVDYDPASNYGNWAYIAGVGN 411
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D R DRYF+I KQA+ YD +YV +WLP+L LP E + P
Sbjct: 412 DSR-DRYFNIVKQARQYDANADYVKHWLPELDGLPAEYAHEP 452
>gi|448734435|ref|ZP_21716661.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
gi|445800483|gb|EMA50838.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
Length = 479
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/455 (47%), Positives = 280/455 (61%), Gaps = 17/455 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+VWFR DLR DNEAL++A D + VLPVYC DPR T F PKTG RA+FL++
Sbjct: 4 TAVVWFRTDLRTHDNEALVRAVDEYDTVLPVYCFDPREFDETM-FDLPKTGPYRARFLVD 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ DLR++L G +LL+R GK E ++P LA GA V+ +EE +E V L
Sbjct: 63 SVRDLRRSLRQAGGDLLVRQGKTENVVPQLAAEHGADIVHYHTTPATEERAIENGVTDGL 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + S+ WG T+YH++D+P + D +T +R+++E TVR
Sbjct: 123 DEHGIDSRD------------FWGKTLYHVEDLPTRVERIDDTFTPWRQTVEDGATVRDP 170
Query: 262 IRIPSSFGPPPSVVDW-GSVPLIEQL--ELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
+ P+S P S D G++P L E P + FVGGESA L R+ EY W+ D
Sbjct: 171 LDAPTSIVLPESAGDEPGTIPTPGDLGIEEREPDDRAAIEFVGGESAGLRRLTEYVWEGD 230
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L+ YKETRN +LG DYS+KFS WLA G +SPR I+E V+ YERERVANDSTYW++FEL+
Sbjct: 231 HLREYKETRNGLLGADYSSKFSAWLAVGCLSPRLIHEHVERYERERVANDSTYWLVFELL 290
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRD+ F K+G F G R + +W D+ FE W G TG P +DANM+EL+ TG
Sbjct: 291 WRDFMTFQFEKHGADFFTSTGIRDVTKEWRHDETAFERWAAGDTGVPFVDANMRELNETG 350
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
FMSNRGRQ SFL +GIDWR GA +FE+ L+DYD CSN+GNW Y AGVGND R D Y
Sbjct: 351 FMSNRGRQNVASFLADALGIDWRKGAAYFESRLVDYDVCSNWGNWAYQAGVGNDSR-DGY 409
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
F + Q + YD Y+ +WLP+L ALP + + P
Sbjct: 410 FDVLGQGERYDSNAAYIRHWLPELDALPADACHEP 444
>gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
gi|97047786|sp|Q3IPX9.1|CRYD_NATPD RecName: Full=Cryptochrome DASH
gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
Length = 474
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/448 (47%), Positives = 281/448 (62%), Gaps = 19/448 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDP-RHSQTTYHFGFPKTGALRAQFLI 140
A+VWFR+DLRV DN L A ++E V+PVY DP R++++ Y G PKTG RA F
Sbjct: 3 TAVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEY--GPPKTGGHRAVFRR 60
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ +ADLR +L +RG +LL+R G+P ++P LA+ GA AVYAQ + +EE V
Sbjct: 61 QAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASA 120
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L ++ L+ W T+YH DD+P + + D +T +RK EA TVR
Sbjct: 121 LDDAGIA------------LRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRD 168
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKD 318
P + P P + G VP +E L + P + F GGESA RV Y W+ D
Sbjct: 169 PRSAPETV-PTPDGLTPGPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESYIWEGD 227
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L+ YK TRN +LG DYS+KFSPWLA+G +SPR+++ EV+ YE ERVAN+ TYW++FEL
Sbjct: 228 HLREYKTTRNGLLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERVANEDTYWLVFELA 287
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRD+F+F KYG + F GG R+ W +D+ LFE W DG TG P +DANM+EL+ TG
Sbjct: 288 WRDFFQFQFEKYGATFFKPGGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTG 347
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ SFL +GIDWR GA +FE L+DYD SN+GNW Y AGVGND R DRY
Sbjct: 348 YMSNRGRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVGNDSR-DRY 406
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALP 526
F + QA+ YD + EY+ WLP+L ALP
Sbjct: 407 FDVRSQAERYDSDAEYITTWLPELAALP 434
>gi|383622627|ref|ZP_09949033.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|448699507|ref|ZP_21699315.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|445780215|gb|EMA31115.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
Length = 474
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/481 (44%), Positives = 299/481 (62%), Gaps = 34/481 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+VWFR+DLR+ DN L A +++ V+P+Y VDPR T +G K GA RA+F E
Sbjct: 3 TAVVWFRDDLRITDNPTLADAVTAADEVVPLYVVDPRKRGET-EYGTEKLGAHRARFRRE 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L +LR L +RG +L +R G+PE ++P +A A AVYAQ + +EEL E VR+ L
Sbjct: 62 SLLELRAGLQDRGGDLFVRRGRPETVLPEVAGRVDADAVYAQTKPATEELETEVGVRETL 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
V + W T+YH+ D+P + + D +T +RK++E +C+VR
Sbjct: 122 PDDV-------------SFERRWTHTLYHVSDLPTSYERMQDTFTPWRKAVERECSVRDL 168
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDL 319
+ P + P P + G VP + + L +P +RF GGESA R+ EYFW++D
Sbjct: 169 VAPPDAV-PTPDLPA-GDVPTVSEYGLEAPTDDDRAVLRFEGGESAGKRRLEEYFWEEDR 226
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L+ YKETRN +LG YS+KFSPWLA+G +SPR+I+EEV+ YE ERV+N+ TYW++FEL+W
Sbjct: 227 LREYKETRNGLLGAAYSSKFSPWLAAGCLSPRWIHEEVRRYEDERVSNEDTYWLVFELLW 286
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RD+F+F K+G+ FH G R +E W +D++ F+ W +G TG P +DANM+EL+ TG+
Sbjct: 287 RDFFQFQFCKHGSRFFHPNGIRDVEKAWERDREAFDRWANGETGIPFVDANMRELNRTGY 346
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +GIDWR GA +FE L+DYD SN+GNW Y AGVGND R D YF
Sbjct: 347 MSNRGRQNVASFLADALGIDWRWGAAYFEERLVDYDVASNWGNWAYQAGVGNDSR-DNYF 405
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPK------------ERRNF---PGGSYIEQIVSL 544
+ QA+ YD +GEYV WLP+L+ +P ER + PG Y E I+ L
Sbjct: 406 DVLSQAEYYDPDGEYVTTWLPELEGVPPEAVHRPWELSEGERAEYGVRPGVDYPEPIIDL 465
Query: 545 K 545
+
Sbjct: 466 E 466
>gi|332662834|ref|YP_004445622.1| DASH family cryptochrome [Haliscomenobacter hydrossis DSM 1100]
gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
Length = 454
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/453 (46%), Positives = 289/453 (63%), Gaps = 18/453 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AIVWFR DLR+ DNEAL A ++ V+PV+ D R + FGFPKTG RAQF+IE
Sbjct: 7 AIVWFRQDLRLHDNEALQDALRNAYEVIPVFIFDERTFKGKTSFGFPKTGKYRAQFIIES 66
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ADLR++L +L++R GK E+I+ S+AK ++ +E +EE ++ + L
Sbjct: 67 VADLRQSLRKLNSDLIVRVGKTEDILFSMAKECKTSWIFCNRERTAEEARIQDELENRLW 126
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + N G +Y+ D+PF PDV+T FRK +E VR +
Sbjct: 127 SIGQEMRYNR------------GKMLYYTADLPFPIQHTPDVFTQFRKEVERIVPVREPL 174
Query: 263 RIPS-SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR----FVGGESAALGRVNEYFWKK 317
P +F P G +P +E+L + +K R F GGE+ + R+ Y W+
Sbjct: 175 SKPDRTFNPLSFEFPAGDIPSLEELGHNVDDFAKDPRAVLSFKGGETEGIKRLQYYLWET 234
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
DL+K YKETRN +LG DYS+K SPWLA G +SP+ IY E+K YE +R AN+STYW+ FEL
Sbjct: 235 DLIKNYKETRNGLLGGDYSSKLSPWLAQGCLSPKLIYHELKKYEAQRGANESTYWLFFEL 294
Query: 378 MWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
+WRD+FRF+ KYGN +F +GG R + + +W+++ ++ + W DG TG P IDANM EL
Sbjct: 295 LWRDFFRFMGKKYGNKIFQIGGTRGQADPRWTENPQVLQKWIDGTTGVPFIDANMLELKH 354
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TGFMSNRGRQ SFLV+D+ I+W+MGAE+FE+ L+DYD CSN+GNW Y AGVG+DPRED
Sbjct: 355 TGFMSNRGRQNVASFLVKDLNINWQMGAEYFESILIDYDVCSNWGNWNYIAGVGSDPRED 414
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKALPKER 529
RYF+ QA+ YD G+YV +WLP+L LP ++
Sbjct: 415 RYFNTLTQAKRYDPHGDYVKHWLPELADLPADK 447
>gi|448729303|ref|ZP_21711620.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
gi|445795250|gb|EMA45779.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
Length = 485
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/462 (46%), Positives = 282/462 (61%), Gaps = 25/462 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRH-SQTTYHFGFPKTGALRAQFLI 140
A+VWFR DLR DNEAL++A D + VLPVYC DPR + T FG KTG RAQFLI
Sbjct: 4 TAVVWFRTDLRTHDNEALVRAVDEYDTVLPVYCFDPREFGEAT--FGLAKTGPYRAQFLI 61
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
E + DLR +L G +L +R GKPE ++ LA GA V+ +EE VE V
Sbjct: 62 ESVRDLRGSLREAGSDLFVRQGKPENVVSELAAEHGADIVHYHTTPATEERAVEASVTDG 121
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L + +SS+ WG T+YH++D+P + D +T +R+++E TVR
Sbjct: 122 LDEHGISSRG------------FWGKTLYHIEDLPTRVERIDDTFTPWRRTVEDGATVRD 169
Query: 261 CIRIPSSFGPPPSVVDW-------GSVPLIEQL--ELHSPKVSKGMRFVGGESAALGRVN 311
+ P+S P +V D G++P L E H P + F GGESA L R+
Sbjct: 170 PLDAPTSVTLPETVSDAEGAGDEPGTIPTPGDLGIEEHEPDERAAIDFAGGESAGLRRLT 229
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
EY W+ D L+ YKETRN +L DYS+KFS WLA G +SPR I+E V+ YE ER++NDSTY
Sbjct: 230 EYVWEGDHLREYKETRNGLLDADYSSKFSAWLALGCLSPRLIHEHVERYECERISNDSTY 289
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
W++FEL+WRD+ F K+G+ F G R +E W +D+ FE W G TG P +DANM
Sbjct: 290 WLVFELLWRDFMTFQFEKHGSDFFMPTGIRDIEKSWQRDEAAFERWAAGETGVPFVDANM 349
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL+ TGFMSNRGRQ SFL +GIDWR+GA +FE+ L+DYD CSN+GNW Y AGVGN
Sbjct: 350 RELNETGFMSNRGRQNVASFLADALGIDWRLGAAYFESRLVDYDVCSNWGNWAYQAGVGN 409
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D R D YF + Q + YD Y+ +WLP+L ALP + + P
Sbjct: 410 DSR-DGYFDVLDQGKRYDPNAAYIRHWLPELDALPADACHEP 450
>gi|83814331|ref|YP_445305.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
gi|83755725|gb|ABC43838.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
Length = 483
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/451 (46%), Positives = 283/451 (62%), Gaps = 18/451 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+VW RNDLRV D+ L A D + V+PVYC DPRH TT F PK ++RA+FL E
Sbjct: 4 TALVWIRNDLRVRDHAPLRYAADHYDQVIPVYCFDPRHFGTTM-FDLPKMSSIRARFLRE 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ DLR ++ + G +L++R G+PE+I+P L + GA+ V +E EE +VE V L
Sbjct: 63 SVQDLRDSVQDLGADLVVRGGRPEDILPELVRQTGANEVLQFQEIGGEEEDVETAVEDAL 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRG 260
+ + WG T+YH+DD+PFD +P VYT+FRK++E K TVR
Sbjct: 123 RDTGATP------------GFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRP 170
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKV--SKG-MRFVGGESAALGRVNEYFWKK 317
+ P S P P ++ GS+P +++L +G + F GGES R++EY W+
Sbjct: 171 TLDAPDSLLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIWRG 230
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
D LK YK TRN +LG +YS KFS WLA G I+PR I+EEV+ YE +RV N STYW+ FEL
Sbjct: 231 DFLKKYKATRNGLLGANYSAKFSAWLAHGCITPRQIHEEVERYEDQRVDNKSTYWMKFEL 290
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRD+F +++ K G LF GG + W K FE W G TG P +DANM+EL+ T
Sbjct: 291 IWRDFFSYVTWKAGERLFRPGGINGNDIDWRYYDKSFERWAAGTTGIPFVDANMRELNRT 350
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQ S L + + +DWRMGA +FE+ L+DYD SN+GNW Y + VGNDPR R
Sbjct: 351 GYMSNRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAYNSRVGNDPRA-R 409
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
YF+I KQA+ YD GEYV YWLP+L +P +
Sbjct: 410 YFNIVKQAKRYDENGEYVRYWLPELADVPDK 440
>gi|294507180|ref|YP_003571238.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
gi|294343508|emb|CBH24286.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
Length = 483
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/451 (46%), Positives = 283/451 (62%), Gaps = 18/451 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+VW RNDLRV D+ L A D + V+PVYC DPRH TT F PK ++RA+FL E
Sbjct: 4 TALVWIRNDLRVRDHAPLRYAADHYDQVIPVYCFDPRHFGTTM-FDLPKMSSIRARFLRE 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ DLR ++ + G +L++R G+PE+I+P L + GA+ V +E EE +VE V L
Sbjct: 63 SVQDLRDSVQDLGADLVVRRGRPEDILPELVRQTGANEVLQFQEIGGEEEDVETAVEDAL 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRG 260
+ + WG T+YH+DD+PFD +P VYT+FRK++E K TVR
Sbjct: 123 RDTGATP------------GFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRP 170
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKV--SKG-MRFVGGESAALGRVNEYFWKK 317
+ P S P P ++ GS+P +++L +G + F GGES R++EY W+
Sbjct: 171 TLDAPDSLLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIWRG 230
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
D LK YK TRN +LG +YS KFS WLA G I+PR I+EEV+ YE +RV N STYW+ FEL
Sbjct: 231 DFLKKYKATRNGLLGANYSAKFSAWLAHGCITPRQIHEEVERYEDQRVDNKSTYWMKFEL 290
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRD+F +++ K G LF GG + W + FE W G TG P +DANM+EL+ T
Sbjct: 291 IWRDFFSYVTWKAGERLFRPGGINGNDIDWRYYDESFERWAAGTTGIPFVDANMRELNRT 350
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQ S L + + +DWRMGA +FE+ L+DYD SN+GNW Y + VGNDPR R
Sbjct: 351 GYMSNRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAYNSRVGNDPRA-R 409
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
YF+I KQA+ YD GEYV YWLP+L +P +
Sbjct: 410 YFNIVKQAKRYDENGEYVRYWLPELADVPDK 440
>gi|449669082|ref|XP_002166544.2| PREDICTED: cryptochrome DASH-like [Hydra magnipapillata]
Length = 526
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 218/456 (47%), Positives = 288/456 (63%), Gaps = 27/456 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I W RNDLR+ DNE L A VLP+YC DP H + T+HFGF KTG RA+ +++ +
Sbjct: 11 IYWIRNDLRLHDNECLNFACRDGSHVLPLYCFDPDHYKLTHHFGFLKTGIHRAKLILDAV 70
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLA----KSFGAHAVYAQKETCSEELNVERLVRK 199
+ LR +L +G NL+I +P+E I L ++ ++ QKE EE +VE V K
Sbjct: 71 SGLRNSLQKKGSNLVISKHRPKEAIEKLILECEQTAPVTSIVFQKEITKEETDVEASVFK 130
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
V S+ Q+ WG+T+YH++DIPF + +P+ YT FRK +E KC VR
Sbjct: 131 -----VCDSKG-------IQVLSFWGSTLYHIEDIPFQINQIPNTYTLFRKGVE-KCPVR 177
Query: 260 GCIRIPSSFGPPPSVVDW--GSVPLIEQLELHSPKVSKGMR----FVGGESAALGRVNEY 313
IP P++ ++ G VPL+ +L + +R F G E A+ R+NEY
Sbjct: 178 KLNPIPDKISSLPNLKNFPLGEVPLLNELGFDKNEYEIDVRSVFPFNGSEVDAVKRLNEY 237
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA--NDSTY 371
W + YKETRN +LG DYSTKFSPWLA GS+SPR IY ++K +E ++ NDSTY
Sbjct: 238 LWGNSAILTYKETRNGLLGKDYSTKFSPWLALGSLSPRMIYHKIKDFEEQKKIKENDSTY 297
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE--YKWSQDQKLFESWRDGCTGYPLIDA 429
WV+FEL+WRDYF+FI K+GN +F GG + + + W QD LF W +G TG P +DA
Sbjct: 298 WVVFELIWRDYFKFICSKHGNKVFFKGGLKGGKGPWTWKQDLNLFMKWANGDTGIPFVDA 357
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
NMKEL TG+MSNRGRQ SFLV+D+ +DWRMGAEWFE+ L+D D CSNYGNW Y AG+
Sbjct: 358 NMKELLATGWMSNRGRQNVASFLVKDLNLDWRMGAEWFESLLIDSDVCSNYGNWNYIAGI 417
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
GNDPR +R F++ KQA +YD EG+YV WLP LK L
Sbjct: 418 GNDPRSNRKFNVIKQAADYDEEGDYVRTWLPVLKKL 453
>gi|399576573|ref|ZP_10770328.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
gi|399238017|gb|EJN58946.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
Length = 492
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/470 (45%), Positives = 288/470 (61%), Gaps = 34/470 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP------KTGALR 135
A++WFR DLR+ DN L+ A +E +LPVYC DPR T FG P KTG R
Sbjct: 5 TALIWFRRDLRLHDNPVLVDA-ARAEALLPVYCFDPREYGTA-DFGGPDSFRYEKTGGHR 62
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER 195
AQF E + DLR +L G +LL+ HG+PE ++P+L + A AV+ Q SEE ER
Sbjct: 63 AQFRRESVTDLRDSLRAAGSDLLVAHGRPETVLPALVSTTDADAVFFQTLPTSEERTTER 122
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
V L++ ++ + +W T+ HL D+P ++ + D +T FRK +E+
Sbjct: 123 AVTARLREEGVA------------VHRLWTHTLVHLADLPTPYTDIDDTFTPFRKRVESS 170
Query: 256 CTVRGCIRIPSSFGPPPSVVD------WGSVPLIEQLELHSPKVS--KGMRFVGGESAAL 307
T R + +P+ P PS + ++P + L + +P V + + F GGESA
Sbjct: 171 STARDPLDVPT-LPPLPSATSSTKRATFETLPSLSTLGVENPPVDERRSLDFDGGESAGR 229
Query: 308 GRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN 367
R+ Y W D L+VYKETRN +LG DYS+KFSPWL G +SPR++ EV YE ERVAN
Sbjct: 230 DRLAAYLWDHDCLRVYKETRNGLLGADYSSKFSPWLNEGCLSPRFVNAEVDRYEAERVAN 289
Query: 368 DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQD---QKLFESWRDGCTG 423
DSTYW+LFEL+WRD+F+F LK+GN F GG R + + +W D + F W G TG
Sbjct: 290 DSTYWLLFELLWRDFFQFQFLKHGNRFFARGGIRNRTDIEWRTDGEAETAFGRWTAGETG 349
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
P +DA M+EL+ TGF+SNRGRQ A SFL ++ +DWR GA +FET L+DYDPCSNYGNW
Sbjct: 350 VPFVDATMRELNRTGFVSNRGRQNAASFLANNLRVDWRWGAAYFETQLVDYDPCSNYGNW 409
Query: 484 TYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
Y AGVGND R DRYF + KQA+ YD + YV +WLP+L ALP E + P
Sbjct: 410 AYIAGVGNDSR-DRYFDVVKQAKQYDEQAAYVTHWLPELAALPPETVHEP 458
>gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
Length = 430
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/441 (45%), Positives = 279/441 (63%), Gaps = 18/441 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
AIVWF+ DLRV DNE ++KA SE ++PVYC D H +TT +GF KTG+ RAQFL+E
Sbjct: 4 TAIVWFKTDLRVEDNETIIKAILQSEQIIPVYCFDDSHFETT-KYGFKKTGSFRAQFLLE 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L DL KNL G L+I GKPE IP +AK + A V++++E EE E++V+ L
Sbjct: 63 SLQDLDKNLRAIGSGLVITKGKPEIEIPKIAKEYKAQKVFSKREVSFEEKKTEKMVQNEL 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ +L+ +T+YH +D+PF ++PDV+T+FRK E T+R
Sbjct: 123 FKL------------RCELETFSTSTLYHAEDLPFSIRNIPDVFTNFRKKTEQDATIRTV 170
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK--GMRFVGGESAALGRVNEYFWKKDL 319
+ P P + S+P +E L L + ++F GGE+ A+ R+N YF++ +
Sbjct: 171 FKKPEKINSPK--ITTLSLPTLEDLGLECKTIDSRAAIQFKGGETEAINRLNHYFFQTNS 228
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
+ YK+TRN M+G +YS+KFSPWLA G ISPR+IY E+K YE + ANDS+YW++FEL+W
Sbjct: 229 ISNYKKTRNGMVGENYSSKFSPWLALGCISPRFIYNEIKKYELQFGANDSSYWLIFELLW 288
Query: 380 RDYFRFISLKYGNSLF-HLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
RD+FRF+ KY F +LG + S + KLF W +G T I+ANM EL +TG
Sbjct: 289 RDFFRFMFKKYQTKFFIYLGIKTEKGNSKSLNDKLFSQWINGKTKSDFINANMLELKLTG 348
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
FMSNRGRQ S+ ++ +DWR+GA +FE L+DYD CSN+GNW Y AGVGNDPR RY
Sbjct: 349 FMSNRGRQNVASYFCNELNMDWRLGAAYFEEQLIDYDVCSNWGNWAYLAGVGNDPRGHRY 408
Query: 499 FSIPKQAQNYDREGEYVAYWL 519
F+I KQA +YD+ E+ WL
Sbjct: 409 FNIEKQASDYDKNKEFRELWL 429
>gi|448592440|ref|ZP_21651547.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
gi|445731445|gb|ELZ83029.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
Length = 496
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/472 (44%), Positives = 286/472 (60%), Gaps = 34/472 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPR-HSQTTY----HFGFPKTGALRA 136
A+VWFR DLR+ DNEAL+ A ++ V+PVYC DPR + Q +Y F F KTG R
Sbjct: 5 TALVWFRRDLRLHDNEALVDAC-GADQVVPVYCFDPRDYGQQSYGGPGSFDFRKTGFHRL 63
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+F +E +ADLR +L +RG +L++R G+PE ++P +A + GA +V EE VE
Sbjct: 64 RFRLESVADLRSSLRDRGSDLVVRVGRPEAVLPDVATAVGADSVSMHTWPTPEERQVESA 123
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V++ L V + S + WG T+ H DD+P D +LPD YT FRK++E
Sbjct: 124 VQQALDDVGVES------------RRFWGHTLTHPDDLPMDLDALPDTYTTFRKAVENDA 171
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLE-------------LHSPKVSKGMR-FVGG 302
++R + P P SV + G++P + L+ L SP + F GG
Sbjct: 172 SIREPLHTPDLPARPDSVPEPGAIPALSDLDGDVSNAAQVEDEPLASPNDEQATSLFEGG 231
Query: 303 ESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYER 362
E+A RV Y W+ D L+ YKETRN ++G DYS+KFSPWL G +SPRY+ EV+ YE
Sbjct: 232 ETAGRERVESYIWEGDHLREYKETRNGLVGLDYSSKFSPWLNEGCLSPRYVQSEVERYED 291
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGC 421
RV+NDSTYW+ FEL WRD+F+F + K+G F G R + + W D F+ W G
Sbjct: 292 VRVSNDSTYWLTFELRWRDFFQFQTAKHGGEFFQRSGIRNRTDIDWRDDDAQFDRWAAGE 351
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG P +DA M+EL+ TG++SNR RQ A SFL ++ +DWR GA +FET L+DYDP SNYG
Sbjct: 352 TGIPFVDAAMRELNATGYVSNRARQNAASFLANNLRLDWRRGAAYFETQLVDYDPASNYG 411
Query: 482 NWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
NW Y AGVGND R DRYF I QA+ YD + E+V +WLP+L LP E + P
Sbjct: 412 NWAYIAGVGNDSR-DRYFDIVAQARRYDADAEFVTHWLPELADLPPEYAHEP 462
>gi|428182576|gb|EKX51436.1| induced by DNA damage [Guillardia theta CCMP2712]
Length = 493
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/474 (44%), Positives = 299/474 (63%), Gaps = 37/474 (7%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAW------DSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
G ++WFRNDLR+ DN + +A +S+ VLPVYC DPR + +G KTG L
Sbjct: 4 GRVVLWFRNDLRLTDNVLIAEASKRFLASNSALSVLPVYCFDPRFFAQS-QYGPRKTGVL 62
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RA+FL+E +ADL+K L G +LL+ GKPE IIP L +S V AQ+E EEL V+
Sbjct: 63 RAKFLLESVADLKKRLQGVGSDLLVLSGKPEVIIPRLMQSGEDTTVLAQEEVTDEELRVD 122
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH--SSLPDVYTHFRKSI 252
R V++ + + +L L+WG T++H DD+P+ + +PDV+T F+++
Sbjct: 123 RAVKRAIAPL------------GGKLHLLWGHTLFHRDDLPYRQGLTDMPDVFTPFKEAC 170
Query: 253 EAKCTVRGCIRIP--SSFGPPPS---VVDWGSVPLIEQLELHSPKVSKG--------MRF 299
E K VR C P + G P +D G +P +E L + +V ++F
Sbjct: 171 ERKSKVRKCFPYPVKGNLGVVPEDAKKLDEG-LPSLESLGFSAQEVEGAAKPDPRSVLQF 229
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
VGGESA L R+ Y WK+D LK Y ETRN M+G DYS+KFS WLA G ISPR+IYEEV+
Sbjct: 230 VGGESAGLDRIQHYIWKQDCLKDYFETRNGMIGADYSSKFSAWLAHGCISPRFIYEEVQR 289
Query: 360 YERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRD 419
YE +RV N STYW++FEL+WRD+FR+I +K+GN +F +GG +KW + + F+ W D
Sbjct: 290 YESQRVKNKSTYWLIFELIWRDFFRYICMKHGNEVFKIGGIAHRSWKWEGEGEAFQRWVD 349
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TG PL+DANM+EL TGFMSNRGRQ SFL +++ +DWR+GA +FE LLD+D +N
Sbjct: 350 GETGQPLVDANMRELKYTGFMSNRGRQNVASFLTQNLNVDWRLGAAYFEETLLDHDVTAN 409
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+GNW + AG+ R ++ F+I KQ+++YD +GEY W P+L+ +P + + P
Sbjct: 410 WGNWMFAAGLSGG-RINK-FNILKQSKDYDEDGEYCRLWCPELRNVPVVKVHSP 461
>gi|381186840|ref|ZP_09894408.1| cryptochrome [Flavobacterium frigoris PS1]
gi|379651146|gb|EIA09713.1| cryptochrome [Flavobacterium frigoris PS1]
Length = 429
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/442 (45%), Positives = 278/442 (62%), Gaps = 20/442 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
AIVWF+ DLR+ DNE L+KA SE +LP+YC D H +TT +GF KTG+ RAQFL+E
Sbjct: 3 TAIVWFKTDLRLYDNETLIKAIAQSEEILPIYCFDDSHFETT-QYGFKKTGSYRAQFLLE 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L +L NL G LLI GKPE IP + + H V+A++E EE E+LV+ L
Sbjct: 62 SLKNLDANLRKLGSGLLIVKGKPEVEIPKIVAEYKVHKVFAEREVAFEEKRTEKLVQTEL 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ +L+ +T+YH +D+PF +PD++T FRK IE + +VR
Sbjct: 122 FKL------------RCELETFSTSTLYHAEDLPFAKKDIPDIFTVFRKKIEQETSVRSV 169
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK--GMRFVGGESAALGRVNEYFWKKDL 319
P + P ++ ++P +++L L K+ + F GGE+ A R+N YF++
Sbjct: 170 FSSPLTIASP--IIPKLNLPTLKKLGLELSKIDSRAAINFKGGETQAKKRLNHYFFETKS 227
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L YKETRN M+G DYS+KFS WLA G ISPR IY E+K YE + ANDSTYW++FEL+W
Sbjct: 228 LSSYKETRNGMVGEDYSSKFSAWLALGCISPRAIYFEIKRYENQNGANDSTYWLVFELLW 287
Query: 380 RDYFRFISLKYGNSLFHLGGPR--KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
RD+FRF+ K+ F G + K+ K S ++KL W +G T I+ANM EL +T
Sbjct: 288 RDFFRFMFKKHQTKFFLYSGIQNEKVNSK-SLNEKLVSQWINGATDSDFINANMIELKLT 346
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ S+ ++ +DWRMGA +FE+ L+DYD CSN+GNW Y AGVGNDPR+ R
Sbjct: 347 GFMSNRGRQNVASYFCNELNMDWRMGASYFESQLIDYDVCSNWGNWAYLAGVGNDPRKHR 406
Query: 498 YFSIPKQAQNYDREGEYVAYWL 519
YF+I KQA++YD++ + WL
Sbjct: 407 YFNIEKQAKDYDKDSAFRDLWL 428
>gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi]
gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 226/555 (40%), Positives = 318/555 (57%), Gaps = 90/555 (16%)
Query: 83 AIVWFRNDLRVLDNEALLKAW---------DSSEMVLPVYCVDPRHSQTTYHFGFPKTGA 133
A++WFRNDLR+ DNE+L+K S VLP+YC DPRH + F K A
Sbjct: 11 ALLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFSRIGKFRKANA 70
Query: 134 LRAQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELN 192
R +FL E + +LRKNLMN GL L+I+ G PEEIIP L + V+A KE SEE +
Sbjct: 71 NRTRFLTESVDNLRKNLMNEWGLKLMIQIGHPEEIIPHLCSQYEIEQVFADKEVTSEETS 130
Query: 193 VERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI 252
+E+++ K + + +G +M H++D+PF +LP V+T FR+ +
Sbjct: 131 IEQVLEKQIN-----------------VNYSYGFSMVHVEDLPFKIENLPHVFTDFRRKV 173
Query: 253 E-AKCTVRGCIRIP------------------SSFGPPPS--VVDWGSVPLIEQLE-LHS 290
E K VR +++ ++ G P V+ + + E +E L
Sbjct: 174 ENPKLIVRPLLQLSPNEKKLISSRVVNLIQDENALGKTPDLKVLGYTDEEISEMMENLKD 233
Query: 291 PKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISP 350
P+ + F GGE AL R+N+Y W +D LK YKETRN ++G YS+K SPWL+ G ISP
Sbjct: 234 PRSV--LHFKGGEDEALARLNDYLWTQDRLKTYKETRNGLVGEAYSSKLSPWLSLGCISP 291
Query: 351 RYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL------- 403
R IY EVK YE+ERV NDSTYW++FEL+WRDYFRF + K+GN +F L G +
Sbjct: 292 RKIYHEVKRYEKERVENDSTYWLIFELLWRDYFRFFAEKFGNHIFMLKGVTRASSKRKGL 351
Query: 404 --------------EYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIAC 449
E +W QD KLF+ W DG TG P +DANM+EL ++G+MSNRGRQ
Sbjct: 352 IGDSSSNKVESKYDETRWKQDLKLFKLWADGKTGLPFVDANMRELKISGWMSNRGRQNVA 411
Query: 450 SFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN-DPR-EDRYFSIPKQAQN 507
SFL +D+ +DWR+GAE+FE+ LLD+ SN+GNW Y AGVG+ DPR E RYF++ KQ +
Sbjct: 412 SFLSKDLNLDWRLGAEYFESLLLDHSVTSNWGNWLYAAGVGDVDPRGEARYFNVVKQGFD 471
Query: 508 YDREGEYVAYWLPQLKALPKERRNFP---------------GGSYIEQIVSLK-HGNINQ 551
YD GE+V W+P+L +P+ + P G Y + +V++K H ++N+
Sbjct: 472 YDFNGEFVKLWIPELDQVPQRCIHAPYLMSESEQTNAKCTIGVDYPKSLVNVKAHHHLNE 531
Query: 552 NRNQNDSLTRTGRRN 566
N + + +TG+ N
Sbjct: 532 NGVKANYKHKTGKAN 546
>gi|390954368|ref|YP_006418126.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Aequorivita sublithincola DSM 14238]
gi|390420354|gb|AFL81111.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Aequorivita sublithincola DSM 14238]
Length = 434
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/449 (45%), Positives = 282/449 (62%), Gaps = 23/449 (5%)
Query: 76 KRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALR 135
++ + + +VWF DLRV DN +L KA +E V+ VY DPRH TT +GF KT R
Sbjct: 3 EKQKQSIGLVWFTKDLRVGDNHSLSKALTENEKVIGVYFFDPRHFDTTV-YGFKKTEKFR 61
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER 195
A+FLIE + +LRKNL ++LL+ H KPE I P L + + ++Y Q+E SEE+
Sbjct: 62 AKFLIETVENLRKNLQKLNISLLVFHEKPEVIFPQLVEKYQIKSIYFQREWTSEEV---- 117
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLI--WGTTMYHLDDIPF-DHSSLPDVYTHFRKSI 252
V KN+QQ P KLI + ++H DIP+ D S +P+V+T+FRK +
Sbjct: 118 AVSKNIQQ------------KSPDCKLIKTYDQFLFHSGDIPYSDFSEIPEVFTNFRKKV 165
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK--GMRFVGGESAALGRV 310
EA VR C P V + +P + L L + F GGE A R+
Sbjct: 166 EANTKVRKCDGKPEIQSQINLVENNTEIPTLSDLGLEDFETDSRSAFPFKGGEDAGEERL 225
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
EYFW+ L YKETRN +LG DYS+KFS WLA+GS+SPR+IYEEVK +E E N+ST
Sbjct: 226 KEYFWETKSLAKYKETRNGLLGEDYSSKFSAWLANGSLSPRFIYEEVKRFESEITENEST 285
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW++FEL+WRDYF+++SLK+G+ +FHL G + + W+++ K+F+ W +G P I+AN
Sbjct: 286 YWLIFELLWRDYFKYVSLKHGSKIFHLNGISQKDLDWNKNSKIFKKWIEGSLEEPFINAN 345
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
MKE++ TGFMSNRGRQ SF +++ DWR+GA +FE+ L+DYD SN+GNW Y +GVG
Sbjct: 346 MKEITATGFMSNRGRQNVNSFWAKELLQDWRVGAAYFESMLIDYDVHSNWGNWMYNSGVG 405
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWL 519
NDPR DR F+I QA+ YD +G+Y WL
Sbjct: 406 NDPR-DRKFNIKMQAERYDADGKYQKTWL 433
>gi|448583117|ref|ZP_21646586.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
gi|445730074|gb|ELZ81666.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
Length = 504
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 221/487 (45%), Positives = 279/487 (57%), Gaps = 47/487 (9%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT-----TYHFGFPKTGAL 134
+ ++ WFR DLR+ DNEAL A D+ + VLPVYC+DPR F F KTGA
Sbjct: 3 ESTSLAWFRRDLRLHDNEALAAACDA-DGVLPVYCLDPREYGDRPFGGPDSFDFDKTGAH 61
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RA+F +E L+DLR +L RG +L++R G PE ++P LA + A V EE +VE
Sbjct: 62 RARFRLESLSDLRSSLRERGSDLVVREGTPESVLPELAATVDADFVTVHTRPTPEESSVE 121
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
V + L + L+ WG T+ HLDD+P S +PD YT FRK++E+
Sbjct: 122 SAVEREL------------GGDGVDLRRFWGHTLTHLDDLPMALSEVPDTYTTFRKAVES 169
Query: 255 -----------KCTVRGCIRIPSSFGP------PPSVVDW---GSVP----LIEQLELHS 290
+ P+ P PP VD G +P L+ + S
Sbjct: 170 AVEGDEGGDAGRSGESAGDGDPAGRDPLSEPDVPPLPVDAPVAGDLPSLSTLVGTADAES 229
Query: 291 PKVSKG---MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGS 347
+ S + F GGE+AAL RV Y W D L+ YKETRN MLG DYS+KFSPWL G
Sbjct: 230 ARASDDRGVLSFDGGETAALDRVESYIWTGDHLREYKETRNGMLGADYSSKFSPWLNEGC 289
Query: 348 ISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRK-LEYK 406
+SPR + EV YE RV NDSTYW++FEL WRD+F+F K+G+ F GG RK +
Sbjct: 290 LSPRSVKAEVDRYEDRRVENDSTYWLVFELRWRDFFQFQFAKHGSDFFRRGGIRKRTDVD 349
Query: 407 WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEW 466
W D+ FE W G TG P +DANM+EL+ TG+MSNRGRQ A SFL D+ +DWR GA +
Sbjct: 350 WRADETQFERWTAGETGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAY 409
Query: 467 FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
FET L+DYDP SNYGNW Y AGVGND R DR F + QA YD EYV WLP+L ALP
Sbjct: 410 FETRLVDYDPASNYGNWAYIAGVGNDSR-DRSFDVRWQANRYDENAEYVKTWLPELDALP 468
Query: 527 KERRNFP 533
E + P
Sbjct: 469 AEYAHEP 475
>gi|448578492|ref|ZP_21643927.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
gi|445727033|gb|ELZ78649.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
Length = 508
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/484 (43%), Positives = 284/484 (58%), Gaps = 46/484 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPR-HSQTTY----HFGFPKTGALRA 136
A+VWFR DLR+ DNEAL+ A ++ V+PVYC DPR + Q +Y F KTG R
Sbjct: 5 TALVWFRRDLRLHDNEALVDAC-GADRVVPVYCFDPRDYCQQSYGGPDSFDVRKTGLHRL 63
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+F +E +ADLR +L +RG +L++R G+PE ++P +A + GA +V EE VE
Sbjct: 64 RFRLESVADLRSSLRDRGSDLVVRIGRPEAVLPDVATAVGADSVSMHTWPTPEERQVESA 123
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V++ L V + + + WG T+ H DD+P D +LPD YT FRK++E
Sbjct: 124 VQQALDDVGV------------EPRRFWGHTLTHPDDLPMDLGALPDTYTTFRKAVENDA 171
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLE-------------LHSPKVSKGMR----- 298
++R + P P SV + G +P + L+ L SP +
Sbjct: 172 SIREPLHTPELPALPDSVPEPGEIPALSDLDEDVSNAVQAEDEPLASPNNEQATPSEQAT 231
Query: 299 --------FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISP 350
F GGE+A RV Y W+ D L+ YKETRN ++G DYS+KFSPWL G +SP
Sbjct: 232 PSEQAIPLFEGGETAGRERVESYIWEGDHLREYKETRNGLVGRDYSSKFSPWLNEGCLSP 291
Query: 351 RYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQ 409
RY+ EV+ YE RV+NDSTYW+ FEL WRD+F+F + K+G F G R + + W
Sbjct: 292 RYVQSEVERYEDVRVSNDSTYWLTFELRWRDFFQFQTAKHGGEFFQRSGIRNRTDIDWRD 351
Query: 410 DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
D F+ W G TG P +DA M+EL+ TG++SNR RQ A SFL ++ +DWR GA +FET
Sbjct: 352 DDAQFDRWAAGETGIPFVDAAMRELNATGYVSNRARQNAASFLANNLRLDWRRGAAYFET 411
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKER 529
L+DYDP SNYGNW Y AGVGND R DRYF I QA+ YD + E+V +WLP+L LP E
Sbjct: 412 QLVDYDPASNYGNWAYIAGVGNDSR-DRYFDIVAQARRYDADAEFVTHWLPELADLPPEY 470
Query: 530 RNFP 533
+ P
Sbjct: 471 AHEP 474
>gi|145341190|ref|XP_001415696.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575919|gb|ABO93988.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 551
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/475 (44%), Positives = 293/475 (61%), Gaps = 45/475 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW------DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQ 137
IVWFRNDLR+LDN + +A D++E V+PVY D +T+ G + GA R +
Sbjct: 11 IVWFRNDLRLLDNAVVARAAALRGQSDAAE-VVPVYVFDETFFKTSKR-GLARFGAGRGK 68
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH---AVYAQKETCSEELNVE 194
F IEC+ DL++ L G +LL+R GK E++I L + GA+ V Q E SEE +++
Sbjct: 69 FTIECVDDLKRALRGVGSDLLVRCGKTEDVITELTLT-GANDKTIVLTQTEVTSEETDMD 127
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSS----LPDVYTHFRK 250
R V + ++ S ++ ++ +WG+T+YH DD+P+D + LPDV+T FR
Sbjct: 128 RAVERASKERARSGGAS------ASMERLWGSTLYHADDLPYDFAGGLHDLPDVFTPFRN 181
Query: 251 SIEAKCTVRGCIRIPSS--FGPPPSVV---DWGSVPLIEQLELHSPKVSKG--------- 296
+E+KC+VR + P++ G P+ V DW +P + L S +++
Sbjct: 182 KVESKCSVRAVVPAPTANALGSVPASVAGLDW--MPEPKDLPFASAEIAPACEKWLKDGA 239
Query: 297 -----MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPR 351
+ F GGES AL RV Y W DLL Y ETRN MLG DYSTK +PWLA G +SPR
Sbjct: 240 DERSVLEFKGGESQALARVKYYLWDSDLLATYFETRNGMLGGDYSTKLAPWLALGCVSPR 299
Query: 352 YIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQ 411
Y+ E++ YE RV N STYWV+FEL+WRD+F+F +LK+GN +FHL G W D+
Sbjct: 300 YVVSEIRRYESARVENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTANRTASWKSDE 359
Query: 412 KLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCL 471
K+ ++W+ G TGYPLIDANM+EL+ TGFMSNRGRQ S+L D G+DWR GA+WFE L
Sbjct: 360 KILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGVDWRHGADWFEHHL 419
Query: 472 LDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
LDYD SN+GNW AG+ R +R F+I KQ ++YD G+YV W+P+L+ +P
Sbjct: 420 LDYDTASNWGNWCAAAGMTGG-RINR-FNIAKQTKDYDPSGDYVKRWIPELREIP 472
>gi|448546392|ref|ZP_21626556.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548379|ref|ZP_21627646.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557573|ref|ZP_21632762.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702845|gb|ELZ54785.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445714130|gb|ELZ65897.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714474|gb|ELZ66236.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 503
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 217/487 (44%), Positives = 277/487 (56%), Gaps = 47/487 (9%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT-----TYHFGFPKTGAL 134
+ ++ WFR DLR+ DN A A ++ V+PVYCVDPR F F KTGA
Sbjct: 3 ESTSLAWFRRDLRLHDNAAFAAA-CGADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAH 61
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RA+F +E LADLR +L +RG +L++R G+PE ++P LA + A V EE VE
Sbjct: 62 RARFRLESLADLRASLRDRGSDLVVREGRPESVLPELAAATDADFVTVHTRPTPEESRVE 121
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
V L+ + +L+ +WG T+ HLDD+P S LPD YT FRK++E+
Sbjct: 122 SAVETELR------------GDGVELRRVWGHTLTHLDDLPMVLSDLPDTYTTFRKAVES 169
Query: 255 KCTVRGCI----------------RIPSSFGPPPSVVD----WGSVPLIEQL-------E 287
G R P S P + D G P + L
Sbjct: 170 AAEDAGTGDAAVGDEHASDGDPGGRDPRSDVTVPPLPDDAPVAGEFPALSDLVGTADANA 229
Query: 288 LHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGS 347
+P + F GGE+AAL RV Y W D L+ YKETRN +LG DYS+KFSPWL G
Sbjct: 230 DRAPDDRGVLPFDGGETAALDRVESYVWAGDHLREYKETRNGLLGADYSSKFSPWLNEGC 289
Query: 348 ISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYK 406
+SPRY+ EV YE RV NDSTYW++FEL WRD+F+F K+G+ F GG R + +
Sbjct: 290 LSPRYVKAEVDRYEARRVENDSTYWLVFELRWRDFFQFQFAKHGSDFFRRGGIRDRTDID 349
Query: 407 WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEW 466
W +D FE W G +G P +DANM+EL+ TG+MSNRGRQ A SFL D+ +DWR GA +
Sbjct: 350 WRRDDAQFERWAAGKSGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAY 409
Query: 467 FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
FET L+DYDP SNYGNW Y AGVGND R DR F + QA YD + EYV WLP+L ALP
Sbjct: 410 FETQLVDYDPASNYGNWAYIAGVGNDSR-DRSFDVRWQATRYDEDAEYVKTWLPELDALP 468
Query: 527 KERRNFP 533
E + P
Sbjct: 469 AEYAHEP 475
>gi|308799831|ref|XP_003074697.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
gi|116000867|emb|CAL50547.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
Length = 787
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 289/477 (60%), Gaps = 39/477 (8%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAW----DSSEM-VLPVYCVDPRHSQTTYHFGFPKTGA 133
G+ ++WFRNDLR+LDN + +A +SS++ V+PVY D + + + G + GA
Sbjct: 243 GRTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKR-GLARFGA 301
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH---AVYAQKETCSEE 190
R +F +EC+ DL+ +L G +LL+R GK ++I L + GA+ + Q E SEE
Sbjct: 302 GRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLT-GANDRTIILTQTEVTSEE 360
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSS----LPDVYT 246
++ V + ++ ++ H WG+T+YH+DD+PFD +S LPDV+T
Sbjct: 361 TEMDVAVERATRERARGGAASATMERH------WGSTLYHIDDVPFDVTSGLSDLPDVFT 414
Query: 247 HFRKSIEAKCTVRGCIRIPSS--FG-PPPSVVDWGSVPLIEQLELHSPKVSKG------- 296
FR +E+KC VR I P++ G P SV + +P L S +++
Sbjct: 415 PFRNKVESKCKVRDVIPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKD 474
Query: 297 -------MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSIS 349
+ F GGES AL RV Y W+ D L Y ETRN MLG DYSTK +PWLA G +S
Sbjct: 475 CLDERSVLDFKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVS 534
Query: 350 PRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ 409
PR++ E++ YE ERV N STYWV+FEL+WRD+F+F +LK+GN +FHL G W +
Sbjct: 535 PRHVVSEIRRYESERVENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRASWKR 594
Query: 410 DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
D+K+ ++W+ G TGYPLIDANM+EL+ TGFMSNRGRQ S+L D GIDWR GA+WFE
Sbjct: 595 DEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEH 654
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
LLDYD SN+GNW AG+ R +R F+I KQ ++YD GEY+ W+ +L +P
Sbjct: 655 HLLDYDTASNWGNWCAAAGM-TGGRINR-FNIAKQTKDYDPAGEYIKTWVKELAEVP 709
>gi|120437052|ref|YP_862738.1| cryptochrome-like DNA photolyase [Gramella forsetii KT0803]
gi|117579202|emb|CAL67671.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii
KT0803]
Length = 438
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/450 (43%), Positives = 276/450 (61%), Gaps = 20/450 (4%)
Query: 73 KALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTG 132
K K+ +VWFRNDLR+ D+EAL A +S E ++ +YC DPRH FGF KTG
Sbjct: 4 KMPKKQTTNTGLVWFRNDLRISDHEALTTACNSHEKIIGIYCFDPRHYLKD-QFGFIKTG 62
Query: 133 ALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELN 192
R++FLIE + +L+KNL + LL+ KPE+IIP + + +VY QKE EE +
Sbjct: 63 KFRSKFLIETIEELQKNLETLNIELLVFQEKPEDIIPEIISEYSVKSVYFQKEWTQEEHD 122
Query: 193 VERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFD-HSSLPDVYTHFRKS 251
VE+ VR+ + + +S + ++H +DIPF + +P VYT FRKS
Sbjct: 123 VEKEVRRLVNDIEFNS--------------YYQQFLFHPEDIPFSSFNDIPKVYTEFRKS 168
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQL--ELHSPKVSKGMRFVGGESAALGR 309
E VR + +PS P ++ + +P + L + + F GGE A R
Sbjct: 169 CEKYSKVRELVNLPSPL-PARNLPEKAKIPSFKDLGHDDYEKDKRSAFPFKGGEDQAKKR 227
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ EYFW+ L YKETRNEM+G +YS+K S WLA+GSIS R +Y EVK +E+E +N S
Sbjct: 228 IQEYFWESKNLTRYKETRNEMIGANYSSKLSAWLANGSISARQVYHEVKKFEKEITSNLS 287
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
TYW++FEL+WRD+F++ISLK+ N +F LGG + +W+ D++ + W G T Y ++A
Sbjct: 288 TYWLIFELIWRDFFKYISLKHANKIFKLGGIQNRSLEWNYDKQSLKDWIHGNTKYDFVNA 347
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
NM+E+S TGFMSNRGRQ SF +++ DWR+GA +FE+ L+DYD SN+GNW Y +GV
Sbjct: 348 NMREISNTGFMSNRGRQNVNSFWAKELKQDWRIGAAYFESLLIDYDVHSNWGNWMYNSGV 407
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWL 519
GNDPR DR F+I QA+ YD EY WL
Sbjct: 408 GNDPR-DRKFNIKNQAERYDPNNEYQDLWL 436
>gi|424841446|ref|ZP_18266071.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
gi|395319644|gb|EJF52565.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
Length = 460
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/456 (44%), Positives = 278/456 (60%), Gaps = 18/456 (3%)
Query: 74 ALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGA 133
AL + K V I WFR DLR+ DNE L +A +SE V PVY D R GF KTG
Sbjct: 3 ALPKKAKRV-IAWFRLDLRLHDNEMLTEAIKASEEVYPVYVFDERTFGGKTESGFAKTGP 61
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELN 192
R QF+IE +ADL++ L G++L+IR GK EE + LA+ V+ +E T EEL
Sbjct: 62 RRCQFIIEAVADLKQQLQTLGIDLIIRRGKAEEELFELAQELKTGWVFCNRERTYEEELQ 121
Query: 193 VERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI 252
RL K L S + ++ G +Y+ D+PF + PD++T FRK +
Sbjct: 122 QNRLEEK------LWSIGQE-------IRFFRGKMLYYTQDLPFPIAHTPDIFTQFRKEV 168
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS--KGMRFVGGESAALGRV 310
E +R + P +F P + G +P + P ++F GGE+ L R+
Sbjct: 169 EKLTPIRAPLPKPQAFPPWSHRLPLGDLPQLSDFGWEMPPQDPRTVLQFKGGETEGLKRL 228
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
Y W+ D + YKETRN +LG DYS+KFSPWLA G +SP+ IY E+K YE+ER N ST
Sbjct: 229 QYYLWESDCIASYKETRNGLLGADYSSKFSPWLAQGCLSPKQIYAEIKRYEKERTKNKST 288
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDA 429
YW+ FEL+WRD+FR + KYG+ +F G R K + K S + + FESW G TG P IDA
Sbjct: 289 YWLYFELLWRDFFRLMGKKYGSQIFLPTGLRGKKKKKLSNNMQAFESWLLGKTGQPFIDA 348
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
NM+EL+ TGFMSNRGRQ S+L+ D+ ++W++GAE+FE+ L+DYD SN+ NW Y AG+
Sbjct: 349 NMRELAQTGFMSNRGRQNVASYLINDLKVNWQLGAEYFESTLIDYDVTSNWVNWLYIAGL 408
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
GNDPREDRYF+ Q++ YD +GEY+ +WLPQL+ L
Sbjct: 409 GNDPREDRYFNPINQSKRYDPDGEYIKFWLPQLQTL 444
>gi|448704049|ref|ZP_21700589.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
gi|445796665|gb|EMA47166.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
Length = 475
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/454 (43%), Positives = 271/454 (59%), Gaps = 19/454 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+VWFR+DLR+ DN L +A +++E ++PVY DPR T + PK G RA+F E
Sbjct: 3 TAVVWFRDDLRLTDNPTLSRALEAAERIVPVYVFDPRRRGET-QYDTPKLGPHRARFRRE 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ DLR L R +LL+ G E++IP L + A AVYAQ + +EE + ER VR+ L
Sbjct: 62 SVLDLRTRLRERDGDLLVETGHVEDVIPELVDRYDAAAVYAQTKPATEERSRERAVRRAL 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
V L+ W T++H +D+P + D +T +R +EA+ T R
Sbjct: 122 PGDV-------------DLRSQWTHTLFHPEDLPTAVDRIDDTFTPWRHEVEAEATPRKP 168
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDL 319
P S P VD +VP + L P + F GGESA R+ Y W++D
Sbjct: 169 APAPESV--PTPAVDASTVPTLSALGFDDPPADHRAVLPFEGGESAGKRRLEAYVWERDC 226
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L+ YK+TRN +LG DYS+K S WLA+G +SPR+++ EV+ YERERVAN+ TYW++FEL+W
Sbjct: 227 LRTYKQTRNGLLGADYSSKLSAWLAAGCLSPRWVHREVQRYERERVANEDTYWLVFELLW 286
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RD+F+F K+G+ F G R +E W +D+ F W G TG P +DANM+EL TG+
Sbjct: 287 RDFFQFQFAKHGDDFFTETGIRDIEKHWQRDRAAFRRWTKGVTGVPFVDANMRELERTGY 346
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
+SNRGRQ SFL + IDWR GA +FE L+DYD SN+GNW Y AGVGND R D YF
Sbjct: 347 VSNRGRQNVASFLTDALEIDWRWGAAYFEAQLVDYDVASNWGNWAYQAGVGNDSR-DGYF 405
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+ QA YD + +YV WLP+L+ LP E + P
Sbjct: 406 DVLWQAGRYDPDADYVTTWLPELEGLPPEYAHRP 439
>gi|75320690|sp|Q5IFN2.1|CRYD_OSTTA RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
Flags: Precursor
gi|51948350|gb|AAU14279.1| CRY DASH-like protein [Ostreococcus tauri]
Length = 546
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 289/477 (60%), Gaps = 39/477 (8%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAW----DSSEM-VLPVYCVDPRHSQTTYHFGFPKTGA 133
G+ ++WFRNDLR+LDN + +A +SS++ V+PVY D + + + G + GA
Sbjct: 2 GRTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKR-GLARFGA 60
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH---AVYAQKETCSEE 190
R +F +EC+ DL+ +L G +LL+R GK ++I L + GA+ + Q E SEE
Sbjct: 61 GRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLT-GANDRTIILTQTEVTSEE 119
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSS----LPDVYT 246
++ V + ++ ++ H WG+T+YH+DD+PFD +S LPDV+T
Sbjct: 120 TEMDVAVERATRERARGGAASATMERH------WGSTLYHIDDVPFDVTSGLSDLPDVFT 173
Query: 247 HFRKSIEAKCTVRGCIRIPSS--FG-PPPSVVDWGSVPLIEQLELHSPKVSKG------- 296
FR +E+KC VR I P++ G P SV + +P L S +++
Sbjct: 174 PFRNKVESKCKVRDVIPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKD 233
Query: 297 -------MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSIS 349
+ F GGES AL RV Y W+ D L Y ETRN MLG DYSTK +PWLA G +S
Sbjct: 234 CLDERSVLDFKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVS 293
Query: 350 PRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ 409
PR++ E++ YE ERV N STYWV+FEL+WRD+F+F +LK+GN +FHL G W +
Sbjct: 294 PRHVVSEIRRYESERVENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRASWKR 353
Query: 410 DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
D+K+ ++W+ G TGYPLIDANM+EL+ TGFMSNRGRQ S+L D GIDWR GA+WFE
Sbjct: 354 DEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEH 413
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
LLDYD SN+GNW AG+ R +R F+I KQ ++YD GEY+ W+ +L +P
Sbjct: 414 HLLDYDTASNWGNWCAAAGM-TGGRINR-FNIAKQTKDYDPAGEYIKTWVKELAEVP 468
>gi|379729344|ref|YP_005321540.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
gi|378574955|gb|AFC23956.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
Length = 466
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/456 (45%), Positives = 278/456 (60%), Gaps = 18/456 (3%)
Query: 74 ALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGA 133
AL + K V I WFR DLR+ DNE L +A + E V PVY D R GF KTG
Sbjct: 5 ALPKKAKRV-IAWFRLDLRLHDNEMLTEAIKAGEEVYPVYVFDERTFGGKTESGFAKTGP 63
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELN 192
R QF+IE +ADL++ L G++LLIR GK EE + LA+ V+ +E T EEL
Sbjct: 64 RRCQFIIEAVADLKQQLQALGIDLLIRRGKAEEEVFKLAQELKTGWVFCNREKTYEEELQ 123
Query: 193 VERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI 252
RL K L S +++ G +Y+ D+PF + PD++T FRK +
Sbjct: 124 QNRLEEK------LWSIGQ-------EIRFFRGKMLYYTQDLPFPIAHTPDIFTQFRKEV 170
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRV 310
E VR + P +F P + G +P + P ++F GGE+ L R+
Sbjct: 171 EKLTPVRAPLPKPKAFNPWSHRLPLGDLPQLSDFGWEMPPQDDRTVLQFKGGETEGLKRL 230
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
+ Y W+ D + YKETRN +LG DYS+KFSPWLA G +SP+ IY+E+K YE+ER N ST
Sbjct: 231 HYYLWESDCIASYKETRNGLLGADYSSKFSPWLAQGCLSPKQIYDEIKRYEKERTKNKST 290
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDA 429
YW+ FEL+WRD+FR + KYG+ +F G R K + K S + + FESW G TG P IDA
Sbjct: 291 YWLYFELLWRDFFRLMGKKYGSQIFLPTGLRGKKKKKLSNNMQAFESWLLGKTGQPFIDA 350
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
NM+EL+ TGFMSNRGRQ S+L+ D+ ++W++GAE+FE+ L+DYD SN+ NW Y AG+
Sbjct: 351 NMRELAQTGFMSNRGRQNVASYLINDLKVNWQLGAEYFESVLIDYDVTSNWVNWLYIAGL 410
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
GNDPREDRYF+ Q++ YD +GEY+ WLP+L AL
Sbjct: 411 GNDPREDRYFNPISQSKRYDPDGEYIRLWLPELAAL 446
>gi|448602354|ref|ZP_21656410.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445747869|gb|ELZ99323.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 507
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 217/481 (45%), Positives = 279/481 (58%), Gaps = 42/481 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT-----TYHFGFPKTGAL 134
+ ++ WFR DLR L + A L A ++ V+PVYCVDPR F F KTGA
Sbjct: 3 ESTSLAWFRRDLR-LHDNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFVFEKTGAH 61
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RA+F +E L+DLR +L +RG +LL+R G PE ++P +A + A V EE +VE
Sbjct: 62 RARFRLEALSDLRASLRDRGSDLLVREGTPESVLPEVATTVDADVVTVHTRPTPEESSVE 121
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
V S+ + + +L+ WG T+ H+DD+P S+LPD YT FRK++E+
Sbjct: 122 --------SAVESAVETELRDDGVELRRFWGHTLTHVDDLPMALSALPDTYTTFRKAVES 173
Query: 255 KC--------TVRGCIR--IPSSFGP---------PPSVVDWGSVPLIEQLELHS----- 290
T G R P+ P P D G +P + L +S
Sbjct: 174 AAEDADADAETGPGSARGGDPAGGDPLSEPTVPPLPRDAPDAGDLPAVSDLAGNSDAEFD 233
Query: 291 --PKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSI 348
P + F GGE+AAL RV Y W D L+ YKETRN +LG DYS+KFSPWL G +
Sbjct: 234 PAPDDRGVLPFDGGETAALDRVESYVWAGDHLREYKETRNGLLGADYSSKFSPWLNEGCL 293
Query: 349 SPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKW 407
SPRY+ EV YE RVANDSTYW++FEL WRD+F+F K+G+ F G R + + W
Sbjct: 294 SPRYVKAEVDRYEDRRVANDSTYWLVFELRWRDFFQFQFAKHGSDFFRREGIRERTDIDW 353
Query: 408 SQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWF 467
+D FE W G TG P +DANM+EL+ TG+MSNRGRQ A SFL D+ +DWR GA +F
Sbjct: 354 RRDDARFERWAAGETGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAYF 413
Query: 468 ETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
ET L+DYDP SNYGNW Y AGVGND R DR F + QA+ YD EYV WLP+L ALP
Sbjct: 414 ETRLVDYDPASNYGNWAYIAGVGNDSR-DRSFDVRWQAKRYDENAEYVTTWLPELDALPA 472
Query: 528 E 528
E
Sbjct: 473 E 473
>gi|448568178|ref|ZP_21637755.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
gi|445727128|gb|ELZ78742.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
Length = 503
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 214/487 (43%), Positives = 274/487 (56%), Gaps = 47/487 (9%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT-----TYHFGFPKTGAL 134
+ ++ WFR DLR L + A L A ++ V+PVYCVDPR F F KTGA
Sbjct: 3 ESTSLAWFRRDLR-LHDNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAH 61
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RA+F +E LADLR +L +RG +L++R +PE ++P +A + A V EE VE
Sbjct: 62 RARFRLESLADLRASLRDRGSDLVVRESRPESVLPEVAAAVDADFVTVHTRPTPEESRVE 121
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
V L+ + +L+ WG T+ HLDD+P S LPD YT FRK++E+
Sbjct: 122 SAVETELRDGGV------------ELRRFWGHTLTHLDDLPMALSDLPDTYTTFRKAVES 169
Query: 255 KCTVRGCIR------------------IPSSFGPP--PSVVDWGSVPLIEQL-------E 287
G +P PP D G +P + L
Sbjct: 170 AAEDAGTGDAAAGDEHASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANA 229
Query: 288 LHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGS 347
+P + F GGE+AAL RV Y W D L+ YKETRN +LG DYS+KFSPWL G
Sbjct: 230 DRAPDDRGVLPFDGGETAALDRVESYIWAGDHLREYKETRNGLLGADYSSKFSPWLNEGC 289
Query: 348 ISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYK 406
+SPRY+ EV YE RV NDSTYW++FEL WRD+F+F K+G+ F G R + +
Sbjct: 290 LSPRYVKAEVDRYEARRVENDSTYWLVFELRWRDFFQFQFAKHGSDCFRREGIRERTDID 349
Query: 407 WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEW 466
W +D FE W G TG P +DANM+EL+ TG+MSNRGRQ A SFL D+ +DWR GA +
Sbjct: 350 WRRDDAKFERWAAGKTGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAY 409
Query: 467 FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
FET L+DYDP SNYGNW Y AGVGND R DR F + QA YD + EYV WLP+L ALP
Sbjct: 410 FETRLVDYDPASNYGNWAYIAGVGNDSR-DRSFDVRWQATRYDEDAEYVKTWLPELDALP 468
Query: 527 KERRNFP 533
E + P
Sbjct: 469 AEYAHEP 475
>gi|448600883|ref|ZP_21656262.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
gi|445734896|gb|ELZ86452.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
Length = 503
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 213/487 (43%), Positives = 273/487 (56%), Gaps = 47/487 (9%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT-----TYHFGFPKTGAL 134
+ ++ WFR DLR L + A L A ++ V+PVYCVDPR F F KTGA
Sbjct: 3 ESTSLAWFRRDLR-LHDNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAH 61
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RA+F +E LADLR +L +RG +L++R +PE ++P +A + A V EE VE
Sbjct: 62 RARFRLESLADLRASLRDRGSDLVVRESRPESVLPEVAAAVDADFVTVHTRPTPEESRVE 121
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
V L+ + +L+ WG T+ HLDD+P S LPD YT FRK++E+
Sbjct: 122 SAVETELRDGGV------------ELRRFWGHTLTHLDDLPMALSDLPDTYTTFRKAVES 169
Query: 255 KCTVRGCIR------------------IPSSFGPP--PSVVDWGSVPLIEQL-------E 287
G +P PP D G +P + L
Sbjct: 170 AAEDAGTGDAAAGDEHASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANA 229
Query: 288 LHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGS 347
+P + F GGE+AAL RV Y W D L+ YKETRN +LG DYS+KFSPWL G
Sbjct: 230 DRAPDDRGVLPFDGGETAALDRVESYVWAGDHLREYKETRNGLLGADYSSKFSPWLNEGC 289
Query: 348 ISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYK 406
+S RY+ EV YE RV NDSTYW++FEL WRD+F+F K+G+ F G R + +
Sbjct: 290 LSSRYVKAEVDRYEARRVENDSTYWLVFELRWRDFFQFQFAKHGSDCFRREGIRERTDID 349
Query: 407 WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEW 466
W +D FE W G TG P +DANM+EL+ TG+MSNRGRQ A SFL D+ +DWR GA +
Sbjct: 350 WRRDDAQFERWAAGKTGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAY 409
Query: 467 FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
FET L+DYDP SNYGNW Y AGVGND R DR F + QA YD + EYV WLP+L ALP
Sbjct: 410 FETRLVDYDPASNYGNWAYIAGVGNDSR-DRSFDVRWQATRYDEDAEYVKTWLPELDALP 468
Query: 527 KERRNFP 533
E + P
Sbjct: 469 AEYAHEP 475
>gi|292656958|ref|YP_003536855.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|448293557|ref|ZP_21483662.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|291372215|gb|ADE04442.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|445570418|gb|ELY24981.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
Length = 503
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 212/485 (43%), Positives = 270/485 (55%), Gaps = 47/485 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT-----TYHFGFPKTGALRA 136
++ WFR D R L + A A ++ V+PVYCVDPR F F KTGA RA
Sbjct: 5 TSLAWFRRDHR-LHDNAAFAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRA 63
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+F +E LADLR +L +RG +L++R G+PE ++P +A + A V EE VE
Sbjct: 64 RFRLESLADLRASLRDRGSDLVVREGRPESVLPEVAAAVDADFVTVHTRPTPEESRVESA 123
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V L+ + +L+ WG T+ HLD +P S LPD YT FRK++E
Sbjct: 124 VETELRDGGV------------ELRRFWGHTLTHLDGLPMALSDLPDTYTTFRKAVELAA 171
Query: 257 TVRGCIR------------------IPSSFGP--PPSVVDWGSVPLIEQL-------ELH 289
G +P P P D G +P + L
Sbjct: 172 EDAGTGDAAAGDEHASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANADR 231
Query: 290 SPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSIS 349
+P + F GGE+AAL RV Y W D L+ YKE RN +LG DYS+KFSPWL G +S
Sbjct: 232 APDDRGVLPFDGGETAALDRVESYIWAGDHLREYKEARNGLLGADYSSKFSPWLNEGCLS 291
Query: 350 PRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWS 408
PRY+ EV YE RV NDSTYW++FEL WRD+F+F K+G+ FH G R + + W
Sbjct: 292 PRYVKAEVDRYEDRRVENDSTYWLVFELRWRDFFQFQFAKHGSDCFHREGIRERTDIDWR 351
Query: 409 QDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFE 468
+D FE W G TG P +DANM+EL+ TG+MSNRGRQ A SFL D+ +DWR GA +FE
Sbjct: 352 RDDAQFERWAAGKTGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAYFE 411
Query: 469 TCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
T L+DYDP SNYGNW Y AGVGND RE R F + QA YD + EYV WLP+L ALP E
Sbjct: 412 TRLVDYDPASNYGNWAYIAGVGNDSRE-RSFDVRWQANRYDEDAEYVKTWLPELDALPAE 470
Query: 529 RRNFP 533
+ P
Sbjct: 471 YAHEP 475
>gi|126662376|ref|ZP_01733375.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
gi|126625755|gb|EAZ96444.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
Length = 440
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/450 (43%), Positives = 279/450 (62%), Gaps = 29/450 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLR +DN +L A ++ V+ +YC+DPRH + T FGF KT R+QFL+E
Sbjct: 9 GLVWFRNDLRTIDNHSLYNACRENDTVIGIYCLDPRHFEIT-PFGFKKTEKFRSQFLLET 67
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ +L+KNL+ + + LL+ +G PE +IP + + H++Y+Q E SEE +E+ +R NL
Sbjct: 68 VTELQKNLLEKNIRLLVYYGYPEILIPEIIAKYQIHSIYSQHEWTSEENEIEQEIR-NLI 126
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF-DHSSLPDVYTHFRKSIEAKCTVRGC 261
V D+ HP D+PF D +P+V+T FRK IE K VR
Sbjct: 127 SAVNWKNHYDQFLFHPA-------------DLPFEDWKKIPEVFTDFRKQIEKKIRVRPT 173
Query: 262 IRIP--------SSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
+ I P P++ D G E + P+ + F GGE+ A R+ +Y
Sbjct: 174 VAISPKPLTNLIEETTPIPTLKDLGFDS--EASDFKQPEKT-AFPFKGGENHAKKRIKDY 230
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
FW L VYK+TRN ++G +YS+K S WLA+GS+S R IY EV+ +E++ + N+ TYW+
Sbjct: 231 FWDTKKLAVYKKTRNGLIGKNYSSKLSAWLANGSVSARTIYWEVQKFEKKVIKNEDTYWL 290
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
+FEL+WRDYF++ISLK+GN +F L G + EY W+Q++K F W +G T ++ANM E
Sbjct: 291 IFELIWRDYFKYISLKHGNKIFQLNGILQKEYHWNQNKKAFNQWANGTTPEHFVNANMIE 350
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L TG+MSNRGRQ S+ ++ DWR+GA +FE+ L+DYD SNYGNW Y AGVGNDP
Sbjct: 351 LQKTGWMSNRGRQNVASYWAKEWEQDWRIGAAYFESMLIDYDVHSNYGNWMYNAGVGNDP 410
Query: 494 REDRYFSIPKQAQNYDREGEYVAYWL-PQL 522
R DR F+I +QA+ YD +G++ WL P+L
Sbjct: 411 R-DRKFNIKRQAEMYDADGKFQKMWLIPEL 439
>gi|322368590|ref|ZP_08043158.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
DX253]
gi|320551874|gb|EFW93520.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
DX253]
Length = 520
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/497 (41%), Positives = 283/497 (56%), Gaps = 55/497 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYH-----FGFPKTGALRA 136
A+VWFR DLRV DN AL A +E + VYC DPR + + F + KTG+ R
Sbjct: 3 TALVWFRTDLRVRDNRALAVA-SEAERLRCVYCFDPREFGSREYGGKDSFRYEKTGSHRT 61
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+FL E + LR +L RG L++RHG+PEE++PSLA A V EE VER
Sbjct: 62 RFLRESVEALRISLRERGNELVVRHGRPEEVVPSLAADIDADLVCFHALPTPEERAVERA 121
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE-AK 255
V + L ++ ++ ++ IWG T+YH DD+P + + D +T FR+++E +
Sbjct: 122 VTERL--------ADPETDVDADVESIWGHTLYHPDDVPVPVAEIDDTFTTFRQTVERSD 173
Query: 256 CTVRGCIRIPSSFGPPPSVV----------------DWGSVPLIEQLELHSPKVS--KGM 297
VR + P++ P P V D G++P L + P + +
Sbjct: 174 ADVRPTVDTPTTLPPVPEEVTEAGKREGEGEDGDEIDPGTIPSFADLGVEPPTRDERRVL 233
Query: 298 RFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
F GGE A L R+ Y W +D L+ YKETRN +LG DYS+K SPWL +G +SPR ++E V
Sbjct: 234 DFEGGEPAGLERLERYVWTRDRLREYKETRNGLLGSDYSSKLSPWLNAGCLSPRTVFETV 293
Query: 358 KSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKL---- 413
+ YERERV N+STYW++FEL+WRD+F+F K+G+ F G R+ W +
Sbjct: 294 QRYERERVENESTYWLVFELLWRDFFQFQFAKHGSQPFKRRGIRRRTIDWRNGEGDGDSG 353
Query: 414 -----------------FESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDM 456
FE W+ G TG P +DANM+EL+ TG+MSNRGRQ S L D+
Sbjct: 354 HDGGDEGSGDDGDGECEFERWKRGETGIPFVDANMRELNETGYMSNRGRQNVASVLANDL 413
Query: 457 GIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVA 516
IDWR GA +FET L+DYDP SNYGNW Y AGVGND R +R F + QA++YD + YV
Sbjct: 414 RIDWRKGAAYFETKLVDYDPASNYGNWAYVAGVGNDSR-NRSFDVLWQAEHYDPDAAYVK 472
Query: 517 YWLPQLKALPKERRNFP 533
YWLP+L+ +P E+ + P
Sbjct: 473 YWLPELRDVPDEKAHEP 489
>gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii
ATCC 33406]
gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cytophaga hutchinsonii ATCC 33406]
Length = 434
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/445 (44%), Positives = 267/445 (60%), Gaps = 28/445 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+IVWF+ DLR+ DNE L++A + S+ ++PVYC+D H + T FGF KTG RAQFL+E
Sbjct: 4 SIVWFKTDLRLHDNETLVRAIEQSDEIIPVYCLDEDHFKIT-PFGFQKTGNFRAQFLLES 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DL NL G L++ GKPE + + K + A V+A++E EE E V K +
Sbjct: 63 LNDLDTNLRKLGSGLIVVRGKPETELYKIVKQYEAFKVFAKREVAYEEQQTEARVEKEIW 122
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
++ + +S ST +YH D+PF +P+V+T+FRK +E + ++R
Sbjct: 123 KLGCTFESFSTST------------LYHAQDLPFSIKDIPEVFTNFRKKVEKESSIRSVF 170
Query: 263 RIPSSFGPP-------PSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+ P+ P P+V G P+I+ P+ M+F GGES R+ Y +
Sbjct: 171 QKPAHIKSPAMPQLRLPTVKGLGLQPVIQ-----DPRAV--MKFTGGESEGCKRLTSYLF 223
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ L+ YK TR+ M+G DYSTKFSPWLA G +SPR IY E+K YE AN+STYW++F
Sbjct: 224 ETQLISHYKNTRDGMIGSDYSTKFSPWLALGCLSPREIYTELKKYESRFSANESTYWLIF 283
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WRDYFRF+ K+ + F G + QD + W +G TG IDANM EL
Sbjct: 284 ELLWRDYFRFMMKKHKHQFFLYSGIKDSANASGLQDTAILSQWINGKTGNDFIDANMLEL 343
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TGFMSNRGRQ A S+L D+GIDWR GA +FE L+DYD CSN+GNW Y AGVGNDPR
Sbjct: 344 THTGFMSNRGRQNAASYLCNDLGIDWRYGAAYFEQQLIDYDVCSNWGNWAYLAGVGNDPR 403
Query: 495 EDRYFSIPKQAQNYDREGEYVAYWL 519
R F+I KQA+ YD + + WL
Sbjct: 404 GKRNFNIEKQAEEYDPKKLFRNLWL 428
>gi|313676689|ref|YP_004054685.1| cryptochrome, dash family [Marivirga tractuosa DSM 4126]
gi|312943387|gb|ADR22577.1| cryptochrome, DASH family [Marivirga tractuosa DSM 4126]
Length = 475
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/454 (43%), Positives = 271/454 (59%), Gaps = 36/454 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+++WFR +LR+ DN+ALL+ +SE L +Y D R + G ++ + FL +
Sbjct: 8 SLIWFRKNLRLKDNQALLEGVQNSEKYLLLYIFDEREWKKN-PVGLKRSSDKKLNFLWQS 66
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR---- 198
+ DL++N+ +G L++ G E++I L+ A+YA KE+ +EE +E+ V
Sbjct: 67 VLDLKQNIEAKGGQLVMLKGDAEDLIQRLSIENKFDALYAPKESGTEEFELEKSVEDFFI 126
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
K+ +V +Q TT++H DDIP+ LPD++T FRK E + V
Sbjct: 127 KHRAKVDFYAQ----------------TTLFHEDDIPWPIGKLPDIFTQFRKENEKQTGV 170
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELH-------SPKVSKGMRFVGGESAALGRVN 311
R P S+P+ E E SP+ + F GGE+ A R+
Sbjct: 171 RDLFESPEDLS--------ASIPVKEVFEFSDLAIGSISPEEKSVLNFQGGETHAWERLE 222
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
YFW D LK YK TRN +LG YS+KFSPWLA G ISP+ IY +VK YE+ER N STY
Sbjct: 223 YYFWDSDQLKEYKNTRNGLLGERYSSKFSPWLALGCISPKSIYYQVKQYEKERKKNQSTY 282
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
W++FEL+WRDYF F+ K+G LF G + W D +LFE W+ TG P IDANM
Sbjct: 283 WMIFELIWRDYFHFVLKKFGAQLFQKEGIKGKGVDWKWDLELFEKWKTAETGVPFIDANM 342
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL+ TGFMSNRGRQ SFLV+D+G+DWRMGA +FE L+DYD SN+GNW Y AGVGN
Sbjct: 343 RELNATGFMSNRGRQNVASFLVKDLGLDWRMGAWYFEHQLIDYDVASNWGNWAYVAGVGN 402
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
DPRE+RYF+I QA+ YD +G+YV +W+P+LK +
Sbjct: 403 DPRENRYFNILSQAKKYDVKGDYVRHWIPELKEI 436
>gi|448622828|ref|ZP_21669477.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
gi|445753336|gb|EMA04753.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
Length = 518
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 216/494 (43%), Positives = 277/494 (56%), Gaps = 61/494 (12%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT-----TYHFGFPKTGALRA 136
++ WFR DLR L + A L A ++ V+PVYCVDPR F F KTGA RA
Sbjct: 5 TSLAWFRRDLR-LHDNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRA 63
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+F +E L+DLR +L +RG +LL+R G+PE ++P +A + A V EE +VE
Sbjct: 64 RFRLESLSDLRASLRDRGSDLLVREGRPESVLPEVAAAVDADVVTVHTRPTPEESSVESA 123
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V L+ + +L+ WG T+ H+DD+P S+LPD YT FRK++E+
Sbjct: 124 VETELRD------------DGVELRRFWGHTLTHVDDLPMALSALPDTYTTFRKAVESAA 171
Query: 257 --------TVRGCIRI--------------------------PSSFGPPPSVVDWGSVPL 282
T RG R+ P+ P D G +P
Sbjct: 172 EDADADAATGRGSARVGDSAVGDHVGRNSSGRNLAGRDPLSEPTVPPLPRDAPDAGDLPA 231
Query: 283 IEQL------ELHSPKVSKG-MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDY 335
+ L E +G + F GGE+AAL RV Y W D L+ YKETRN +LG DY
Sbjct: 232 VSDLVGIPDAEFDPAPDDRGVLPFDGGETAALDRVASYIWAGDNLREYKETRNGLLGADY 291
Query: 336 STKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLF 395
S+KFSPWL G +SPRY+ EV YE RVANDSTYW++FEL WRD+F+F K+G F
Sbjct: 292 SSKFSPWLNEGCLSPRYVKAEVDRYEDRRVANDSTYWLVFELRWRDFFQFQFAKHGRDFF 351
Query: 396 HLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR 454
G R + + W +D FE W G TG P +DANM+EL+ TG+MSNRGRQ A SFL
Sbjct: 352 RREGIRERTDIDWRRDDAQFERWAAGKTGIPFVDANMRELNATGYMSNRGRQNAASFLAN 411
Query: 455 DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEY 514
D+ +DWR GA +FET L+DYDP SNYGNW Y AGVGND R DR + QA+ YD EY
Sbjct: 412 DLRLDWRRGAAYFETRLVDYDPASNYGNWAYIAGVGNDSR-DRSLDVRWQAKRYDENAEY 470
Query: 515 VAYWLPQLKALPKE 528
V WLP+L ALP E
Sbjct: 471 VTTWLPELDALPAE 484
>gi|390338240|ref|XP_783613.3| PREDICTED: cryptochrome DASH-like [Strongylocentrotus purpuratus]
Length = 417
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/395 (44%), Positives = 251/395 (63%), Gaps = 17/395 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ I RNDLR DNE L A ++ V+P+YC DPRH + T+ FGFPKTG R +FL+E
Sbjct: 7 IVICLLRNDLRYRDNEVLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRLKFLLE 66
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG---AHAVYAQKETCSEELNVERLVR 198
+ DLR L + G L++R G PE+++P L + FG AV Q+E EEL+VE +
Sbjct: 67 SVRDLRTTLQSVGSGLVVRSGNPEDVVPQLIQQFGEGEVAAVALQEEATREELDVEAGLH 126
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
++ ++ + Q+K WG+T+YH +D+PF +P+VYT FRK +E + V
Sbjct: 127 QSCSKLGV------------QVKKFWGSTLYHREDVPFSPQGVPNVYTEFRKKVENRSHV 174
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK--GMRFVGGESAALGRVNEYFWK 316
R I +P P V+ G +P+ L P F GGE+ L R+ +YFWK
Sbjct: 175 RPPINMPKPLKGLPQGVEEGDIPVFSSFGLKDPGSDSRTAFPFQGGETTGLARIEDYFWK 234
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
D + YKETRN ++G +YSTKF+ WLA G +SPR I+ EVK YE+ER N STYWV+FE
Sbjct: 235 SDCIAKYKETRNGLIGSEYSTKFAAWLAHGCVSPRQIHAEVKRYEKERTENQSTYWVIFE 294
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L+WRDYF+F++LK+G+ +F+L G + W+++++ F++W G TG P +DAN++E++
Sbjct: 295 LIWRDYFKFVALKFGDKMFYLSGLLGVHKPWNKNKQWFDAWCKGQTGVPFVDANIREMAA 354
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCL 471
TGFMSNRGRQ SFL +D+ +DWR+GAEWFE L
Sbjct: 355 TGFMSNRGRQNVASFLTKDLVLDWRLGAEWFEQML 389
>gi|402493769|ref|ZP_10840518.1| DASH family cryptochrome [Aquimarina agarilytica ZC1]
Length = 432
Score = 370 bits (950), Expect = e-99, Method: Compositional matrix adjust.
Identities = 194/443 (43%), Positives = 263/443 (59%), Gaps = 21/443 (4%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
++WFRNDLR+ D ++L + V+ VYC DPR T+ FGF KT R QFLI
Sbjct: 2 STGLIWFRNDLRINDQQSLALSTQKHHKVIGVYCFDPRQFSTSV-FGFKKTEKFRTQFLI 60
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
E + L+ NL + L + PE ++P + + +Y QKE +EEL V V+K
Sbjct: 61 ETVTQLKLNLAKYNIPLFVYSATPETMLPEIVTTHNCTHIYCQKEWTAEELQVTTAVKKA 120
Query: 201 L-QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L +++ +S D+ HP D IPF P ++THFRKSIE + V
Sbjct: 121 LIPKLIAWVESYDQFLFHP-------------DSIPFSVEKTPQIFTHFRKSIEKQTLVL 167
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQL---ELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
+I SSF P + + ++P + L +P S F GGE+AAL R++ Y W
Sbjct: 168 PIAKISSSFKQQP-IENNSTIPKLTDLGFDNFETPSHS-AFPFKGGENAALDRLHNYIWV 225
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
+ YK+TRN +LG DYS+KFS WLA+GSIS + IY E+K YE+E NDSTYW++FE
Sbjct: 226 SKKISYYKKTRNGLLGSDYSSKFSAWLANGSISAKTIYFEIKKYEKEVQKNDSTYWLIFE 285
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L+WRDYF++ISLK+ N++F +GG EY WS D K W +G TG +DANM EL
Sbjct: 286 LIWRDYFKYISLKHQNAIFKIGGILNKEYAWSTDLKPVNEWINGTTGKTFVDANMLELQH 345
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG+MSNRGRQ S+ +D+ +DWR+GA +FE L+DYD SNYGNW Y AGVGNDPR D
Sbjct: 346 TGWMSNRGRQNVASYFAKDLLLDWRIGAAYFEAQLIDYDVHSNYGNWMYVAGVGNDPR-D 404
Query: 497 RYFSIPKQAQNYDREGEYVAYWL 519
R F++ QA+ YD ++ WL
Sbjct: 405 RKFNVDLQAKRYDPNYKFQRLWL 427
>gi|163754253|ref|ZP_02161376.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
algicida OT-1]
gi|161326467|gb|EDP97793.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
algicida OT-1]
Length = 432
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 195/442 (44%), Positives = 262/442 (59%), Gaps = 22/442 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+VWFRNDLR+ D +L+KA + V+ VYC DPRH + FGF KTG RAQFLIE
Sbjct: 4 TGLVWFRNDLRIHDQVSLVKAAKENSFVMAVYCFDPRHFEKD-RFGFVKTGKYRAQFLIE 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
++DL+ L + L + KPE+++ K +VY+QKE SEE+ V V+K L
Sbjct: 63 TVSDLQNQLNELNIPLFVHFEKPEKVVSEYVKIHKVTSVYSQKEWTSEEVAVSSAVKKAL 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
V +S D+ HP+ DIP +P V+T FRK E +R
Sbjct: 123 SNEVNWVESYDQFLFHPE-------------DIPMTIDKIPQVFTVFRKKCEKYAQIREL 169
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR----FVGGESAALGRVNEYFWKK 317
I S V VP + L L P + R F GGE+AAL R+ +Y W
Sbjct: 170 ETI-SKMPEKNRVTHLTKVPTLHDLGL--PAFEQDTRTAFPFKGGETAALQRLQDYAWNT 226
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
L YK+TRN ++G YS+KFS WLA+GS+SPR IY EVK YE E + N STYW++FEL
Sbjct: 227 KKLSYYKKTRNGLVGTAYSSKFSAWLANGSLSPRMIYHEVKKYESEIIKNQSTYWMIFEL 286
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRD+F++ISLK+GN++F L G Y+W+ D KL + W DG T P ++ANM EL T
Sbjct: 287 IWRDFFKYISLKHGNNIFKLEGILHKAYEWNTDSKLIQQWIDGETAAPFVNANMLELKHT 346
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQ S+ + + +DWR+GA +FE+ L+DYD SNYGNW Y +GVGNDPR +R
Sbjct: 347 GWMSNRGRQNVASYFAKTLELDWRIGAAYFESLLIDYDVHSNYGNWLYVSGVGNDPR-NR 405
Query: 498 YFSIPKQAQNYDREGEYVAYWL 519
F++ QA+ YD ++ WL
Sbjct: 406 TFNVKLQAERYDANKKFQNLWL 427
>gi|381205367|ref|ZP_09912438.1| deoxyribodipyrimidine photolyase [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 516
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 196/476 (41%), Positives = 281/476 (59%), Gaps = 32/476 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCV-DPRHSQTTYHFGFPKTGALRAQFLI 140
+VW RNDLR+ D+ L A + S+ +L +YC+ D TTY GFPK +R +FL
Sbjct: 51 TTLVWLRNDLRLHDHLPLQCALEKSDRLLLIYCLPDSWFQPTTY--GFPKISNVRLEFLF 108
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ LADLRK+ RG L+ R G P ++I LA+ + V+A +E EE E +R+
Sbjct: 109 QSLADLRKHAQERGGELIFRQGNPPKVIAELAEHYQVDGVFAHREHAPEEKREEDKLRET 168
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L+ L+L G ++ ++PF LP V+++FRK +E + +
Sbjct: 169 LKV---------------PLRLYDGNSLLKETELPFSLVDLPKVFSNFRKQVEKEVQISR 213
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHS--PKVSKGMRFVGGESAALGRVNEYFWKKD 318
I +P P G +P +E + + RFVGGE+AAL RV Y WK
Sbjct: 214 PIAVPKILPAQPQNCLPGIIPNLEDMGFEPLIRDIRSVYRFVGGETAALSRVQHYLWKSH 273
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
+K YK+TRN ML PD S K SPWLA G +SP+++Y+EV+ YE + +ANDSTYW++FE+
Sbjct: 274 AIKTYKKTRNGMLKPDDSAKLSPWLALGCLSPKHVYQEVRRYENDVIANDSTYWLIFEIW 333
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++FR+I+ +G +LF GG R K + K ++W G TG P +DA+M++L+ TG
Sbjct: 334 WREFFRWITRLHGENLFRSGGIRNQSPKVANWDKCLDAWCQGQTGVPFVDAHMRKLNATG 393
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ SFLVRD+ DWR+GA +FE+ L+DYD SN+GNW Y AGVGNDPREDRY
Sbjct: 394 YMSNRGRQNVASFLVRDLRQDWRLGAAYFESRLIDYDVHSNWGNWNYVAGVGNDPREDRY 453
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALP------------KERRNFPGGSYIEQIV 542
F++ Q YD GE++ W+P+L+ +P ++R + G+Y E IV
Sbjct: 454 FNLVTQTLRYDPNGEFIIRWVPELRDVPPKEIPHIVQFTRQQREKYRLGAYPEPIV 509
>gi|384248698|gb|EIE22181.1| cryptochrome [Coccomyxa subellipsoidea C-169]
Length = 566
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 205/495 (41%), Positives = 284/495 (57%), Gaps = 72/495 (14%)
Query: 84 IVWFRNDLRVLDNE------ALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQ 137
++WFRNDLR+ DN L++ +SE V+P+YC DPR T +G PKTGA A
Sbjct: 7 VLWFRNDLRLTDNAIVHQAAQLIQKKQASE-VVPLYCFDPRQYIAT-PWGNPKTGAHHAS 64
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
FL++ + DL++ L + G +L+I GKPEE I L + V AQ E EEL+V+ V
Sbjct: 65 FLLQSVLDLKQRLRDIGSDLVIHMGKPEEAIQGLCREGQQLTVLAQMEVTKEELDVDEGV 124
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF--DHSSLPDVYTHFRKSIEAK 255
R L + +L+L+WG T+YH DD+PF D S LPDV+T F++ +EA+
Sbjct: 125 RAAL-------------GSRGRLQLLWGNTLYHKDDLPFRSDMSELPDVFTPFKQKVEAR 171
Query: 256 CTVR--------GCIRIPSSFGP------PPSVVDWGSV-----PLIEQLELHSPKVSKG 296
C VR G + + + P P V D +V P + L H +
Sbjct: 172 CEVRAPLPAPKEGALPLAADLDPARLSRKPSCVEDLNAVVPEGAPRLASLPRHP---NAA 228
Query: 297 MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE 356
+ F GGE+AAL R+ Y W + Y +TRN MLG DYSTKFSPWLA G ISP I+ E
Sbjct: 229 IAFEGGETAALRRLKHYLWDTGCISTYFDTRNGMLGADYSTKFSPWLARGCISPSTIFHE 288
Query: 357 ------------VKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE 404
VK YE + +N STYWV+FEL WRD+FR+ ++K+G+++F+ G
Sbjct: 289 ARAFLTLAAAEIVKRYEEQHGSNKSTYWVIFELTWRDFFRYFTIKHGSAIFYKHGVTGQP 348
Query: 405 YKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWR--- 461
+W D +LF WRDG TG PL+DANM+E+ TGFMSNRGRQ S+L D+G+DWR
Sbjct: 349 RQWVNDLELFRRWRDGRTGMPLVDANMREMKATGFMSNRGRQNVASYLTLDLGLDWRKRE 408
Query: 462 ----------MGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDRE 511
GA+WFE+ L+DYD CSN+GNW AG+ +F+I KQ+++YD +
Sbjct: 409 ETGAKATDVLQGADWFESALVDYDVCSNWGNWVAAAGLTGG--RINHFNITKQSKDYDEK 466
Query: 512 GEYVAYWLPQLKALP 526
G+Y+ W+P+L +P
Sbjct: 467 GDYIRTWVPELAKVP 481
>gi|433461813|ref|ZP_20419414.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
gi|432189636|gb|ELK46722.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
Length = 481
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 194/447 (43%), Positives = 267/447 (59%), Gaps = 18/447 (4%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFRNDLRV D+ L +A S + V+ +Y DP + G KT RA+FLIE
Sbjct: 5 ALVWFRNDLRVHDHHPLHQAVQSGKPVIGMYVFDPAAYERGED-GIRKTDRHRARFLIES 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ DLRKNL G+ L++R + E I + + AVY +E EE VE VR+ L
Sbjct: 64 IHDLRKNLGALGIPLIVRCRRTTEAIHEIKEKIKIDAVYVHEEIGREEQTVEENVRQALP 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT-VRGC 261
+ G +Y DD+PF LPD ++ FRK +E T VR
Sbjct: 124 DTAFHVEH--------------GHNLYLPDDLPFSIQELPDTFSQFRKRLEKSGTSVRKA 169
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
I P+ V G +P +E L + R+ GG S A R+ +Y + KD LK
Sbjct: 170 IAPPAPEDQAELPVPEGDIPTLETLGFDP--ADEAPRYPGGSSEARKRLIDYIFTKDRLK 227
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
+YK+TRN ML D S+KFSP+LA+G +SPR +YE++++YER AN+STY + FEL+WRD
Sbjct: 228 IYKQTRNGMLKEDDSSKFSPYLANGCLSPRVVYEQIQAYERTNGANESTYMLYFELLWRD 287
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF + KYG+ +F+ G W +D++L ++W DG TGYPL+DA M+EL TGF+S
Sbjct: 288 YFHLVHRKYGDRIFYRSGLSGKAIPWERDEQLLQAWIDGKTGYPLVDAGMRELKETGFLS 347
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ SF +++G+DWR+GA WFE+ L+DYD SNYGNW Y AGVGND R F++
Sbjct: 348 NRGRQNVASFFTKNLGLDWRIGARWFESQLVDYDVSSNYGNWLYIAGVGNDAVPFRAFNV 407
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKE 528
KQA++YD +G Y+ +WLP+L ALP +
Sbjct: 408 EKQAKDYDPDGSYLRHWLPELAALPAD 434
>gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299]
gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299]
Length = 488
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 210/492 (42%), Positives = 290/492 (58%), Gaps = 64/492 (13%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-----VLPVYCVDPRHSQTTYHFGFPKTGALRAQF 138
+VWFRNDLR+ DN A+ +A + VLP+Y DPR + +G PK G R +F
Sbjct: 3 VVWFRNDLRLQDNYAVKQAESIATRTAGCDVLPLYVFDPRTFAPS-SWGSPKCGGHRGRF 61
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPS-LAKSFGAHAVYAQKETCSEELNVERLV 197
+E + +L++NL G +LL+ GKPEE+IP L + GA +E CSEEL V+ V
Sbjct: 62 QLESVLNLKRNLRAIGSDLLVAVGKPEEVIPKYLLDAPGAK----NEEVCSEELRVDAKV 117
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF--DHSSLPDVYTHFRKSIEAK 255
+ ++ + N +L IWG+T+YH DD+PF D S LPDV+T FR +E+K
Sbjct: 118 KSAVKS----------AGNLNRLDKIWGSTLYHKDDLPFRSDASDLPDVFTPFRNKVESK 167
Query: 256 CTVR--------GCIRIPS----SFGPPPSVVDWGSVPLIEQLE-------LHSPKVSKG 296
R G + +PS +F P+V D +P + E H V
Sbjct: 168 SEPREPVPPPAKGALPVPSDMTEAFAFEPTVAD---LPFANEDERAIAAAGAHPDGV--- 221
Query: 297 MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE 356
+ F GGESAAL RV Y W+ + + Y ETRN MLG DYS+K +PWLA G +SPR + E
Sbjct: 222 LPFEGGESAALARVRYYVWESEKIATYFETRNGMLGGDYSSKLAPWLAHGCVSPRQVVAE 281
Query: 357 VKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFH----------LGGPRKLEYK 406
V+ +E +RV N STYW++FEL+WRD+F+F +LK+GN++F G +
Sbjct: 282 VRKFESQRVENKSTYWLIFELIWRDFFKFFALKHGNAIFFSEGTAGGKMGGAGYKGGAGP 341
Query: 407 WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEW 466
W D +W++G TGYPL+DANM+EL+ TGFMSNRGRQ S+L D G+DWR+GAEW
Sbjct: 342 WRDDPAALAAWKEGKTGYPLVDANMRELAATGFMSNRGRQNVASWLALDAGVDWRLGAEW 401
Query: 467 FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
FE LLDYD +N+GNW AG+ R ++ F+I KQ ++YD EGEY+ YW+P+L+ +P
Sbjct: 402 FENKLLDYDCSANWGNWVAAAGMTGG-RVNK-FNIAKQTKDYDPEGEYIKYWVPELRKVP 459
Query: 527 ----KERRNFPG 534
E R PG
Sbjct: 460 AKYIAEPRQMPG 471
>gi|307107980|gb|EFN56221.1| hypothetical protein CHLNCDRAFT_51884 [Chlorella variabilis]
Length = 1184
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 207/499 (41%), Positives = 291/499 (58%), Gaps = 63/499 (12%)
Query: 83 AIVWFR-NDLRVLDNEALLKAWDSSEM-----VLPVYCVDPRHSQTTYHFGFPKTGALRA 136
A++WFR DLR+ DN + +A E VLP++C DPR+ Q + +G PKTG RA
Sbjct: 17 AVIWFRGTDLRLHDNAIVHEAARRVEAGQVAEVLPLFCFDPRYFQAS-AWGSPKTGQFRA 75
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA---HAVYAQKETCSEELNV 193
+FL+E + DL+ L G +LLI G+PEE++P L G+ V AQ E SEEL +
Sbjct: 76 RFLLESVRDLKARLRALGSDLLICMGRPEEVLPGLMAQRGSGLQTCVLAQSEVTSEELAI 135
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHS--SLPDVYTHFRKS 251
E K ++ V+++ +L L WG+TMYHL+D+PF +PDV+T F++
Sbjct: 136 E----KKVKSAVVAAGG--------KLDLYWGSTMYHLEDLPFREGLRDMPDVFTPFKQK 183
Query: 252 IEAKCTVR--------GCIRIPSSFGP------PPSVVDWGSVPLIEQLELHSPK--VSK 295
E +C VR G + +P+ P V D +V +L SP+
Sbjct: 184 CEDRCQVRKPFPAPAPGALPLPAGLEAARLAFEPQRVEDLNAVVPEGHPQLASPQRDTRA 243
Query: 296 GMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE 355
+ F GGESAAL R+ Y + +L+ Y +TRN MLG DYSTK +PWLA G +SPR +Y
Sbjct: 244 VLDFEGGESAALARLRYYLFDSNLVATYFDTRNGMLGGDYSTKLAPWLAHGCLSPRSVYY 303
Query: 356 EVKSYERER-VANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLF 414
++K YER+ AN STYWV+FEL+WRD++RF +LK+G+ +F GG +WS D +
Sbjct: 304 DIKRYERQTGTANKSTYWVVFELIWRDFYRFFALKHGSKIFLEGGTTGQAPQWSNDAEAL 363
Query: 415 ESWRDGCTGYPLIDANMKELSMT--------------------GFMSNRGRQIACSFLVR 454
W++G TG+PL+DAN +EL T GFMSNRGRQ SFL
Sbjct: 364 RRWKEGRTGWPLVDANQRELRATGKSRPAGGRPMRIRALLLACGFMSNRGRQNVASFLAL 423
Query: 455 DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEY 514
D+G+DWR GA+WFE LLDYD CSN+GNW AG+ R ++ F+I KQ+++YD EG+Y
Sbjct: 424 DLGVDWRRGADWFEHLLLDYDVCSNWGNWVAAAGLTGG-RVNK-FNITKQSKDYDSEGQY 481
Query: 515 VAYWLPQLKALPKERRNFP 533
+ W+P+L +P R + P
Sbjct: 482 IRTWVPELACVPARRIHEP 500
>gi|86140426|ref|ZP_01058985.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
MED217]
gi|85832368|gb|EAQ50817.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
MED217]
Length = 432
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 184/441 (41%), Positives = 273/441 (61%), Gaps = 19/441 (4%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLRV DN +L KA ++ ++ VYC DPR Q FGF KT RAQFLIE +
Sbjct: 4 LVWFRNDLRVKDNTSLFKASKNANLLAAVYCFDPRQFQED-QFGFKKTERFRAQFLIETV 62
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+LR++L + + + + +PE+I+P L + ++ Q+E SEE V R V+++
Sbjct: 63 TELREHLAELNIPIFVYNEQPEDILPQLIERLQIDQLFFQEEWTSEEQEVTRKVKESCSA 122
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRGCI 262
V ++S D+ HP+ D+P+ ++P+V+T +RK E +R +
Sbjct: 123 SVKFTESYDQFLIHPE-------------DLPYKSIEAIPNVFTQWRKKCEKNLNIRKEV 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHS--PKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
I + F + S+P ++ L L S P F GGE AL R+ +YFW+ L
Sbjct: 170 SI-TEFPQTNFEENSTSIPTLQDLNLESFTPDHRSAFPFKGGEQQALNRIEDYFWQTRKL 228
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
VYK+TRN + G +YS+K S WLA+G IS R IY ++K++E+E N+STYW+ FELMWR
Sbjct: 229 AVYKKTRNGLTGKNYSSKLSAWLANGGISARTIYWKIKAFEQEETKNESTYWLFFELMWR 288
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+F++ISLKYG+ +F +GG + +Y W ++ + W +G T Y ++ANMKE++ TG+M
Sbjct: 289 DFFKYISLKYGDQIFKIGGILEKDYDWKTNKAAKKEWINGQTKYDFVNANMKEIAATGWM 348
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ S+ +++ DWR+GA +FE+ L+DYD SNYGNW Y +GVGNDPR DR F+
Sbjct: 349 SNRGRQNVASYWAKELQQDWRIGAAYFESMLIDYDVHSNYGNWMYNSGVGNDPR-DRKFN 407
Query: 501 IPKQAQNYDREGEYVAYWLPQ 521
I QA+ YD +G++ WL +
Sbjct: 408 IKSQAERYDGDGKFRRLWLQE 428
>gi|363581247|ref|ZP_09314057.1| cryptochrome-like DNA photolyase [Flavobacteriaceae bacterium HQM9]
Length = 432
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 192/441 (43%), Positives = 262/441 (59%), Gaps = 17/441 (3%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
++WFRNDLRV D ++L +A + V+ VYC DPR T +GF KTG R QFLI
Sbjct: 2 STGLIWFRNDLRVNDQKSLAEATRKHDSVIGVYCFDPRQFSTD-PYGFIKTGKFRTQFLI 60
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
E + L+ NL + L + KPE+ +P + + +Y QKE SEEL V V+K
Sbjct: 61 ETVEQLKLNLAKFNIPLFVYFNKPEDKLPEIISAHNCTHIYCQKEWTSEELKVTNAVKKA 120
Query: 201 L-QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + +V +S D+ +Y D+I F +P V+T FRKS+E V
Sbjct: 121 LTKNLVAWIESYDQ-------------FLYQPDNIQFTIEKIPQVFTRFRKSVEKYAKVE 167
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIE-QLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
I ++ P + L + F GGE++AL R+N YFW+
Sbjct: 168 DLATIDPAYLQNPIENKTKILNLTDLGFTYFETPSHTAFPFKGGENSALERLNSYFWETK 227
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L YK+TRN +LG DYS+KFS WLA+GSIS + IY +VK +E+E NDSTYW++FEL+
Sbjct: 228 KLAYYKKTRNGLLGTDYSSKFSAWLANGSISAKTIYIQVKKFEKEIKKNDSTYWLIFELL 287
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRDYF++ISLK+GNS+F +GG Y WS D ++ + W G TG P +DANM EL TG
Sbjct: 288 WRDYFKYISLKHGNSIFKIGGILNKNYNWSTDMEVVQHWIHGNTGKPFVDANMLELQQTG 347
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ S+L +D+ +DWR+GA +FE+ L+DYD SNYGNW Y AG+GNDPR DR
Sbjct: 348 WMSNRGRQNVGSYLAKDLLVDWRIGAAYFESMLIDYDVHSNYGNWMYVAGIGNDPR-DRK 406
Query: 499 FSIPKQAQNYDREGEYVAYWL 519
F++ QA+ YD ++ WL
Sbjct: 407 FNVDLQAERYDTNKKFQRLWL 427
>gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
Length = 1025
Score = 364 bits (934), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 215/498 (43%), Positives = 290/498 (58%), Gaps = 61/498 (12%)
Query: 84 IVWFRNDLRVLDNEAL------LKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQ 137
++WFRNDLR+ DN + +K ++SE VLPVYC DPR TT +G KTGA RA
Sbjct: 11 VLWFRNDLRLHDNYIVHDAVQRVKRGEASE-VLPVYCFDPRVYGTT-PWGHFKTGAHRAA 68
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAK-SFGAHAVYAQKETCSEELNVERL 196
FL+EC+ DL+ L + G +LL+ GKPEE++P L + S G V +E SEE +
Sbjct: 69 FLLECVTDLKSRLRDVGSDLLVAFGKPEEVLPGLLEGSSGPSLVLTAEEVTSEETRTDVA 128
Query: 197 VRKNLQQV----VLSSQSNDKSTNHPQLKLIWGTTMYHLDDI--PFDHSS---------- 240
V + L+Q ++ + + +L WG TMYH+DD+ P +
Sbjct: 129 VARALKQQRRPQADAAAAAGGGSGSAKLLRFWGHTMYHIDDLTQPPEGGGKAAFAPGMKD 188
Query: 241 LPDVYTHFRKSIEAKCTVRGCIRIP--SSFGPPPS--------VVDWGSVPLIEQLE--- 287
+PDV+T FR+ +E +C VR + +P PP+ + P EQL
Sbjct: 189 MPDVFTPFREKVEKRCPVRKDLPLPQKGDLPLPPTEALPAAAAAALAAAPPTWEQLPYPP 248
Query: 288 -------LHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFS 340
PK + F GGE+AAL R+ Y W DL+ Y +TRN MLG DYSTKF+
Sbjct: 249 AARPPPPTKHPKAV--LDFKGGETAALARLRYYLWDSDLIASYFDTRNGMLGGDYSTKFA 306
Query: 341 PWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGP 400
PWLA+G ISPR IY E++ YE +R +N STYWV+FEL+WRDYFRF +LK+GN +F G
Sbjct: 307 PWLAAGCISPRKIYHEIRKYEAQRQSNKSTYWVIFELIWRDYFRFFALKHGNRIFFETGT 366
Query: 401 RKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDW 460
L W+ D L+ WRDG TG PL+DANM+EL+ TGFMSNRGRQ S+LV D+GIDW
Sbjct: 367 SGLPLVWNPDADLWHRWRDGRTGLPLVDANMRELAATGFMSNRGRQNLASYLVLDLGIDW 426
Query: 461 RMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQA------------QNY 508
R GA++FE+ LLDYD SN+GNW AG+ +F+I KQA ++Y
Sbjct: 427 RRGADYFESQLLDYDVTSNWGNWVAAAGLAGG--RINHFNIAKQASDVGAFRIGGGSKDY 484
Query: 509 DREGEYVAYWLPQLKALP 526
D +G+YV W P+L+ +P
Sbjct: 485 DPQGDYVRTWCPELRHVP 502
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 172/415 (41%), Positives = 231/415 (55%), Gaps = 52/415 (12%)
Query: 160 RHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQV----VLSSQSNDKST 215
RHG+P L S G V +E SEE + V + L+Q ++ + +
Sbjct: 536 RHGRPHASSGLLEGSSGPSLVLTAEEVTSEETRTDVAVARALKQQRRPQADAAAAAGGGS 595
Query: 216 NHPQLKLIWGTTMYHLDDI--PFDHSS----------LPDVYTHFRKSIEAKCTVRGCIR 263
+L WG TMYH+DD+ P + +PDV+T FR+ +E + VR +
Sbjct: 596 GSAKLLRFWGHTMYHIDDLTQPPEGGGKAAFAPGMKDMPDVFTPFREKVEKRFPVRKDLP 655
Query: 264 IP--SSFGPPPS--------VVDWGSVPLIEQLE----------LHSPKVSKGMRFVGGE 303
+P PP+ + P EQL PK + F GGE
Sbjct: 656 LPQKGDLPLPPTEALPAAAAAALAAAPPTWEQLPYPPAARPPPPTKHPKAV--LDFKGGE 713
Query: 304 SAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE 363
+AAL R+ Y W DL+ Y +TRN MLG DYSTKF+PWLA+G ISPR IY E++ YE +
Sbjct: 714 TAALARLRYYLWDSDLIASYFDTRNGMLGGDYSTKFAPWLAAGCISPRKIYHEIRKYEAQ 773
Query: 364 RVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTG 423
R +N STYWV+FEL+WRDYFRF +LK+GN +F G L W+ D L+ WRDG TG
Sbjct: 774 RQSNKSTYWVIFELIWRDYFRFFALKHGNRIFFETGTSGLPLVWNPDPDLWHRWRDGRTG 833
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
PL+DANM+EL+ TGFMSNRGRQ S+LV D+GIDWR GA++FE+ LLDYD SN+GNW
Sbjct: 834 LPLVDANMRELAATGFMSNRGRQNVASYLVLDLGIDWRRGADYFESQLLDYDVTSNWGNW 893
Query: 484 TYGAGVGNDPREDRYFSIPKQA------------QNYDREGEYVAYWLPQLKALP 526
AG+ +F+I KQA ++YD +G+YV W P+L+ +P
Sbjct: 894 VAAAGLAGG--RINHFNIAKQASDVGAFRIGGGSKDYDPQGDYVRTWCPELRHVP 946
>gi|224003307|ref|XP_002291325.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
CCMP1335]
gi|220973101|gb|EED91432.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
CCMP1335]
Length = 571
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 209/496 (42%), Positives = 290/496 (58%), Gaps = 45/496 (9%)
Query: 88 RNDLRVLDNEALLKAWDSS-------------EMVLPVYCVDPRH---SQTTYHFGFP-K 130
+ DLR+ DN AL D S +LPV+ D S G K
Sbjct: 17 QTDLRLHDNPALCHTVDLSLGTSSSDAASTAPTGILPVFVFDTTRIYGSNAKSRLGNNLK 76
Query: 131 TGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLA----KSFGAHA----VYA 182
G RA+F IE +ADLR NL RG L++ G PE I+ +A +S G V
Sbjct: 77 CGPRRARFAIEAVADLRSNLEKRGSGLVVAVGSPESILARIATAAVESSGDKGALINVVC 136
Query: 183 QKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHS--S 240
Q+E CSEEL+V++ +R +L + + KST+ + +WG+TMY + +PFD
Sbjct: 137 QEEVCSEELSVDKAIRSSLAKTM-------KSTSKFTFETVWGSTMYDPETLPFDGGVFG 189
Query: 241 LPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWG-SVPLIEQLELHSPKVSKGMRF 299
+PD+++ FRK +EAKC + S P++ D G + IE + + + + +
Sbjct: 190 VPDIFSPFRKDVEAKCQIVNDANNKCSLKYMPTLSDLGYNAEDIESVSSVDSRTALPVNY 249
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
GGE+ AL RV +Y W KDLLK+Y +TRN M+G DYSTKF+PWLA G++SPRYI E
Sbjct: 250 RGGETFALRRVKDYIWDKDLLKLYFDTRNGMIGSDYSTKFAPWLALGNVSPRYIARECSR 309
Query: 360 YERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG----PRKLEYKWSQDQKLFE 415
YE +RV N STYWV+ EL+ RD+F+F + K+G+ +F+L G R E KW D+K +
Sbjct: 310 YEEQRVQNKSTYWVVLELLIRDHFKFFAKKHGDKVFYLTGNIGKQRGSERKWGMDRKKIQ 369
Query: 416 SWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYD 475
+W+DG TG+PL+DANM+EL+ TGFMSNRGRQ SFL D+ IDWR G E+FE LLDYD
Sbjct: 370 AWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTIDLNIDWRYGGEYFEETLLDYD 429
Query: 476 PCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP-- 533
SN+GNW AG+ R +R F+I KQ+++YD GEYV W P+LK +P + + P
Sbjct: 430 VHSNWGNWCSAAGM-TGGRLNR-FNIVKQSKDYDFGGEYVRLWCPELKNVPDKHIHSPWE 487
Query: 534 -GGSYIEQI-VSLKHG 547
G +E+ V + HG
Sbjct: 488 MSGEMMEECGVKIGHG 503
>gi|374596767|ref|ZP_09669771.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Gillisia limnaea DSM 15749]
gi|373871406|gb|EHQ03404.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Gillisia limnaea DSM 15749]
Length = 433
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 190/442 (42%), Positives = 265/442 (59%), Gaps = 18/442 (4%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+IVWFRNDLR+ DN++L A +SEMV+ VY +DP + FGF KTG RA+FL+E
Sbjct: 4 SIVWFRNDLRIADNKSLSVACKNSEMVIGVYFMDPEKFEIG-EFGFKKTGKFRAKFLLES 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +L NL ++LLI KPE L + F ++Y QKE EE + V L
Sbjct: 63 LQELWDNLRKLNISLLIIKDKPESKFTELVERFQITSLYLQKEWTPEETKTLKAVTSILP 122
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFD-HSSLPDVYTHFRKSIEAKCTVRGC 261
+ V +K + +YH +DIPFD +P V+T FRK E VR
Sbjct: 123 EAV-------------NVKEHYNQFLYHPEDIPFDTFRDIPQVFTEFRKKCEKNGKVRPV 169
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS--KGMRFVGGESAALGRVNEYFWKKDL 319
I IP + + ++P +++L + + F GGE A R+ +YFW+
Sbjct: 170 IPIPEKLPNENLLSEIANLPTLKELGFENFETDPRTAFPFKGGEDQAKIRLEDYFWETKK 229
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L VYK+TRN +LG DYS+KFS WLA+G ISP +Y E++ +E + N+ TYW++FEL+W
Sbjct: 230 LAVYKKTRNGLLGKDYSSKFSSWLANGCISPTIVYREIRKFEDKVTKNEDTYWLIFELLW 289
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RD+F++ISLK+GN +F +GG K +Y W D ++ + W G T ++ANM EL+ TGF
Sbjct: 290 RDFFKYISLKHGNDIFKVGGVLKKDYSWGHDDRIKDLWIQGKTKENFVNANMNELAKTGF 349
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ CSF +++ DWR+GA +FE+ L+DYD SN+GNW Y +GVGNDPR DR F
Sbjct: 350 MSNRGRQNVCSFWSKELQQDWRIGAAYFESMLIDYDVHSNWGNWMYNSGVGNDPR-DRKF 408
Query: 500 SIPKQAQNYDREGEYVAYWLPQ 521
+I QA+ YD G+Y WL +
Sbjct: 409 NIKSQAERYDPAGKYQQTWLQE 430
>gi|372269296|ref|ZP_09505344.1| cryptochrome-like DNA photolyase [Alteromonas sp. S89]
Length = 434
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 190/446 (42%), Positives = 266/446 (59%), Gaps = 22/446 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPV---YCVDPRHSQTTYHFGFPKTGALRAQF 138
+ +VWF ++LR DN+AL +A S+ PV YC DP+ T FGFP+TG RAQF
Sbjct: 1 MKLVWFLHNLRSHDNQALTQACASANGDTPVIALYCFDPQFFSTD-PFGFPRTGKFRAQF 59
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L++ L DL++ L + + LLIR G P ++IP L ++ Q+E +E
Sbjct: 60 LLQSLEDLKQQLADLNIPLLIRQGAPAQVIPELVTEHAVTELFLQREWTRDE-------- 111
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF-DHSSLPDVYTHFRKSIEAKCT 257
+ VL+S + + + + + H DD+PF + + LP+V+T FRK IE +
Sbjct: 112 ----RTVLTSLQAAPAMDAVHIHTDYDQFLIHPDDLPFAEVAELPEVFTQFRKVIEQQLP 167
Query: 258 VRGCIRIPSSFGPPPSVVDWGS--VPLIEQLELHSPKVS--KGMRFVGGESAALGRVNEY 313
+R + PS GS +P IE L L PK F GG SA R+ EY
Sbjct: 168 IRSPLPTPSPRAAKNLTAAGGSSSIPSIEGLGLEQPKADPRSAFPFSGGSSAGKQRIEEY 227
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
FW + + YK+TRN ++G +YS+K S WLA+GS+S R +Y E+K +ERE AN+ TYW+
Sbjct: 228 FWNSENITRYKQTRNGLIGTEYSSKLSAWLANGSLSAREVYAELKRFEREVTANEDTYWL 287
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WRDYF++ISLK+G+ LF L G R +Y W D + +W DG T Y ++ANM+E
Sbjct: 288 QFELLWRDYFKYISLKHGDRLFALSGIRARKYTWQLDPEKLAAWIDGRTPYDFVNANMRE 347
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
+ TG+MSNRGRQ S+ +++ DWR GA WFE+ L+DYD SNYGNW Y +GVGNDP
Sbjct: 348 FAATGWMSNRGRQNVASYWAKELQQDWRAGAAWFESQLIDYDVHSNYGNWMYNSGVGNDP 407
Query: 494 REDRYFSIPKQAQNYDREGEYVAYWL 519
R DR F+I +QA+NYD +Y WL
Sbjct: 408 R-DRRFNIERQAENYDPHKQYRRLWL 432
>gi|88802284|ref|ZP_01117811.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
gi|88781142|gb|EAR12320.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
Length = 436
Score = 361 bits (926), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 185/449 (41%), Positives = 261/449 (58%), Gaps = 18/449 (4%)
Query: 75 LKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
+++ + ++WFRN+LRV DN++L KA ++ V+ VY DP+ + FGF KT +
Sbjct: 1 MQKKQENTGVIWFRNNLRVQDNQSLTKAIENHSKVIAVYFFDPKLFKID-SFGFQKTASF 59
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
R +FLIE + DL+KNL + LL PE + +L F +Y QKE EE+ +
Sbjct: 60 RTKFLIETITDLKKNLAALNITLLTYMESPENKMHTLCDEFSVGTIYTQKEWTREEIATD 119
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
++ L + V D+ +YH D + D S +PDV+T FRK +E
Sbjct: 120 NFIKSTLPETVRFVADYDQF-------------LYHPDAVSRDFSKIPDVFTIFRKKVEK 166
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKV--SKGMRFVGGESAALGRVNE 312
V + + + ++P +E L K F GGE+AAL R+
Sbjct: 167 TVAVEKECTV-TKLSERNLIETETAIPSMESLGFSDTKTHAKTAFPFKGGETAALERLQY 225
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
YF++ + YK TRN ++G DYSTKFSPWLA+GS+S + IY ++K YE E +N STYW
Sbjct: 226 YFFESKKVSFYKNTRNGLVGTDYSTKFSPWLANGSLSAKTIYWKIKEYEAEFGSNQSTYW 285
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
V+FEL+WRDYF++ISLKY +F +GG + Y+W+ DQK + W +G T ++ANM
Sbjct: 286 VIFELIWRDYFKYISLKYNAKVFRIGGILEKTYEWNTDQKTVQQWINGETKDAFVNANMI 345
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TGFMSNRGRQ S+ +D+ +DWR+GA +FE+ LLDYD SNYGNW Y AGVGND
Sbjct: 346 ELKETGFMSNRGRQNVASYFAKDLLLDWRIGAAYFESVLLDYDVHSNYGNWMYVAGVGND 405
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQ 521
PR DR F+ QA YD+ +Y WL +
Sbjct: 406 PR-DRKFNTKMQADRYDQNHKYRKLWLEK 433
>gi|303287382|ref|XP_003062980.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455616|gb|EEH52919.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 561
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 200/486 (41%), Positives = 287/486 (59%), Gaps = 48/486 (9%)
Query: 84 IVWFR-NDLRVLDN------EALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRA 136
++WFR DLR+ DN AL+ + VLPV+C DPR + +G PKTG RA
Sbjct: 12 LLWFRGTDLRLRDNLVVDAASALVASGSGDVDVLPVFCFDPRTFAAS-AWGTPKTGGRRA 70
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+FL+E + DL+++L + G +LL+ GKPE++IP G + V Q+E EE V+
Sbjct: 71 RFLLESVLDLKRSLRDVGSDLLVAVGKPEDVIPRYLLEGGTNVVLTQEEVHQEERRVDAA 130
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF--DHSSLPDVYTHFRKSIEA 254
+ V +++ N ++ +W +TMYH+DDIPF D S +P+ +T FR +E+
Sbjct: 131 I---ASAVKIANPKN-------AMRTVWNSTMYHVDDIPFNADASDVPNGFTPFRNKVES 180
Query: 255 KCTVRGCIRIPSSFGPP--------------PSVVDWGSVPLIEQLELHSPKVSKG-MRF 299
K TVR P P PS+ D E+ +P + F
Sbjct: 181 KATVRAPAPSPKPGALPLAKASIDASVLEYEPSLDDLPFATEDERARAKAPTHPNAVLPF 240
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
GGE+AAL RV Y W+ + +K Y ETRN MLG DYS+K SPWLA G +S R+++ EV+
Sbjct: 241 EGGETAALARVEYYVWESEKIKTYFETRNGMLGGDYSSKLSPWLAHGCVSARHVHREVRK 300
Query: 360 YERERVANDSTYWVLFELMWRDYFRFISLKYGNSLF--HLGGPRKLEYK-----WSQDQK 412
YERERV N STYW++FEL+WRD+F + + K+GN++F H R + W D
Sbjct: 301 YERERVENKSTYWLIFELIWRDFFIYFAKKHGNAIFTPHGTAGRGGTWTGGAGPWRDDPA 360
Query: 413 LFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLL 472
++W++G TG+PL+DANM+EL+ TGFMSNRGRQ S+L D G+DWR+GAE+FE+ L+
Sbjct: 361 ALKAWKEGKTGFPLVDANMRELAATGFMSNRGRQNVASWLCLDAGVDWRLGAEYFESALI 420
Query: 473 DYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPK----E 528
DYD +N+GNW AG+ R ++ F+I KQ ++YD +G YV W+P+LK +PK +
Sbjct: 421 DYDCAANWGNWVSAAGLTGG-RVNK-FNIAKQTKDYDPDGRYVKTWVPELKDVPKGFVAD 478
Query: 529 RRNFPG 534
R PG
Sbjct: 479 PRRMPG 484
>gi|295135590|ref|YP_003586266.1| cryptochrome-like DNA photolyase [Zunongwangia profunda SM-A87]
gi|294983605|gb|ADF54070.1| cryptochrome-like DNA photolyase family protein [Zunongwangia
profunda SM-A87]
Length = 429
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 189/446 (42%), Positives = 269/446 (60%), Gaps = 23/446 (5%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
++WF N+LRV DN+AL +A + E V+ VYC DPR + T +GFPKTG RA+FLI
Sbjct: 2 STGLIWFENNLRVKDNKALFEACEKHEQVIAVYCFDPRKFKKT-KYGFPKTGKFRAKFLI 60
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
E + +L++NL ++LLI KPEEIIP +A++ A+Y Q+E +EE + ++K
Sbjct: 61 ESIKNLQENLNQLNISLLIFLQKPEEIIPEIARNHKIEAIYFQEEWTTEEKQIIAALKKK 120
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF-DHSSLPDVYTHFRKSIEAKCTVR 259
L + S + ++H +DI + D + +P VYT FRK E VR
Sbjct: 121 LPTIDFQS--------------FYTQFLFHPEDIAYGDFNEIPKVYTEFRKKCEQYVDVR 166
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLEL--HSPKVSKGMRFVGGESAALGRVNEYFWKK 317
I IP + + P +++L L + F GGE A R++ YFWK
Sbjct: 167 KEIEIPKQKPESNRIKNTSKTPNLKELGLEDYQQDSRTAFSFKGGEDEAWKRIDYYFWKT 226
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
L YK+TRN +LG DYS+K S WLA+GSIS I+ +VK +E E N TYW++FEL
Sbjct: 227 TKLSEYKQTRNGLLGKDYSSKLSAWLANGSISAVSIFHQVKKFEHEITKNQDTYWLIFEL 286
Query: 378 MWRDYFRFISLKYGNSLFHLGG--PRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
+WRD+F++ SLK+GNS+F L G +KL++K+S + + W +G T ++AN+ E++
Sbjct: 287 IWRDFFKYTSLKHGNSIFKLSGILDKKLDWKFSIES--LQQWINGETKEDFVNANINEIA 344
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TGFMSNRGRQ SF +++ DWR GA +FE+ L+DYD SN+GNW Y +GVGNDPR
Sbjct: 345 ATGFMSNRGRQNVNSFWAKELKQDWRAGAAYFESVLVDYDVHSNWGNWMYNSGVGNDPR- 403
Query: 496 DRYFSIPKQAQNYDREGEYVAYWLPQ 521
DR F+I KQA YD + +YV WL +
Sbjct: 404 DRKFNIKKQADLYDPDNQYVDTWLKK 429
>gi|397601068|gb|EJK57807.1| hypothetical protein THAOC_22117 [Thalassiosira oceanica]
Length = 605
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 209/509 (41%), Positives = 285/509 (55%), Gaps = 69/509 (13%)
Query: 78 NGKGVAIVWFR-NDLRVLDNEALLKAWDSS--------------------EMVLPVYCVD 116
N + V I WFR DLR+ DN AL ++ D S +LPV+ D
Sbjct: 9 NARPVNIHWFRQTDLRLHDNPALRRSVDLSLGKSKNPVVGAAVSESPPHRGNILPVFVFD 68
Query: 117 PRH---SQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAK 173
S T G K A RAQF+++ ++DLR NL RG L+I GKPE++I LAK
Sbjct: 69 TSRIYGSNTRSELGSLKCSARRAQFVLQAVSDLRSNLEKRGSGLIIGVGKPEDVIAELAK 128
Query: 174 ------SFGAHA-VYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGT 226
S GA + Q+E CSEEL E+ +R L + + D T +WG
Sbjct: 129 GVLTQSSNGAKLNIVCQEEVCSEELATEKAMRSKLARAMNKGSKFDFET-------VWGG 181
Query: 227 TMYHLDDIPFDH--SSLPDVYTHFRKSIEAKCTVRGCIRIPS------------------ 266
TMY + +PFD + +PD +T FR +E C + + +PS
Sbjct: 182 TMYDPETLPFDGGVNGIPDTFTPFRNKVEKACAIGNPLPVPSDEELAMPKDAHTIVKESK 241
Query: 267 ---SFGPPPSVVDWG-SVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
S P++ D S IE+ EL + + + GGE+ AL RV +Y W +DLLK
Sbjct: 242 CHASLDYMPTLADLQYSKEDIEEAELVDIRSALPAGYRGGETFALARVKDYIWDRDLLKG 301
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
Y +TRN M+G DYSTKF+PWLA G++SPRYI E + YE RVAN STYWV+FEL+WRDY
Sbjct: 302 YFDTRNGMIGSDYSTKFAPWLALGNVSPRYIARECRRYEETRVANKSTYWVVFELLWRDY 361
Query: 383 FRFISLKYGNSLFHLGGP-----RKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
F+ + K+G S+F + G + KW D + ++W+DG TGYPL+DANM+EL T
Sbjct: 362 FKMFAKKHGASIFMIDGTIGKRDHANKRKWGNDPRHIKAWKDGMTGYPLVDANMRELKAT 421
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GF SNRGRQ CSFL D+ +DWR GA++FE L+DYD SN+GNW G+G+ R +R
Sbjct: 422 GFQSNRGRQNVCSFLTIDLNMDWRYGADYFEETLIDYDVHSNWGNWASGSGMTGG-RLNR 480
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALP 526
F+I KQ+++YD G+YV W P+L+ +P
Sbjct: 481 -FNIVKQSKDYDYGGDYVRLWCPELEGVP 508
>gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
Length = 469
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 204/469 (43%), Positives = 280/469 (59%), Gaps = 52/469 (11%)
Query: 84 IVWFRNDLRVLDNEAL------LKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQ 137
++WFRNDLR+ DN + +K ++SE VLPVY DPR T +G KTGA RA+
Sbjct: 11 VLWFRNDLRLHDNYIVHEAAQRVKRGEASE-VLPVYVYDPRFFAAT-PWGALKTGAHRAK 68
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-VYAQKETCSEELNVERL 196
F+ EC+ADLR+ L G +L++ G+PE+++P+L + GA V +E SEE V+
Sbjct: 69 FIQECVADLRQRLQGLGSDLVVAVGQPEQLLPALLEGGGAAPLVLTAEEVTSEEAAVDVA 128
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + ++ +L WG TMYH DD+ LPDV+T F++ +E
Sbjct: 129 VARAIKPA------------GGKLLRYWGHTMYHYDDL-----DLPDVFTPFKEKVEK-- 169
Query: 257 TVRGCIRIPSSFGPPP------------SVVDWGSVPLIEQLELHSPKVSKGMRFVGGES 304
R + +P P P + W +P + PK + F GGE+
Sbjct: 170 --RAALPLP----PAPRLGATAAAALAAPLPGWEQLPPAPPVT--HPKAV--LDFKGGET 219
Query: 305 AALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERER 364
AAL R+ Y W DLL Y +TRN MLG DYSTKF+PWLA G ISPR I+ E++ YE +R
Sbjct: 220 AALARLKYYLWDSDLLSTYFDTRNGMLGGDYSTKFAPWLAQGCISPRKIFHEIRKYESQR 279
Query: 365 VANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGY 424
+N STYWV+FEL+WRD+FRF +LK+GN +F G L W+ D +L+ WR+G TG
Sbjct: 280 FSNKSTYWVIFELIWRDFFRFFALKHGNRIFFETGTSGLPLVWNPDPELWARWREGRTGL 339
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
PL+DANM+EL+ TGFMSNRGRQ S+LV D+G+DWR GA++FE LLDYD SN+GNW
Sbjct: 340 PLVDANMRELAATGFMSNRGRQNVASYLVLDLGVDWRRGADYFEEVLLDYDVTSNWGNWV 399
Query: 485 YGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
AG+ +F+I KQ+++YD GEYV W P+LK +P + + P
Sbjct: 400 AAAGLTGG--RVNHFNIAKQSKDYDPTGEYVKTWCPELKNVPVTKVHEP 446
>gi|257053657|ref|YP_003131490.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
gi|256692420|gb|ACV12757.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
Length = 478
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 193/456 (42%), Positives = 266/456 (58%), Gaps = 24/456 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPR-HSQTTY----HFGFPKTGALRA 136
A+VW R DLR DN L A +++ VLPVYC +PR + Q + F + GA RA
Sbjct: 4 TAVVWLRRDLRTRDNATLAAA-CAADRVLPVYCFEPRRYGQRAFGGAASFEYDGVGAGRA 62
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
QF E + DLR L G +L +RHG+P+ ++P L ++ A ++ Q EE E
Sbjct: 63 QFEREAVGDLRDRLREIGSDLFVRHGRPDAVLPDLVEAVDADHLHYQTLPIPEERTREHQ 122
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
VR+ L + V + W T++H++D+P + +PD +T +R+S+EA+
Sbjct: 123 VRRALPEAVTVERH-------------WTHTLHHVEDLPTPYDEMPDTFTPWRQSVEAES 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLEL--HSPKVSK-GMRFVGGESAALGRVNEY 313
VR I P+ P G +P + L + P + + F GGE+ R+ +Y
Sbjct: 170 RVREPIEAPAVPPVPADAPQPGPIPELADLGVVGDVPDDDRMPLDFEGGETPGQRRLEQY 229
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
W+ D L+ YK+TRN ++G DYS+KFSPW G +SPR +Y+ VK YERERV+NDSTYW+
Sbjct: 230 VWETDSLRAYKQTRNGLVGRDYSSKFSPWQNVGCLSPRDVYQTVKEYERERVSNDSTYWL 289
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
FEL WRD+F+F KYG F GG R + + W +D+ F W++G TG P +DA M+
Sbjct: 290 NFELRWRDFFQFQFAKYGGKFFTPGGIRERTDLDWRRDESDFRRWQEGRTGVPFVDAAMR 349
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TG++SNR RQ A SFLV D+GIDWR G +E LLDYDP SNYGNW Y A VGND
Sbjct: 350 ELVATGYVSNRARQNAASFLVHDLGIDWRWGGAHYEHHLLDYDPASNYGNWAYIAKVGND 409
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
RE F + QA+ YD GEY++ W P+L L E
Sbjct: 410 SREGG-FDVLSQAERYDPGGEYISRWCPELDGLIAE 444
>gi|85818697|gb|EAQ39857.1| cryptochrome, DASH family [Dokdonia donghaensis MED134]
Length = 432
Score = 354 bits (908), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 188/450 (41%), Positives = 270/450 (60%), Gaps = 33/450 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+VWFRN+LRV DN +L A + + V+ VY DPRH + FGF KT RA+FLIE
Sbjct: 3 TALVWFRNNLRVQDNASLTAAIATGKRVVGVYYFDPRHYEEG-DFGFKKTEKYRAKFLIE 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ +L+ NL R + LL+ + KPEE I S+ KS+ ++++QKE +EE+ V V + +
Sbjct: 62 TIENLKANLDKRNITLLVYNLKPEEHITSVVKSYKVTSLHSQKEWTAEEVKVTNAVERAI 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRG 260
+V +H +L++ ++H DDIPF+ + +P ++T FRK E + VR
Sbjct: 122 PEV-----------SH---ELVYDQFLFHPDDIPFNTITEVPKIFTQFRKKCEKESDVRP 167
Query: 261 CIR---------IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
+ I ++ P ++ D G ++ P + GGE AA R+N
Sbjct: 168 IFKELTALPQENILTTVTPISTLEDLGLDTFVKDHRTAFP-------WEGGEDAAWARLN 220
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
+YFW L YK+TRN ++G YS+K S WLA+GSIS R IY +VK +E+E N TY
Sbjct: 221 DYFWTTQKLAYYKKTRNGLIGEGYSSKLSAWLANGSISARQIYWKVKRFEKEVKKNQDTY 280
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
W++FEL+WRDYF+++SLK+G+++F +GG EY W + K W +G T Y ++ANM
Sbjct: 281 WLIFELIWRDYFKYVSLKHGDNIFKIGGILNKEYDWKHNNKAQREWINGNTKYDFVNANM 340
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
EL TG+MSNRGRQ SF ++ DWR+GA +FE+ L+DYD SN+GNW Y AGVGN
Sbjct: 341 IELKETGWMSNRGRQNVASFWAKEQEQDWRVGAAYFESILIDYDVHSNWGNWMYNAGVGN 400
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQ 521
DPR DR F+I +Q YD G+YV W +
Sbjct: 401 DPR-DRKFNIKRQQDMYDGSGKYVRLWTQE 429
>gi|333898405|ref|YP_004472278.1| DASH family cryptochrome [Pseudomonas fulva 12-X]
gi|333113670|gb|AEF20184.1| cryptochrome, DASH family [Pseudomonas fulva 12-X]
Length = 472
Score = 352 bits (902), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 196/474 (41%), Positives = 273/474 (57%), Gaps = 22/474 (4%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A++WF+ DLR LD+ L+A +S +LP+Y +DP Q FG + G RA+FL+E
Sbjct: 3 ALLWFKQDLR-LDDHPALQAALASNCLLPLYVLDPALLQFD-EFGSRRIGVHRARFLLES 60
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L L RG LL+ GKPEE+I L F V E +E V VR L
Sbjct: 61 LTALDSALRQRGSKLLVVSGKPEEVIAQLVGQFDMRQVITLDEIAPQERAVIARVRDALG 120
Query: 203 QVVL-SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
V L ++QSN ++ ++P LP VY+ FR I+A+ V
Sbjct: 121 PVPLRTAQSNG---------------LFSEAELPCPLDQLPTVYSQFRTLIDARQYVFQP 165
Query: 262 IRIPSSFGPPPSVVDWGS--VPLIEQLELHSPK--VSKGMRFVGGESAALGRVNEYFWKK 317
P P P +D + +P QL L V F GGE+AAL R+ +Y W
Sbjct: 166 QSAPDQLPPLPEGLDINAYGLPTQSQLGLGDALSLVPSAFPFSGGETAALARLRDYLWDS 225
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
++ YK+TRN M+G +YS+KFSPWLA+GS+SPR E++ +E AN+STYW+ EL
Sbjct: 226 QNVRTYKQTRNGMIGSEYSSKFSPWLANGSLSPRRAAAELRRHESLYGANESTYWLWAEL 285
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR++FR +YG +LF GG + E Q + FE W G TG PL+DANM+EL+ T
Sbjct: 286 LWREFFRCTLQRYGQALFEPGGLKATERAPQQIDERFEQWAHGRTGMPLVDANMRELAAT 345
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQ+ S+LV D+ DWR GA WFE L+DYDP SN+GNW Y AGVG+DPR R
Sbjct: 346 GYMSNRGRQVVASYLVSDLQQDWRHGAAWFEEHLIDYDPASNWGNWAYLAGVGSDPRLKR 405
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQ 551
F+ KQA+ YD +GEYV+ W+P+L+ LP+ +R+ P +Q+ ++ + + +
Sbjct: 406 TFNALKQARQYDPQGEYVSLWIPELRNLPEHQRHTPFLLQAQQLDAINYPRLER 459
>gi|449016857|dbj|BAM80259.1| probable cryptochrome DASH [Cyanidioschyzon merolae strain 10D]
Length = 669
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 208/540 (38%), Positives = 288/540 (53%), Gaps = 76/540 (14%)
Query: 49 QVIPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEM 108
+V+P + + +V T SK + G A++WFRNDLR+ DNEAL A + +E
Sbjct: 75 KVLPNTGTTYADSLVFPT----DSKRWPDSLPGTALLWFRNDLRLHDNEALRLA-NRAES 129
Query: 109 VLPVYCVDPRHSQTTYHFG-FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEI 167
+L VY D R+ FG F + G RA FL EC+ DLR+ L +RG L++ G P ++
Sbjct: 130 LLCVYVFDERYFFGKSRFGGFLRIGEHRAYFLRECIVDLRQALRSRGQELIVEIGSPVDV 189
Query: 168 IPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTT 227
IP L + FG + KE EE+ E + + L QV Q + H +W T
Sbjct: 190 IPRLVQKFGVQHLIFSKEVTEEEIATENALVRTLAQVAAQGQISAPVQCH----AVWNAT 245
Query: 228 MYHLDDIPFDHSS-------------------------LPDVYTHFRKSIEAKCTVRGCI 262
+ H++D+P+ PD +T FR+ +E TVR
Sbjct: 246 LVHIEDLPYPFPGKAKDISRRAESPVPKTRGTPAVDRVFPDTFTTFRRLVERSWTVRETW 305
Query: 263 RIPSSFGPPP------SVVDW-GSVPL-----IEQLELHSPKV---------SKGMRFVG 301
+ P P + +DW G++P+ ++ PK+ F G
Sbjct: 306 QCPEVLTLLPDDASNFNTIDWSGALPIEYPAEATRIGAEPPKLLLMRPYPDPRACYDFHG 365
Query: 302 GESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE 361
GE+ AL R+ ++ W+ L YKETRN + GPDYS+KFS +LA G ISPR IY V+ +E
Sbjct: 366 GETVALSRLEDWIWETQSLASYKETRNGLEGPDYSSKFSCFLAHGCISPRLIYNAVRDFE 425
Query: 362 RERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE--YKWSQ---------- 409
R +N+STYW+LFEL+WRD+FRF ++ +GN++F G R + K SQ
Sbjct: 426 RRVESNESTYWLLFELLWRDFFRFTAVHHGNAIFKRRGLRGVRGASKTSQSGARSAVVRQ 485
Query: 410 ------DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMG 463
D +L +W G TG P IDA M+EL +TGFMSNR RQ+ SFL+ D+G+DWR+G
Sbjct: 486 REDVSPDARL-TAWCQGRTGVPFIDAAMRELRLTGFMSNRARQVVASFLINDLGLDWRLG 544
Query: 464 AEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQL 522
AEWFE+ LLDYDPCSN+GNW Y AGVGNDPR RYF KQA +D + W P+L
Sbjct: 545 AEWFESQLLDYDPCSNWGNWCYLAGVGNDPRSGSRYFHPLKQAYEFDPRATFTKRWCPEL 604
>gi|449015358|dbj|BAM78760.1| cryptochrome DASH [Cyanidioschyzon merolae strain 10D]
Length = 598
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 209/498 (41%), Positives = 282/498 (56%), Gaps = 65/498 (13%)
Query: 83 AIVWFRNDLRVLDNEALLKA-WDSSEMVLPVYCVDPR----HSQTTYHFGFPKTGALRAQ 137
+VWFRNDLRV D+EALL A + + ++PVY D R H++T F K RAQ
Sbjct: 4 GLVWFRNDLRVRDHEALLTACLEHAGRIIPVYVFDKRQVGPHARTRLG-QFSKCSTPRAQ 62
Query: 138 FLIECLADLRKNLMN--RGLNLLI-RHGKPEEIIPSL------AKSFGAHAVYAQKETCS 188
FL+E + DL L RG+ LL+ ++ PE +IP L K AVY +E CS
Sbjct: 63 FLVEAVQDLANTLRTHYRGMQLLVYKNALPENVIPKLIAELSTEKQVHVGAVYYHREVCS 122
Query: 189 EELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHS--SLPDVY 245
EE VE +R L L+ + + L+ + G+ T+YH DD+P S ++P V+
Sbjct: 123 EERAVEDALRAAL--CALNQRGELPAVT---LRALDGSSTLYHADDLPSGASVGNMPPVF 177
Query: 246 THFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPL-----------IEQLELH----- 289
T +RK +E +R + +P P + G P+ EQ L
Sbjct: 178 TSWRKLVEKGARIRAPLPMPDPAKVQPLPLSLGCDPIPTCAREVIGDNCEQARLRHRVPW 237
Query: 290 ------SPKVS--KGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSP 341
+ +V F GGESAA RV Y + D + YK TRN +LG +YSTK+SP
Sbjct: 238 TLPDDATSRVDPRHACPFRGGESAAQERVQAYTFGTDAIARYKATRNGLLGTEYSTKWSP 297
Query: 342 WLASGSISPRYIYEEVKSYERERVAND--STYWVLFELMWRDYFRFISLKYGNSLF---- 395
+LA G+++PR +Y ++ YE ER STYWVLFEL WRD+FRF +++YGN+LF
Sbjct: 298 YLALGNVTPRQLYAVLRRYETERPEKKGISTYWVLFELEWRDFFRFTAMRYGNALFWRRG 357
Query: 396 ---------HLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQ 446
+ GP K W QD L + W+ G TG+PL+DAN +EL TG+MSNRGRQ
Sbjct: 358 LQAVLRGDPQVAGPSK---TWRQDAVLLDRWQTGMTGFPLVDANQRELLATGWMSNRGRQ 414
Query: 447 IACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQ 506
SFL +D+ IDWR+GAEWFE+ LLDYD CSNYGNW Y AGVG DPR DR+F + +QA+
Sbjct: 415 NVASFLTKDLEIDWRLGAEWFESLLLDYDACSNYGNWQYAAGVGLDPRADRHFDVIRQAR 474
Query: 507 NYDREGEYVAYWLPQLKA 524
YD EG Y+ WLP+L++
Sbjct: 475 MYDPEGHYMRRWLPELES 492
>gi|257388282|ref|YP_003178055.1| DASH family cryptochrome [Halomicrobium mukohataei DSM 12286]
gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
Length = 483
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 197/467 (42%), Positives = 266/467 (56%), Gaps = 35/467 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+VWFR DLR DN L +A ++ V+P+YC+ P FG + G RAQFLIE
Sbjct: 3 TVLVWFRRDLRCHDNATLRRAVAEADTVVPLYCL-PDRLTGEGMFGLDRVGPHRAQFLIE 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LADLR++L +R L +R G P ++P A+ F A AVY Q EE + VR L
Sbjct: 62 SLADLRESLRDRDGELYVRSGDPGTVVPEAAEEFDADAVYWQALPGPEERDEAGSVRAGL 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR-- 259
+ S++ W T+YH DD+P + D +T ++ EAK TVR
Sbjct: 122 ADAGIDSET------------FWTHTLYHRDDLPRPPDEIEDTFTPWKDRTEAKATVRPP 169
Query: 260 -----------GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG-MRFVGGESAAL 307
G R S P++ D+G E + +G + + GGE+A L
Sbjct: 170 KPAPEWVHAPNGGRRASSGADDLPTLADFGFG------EDEATVDDRGVLDWTGGETAGL 223
Query: 308 GRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN 367
RV Y W++D L+ Y+ETRN ++G DYS+KFSPWL+ G +SPR I+ EV+ YE +RV N
Sbjct: 224 DRVATYVWERDCLREYRETRNGLVGADYSSKFSPWLSFGCLSPRQIHREVEQYETDRVEN 283
Query: 368 DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKL-FESWRDGCTGYPL 426
DSTYW++FEL WRD+F++ KYG F GG R + + + FE W G TG P
Sbjct: 284 DSTYWLVFELTWRDFFQYQLAKYGAKWFQPGGIRDRDDIRWRRDRAQFERWARGETGIPF 343
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DANM+EL+ TG++SNRGRQ SFL ++ IDWR+GA +FE+ L+DYD SN+ NW Y
Sbjct: 344 VDANMRELNATGYVSNRGRQNVASFLSNNLRIDWRLGAAYFESRLVDYDVASNWCNWAYQ 403
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+ VGND R D YF I QA +YD EG YV W P+L ALP E + P
Sbjct: 404 SQVGNDSR-DSYFEIVGQATHYDPEGAYVTRWCPELSALPPEYVHEP 449
>gi|408491986|ref|YP_006868355.1| cryptochrome, DASH family Cry1-like protein [Psychroflexus torquis
ATCC 700755]
gi|408469261|gb|AFU69605.1| cryptochrome, DASH family Cry1-like protein [Psychroflexus torquis
ATCC 700755]
Length = 436
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 186/444 (41%), Positives = 259/444 (58%), Gaps = 25/444 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ IVWFRNDLR D ++L A S VL VYC DP H +TT +GF KT RA+FLIE
Sbjct: 7 ITIVWFRNDLRTRDQKSLFDACQSENAVLGVYCFDPSHFETT-RYGFKKTEKYRAKFLIE 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ L NL + ++L I H P E+ L++ + +V+ Q E EE VE V+ L
Sbjct: 66 SVEQLSDNLQDLNISLHIAHKHPSEVFKELSERYAITSVFYQTEWTREEKRVEAKVKSAL 125
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRG 260
D N+ Q ++H +D+P++ +P+VYT+FRK E + VR
Sbjct: 126 PNA-------DFIENYDQF-------LFHPEDLPYESFQDIPEVYTNFRKKCEKQSEVRQ 171
Query: 261 CIRIPSSFGPPPS---VVDWGSVPLIEQLELHSPKVS--KGMRFVGGESAALGRVNEYFW 315
+ P P P+ + + P + L L + + F GGE+ A R+ YFW
Sbjct: 172 KVPAPQ---PRPTHHLLEERNQAPNLSDLGLENFETDPRSAFPFKGGENEAWKRIEHYFW 228
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
L+ YK+TRN +LG DYS+KFS WLA+GSIS IY EV+++E++ N TYW++F
Sbjct: 229 DTKKLQYYKKTRNGLLGTDYSSKFSAWLANGSISAVSIYHEVRAFEKQVKKNQDTYWLIF 288
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WRDYF++ISLK+GN +F +GG +Y W ++K W +G T ++ANM E+
Sbjct: 289 ELIWRDYFKYISLKHGNKIFQIGGVLNKDYDWGNNKKALRDWINGNTPEDFVNANMIEIK 348
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TGFMSNRGRQ S+ ++ DWR+GA +FE+ L+DYD SN+GNW Y +GVGNDPR
Sbjct: 349 ETGFMSNRGRQNVNSYWAKEWKQDWRIGAAYFESMLVDYDVHSNWGNWMYNSGVGNDPR- 407
Query: 496 DRYFSIPKQAQNYDREGEYVAYWL 519
DR F+I QA YD G+Y WL
Sbjct: 408 DRKFNIKNQADRYDSGGKYQRTWL 431
>gi|86134106|ref|ZP_01052688.1| cryptochrome, DASH family [Polaribacter sp. MED152]
gi|85820969|gb|EAQ42116.1| cryptochrome, DASH family [Polaribacter sp. MED152]
Length = 436
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 180/454 (39%), Positives = 271/454 (59%), Gaps = 28/454 (6%)
Query: 75 LKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
+++ ++WFRN+LR DN ++ KA + + V+ +Y DP++ + FGF KT
Sbjct: 1 MQKKQNTTGLIWFRNNLRTQDNTSIQKAIQNHDKVIAIYFFDPKYFKED-EFGFQKTAKF 59
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RAQFL+E + DL++ L + + LL PE + ++ +++ +Y QKE EEL+
Sbjct: 60 RAQFLLETITDLKQQLKDLNITLLTYFDAPENQLLNITETYKVDTIYTQKEWTKEELDTN 119
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
+LV K + V + D+ +YH + + + S++P+V+T FRK +E
Sbjct: 120 KLVLKTMSDTVNFVEDYDQF-------------LYHPETVSNNFSNIPNVFTQFRKKLEK 166
Query: 255 KCTVRGCIRI----PSSFGPPPSVVDWGSVPLIEQLELHS---PKVSKGMRFVGGESAAL 307
++ I I S+ P+ +P +++L + PK S F GGE+AAL
Sbjct: 167 YVKIQEEILIDKHDDSNLIHNPT-----EIPSLKELGFNDFVMPKKS-AFPFKGGETAAL 220
Query: 308 GRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN 367
R+N Y ++ + YK+TRN ++G DYSTKFSPWLA+GS+S R IY ++K YE E +N
Sbjct: 221 ERLNYYLFESKKVGFYKKTRNGLVGTDYSTKFSPWLANGSLSARTIYYQIKKYEAEFGSN 280
Query: 368 DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLI 427
STYWV+FEL+WRDYF++ISLKYG +F +GG + Y+W+ D+ + W +G T +
Sbjct: 281 QSTYWVIFELIWRDYFKYISLKYGYEIFKIGGILERNYQWNVDKNCIQDWINGNTKDDFV 340
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
+ANM EL TG+MSNRGRQ S+ +++ DWR+GA +FE+ LLDYD SNYGNW Y A
Sbjct: 341 NANMIELKETGWMSNRGRQNVASYFAKELLQDWRIGAAYFESLLLDYDVHSNYGNWMYVA 400
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQ 521
GVGNDPR DR F+ QA+ YD ++ WL +
Sbjct: 401 GVGNDPR-DRKFNTQLQAERYDANHKFRKLWLEK 433
>gi|332292004|ref|YP_004430613.1| DASH family cryptochrome [Krokinobacter sp. 4H-3-7-5]
gi|332170090|gb|AEE19345.1| cryptochrome, DASH family [Krokinobacter sp. 4H-3-7-5]
Length = 432
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 188/443 (42%), Positives = 262/443 (59%), Gaps = 25/443 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+VWFRN+LR DN +L A S + V+ +Y DPR Q FGF KT RAQFLIE
Sbjct: 3 TALVWFRNNLRTQDNSSLTHAIASGKRVIGLYSFDPRQFQIG-DFGFKKTEKYRAQFLIE 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ +L+KNL + + L++ H PE IP L +Y+QKE EE V V + +
Sbjct: 62 TVQNLKKNLNDLNITLIVTHEHPEVTIPDLIDQHDVSEIYSQKEWTREENEVTIAVEEKI 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRG 260
+N K H + ++H +D PF+ +P V+T FRK E + TV+
Sbjct: 122 --------NNAKHYTH------YDQFLFHPEDNPFNSFGDIPQVFTQFRKKCEKESTVQR 167
Query: 261 CIRIPSSFGPPPSVVD-WGSVPLIEQLELHSPKVSKGMR----FVGGESAALGRVNEYFW 315
+ P +++D S+P +++L L + +K R + GGE A R+N YFW
Sbjct: 168 LQEKIKTL-PSKNLLDKESSIPNLQELGLDT--FTKDHRSAFPWNGGEDEAWNRLNNYFW 224
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
L+ YK+TRN ++G DYS+K S WLA+GSIS R IY EVK +E+E ++N TYW++F
Sbjct: 225 NTKKLQYYKKTRNGLVGEDYSSKLSAWLANGSISARQIYWEVKKFEKEIISNQDTYWLIF 284
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WRDYF+++SLK+GN LF +GG Y W ++ K W G T Y ++ANM EL
Sbjct: 285 ELIWRDYFKYVSLKHGNDLFKIGGILHKNYDWKRNDKAQREWIHGNTTYDFVNANMIELK 344
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+MSNRGRQ SF ++ DWR+GA +FE+ L+DYD SN+ NW Y AGVGNDPR
Sbjct: 345 ETGWMSNRGRQNVASFWAKEQQQDWRVGAAYFESVLIDYDVHSNWANWMYNAGVGNDPR- 403
Query: 496 DRYFSIPKQAQNYDREGEYVAYW 518
DR F+I +Q + YD G++V W
Sbjct: 404 DRKFNIKRQQEMYDGNGKFVRLW 426
>gi|89890451|ref|ZP_01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
gi|89517366|gb|EAS20023.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
Length = 442
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 189/449 (42%), Positives = 259/449 (57%), Gaps = 24/449 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFG--------FPKTGALR 135
+VWFRNDLRV DN +L KA D+ V+ +YC DP Q + +FG F KTG R
Sbjct: 4 LVWFRNDLRVTDNHSLKKACDNDGKVIGIYCFDPIFYQNS-NFGLDIDLELPFGKTGKFR 62
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER 195
AQF+IE + DLRK L G+ LL+ H P + P + K + +Y QKE +E+ E
Sbjct: 63 AQFIIEAIEDLRKQLDKHGIPLLVYHDSPVNVFPDIIKEYDITNIYLQKEWTRDEVEQEN 122
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF-DHSSLPDVYTHFRKSIEA 254
L+ L+ + + P+ + +YH D+P+ + +P V+T FRK E
Sbjct: 123 LLGTALKLLEVK----------PKGHRTYDQFLYHPHDVPYSNFQEIPTVFTQFRKKCEK 172
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF--VGGESAALGRVNE 312
+ +R + I PSVV ++P +E L L S + F GG AA R+N
Sbjct: 173 ESHIRTLVDIKDYQQELPSVVS-TTIPQLEDLGLESFEKDHRSAFPWKGGAIAAWERLNH 231
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
YFW L+ YK+TRN ++G DYS+K S WLA G IS R IY EV+ +E+E N TYW
Sbjct: 232 YFWDTGKLQYYKKTRNGLVGIDYSSKLSTWLAIGCISAREIYWEVQRFEKEVKKNQDTYW 291
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
++FEL+WRD+F+++SLK GN +F LGG EY+W ++ W +G T ++ANMK
Sbjct: 292 LIFELIWRDFFKYVSLKNGNDIFKLGGILHKEYEWKSSERELSKWINGETHERFVNANMK 351
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL+ TG+MSNRGRQ S+ DWR+GA +FE L+DYD SNYGNW Y +GVGND
Sbjct: 352 ELAATGWMSNRGRQNVASYWSMHKEQDWRIGAAYFEHILIDYDVHSNYGNWMYNSGVGND 411
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQ 521
PR +R F+I QA YD +G Y WL +
Sbjct: 412 PR-NRTFNIELQASRYDSDGTYQRMWLQE 439
>gi|443244150|ref|YP_007377375.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
gi|442801549|gb|AGC77354.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
Length = 444
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 185/448 (41%), Positives = 262/448 (58%), Gaps = 20/448 (4%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPR-HSQTTYHFG------FPKTGALRA 136
+VWFRNDLRV DN +L A D V+ VYC DP + ++ + F F KTG RA
Sbjct: 4 LVWFRNDLRVTDNHSLKAACDKEGDVIAVYCFDPAFYKESDFGFDLDFKLPFTKTGKYRA 63
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
QF++E L +L+ +L G+ LLI H P + P L K ++ QKE +EL E
Sbjct: 64 QFILEALENLKVDLEEHGIPLLIYHNAPAVVFPDLIKEHQIKKIFLQKEWTCDELQQEEK 123
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFD-HSSLPDVYTHFRKSIEAK 255
+ + L+Q L Q ++ ++H DD+PF+ + +P V+T FRK E +
Sbjct: 124 LGEALEQAGLKDQVKGHR--------VYDQFLFHPDDVPFESFNQIPRVFTEFRKKCEKQ 175
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF--VGGESAALGRVNEY 313
+R + I P V + +P ++ L L + F GG +AA R++ Y
Sbjct: 176 SEIRDLVNIDDYKQELPKV-EQTDLPSLKDLGLEEFEKDHRSAFPWKGGATAAWERLDHY 234
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
FW+ L+ YK+TRN ++G DYS+KFS WLA GSIS R IY EVK +E+E N TYW+
Sbjct: 235 FWETKKLQYYKKTRNGLIGTDYSSKFSAWLAIGSISAREIYWEVKHFEKEVKKNQDTYWL 294
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
+FEL+WRD+F+++SLK+ + +F LGG K +Y+W ++ + W +G T ++ANMKE
Sbjct: 295 IFELIWRDFFKYVSLKHESDIFQLGGILKKDYEWKSSERELDKWINGETHERFVNANMKE 354
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TGFMSNRGRQ S+ DWR+GA +FE L+DYD SNYGNW Y +GVGNDP
Sbjct: 355 LAATGFMSNRGRQNVASYWSMHKEQDWRIGAAYFEHILIDYDVHSNYGNWMYNSGVGNDP 414
Query: 494 REDRYFSIPKQAQNYDREGEYVAYWLPQ 521
R +R F+I QA YD +G+Y WL +
Sbjct: 415 R-NRTFNIKSQADRYDSDGKYQNLWLQE 441
>gi|225011847|ref|ZP_03702285.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
gi|225004350|gb|EEG42322.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
Length = 433
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 182/442 (41%), Positives = 254/442 (57%), Gaps = 21/442 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+VW RNDLR D + A E V+ + +P+ T +GF KTG R FL+E
Sbjct: 3 TALVWLRNDLRFEDQNSFFTACQEHERVVAYFSFEPKDYDKT-MWGFTKTGKFRTHFLLE 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L+ L N+ ++L++ + IP A A++ Q+E EE K +
Sbjct: 62 TLRSLQTELENKNISLIVENRSAATGIPFWLDQLKATALFFQEEWTFEE--------KMI 113
Query: 202 QQVVLSSQSNDKS--TNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
V++ SND + +++ Q +YH +D+ + S+P V+T FRK E +R
Sbjct: 114 SDAVVNQISNDINVYSHYDQF-------LYHPEDVSMEIQSIPKVFTEFRKKCEKFSNIR 166
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLEL--HSPKVSKGMRFVGGESAALGRVNEYFWKK 317
C P + + ++P++E E + + F GG + + YFW
Sbjct: 167 PCFSAPKVLNKSSLLSETPAMPVLEDFEFTPFTHHANSAFPFKGGMVSGNDHLQNYFWNT 226
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
L YK+TRN ++G YS+KFSPWLA+GS+S R IY EV YE+E N+STYW++FEL
Sbjct: 227 KRLSYYKQTRNGLVGVGYSSKFSPWLANGSLSARVIYWEVMRYEKEVKKNESTYWLIFEL 286
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYF++ISLK+GNS+FHLGG K EY W+ Q+ F W +G T P ++ANM EL T
Sbjct: 287 LWRDYFKYISLKHGNSIFHLGGILKKEYTWNSKQEDFLKWVEGETAEPFVNANMIELKKT 346
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ S+ ++M +DWRMGA +FE L+DYD SN+GNW Y AGVGNDPR DR
Sbjct: 347 GFMSNRGRQNVASYFAKNMMMDWRMGAAYFERQLVDYDVHSNWGNWMYVAGVGNDPR-DR 405
Query: 498 YFSIPKQAQNYDREGEYVAYWL 519
F+I QA+ YD G+Y WL
Sbjct: 406 KFNIKLQAERYDSNGKYQNLWL 427
>gi|224002573|ref|XP_002290958.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972734|gb|EED91065.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 420
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 186/429 (43%), Positives = 260/429 (60%), Gaps = 37/429 (8%)
Query: 130 KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA--------VY 181
K G R QF +E +ADLR NL RG L++ G PEEI+ ++A S + V
Sbjct: 4 KCGPRRVQFALEAVADLRSNLEKRGSGLVVAVGNPEEILATIATSAVESSGDNGALINVV 63
Query: 182 AQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHS-- 239
Q+E CSEEL V++ +R +L + + K+ + + +WG+TMY + +PFD
Sbjct: 64 CQEEVCSEELTVDKAIRSSLAKAM-------KTKSKFNFETVWGSTMYDPETLPFDGGVF 116
Query: 240 SLPDVYTHFRKSIEAKCTVRGCIRIPSS--FGPP----PSVVDWG-SVPLIEQLELHSPK 292
+PD +T FR +E C + + P P P++ D G + IE + +
Sbjct: 117 GIPDTFTPFRNKVEKICEIGAPLDCPKDEYLSLPKNYMPTLFDLGYNAEDIESVSSVDSR 176
Query: 293 VSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRY 352
+ + + GGE+ AL RV +Y W K+LLKVY +TRN M+G DYSTKF+PWLA G++SPRY
Sbjct: 177 TALPVNYRGGETFALQRVKDYIWDKNLLKVYFDTRNGMIGSDYSTKFAPWLALGNVSPRY 236
Query: 353 IYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHL--------GGPRKLE 404
I E YE +RV N STYWV+FEL+ RD+F+F + K+G+ +F+L G RK
Sbjct: 237 IARECSRYEEQRVQNKSTYWVVFELLIRDHFKFFAKKHGDKVFYLTGTIGKQRGSERK-- 294
Query: 405 YKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGA 464
KW D+K ++W+DG TG+PL+DANM+EL+ TGFMSNRGRQ SFL DM +DWR G
Sbjct: 295 -KWGMDRKKIQAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTIDMNMDWRYGG 353
Query: 465 EWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKA 524
E+FE LLDYD SN+GNW AG+ R +R F+I KQ+++YD GEYV W P+LK
Sbjct: 354 EYFEETLLDYDVHSNWGNWCSAAGM-TGGRLNR-FNIVKQSKDYDFGGEYVRLWCPELKN 411
Query: 525 LPKERRNFP 533
+P + + P
Sbjct: 412 VPDKYVHSP 420
>gi|403349181|gb|EJY74032.1| putative bacterial cryptochrome [Oxytricha trifallax]
Length = 593
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 273/470 (58%), Gaps = 45/470 (9%)
Query: 84 IVWFRNDLRVLDNEAL---LKAWDSSEMVLPVYCVDPR-HSQTTYHFGFPKTGALRAQFL 139
I+WFRNDLR+ DN + +K ++ ++PV+C DPR H++ FG K G +R +FL
Sbjct: 74 ILWFRNDLRLHDNAIINYAVKHSAPNKQIVPVFCYDPRFHAKKVQQFGTQKCGLVRQRFL 133
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
IE + + R NL G LL+ +PEE IP L + + Q E CSEE+ VER V+K
Sbjct: 134 IETVENFRHNLEKMGSKLLVSMERPEEFIPKLIDQECDNTIVYQDEICSEEMAVERAVQK 193
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
S +K WG+++YH+DD+ F+ LP VYT FR+ + + VR
Sbjct: 194 --------------SCKGANVKTFWGSSVYHVDDLGFEIDHLPQVYTKFRE-VCGRVPVR 238
Query: 260 GCIRIPSSFGPP----------------PSVVDWGSVPLIEQLELHSPKVSKGMRFVGGE 303
P + P P + D+G EQ+ L K S + F+GGE
Sbjct: 239 SLFPNPKNGDLPFIENPSDIMTKATIFSPQLEDFGFTK--EQIALGKDKRSV-IEFIGGE 295
Query: 304 SAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE-R 362
AAL R EY ++ + Y +TRNE+LG + S++FSPW+A GS+SPRYIY +VK YE +
Sbjct: 296 DAALKRFKEYVYETQAVSHYADTRNELLGENVSSRFSPWMAHGSLSPRYIYHKVKEYESK 355
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG----PRKLEYKWSQDQKLFESWR 418
++ ST ++ E+ WRD+ RF +LKYGN++F + G Y+W+ + ++ WR
Sbjct: 356 NQLTEKSTKKLIDEVFWRDWCRFWALKYGNNIFGVYGFDYERGSKRYQWTTNPEIVRRWR 415
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
G TG PLIDA M+EL+ GFMSNRGRQI S+LV D+ DWR GA FE L+D+D S
Sbjct: 416 QGTTGMPLIDAFMRELNFGGFMSNRGRQIVASYLVLDLNQDWRFGAHHFEEKLIDHDVHS 475
Query: 479 NYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
NY +W + AG+G P + F++ KQ++++D+ GE++ W+P+L+ +P E
Sbjct: 476 NYASWNFAAGIG--PSKVLQFNVQKQSRDHDKNGEFIKTWVPELRNVPLE 523
>gi|372222172|ref|ZP_09500593.1| cryptochrome-like DNA photolyase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 441
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/443 (40%), Positives = 260/443 (58%), Gaps = 20/443 (4%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
K AI+WFRN+LR DN+ L++A + ++ VY + P + +GF K G RA+FL
Sbjct: 16 KDSAIIWFRNNLRTQDNKTLVEA-SKHKQLIAVYTISPNLFKKN-KYGFTKLGKYRAKFL 73
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+E L DL++ L ++L+ + PE+++P L K + + +Y Q+E E
Sbjct: 74 LESLRDLKEQLKTYNISLICKVALPEQLLPELIKKYKINTLYLQEEWTQE-------EED 126
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF-DHSSLPDVYTHFRKSIEAKCTV 258
L +VV K+ H Q+ +YH + IPF D++ +P+V+T+FRK +E V
Sbjct: 127 ELTEVV------KKAPEHLQIVQFKDQFLYHPNAIPFKDYAQIPEVFTNFRKKVEKYAQV 180
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQL--ELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
P++ ++ ++P + L + + F GG A R++ Y W
Sbjct: 181 NYLRATPNTLDKENLIIT-NAIPELGDLGFDEFETDLRSAFPFKGGSKKAHERLHYYLWD 239
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
+ + YKETRN +LGPDYS+K S WLA+GSIS R ++ EVK YE+ER N STYW++FE
Sbjct: 240 SNAIANYKETRNGLLGPDYSSKLSAWLANGSISAREVFWEVKKYEKERTKNQSTYWLIFE 299
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L+WRDYF++ISLK+ N +F LGG Y W++D+ W DGCT P ++ANMKEL+
Sbjct: 300 LLWRDYFKYISLKHKNKIFQLGGILNRHYDWNRDKITLNQWIDGCTKEPFVNANMKELAQ 359
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TGFMSNRGRQ S+ + + DWR GA +FE L+DYD SN+ NW Y +GVGNDPR D
Sbjct: 360 TGFMSNRGRQNVASYWAKSLLQDWRYGAAYFEEMLIDYDVHSNWCNWLYVSGVGNDPR-D 418
Query: 497 RYFSIPKQAQNYDREGEYVAYWL 519
R F+I QA YD + EY W+
Sbjct: 419 RKFNIALQADRYDPKKEYQNQWI 441
>gi|397600433|gb|EJK57652.1| hypothetical protein THAOC_22277 [Thalassiosira oceanica]
Length = 667
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 197/490 (40%), Positives = 285/490 (58%), Gaps = 56/490 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSE----MVLPVYCVDPRH----SQTTYHFGFPKTGALR 135
I WFRNDLR+ DN L D S+ +LP+Y D + G K GA R
Sbjct: 6 IHWFRNDLRLHDNPVDLSRHDLSDGEESTLLPIYIFDTSRIYGSEIKSAVSGAIKCGASR 65
Query: 136 AQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKS----FGAHA-------VYAQ 183
A+F IE + DLR +L R G+ LL+ G+PE+++ L K G A + Q
Sbjct: 66 AKFTIEAVEDLRLSLEKRLGVCLLVATGRPEDVLLELVKQNVQPRGEQAEQDTSVNLVCQ 125
Query: 184 KETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH--SSL 241
+E C EEL V++ V +L+ + S+ N + IWG+ +Y D+PF+ + +
Sbjct: 126 REICHEELEVDKAVEASLEGFI----SDGSRFNFEK---IWGSLLYEPCDLPFEGGINGI 178
Query: 242 PDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWG------SVPLIEQLELHSPKVS- 294
P + FR+ +EAKC V + PS + V G S+P + L +V
Sbjct: 179 PTTFNKFRREVEAKCEVPMPLEAPSQTELQTASVTRGRSYSATSMPTLSGLGYTDQQVES 238
Query: 295 -----------KGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWL 343
KG R GGE+ AL R ++ W +D+L+ Y +TRN ++G DYSTKFSPWL
Sbjct: 239 TRTVHPNSSLPKGYR--GGETFALHRARQWIWDRDMLRTYFDTRNGLIGEDYSTKFSPWL 296
Query: 344 ASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR-- 401
A GS+SPRY+ E + YE RVAN STYW +FEL+ RDYFR+ + ++G +F+L G
Sbjct: 297 ACGSLSPRYVALECRRYEEARVANKSTYWCVFELLVRDYFRYFAARHGRRIFYLHGTAGR 356
Query: 402 ---KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGI 458
E KW+++ +L +WR+G TG+PLIDA+M+EL TG++SNRGRQ CS+L DM +
Sbjct: 357 LEGGAERKWNRNPELIAAWREGRTGHPLIDASMRELGNTGYLSNRGRQNVCSYLSIDMSV 416
Query: 459 DWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
DWR+GAE+FE+ LLD+D CSNY NW GAG+ R +R F+I KQ++++D +GEY+ W
Sbjct: 417 DWRVGAEFFESRLLDFDVCSNYVNWINGAGLTGG-RLNR-FNITKQSRDWDEKGEYLRLW 474
Query: 519 LPQLKALPKE 528
+P+++ +P E
Sbjct: 475 VPEIRNIPNE 484
>gi|260063633|ref|YP_003196713.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
gi|88783078|gb|EAR14251.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
Length = 515
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 187/441 (42%), Positives = 253/441 (57%), Gaps = 19/441 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+ WFRNDLRV DN LL A SS+ VL V+C DP + +G + G RA FL E
Sbjct: 46 TALYWFRNDLRVTDNPGLLAA-CSSQRVLTVFCFDPADFREG-DYGIRRMGPYRAGFLRE 103
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ LR+ L ++L I G P +I+P + K +G ++ Q+E +E VR+ L
Sbjct: 104 SVLALREQLQGLNISLHIHFGPPGDILPGMIKKYGVTDLHLQREWTRDECLALDAVREGL 163
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRG 260
V T H + ++H +D+P+D +PDV+T FRK E +VR
Sbjct: 164 PPGV---------TVHEHYQQF----LFHPEDLPYDSFDDIPDVFTGFRKKCEKHVSVRS 210
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK--GMRFVGGESAALGRVNEYFWKKD 318
P+ + G +P E L + P+ F GGE AA R+ EYFW+
Sbjct: 211 PEDTPARREAVFAPAGDGGLPGWEALGMAPPRADSRSAFPFRGGEPAAWDRLQEYFWESR 270
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L YK TRN ++G YSTKFSPWLA+GS+S R IY EVK YE+E N TYW++FEL+
Sbjct: 271 FLSTYKRTRNGLVGTRYSTKFSPWLANGSLSARQIYREVKRYEQEVEKNRDTYWLVFELI 330
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRDYF+++SLK+G +F GG R++E W ++ F W G T I+ANM+EL +TG
Sbjct: 331 WRDYFKYVSLKHGPKIFAPGGIREVERDWGASREAFARWTQGETDSDFINANMQELRLTG 390
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ S+ +DMG DWR+GA WF+ LLDYD SN+GNW Y + VGNDPR +R
Sbjct: 391 WMSNRGRQNTASYWSQDMGQDWRLGAAWFQYLLLDYDVHSNWGNWMYNSAVGNDPR-NRK 449
Query: 499 FSIPKQAQNYDREGEYVAYWL 519
F+ QA YD G++ WL
Sbjct: 450 FNPEHQASRYDASGKFRRLWL 470
>gi|298208129|ref|YP_003716308.1| cryptochrome [Croceibacter atlanticus HTCC2559]
gi|83848050|gb|EAP85920.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559]
Length = 421
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 186/428 (43%), Positives = 258/428 (60%), Gaps = 17/428 (3%)
Query: 95 DNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRG 154
DN L A ++ V+ VYC DPRH TT FGF KTG RAQFLIE + +L++ L +
Sbjct: 3 DNAVLNHAVANNNPVIAVYCFDPRHFTTT-TFGFKKTGPYRAQFLIETIKNLKETLKEKN 61
Query: 155 LNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKS 214
+ L++ KPE I +L K+ AVY QKE EE VE LV+++++
Sbjct: 62 ITLVVSLTKPEHCISTLVKNHNISAVYYQKEWTQEEQEVEHLVKESIK------------ 109
Query: 215 TNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPS 273
T+ L + ++H DIPF + +P +YT FRK+ E K VR + + +
Sbjct: 110 TSEVTLHSYYDQFLFHPKDIPFSSINEIPKIYTAFRKACEKKAVVRPLVNLEINLPKTNL 169
Query: 274 VVDWGSVPLIEQLELHSPKVSKGMRF--VGGESAALGRVNEYFWKKDLLKVYKETRNEML 331
+ + ++P ++ L V F GGE+ L R+NEY W + + YKETRN M+
Sbjct: 170 LNEDYAIPKLKDFGLSEFTVHPNTAFPYKGGETEGLKRINEYHWDTNHIASYKETRNGMI 229
Query: 332 GPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYG 391
G +YS+K+S WLA+GSIS R IY ++K YE++ N STYW++FEL+WRDYF +ISLKYG
Sbjct: 230 GSEYSSKYSAWLANGSISARQIYWDIKDYEKKVKKNQSTYWMIFELIWRDYFMYISLKYG 289
Query: 392 NSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSF 451
NS+F L G +Y W++ + + W +G T Y ++ANM EL TG+MSNRGRQ S+
Sbjct: 290 NSIFKLNGILSKDYNWNKSKSALKQWINGTTPYDFVNANMIELKETGWMSNRGRQNVASY 349
Query: 452 LVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDRE 511
+++ DWR+GA +FE+ L+DYD SNYGNW Y AGVGNDPR DR F+I QA+ YD
Sbjct: 350 WAKELQQDWRIGASYFESLLIDYDVHSNYGNWMYNAGVGNDPR-DRKFNIQLQAKRYDPN 408
Query: 512 GEYVAYWL 519
EY WL
Sbjct: 409 REYRKLWL 416
>gi|336173299|ref|YP_004580437.1| DASH family cryptochrome [Lacinutrix sp. 5H-3-7-4]
gi|334727871|gb|AEH02009.1| cryptochrome, DASH family [Lacinutrix sp. 5H-3-7-4]
Length = 437
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 175/442 (39%), Positives = 257/442 (58%), Gaps = 21/442 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
++VWF+NDLR+ DN LL A + SE V+ +YC D R+ + KT RA+FLIE
Sbjct: 8 TSLVWFKNDLRINDNATLLNAVNESETVIAIYCFDNRYFKKDKFGF-KKTEKFRARFLIE 66
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ DL+ L + L + E I +L + G A+Y QKE +EE N+ LV+K L
Sbjct: 67 TITDLKFQLQALNIPLFVYCDYTENSIENLQNTHGFDALYLQKEWTTEENNILDLVKKKL 126
Query: 202 QQVVLSSQSNDKSTNHPQLKLI--WGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+P +K+ + ++H +D+ F+ SLP V+T FRK++E VR
Sbjct: 127 ---------------NPNVKIHEEYNQFLFHPEDLNFNIESLPSVFTEFRKNLEKNILVR 171
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKV--SKGMRFVGGESAALGRVNEYFWKK 317
+ + + + VP ++ L K+ F GGE+ A R+ YF+++
Sbjct: 172 TLLPTANPANSSYTFKNETRVPTLKDLGFSDFKIHNQSAFPFKGGETEAFKRLENYFFQE 231
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
L YK+TRN ++G DYS+K S WLA+GSIS + IY +VK +E N STYW++FEL
Sbjct: 232 KKLGFYKKTRNGLIGTDYSSKLSAWLANGSISAKTIYWKVKEFETLHFKNQSTYWLIFEL 291
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYF+++S K N +F +GG Y+W ++ W + T P I+ANM EL+ T
Sbjct: 292 IWRDYFKYVSKKNNNKIFKIGGILDKTYQWKDNKDAVNKWINSETNEPFINANMNELNKT 351
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQ S+ +++ +DWR+GA +FE+ L+DYD SNYGNW Y +GVGNDPR +R
Sbjct: 352 GWMSNRGRQNVASYFAKELLLDWRIGAAYFESLLIDYDVHSNYGNWMYVSGVGNDPR-NR 410
Query: 498 YFSIPKQAQNYDREGEYVAYWL 519
F+I QA+ YD G+Y + WL
Sbjct: 411 KFNIKLQAERYDANGKYQSMWL 432
>gi|413955019|gb|AFW87668.1| hypothetical protein ZEAMMB73_818499 [Zea mays]
Length = 219
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 153/195 (78%), Positives = 169/195 (86%), Gaps = 2/195 (1%)
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
VLFEL+WRDYFRF+S KYGN++FHLGGPRK+ KWSQDQ LFESWRDG TGYPLIDANM+
Sbjct: 20 VLFELIWRDYFRFLSAKYGNAIFHLGGPRKVVSKWSQDQALFESWRDGRTGYPLIDANMR 79
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
ELS TG+MSNRGRQI CSFLVRDMG+DWRMGAEWFETCLLDYDP SNYGNWTYGAGVGND
Sbjct: 80 ELSATGYMSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLLDYDPASNYGNWTYGAGVGND 139
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQN 552
PREDRYFSIPKQA++YD EGEYVAYWLP+L++L KERRNFPG SYI Q+V LK NQ
Sbjct: 140 PREDRYFSIPKQAKSYDPEGEYVAYWLPELRSLAKERRNFPGASYIRQVVPLKFDGGNQR 199
Query: 553 RNQNDSLTRTGRRNN 567
++Q R R NN
Sbjct: 200 KDQQ--FNRQRRPNN 212
>gi|383449827|ref|YP_005356548.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium indicum
GPTSA100-9]
gi|380501449|emb|CCG52491.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium indicum
GPTSA100-9]
Length = 437
Score = 328 bits (840), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 178/440 (40%), Positives = 247/440 (56%), Gaps = 19/440 (4%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+WFRN+LR D A + V+ +YC++P + T FG+ K RAQFL+E L
Sbjct: 10 IIWFRNNLRTHD-AAFWNHIQKEDEVIALYCLEPEWLKPT-SFGWKKMEVFRAQFLVETL 67
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
DL+ L ++ + + + SF + Q E EE+ VE VR
Sbjct: 68 RDLQLQLSKNNISFYFFQCQAVQAFEEIYTSFPFDTIITQNEWTQEEVEVENKVRTAFPN 127
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V L + + QL PF + LP+V+T +RK +E K V I
Sbjct: 128 VSLKTDYDQFLIEPAQL--------------PFSLNDLPNVFTSYRKKVEQKWAVNEVIP 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK--GMRFVGGESAALGRVNEYFWKKDLLK 321
+ + +VP +E+L S +V + F GGES AL + +Y W+ +K
Sbjct: 174 KANYLFKKIDLPFSSAVPTVEELGYSSLQVDERSAFPFKGGESEALQHLKKYIWEHQQIK 233
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK+TRNE++G YSTK +PWLA+GS+S R +Y EV+ +E+E + NDSTYWVLFEL+WRD
Sbjct: 234 TYKDTRNELVGIQYSTKLAPWLANGSLSVRTVYHEVRKFEQEVLENDSTYWVLFELLWRD 293
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+F+ +S+KYGN LF L G Y W +++K+ W +G T Y I+ANM EL TG+MS
Sbjct: 294 FFKCVSIKYGNQLFQLSGILNRNYNWKRNEKVIADWINGNTRYDFINANMLELKNTGWMS 353
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ S+ ++M DWR+GA +FE L+DYD SNYGNW Y AGVGNDPR DR F+I
Sbjct: 354 NRGRQNVASYFAKEMEQDWRIGASYFEAFLIDYDVHSNYGNWNYLAGVGNDPR-DRKFNI 412
Query: 502 PKQAQNYDREGEYVAYWLPQ 521
QA+NYD + WL +
Sbjct: 413 ELQAKNYDNYYVFRNLWLTK 432
>gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 610
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 192/496 (38%), Positives = 283/496 (57%), Gaps = 54/496 (10%)
Query: 71 TSKALKRNGKGVAIVWFRN-DLRVLDNEALLKAWDSSEMVLPVYCVDPR----------- 118
+KA R V + WFR+ DLR+LDN AL+ + ++E +PV+C D
Sbjct: 40 VTKATSRASSQVVLHWFRHGDLRLLDNPALIHSSKTAESCVPVFCFDDSVYGNDNRTPDT 99
Query: 119 HSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA- 177
+ + G K G RAQF+++ + DLR++L +RG L + HGKP ++ L ++ A
Sbjct: 100 RAPHSNDRGQLKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRLVDAWPAV 159
Query: 178 ------------HAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKL--I 223
+ Q+E EE + R V+ L++ PQ K+ I
Sbjct: 160 PAADTAAPNGSLLTIVCQREVVREENDAVRAVQSVLRR------------RFPQAKVQQI 207
Query: 224 WGTTMYHLDDIPF--DHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPP---PSVVDWG 278
WG+TMY LDD+PF D +++PD +T FR +E C + + +P P PS + G
Sbjct: 208 WGSTMYELDDLPFATDLANMPDTFTPFRNKVEKNCQIGTPLPVPKQLSLPENFPSALKQG 267
Query: 279 --SVPLIEQLELHSPKVSKGMRFVGGESAALG-RVNEYFWKKDLLKVYKETRNEMLGPDY 335
+P +++L ++ + E L V + D LK Y ETRN MLGP+Y
Sbjct: 268 LEYLPTLKELGYTDAQIQQVE--THDERGVLHFMVAKQPDSHDCLKDYFETRNGMLGPNY 325
Query: 336 STKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLF 395
STKFSPWLA G++SPRY+ + + YE ERV N STYWV+FEL+WRD+ +F + K+G+++F
Sbjct: 326 STKFSPWLAHGNVSPRYVAAQCRKYEEERVENKSTYWVVFELLWRDFCKFFATKHGDAIF 385
Query: 396 HLGGP--RKLEYK-WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFL 452
+ G R +K WS + ++W++G TGYPL+DANM+EL TGFMSNRGRQ SFL
Sbjct: 386 YPYGTTERTDRHKPWSTFGRNLQAWQEGRTGYPLVDANMRELVATGFMSNRGRQNVASFL 445
Query: 453 VRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREG 512
++ DWR G ++FE+ LLDYD SN+ NW AG+ R +R F+I KQ+++YD+ G
Sbjct: 446 AINLNHDWRCGGDFFESHLLDYDVYSNWVNWCAAAGMTGG-RLNR-FNISKQSKDYDQHG 503
Query: 513 EYVAYWLPQLKALPKE 528
+YV +WLP+L +P E
Sbjct: 504 DYVRHWLPELAKVPNE 519
>gi|325105098|ref|YP_004274752.1| DASH family cryptochrome [Pedobacter saltans DSM 12145]
gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
Length = 433
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 175/442 (39%), Positives = 260/442 (58%), Gaps = 22/442 (4%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ DNE L++A S ++PVY DPR+ T +G KTG LRAQF+I+ +
Sbjct: 7 LVWFRNDLRIHDNEILIEATLKSTEIVPVYIFDPRYYTDT-SYGTKKTGKLRAQFIIDSV 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
DL+K+L G +LL+ GKPEE++P L K + VY +E SEE ++ V L +
Sbjct: 66 TDLKKSLKALGGDLLVVKGKPEEVLPQLIKEYHVDEVYHHREVASEETDISSAVEDALWK 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
SQ N LK G T+YH +D+PF +PD++ FRK +E + +R
Sbjct: 126 ----SQVN--------LKHFIGHTLYHKEDLPFPIKDIPDLFAKFRKKVEREGEIRDPFE 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELH-SPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
P P S+ VP +E L S ++ ++ GGES+ L R+NEY W+KDLLK
Sbjct: 174 TPGQISVPDSLAS-SEVPALEDLGFERSEQLDASIK--GGESSGLNRLNEYLWEKDLLKE 230
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YK RN + G + +++ SPWL+ G ISPR +Y E+K YE E+ D+ + EL++RD+
Sbjct: 231 YKAKRNLLTGFNNNSQLSPWLSLGCISPRKVYWELKRYEHEKGGTDNINLLFNELLFRDF 290
Query: 383 FRFISLKYGNSLF-HLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
FRF+ K+ + F + P L ++ Q LFE W++G TG L+DANM EL G M+
Sbjct: 291 FRFMFKKHSTAYFVDIAQPMSLN---AEQQVLFEKWKNGETGIDLVDANMLELKHRGTMA 347
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFS 500
+GRQ ++L+ ++ + W GA +FE L+DY SN+GNW AG+G +E + F+
Sbjct: 348 YKGRQTVAAYLISELELPWFYGAAYFEEMLIDYATASNWGNWALFAGIGTPQKEVNPAFN 407
Query: 501 IPKQAQNYDREGEYVAYWLPQL 522
+ KQ ++ D +G+Y+ WL +L
Sbjct: 408 LDKQIKDSDPKGDYIKVWLSEL 429
>gi|448747406|ref|ZP_21729066.1| Cryptochrome, DASH [Halomonas titanicae BH1]
gi|445565098|gb|ELY21211.1| Cryptochrome, DASH [Halomonas titanicae BH1]
Length = 481
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 178/449 (39%), Positives = 256/449 (57%), Gaps = 26/449 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHF-GFPKTGALRAQFLI 140
+ IVW ++DLR+ DN LL ++ +Y +D R + P+ G R +FL
Sbjct: 5 IDIVWLQDDLRIADN-PLLHFASPPSYLMCIYVLDERWFLPLFDGESTPRIGPARLRFLW 63
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ L +LR L+ RG +LL+R GKP +++ LA A V EE + V +
Sbjct: 64 QSLMELRGELLKRGSDLLVRIGKPSDVVIELASKLNAREVRVADHAGVEEFAHIQAVEQG 123
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L + L I + L +PF+ +LP ++ FR+S+E++C V
Sbjct: 124 L-------------PSQTALNCIESGRLIDLKALPFEREALPGSFSAFRRSVESECAVPA 170
Query: 261 CIRIPSSFGPPPSVVDWGSVPL---IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
P + P P G PL EQ P +G + GGESAA GR+ +Y W++
Sbjct: 171 SRCAPITLPPWPEAAR-GFPPLKAVCEQSATWQPDPRQGYAYRGGESAAHGRLKDYLWRQ 229
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ YK+TRN +LG ++ST+ SPWLA G +S R + E VK++E E +N+S+YW+ FEL
Sbjct: 230 QGGETYKKTRNGLLGANFSTRVSPWLARGCLSARQVDEAVKAWEAENGSNESSYWISFEL 289
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR+YF + G +F G R+ + Q F++WR+G TG P +DA M EL T
Sbjct: 290 LWREYFIRAAQLEGAKMF---GSRQTD----QPCAAFDAWRNGTTGLPFVDAAMLELRHT 342
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G++SNR RQ SFLV+D+ +DWR+GA WFE CL+DYD SN+GNW Y AGVG DPR+DR
Sbjct: 343 GWLSNRARQNVASFLVKDLKVDWRLGALWFEHCLIDYDVASNWGNWRYIAGVGRDPRQDR 402
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALP 526
YF++ KQA +YD +G YVA+WL QL+ LP
Sbjct: 403 YFNVLKQAGHYDPQGLYVAHWLEQLETLP 431
>gi|328857597|gb|EGG06713.1| hypothetical protein MELLADRAFT_48359 [Melampsora larici-populina
98AG31]
Length = 579
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 206/548 (37%), Positives = 277/548 (50%), Gaps = 103/548 (18%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSE-------------MVLPVYCVDPRHSQT--- 122
K V I FRNDLRV DN + A SS+ LP+Y D R +
Sbjct: 2 AKSVTIALFRNDLRVHDNPIIFHAHSSSQKGVDKTRVQRPSDYYLPIYVFDERMVELSGL 61
Query: 123 -----------TYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSL 171
T GF +TG R +FL E + +L+ L RG +L+IR G E++ S+
Sbjct: 62 PGYQREGSEARTGVCGFWRTGCHRLKFLCESVYELQHQLKQRGSDLVIRFGSIEKVTLSI 121
Query: 172 AKSF-----GAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGT 226
++ + KE SEE+ E + + L+ +S L
Sbjct: 122 IQALQDTDVKVDQILINKEYASEEIETEVKIDEALKSFKISVP----------LLFFHTR 171
Query: 227 TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC---IRIPSSF-GPPP---------- 272
++ H +D+PF S PDVYT FRK IE+ + C + P G PP
Sbjct: 172 SLVHPEDLPFLPSKTPDVYTPFRKHIESLPEQKLCRPLLPCPDRLIGMPPLKEIAPQRGN 231
Query: 273 -----------SVVDWGSVPLIEQLELHSPKVSK----------GMRFVGGESAALGRVN 311
++++ PL++ +L P K + GGES L R+N
Sbjct: 232 SGSSYDTMKMDNILESLMKPLLQCPDLACPAFPKLSSYNFDDRSAFPYKGGESEGLRRIN 291
Query: 312 EYFWKKDLLKV--YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+YF+ + V YK+TRN +LG YSTKFSP+LA G +SPR I E++ +E++ AN
Sbjct: 292 DYFYTGNPAPVRSYKDTRNGLLGQSYSTKFSPFLAHGCLSPRKIILELREHEKKFGANKD 351
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGG------PRKLEYK---WSQDQKL------- 413
TYWVLFEL+WRDYF FI+ KYG +LF LGG P+ K W Q L
Sbjct: 352 TYWVLFELLWRDYFVFITQKYGTALFKLGGFEGVLNPKAASQKIHQWKPFQNLKMNQNQQ 411
Query: 414 --------FESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAE 465
W TG P +DANM EL +TGFMSNRGRQ SFL +D+ +DWR+GAE
Sbjct: 412 GSRAINQAASRWLKAETGIPFLDANMAELRLTGFMSNRGRQNVASFLTKDLYVDWRIGAE 471
Query: 466 WFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+FE+ LLDYDP SNYGNW Y AGVGNDPR R F+ KQA++YD +GEYV WLP+L +
Sbjct: 472 FFESQLLDYDPSSNYGNWQYVAGVGNDPRASRQFNPIKQAKDYDAKGEYVRCWLPELAKV 531
Query: 526 PKERRNFP 533
P++ + P
Sbjct: 532 PQKSIHNP 539
>gi|352105175|ref|ZP_08960731.1| deoxyribodipyrimidine photolyase [Halomonas sp. HAL1]
gi|350598555|gb|EHA14670.1| deoxyribodipyrimidine photolyase [Halomonas sp. HAL1]
Length = 481
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 179/463 (38%), Positives = 257/463 (55%), Gaps = 43/463 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRH-SQTTYHFGFPKTGALRAQFLI 140
+ IVW ++DLR+ DN L +L ++ VD + + P+ G R +FL
Sbjct: 5 IDIVWLQDDLRIADN-PLFHFTARPSYLLCLFVVDEQWLAPLIEGESTPRIGPARLRFLW 63
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ L +LR L+ RG +LL+R GKP ++ LA S A V + +E +
Sbjct: 64 QSLMELRGELLQRGSDLLVRIGKPSNVVIELAASLNARQVRVAEHPGVDE-------NTH 116
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+Q VV S S T +L + +PF+ ++LP+ ++ FR+S+E CTV
Sbjct: 117 IQAVVESLPSETTVTCMESGRL------FERHALPFEQAALPNSFSAFRRSVEQACTV-- 168
Query: 261 CIRIPSSFGPPPSVVDWGSVP--------LIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
P S P ++ W P + EQ P +G + GGESAA R+N+
Sbjct: 169 ----PESRCAPVTLPPWPEAPRGFPPLKAVCEQSATWQPDSRQGYVYRGGESAAHTRLND 224
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
Y W++ + YKETRN +LG ++ST+ SPWLA G +S R +Y VK++E E + +S+YW
Sbjct: 225 YIWRQQGAETYKETRNGLLGANFSTRVSPWLARGCLSARQVYAAVKAWEAEHGSTESSYW 284
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
+ FEL+WR+YF ++ G +F P KL F++WR+ TG P +DA M
Sbjct: 285 ITFELLWREYFIRVAELEGAKMFGSRQPAKL-------CATFDAWRNAATGLPFVDAAML 337
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TG++SNR RQ SFLV+D+ +DWR+GA WFE CL+DYD SN+GNW Y AGVG D
Sbjct: 338 ELRHTGWLSNRARQNVASFLVKDLKVDWRLGALWFEHCLVDYDVASNWGNWRYIAGVGRD 397
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGG 535
PR+DRYF++ KQA +YD +G YVA+WL L NFP G
Sbjct: 398 PRQDRYFNVLKQAGHYDPQGLYVAHWLKPLA-------NFPPG 433
>gi|331227925|ref|XP_003326630.1| hypothetical protein PGTG_07608 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305620|gb|EFP82211.1| hypothetical protein PGTG_07608 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 596
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 209/553 (37%), Positives = 286/553 (51%), Gaps = 109/553 (19%)
Query: 80 KGVAIVWFRNDLRVLDNE-------ALLKAWDS------SEMVLPVYCVDPRHSQT---- 122
+ + I FRNDLR+ DN A +K D+ SE VLP+Y D R +
Sbjct: 6 RSLTIALFRNDLRLHDNPILTHSHLATVKEGDAVRRNKVSEYVLPLYVFDERQIELSGLE 65
Query: 123 ----------TYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPE----EII 168
T GF +TG+ R FL + + +L+ L G +LL+R G E +II
Sbjct: 66 GYRQHGGPARTEVCGFWRTGSHRLNFLCQSVYELKHQLKKSGSDLLVRFGVVEATTLKII 125
Query: 169 PSLAKS-FGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTT 227
L ++ F VY KE EE+ E+ + K L ++ + L L +
Sbjct: 126 EELQRNGFSVDHVYMAKEVAFEEVGTEKRLAKLLGELA----------HKVPLTLFHSRS 175
Query: 228 MYHLDDIPFDHSSLPDVYTHFRKSIE---AKCTVRGCIRIPSSFGPPPSVVDW------- 277
+ H DD+PF + PDVYT FR +E A R + +P P P++ +
Sbjct: 176 LVHPDDLPFTINKTPDVYTPFRSKVESLPADQLCRPLLPLPEKLQPFPALPETILKAAPE 235
Query: 278 ----GSV---------------PLIEQLEL-HSPKVS----------KGMRFVGGESAAL 307
GS+ PL+ ++ H PK + + GGES AL
Sbjct: 236 PGYSGSLCEGQGFDEVFARLVKPLLSNPDIPHDPKEANTQDYKPDPRSAFPYQGGESEAL 295
Query: 308 GRVNEYFWKKDL--LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV 365
R+++YF+K + ++ YK TRN +LG YSTKFSP+LA G ISPR I + +E +
Sbjct: 296 RRLDDYFFKGNQPPVRSYKTTRNGLLGHQYSTKFSPFLAFGCISPRKIIHSLWDHEAKFG 355
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHL----------GGPRKLEY-KWSQDQKLF 414
+N TYWVLFE++WRDYF FIS K+G LF + G +KL Y K +D+K+
Sbjct: 356 SNKDTYWVLFEILWRDYFIFISQKFGRRLFLIKGFEGRIDPKGATKKLSYWKPFKDEKMN 415
Query: 415 E--------------SWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDW 460
+ +W G TG P IDANM EL +GFMSNRGRQ SFL +D+ +DW
Sbjct: 416 QQSKGKETPVDRNALAWLRGKTGVPFIDANMIELRESGFMSNRGRQNVASFLAKDLELDW 475
Query: 461 RMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLP 520
R+GAEWFE+ LLDYDPCSNYGNW Y AGVGNDPR R F+ KQA++YD +G+YV +W+P
Sbjct: 476 RIGAEWFESALLDYDPCSNYGNWQYVAGVGNDPRTSRQFNPIKQAKDYDSQGDYVKHWIP 535
Query: 521 QLKALPKERRNFP 533
LK+ P R P
Sbjct: 536 DLKSFPTNRIQSP 548
>gi|323454932|gb|EGB10801.1| hypothetical protein AURANDRAFT_77923 [Aureococcus anophagefferens]
Length = 526
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 189/469 (40%), Positives = 264/469 (56%), Gaps = 37/469 (7%)
Query: 74 ALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPR---HSQTTYHFGFPK 130
AL K IVW R++LRV DN L +A VLPVY +D R + T+ G K
Sbjct: 3 ALAATAKPTTIVWLRDELRVHDNALLAEAAARGGPVLPVYVLDDRVFDAAATSESGGSRK 62
Query: 131 TGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-VYAQKETCSE 189
GA RA+F +E L DLR L RG L++ G+P +++ L + G A V CSE
Sbjct: 63 CGAKRARFTLEALDDLRATLGARGSGLVVERGRPADVLAGLCAAVGGDATVLCSDAACSE 122
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
E E V K L +W T+YH +D+ + D++T +R
Sbjct: 123 ERKDEAAVAKVAP-----------------LAKVWEGTLYHPEDL--RGVAFHDLFTAWR 163
Query: 250 KSIEAKCT-VRGCIRIPSSFGP-PPSVVDW---GSVPLIEQLELHSPKVS---KGMRFV- 300
+E T VRG + ++ P PP+ VD +P ++ L + + +G F
Sbjct: 164 TKVEKAGTRVRGDVFPKAATLPAPPAGVDAKLAAPLPTLDALGYDAADAACDGRGDFFAP 223
Query: 301 -GGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
GGE+AAL R+ +Y +++D LK Y TR+ M+G YSTK +PWL+ G +SPR +
Sbjct: 224 AGGETAALARLRKYVFEEDRLKDYFNTRDGMIGQGYSTKLAPWLSRGCVSPRAVARACAD 283
Query: 360 YERER-VANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL-EYKWSQDQKLFESW 417
YER R + N STYWV+FEL WRDYF F + KYG+ LF G + + E W D + W
Sbjct: 284 YERTRGIKNKSTYWVVFELTWRDYFVFYAQKYGSKLFRPYGVKDIRERTWRADPEALRRW 343
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
+ G TG PL+DANM+EL+ TGFMSNRGRQ S+LV D+G+DWR+GAE FE L+DY P
Sbjct: 344 KAGETGAPLVDANMRELAATGFMSNRGRQNVASYLVLDLGLDWRLGAEHFEEHLVDYTPE 403
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+N+GNW AG+ R +R F+I KQ+++YD +G+YV W+P+L +P
Sbjct: 404 ANWGNWHAAAGLSGG-RVNR-FNILKQSKDYDPKGDYVKLWIPELAKVP 450
>gi|359785167|ref|ZP_09288322.1| deoxyribodipyrimidine photolyase [Halomonas sp. GFAJ-1]
gi|359297465|gb|EHK61698.1| deoxyribodipyrimidine photolyase [Halomonas sp. GFAJ-1]
Length = 483
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 177/449 (39%), Positives = 255/449 (56%), Gaps = 26/449 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHF-GFPKTGALRAQFLI 140
+ IVW +++LRV DN LL+ E +L +Y +D Q P+ G R +FL
Sbjct: 5 IDIVWLQDNLRVADN-PLLQFDSPPEQLLCLYVLDQNWLQPCVAGEPTPRLGPARLRFLW 63
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ L +LR L+ RG +LL+R G P E++ LA S A V + SEE+ V +
Sbjct: 64 QSLMELRGELLQRGSDLLVRIGDPAEVVVQLATSLNARQVRTAAHSGSEEVAHIAKVSQQ 123
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L + QL + + D +PF LP ++ FR+S+E +C +
Sbjct: 124 LPASI-------------QLACVDSGYLISADTLPFAAELLPANFSAFRRSVEKQCVIAP 170
Query: 261 CIRIPSSFGPPPSVVDWGSVPL---IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+ P + P G PL + + P +G F+GGE+AA+ R+ Y W++
Sbjct: 171 PMHAPVTLPSWPDAPR-GFPPLKSVCQDSDAWQPDDRQGFTFIGGEAAAVDRLKNYLWQQ 229
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ YK+TRN +LG +ST+ SPWLA G +S R +++EVK++E + +S+YW++FEL
Sbjct: 230 KGGESYKKTRNGLLGASFSTRLSPWLARGCLSARQVHQEVKAWEEVNGSTESSYWIIFEL 289
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYF + G LF G +L + + F +WR+ TG P IDA M EL T
Sbjct: 290 LWRDYFHRAAQLEGRLLF---GREEL----PEPTEAFNAWRNASTGVPFIDAAMLELYRT 342
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G++SNR RQ SFLV+D+ +DWR+GA WFE CL+DYD SN+GNW Y AGVG DPR+DR
Sbjct: 343 GWISNRSRQNVASFLVKDLEVDWRLGAWWFEHCLIDYDVASNWGNWRYIAGVGRDPRQDR 402
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALP 526
YF++ KQA +YD +G YVAYWLP L +LP
Sbjct: 403 YFNVLKQAGHYDPKGLYVAYWLPALASLP 431
>gi|338996753|ref|ZP_08635463.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
gi|338766394|gb|EGP21316.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
Length = 473
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 178/447 (39%), Positives = 253/447 (56%), Gaps = 25/447 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPR-HSQTTYHFGFPKTGALRAQFLIEC 142
IVW +++LR+ DN LL E +L +Y +D R ++ P+ G R +FL +
Sbjct: 7 IVWLQDNLRIADN-PLLHFDAPPEQLLCLYVLDQRWFEPSSAGDDTPRLGPARLRFLWQS 65
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +LR L+ RG +LL+R G P I+ A A V + EE + + + +
Sbjct: 66 LMELRGELLQRGSDLLVRIGDPASIVLETADMLSAREVRVAAHSGYEE---SQHIARVAE 122
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q+ + Q + + + DD+PF S LP ++ FR+ +E C
Sbjct: 123 QLPPACQFFCADSGY----------LIAADDLPFALSELPPNFSAFRRRVEKHCEFLAPQ 172
Query: 263 RIPSSFGPPPSVVDWGSVPL---IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
P + P P G PL E+ + P +G FVGGESAA R+ +Y W+++
Sbjct: 173 PAPITLPPWPESAPRGFPPLKAVCEESAVWQPDNRQGFVFVGGESAASDRLQQYLWRQNG 232
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
+ YK+TRN +LG ++ST+FSPWLA G +S R +EVK++E + +S+YW++FEL+W
Sbjct: 233 AESYKKTRNGLLGANFSTRFSPWLARGCLSARQACQEVKNWEAVHGSCESSYWIIFELLW 292
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYF + G LF G L F +WR+ TG P IDA M EL TG+
Sbjct: 293 RDYFHRAAQLEGAVLF---GREAL----PPANNAFNAWRNATTGVPFIDAAMLELKHTGW 345
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
+SNR RQ SFLV+D+ +DWR+GA WFE CL+DYD SN+GNW Y AGVG DPR+DRYF
Sbjct: 346 ISNRARQNVASFLVKDLNVDWRLGARWFEHCLIDYDVASNWGNWRYIAGVGRDPRQDRYF 405
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALP 526
++ KQA +YD +G YVAYWLP+L+ALP
Sbjct: 406 NVLKQAGHYDPQGLYVAYWLPELEALP 432
>gi|340505125|gb|EGR31487.1| hypothetical protein IMG5_108280 [Ichthyophthirius multifiliis]
Length = 1077
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 136/223 (60%), Positives = 178/223 (79%)
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
+ RV +Y W++DLLK YK TRN M+G DYS+KFS WLA+G ISPRYIY+EVK YE+ER+
Sbjct: 1 MNRVQQYIWEQDLLKNYKNTRNGMVGADYSSKFSIWLANGCISPRYIYQEVKKYEKERIK 60
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
NDSTYW++FEL+WRDYF+F+++KY N LF+ G + L+ W+Q+ FE W++G TGYPL
Sbjct: 61 NDSTYWIIFELLWRDYFKFVAIKYKNKLFYKNGIQGLDINWNQEINYFELWKNGKTGYPL 120
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DANM+EL+ TGFMSNRGRQ SFL ++M +DWRMGAE+FE+ LLDYDP SNYGNW Y
Sbjct: 121 VDANMRELNSTGFMSNRGRQNVASFLNKNMWVDWRMGAEYFESILLDYDPESNYGNWQYS 180
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKER 529
AG+GND R+ R F+I KQ+ +YD EG Y+ W+P+LK +PK +
Sbjct: 181 AGIGNDGRQFRVFNITKQSNDYDPEGIYIKLWIPELKNVPKNK 223
>gi|412990437|emb|CCO19755.1| predicted protein [Bathycoccus prasinos]
Length = 558
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 197/505 (39%), Positives = 279/505 (55%), Gaps = 80/505 (15%)
Query: 76 KRNGKGVAIVWFRNDLRVLDN----EALLKAWDSSEM--VLPVYCVDPRHSQTTYHF--- 126
K K I+W RNDLRV DN EAL +SSE+ ++P Y DPR + F
Sbjct: 12 KTKKKKRVILWHRNDLRVHDNLTLKEALTFCSESSELCELVPTYIFDPRWFLSDDAFDRS 71
Query: 127 ----------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG 176
PK RA+FL+E + DL++ G +LLI+ GK E ++ +L
Sbjct: 72 DQKRREKSLTNAPKCSQRRAEFLLESVLDLKERYKRLGSDLLIKIGKSENVLDAL----D 127
Query: 177 AHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF 236
A V +E C +E +ER V++ + +LKL+W T+YH +D+ F
Sbjct: 128 ADVVVCSREVCEDERALERKVKRKAKG---------------ELKLVWDNTLYHYEDV-F 171
Query: 237 DH--------SSLPDVYTHFRKSIEAKCTVRGCIRIPSS-------FGPPPSVVD--WGS 279
+ + LP +T F+ +E+K +VR I + F P +V +
Sbjct: 172 ESGNCYQNGLNDLPTQFTQFKNKVESKVSVRKPILNDAELSDGLKKFSSPSNVSEEEMQF 231
Query: 280 VPLIEQL-------ELHS--PK---VSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETR 327
VP IE + ++H+ PK ++ F GGES AL RV Y ++ D + Y +TR
Sbjct: 232 VPTIEDIPLSDDARQMHAAIPKDNSITPVYSFKGGESEALKRVQRYLYETDAVATYFDTR 291
Query: 328 NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFIS 387
N ML STK +P+LA G ISPR+I E++ YE+ERV N STYWV+FEL WRD++RF +
Sbjct: 292 NGMLEDLESTKLAPYLALGCISPRFIENEIRKYEKERVENKSTYWVIFELTWRDFYRFFA 351
Query: 388 LKYGNSLFHLGG--------PRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
L++G +F L G P E++ +D+ +FE W G TGYPLIDANM+EL +TG+
Sbjct: 352 LRHGAKIFKLDGIGSNGKMPPWTAEHE-GRDE-IFEKWISGTTGYPLIDANMRELKLTGW 409
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ S+L D IDWRMGAEWFE LLDYDP SN+GNW AG+ R ++ F
Sbjct: 410 MSNRGRQNVASWLALDARIDWRMGAEWFEFLLLDYDPASNWGNWVAAAGLTRG-RVNK-F 467
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKA 524
+IPKQ ++YD + +Y ++P+L +
Sbjct: 468 NIPKQTKDYDPQMKYCRKFIPELDS 492
>gi|388854790|emb|CCF51683.1| related to Deoxyribodipyrimidine photolyase [Ustilago hordei]
Length = 599
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 201/547 (36%), Positives = 270/547 (49%), Gaps = 105/547 (19%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSS----------EMVLPVYCVDPRHSQ-------- 121
+ + I RNDLR+ D+ L D + VLPVY D RH +
Sbjct: 3 RNILIALLRNDLRLHDHPILHLCSDPTPSNAQFQQPVTHVLPVYVFDQRHIELSGFPSLI 62
Query: 122 ---------------TTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEE 166
T G +TG R + + + L DL+++L + G +L I G PE
Sbjct: 63 KADRASGGKGSTQFAKTRQLGLWRTGVHRTKLINQSLFDLKQSLRSIGSDLSIFAGTPEA 122
Query: 167 IIPSLAKSF-----GAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLK 221
++P L K AVY +E +EE++V++ + L Q+ +K
Sbjct: 123 VVPGLIKGIRDSGDTVEAVYLGREVNTEEVDVQKRLDTLLGQLQCP------------IK 170
Query: 222 LIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPP---SVVDWG 278
L G ++ H D+PF LPDV+THFRK +E R ++ PS P P S+ D
Sbjct: 171 LFEGKSLIHSTDLPFPVEQLPDVFTHFRKQVERPDMFREPVQAPSKLKPFPKDVSIPDSA 230
Query: 279 SV-----------------PLIEQLEL-HSPKVSK--------------GMRFVGGESAA 306
V PLIEQ L H+ +SK + GGE+ A
Sbjct: 231 GVFSLSTKKEEEVEKHLLKPLIEQPALAHNELLSKVFNQSTGQVNVAHSAFPYKGGETEA 290
Query: 307 LGRVNEYF--WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERER 364
L +++ YF K+ YKETRN+MLG YSTKF+ LA G +SPR I ++ ++
Sbjct: 291 LKQLDYYFAGGKRSPGASYKETRNQMLGAGYSTKFAAALAHGLLSPRLIAQKASELDQAT 350
Query: 365 V---ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG---------PRKLEYKWSQDQK 412
A YW++FEL+WRDYF F+ K+G LF LGG R Y W
Sbjct: 351 GTANAKGGGYWIIFELLWRDYFYFVGCKFGWHLFTLGGIEEVLSPERARSKAYDWKHSNS 410
Query: 413 L------FESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEW 466
L F W TG P+IDANM EL TGFMSNRGRQ SFL +D+G +WR GAE+
Sbjct: 411 LSDQKDPFVRWATAKTGVPMIDANMIELVQTGFMSNRGRQNVASFLTKDLGWNWRYGAEF 470
Query: 467 FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
FET L+DYDP SN+GNW Y AGVGNDPR R F+ KQ ++YD GEYVA W+ QLK +
Sbjct: 471 FETWLVDYDPNSNWGNWQYVAGVGNDPRSSRQFNPIKQGKDYDNRGEYVATWITQLKLVG 530
Query: 527 KERRNFP 533
++ R+ P
Sbjct: 531 EQFRHHP 537
>gi|359395694|ref|ZP_09188746.1| hypothetical protein KUC_2354 [Halomonas boliviensis LC1]
gi|357969959|gb|EHJ92406.1| hypothetical protein KUC_2354 [Halomonas boliviensis LC1]
Length = 481
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 174/454 (38%), Positives = 254/454 (55%), Gaps = 36/454 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHF-GFPKTGALRAQFLI 140
+ IVW ++DLR+ DN LL S +L +Y VD + + P+ G R +FL
Sbjct: 5 IDIVWLQDDLRIADN-PLLHFVSSPCYLLCLYVVDEQWFSPLFDGESTPRIGPARLRFLW 63
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ L +LR L+ RG +LL+R GKP +++ LA + A V EE + V +
Sbjct: 64 QSLMELRGELLRRGSDLLVRIGKPSDVVIELASTLNARQVRVADHAGVEESAHIQAVEQG 123
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L +H + + +PF+ +LP ++ FR+ +E CTV
Sbjct: 124 L-------------PSHTAFDCLESGRLIDRQALPFEREALPASFSAFRRRVEGVCTV-- 168
Query: 261 CIRIPSSFGPPPSVVDWGSVP--------LIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
P S P ++ W P + EQ P +G + GGESAA GR+ +
Sbjct: 169 ----PVSRCAPVTLPPWPEAPRGFPPLKAVCEQSANWQPDPRQGYAYWGGESAAHGRLKD 224
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
Y W + + YK+TRN +LG ++ST+ SPWLA G +S R + + VK++E E +N+S+YW
Sbjct: 225 YLWDQQGGETYKKTRNGLLGANFSTRVSPWLARGCLSARQVNDAVKAWEAENGSNESSYW 284
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
+ FEL+WR+YF + +LF G R+ + + F++WR+G TG P +DA M
Sbjct: 285 ITFELLWREYFIRAAQLEEETLF---GSRQTD----KPCAAFDAWRNGDTGLPFVDAAML 337
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TG++SNR RQ SFLV+D+ +DWR+GA WFE CL+DYD SN+GNW Y AGVG D
Sbjct: 338 ELRHTGWLSNRARQNVASFLVKDLKVDWRLGALWFEHCLIDYDVASNWGNWRYIAGVGRD 397
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
PR+DRYF++ KQA +YD +G YVA+WL L+ LP
Sbjct: 398 PRQDRYFNVLKQAGHYDPQGLYVAHWLKPLEKLP 431
>gi|345867345|ref|ZP_08819359.1| cryptochrome DASH [Bizionia argentinensis JUB59]
gi|344048275|gb|EGV43885.1| cryptochrome DASH [Bizionia argentinensis JUB59]
Length = 412
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/423 (38%), Positives = 245/423 (57%), Gaps = 19/423 (4%)
Query: 99 LLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLL 158
+++A ++V+ +YC +P+ + T FGF KT RA+F IE + DL+ L + L
Sbjct: 1 MVEALRLKKLVIAIYCFNPQDYENT-SFGFKKTEKFRARFTIESVHDLKIQLETLNIPLF 59
Query: 159 IRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHP 218
H KPE I SL + + V+ QKE EE N+ V+ + +SQ+++ +
Sbjct: 60 TVHEKPELAISSLCEKYHITDVFVQKEFTQEETNIIDAVK------LKTSQNSNWHEVYD 113
Query: 219 QLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWG 278
Q ++ DD + +P V+T+FRK +E +C+VR I + +
Sbjct: 114 QF-------LFQPDDGLRQLNKIPKVFTNFRKILEKECSVRPLITPEKQ--ELFEIKNNT 164
Query: 279 SVPLIEQLEL--HSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYS 336
+P ++ L F GGE+AA R+ Y ++ + YK+TRN +LG DYS
Sbjct: 165 EIPTLKTLGFSEFETHAHSAFPFSGGETAAQNRLYNYVFETKKIGFYKKTRNGLLGVDYS 224
Query: 337 TKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFH 396
+KFS WLA+G IS R IY ++ +E+E N STYW++FEL+WRD+F++I+ ++GN++FH
Sbjct: 225 SKFSAWLANGCISARQIYWAIQDFEKEHFKNQSTYWLIFELIWRDFFKYIAWQHGNAIFH 284
Query: 397 LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDM 456
L G Y+W D +L + W G T P I+ANM EL+ TG+MSNRGRQ S+ + +
Sbjct: 285 LEGINNHTYQWKTDPELIQKWCSGNTSEPFINANMIELNKTGWMSNRGRQNVASYFAKTL 344
Query: 457 GIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVA 516
IDWR+GA +FE+ L+DYD SNYGNW Y AGVGNDPR R F++ QA YD +G++
Sbjct: 345 EIDWRIGAAYFESLLIDYDVHSNYGNWLYVAGVGNDPR-SRTFNVKLQADRYDSQGKFQK 403
Query: 517 YWL 519
WL
Sbjct: 404 RWL 406
>gi|343427433|emb|CBQ70960.1| related to Deoxyribodipyrimidine photolyase [Sporisorium reilianum
SRZ2]
Length = 596
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 208/546 (38%), Positives = 272/546 (49%), Gaps = 106/546 (19%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEM----------VLPVYCVDPRHSQT------- 122
+ + I RNDLR+ D+ L D S VLPVY D RH +
Sbjct: 3 RNILIAVLRNDLRLHDHPILHLCSDPSPASTPFKQPITHVLPVYVWDQRHVEISGFPSLT 62
Query: 123 ----------------TYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEE 166
T G +TG RA+F+ E + DLR L G +L + G PE
Sbjct: 63 KATSSGGGGGATQLAKTRALGLWRTGVHRARFVNESVFDLRARLRGVGSDLAMYAGTPES 122
Query: 167 IIPSLAKSFGA-----HAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLK 221
++P+L A AVY +E +EE+NV+R ++ L+ + + Q+K
Sbjct: 123 VVPALIHKIRAGGDSVEAVYLGREINTEEVNVQRRLQGVLEGMGV------------QMK 170
Query: 222 LIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSV-VDWG-- 278
++ G ++ H D+ F S LPDV+THFRK +E R + PS P P V VD
Sbjct: 171 MLEGKSLIHSRDLGFAVSQLPDVFTHFRKQVEGDDMFRAPLPAPSRLKPFPRVDVDDAEG 230
Query: 279 -------------------------SVPLIEQLELHSPKVSKG---------MRFVGGES 304
+ P++ EL S KV KG + GGE+
Sbjct: 231 VYALSAAKGLDTKDAVEKCLLQPLLAHPVLGHKELLS-KVLKGNTPEVPHSAFPYKGGET 289
Query: 305 AALGRVNEYF--WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE- 361
AL R+ YF K YKETRN+MLG DYSTKF+ LA G +SPR I ++ +
Sbjct: 290 EALARLEHYFTGAKSSPGASYKETRNQMLGADYSTKFAAALAHGLLSPRLIAQKATELDA 349
Query: 362 RERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG------PRKLE---YKW---SQ 409
YW+LFEL+WRDYF F+ K+G+ LF LGG PR Y W S
Sbjct: 350 TTGTTKGGGYWILFELLWRDYFYFVGWKFGSHLFTLGGIEEQLSPRSAASKAYDWKSTSL 409
Query: 410 DQKL--FESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWF 467
D K F W TG PLIDANM EL +TGFMSNRGRQ SFL +D+G +W+ GAE F
Sbjct: 410 DDKAGPFVRWATAQTGVPLIDANMTEL-VTGFMSNRGRQNVASFLTKDLGCNWQYGAELF 468
Query: 468 ETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
E+ L+DYDP SN+GNW Y AGVGNDPR R F+ KQ ++YD GEYVA W+P K +P+
Sbjct: 469 ESWLVDYDPNSNWGNWQYVAGVGNDPRSSRQFNPIKQGKDYDARGEYVATWIPGFKEVPE 528
Query: 528 ERRNFP 533
R+ P
Sbjct: 529 PVRHHP 534
>gi|71005224|ref|XP_757278.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
gi|46096457|gb|EAK81690.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
Length = 881
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 205/537 (38%), Positives = 283/537 (52%), Gaps = 115/537 (21%)
Query: 90 DLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT--------------TYHFGFPKTGALR 135
DL L++EALL + +++ +LPV+ D R + T +GF KTG R
Sbjct: 64 DLSKLEDEALLGS--TADYLLPVFVFDEREVELSGLPGYQRKGPEARTKEYGFWKTGGFR 121
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF---GAH--AVYAQKETCSEE 190
+F+ E + D+R L + G +L IR G PE++I +L K+F G H V+ QKE E
Sbjct: 122 TRFVSESVYDVRSRLRSVGSDLFIRFGIPEDVISNLVKAFQAEGTHVEGVWLQKEMTYPE 181
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 250
+NVE + + L+ + Q + G T+ H D+PF+ S PDV+T FRK
Sbjct: 182 INVENAIVEKLRGSGVPVQ------------FVNGKTLIHPADLPFESSETPDVFTPFRK 229
Query: 251 SIEA--KCTVRGCIRIPSSFG--PP--PSVVDW-----------GSVP-LIEQLELHSPK 292
+EA VR P+ F PP PS D+ G P +E + +
Sbjct: 230 KVEALGASMVRPVKHPPAKFKSFPPGVPSTPDYALDVSYEVDVDGLAPRALETKDKQEGQ 289
Query: 293 VS--KGMRFV-------------------------------GGESAALGRVNEYF----- 314
VS +RF+ GGES+AL R++ YF
Sbjct: 290 VSFHDILRFLLTPLNDSQLPPTLEASALLQQRHPASAFPLRGGESSALERLDWYFVRGKS 349
Query: 315 -----WKKD---LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
W K + YK+TRN ++G YSTK SP+LA GS+SPR I+E + +ER+
Sbjct: 350 ADSSRWGKSDPPPVARYKQTRNNLIGHAYSTKMSPFLAYGSVSPRQIWEALDDHERKFGE 409
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG------PR----KLEYKW------SQD 410
+ +TYWV FEL+WRDYF F++ K+G+ L+ LGG PR K+E W +D
Sbjct: 410 DQNTYWVRFELLWRDYFFFVAEKFGHLLYDLGGFERATDPRQAAKKMEDGWWRKWDPLKD 469
Query: 411 QKLFESWR--DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFE 468
E R +G TG P IDAN+ EL +GFMSNRGRQ SFL +D+G DWR+GAE+F+
Sbjct: 470 GPDHEMTRLLEGRTGIPFIDANILELRESGFMSNRGRQNVASFLSKDLGYDWRIGAEFFQ 529
Query: 469 TCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ L+DYDP SNYGNW Y AGVGNDPR R F+ KQA++YD G+YV W+P L+ L
Sbjct: 530 SHLIDYDPTSNYGNWQYVAGVGNDPRASRQFNTVKQAKDYDSHGDYVKLWIPALRNL 586
>gi|443895299|dbj|GAC72645.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 876
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 202/537 (37%), Positives = 279/537 (51%), Gaps = 115/537 (21%)
Query: 90 DLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT--------------TYHFGFPKTGALR 135
DL L++EALL + +++ +LPV+ D R + T +GF KTG R
Sbjct: 67 DLSKLEDEALLGS--TADYLLPVFVFDEREMELSGLPGYNRKGPEARTKEYGFWKTGGFR 124
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF---GAH--AVYAQKETCSEE 190
+F+ E + D+R L G +LLIR G PE++I +L +F G H V+ QKE E
Sbjct: 125 TRFISESVYDVRSRLRAAGSDLLIRFGIPEDVIANLVSAFQADGTHVEGVWLQKEMTYPE 184
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 250
++VE + + LQ + Q + G T+ H D+PF+ S PDV+T FRK
Sbjct: 185 IDVENAIVEKLQGTGVPVQ------------FVNGKTLIHPADLPFESSETPDVFTPFRK 232
Query: 251 SIEA--KCTVRGCIRIPSSFG--PP--PSVVDW-----------GSVP-LIEQLELHSPK 292
+EA VR P+ F PP P D+ G P +E + +
Sbjct: 233 KVEALGPNMVRPVKPSPAKFKSFPPRVPRTTDYALDVSYEVDVDGLAPRALEPKDKQEGQ 292
Query: 293 VS--KGMRFV-------------------------------GGESAALGRVNEYF----- 314
VS +RF+ GGES+AL R++ YF
Sbjct: 293 VSFHDILRFLLTPLNDSQLPPTLEASALLQQRHPASAFPLRGGESSALDRLDWYFVRGKS 352
Query: 315 -----W-KKDLLKV--YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
W K D V YK+TRN ++G YSTK SP+LA GSISPR I+E + +E++
Sbjct: 353 ADSTRWGKADPPPVARYKQTRNNLIGHAYSTKMSPFLAYGSISPRQIWEALDDHEKKFGE 412
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESW-------RD 419
+ +TYWV FEL+WRDYF F++ K+G+ L+ LGG + +K+ E W +D
Sbjct: 413 DQNTYWVRFELLWRDYFFFVAEKFGDLLYDLGGFERATDPRQAAKKMEEGWWNKWDPLKD 472
Query: 420 GC-----------TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFE 468
G TG P IDAN+ EL +GFMSNRGRQ SFL +D+G DWR+GAE+F+
Sbjct: 473 GAEHQMTRLLEGRTGIPFIDANILELRESGFMSNRGRQNVASFLSKDLGYDWRIGAEFFQ 532
Query: 469 TCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ L+DYDP SNYGNW Y AGVGNDPR R F+ KQA++YD G+YV W+P L+ L
Sbjct: 533 SHLIDYDPTSNYGNWQYVAGVGNDPRASRQFNTIKQAKDYDSHGDYVKMWIPALRNL 589
>gi|403375006|gb|EJY87472.1| hypothetical protein OXYTRI_02690 [Oxytricha trifallax]
Length = 579
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 175/467 (37%), Positives = 257/467 (55%), Gaps = 43/467 (9%)
Query: 84 IVWFRNDLRVLDNEAL---LKAWDSSEMVLPVYCVDPRH-SQTTYHFGFPKTGALRAQFL 139
I+WFRNDLR+ DN L + ++ ++PVY D R ++ + K G +R +F+
Sbjct: 71 ILWFRNDLRLHDNAILNYAVSQKTKNKEIIPVYSFDQRFLNRKVKKYDTLKCGLVRTRFI 130
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+E + R L G LL+ KPE+ +P L + + Q E CSEEL VE+ V++
Sbjct: 131 LESAQNFRDRLEKIGSKLLVTMDKPEDFLPQLIDKDVDNTIVYQDEICSEELAVEKAVKE 190
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
S ++ +WG+T+YH+DD+ F LP +Y FR+ A +R
Sbjct: 191 --------------SCEGQKIVNLWGSTVYHVDDLGFHPKELPHIYGKFREKT-ADVKIR 235
Query: 260 GCIRIPSSFGPP----------------PSVVDWGSVPLIEQLELHSPKVSKGM-RFVGG 302
P S P P++ D+G EQ+E PK + FVGG
Sbjct: 236 PLFAQPKSGQLPYAKEPSPLMEEASKFMPTLKDFGFTK--EQIE--KPKDKRACYDFVGG 291
Query: 303 ESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYER 362
E A+ R+NEY + Y TRN ++G +YS+KFSPWLA G++SP+YIY +VK +E+
Sbjct: 292 EDNAVKRLNEYIMGTKSVGSYAITRNNLIGANYSSKFSPWLACGALSPKYIYYQVKEFEK 351
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGC 421
+N+ST L EL WRD++RF ++KYGN +F G E Y W +D++ W++G
Sbjct: 352 THKSNESTKVFLDELFWRDFYRFWAIKYGNQMFSSYGIYNREYYNWQEDRENVRRWKEGS 411
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG P+IDA M+E + TGFM NRGR I +L D+ DWR GA FE L+D+D SNYG
Sbjct: 412 TGMPIIDAFMRECNETGFMPNRGRMIVACYLTMDLKHDWREGAYHFEEKLIDHDVQSNYG 471
Query: 482 NWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
W + AG+G P F+ KQ++++D+ GEY+ W+P+LK +P E
Sbjct: 472 GWNFSAGIG--PGRVLVFNSIKQSKDHDKHGEYIKMWVPELKNVPIE 516
>gi|343427008|emb|CBQ70536.1| related to Deoxyribodipyrimidine photo-lyase [Sporisorium reilianum
SRZ2]
Length = 881
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 201/539 (37%), Positives = 277/539 (51%), Gaps = 119/539 (22%)
Query: 90 DLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT--------------TYHFGFPKTGALR 135
DL L++EALL + +++ +LPV+ D R + T +GF KTG R
Sbjct: 64 DLSKLEDEALLGS--TADYLLPVFVFDEREMELSGLPGYQRKGPEARTKEYGFWKTGGFR 121
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF---GAH--AVYAQKETCSEE 190
+F+ E + D+R L + G +LLIR G PEE+I +L +F G H V+ QKE E
Sbjct: 122 TRFISESVYDVRPRLRSVGSDLLIRFGTPEEVISNLVHAFQAQGTHVEGVWMQKEMTYPE 181
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 250
++VE + + L + Q + G T+ H D+PF+ S PDV+T FRK
Sbjct: 182 IDVENAIVEKLHGSGVPVQ------------FVHGKTLIHPADLPFESSETPDVFTPFRK 229
Query: 251 SIEA--KCTVRGCIRIPSSFG--PP--PSVVDW-------------------------GS 279
+EA VR PS F PP PS D+ G
Sbjct: 230 KVEALGPKMVRPVKHSPSKFKSFPPVVPSTPDYALDVSYEVDVDGLAPRALETKDKQEGQ 289
Query: 280 V-------------------PLIEQ---LELHSPKVSKGMRFVGGESAALGRVNEYF--- 314
V P +E L+ P + +R GGES+AL R++ YF
Sbjct: 290 VSFHDILHFLLTPLNDSQLPPTLEASALLQQRHPASAFPLR--GGESSALDRLDWYFVRG 347
Query: 315 -------W-KKDLLKV--YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERER 364
W K D V YK+TRN ++G YSTK P+LA GSISPR I+E + +E++
Sbjct: 348 KSADSSRWGKADPPPVARYKQTRNNLIGHAYSTKMPPFLAYGSISPRQIWEALDDHEKKF 407
Query: 365 VANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESW------- 417
+ +TYWV FEL+WRDYF F++ K+G+ L+ +GG + +K+ E W
Sbjct: 408 GEDQNTYWVRFELLWRDYFFFVAEKFGHLLYDMGGFERATDPRQAAKKMEEGWWRKWDPL 467
Query: 418 -----------RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEW 466
+G TG P IDAN+ EL +GFMSNRGRQ SFL +D+G DWR+GAE+
Sbjct: 468 KDGPEHEMTRLLEGRTGIPFIDANILELRESGFMSNRGRQNVASFLSKDLGYDWRIGAEF 527
Query: 467 FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
F++ L+DYDP SNYGNW Y AGVGNDPR R F+ KQA++YD G+YV W+P L+ L
Sbjct: 528 FQSHLIDYDPTSNYGNWQYVAGVGNDPRASRQFNTVKQAKDYDSHGDYVKMWIPALRNL 586
>gi|443895003|dbj|GAC72349.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 610
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 205/549 (37%), Positives = 265/549 (48%), Gaps = 107/549 (19%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEM----------VLPVYCVDPRHSQT------- 122
+ V I RNDLR+ D+ + + VLPVY D RH +
Sbjct: 3 RNVLIAVLRNDLRLHDHPIFHLCAEPTPASAAFKKPVTHVLPVYVWDQRHVEVSGFPNLE 62
Query: 123 ----------------TYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEE 166
T G +TG R +F+ E + DLR L G +L + G PE
Sbjct: 63 KAGKQGGGKGSSQFAKTRELGIWRTGIHRTKFINESVFDLRDRLRAVGSDLAMFAGTPES 122
Query: 167 IIPSLAKSF-----GAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLK 221
++PSL KS AVY +E +EE+NV+R L ++ Q K
Sbjct: 123 VVPSLIKSIRDKGDTVEAVYLGREINTEEVNVQR----RLDAILADLQC--------PFK 170
Query: 222 LIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGP--------PPS 273
L+ G ++ H D+ F LPDV+THFRK +E+ R + P P P
Sbjct: 171 LLEGKSLIHSRDLGFPVKQLPDVFTHFRKQVESPDMFREPVPAPDKLKPFAEVQVDDAPG 230
Query: 274 VVDWGS-----------------VPLIEQLEL-HSPKVSK-------------GMRFVGG 302
S PL+++ L H +SK + GG
Sbjct: 231 CFGLSSKSAQGLDRKETVEKHLVQPLLDEPVLGHKELLSKVASSPATFDVPHSAFPYRGG 290
Query: 303 ESAALGRVNEYFW--KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY 360
E+ AL R+ YF K YKETRNEMLG DYSTKF+ LA G +SPR I +
Sbjct: 291 ETEALKRLEHYFGGAKSSPAAHYKETRNEMLGADYSTKFAAALAHGLLSPRLIAQRAAEL 350
Query: 361 ERERV-ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG------PRKLE---YKWSQD 410
+ YW+LFEL+WRDYF F+ K+G+ LF LGG PR + Y+W
Sbjct: 351 DASTGNTKGGGYWILFELLWRDYFYFVGWKFGSHLFTLGGIEEEISPRSAQSKAYEWKST 410
Query: 411 QKL------FESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGA 464
L F W TG PLIDANM EL TGFMSNRGRQ SFL +D+G +WR GA
Sbjct: 411 DSLSDGKDAFVRWATARTGVPLIDANMVELVHTGFMSNRGRQNVASFLTKDLGWNWRHGA 470
Query: 465 EWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKA 524
E+FE+ L+DYD SN+GNW Y AGVGNDPR R F+ KQ ++YD +GEYVA WLPQLK+
Sbjct: 471 EFFESWLVDYDTNSNWGNWQYVAGVGNDPRSSRQFNPIKQGKDYDAKGEYVATWLPQLKS 530
Query: 525 LPKERRNFP 533
LP+ R+ P
Sbjct: 531 LPERVRHHP 539
>gi|456063890|ref|YP_007502860.1| Deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
gi|455441187|gb|AGG34125.1| Deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
Length = 418
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 173/440 (39%), Positives = 238/440 (54%), Gaps = 27/440 (6%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G I WFRNDLR+ DN A +A +++ +LPVY D + +T Y GF + G R FL
Sbjct: 2 GTLIYWFRNDLRLADNPAFTQACLNADYLLPVYVHDTKEQETVY--GFERQGPHRKAFLR 59
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
L DL+ L +G +LL GK E++ L K A A+Y ++ EE+ R++++
Sbjct: 60 ASLDDLKTRLQAQGSDLLEFSGKSAEVLLRLLKDSAADAIYCEQIEAPEEIEQVRILQEQ 119
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE-AKCTVR 259
V W ++M PFD ++PDV+T FR+ +E A+
Sbjct: 120 GANV----------------DEYWQSSMLDPQHFPFDLETMPDVFTAFRREVERAQLKFA 163
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
I P P+ + GS+ + P + +GG S A + +Y ++ L
Sbjct: 164 QPINAPKKIPSLPAALPQGSILPSRAQSVAHPYL------LGGASHAQAHLKQYL-ERRL 216
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
YKETRN+++G DYS+KFS WL+ G IS R I ++ YE AND TYW+ FEL+W
Sbjct: 217 ADSYKETRNQLIGMDYSSKFSAWLSLGCISARDIAAQLNDYENSYGANDGTYWLWFELLW 276
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFRFI KYG L+ G + K S FE WR G TG L+DA M+EL +G+
Sbjct: 277 RDYFRFIHFKYGQKLYRASGLTGVSVKPSCASS-FEQWRTGNTGAALVDAGMRELHQSGY 335
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
+SNR RQI S+ + DM DWR GA WFE+ L+DYD SN GNW Y AG G DPR R F
Sbjct: 336 LSNRIRQIVASYWIYDMKGDWRAGAAWFESQLIDYDVYSNQGNWLYIAGRGTDPRGGRPF 395
Query: 500 SIPKQAQNYDREGEYVAYWL 519
++ KQAQ++D + Y WL
Sbjct: 396 NVTKQAQDHDPQEIYRKLWL 415
>gi|358059279|dbj|GAA94967.1| hypothetical protein E5Q_01622 [Mixia osmundae IAM 14324]
Length = 594
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 193/519 (37%), Positives = 265/519 (51%), Gaps = 84/519 (16%)
Query: 78 NGKGVAIVWFRNDLRVLDNEALLKAW------DSSEMVLPVYCVDPRHSQ---------- 121
G+ +AI R DLR+ DN A+ A + VLP+Y D R +
Sbjct: 2 TGRSIAIALLRCDLRIHDN-AIFHATHYGPTASNITHVLPLYVFDERQIELSGLPDYKRK 60
Query: 122 ----TTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF-- 175
T GF ++GA +A+FL E + D++K L + G +L IR G PE+ S K+
Sbjct: 61 GPPAKTRVCGFWRSGAFKAKFLTEAVFDVQKRLRSAGSDLAIRFGVPEDATISFIKALQK 120
Query: 176 ---GAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLD 232
+Y Q+E C EE+ E + K + + D + H D
Sbjct: 121 NGDTVEGIYLQRELCVEEIASENRLMKGASALGVKVHMYDTKA------------LIHPD 168
Query: 233 DIPFDHSSLPDVYTHFRKSIEA--KCTVRGCIRIPSSFGPPPS----------------- 273
D+PF PDV+T FRK +E R ++ P+ F P P
Sbjct: 169 DLPFKVDKTPDVFTPFRKRVEGLNDKMSRPILKTPNHFKPYPEPLPDSDAYGSQLTDRKR 228
Query: 274 --VVDWGSVPL--IEQ-----LELHSPKVSK-GMRFVGGESAALGRVNEYFWKKDLLKV- 322
V+ + PL EQ + P + K + GGE+AAL R++ YF++
Sbjct: 229 EEVLAYILKPLSGTEQHQNIMAQKKDPSLIKSAFPYEGGETAALERLDYYFFQGAPPPAA 288
Query: 323 -YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK+TRN++LG YSTK SP+L GSISPR + + V +E + TYWV FEL+WRD
Sbjct: 289 RYKQTRNQLLGHSYSTKLSPFLCIGSISPRLVMKAVDDHEAKFELTQDTYWVRFELLWRD 348
Query: 382 YFRFISLKYGNSLFHLGG------PRKLEYK------WSQDQKL---FESWRDGCTGYPL 426
YF +IS KYG +LF L G P+K K W++++ W G TG P
Sbjct: 349 YFLYISRKYGVNLFLLEGFEGVTDPKKAANKVDDWNDWTEEEASHGKLSRWLKGTTGVPF 408
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
IDANM EL +GFMSNRGRQ SFL +D+ DWR+GAE+FE+ L+DY+PC+NYGNW Y
Sbjct: 409 IDANMIELVESGFMSNRGRQNVASFLTKDLYYDWRIGAEYFESHLVDYEPCANYGNWQYV 468
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
AGVGNDPR R F+ KQ+++YD G Y+ +WLP L L
Sbjct: 469 AGVGNDPRASRQFNPIKQSKDYDAHGRYIKHWLPALSKL 507
>gi|376317003|emb|CCG00379.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteriia
bacterium]
gi|376317044|emb|CCG00419.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteriia
bacterium]
Length = 415
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 156/431 (36%), Positives = 247/431 (57%), Gaps = 20/431 (4%)
Query: 91 LRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNL 150
+R+ DN +L KA ++S+ + +DP++ T +GF KT RA+FL+E ++DL+ L
Sbjct: 1 MRIEDNISLSKAINNSDNIFAFINIDPKNFLLT-KYGFKKTEKYRAKFLLETISDLKSQL 59
Query: 151 MNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQS 210
++L+I H ++ I + ++ +Y Q E +EL E + + + Q
Sbjct: 60 DTLNISLIITHKDFDKSIKEIINNYEITNIYTQTEWTRDELKEESFIPDEINLIKDFDQ- 118
Query: 211 NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGP 270
++ +D+ + ++P +++FRK E +V + IP+S P
Sbjct: 119 ----------------FLFSPNDVKGLYDNIPRGFSNFRKKCEKYLSVNDTLSIPNSLNP 162
Query: 271 PPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDLLKVYKETRN 328
++ S+P + L V K RF GGE+ A R+ YF+ + YK TRN
Sbjct: 163 DNKILFDYSIPTLSDLGFEDFDVHKDSVFRFKGGETNAKDRIKNYFFDTRNVSRYKLTRN 222
Query: 329 EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISL 388
++G DYS+KFSPWLA+GS+S +YI++ +K YE + NDSTYW+ FEL+WRD+F+++S+
Sbjct: 223 GLIGEDYSSKFSPWLANGSVSVKYIFKLLKEYETKVEKNDSTYWLYFELIWRDFFKYVSM 282
Query: 389 KYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIA 448
++ + F+ G + +WS D+ + W +G T P I+ANM ELS TGFMSNRGRQ
Sbjct: 283 QHKDKFFNKDGIYGEDKEWSDDKDVLLKWINGKTDEPFINANMIELSNTGFMSNRGRQNV 342
Query: 449 CSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNY 508
++L +++ IDWR+GAE+FE+ L+DYD SNYGNW Y AG+GND R F+ Q++ Y
Sbjct: 343 ANYLTKELKIDWRIGAEYFESMLIDYDVHSNYGNWLYNAGIGNDSMPFRKFNPKLQSERY 402
Query: 509 DREGEYVAYWL 519
D + Y WL
Sbjct: 403 DPDKSYEKTWL 413
>gi|225010911|ref|ZP_03701378.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
gi|225004958|gb|EEG42913.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
Length = 427
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 175/445 (39%), Positives = 248/445 (55%), Gaps = 31/445 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+IVWF N+LRV DN L A +++ V+ VYC++P FPK G RA+F +E
Sbjct: 3 SIVWFTNNLRVADNPLLTAACKNNANEVVGVYCLNPEKLDG----DFPKIGPFRAKFNVE 58
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L DL+++L + I G P + +P +Y QK EE
Sbjct: 59 SLLDLKRSLEELNIPFAILIGDPTKRLPEYINENNIGTLYFQKVWHEEE----------- 107
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
V+++ + K + + QL ++ + + IPF+ LP V+T FRK +EA V
Sbjct: 108 --VLINKEIEAKISPNIQLVSLYDQFLLGPEIIPFELYKLPKVFTPFRKKVEATLEVPAP 165
Query: 262 IRIPS----SFGPPPSVVD--WGSVPLIEQLELHSPKVSK--GMRFVGGESAALGRVNEY 313
+ +P+ + P D W S+ EL S K+ F GGE AA R++ Y
Sbjct: 166 LEVPAKQTNTSNTPLFYSDALWASI----SKELLSIKIDSRSAFPFKGGEKAAQERIDHY 221
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F+ D + YKETRN ++G DYSTK S WLA+G IS R IY ++K+YE+ AN+STYWV
Sbjct: 222 FFSTDHVAQYKETRNGLIGLDYSTKLSAWLANGCISARTIYYQLKAYEKTVKANESTYWV 281
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
LFEL+WR++F+++ LK+ N LF GG + D K++ W G T P I+ANMKE
Sbjct: 282 LFELLWREFFKYVGLKHKNDLFKSGGINHKSFAQGNDPKVYNDWISGTTHSPFINANMKE 341
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
LS TG+MSNRGRQ S+ + + DWR+GA +FE+ L+DYD SN+ NW Y +GVGNDP
Sbjct: 342 LSQTGWMSNRGRQNVASYWSKTLDQDWRIGATYFESQLIDYDVDSNWANWMYTSGVGNDP 401
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R DR F+ +QA YD + + W
Sbjct: 402 R-DRIFNPERQADMYDPQKAFQKLW 425
>gi|357466479|ref|XP_003603524.1| Cryptochrome DASH [Medicago truncatula]
gi|355492572|gb|AES73775.1| Cryptochrome DASH [Medicago truncatula]
Length = 323
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 147/246 (59%), Positives = 176/246 (71%), Gaps = 6/246 (2%)
Query: 7 RNSLASISAQIEPRFRFRTMNIIASKNRNPNQNIQQKVIPHCQVIPGADSREINHIVEET 66
+++L SI P RF+ NI + N ++ Q +P DS E+ + +T
Sbjct: 24 KSTLTSILTITNPTTRFQFPNI--AMNLCTTKSEPSASSSSMQHVPELDSNEMERVANQT 81
Query: 67 FGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHF 126
F RYTS KR+GKG AIVWFRNDLRVLDNE L KAW SS+ +LPVYC+DPR TTYHF
Sbjct: 82 FQRYTSNNTKRSGKGTAIVWFRNDLRVLDNETLYKAWLSSQTLLPVYCIDPRLFATTYHF 141
Query: 127 GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKET 186
GFPKTGALR QFL+ECL DLRKNLM RGLNLLI+HGKPE+I+PSL K++GAH VYAQKET
Sbjct: 142 GFPKTGALRTQFLLECLDDLRKNLMKRGLNLLIQHGKPEDILPSLVKAYGAHTVYAQKET 201
Query: 187 CSEELNVERLVRKNLQQVVL----SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP 242
CSEELNVER V LQQVV+ S+ + S +HP+L+ +WGTTMYH DD+PFD LP
Sbjct: 202 CSEELNVERSVNNRLQQVVVPSNGSAGAATTSNSHPKLQFVWGTTMYHHDDLPFDVPCLP 261
Query: 243 DVYTHF 248
DVYT F
Sbjct: 262 DVYTQF 267
>gi|261856009|ref|YP_003263292.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
gi|261836478|gb|ACX96245.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
Length = 447
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 167/456 (36%), Positives = 245/456 (53%), Gaps = 27/456 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ WFR DLR+ DN ++A D ++ +LPVY +DP Q T +GF + G R L + L
Sbjct: 5 LYWFRQDLRLRDNRCFIRACDQADALLPVYILDPAMEQPT-RWGFDRIGPHRRVVLGQAL 63
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L + L RG L + G+P + + ++ + V+ + +E + ++++L+
Sbjct: 64 RGLDRQLRQRGSGLCLLQGQPVDQLLAMVRQGAIDTVWVEDIAAPQERALVDALKQSLEP 123
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE-AKCTVRGCI 262
+ +S + W +++ DD+PF LPD +T FRK +E A +
Sbjct: 124 LGVSVYTG------------WQSSLIAPDDLPFAIDRLPDSFTPFRKRVEQAAVCIEHPY 171
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLEL-----HSPKVSKGMRFVGG-------ESAALGRV 310
P + P P V + + + Q + P V F E A +
Sbjct: 172 PAPDAVPPWPESVPYPTASIDAQFDALCGASTRPAVDARSAFPCDDPDCSVDEIGAQRHL 231
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
++YF + L YK TRN+++G DYS+K+SP+LA G +S R +Y + +E+ R AN+ T
Sbjct: 232 DQYF-ARGLPHTYKATRNQLIGKDYSSKWSPFLALGVLSARQVYAARQHFEQARGANEGT 290
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW+ FEL+WRDYFRF+ LKYG L+H G + D FE W++ TG+ IDA
Sbjct: 291 YWLRFELLWRDYFRFLHLKYGRRLYHARGLAPDRPAPTHDADRFERWKNADTGHAFIDAA 350
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M ELS TG++SNR RQ+ S+L+ D+G DWR GA WFE+ L+DYD SN GNW Y AG G
Sbjct: 351 MTELSRTGYLSNRMRQVVASYLIHDLGCDWRAGAAWFESQLVDYDVYSNQGNWLYLAGYG 410
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
DPR R F+ KQAQ+YD G Y A WL A+P
Sbjct: 411 TDPRGSRRFNPDKQAQDYDPGGAYRALWLSGTAAMP 446
>gi|157325494|gb|ABF59870.2| cryptochrome dash [Karenia brevis]
Length = 512
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 171/453 (37%), Positives = 244/453 (53%), Gaps = 33/453 (7%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
WFR DLR+ D AL A + + +LP+Y DP G K+ A RA+FLIE L +
Sbjct: 13 WFRTDLRLDDQPALSTACEDALSLLPIYVFDPAKFIDLTLAGARKSSARRARFLIESLVN 72
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LR+ L +RG L + G P +I L S A A+Y + CSEE E V ++
Sbjct: 73 LRRRLEDRGSGLAVAIGDPAVVIADLCAS--ASAIYVTQGICSEETQDEARVESKMKAPA 130
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI--- 262
L S+ +WG ++Y D+ + + P ++++F+K E +R +
Sbjct: 131 LLSR-------------VWGGSLYFPDECGCNPTKAPLLFSNFKKKAEVFGKIREPLAEL 177
Query: 263 ----RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--------MRFVGGESAALGRV 310
+P + P +P + +L S +++ + F GGE AAL R+
Sbjct: 178 TKLPSLPGAVCEPDLSQALRFMPTLAELGFESEEINAAEFDDPRGVLPFSGGEDAALTRL 237
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
++ W D L+ Y RN M G YS+KFSPWLA G +SPR +++EV+ YE+ERV N ST
Sbjct: 238 QKWIWDDDHLREYWMIRNGMKGEGYSSKFSPWLALGCLSPRRVWKEVQRYEKERVKNKST 297
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGG-PRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
YW++FELMWRD+F +++L +G+ LF GG + W + W++G TG L+DA
Sbjct: 298 YWLVFELMWRDFFVYMALTHGDKLFRKGGITGDRKRSWPGSTTDLDRWKNGKTGDLLVDA 357
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
NM EL TG+MSNRGRQ S+L+ +M +DWR GA FE LLDYDPCSN+GNW AG+
Sbjct: 358 NMLELLATGWMSNRGRQNVASYLIFNMRVDWRYGAAHFEEHLLDYDPCSNWGNWVAAAGL 417
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL 522
+ F+ Q YD EYV +WL L
Sbjct: 418 TG--QRVNKFNTLYQLDRYDPSREYVKHWLGNL 448
>gi|443474143|ref|ZP_21064164.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
gi|442905078|gb|ELS29993.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
Length = 472
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 169/455 (37%), Positives = 248/455 (54%), Gaps = 21/455 (4%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A++W + DLR LD+ L A ++ +LP++ +DP+ + + G + G RA+FL+E
Sbjct: 4 ALLWLKQDLR-LDDHPALHAAIQADRLLPLFVLDPQWLRPS-PLGPRRLGVHRARFLLES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA L L G LL+ G E +IPSL + V +E EL+ R VR L
Sbjct: 62 LAALDAGLRQHGSRLLVVQGDAERVIPSLVERLDLDEVLTLEEVAPFELDEMRRVRHALG 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ T P G +++ +++P +LP V+ FR +EA+ V
Sbjct: 122 VPL---------TEWP------GNSLFREEELPVPLQALPSVFNRFRDLVEARVHVFQPN 166
Query: 263 RIPSSFGPPPSVVDWGSVPL--IEQLELHSP--KVSKGMRFVGGESAALGRVNEYFWKKD 318
P + P P+ PL + +L L P + F GGE AAL R+ +Y W+
Sbjct: 167 PTPHALPPLPTGAAALLTPLPSLSRLGLGEPLGVPATAFPFSGGEPAALARLRDYLWESR 226
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
++ Y+ + M+G +YS+K SPWLA+GS+SPR + E+ E + +DST + +L+
Sbjct: 227 SIRDYRIRSDGMIGSEYSSKLSPWLANGSLSPRRVAAELHRLESQHGRDDSTQQLWHQLL 286
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YFR+ + G++LF G + + F W G TG PL+DANM+EL MTG
Sbjct: 287 WREYFRWTMRRLGDALFRADGLKATARAPRNLDERFHGWCIGRTGMPLVDANMRELVMTG 346
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MS RGRQ+ S+LV D+ DW GA WFE LLDYDP SN+GNW Y AGV DP+ +
Sbjct: 347 WMSGRGRQVVASYLVNDLQQDWCHGAAWFEEHLLDYDPASNWGNWAYLAGVACDPQRAKA 406
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
F+ +QA YD E YV+ WLP+L+ LP E+R+ P
Sbjct: 407 FNALRQAFQYDPEAAYVSLWLPELRGLPVEQRHAP 441
>gi|119713707|gb|ABL97757.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
EB0_41B09]
Length = 424
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 178/441 (40%), Positives = 246/441 (55%), Gaps = 25/441 (5%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+I WFRNDLRV+DN +L +A +SS+ +L VY D + + T +GF + G R +L +
Sbjct: 3 SIYWFRNDLRVIDNLSLNEAIESSDEILFVYMQDVQSFKDT-EWGFSRMGPHRKLYLSQG 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L++ L N G +L + + L + F +Y + EEL+ E +R
Sbjct: 62 LNALQEKLSNYGHSLNYYLDDTVDGLLKLVEKFHIDRIYCESIDSHEELDQE--IRLRGH 119
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT--VRG 260
+V L S + + ++ D IPF+ + LPDV+T FRK IE++ ++
Sbjct: 120 KVDLYS--------------YYQSGLFLNDQIPFNLNDLPDVFTKFRKEIESREVKPIKP 165
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGM---RFVGGESAALGRVNEYFWKK 317
+ I S+VD S IE ++ PK S + RF GGE + YF
Sbjct: 166 SL-INQRINAIKSIVDEESNE-IEMEQMSYPKSSFPISEDRFFGGEEKGFTFLEAYF-SS 222
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ YK+TRNE++G D+STKFSPWLASG IS R +Y+ + SYE + N+STYW+ FEL
Sbjct: 223 NKPSTYKKTRNELMGIDFSTKFSPWLASGYISARQVYDFLLSYELNVIKNESTYWIFFEL 282
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR+YFR I KYG +FH G + K S + FE W++G T I+A MKEL T
Sbjct: 283 LWREYFRLIFKKYGKKIFHRYGLGLSDEKVSHSDENFELWKEGRTASNFINAGMKELKET 342
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GF+SNR RQI S+LV ++ DWR GA WFE+ L+DYD SN+ NW Y AG G DPR R
Sbjct: 343 GFLSNRMRQIVASYLVNELSCDWRAGAAWFESQLIDYDVSSNHCNWAYIAGHGTDPRGGR 402
Query: 498 YFSIPKQAQNYDREGEYVAYW 518
YF+I KQ YD G Y W
Sbjct: 403 YFNIQKQKSTYDPYGSYEKLW 423
>gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
Length = 440
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 172/442 (38%), Positives = 248/442 (56%), Gaps = 28/442 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V++ WF DLR+ DN ALL A S+M+L VY VDPR F GA R +FL +
Sbjct: 2 VSLYWFTRDLRLHDNAALLAA-SKSDMLLCVYVVDPRWF-VPGPFQCRALGAHRWRFLWQ 59
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L ++L G L I GKPE++IP L + V + + E + +R L
Sbjct: 60 SLISLERDLRPLGQRLHIAFGKPEQVIPDLVHDHNINRVIRSRLPGTREAVQWKSLRDKL 119
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA---KCTV 258
Q V Q + + +++ +P D S LPD ++ FRK +E + +
Sbjct: 120 PQTVFQ-----------QFETL---SLFTEGSLPMDLSHLPDTFSQFRKQVEKTGNRNSE 165
Query: 259 RGCIRIPSSFGPPPSVV--DWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
R IR ++ P P + G P I + P+ G R GGESA L R+N+Y +
Sbjct: 166 RLRIRTLTALPPAPGYPQDNRGECPAIAE-----PRHPIGFR--GGESAGLERLNDYLFV 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
+ YKETRN + D S++ SPWLA+G++S R + + + YE + V N+STYW+ FE
Sbjct: 219 NHRIAHYKETRNALDEADASSRLSPWLANGALSAREVADTISDYENQHVKNESTYWLWFE 278
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L+WR+YF + +LK+G SLFH G ++ + S F++W G T YPL++A M +L
Sbjct: 279 LLWREYFYWYALKHGASLFHRDGVQQKKRSTSFYPHRFKAWCAGSTEYPLVNAAMNQLRE 338
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG++SNR RQI S LV ++ +DWR GA WFE L+DYD SNYGNW Y AGVG DP+
Sbjct: 339 TGYISNRSRQIVASCLVNELELDWRYGAAWFEEQLVDYDVASNYGNWQYQAGVGADPKGP 398
Query: 497 RYFSIPKQAQNYDREGEYVAYW 518
R+F++ KQA+ +D +G++V W
Sbjct: 399 RHFNLEKQARQFDPDGDFVKRW 420
>gi|409098421|ref|ZP_11218445.1| DASH family cryptochrome [Pedobacter agri PB92]
Length = 424
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 166/441 (37%), Positives = 243/441 (55%), Gaps = 30/441 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ DNE L++A S+ +LPVY +DPR T +G KTG +RAQF++E +
Sbjct: 6 LVWFRNDLRLHDNEMLVEAISKSDSILPVYILDPRSFGET-KYGTLKTGNIRAQFILESV 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
LR +L G NLLI G PE+IIPSL + + VY +E EE +V LV L +
Sbjct: 65 LGLRASLKQIGGNLLIAEGNPEDIIPSLVQEYEITEVYHHREVAREETHVSTLVENALWK 124
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++ LK G T+Y+ +D+PF +PD + F+K IE ++ C
Sbjct: 125 LRVN------------LKHFIGHTLYNKEDLPFPIKDIPDAFNQFKKKIERDSIIKPCFL 172
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVS---KGMRFVGGESAALGRVNEYFWKKDLL 320
P V+DWG++ +E+L L SP+ F GGE+ L + + +
Sbjct: 173 APDRINVA-EVIDWGTLSSLEELHL-SPQQKDQRADFEFTGGEAEGLVHLQKVIVA---M 227
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW--VLFELM 378
+ +N +L +K S WLA GS+SPR +Y E+K + E V N + +L L+
Sbjct: 228 QQAATAKNLIL----VSKLSAWLAMGSLSPRKVYWEIK--KMEGVPNTKAMFNHILLGLL 281
Query: 379 WRDYFRFISLKYGNSLFHLGG-PRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
WRDYFRF+ KYGN+ F G + +Q+ F W+ G TG+ ++DA M EL+ T
Sbjct: 282 WRDYFRFMFKKYGNTFFSPNGFGSQGLVDAENEQENFSKWKTGQTGFAVVDAVMTELNQT 341
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GF+SN RQ A +L+ ++ + W +GA +FE L+DY+P SN+GNW AGVGND +
Sbjct: 342 GFISNIARQTAALYLINNLEVSWVLGAAYFEEKLIDYNPASNWGNWANVAGVGNDQKSKS 401
Query: 498 YFSIPKQAQNYDREGEYVAYW 518
F + K +N D +G Y W
Sbjct: 402 VFDLDKNIKNLDPKGNYALTW 422
>gi|221134513|ref|ZP_03560818.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
Length = 441
Score = 288 bits (737), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 161/448 (35%), Positives = 248/448 (55%), Gaps = 29/448 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTY-----HFGFPKTGALRAQ 137
+ WF +DLR+ DN L + + + +Y + TT F G R +
Sbjct: 4 GLYWFEHDLRLADNLPLQQTIAQIDQLHCIYIFNAADFSTTKKKGAGQFNQRHMGQHRYR 63
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELN-VERL 196
F+ + L DL+ L G L I +G+P +II L F + T E N + L
Sbjct: 64 FIRQALDDLQSQLHTFGQQLHIYYGEPLDIIEQLNTQFNFTHIGKHFHTGVYERNLISAL 123
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
+ + ++++ S T+Y +DD+P +LPDV++ FR+ +E C
Sbjct: 124 KIQYPNKTIINTNS---------------YTLYDIDDLPMSIENLPDVFSPFRRKVEKFC 168
Query: 257 TVRGCIR-IPSSFGPPPSVVDWGSVP-LIEQLELHSPKV----SKGMRFVGGESAALGRV 310
R +P SF PP VV ++P + +++ K+ R +GGE A ++
Sbjct: 169 EARLPDNALPVSF--PPVVVAEQNMPDELPAIQVCDKKLLAKNETVQRLIGGELKAKEQM 226
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
+ Y + L YKETRN + G ++S+K SPWLA+G ISPR + + YE + ANDST
Sbjct: 227 HHYTYGTQALSEYKETRNGLEGWEFSSKLSPWLAAGCISPRQVAAAITEYEAQHGANDST 286
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW+ FEL+WR++F++ LK+G +L+H G ++ + ++K+FE W +G T YP+I+A
Sbjct: 287 YWLFFELLWREFFQWQQLKHGKALYHRNGIQQKSPRGFHNKKVFEDWVNGDTAYPIINAC 346
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L TGFMSNRGRQ+ S + ++G+DW+ GA +FE L+D+DP SN+GNW Y AGVG
Sbjct: 347 MRQLKYTGFMSNRGRQLVASCFIHELGLDWQYGAAYFEEALIDFDPASNWGNWQYLAGVG 406
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYW 518
+DPR R F++ KQ Q YD GE++ YW
Sbjct: 407 SDPRGCRQFNLNKQTQTYDPHGEFIGYW 434
>gi|71023669|ref|XP_762064.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
gi|46101498|gb|EAK86731.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
Length = 623
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 195/558 (34%), Positives = 265/558 (47%), Gaps = 119/558 (21%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSS----------EMVLPVYCVDPRHSQT------- 122
+ + I RNDLR+ D+ L + + VLPVY D RH +
Sbjct: 3 RNILIALLRNDLRLHDHPILHVCSEPTPSTANFTQPITHVLPVYVFDQRHVEVSGFPRLE 62
Query: 123 ----------------TYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEE 166
T G +TG R +F+ E + DLR L G +L + G PE
Sbjct: 63 KARKDGGGKGSGEYAKTRELGLWRTGIHRIKFINESVFDLRDRLRRLGSDLAMFAGTPES 122
Query: 167 IIPSLAKSFGAH-----AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLK 221
+I SL AH AVY +E +EE+N+++ +++ L V ++
Sbjct: 123 VIASLIHQIRAHGDTVEAVYLSREINTEEVNIQKRLQRMLSDVQC------------RMH 170
Query: 222 LIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGP--PPSVVDWGS 279
+ ++ H D+ F S LPDV+THFRK +E R + P P V D
Sbjct: 171 MFETKSLIHSRDLGFPVSKLPDVFTHFRKQVERNRIWRAPLASPDRLKPFAEVPVEDAAG 230
Query: 280 V----------------------------PLIEQLELHSPKVSK---------GMRFVGG 302
V P++ EL + + K + GG
Sbjct: 231 VYSLSANKQHGLDRKNAVEKCLLQPLLDNPVLAHNELLARVMCKRGQVDVAHSAFPYRGG 290
Query: 303 ESAALGRVNEYFWKKDLLKV--YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY 360
E+ AL R++ YF + D YK+TRN+MLG DYSTKF LA G +SPR I + K+
Sbjct: 291 ETEALARLDHYFDRSDSCPAASYKQTRNQMLGTDYSTKFGAALALGLLSPRLIAQ--KAT 348
Query: 361 ERERVANDST---------YWVLFELMWRDYFRFISLKYGNSLFHLGG----------PR 401
E + +D+T YW++FEL+WRDYF F+ K+G+ LF L G P
Sbjct: 349 ELDNATHDATHNASNKGGGYWIIFELLWRDYFYFVGWKFGSKLFSLRGIEDDISARSAPS 408
Query: 402 KLEYKWSQDQKL------FESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRD 455
K +W L F W TG PLIDANM E+ TGFMSNRGRQ SFL +D
Sbjct: 409 KAS-EWKSSASLSDRDDGFVRWCTAQTGVPLIDANMVEMVQTGFMSNRGRQNVASFLTKD 467
Query: 456 MGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYV 515
+G +WR GAE+FE+ L+DY+P SN+GNW Y AGVGNDPR R F+ KQ +YD GEYV
Sbjct: 468 LGWNWRHGAEFFESWLVDYEPNSNWGNWQYVAGVGNDPRSSRQFNPIKQGNDYDANGEYV 527
Query: 516 AYWLPQLKALPKERRNFP 533
A WLP L +P + R+ P
Sbjct: 528 ATWLPLLSDMPPQYRHHP 545
>gi|118594165|ref|ZP_01551512.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
HTCC2181]
gi|118439943|gb|EAV46570.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
HTCC2181]
Length = 426
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 169/441 (38%), Positives = 241/441 (54%), Gaps = 23/441 (5%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+I WFRNDLR+ DN AL A ++S+ +L V+ +D + + F + G R F+ +
Sbjct: 3 SIYWFRNDLRLEDNAALNSALNNSDHILFVH-IDDDMNDAECEWQFSRRGQHRKIFMYQG 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +L+ NL + G +L GK I L ++VY + EE ERL+++
Sbjct: 62 LEELQLNLKSYGHHLNRFVGKTNLIFQELINRHHINSVYCESINAFEEQAQERLIKE--L 119
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV-RGC 261
V L S + ++MY +PFD LPDV+THFRK+IE V
Sbjct: 120 GVNLYS--------------YYQSSMYMPHQLPFDIKDLPDVFTHFRKNIETTGIVPEEP 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS---KGMRFVGGESAALGRVNEYFWKKD 318
I + ++D L ++L + S +F GGE A +++YF + D
Sbjct: 166 IALSGQIKNTIPILD-SKTNLTQELTEDYSQSSFPISDKKFKGGERTAQLHIDQYF-QSD 223
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
YK +RN ++G + STKFSPWL+ G IS IY +K YE+ ANDSTYW+ FEL+
Sbjct: 224 YPNSYKYSRNNLMGIECSTKFSPWLSLGFISANQIYSALKRYEQRNSANDSTYWIYFELL 283
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRDYFRF+ +KYG F+ G + +++ F W++G T I+A + EL+ TG
Sbjct: 284 WRDYFRFLFMKYGKIFFYKNGLGLSNKSFQHNEEKFNEWKNGKTPSSFINAGISELNQTG 343
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
F+SNR RQI S+LV ++ DWR GA WFE L+DYD SNYGNW+Y AGVG DPR R+
Sbjct: 344 FISNRMRQILASYLVNELACDWRAGAAWFEHQLIDYDVYSNYGNWSYIAGVGTDPRGGRH 403
Query: 499 FSIPKQAQNYDREGEYVAYWL 519
F++ KQ YD +G Y W+
Sbjct: 404 FNVDKQKNTYDPDGSYEKEWI 424
>gi|381394100|ref|ZP_09919818.1| cryptochrome DASH [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379330372|dbj|GAB54951.1| cryptochrome DASH [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 435
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/452 (35%), Positives = 244/452 (53%), Gaps = 26/452 (5%)
Query: 75 LKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
+K + FR+DLR+ DNEAL K + + V+ Y DP + + + +G G
Sbjct: 1 MKTKAHKFGLHLFRHDLRIDDNEALHKLVNECDYVVAAYIFDPENLRRS-KYGHCHLGKH 59
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAV-YAQKETCSEELNV 193
R FL + L L L + ++L + G P I L + + + +E+ +
Sbjct: 60 RHTFLDQGLLALEAALNDANIDLHMFSGDPVRNISELINNNNIDCISFEHHYGFNEQKQI 119
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHL--DDIPFDHSSLPDVYTHFRKS 251
+L + HP+ LI G + Y L D +PFD + +PDV++ FR+
Sbjct: 120 AQLRKL-----------------HPKTHLIDGQSHYLLMHDALPFDMADMPDVFSPFRRK 162
Query: 252 IEAKCTVRGCIR--IPSSFGPPPSVVDWGSVPLI--EQLELHSPK-VSKGMRFVGGESAA 306
+E TVR ++ + F S PL+ E L + PK S + GGE A
Sbjct: 163 VEKNLTVRKHLQEYLKEEFNQKLSQTLSVHKPLLNTEPLVSYKPKHTSSKNGYTGGEENA 222
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
R+N+YF+ D + YKETRN + G D+S++FS +LA+G +SP YI +++ YE +RV
Sbjct: 223 RARINDYFFNTDSIASYKETRNGLDGWDFSSRFSAYLAAGFVSPAYINQQLTKYEAQRVK 282
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
NDSTYW+ FEL+WR++F + K F+ GG + + F W+DG T YP+
Sbjct: 283 NDSTYWLFFELLWREFFHLQAKKQAGLFFNFGGIQNKPPAVMHNDAAFMQWKDGTTAYPI 342
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
++A MK+L+ TGFMSNR RQ+ S V ++ +DWR GA +FE L+D+D SNYGNW Y
Sbjct: 343 VNAAMKQLAATGFMSNRSRQLVASCFVHELQLDWRYGAAYFEEVLIDFDVASNYGNWQYL 402
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
AGVG+DPR R F++ KQ + YD +G +++ W
Sbjct: 403 AGVGSDPRGHRQFNLAKQTEIYDPKGAFISKW 434
>gi|365092849|ref|ZP_09329929.1| DNA photolyase, FAD-binding protein [Acidovorax sp. NO-1]
gi|363415035|gb|EHL22170.1| DNA photolyase, FAD-binding protein [Acidovorax sp. NO-1]
Length = 438
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 173/456 (37%), Positives = 242/456 (53%), Gaps = 46/456 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDS-SEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFRNDLR+ D AL A S + +LPV C+ T + GF + G R
Sbjct: 5 LFWFRNDLRLHDQPALHAALASGATHLLPVVCLPAADEPTPW--GFARVGVHRRAVAAAA 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCS-EELNVERLVRKNL 201
L L +L G LLI P +P LA++ GA V + E+ V L L
Sbjct: 63 LRGLSASLSALGNPLLICQAPPVTALPQLAQAVGATTVVCEDIAVPYEQAEVAALRAAGL 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE-AKCTVRG 260
Q ++ +W +++ H D+P+ S LP V+T FR+ +E A T
Sbjct: 123 Q-----------------VRTVWHSSLLHPADMPWPASDLPGVFTSFRQKVERAGITPAA 165
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQL-------ELHSPKVSKGMRFV-----------GG 302
+ P+ PPP V P+++ + + P S+G G
Sbjct: 166 PLPAPTRLLPPPDV----PAPVLQAVGAKEGAVRIQQPAPSQGSDVRSSFPYGTPACDGS 221
Query: 303 ESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYER 362
E+AAL + +Y +K L YK TRN + G DYS+KFSPWLA+G++SPR IY ++K++E
Sbjct: 222 EAAALAHLAQYLARK-LPHSYKATRNGLTGLDYSSKFSPWLATGALSPRQIYADLKTFEC 280
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCT 422
+ AND TYW+ FEL+WRDYFR + L+YG +L+ G L + + + FE W G T
Sbjct: 281 DHGANDGTYWLWFELLWRDYFRLLHLQYGAALYRARGLSGLPHA-PHNPRGFERWCRGDT 339
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
G PL+DA M+EL+ TG++SNR RQ+A S+LV D+ DWR GA WFE+ L+DYD SN N
Sbjct: 340 GQPLVDAAMRELAATGYLSNRLRQVAASYLVYDLHSDWRAGAAWFESQLVDYDVYSNQAN 399
Query: 483 WTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
W Y AG G DPR R F+ KQ Q++D +G Y W
Sbjct: 400 WLYIAGRGTDPRGGRRFNPIKQTQDHDADGSYRRLW 435
>gi|410621443|ref|ZP_11332290.1| cryptochrome DASH [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410158958|dbj|GAC27664.1| cryptochrome DASH [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 439
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 161/446 (36%), Positives = 243/446 (54%), Gaps = 18/446 (4%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPK--TGALRA 136
K V + WFR DLR+ DN +L + + ++ VY P +Q + + K G R
Sbjct: 2 SKKVGLHWFRKDLRIQDNASLAELASQVDELVCVYVYQPEANQDSINELHKKESIGKHRL 61
Query: 137 QFLIECLADLRKNLMNRGLNLLI---RHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
F+ + L DL L + L++ P E I +L K+ + AQ C
Sbjct: 62 NFIHQTLHDLNSTLSDFNQRLIVLSTNKADPVEAILTLVKALNVTHLSAQWH-CGFN--- 117
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
ER + Q +V+ + N + + +T++++ PF ++P+ ++ FRK +E
Sbjct: 118 ERKEWQQTQDLVIEAGLN------IEFIQVNSSTLFNVSQFPFSIENMPNTFSPFRKKVE 171
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
C V+ I PS+ D ++ + L+ V+ R GGE+ A ++ Y
Sbjct: 172 KYCEVQA---INPVLNALPSIPDLFTIENVMDLDSLLVSVNHYQRLSGGENDAHQQLTHY 228
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
W D + YKETRN + G D+S+KFS WLA G ISPR IY E+ YE ERV N+STYW+
Sbjct: 229 LWSTDHISRYKETRNGLDGWDFSSKFSAWLALGCISPRQIYAELCRYESERVKNESTYWL 288
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR++F + +GN LF G ++L + D+K F W+ G TGYP++DA M++
Sbjct: 289 FFELLWREFFHWQHYVHGNRLFAASGVQRLVRPSNFDRKTFVQWQQGQTGYPIVDACMRQ 348
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L TG+MSNRGRQ+ S V ++G DWR GA++FE L+D+D SN+GNW Y GVG DP
Sbjct: 349 LLKTGYMSNRGRQLVASCFVHELGQDWRYGAKYFEYQLIDFDVASNWGNWQYLGGVGADP 408
Query: 494 REDRYFSIPKQAQNYDREGEYVAYWL 519
R R F++ KQA YD + +++ W+
Sbjct: 409 RGHRQFNLQKQAATYDPDNKFITQWM 434
>gi|424030869|ref|ZP_17770339.1| cryptochrome DASH [Vibrio cholerae HENC-01]
gi|408880647|gb|EKM19568.1| cryptochrome DASH [Vibrio cholerae HENC-01]
Length = 450
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 169/444 (38%), Positives = 235/444 (52%), Gaps = 34/444 (7%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP--RHSQTTYHFGFPKTGAL 134
K + + WF NDLR+ DN L KA + + ++ +YC V P H T FG PK
Sbjct: 3 KTIGLYWFTNDLRLHDNPNLAKAAEEVDFLICLYCYPKVSPFLAHYAQTSEFGQPKR--- 59
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
QFL E L L +L LL+ P + + K+ G +Y +E NV
Sbjct: 60 --QFLDESLHCLNLSLNALEQRLLVVDLHPYQALKHAFKNLGVTRLYVDAMPGCDEQNVI 117
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
++ + V + +++ L D+PF ++LPD +T FRK +E
Sbjct: 118 EEIKAEERHVTVVQHEV--------------RSLFRLADLPFSLNALPDTFTQFRKQVEK 163
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
+ R+ S+ P P + ++ L L K M F GGE A L YF
Sbjct: 164 LSISQPADRV-STLPPLPKGLSLPTLSLTRDL--------KPMPFAGGEHAGLEHCRRYF 214
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
L YK+TRN + G DYSTKFSPWLA G +S + I + +K YE + ANDSTYW+
Sbjct: 215 -DSPLASEYKQTRNGLDGMDYSTKFSPWLAHGCVSAKRIVDMLKRYEADYGANDSTYWIY 273
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
FEL+WR+YF + + +YG LFH GG R S F+ W+ G T +PL++A M +L
Sbjct: 274 FELLWREYFYWYARRYGRQLFHFGGIRNQTPLTSFYAHRFQQWKKGETPFPLVNACMHQL 333
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+MSNRGRQ+ S LV ++G+DWR GA +FE+ L+DYD SN+GNW Y AGVG DPR
Sbjct: 334 NETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGADPR 393
Query: 495 EDRYFSIPKQAQNYDREGEYVAYW 518
R F++ KQ Q YD E++ W
Sbjct: 394 GSRQFNLEKQTQMYDPNHEFIDKW 417
>gi|121727641|ref|ZP_01680744.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
gi|121630028|gb|EAX62435.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
Length = 462
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 238/445 (53%), Gaps = 35/445 (7%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNTLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLNHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVVGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V++ Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFPSVLIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
I P PP W +PL++ + P S F+GGE A L Y
Sbjct: 163 TLSLSSAPIGYPRVL--PPIEQGW-QLPLLDIVA--EPNHSA---FIGGEQAGLTHCQNY 214
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 215 F-SSMLPSCYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 273
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 274 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGVTPFPIVNACMRQ 333
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 334 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 393
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 394 RGSRQFNLEKQAHTYDPKGEFVAKW 418
>gi|424039979|ref|ZP_17778239.1| cryptochrome DASH [Vibrio cholerae HENC-02]
gi|408892368|gb|EKM29890.1| cryptochrome DASH [Vibrio cholerae HENC-02]
Length = 450
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 166/441 (37%), Positives = 238/441 (53%), Gaps = 28/441 (6%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFG-FPKTGALRAQF 138
K + + WF NDLR+ DN L KA + + ++ +YC P+ S H+ + G + QF
Sbjct: 3 KTIGLYWFTNDLRLHDNPNLAKAAEEVDFLICLYCY-PKVSPFLAHYAQTSELGQPKRQF 61
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK-ETCSEELNVERLV 197
L E L L +L LL+ P + + K+ G +Y C E+ +E++
Sbjct: 62 LDESLHCLNLSLNALEQRLLVVDLHPYQALKHALKNLGVTRLYVDAMPGCDEQSVIEKIK 121
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ V+ + +++ L D+PF ++LPD +T FRK +E K +
Sbjct: 122 AEERHVAVVQHEVR---------------SLFRLADLPFSLNALPDTFTQFRKQVE-KLS 165
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+ I S+F P P + ++ L L K M F GGE A L YF
Sbjct: 166 ISQPIDRVSTFPPLPKGLSLPTLSLTRDL--------KPMPFAGGEHAGLEHCRRYF-DS 216
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
L YK+TRN + G DYSTKFSPWLA G +S + I + +K YE + ANDSTYW+ FEL
Sbjct: 217 PLASEYKQTRNGLDGMDYSTKFSPWLAHGCVSAKRIVDMLKRYEADYGANDSTYWIYFEL 276
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR+YF + + +YG LFH G R S F+ W+ G T +PL++A M +L+ T
Sbjct: 277 LWREYFYWYARRYGRQLFHFDGIRNQTPLTSFYAHRFQQWKKGETPFPLVNACMHQLNET 336
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQ+ S LV ++G+DWR GA +FE+ L+DYD SN+GNW Y AGVG DPR R
Sbjct: 337 GYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGADPRGSR 396
Query: 498 YFSIPKQAQNYDREGEYVAYW 518
F++ KQ Q YD E++ W
Sbjct: 397 QFNLEKQTQMYDPNHEFIDKW 417
>gi|309779656|ref|ZP_07674415.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
gi|349616586|ref|ZP_08895723.1| DASH family cryptochrome [Ralstonia sp. 5_2_56FAA]
gi|308921597|gb|EFP67235.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
gi|348612231|gb|EGY61853.1| DASH family cryptochrome [Ralstonia sp. 5_2_56FAA]
Length = 476
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 166/460 (36%), Positives = 248/460 (53%), Gaps = 44/460 (9%)
Query: 77 RNGKGVAIVWFRNDLRVLDNEALLKAWDS-SEMVLPVYCVDPRHSQTTYHFGFPKTGALR 135
R + WFR+DLR+ D AL A ++ + ++PVYC +QT + GF + G R
Sbjct: 41 RTALNTVLFWFRSDLRLHDQPALRAACETGASHLVPVYCHADYEAQTPW--GFARVGVHR 98
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCS-EELNVE 194
L L DL + L + G L+ G P +++P+LA++ GA V + E+ V
Sbjct: 99 RAVLAAALRDLARQLADLGTRLVECCGPPGKVLPALARAVGASTVVCEDIAAPYEQAEVA 158
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
L LQ ++ +W +++ +P+ SLP V+T FR+++E
Sbjct: 159 ELRSAGLQ-----------------VQTVWQSSLIDPLCLPWPVQSLPAVFTTFRQALE- 200
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPK------VSKGMR---------F 299
R I + PP + W S +I L +P +S R F
Sbjct: 201 ----RARIAPSTPLSPPTRLPPWPSGVIIPP-GLRAPAYVANQTLSTDSRASFPYGTPEF 255
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
GGE+A L + +Y ++ L YK TRN + G D+S+K+SPWLA+G++SPR + E++
Sbjct: 256 DGGETAGLRHLAQYL-ERQLPHTYKRTRNALAGVDFSSKWSPWLATGALSPRRVISELQQ 314
Query: 360 YERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG-PRKLEYKWSQDQKLFESWR 418
+E+ +D +YW+ FEL+WRDYFRF+ L++G L+ G ++ + D + FE WR
Sbjct: 315 FEQSHGQSDGSYWLWFELLWRDYFRFLHLQHGARLYRARGLANEVRHAERPDVQGFERWR 374
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
TG PL+DA M+EL TG++SNR RQ+ S+LV ++G DWR GA WFE+ L+DYD S
Sbjct: 375 RASTGEPLVDAAMRELETTGYLSNRLRQVVASYLVHELGGDWRAGAAWFESQLVDYDVYS 434
Query: 479 NYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
N GNW Y AG G DPR R F++ KQA YD +G Y+ W
Sbjct: 435 NQGNWLYIAGRGTDPRGGRRFNVRKQAAEYDPDGSYLRLW 474
>gi|395760275|ref|ZP_10440944.1| cryptochrome, dash family protein [Janthinobacterium lividum PAMC
25724]
Length = 444
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 168/451 (37%), Positives = 234/451 (51%), Gaps = 30/451 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I WFRNDLR+ DN AL +A + +L VYC R + + P+T R FL L
Sbjct: 14 IYWFRNDLRLDDNPALRQACQRAGHLLFVYC--HRSASVATRWDVPRTSPHRQHFLRSGL 71
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADL L + G LL G P ++ +LA S GA ++ ++ EE +R
Sbjct: 72 ADLATQLASYGSQLLEVEGDPAHVLLALAHSIGATTIHCEEIAAPEEQGELAALRAAGLT 131
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV-RGCI 262
V + +W +++ +PF ++LP+V+T+FR +E + V +
Sbjct: 132 V----------------EALWQSSLLDPAALPFPCAALPEVFTNFRTLVERQQVVPTAPL 175
Query: 263 RIPSSFGP-PPSVVDWGSVPLIEQLELHSPKVSKGMR--------FVGGESAALGRVNEY 313
P++ P PP+ L ++ F GG +AA + +Y
Sbjct: 176 ARPTTIPPLPPAFAALAETWAAAPDALQDAHLATARSSFPYALPAFYGGPTAAAEHLRQY 235
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F +L YK +RN + G DYSTKFSPWLA G++S R + ++ +E AN STYW+
Sbjct: 236 F-AGELAHTYKLSRNGLTGVDYSTKFSPWLACGALSARMVCAALRQFEAAHGANASTYWI 294
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FELMWRDYFRF+ L++G +L+ G L S D FE+W T PL++A M E
Sbjct: 295 WFELMWRDYFRFLHLQHGVALYRAQGLSSLGQP-SHDAHRFEAWCQARTREPLVNAGMAE 353
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
LS TG++SNR RQI S+LV D+G DWR GA WFE L+DYD SN GNW Y AG G DP
Sbjct: 354 LSTTGYLSNRLRQIVASYLVHDLGCDWRAGAAWFEAQLIDYDVYSNQGNWLYLAGRGTDP 413
Query: 494 REDRYFSIPKQAQNYDREGEYVAYWLPQLKA 524
R R F++ KQ + +D +G Y W Q A
Sbjct: 414 RNGRRFNLQKQTREHDPDGAYRRLWATQGTA 444
>gi|300778230|ref|ZP_07088088.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
gi|300503740|gb|EFK34880.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
Length = 432
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 236/442 (53%), Gaps = 18/442 (4%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
+ + I+WF DLR D+E+L L V+ D FGF K G RA+FL
Sbjct: 5 QKINILWFTKDLRTRDSESLYNIMQEDLPFLAVFVFDSDLFAQK-QFGFRKIGKYRARFL 63
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+E + DL++ L + + LL+R K E + +AK F ++ Q+E EE +++ +RK
Sbjct: 64 LESIEDLKQRLAKKNIPLLVRQNKTENVFEEIAKEFEIVKIFCQQEWTKEETDLQTKIRK 123
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+ +S + HP LD IP D++T FR IE +R
Sbjct: 124 TVP-YAFWEKSYSQFLLHPFF------VCKVLDKIP-------DLFTTFRNKIEKNLLIR 169
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQL--ELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+ + L E F GGE+ L R++ YF +
Sbjct: 170 PEFETEQLICYKSEIHFESDKITLRSLGFEDFDTDARSAFPFPGGETEGLRRLHSYFPET 229
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
L YKETRN ++G +YS+KFSPWL+ GS+S IY E+K +E++ +N+STYW+ FEL
Sbjct: 230 QHLSRYKETRNGLVGTEYSSKFSPWLSCGSLSAVTIYHEIKRFEKKFGSNESTYWLFFEL 289
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRD+FR++SL++ + +F G +Y S Q+L W++G T ++ANM EL T
Sbjct: 290 LWRDFFRYVSLQHKDLIFRKKGITHRQYSASHHQELIRKWKNGETTSDFVNANMIELQKT 349
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQ A S+ + + DWR+GA +FE L+DYD SNYGNW Y AGVGND R +R
Sbjct: 350 GWMSNRGRQNAASYFCKTLNQDWRIGAAYFEEMLIDYDVHSNYGNWMYLAGVGNDSR-NR 408
Query: 498 YFSIPKQAQNYDREGEYVAYWL 519
F+ +QA+ YD + E+ WL
Sbjct: 409 TFNPERQAELYDPKQEFRRLWL 430
>gi|333893078|ref|YP_004466953.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2]
gi|332993096|gb|AEF03151.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2]
Length = 437
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 163/444 (36%), Positives = 241/444 (54%), Gaps = 31/444 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR+DLR D AL + + +Y +D +G G R FLI+
Sbjct: 17 GLFWFRHDLRFHDQVALSSLCQQVDELTLLYIIDDSWFVPN-SYGIQPVGEHRFNFLIDT 75
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG-AHAVYAQKETCSEELNVERLVRKNL 201
+ L + G ++L G+ E++ SL S H + +E VE + R
Sbjct: 76 IEALNEKASTLGHSILTLRGQTPELLVSLLSSNAFTHFGVTEHGGYNERREVEAVSRF-- 133
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWG--TTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
P ++++ G +++++ DD+PF+ +PDV+T F++ IE+ R
Sbjct: 134 ---------------FPNIEIVTGESSSLFNQDDLPFNLEVMPDVFTPFKRKIESAIKPR 178
Query: 260 ----GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+P S+ P +D L P+ FVGGE A L +N Y +
Sbjct: 179 EPMATLTALPRSYTPD---ID---AECQYTLNRRPPRNQAEGTFVGGEDAVLSHLNSYLF 232
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ + YKETRN + STK SPWLA+G++S RY+ +EVK YE+ V NDSTYW+ F
Sbjct: 233 EWKVAASYKETRNALDNWRDSTKLSPWLATGALSARYVIQEVKKYEQNVVKNDSTYWIYF 292
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WR+YF ++ K+G+ F L G + S D ++F W +G TGYP++DA M++L+
Sbjct: 293 ELLWREYFYWLQQKFGSKWFQLEGIKSKLPNTSHDPQVFVGWCNGQTGYPIVDACMRQLA 352
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG++SNRGRQ+ S LV ++ DWR GA WFE+ LLDYD SN+GNW Y AGVG DPRE
Sbjct: 353 STGYLSNRGRQLVASCLVNELRQDWRYGAAWFESQLLDYDVASNWGNWLYLAGVGTDPRE 412
Query: 496 DRYFSIPKQAQNYDREGEYVAYWL 519
+R F++ KQ + YD +GE+ A WL
Sbjct: 413 NRQFNLQKQTEIYDPKGEFCAKWL 436
>gi|297579336|ref|ZP_06941264.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
gi|297536930|gb|EFH75763.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
Length = 462
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 169/445 (37%), Positives = 237/445 (53%), Gaps = 35/445 (7%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLFPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
I P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 TLSLSSAPIGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FVGGEQAGLTHCQNY 214
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 215 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYTMLQRYEAVHGANDSTYWI 273
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 274 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGVTPFPIVNACMRQ 333
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 334 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 393
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 394 RGSRQFNLAKQAHTYDPKGEFVAKW 418
>gi|407683883|ref|YP_006799057.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
gi|407245494|gb|AFT74680.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
Length = 435
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/457 (36%), Positives = 246/457 (53%), Gaps = 38/457 (8%)
Query: 72 SKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPR-HSQTTYHFGFPK 130
SK + N +G + WFR+DLR+ DN A+ ++ + V +Y +D + + TTY GF
Sbjct: 8 SKRMNNNQRG--LYWFRHDLRLHDNAAISSLCEAVQQVTFLYILDDKAFTPTTY--GFAP 63
Query: 131 TGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCS-E 189
G R FL++ L DL++ L G +LLI G P E + L KS G ++ E C +
Sbjct: 64 MGKHRHTFLLQTLVDLKRQLAKLGHDLLIVKGDPAECLVQLMKS-GQYSHLGVSEHCGFD 122
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
E V++ V + P L T+ PF+ +PDV++ FR
Sbjct: 123 ERAQLNTVKRFFDSVTV--------IETPTFGLFDAQTL------PFNIKEMPDVFSPFR 168
Query: 250 KSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQ-------LELHSPKVSKGMRFVGG 302
+ +E C P S PP + P +++ +L SP S FVGG
Sbjct: 169 RKVEKHCK-------PLSVHPPMESLPSPFTPQLDESFLFAIDTDLPSPSQSS---FVGG 218
Query: 303 ESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYER 362
E+AAL +N Y + YK+TRN + STK S WLA+GS+S R + +V+ +E
Sbjct: 219 ETAALTHLNTYLFDWKAAATYKDTRNALDTWQDSTKLSAWLANGSLSAREVIRQVQQFEA 278
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCT 422
NDSTYW+ FEL+WR++F ++ KYG + F GG + + + F W +G T
Sbjct: 279 TVEKNDSTYWIYFELLWREFFHWLQCKYGANWFRFGGIQGKKPSTQHCPETFALWCEGKT 338
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
GYP++DA M++L+ TG+MSNRGRQ+ S VR++ DWR GA WFE L+DYD SN+GN
Sbjct: 339 GYPIVDACMRQLAETGYMSNRGRQLVASCFVRELRQDWRYGAAWFEHQLIDYDVGSNWGN 398
Query: 483 WTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWL 519
W Y AGVG+DPR R F++ KQ + YD +G++ WL
Sbjct: 399 WLYLAGVGSDPRGHRQFNLQKQTEIYDSDGQFRKKWL 435
>gi|153800458|ref|ZP_01955044.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
gi|124124084|gb|EAY42827.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
Length = 462
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/445 (37%), Positives = 237/445 (53%), Gaps = 35/445 (7%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEVTDIYVDAMAGSDERQS 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IAHIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
I P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 TLSLSSAPIGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FVGGEQAGLTHCQHY 214
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 215 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 273
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 274 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQ 333
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 334 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADP 393
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 394 RGSRQFNLAKQAHTYDPKGEFVAKW 418
>gi|409195416|ref|ZP_11224079.1| DASH family cryptochrome [Marinilabilia salmonicolor JCM 21150]
Length = 433
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/450 (35%), Positives = 233/450 (51%), Gaps = 46/450 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTY-HFGFPKTGALRAQFLIEC 142
I WFRNDLR+ DN AL A V+P++ D +T++ FP+TG R QFL E
Sbjct: 14 IYWFRNDLRIHDNPALTMALSEGNPVIPIFIADNIWFETSHPELNFPRTGLFRKQFLAES 73
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LADL K L L I G +I+ L + + AQ+E EE +E+ V +++
Sbjct: 74 LADLDKTLKKFDRTLYIFKGDTAKILKKLVAHTKSSKIVAQREIADEEATIEQRVSRDMH 133
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
L+L WG+ +Y D I F P YT F+ + ++ +
Sbjct: 134 -----------------LELHWGSMLYQPDQIDFPVEKSPFYYTRFKNKVLSQAFTPSPM 176
Query: 263 RIP--------SSFGPPPSVV-----DWGSVPLIEQLELHSPKVSKGMRFVGGESAALGR 309
P S PP + +W LI + KG F GGE+ AL R
Sbjct: 177 HSPAKKELQLLSKISLPPDLTKLNPDEW----LISK---------KGTFFHGGETNALQR 223
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ EYF Y ETRN+ G ++S+ +PWLA+GS+SPR Y+ ++ ++ N
Sbjct: 224 MEEYF-NSGGAAHYSETRNQFEGTNFSSFLAPWLANGSLSPRIFYQHLQKAKKGHSENAE 282
Query: 370 TYWVLFE-LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
++ L E L+WRD FRF+ L+YGN F G RK ++ D + FE W+ G TG P+ID
Sbjct: 283 SFNTLTEQLIWRDNFRFLFLRYGNKFFSTNGLRKPPHRMYNDYEAFEMWKTGKTGQPIID 342
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M EL+ TGFMSNRGR + +L +++ ++W+ GA WFE+ L+DYD SNYGNW Y +G
Sbjct: 343 ALMHELNETGFMSNRGRMLVSFYLAKELRVNWQWGAAWFESMLIDYDVYSNYGNWAYQSG 402
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
G D R +R F++ Q + +D G ++ W
Sbjct: 403 RGTDSRVNRKFNLETQTKKFDPRGSFIQKW 432
>gi|229515204|ref|ZP_04404664.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TMA 21]
gi|229347909|gb|EEO12868.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TMA 21]
Length = 462
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/445 (37%), Positives = 237/445 (53%), Gaps = 35/445 (7%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTLLLPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFAIEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
I P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 TLSLSSAPIGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FVGGEQAGLTHCQNY 214
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 215 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 273
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 274 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQ 333
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 334 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADP 393
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 394 RGSRQFNLAKQAHTYDPKGEFVAKW 418
>gi|393238519|gb|EJD46055.1| cryptochrome [Auricularia delicata TFB-10046 SS5]
Length = 469
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 166/470 (35%), Positives = 245/470 (52%), Gaps = 74/470 (15%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRH------------------- 119
+ + I FRNDLR+ DN L A + ++ +LP+YC DPR
Sbjct: 2 ARTIRIALFRNDLRIHDNPMLQAALNGADELLPLYCFDPRQVDLTALNGKTEELISGGPF 61
Query: 120 -SQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF--- 175
+ T+H G P+ + +FL+E + DL+ +L LL+R G P++II L +
Sbjct: 62 DAARTWHLGLPRNQKFKLKFLVESVLDLQHDLRRLKSELLVRFGAPDQIIDKLVEHLRQG 121
Query: 176 ---GAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLD 232
G ++ Q+E EE VE ++K + L+ G+TM H
Sbjct: 122 APDGNVELFCQREQTFEETRVEEALKKF--NLTLTDG---------------GSTMVHPG 164
Query: 233 DIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPK 292
D+PF P V+T FRK +E +R +R + G+ + L +P
Sbjct: 165 DLPFAPKDCPAVFTSFRKKVEG---LRPMVRDLLPTPTSLPPLPSGARDFM--LSHDAPS 219
Query: 293 VSKGMR-------------FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKF 339
+ + + + GG S+ + R+ Y L YK+TRN + G D S+ F
Sbjct: 220 ILRSIADLDASFDPRSTTAYCGGASSGIERLKHYCSPPGPLFTYKKTRNALSGRDGSSHF 279
Query: 340 SPWLASGSISPRYIYEEVKSYE--RERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHL 397
SP+L+ G++S R I+ V+ E R+ N+ +YW++FEL+WRDY++F++
Sbjct: 280 SPFLSVGALSARQIFWAVRDAEDTRDGGGNEDSYWLIFELLWRDYWKFLAR--------- 330
Query: 398 GGPRKLEYKWS-QDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDM 456
GP + ++ QD+ FE W++G TG P IDANM+EL+ TG+MSNRGRQ +FL M
Sbjct: 331 -GPMDKDKLFALQDEAAFERWKEGKTGIPFIDANMRELAATGYMSNRGRQNVANFLAGQM 389
Query: 457 GIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQ 506
+DWRMGAEWFE+CL+D+D CSNYGNWTY AGVG DPR R F+I KQA
Sbjct: 390 CMDWRMGAEWFESCLVDHDVCSNYGNWTYTAGVGTDPRAGRNFNILKQAH 439
>gi|153214304|ref|ZP_01949321.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
gi|124115452|gb|EAY34272.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
Length = 462
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/445 (37%), Positives = 237/445 (53%), Gaps = 35/445 (7%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
I P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 TLSLSSAPIGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FVGGEQAGLTHCQNY 214
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 215 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 273
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 274 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQ 333
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 334 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADP 393
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 394 RGSRQFNLEKQAHTYDPKGEFVAKW 418
>gi|229529162|ref|ZP_04418552.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 12129(1)]
gi|229332936|gb|EEN98422.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 12129(1)]
Length = 461
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 239/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSCVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S F+GGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLLDIVA--EPNHSA---FIGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSMLPSCYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGVTPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD EGE+VA W
Sbjct: 393 RGSRRFNLEKQAHTYDPEGEFVAKW 417
>gi|424659531|ref|ZP_18096780.1| cryptochrome DASH [Vibrio cholerae HE-16]
gi|408052086|gb|EKG87145.1| cryptochrome DASH [Vibrio cholerae HE-16]
Length = 462
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 236/445 (53%), Gaps = 35/445 (7%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
I P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 TLSLSSAPIGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FVGGEQAGLTHCQNY 214
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 215 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 273
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 274 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGVTPFPIVNACMRQ 333
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 334 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 393
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQ YD +GE+VA W
Sbjct: 394 RGSRQFNLEKQTHTYDPKGEFVAKW 418
>gi|358451749|ref|ZP_09162182.1| DNA photolyase FAD-binding subunit [Marinobacter manganoxydans
MnI7-9]
gi|357224218|gb|EHJ02750.1| DNA photolyase FAD-binding subunit [Marinobacter manganoxydans
MnI7-9]
Length = 440
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 161/444 (36%), Positives = 242/444 (54%), Gaps = 34/444 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL---RAQFL 139
+ WF DLR+ DN +LL A S+M+L +Y VDPR + G ++ A+ R +FL
Sbjct: 3 TLYWFTRDLRLHDNASLLAA-SKSDMLLCLYVVDPRW----FAPGPLQSKAMGDHRWRFL 57
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+ L L ++L G L I G+PE +IP LA + V + ++E + ++
Sbjct: 58 WQSLMALERSLRTLGQRLHIAFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIKD 117
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA---KC 256
L + V Q + + +++ +P LPD ++ FRK +E +C
Sbjct: 118 RLPKAVFQ-----------QFETL---SLFTEGSLPMALGELPDTFSQFRKQVEKTGDRC 163
Query: 257 TVRGCIRIPSSFGPPPSVVD--WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
+ R IR ++ PPP + G P I P+ ++F+GGE+A L R+ E+
Sbjct: 164 SERLRIRTLTALPPPPGFPEDNRGDCPPI-------PEPVHPLQFMGGEAAGLARLQEFL 216
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
+ + YKETRN + D S+KFSPWLA+G +S R + E + YE N+STYW+
Sbjct: 217 YDNHSIDRYKETRNALDTWDASSKFSPWLANGCLSVREVAETITEYEASETKNESTYWLW 276
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
FEL+WR+YF + +LK+G +LF G ++ + F++W G T YP+++A M +L
Sbjct: 277 FELLWREYFYWYALKHGANLFRRDGVQRKRRHGTLYGHRFKAWCQGNTEYPIVNAAMNQL 336
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
TG+MSNR RQ+ S + ++G+DWR GA WFE L+DYD SNYGNW Y AGVG DPR
Sbjct: 337 RETGYMSNRARQLVASCFINELGLDWRYGAAWFEEQLIDYDVGSNYGNWQYLAGVGADPR 396
Query: 495 EDRYFSIPKQAQNYDREGEYVAYW 518
R F++ KQ Q YD G ++ W
Sbjct: 397 GLRQFNLEKQTQQYDPTGTFIDRW 420
>gi|261211882|ref|ZP_05926169.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
RC341]
gi|260839232|gb|EEX65864.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
RC341]
Length = 461
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 239/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALRSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL+ + P S F+GGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLMGIVT--EPNHSA---FIGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LFH G + + S + F W+ G T P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFHFSGIGEKQPLTSFYAQRFLQWKHGETPVPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R+ R F++ KQA YD +GE+VA W
Sbjct: 393 RDSRQFNLAKQAHTYDPKGEFVAKW 417
>gi|384424820|ref|YP_005634178.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio
cholerae LMA3984-4]
gi|327484373|gb|AEA78780.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio
cholerae LMA3984-4]
Length = 462
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 169/445 (37%), Positives = 237/445 (53%), Gaps = 35/445 (7%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
I P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 TLSLSSAPIGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FVGGEQAGLTHCQNY 214
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 215 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAILQRYEAVHGANDSTYWI 273
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 274 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKLGDTPFPIVNACMRQ 333
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 334 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADP 393
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 394 RGSRQFNLEKQAHTYDPKGEFVAKW 418
>gi|254285235|ref|ZP_04960200.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
gi|421351561|ref|ZP_15801926.1| cryptochrome DASH [Vibrio cholerae HE-25]
gi|150424507|gb|EDN16443.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
gi|395952006|gb|EJH62620.1| cryptochrome DASH [Vibrio cholerae HE-25]
Length = 461
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 239/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FVGGEQAGLTHCQHY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGVTPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 393 RGSRQFNLEKQAHTYDPKGEFVAKW 417
>gi|424591481|ref|ZP_18030908.1| cryptochrome DASH [Vibrio cholerae CP1037(10)]
gi|408031556|gb|EKG68172.1| cryptochrome DASH [Vibrio cholerae CP1037(10)]
Length = 461
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 167/445 (37%), Positives = 237/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVD------PRHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITQFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPMYQGW-QLPLMDIVT--EPNHSA---FVGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGVTPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 393 RGSRQFNLEKQAHTYDPKGEFVAKW 417
>gi|429886464|ref|ZP_19368021.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae PS15]
gi|429226656|gb|EKY32741.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae PS15]
Length = 461
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 239/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ + + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSLHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPLEQGW-QLPLMDIVT--EPNHSA---FVGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSLLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGVTPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET LLDYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLLDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 393 RGSRQFNLAKQAHTYDPKGEFVAKW 417
>gi|254224954|ref|ZP_04918569.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
gi|125622642|gb|EAZ50961.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
Length = 461
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 167/445 (37%), Positives = 239/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S F+GGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FIGGEQAGLTHCQHY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSMLPSCYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 393 RGSRQFNLAKQAHTYDPKGEFVAKW 417
>gi|422910818|ref|ZP_16945448.1| cryptochrome DASH [Vibrio cholerae HE-09]
gi|341632989|gb|EGS57838.1| cryptochrome DASH [Vibrio cholerae HE-09]
Length = 462
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 236/445 (53%), Gaps = 35/445 (7%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQAAQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
I P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 TLSLSSAPIGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FVGGEQAGLTHCQNY 214
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 215 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 273
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 274 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQ 333
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 334 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 393
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+V W
Sbjct: 394 RGSRQFNLAKQAHTYDPKGEFVDKW 418
>gi|406596892|ref|YP_006748022.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
gi|406374213|gb|AFS37468.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
Length = 435
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 165/453 (36%), Positives = 241/453 (53%), Gaps = 36/453 (7%)
Query: 76 KRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPR-HSQTTYHFGFPKTGAL 134
+ N + WFR+DLR+ DN A+ ++ + V +Y +D + + TTY GF G
Sbjct: 10 RTNNNQRGLYWFRHDLRLHDNAAISALCEAVQQVTFLYILDDKAFTPTTY--GFAPMGKH 67
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCS-EELNV 193
R FL++ L DL++ L G +LLI G P E + L KS G ++ E C +E
Sbjct: 68 RHTFLLQTLVDLKRQLAKLGHDLLIVKGDPAECLVQLMKS-GQYSHLGVSEHCGFDERAQ 126
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
V++ V + P L T+ PF+ +PDV++ FR+ +E
Sbjct: 127 LNAVKRFFDSVTV--------IETPTFGLFDAQTL------PFNIEEMPDVFSPFRRKVE 172
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQ-------LELHSPKVSKGMRFVGGESAA 306
C P S PP + P +++ +L SP S FVGGE+AA
Sbjct: 173 KHCK-------PLSVHPPMDSLPSPFTPQLDESFLFAIDTDLPSPSQSS---FVGGETAA 222
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
L +N Y + YK+TRN + STK S WLA+GS+S R + +V+ +E
Sbjct: 223 LTHLNTYLFDWKAAATYKDTRNALDTWQDSTKLSAWLANGSLSAREVIRQVQQFEATVEK 282
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
NDSTYW+ FEL+WR++F ++ KYG + F GG + + + F W +G TGYP+
Sbjct: 283 NDSTYWIYFELLWREFFHWLQCKYGANWFRFGGIQGKKPSTQHCPETFALWCEGKTGYPI 342
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ TG+MSNRGRQ+ S V ++ DWR GA WFE L+DYD SN+GNW Y
Sbjct: 343 VDACMRQLAETGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYDVGSNWGNWLYL 402
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWL 519
AGVG+DPR R F++ KQ + YD +G++ WL
Sbjct: 403 AGVGSDPRGHRQFNLQKQTEIYDSDGQFCKKWL 435
>gi|262191004|ref|ZP_06049214.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae CT 5369-93]
gi|262033105|gb|EEY51633.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae CT 5369-93]
Length = 461
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 167/445 (37%), Positives = 239/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQT 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S F+GGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FIGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGVTPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 393 RGSRQFNLEKQAHTYDPKGEFVAKW 417
>gi|387812715|ref|YP_005428192.1| Deoxyribodipyrimidine photolyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381337722|emb|CCG93769.1| Deoxyribodipyrimidine photolyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 440
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 168/443 (37%), Positives = 241/443 (54%), Gaps = 35/443 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ WF DLR+ DN ALL A S+M+L V+ VDPR T F G R +FL + L
Sbjct: 4 LYWFTRDLRLHDNPALLAA-ARSDMLLCVFVVDPRWF-TGDRFQCRALGDHRWRFLWQSL 61
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L ++L G + I G+PE ++P LA+ G V+RL+R L
Sbjct: 62 MALERSLRPLGQRMHIAWGEPEIVLPELAREHG----------------VQRLIRSRLPG 105
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTT--MYHLDDIPFDHSSLPDVYTHFRKSIEAK----CT 257
++Q P++ T M+ +P + + LPD ++ FRK +E T
Sbjct: 106 TEEAAQWQALKARLPEVTFQQFETLGMFTEGQLPMELAELPDTFSQFRKQVEKAEQPDYT 165
Query: 258 VRGCIRIPSSFGPPPSVVD--WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+R IR S+ PPP + G P I + SP F GGE A L ++ + +
Sbjct: 166 LR--IRTVSALPPPPGFPEDNRGQCPPIPEPIHRSP-------FTGGEEAGLAQLQAFVF 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ + YKETRN + D S+KFSPWLA+G +S R + ++ YER+ NDSTYW+ F
Sbjct: 217 GQHRIADYKETRNALDDWDSSSKFSPWLANGCLSVREVVAAIEQYERQHTRNDSTYWLWF 276
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WR+YF + +LK+G LF G ++ + F++W +G T YP+++A M +L
Sbjct: 277 ELLWREYFYWYALKHGGRLFSRDGVQRKRRPVTFYGHRFKAWCEGNTQYPIVNAAMNQLR 336
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG++SNR RQ+ S L+ ++ +DWR GA WFE L+DYD SNYGNW Y AGVG DPR
Sbjct: 337 ETGYISNRARQLVASCLINELELDWRYGAAWFEQQLVDYDVASNYGNWQYLAGVGADPRG 396
Query: 496 DRYFSIPKQAQNYDREGEYVAYW 518
R F++ KQAQ YD +G +V W
Sbjct: 397 LRQFNLDKQAQQYDPDGAFVHRW 419
>gi|120553261|ref|YP_957612.1| DNA photolyase FAD-binding subunit [Marinobacter aquaeolei VT8]
gi|120323110|gb|ABM17425.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Marinobacter aquaeolei VT8]
Length = 440
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 169/443 (38%), Positives = 240/443 (54%), Gaps = 35/443 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ WF DLR+ DN ALL A S+M+L V+ VDPR T F G R +FL + L
Sbjct: 4 LYWFTRDLRLHDNPALLAA-ARSDMLLCVFVVDPRWF-TGDRFQCRALGDHRWRFLWQSL 61
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L ++L G L I G+PE ++P LA+ G V+RL+R L
Sbjct: 62 MALERSLRPMGQRLHIAWGEPEVVLPELAREHG----------------VQRLIRSRLPG 105
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTT--MYHLDDIPFDHSSLPDVYTHFRKSIEAK----CT 257
++Q T P++ T M+ +P + + LPD ++ FRK +E T
Sbjct: 106 TEEAAQWQALKTRLPEVTFQQFETLGMFAEGQLPMELAELPDTFSQFRKQVEKAEQPDHT 165
Query: 258 VRGCIRIPSSFGPPPSVVD--WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+R IR S+ PPP + G P I + SP F GGE A L ++ + +
Sbjct: 166 LR--IRTVSALPPPPGFPEDNRGQCPPIPEPIHRSP-------FTGGEEAGLAQLQAFVF 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ + YKETRN + S+KFSPWLA+G +S R + ++ YER+ NDSTYW+ F
Sbjct: 217 GQHRIANYKETRNALDDWGSSSKFSPWLANGCLSAREVVAAIEQYERQHTRNDSTYWLWF 276
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WR+YF + +LK+G LF G ++ + F++W +G T YP+++A M +L
Sbjct: 277 ELLWREYFYWYALKHGGRLFSRDGVQRKRRPVTFYGHRFKAWCEGNTQYPIVNAAMNQLR 336
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG++SNR RQ+ S L+ ++ +DWR GA WFE L+DYD SNYGNW Y AGVG DPR
Sbjct: 337 ETGYISNRARQLVASCLINELELDWRYGAAWFEQQLVDYDVASNYGNWQYLAGVGADPRG 396
Query: 496 DRYFSIPKQAQNYDREGEYVAYW 518
R F++ KQAQ YD E +V W
Sbjct: 397 LRQFNLDKQAQQYDPEEAFVHRW 419
>gi|409101128|ref|ZP_11221152.1| DASH family cryptochrome [Pedobacter agri PB92]
Length = 463
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 168/444 (37%), Positives = 244/444 (54%), Gaps = 24/444 (5%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
K +VWF+NDLR+ DNEAL+ A ++ YC++ ++ GF K +R +FL
Sbjct: 2 KKRGLVWFKNDLRLHDNEALVMAQQECADLVFCYCIE-KNGFEKLALGFRKADIIRFKFL 60
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+ + DLRKNL + G +L+I + IP L K +G VYA++E SEELN+ R V
Sbjct: 61 KQAVLDLRKNLTSLGAHLIIGEASALKTIPELVKQYGITDVYAEEEYASEELNLLRSVTD 120
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L +T H WG T+YH DDIPF+ ++P +R + T R
Sbjct: 121 VLPA----------TTFH----FYWGKTLYHKDDIPFNIKNIPLTSKAYRIPASKESTPR 166
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV-GGESAALGRVNEYFWKKD 318
IP++ V P + K FV GGE+ AL R+ Y +K +
Sbjct: 167 KTFDIPTNLNAVKQVKT-HRFPAYSMYGFSKNEYEKAKPFVAGGETEALKRLEYYTFKSE 225
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
LL Y+ +RN+ G DYS+KFSP+LA G IS R IYE+V +YE + N ST+W++FEL+
Sbjct: 226 LLTGYRWSRNQSDGLDYSSKFSPYLALGCISAREIYEKVMAYETKVKKNQSTWWLVFELV 285
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRDYF F ++++GN +F G + W D FE W +G TG P +DA+M++L+ TG
Sbjct: 286 WRDYFTFKAMRFGNRIFQSKGYKNKNPDWENDPVKFEKWCNGTTGIPFVDAHMRQLNQTG 345
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGR S+LV D+ IDW GA +FE+ L+DYD SN+ NW A + +
Sbjct: 346 YMSNRGRVNCSSYLVHDLKIDWTWGAAYFESRLIDYDVTSNWMNWHMQAF-------EIW 398
Query: 499 FSIPKQAQNYDREGEYVAYWLPQL 522
++ P N + E++ W+P+L
Sbjct: 399 YTNPVHQSNKYKAQEFIRKWIPEL 422
>gi|269961334|ref|ZP_06175699.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269833885|gb|EEZ87979.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 462
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 165/446 (36%), Positives = 241/446 (54%), Gaps = 38/446 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
K + + WF NDLR+ DN LL+A ++++ +YC S + P+ G + QFL
Sbjct: 15 KTIGLYWFTNDLRLHDNPLLLRASAEVDLLICIYCYPKVSSYLKQYAQEPEFGFAKQQFL 74
Query: 140 IECL--ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
E L +L N +N+ L ++ H P + I A G +YA S+E
Sbjct: 75 DESLHCLNLSLNALNQRLQVVDLH--PYQAIKHAADKLGVTHLYADAVAGSDE------- 125
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGT--TMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
Q VV + Q+ P L +I +++ ++D+PF+ +LPD +T FRK +E
Sbjct: 126 ----QDVVDNIQAEA-----PHLAVIQSEVRSLFCVEDLPFELEALPDTFTKFRKKVEKL 176
Query: 256 CT---VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
V R+P+ + D ++P + P + F GGE A L +
Sbjct: 177 ALAEPVEAVTRLPA-------LPDGLALPTLSLTRDVQPSL-----FTGGERAGLEHCRQ 224
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
YF L YK+TRN + G DYSTKFSPWLA G +SP+ IY +K YE ANDSTYW
Sbjct: 225 YF-ASTLASEYKQTRNGLDGMDYSTKFSPWLAHGCLSPKTIYAMLKRYEAANGANDSTYW 283
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
+ FEL+WR+YF + + +Y LF GG + S F+ W+ G T +P+++A M
Sbjct: 284 IYFELLWREYFYWYARRYKRQLFRFGGIQNQAPLTSFYAHRFQQWKKGETPFPIVNACMH 343
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+MSNRGRQ+ S LV ++G++WR GA +FE+ L+DYD SN+GNW Y AGVG D
Sbjct: 344 QLNETGYMSNRGRQLVASCLVHELGLEWRYGAAYFESQLVDYDVASNWGNWQYLAGVGAD 403
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYW 518
PR R F++ KQ + YD E++ W
Sbjct: 404 PRGSRQFNLEKQTEMYDPHMEFIDRW 429
>gi|15641816|ref|NP_231448.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121585836|ref|ZP_01675630.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
gi|147674040|ref|YP_001217353.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
gi|153817785|ref|ZP_01970452.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
gi|153821143|ref|ZP_01973810.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
gi|227081943|ref|YP_002810494.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|227118263|ref|YP_002820159.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|229508087|ref|ZP_04397592.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae BX 330286]
gi|229511674|ref|ZP_04401153.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae B33]
gi|229518813|ref|ZP_04408256.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC9]
gi|229607648|ref|YP_002878296.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae MJ-1236]
gi|254848903|ref|ZP_05238253.1| cryptochrome DASH [Vibrio cholerae MO10]
gi|255745421|ref|ZP_05419370.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholera CIRS 101]
gi|262169806|ref|ZP_06037497.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC27]
gi|360035700|ref|YP_004937463.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O1 str. 2010EL-1786]
gi|417813861|ref|ZP_12460514.1| cryptochrome DASH [Vibrio cholerae HC-49A2]
gi|417817599|ref|ZP_12464228.1| cryptochrome DASH [Vibrio cholerae HCUF01]
gi|418334835|ref|ZP_12943749.1| cryptochrome DASH [Vibrio cholerae HC-06A1]
gi|418338454|ref|ZP_12947348.1| cryptochrome DASH [Vibrio cholerae HC-23A1]
gi|418346371|ref|ZP_12951133.1| cryptochrome DASH [Vibrio cholerae HC-28A1]
gi|418350132|ref|ZP_12954863.1| cryptochrome DASH [Vibrio cholerae HC-43A1]
gi|418355774|ref|ZP_12958493.1| cryptochrome DASH [Vibrio cholerae HC-61A1]
gi|419826796|ref|ZP_14350295.1| cryptochrome, DASH family protein [Vibrio cholerae CP1033(6)]
gi|421317849|ref|ZP_15768417.1| cryptochrome DASH [Vibrio cholerae CP1032(5)]
gi|421321591|ref|ZP_15772144.1| cryptochrome DASH [Vibrio cholerae CP1038(11)]
gi|421325388|ref|ZP_15775912.1| cryptochrome DASH [Vibrio cholerae CP1041(14)]
gi|421329050|ref|ZP_15779560.1| cryptochrome DASH [Vibrio cholerae CP1042(15)]
gi|421336544|ref|ZP_15787005.1| cryptochrome DASH [Vibrio cholerae CP1048(21)]
gi|421339978|ref|ZP_15790410.1| cryptochrome DASH [Vibrio cholerae HC-20A2]
gi|421348128|ref|ZP_15798505.1| cryptochrome DASH [Vibrio cholerae HC-46A1]
gi|422896922|ref|ZP_16934375.1| cryptochrome DASH [Vibrio cholerae HC-40A1]
gi|422903121|ref|ZP_16938101.1| cryptochrome DASH [Vibrio cholerae HC-48A1]
gi|422907006|ref|ZP_16941813.1| cryptochrome DASH [Vibrio cholerae HC-70A1]
gi|422913856|ref|ZP_16948362.1| cryptochrome DASH [Vibrio cholerae HFU-02]
gi|422926062|ref|ZP_16959076.1| cryptochrome DASH [Vibrio cholerae HC-38A1]
gi|423145381|ref|ZP_17132975.1| cryptochrome DASH [Vibrio cholerae HC-19A1]
gi|423150057|ref|ZP_17137371.1| cryptochrome DASH [Vibrio cholerae HC-21A1]
gi|423153877|ref|ZP_17141058.1| cryptochrome DASH [Vibrio cholerae HC-22A1]
gi|423156960|ref|ZP_17144053.1| cryptochrome DASH [Vibrio cholerae HC-32A1]
gi|423160531|ref|ZP_17147471.1| cryptochrome DASH [Vibrio cholerae HC-33A2]
gi|423165349|ref|ZP_17152080.1| cryptochrome DASH [Vibrio cholerae HC-48B2]
gi|423731368|ref|ZP_17704671.1| cryptochrome, DASH family protein [Vibrio cholerae HC-17A1]
gi|423766383|ref|ZP_17712789.1| cryptochrome, DASH family protein [Vibrio cholerae HC-50A2]
gi|423895259|ref|ZP_17727006.1| cryptochrome, DASH family protein [Vibrio cholerae HC-62A1]
gi|423930697|ref|ZP_17731400.1| cryptochrome, DASH family protein [Vibrio cholerae HC-77A1]
gi|424002812|ref|ZP_17745887.1| cryptochrome DASH [Vibrio cholerae HC-17A2]
gi|424006601|ref|ZP_17749571.1| cryptochrome DASH [Vibrio cholerae HC-37A1]
gi|424024582|ref|ZP_17764233.1| cryptochrome DASH [Vibrio cholerae HC-62B1]
gi|424027467|ref|ZP_17767070.1| cryptochrome DASH [Vibrio cholerae HC-69A1]
gi|424586738|ref|ZP_18026317.1| cryptochrome DASH [Vibrio cholerae CP1030(3)]
gi|424595385|ref|ZP_18034706.1| cryptochrome DASH [Vibrio cholerae CP1040(13)]
gi|424606991|ref|ZP_18045935.1| cryptochrome DASH [Vibrio cholerae CP1050(23)]
gi|424610816|ref|ZP_18049655.1| cryptochrome DASH [Vibrio cholerae HC-39A1]
gi|424613626|ref|ZP_18052414.1| cryptochrome DASH [Vibrio cholerae HC-41A1]
gi|424617609|ref|ZP_18056281.1| cryptochrome DASH [Vibrio cholerae HC-42A1]
gi|424622387|ref|ZP_18060895.1| cryptochrome DASH [Vibrio cholerae HC-47A1]
gi|424645352|ref|ZP_18083088.1| cryptochrome DASH [Vibrio cholerae HC-56A2]
gi|424653119|ref|ZP_18090499.1| cryptochrome DASH [Vibrio cholerae HC-57A2]
gi|424656941|ref|ZP_18094226.1| cryptochrome DASH [Vibrio cholerae HC-81A2]
gi|440710021|ref|ZP_20890672.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 4260B]
gi|443504179|ref|ZP_21071137.1| cryptochrome DASH [Vibrio cholerae HC-64A1]
gi|443508076|ref|ZP_21074840.1| cryptochrome DASH [Vibrio cholerae HC-65A1]
gi|443511919|ref|ZP_21078557.1| cryptochrome DASH [Vibrio cholerae HC-67A1]
gi|443515477|ref|ZP_21081988.1| cryptochrome DASH [Vibrio cholerae HC-68A1]
gi|443519268|ref|ZP_21085665.1| cryptochrome DASH [Vibrio cholerae HC-71A1]
gi|443524161|ref|ZP_21090374.1| cryptochrome DASH [Vibrio cholerae HC-72A2]
gi|443531760|ref|ZP_21097774.1| cryptochrome DASH [Vibrio cholerae HC-7A1]
gi|443535556|ref|ZP_21101434.1| cryptochrome DASH [Vibrio cholerae HC-80A1]
gi|443539103|ref|ZP_21104957.1| cryptochrome DASH [Vibrio cholerae HC-81A1]
gi|449055752|ref|ZP_21734420.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae O1 str. Inaba G4222]
gi|81858080|sp|Q9KR33.1|CRYD_VIBCH RecName: Full=Cryptochrome DASH
gi|9656339|gb|AAF94962.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549974|gb|EAX59992.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
gi|126511605|gb|EAZ74199.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
gi|126521339|gb|EAZ78562.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
gi|146315923|gb|ABQ20462.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
gi|227009831|gb|ACP06043.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|227013713|gb|ACP09923.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|229343502|gb|EEO08477.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC9]
gi|229351639|gb|EEO16580.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae B33]
gi|229355592|gb|EEO20513.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae BX 330286]
gi|229370303|gb|ACQ60726.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae MJ-1236]
gi|254844608|gb|EET23022.1| cryptochrome DASH [Vibrio cholerae MO10]
gi|255737251|gb|EET92647.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholera CIRS 101]
gi|262022040|gb|EEY40750.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC27]
gi|340036347|gb|EGQ97323.1| cryptochrome DASH [Vibrio cholerae HC-49A2]
gi|340037322|gb|EGQ98297.1| cryptochrome DASH [Vibrio cholerae HCUF01]
gi|341621681|gb|EGS47418.1| cryptochrome DASH [Vibrio cholerae HC-70A1]
gi|341621766|gb|EGS47499.1| cryptochrome DASH [Vibrio cholerae HC-48A1]
gi|341622516|gb|EGS48170.1| cryptochrome DASH [Vibrio cholerae HC-40A1]
gi|341637517|gb|EGS62195.1| cryptochrome DASH [Vibrio cholerae HFU-02]
gi|341646268|gb|EGS70382.1| cryptochrome DASH [Vibrio cholerae HC-38A1]
gi|356417544|gb|EHH71159.1| cryptochrome DASH [Vibrio cholerae HC-06A1]
gi|356418417|gb|EHH72014.1| cryptochrome DASH [Vibrio cholerae HC-21A1]
gi|356422991|gb|EHH76452.1| cryptochrome DASH [Vibrio cholerae HC-19A1]
gi|356428437|gb|EHH81663.1| cryptochrome DASH [Vibrio cholerae HC-22A1]
gi|356430096|gb|EHH83305.1| cryptochrome DASH [Vibrio cholerae HC-23A1]
gi|356433450|gb|EHH86639.1| cryptochrome DASH [Vibrio cholerae HC-28A1]
gi|356440047|gb|EHH93008.1| cryptochrome DASH [Vibrio cholerae HC-32A1]
gi|356444628|gb|EHH97437.1| cryptochrome DASH [Vibrio cholerae HC-43A1]
gi|356445628|gb|EHH98430.1| cryptochrome DASH [Vibrio cholerae HC-33A2]
gi|356451161|gb|EHI03862.1| cryptochrome DASH [Vibrio cholerae HC-48B2]
gi|356452272|gb|EHI04951.1| cryptochrome DASH [Vibrio cholerae HC-61A1]
gi|356646854|gb|AET26909.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O1 str. 2010EL-1786]
gi|395916107|gb|EJH26937.1| cryptochrome DASH [Vibrio cholerae CP1032(5)]
gi|395917226|gb|EJH28054.1| cryptochrome DASH [Vibrio cholerae CP1041(14)]
gi|395918585|gb|EJH29409.1| cryptochrome DASH [Vibrio cholerae CP1038(11)]
gi|395927584|gb|EJH38347.1| cryptochrome DASH [Vibrio cholerae CP1042(15)]
gi|395931643|gb|EJH42387.1| cryptochrome DASH [Vibrio cholerae CP1048(21)]
gi|395939261|gb|EJH49943.1| cryptochrome DASH [Vibrio cholerae HC-20A2]
gi|395942707|gb|EJH53383.1| cryptochrome DASH [Vibrio cholerae HC-46A1]
gi|395959122|gb|EJH69569.1| cryptochrome DASH [Vibrio cholerae HC-56A2]
gi|395959778|gb|EJH70193.1| cryptochrome DASH [Vibrio cholerae HC-57A2]
gi|395962525|gb|EJH72821.1| cryptochrome DASH [Vibrio cholerae HC-42A1]
gi|395971040|gb|EJH80741.1| cryptochrome DASH [Vibrio cholerae HC-47A1]
gi|395973659|gb|EJH83213.1| cryptochrome DASH [Vibrio cholerae CP1030(3)]
gi|408007371|gb|EKG45449.1| cryptochrome DASH [Vibrio cholerae HC-39A1]
gi|408013336|gb|EKG51062.1| cryptochrome DASH [Vibrio cholerae HC-41A1]
gi|408032519|gb|EKG69101.1| cryptochrome DASH [Vibrio cholerae CP1040(13)]
gi|408043366|gb|EKG79364.1| cryptochrome DASH [Vibrio cholerae CP1050(23)]
gi|408053819|gb|EKG88818.1| cryptochrome DASH [Vibrio cholerae HC-81A2]
gi|408607586|gb|EKK80989.1| cryptochrome, DASH family protein [Vibrio cholerae CP1033(6)]
gi|408623990|gb|EKK96942.1| cryptochrome, DASH family protein [Vibrio cholerae HC-17A1]
gi|408634132|gb|EKL06401.1| cryptochrome, DASH family protein [Vibrio cholerae HC-50A2]
gi|408654129|gb|EKL25271.1| cryptochrome, DASH family protein [Vibrio cholerae HC-77A1]
gi|408655059|gb|EKL26184.1| cryptochrome, DASH family protein [Vibrio cholerae HC-62A1]
gi|408845209|gb|EKL85325.1| cryptochrome DASH [Vibrio cholerae HC-37A1]
gi|408845982|gb|EKL86094.1| cryptochrome DASH [Vibrio cholerae HC-17A2]
gi|408870230|gb|EKM09510.1| cryptochrome DASH [Vibrio cholerae HC-62B1]
gi|408878770|gb|EKM17763.1| cryptochrome DASH [Vibrio cholerae HC-69A1]
gi|439974244|gb|ELP50421.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 4260B]
gi|443431124|gb|ELS73676.1| cryptochrome DASH [Vibrio cholerae HC-64A1]
gi|443435282|gb|ELS81425.1| cryptochrome DASH [Vibrio cholerae HC-65A1]
gi|443438902|gb|ELS88617.1| cryptochrome DASH [Vibrio cholerae HC-67A1]
gi|443442887|gb|ELS96189.1| cryptochrome DASH [Vibrio cholerae HC-68A1]
gi|443447064|gb|ELT03719.1| cryptochrome DASH [Vibrio cholerae HC-71A1]
gi|443449495|gb|ELT09786.1| cryptochrome DASH [Vibrio cholerae HC-72A2]
gi|443457150|gb|ELT24547.1| cryptochrome DASH [Vibrio cholerae HC-7A1]
gi|443461096|gb|ELT32169.1| cryptochrome DASH [Vibrio cholerae HC-80A1]
gi|443465203|gb|ELT39863.1| cryptochrome DASH [Vibrio cholerae HC-81A1]
gi|448264791|gb|EMB02028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae O1 str. Inaba G4222]
Length = 461
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 168/448 (37%), Positives = 239/448 (53%), Gaps = 42/448 (9%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPP---PSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRV 310
I + + G P P + +PL++ + P S FVGGE A L
Sbjct: 163 T-------ISLSAPMGYPHVLPPIEQGWQLPLMDIVT--EPNHSA---FVGGEQAGLTHC 210
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
YF L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDST
Sbjct: 211 QNYF-SSLLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDST 269
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW+ FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A
Sbjct: 270 YWIFFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNAC 329
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG
Sbjct: 330 MRQLNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVG 389
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYW 518
DPR R F++ KQA YD +GE+VA W
Sbjct: 390 ADPRGSRQFNLEKQAHTYDPKGEFVAKW 417
>gi|385333757|ref|YP_005887708.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
gi|311696907|gb|ADP99780.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
Length = 440
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/441 (36%), Positives = 237/441 (53%), Gaps = 28/441 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WF DLR+ DN +LL A S+M+L +Y VDPR G R +FL +
Sbjct: 3 TLYWFTRDLRLHDNASLLAA-SKSDMLLCLYVVDPRWFAPG-PLQSKAMGDHRWRFLWQS 60
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L ++L G L I G+PE +IP LA + V + ++E + ++ L
Sbjct: 61 LMALERSLRPLGQRLHIAFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIKDRLP 120
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA---KCTVR 259
+ V Q + + +++ +P LPD ++ FRK +E +C+ R
Sbjct: 121 KAVFQ-----------QFETL---SLFTEGSLPMALEELPDTFSQFRKQVEKTGDRCSER 166
Query: 260 GCIRIPSSFGPPPSVVD--WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
IR ++ PPP + G P I P+ ++F+GGE+A L R+ E+ +
Sbjct: 167 LRIRTLTALPPPPGFPEDNRGDCPPI-------PEPVHPLQFMGGEAAGLARLQEFLYGN 219
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ YKETRN + D S+KFSPWLA+G +S R + E + YE N+STYW+ FEL
Sbjct: 220 HSIDRYKETRNALDTWDASSKFSPWLANGCLSVREVAETITEYEASETKNESTYWLWFEL 279
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR+YF + +LK+G +LF G ++ + F++W G T YP+++A M +L T
Sbjct: 280 LWREYFYWYALKHGANLFRRDGVQRKRRHGTFYGHRFKAWCQGNTEYPIVNAAMNQLRET 339
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNR RQ+ S + ++G+DWR GA WFE L+DYD SNYGNW Y AGVG DPR R
Sbjct: 340 GYMSNRARQLVASCFINELGLDWRYGAAWFEEQLIDYDVGSNYGNWQYLAGVGADPRGLR 399
Query: 498 YFSIPKQAQNYDREGEYVAYW 518
F++ KQ Q YD G ++ W
Sbjct: 400 QFNLEKQTQQYDPTGTFIDRW 420
>gi|153826234|ref|ZP_01978901.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
gi|417825035|ref|ZP_12471623.1| cryptochrome DASH [Vibrio cholerae HE48]
gi|149739999|gb|EDM54174.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
gi|340046520|gb|EGR07450.1| cryptochrome DASH [Vibrio cholerae HE48]
Length = 461
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 167/445 (37%), Positives = 239/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLLDIVT--EPNHSA---FVGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKLLTSFYAQRFLQWKHGETPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG +P
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGANP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 393 RGSRQFNLAKQAHTYDPKGEFVAKW 417
>gi|417821168|ref|ZP_12467782.1| cryptochrome DASH [Vibrio cholerae HE39]
gi|423956045|ref|ZP_17734884.1| cryptochrome, DASH family protein [Vibrio cholerae HE-40]
gi|423985115|ref|ZP_17738433.1| cryptochrome, DASH family protein [Vibrio cholerae HE-46]
gi|340038799|gb|EGQ99773.1| cryptochrome DASH [Vibrio cholerae HE39]
gi|408657960|gb|EKL29035.1| cryptochrome, DASH family protein [Vibrio cholerae HE-40]
gi|408664513|gb|EKL35347.1| cryptochrome, DASH family protein [Vibrio cholerae HE-46]
Length = 461
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 167/445 (37%), Positives = 239/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLSQVEVTDIYVDAMAGSDERQS 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S F+GGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FIGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGRGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 393 RGSRQFNLEKQAHTYDPKGEFVAKW 417
>gi|390955825|ref|YP_006419583.1| DASH family cryptochrome [Aequorivita sublithincola DSM 14238]
gi|390421811|gb|AFL82568.1| cryptochrome, DASH family [Aequorivita sublithincola DSM 14238]
Length = 474
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 168/455 (36%), Positives = 255/455 (56%), Gaps = 23/455 (5%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
K A++WF+NDLR+ DNEAL A + V+ +YC+D R ++ + GF K A RA FL
Sbjct: 8 KATALMWFKNDLRLHDNEALCNAIACNLPVIYLYCIDSRIFKSL-NLGFRKADANRAIFL 66
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+ L DL+ L G +L+I +G PE+II S ++ +YA++E EEL + + V K
Sbjct: 67 KQSLEDLQIKLEELGGHLIIEYGIPEDIIASYVTNYTVKQIYAEEEYAWEELQMMKKVEK 126
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+ L WG T+YH DDIPF+ S +P +R + TVR
Sbjct: 127 LIDGTA-------------SLTTFWGKTLYHKDDIPFEISKIPLTSKAYRIPTGNQSTVR 173
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV-GGESAALGRVNEYFWKKD 318
++ PS+ V P + L +S ++ + +V GGESA + R++ Y ++ +
Sbjct: 174 EPLKEPSNLNAYDEVKS-TEFPEFKILGFNSLEILEADPYVAGGESAGIDRLHYYTFETE 232
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L Y+ +RN+ LG DYS+KFSP+LA G +SPR+IY++VK YE N ST+W++FEL+
Sbjct: 233 QLTGYRWSRNKSLGMDYSSKFSPYLALGCVSPRFIYQQVKHYEEIVKKNQSTWWLVFELV 292
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRDYF F ++ GNS+F G K ++ + LF+ W G TG P +DA+M++L+ TG
Sbjct: 293 WRDYFTFKGMRIGNSIFKTKGFSKKTIEFENNIDLFKRWCWGTTGIPFVDAHMRQLNKTG 352
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
++SNRGR SFLV D +DW GA +FE+ L+DYD +N+ NW A E Y
Sbjct: 353 YISNRGRVNCASFLVHDYKVDWTWGAAYFESKLIDYDVSANWLNWHMQA------YEIWY 406
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+ Q+ Y + +++ W+P+L + P
Sbjct: 407 TNPIHQSLKY-KSKKFIQTWIPELSHIDDNHIYLP 440
>gi|153828573|ref|ZP_01981240.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
gi|148875968|gb|EDL74103.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
Length = 461
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 239/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQAAQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S FVGGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLMDIVA--EPNHSA---FVGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 393 RGSRQFNLEKQAHTYDPKGEFVAKW 417
>gi|448565273|ref|ZP_21636140.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
gi|445715017|gb|ELZ66773.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
Length = 300
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 166/246 (67%), Gaps = 2/246 (0%)
Query: 289 HSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSI 348
+P + F GGE+AA RV Y W DLL+ YKETRN +LG DYS+K SPWL G +
Sbjct: 27 RTPDDRGVLPFDGGETAAFDRVESYIWTGDLLREYKETRNGLLGADYSSKLSPWLNEGCL 86
Query: 349 SPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKW 407
SPRY+ EV YE RV NDSTYW++FEL WRD+F+F K+G+ F GG R + + W
Sbjct: 87 SPRYVKAEVDRYEDRRVENDSTYWLVFELRWRDFFQFQFAKHGSDFFRRGGIRERTDIDW 146
Query: 408 SQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWF 467
D+ FE W G TG P +DAN++EL+ TG+MSNRGRQ A SFL D+ +DWR GA +F
Sbjct: 147 RADETQFERWAAGETGIPFVDANIRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAYF 206
Query: 468 ETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
ET L+DYDP SNYGNW Y AGVGND R DR F + QA+ YD + EYV WLP+L ALP
Sbjct: 207 ETQLVDYDPASNYGNWAYIAGVGNDSR-DRSFDVRWQAKRYDEDAEYVKTWLPELDALPA 265
Query: 528 ERRNFP 533
E + P
Sbjct: 266 EYAHEP 271
>gi|387127435|ref|YP_006296040.1| Cryptochrome [Methylophaga sp. JAM1]
gi|386274497|gb|AFI84395.1| Cryptochrome [Methylophaga sp. JAM1]
Length = 437
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 163/446 (36%), Positives = 241/446 (54%), Gaps = 29/446 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ WF NDLR+ D AL K S + ++ V+C+DP+ + G R QFL+E
Sbjct: 3 TGLFWFTNDLRLQDQPALWKM-QSVDKLICVFCLDPQWFRPN-GLNAKAMGERRFQFLVE 60
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L DL++ L + G L+I+ P + L + + + V +N
Sbjct: 61 SLKDLQQQLQHAGQVLIIKQQTPHLALTELINKYNVDIIARSQHAG---------VYENR 111
Query: 202 QQVVLSSQSND-KSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+L Q D K P T++ DD+ F + LP +T FRK +E
Sbjct: 112 HWKLLQQQFPDRKFITEP------SHTLFSADDLSFQLNQLPTSFTQFRKQVED------ 159
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ +P P + I+ E++ P V + +F GGE+AAL +N+YF DL
Sbjct: 160 -LALPRPMSSPQQLPPPPGPIAID--EINQP-VLEPSKFTGGETAALKHINDYF-STDLP 214
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
YK RNE+ G STKFSPWLA G +S R++ +K+YE+ V+NDSTYW+ FEL+WR
Sbjct: 215 ANYKTVRNELDGWTNSTKFSPWLALGCLSVRHLAARLKNYEQTNVSNDSTYWIYFELLWR 274
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
+YF++ + YG LF G + + + + ++ W +G T YPL++A MK+L+ TG+M
Sbjct: 275 EYFQWYAHCYGARLFRFNGIKNSKSRRCYYPERYQKWCNGNTPYPLVNACMKQLNATGYM 334
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQI S V ++ +DWR GA +FE L+DYD +N+GNW Y AGVG DPR R F+
Sbjct: 335 SNRGRQIVASCFVHELNLDWRFGAAYFEQQLIDYDVAANWGNWQYIAGVGADPRGGRQFN 394
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALP 526
I KQ + YD EGE++ +W + +P
Sbjct: 395 IEKQTRQYDPEGEFIRHWQGDIDIIP 420
>gi|419830295|ref|ZP_14353780.1| cryptochrome, DASH family protein [Vibrio cholerae HC-1A2]
gi|419833974|ref|ZP_14357429.1| cryptochrome, DASH family protein [Vibrio cholerae HC-61A2]
gi|422917675|ref|ZP_16951993.1| cryptochrome DASH [Vibrio cholerae HC-02A1]
gi|423822581|ref|ZP_17716591.1| cryptochrome, DASH family protein [Vibrio cholerae HC-55C2]
gi|423855972|ref|ZP_17720396.1| cryptochrome, DASH family protein [Vibrio cholerae HC-59A1]
gi|423882846|ref|ZP_17723983.1| cryptochrome, DASH family protein [Vibrio cholerae HC-60A1]
gi|423998105|ref|ZP_17741357.1| cryptochrome DASH [Vibrio cholerae HC-02C1]
gi|424016998|ref|ZP_17756828.1| cryptochrome DASH [Vibrio cholerae HC-55B2]
gi|424019923|ref|ZP_17759709.1| cryptochrome DASH [Vibrio cholerae HC-59B1]
gi|424625288|ref|ZP_18063749.1| cryptochrome DASH [Vibrio cholerae HC-50A1]
gi|424629771|ref|ZP_18068059.1| cryptochrome DASH [Vibrio cholerae HC-51A1]
gi|424633819|ref|ZP_18071919.1| cryptochrome DASH [Vibrio cholerae HC-52A1]
gi|424636898|ref|ZP_18074906.1| cryptochrome DASH [Vibrio cholerae HC-55A1]
gi|424640811|ref|ZP_18078694.1| cryptochrome DASH [Vibrio cholerae HC-56A1]
gi|424648878|ref|ZP_18086541.1| cryptochrome DASH [Vibrio cholerae HC-57A1]
gi|443527798|ref|ZP_21093847.1| cryptochrome DASH [Vibrio cholerae HC-78A1]
gi|341636557|gb|EGS61251.1| cryptochrome DASH [Vibrio cholerae HC-02A1]
gi|408012865|gb|EKG50630.1| cryptochrome DASH [Vibrio cholerae HC-50A1]
gi|408018351|gb|EKG55804.1| cryptochrome DASH [Vibrio cholerae HC-52A1]
gi|408023529|gb|EKG60690.1| cryptochrome DASH [Vibrio cholerae HC-56A1]
gi|408024255|gb|EKG61376.1| cryptochrome DASH [Vibrio cholerae HC-55A1]
gi|408033158|gb|EKG69716.1| cryptochrome DASH [Vibrio cholerae HC-57A1]
gi|408055493|gb|EKG90418.1| cryptochrome DASH [Vibrio cholerae HC-51A1]
gi|408620068|gb|EKK93080.1| cryptochrome, DASH family protein [Vibrio cholerae HC-1A2]
gi|408634557|gb|EKL06792.1| cryptochrome, DASH family protein [Vibrio cholerae HC-55C2]
gi|408640875|gb|EKL12657.1| cryptochrome, DASH family protein [Vibrio cholerae HC-59A1]
gi|408640970|gb|EKL12751.1| cryptochrome, DASH family protein [Vibrio cholerae HC-60A1]
gi|408648796|gb|EKL20113.1| cryptochrome, DASH family protein [Vibrio cholerae HC-61A2]
gi|408852460|gb|EKL92282.1| cryptochrome DASH [Vibrio cholerae HC-02C1]
gi|408860086|gb|EKL99737.1| cryptochrome DASH [Vibrio cholerae HC-55B2]
gi|408867017|gb|EKM06379.1| cryptochrome DASH [Vibrio cholerae HC-59B1]
gi|443453670|gb|ELT17488.1| cryptochrome DASH [Vibrio cholerae HC-78A1]
Length = 461
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 168/450 (37%), Positives = 237/450 (52%), Gaps = 46/450 (10%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR-----FVGGESAALG 308
I + + G P +P IEQ P + G FVGGE A L
Sbjct: 163 T-------ISLSAPMGYP------HVLPPIEQ-GWQLPLMDIGTEPNHCAFVGGEQAGLT 208
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND 368
YF L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE AND
Sbjct: 209 HCQNYF-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGAND 267
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
STYW+ FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++
Sbjct: 268 STYWIFFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVN 327
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AG
Sbjct: 328 ACMRQLNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAG 387
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
+G DPR R F++ KQA YD +GE+VA W
Sbjct: 388 IGADPRGSRQFNLEKQAHTYDPKGEFVAKW 417
>gi|335043044|ref|ZP_08536071.1| deoxyribodipyrimidine photolyase [Methylophaga aminisulfidivorans
MP]
gi|333789658|gb|EGL55540.1| deoxyribodipyrimidine photolyase [Methylophaga aminisulfidivorans
MP]
Length = 441
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 157/445 (35%), Positives = 235/445 (52%), Gaps = 24/445 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ W ++DLR+ DN ALL+A + E ++ +YC DP + + G +R QFL +
Sbjct: 4 TGLYWIQHDLRIHDNAALLEASLNCEQLICLYCFDPTWFRQS-RLNARSMGVVRRQFLNK 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L DL K L +RG L++ P I L K+ AVY E ++ +
Sbjct: 63 TLHDLGKELKSRGQRLIVMTADPVSAISVLIKNHDIDAVYRSHHVGVFETRQWHHLKVDF 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ V S +W T++ + +PF + LP +T F++ E +
Sbjct: 123 PRTVFHS--------------VWTHTLFRPEQLPFSINDLPATFTDFKEFCET-IAIDKP 167
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ +P PP + L Q E ++ KG GGE AL + +YF DL
Sbjct: 168 LAMPQWLAPPVKAL----TGLSHQTETDYGELIKGF---GGEKTALDHLEQYF-SSDLPA 219
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK RNE+ G + STK S WLA G++SPR + +K YE E+ AN+STYW+ +EL+WR+
Sbjct: 220 NYKTVRNELDGWENSTKMSAWLACGALSPRKLVARLKRYETEKTANESTYWIYYELLWRE 279
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF++ + +Y + LF G K + + ++ W +G T YP+++A MK+L+ TG+MS
Sbjct: 280 YFQWYAQRYQHKLFKAEGINKQKISCCFYPERYQKWCNGNTPYPIVNACMKQLNQTGYMS 339
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQI S V ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DPR R+F++
Sbjct: 340 NRGRQIVASCFVNELQLDWRFGAAYFEQQLIDYDVASNWGNWQYIAGVGADPRGGRHFNL 399
Query: 502 PKQAQNYDREGEYVAYWLPQLKALP 526
KQ YD EG ++ W + P
Sbjct: 400 DKQTATYDAEGHFIRQWKGEANPYP 424
>gi|262147205|ref|ZP_06028009.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae INDRE 91/1]
gi|379741653|ref|YP_005333622.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|421332956|ref|ZP_15783433.1| cryptochrome DASH [Vibrio cholerae CP1046(19)]
gi|424599301|ref|ZP_18038482.1| cryptochrome DASH [Vibrio Cholerae CP1044(17)]
gi|424602022|ref|ZP_18041164.1| cryptochrome DASH [Vibrio cholerae CP1047(20)]
gi|262031362|gb|EEY49972.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae INDRE 91/1]
gi|378795163|gb|AFC58634.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|395928358|gb|EJH39111.1| cryptochrome DASH [Vibrio cholerae CP1046(19)]
gi|395976009|gb|EJH85473.1| cryptochrome DASH [Vibrio cholerae CP1047(20)]
gi|408042018|gb|EKG78093.1| cryptochrome DASH [Vibrio Cholerae CP1044(17)]
Length = 461
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 167/448 (37%), Positives = 238/448 (53%), Gaps = 42/448 (9%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T +
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWSE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPP---PSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRV 310
I + + G P P + +PL++ + P S FVGGE A L
Sbjct: 163 T-------ISLSAPMGYPHVLPPIEQGWQLPLMDIVT--EPNHSA---FVGGEQAGLTHC 210
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
YF L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDST
Sbjct: 211 QNYF-SSLLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDST 269
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW+ FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A
Sbjct: 270 YWIFFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNAC 329
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG
Sbjct: 330 MRQLNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVG 389
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYW 518
DPR R F++ KQA YD +GE+VA W
Sbjct: 390 ADPRGSRQFNLEKQAHTYDPKGEFVAKW 417
>gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010]
gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010]
Length = 441
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 156/444 (35%), Positives = 240/444 (54%), Gaps = 26/444 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ WF NDLRV DN ALL+A + + ++ ++C D + T F G R QFL+E
Sbjct: 4 TGLFWFNNDLRVHDNPALLEASLNCDRLICLFCYDTFWDKPT-GFNAKPLGDKRRQFLLE 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L DL+ L RG L++ G P II L + + VY E + +R +
Sbjct: 63 SLNDLQHTLEARGQQLIVMKGDPVAIISELLSKYHVNHVYRSYHVGVYENRQWQHLRADF 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+V S W +++ +PFD +SLPD ++ FRK +E+ +
Sbjct: 123 PRVQFDS--------------YWTHSLFQQRQLPFDLTSLPDTFSQFRKIVES-LPIDKP 167
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGM-RFVGGESAALGRVNEYFWKKDLL 320
+++P + P S + ++PL P F GGE AA+ + YF D
Sbjct: 168 VQMPKTLAVPVSELHEDTLPL--------PTYRNSQDHFTGGEKAAIEHMEAYF-SSDYP 218
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
YK RN++ +STKFS WLA+GS+S + + ++++ +E+ AN+STYW+ FEL+WR
Sbjct: 219 AQYKLLRNDLDHWSHSTKFSAWLANGSLSVKRLLQQLRQFEKTHTANESTYWIFFELLWR 278
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
+YF++ + +Y + LF G K + + ++ W G T YPL++A MK+L+ TG+M
Sbjct: 279 EYFQWYAFRYRHKLFRPQGLGKKKITCCFYPERYQKWAHGNTPYPLVNALMKQLNDTGYM 338
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQI S + ++ +DWR GA +FE L+DYD +N+GNW Y AGVG DPR R+F+
Sbjct: 339 SNRGRQIVASCFINELELDWRFGAAYFEQQLIDYDVAANWGNWQYIAGVGADPRGGRHFN 398
Query: 501 IPKQAQNYDREGEYVAYWLPQLKA 524
I KQ + YD + ++ W Q+ A
Sbjct: 399 IDKQQRQYDPQQTFIQKWKGQVTA 422
>gi|422923119|ref|ZP_16956282.1| cryptochrome DASH [Vibrio cholerae BJG-01]
gi|341644424|gb|EGS68634.1| cryptochrome DASH [Vibrio cholerae BJG-01]
Length = 461
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 167/445 (37%), Positives = 237/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL+ + P S FVGGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLMGIVT--EPNHSA---FVGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSMLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQ YD +GE+VA W
Sbjct: 393 RGSRQFNLAKQTHTYDPKGEFVAKW 417
>gi|89075135|ref|ZP_01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
gi|89049089|gb|EAR54655.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
Length = 443
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/440 (35%), Positives = 237/440 (53%), Gaps = 28/440 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+ WF NDLR+ DN L +A++ + +L VY ++P+ Q + G +R +FL++
Sbjct: 5 ALYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPKKQQFN-RYQLISVGEIRHRFLLQA 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L+ NL G LL+ P +P L + +G + +Y + E Q
Sbjct: 64 LQALQSNLATLGQRLLVMQADPMVSMPVLIEQYGINLIYRSRHCGWYE----------QQ 113
Query: 203 QVVLSSQSNDKSTNHPQLKLIW--GTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
Q Q +P L+ + T+Y D +PF +P Y+ FRK IE TV
Sbjct: 114 QWCYLKQC------YPHLRFVEVDTHTLYSQDQLPFPLLDMPKSYSKFRKQIEQNVTVSS 167
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKD 318
I +P P P+V E L++ +S + + GGE+AAL + +YF
Sbjct: 168 PILVPDYLPPQPNVF------CSEYLDIRHVHISDNDQVEWHGGENAALMHLQQYF-SSR 220
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L YKETRN + G + STKFSPWLA G+IS + I ++ YE+ + N STYW+ FEL+
Sbjct: 221 LPSSYKETRNAIEGWNNSTKFSPWLACGAISAKMIMARLQDYEKYKEKNSSTYWIFFELL 280
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++F++ + G L+ G + S F+ W +G T YP+++A MK+L+ TG
Sbjct: 281 WREFFQWHAHAVGRDLYRFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNQTG 340
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQI S LV ++ +DWR GA +FE L+D+D +N+GNW Y AGVG D RE R+
Sbjct: 341 YMSNRGRQIVASCLVNELSVDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREKRW 400
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F + KQ + +D ++ +W
Sbjct: 401 FDLEKQTRIFDPNHHFIRHW 420
>gi|433429222|ref|ZP_20407321.1| deoxyribodipyrimidine photolyase, partial [Haloferax sp. BAB2207]
gi|432195158|gb|ELK51716.1| deoxyribodipyrimidine photolyase, partial [Haloferax sp. BAB2207]
Length = 289
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/245 (55%), Positives = 165/245 (67%), Gaps = 2/245 (0%)
Query: 290 SPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSIS 349
+P + F GGE+AAL RV Y W D L+ YKETRN +LG DYS+KFSPWL G +S
Sbjct: 18 APDDRGVLPFDGGETAALDRVESYIWAGDHLREYKETRNGLLGADYSSKFSPWLNEGCLS 77
Query: 350 PRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWS 408
RY+ EV YE RV NDSTYW++FEL WRD+F+F K+G+ FH G R + + W
Sbjct: 78 SRYVKAEVDRYEARRVENDSTYWLVFELRWRDFFQFQFAKHGSDCFHREGIRERTDIDWR 137
Query: 409 QDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFE 468
+D FE W G TG P +DANM+EL+ TG+MSNRGRQ A SFL D+ +DWR GA +FE
Sbjct: 138 RDDAKFERWAAGKTGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAYFE 197
Query: 469 TCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
T L+DYDP SNYGNW Y AGVGND R DR F + QA YD + EYV WLP+L A+P E
Sbjct: 198 TRLVDYDPASNYGNWAYIAGVGNDSR-DRSFDVRWQANRYDEDAEYVKTWLPELDAVPAE 256
Query: 529 RRNFP 533
+ P
Sbjct: 257 YAHEP 261
>gi|90578157|ref|ZP_01233968.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
gi|90441243|gb|EAS66423.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
Length = 443
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/440 (35%), Positives = 237/440 (53%), Gaps = 28/440 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WF NDLR+ DN L +A++ + +L VY ++P+ Q + G +R +FL++
Sbjct: 5 GLYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPQKQQFN-RYQLVSVGEIRHRFLLQA 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L+ NL G LL+ P +P L + +G + +Y + E R +++
Sbjct: 64 LQALQSNLATLGQRLLVMQADPMLSMPVLIEQYGINLIYRSRHCGWYEQQQWRYLKQC-- 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIW--GTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+P L+ + T+Y D +PF S +P Y+ FRK IE TV
Sbjct: 122 --------------YPHLRFVEVDTHTLYSQDQLPFPLSDMPKSYSKFRKQIEQNVTVSS 167
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKD 318
+ +P P P+V + L++ +S + + GGE+AAL + +YF
Sbjct: 168 PLLVPDYLPPQPNVF------CSDYLDIRHVHISDNDQVEWHGGENAALMHLQQYF-SSS 220
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L YKETRN + G D STKFSPWLA G++S + I + YE+ + N STYW+ FEL+
Sbjct: 221 LPSNYKETRNAIEGWDNSTKFSPWLACGALSAKMIMATLLDYEKYKEKNSSTYWIFFELL 280
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++F++ + G L+ G + S F+ W +G T YP+++A MK+L+ TG
Sbjct: 281 WREFFQWHAHAVGRDLYRFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNKTG 340
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQI S LV ++ IDWR GA +FE L+D+D +N+GNW Y AGVG D RE R+
Sbjct: 341 YMSNRGRQIVASCLVNELSIDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREKRW 400
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F + KQ + +D ++ +W
Sbjct: 401 FDLEKQTRIFDPNHHFIRHW 420
>gi|229520286|ref|ZP_04409712.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TM 11079-80]
gi|419837545|ref|ZP_14360983.1| cryptochrome DASH [Vibrio cholerae HC-46B1]
gi|421344689|ref|ZP_15795092.1| cryptochrome DASH [Vibrio cholerae HC-43B1]
gi|422307766|ref|ZP_16394921.1| cryptochrome, DASH family protein [Vibrio cholerae CP1035(8)]
gi|423735495|ref|ZP_17708692.1| cryptochrome, DASH family protein [Vibrio cholerae HC-41B1]
gi|424009837|ref|ZP_17752774.1| cryptochrome DASH [Vibrio cholerae HC-44C1]
gi|229342652|gb|EEO07644.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TM 11079-80]
gi|395940769|gb|EJH51450.1| cryptochrome DASH [Vibrio cholerae HC-43B1]
gi|408618970|gb|EKK92017.1| cryptochrome, DASH family protein [Vibrio cholerae CP1035(8)]
gi|408629871|gb|EKL02530.1| cryptochrome, DASH family protein [Vibrio cholerae HC-41B1]
gi|408856093|gb|EKL95788.1| cryptochrome DASH [Vibrio cholerae HC-46B1]
gi|408863902|gb|EKM03373.1| cryptochrome DASH [Vibrio cholerae HC-44C1]
Length = 461
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 165/445 (37%), Positives = 239/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ + L + LADL +L G L + P + + L +Y + S+E
Sbjct: 57 AKKRVLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVEAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S F+GGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLLDIVA--EPNHSA---FIGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSLLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ + LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVATCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+VA W
Sbjct: 393 RGSRQFNLEKQAHTYDPKGEFVAKW 417
>gi|153831636|ref|ZP_01984303.1| cryptochrome dash [Vibrio harveyi HY01]
gi|148872146|gb|EDL70963.1| cryptochrome dash [Vibrio harveyi HY01]
Length = 450
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/440 (36%), Positives = 235/440 (53%), Gaps = 26/440 (5%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQF 138
K + + WF NDLR+ DN L +A + + ++ VYC P+ S HF G+ + QF
Sbjct: 3 KTIGLYWFTNDLRMHDNPLLTRASEEVDALICVYCY-PKLSPFLAHFAQESMFGSAKQQF 61
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L E L L +L L + P + I + G +Y + SEE +V +R
Sbjct: 62 LDESLHCLNLSLNAFDQRLQVVDLHPYQAIKHAVEKLGVTHLYCDAFSGSEEQDVVDHIR 121
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ + + + Q +++ ++D+PF LPD +T FRK E
Sbjct: 122 QESEHLTICQQEV--------------RSLFTVEDLPFALEDLPDTFTKFRKKAEKVSLA 167
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
+ + ++ PS + ++ LI + K F GGE A L YF
Sbjct: 168 EPFVTV-TALPLTPSGLALPTLRLIRDV--------KPCLFTGGEQAGLEHARRYF-SST 217
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L YK+TRN + G DYSTKFSPWLA+G +SP+ IY +K YER + AN+STYW+ FEL+
Sbjct: 218 LASEYKQTRNGLDGMDYSTKFSPWLANGCLSPKTIYAMLKRYERLKGANESTYWIYFELL 277
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YF + + ++ LF GG + S F+ W+ G T +P+++A M +L+ TG
Sbjct: 278 WREYFYWYARRHKRQLFRFGGIQNQAPLTSFYAHRFQQWKKGETPFPIVNACMHQLNETG 337
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ+ S LV ++G+DWR GA +FE+ L+DYD SN+GNW Y AGVG DPR R
Sbjct: 338 YMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRGSRQ 397
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F++ KQ + YD E++ W
Sbjct: 398 FNLEKQTEMYDPHMEFIDRW 417
>gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudoalteromonas atlantica T6c]
Length = 445
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/448 (35%), Positives = 248/448 (55%), Gaps = 28/448 (6%)
Query: 72 SKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT 131
S AL + G I WFR+DLR+ DN AL+ + + +L V+ +DPR +++ HF
Sbjct: 5 SSALPKRG----IFWFRHDLRLHDNPALVALSEQVDELLCVFIIDPRWFKSS-HFQSAHM 59
Query: 132 GALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA-QKETCSEE 190
G R FL + L++L+++L +G L + G+ E++ +L S+ V + E
Sbjct: 60 GDKRWAFLQQSLSELQRHLQEQGQQLFVLEGETLEVLDALIGSYTPDIVASGMHPGVYER 119
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 250
+R+ + N + + Q N G +++ +PF+ LP +T FRK
Sbjct: 120 QQWQRVKQGNPNTLFI--QEN-------------GHSLFQPATLPFEIEYLPASFTPFRK 164
Query: 251 SIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRV 310
+E +++ + P ++ + + ++ PK + G+ F GGE AAL ++
Sbjct: 165 RVED-------LQVAVALPAPTALPPAPDLAWLSSKNVNPPKKAIGLAFTGGEDAALAQL 217
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
+ +K YK+TRN + G DYS+K SPWLA+G +S R ++ E++ YE E NDST
Sbjct: 218 EYTLFTSHNIKNYKQTRNGLDGWDYSSKLSPWLANGCLSVRQVFTELRRYESEYEKNDST 277
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW+ FEL+WR+YF++ KY + LF G + + F W G T YP+++A
Sbjct: 278 YWLYFELLWREYFQWHLFKYQSKLFQFSGTQDTRPLTTFVALRFAMWCQGETPYPIVNAC 337
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
MK+L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FE L+D+D SN+GNW Y +GVG
Sbjct: 338 MKQLNHTGYMSNRGRQLVASCLVNELGVDWRFGAAYFEQQLVDFDVASNWGNWQYLSGVG 397
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYW 518
DPR R F + KQAQ YD GE+V W
Sbjct: 398 VDPRGHRRFDLAKQAQQYDPNGEFVRQW 425
>gi|229523842|ref|ZP_04413247.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae bv. albensis VL426]
gi|229337423|gb|EEO02440.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae bv. albensis VL426]
Length = 461
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 165/445 (37%), Positives = 236/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T +
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWSE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKWFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S F+GGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLMDIVT--EPNHSA---FIGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSLLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGVTPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQ YD +GE+VA W
Sbjct: 393 RGSRQFNLAKQTHTYDPKGEFVAKW 417
>gi|156977901|ref|YP_001448807.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
gi|156529495|gb|ABU74580.1| hypothetical protein VIBHAR_06693 [Vibrio harveyi ATCC BAA-1116]
Length = 460
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 237/442 (53%), Gaps = 30/442 (6%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQF 138
K + + WF NDLR+ DN L +A + + ++ VYC P+ S HF G+ + QF
Sbjct: 13 KTIGLYWFTNDLRMHDNPLLARASEEVDALIFVYCY-PKLSPFLAHFAQESMFGSAKQQF 71
Query: 139 LIECL--ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
L E L +L N ++ L ++ H P + I + +Y SEE +V
Sbjct: 72 LDESLHCVNLTLNAFDQRLQVVDLH--PYQAIKHAVEKLCVTHLYCDTFPGSEERDVVDH 129
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
+R+ L+ + + Q ++ ++D+PF LPD +T FRK E
Sbjct: 130 IRQELEHLTICQQEV--------------RSLLTVEDLPFALEDLPDTFTKFRKKAE-NV 174
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
++ ++ P PS + ++ LI + K F GGE A L YF
Sbjct: 175 SLEEPFATVTALPPTPSGLALPTLRLIRDV--------KPCLFTGGEQAGLEHARRYF-S 225
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
L YK+TRN + G DYSTKFSPWLA G +SP+ IY +K YER + AN+STYW+ FE
Sbjct: 226 STLASEYKQTRNGLDGMDYSTKFSPWLAHGCLSPKTIYAMLKRYERLKGANESTYWIYFE 285
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L+WR+YF + + ++ LF GG + S F+ W+ G T +P+++A M +L+
Sbjct: 286 LLWREYFYWYARRHKRQLFRFGGIQNQAPLTSFYAHRFQQWKKGETPFPIVNACMHQLNE 345
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG+MSNRGRQ+ S LV ++G+DWR GA +FE+ L+DYD SN+GNW Y AGVG DPR
Sbjct: 346 TGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRGS 405
Query: 497 RYFSIPKQAQNYDREGEYVAYW 518
R F++ KQ + YD E++ W
Sbjct: 406 RQFNLEKQTEIYDPHMEFIDRW 427
>gi|421354490|ref|ZP_15804822.1| cryptochrome DASH [Vibrio cholerae HE-45]
gi|395953615|gb|EJH64228.1| cryptochrome DASH [Vibrio cholerae HE-45]
Length = 461
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 165/445 (37%), Positives = 238/445 (53%), Gaps = 36/445 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ + L + LADL +L G L + P + + L +Y + S+E
Sbjct: 57 AKKRVLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVEAMAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + P PP W +PL++ + P S F+GGE A L Y
Sbjct: 163 T-LSLSAPMGYPRVL--PPIEQGW-QLPLLDIVA--EPNHSA---FIGGEQAGLTHCQNY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDSTYW+
Sbjct: 214 F-SSLLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDSTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A M++
Sbjct: 273 FFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNACMRQ 332
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP
Sbjct: 333 LNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADP 392
Query: 494 REDRYFSIPKQAQNYDREGEYVAYW 518
R R F++ KQA YD +GE+V W
Sbjct: 393 RGSRQFNLAKQAHTYDPKGEFVDKW 417
>gi|343507695|ref|ZP_08745084.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
gi|342796945|gb|EGU32607.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
Length = 446
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 156/444 (35%), Positives = 236/444 (53%), Gaps = 38/444 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQFLI 140
+ + WF DLR+ +N L + E ++ +YCV P+ ++ H+ + GA +AQF+
Sbjct: 5 IGLYWFTQDLRIDENPLLQRVSQEVETLICLYCV-PKMTRFLTHYAQERQFGAAKAQFVA 63
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ + +L ++L LLI P + L K +Y S+E +V + + +
Sbjct: 64 QSVHNLSESLSALRQRLLITTSDPHIALHGLIKRHAVTHLYCDHFVGSDERDVLQRLDEE 123
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
++++ Q N ++ +YH D+PF+ +LP +T FRK IEA+
Sbjct: 124 FPSLIVT-QDNMRN-------------LYHEADLPFELEALPATFTQFRKQIEAQQKPST 169
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR------FVGGESAALGRVNEYF 314
++ + PPP LEL + F GGE A + YF
Sbjct: 170 STKV--THLPPP-------------LELQFEDTFSALNDDLPVLFPGGEHAGIAHCQRYF 214
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
L + YK+TRNE+ G DYSTK SPWLA G +SPR + + +E + AN+STYW+
Sbjct: 215 -SSSLPQHYKQTRNELDGMDYSTKLSPWLAMGCLSPRTVLAMLAEHEGQYGANESTYWIY 273
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
FEL+WR+YF + +LK+G +LFH G + S + F W+ G T +P+++A M +L
Sbjct: 274 FELLWREYFYWSALKHGATLFHFSGNKTTAPLTSFYAQRFVQWKRGETPFPIVNACMHQL 333
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+MSNRGRQI S L+ ++ +DWR GA +FET L+DYD SN+GNW Y AGVG DPR
Sbjct: 334 NQTGYMSNRGRQIVASCLIHELQLDWRYGAAYFETQLVDYDVASNWGNWQYLAGVGADPR 393
Query: 495 EDRYFSIPKQAQNYDREGEYVAYW 518
R F + KQ Q YD ++ W
Sbjct: 394 GSRRFDLNKQTQQYDANSSFIERW 417
>gi|297582918|ref|YP_003698698.1| DASH family cryptochrome [Bacillus selenitireducens MLS10]
gi|297141375|gb|ADH98132.1| cryptochrome, DASH family [Bacillus selenitireducens MLS10]
Length = 478
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 164/460 (35%), Positives = 234/460 (50%), Gaps = 36/460 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V ++WFR+DLR+ D+E L A + E V+ D R + G + G R +FL+E
Sbjct: 4 VNVIWFRHDLRIHDHEPLRLAHWAKEETEAVFVRDARMDEKVTP-GLKRAGEHRERFLME 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L +L G+ + G + + GA V+ + EE R++L
Sbjct: 63 SLVVLAGSLEAEGMPFTVLKGPVVKTMIDWLTERGATDVFLHEHPGFEE-------RRDL 115
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++V ++ H + G TM+ D +PF S P +T FRK +EA
Sbjct: 116 EEV-------QRALPHIHWHVSEGHTMFRRDQLPFSFSEFPMSFTMFRKRLEAH------ 162
Query: 262 IRIPS-----SFGPPPSVVDW----------GSVPLIEQLELHSPKVSKGMRFVGGESAA 306
+R+P S+ +V + GS + H P GGE A
Sbjct: 163 LRLPEKKRSFSYDSYDTVTEAEPVFLSGKESGSFGAVRGSGDHIPHAGGQGIVRGGEQEA 222
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
L R+ Y L YKETR+ M D S+K S WLA+GS+SP+ +Y + E
Sbjct: 223 LARLRSYVGNASRLFTYKETRDGMFAFDDSSKLSFWLANGSLSPKRVYRAILDMEAANGR 282
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
N+S+YW+ FEL+WR+YF+++ L LF G + W +D+ LF++W+DG TG+PL
Sbjct: 283 NESSYWLFFELLWREYFQWLMLATDARLFTKQGLLDVAIVWHEDKALFQAWKDGETGFPL 342
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M+EL TG+MSNR RQ A SFL +++GI+W GA +FE L+DYDP SNYGNW Y
Sbjct: 343 VDAAMRELKATGYMSNRARQNAASFLTKNLGINWLWGARYFEEQLIDYDPASNYGNWAYQ 402
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
AGVG D RE R F++ Q YD +G Y WL LP
Sbjct: 403 AGVGTDLRELRAFNVIGQGIRYDPKGSYAKNWLHLPDTLP 442
>gi|410626719|ref|ZP_11337472.1| cryptochrome DASH [Glaciecola mesophila KMM 241]
gi|410153820|dbj|GAC24241.1| cryptochrome DASH [Glaciecola mesophila KMM 241]
Length = 433
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 160/437 (36%), Positives = 236/437 (54%), Gaps = 24/437 (5%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR+DLR+ DN AL+ + + +L V+ +DPR +++ HF G R FL +
Sbjct: 12 GLFWFRHDLRLHDNPALVALSEQVDELLCVFIIDPRWFKSS-HFQSAHMGDKRWAFLQQS 70
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERLVRKNL 201
L++L+ NL +G L + G+ E++ +L S+ + V + E +RL +K
Sbjct: 71 LSNLQDNLQQQGHQLFVLEGETLEVLDALVGSYTPNIVASGMHPGVYERQQWQRLKQK-- 128
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
Q V Q N S P D +PF+ LP +T FRK +E +
Sbjct: 129 QPDVHFIQENAHSLFQP-------------DTLPFEIEFLPASFTPFRKRVEDQS----- 170
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ + P ++ +P + + K + G+ F GGE A L ++ + +K
Sbjct: 171 --VALALPAPTALPPAPDLPWLSSKNMDLTKKATGLVFTGGEDAGLAQLEYTLFTSHNIK 228
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK+TRN + G DYS+K SPWLA+G +S R + E+ YE E NDSTYW+ FEL+WR+
Sbjct: 229 NYKQTRNGLDGWDYSSKLSPWLANGCLSVRQVLTELTRYESEYEKNDSTYWLYFELLWRE 288
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF++ KY + LF G + + F W G T YP+++A MK+L+ TG+MS
Sbjct: 289 YFQWHLFKYQSKLFQFSGTQDTRPLTTFIAPRFAMWCQGQTPYPIVNAYMKQLNHTGYMS 348
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQ+ S LV ++G+DWR GA +FE L+D+D SN+GNW Y AGVG DPR R F +
Sbjct: 349 NRGRQLVASCLVNELGVDWRFGAAYFEQQLIDFDVASNWGNWQYLAGVGVDPRGYRRFDL 408
Query: 502 PKQAQNYDREGEYVAYW 518
KQ Q YD GE+V W
Sbjct: 409 AKQTQQYDPNGEFVRQW 425
>gi|326799096|ref|YP_004316915.1| DASH family cryptochrome [Sphingobacterium sp. 21]
gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
Length = 434
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 156/447 (34%), Positives = 234/447 (52%), Gaps = 23/447 (5%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
K +VWFRNDLRV DNE L +A ++ V+PVY DPR T G KTG +RA+F+
Sbjct: 3 KDTILVWFRNDLRVRDNEILWQALAKADRVVPVYVFDPRQF-TPLKNGMHKTGVIRAKFI 61
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+E + DLR +L + G +LL+ G PEEI+P+LA+ + VY +E EE ++ LV +
Sbjct: 62 LESVQDLRLSLRSLGADLLVVSGYPEEILPTLAERYQVKEVYHHREVAKEETHISTLVEE 121
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + L+ L+ G T+YH +D+PF +PD + FRK IE + T+R
Sbjct: 122 ALWKKRLN------------LRHFIGHTLYHKEDLPFPIKDIPDAFATFRKKIERETTIR 169
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKK 317
+ P P ++ + +P + L + + + F GGE+ L R+
Sbjct: 170 PSVETPVKIEVPDNL-EASEIPSLASLGFSAGLIGIADQSPFKGGETEGLRRLETLLAGA 228
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
D + G + T SPW+A G +S +Y VK YE + + ++ L
Sbjct: 229 DTASLTGS-----FGSEEGTVLSPWIAMGCLSVHTVYHAVKKYEDKSLPKKQAAAIITGL 283
Query: 378 MWRDYFRFISLKYGNSLF-HLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
+WRDYFRF+ K+GN F G ++ LF+ W+ G TG P +DA M +L+
Sbjct: 284 LWRDYFRFMFKKHGNKFFLQQGFSNEIPAYELVGDALFDRWKRGETGDPFVDAAMHQLNT 343
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
GF+S+ R + +LV ++ I +GA +FE L+DY+P SNYGNW + AGVG+ +++
Sbjct: 344 IGFISHTARMLVAHYLVSNLNISHLLGAAYFEDKLVDYNPASNYGNWAHIAGVGSSTKDN 403
Query: 497 RYFSIPKQAQNYDREGEYVAYW-LPQL 522
I K D +GEYV W PQL
Sbjct: 404 GIRDIKKLQNLLDAQGEYVKRWGTPQL 430
>gi|313200806|ref|YP_004039464.1| cryptochrome, dash family [Methylovorus sp. MP688]
gi|312440122|gb|ADQ84228.1| cryptochrome, DASH family [Methylovorus sp. MP688]
Length = 467
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 164/459 (35%), Positives = 240/459 (52%), Gaps = 48/459 (10%)
Query: 84 IVWFRNDLRVLDNEALL----KAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
I WFR DLR+ D AL +A +LPV+ DP S T +GF + R +L
Sbjct: 29 IFWFRRDLRLHDQVALTWAARQAAHIGSWLLPVFVHDPAESGLT-RWGFARMAPHRRAWL 87
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+ L L G +L+ HG + + L ++ G + ++ EE V +R
Sbjct: 88 TSAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLVCEEIAAPEEQAVVAALRA 147
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+V K +W +++ ++++PFD ++PD +T FR ++E + V+
Sbjct: 148 AGVKV----------------KTVWQSSLVAVENLPFDPQAVPDTFTTFRHALE-RGHVQ 190
Query: 260 GCIRIPS--SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR------------------F 299
+PS P PS ++P E+ S M F
Sbjct: 191 AARPLPSIKQLPPLPSHALLNAIPS----EVASDGTDHAMASEPWPDDARSAFPLGSSGF 246
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
G E AAL + +Y ++ L YK TRN ++G DYS+K+SPWLA+G++S R + +++
Sbjct: 247 DGSEQAALQHLQQYC-QRRLPHSYKSTRNGLIGVDYSSKWSPWLATGALSARQAWAAIQA 305
Query: 360 YERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRD 419
+E E AN+STYW+ FEL+WRD+FR++ K+GN L+ G + S D F W
Sbjct: 306 FEAEHGANESTYWLWFELLWRDHFRWLHFKHGNRLYRARGLGEAPVP-SHDPDHFARWCR 364
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TG P IDA M+EL+ TG++SNR RQ S+L+ D+G DWR GA WFE+ LLDYD SN
Sbjct: 365 GETGQPFIDAGMRELAATGYLSNRMRQNVASYLIHDLGCDWRAGAAWFESQLLDYDVYSN 424
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
GNW Y +G G DPR+ R F+ KQAQ+YD +G Y A W
Sbjct: 425 QGNWLYLSGRGTDPRQGRRFNPDKQAQDYDADGSYRALW 463
>gi|329894043|ref|ZP_08270028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
proteobacterium IMCC3088]
gi|328923215|gb|EGG30535.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
proteobacterium IMCC3088]
Length = 431
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/436 (35%), Positives = 235/436 (53%), Gaps = 27/436 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W +NDLR+ DN A +SE+++ VYC P+ G GA R +FL E
Sbjct: 3 TLLWLQNDLRLADNAGFQLASQASELLI-VYCW-PKPRPWCNLTGL---GAQRTRFLSET 57
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L LR L G ++ + PE+++P + + G + + E N + ++ L
Sbjct: 58 LEHLRHQLSELGQDVFVSVQHPEQVLPLMIEELGIEHLITSRPQAYNESNSLKALQDALD 117
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V ++ G T++ DD+ FD + LP +T FRK +EA+ + +
Sbjct: 118 CNVSVTR---------------GNTLFDEDDLTFDLADLPKHFTPFRKKMEAQ-PIAEPL 161
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
P P + V +G P ++ + + GGE AL R+ + + + +
Sbjct: 162 ATPKQLPPKITEVRYGPTPS------NNTRPHPTFPYRGGEQEALRRIKHWVFDRQAIAT 215
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YK+TRN + G D + SPWLA+G++SPR I V+ +E E AN+STYWV FEL+WR++
Sbjct: 216 YKQTRNALDGLDNYSALSPWLATGAVSPRTILHHVQRFENEVTANESTYWVFFELLWREF 275
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F + + G LF G + + + D + F W G T YPL++A M +L +GFMSN
Sbjct: 276 FYWRAQIDGVHLFLPYGVARKKQLRTFDPRQFTRWCRGETNYPLVNALMHQLVRSGFMSN 335
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
RGRQIA S L+ D+G+DWR GA +FE L+D+D SNYGNW Y AGVG+DPR R+F+I
Sbjct: 336 RGRQIAASSLIHDLGVDWRYGAAFFEKYLIDFDVASNYGNWQYIAGVGSDPRGGRHFNID 395
Query: 503 KQAQNYDREGEYVAYW 518
KQ + YD +G ++ W
Sbjct: 396 KQTEQYDPKGLFITQW 411
>gi|269965489|ref|ZP_06179607.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
gi|269829852|gb|EEZ84083.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
Length = 450
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/441 (36%), Positives = 235/441 (53%), Gaps = 28/441 (6%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQF 138
K + + WF NDLR+ DN L A + ++ +YC P + +HF + G + QF
Sbjct: 3 KKIGLYWFTNDLRLHDNPLLKSASVEMDELICLYCY-PSMTPYLHHFAQEASFGRAKLQF 61
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L++L ++L + G L P++ I FG +YA S+E +
Sbjct: 62 LDSSLSELNQSLNHLGQRLWAVELTPDQAIKYAVNRFGVTHIYADAFPGSDE-------Q 114
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ L +V + +H ++K T+ + +PFD S+LP +T FRK +E
Sbjct: 115 QALDRVA-------EGASHVKIKQQAIRTLLREEQLPFDLSNLPTTFTQFRKQVEGLDIS 167
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQL-ELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
R P S+ +PL L + + F GGES L +YF
Sbjct: 168 R----------PHESIRSLPPIPLGVNLPSVTAYYFDAKAAFHGGESRGLEHCRQYF-AS 216
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
L YK+TRN + G DYSTKFSPWLA G +SP+ IY +K YE E ANDSTYW+ FEL
Sbjct: 217 TLASEYKQTRNGLDGMDYSTKFSPWLAHGCVSPKTIYAMLKRYEAENGANDSTYWIYFEL 276
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR+YF + + ++ LF GG + S F+ W+ G T +P+++A M +L+ T
Sbjct: 277 LWREYFYWYARRHKRQLFRFGGIQNRAPLTSFYAHRFQQWKKGETPFPIVNACMHQLNET 336
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQ+ S LV ++G+DWR GA +FE+ L+DYD SN+GNW Y AGVG DPR R
Sbjct: 337 GYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRGSR 396
Query: 498 YFSIPKQAQNYDREGEYVAYW 518
F++ KQ + YD E++ W
Sbjct: 397 QFNLEKQTEMYDPHMEFIDRW 417
>gi|350532661|ref|ZP_08911602.1| deoxyribodipyrimidine photolyase [Vibrio rotiferianus DAT722]
Length = 444
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/440 (35%), Positives = 226/440 (51%), Gaps = 30/440 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + WF NDLRV DN L KA ++++ +YC S + + G + QFL E
Sbjct: 3 IGLYWFTNDLRVHDNPNLTKATSEVDLLVCLYCYPKISSYLAQYAQVSQFGVAKQQFLDE 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKET-CSEELNVERLVRKN 200
L L +L LL+ P I ++FG +Y + C E+ + +L
Sbjct: 63 SLFCLNSSLNTLKQRLLVVILHPYHAIKHAIENFGVTRLYVSAISGCDEQAVLAKL---- 118
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIW--GTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+P + ++ +++ +PF LPD +T FRK +E
Sbjct: 119 -------------QVEYPHISVVQQEAQSLFCSGQLPFKTDDLPDTFTKFRKQVEVLLIS 165
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
++ S+ P P + ++ L L K F GGE A L +YF
Sbjct: 166 EPVEKV-SALPPAPETLPISTLNLTRDL--------KPALFSGGEQAGLEHCRQYF-SST 215
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L YK+TRN + G DYSTK SPWLA G +SP+ I +K YE E ANDSTYW+ FEL+
Sbjct: 216 LASEYKQTRNGLDGMDYSTKLSPWLAHGCLSPKTICGMLKRYEAENGANDSTYWIYFELL 275
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YF + + +Y LF GG + S F+ W+ G T +P+++A M +L+ TG
Sbjct: 276 WREYFYWYARRYKRQLFRFGGIQNQAPLTSFYAHRFQQWKKGETPFPIVNACMHQLNETG 335
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DPR R
Sbjct: 336 YMSNRGRQLVASCLVHELGLDWRCGAAYFETQLIDYDVASNWGNWQYLAGVGADPRGSRQ 395
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F++ KQ + YD E++ W
Sbjct: 396 FNLEKQTEMYDPHMEFIDRW 415
>gi|254281574|ref|ZP_04956542.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219677777|gb|EED34126.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 439
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 159/433 (36%), Positives = 237/433 (54%), Gaps = 28/433 (6%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
WF+ DLR+ DN AL + +++ +L VY + +T G R +FL E L
Sbjct: 12 WFQRDLRLADNPAL-SSHVAADTLLCVYLM----PKTGPWCNVTGMGPQRDRFLRESLQA 66
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LR L G +LL+ G PE ++P L F V A C+ ERL + LQ+ +
Sbjct: 67 LRDELNRLGQDLLVLEGSPELVLPDLVSRFDITEVSA----CTAPGYYERLTYERLQRRL 122
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
+L G T++ D +P + P +T FRK +E T+ P
Sbjct: 123 GVP-----------FELHRGNTLFTEDQLPTGLADFPATFTPFRKQVE-PLTITPPAAEP 170
Query: 266 SSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKE 325
+ PPP + ++P + L S + GG +A L RV ++ + + + YKE
Sbjct: 171 VTL-PPPPAAQFDAIPPAQALP------SPALPIPGGRAAGLRRVRQFIFDERRIVSYKE 223
Query: 326 TRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRF 385
TRN + G D S+ SPWLA+G++S R + E+ +ERE++AN+STYW+ FEL+WR++F++
Sbjct: 224 TRNCLDGLDGSSSLSPWLANGNLSAREVAHEIFRFEREQLANESTYWLFFELLWREFFQW 283
Query: 386 ISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGR 445
++ + LFH+GG +K + D + F W G T +PL++A M +L+ TG+MSNRGR
Sbjct: 284 RAVIDDHGLFHIGGVQKRGRRCCFDPRAFARWSAGDTDFPLVNALMHQLTDTGWMSNRGR 343
Query: 446 QIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQA 505
QI S L+ ++G DWR GA +FE L+DYD SNYGNW Y AGVG DPR R+F++ KQA
Sbjct: 344 QIVASCLINELGQDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRGGRHFNLDKQA 403
Query: 506 QNYDREGEYVAYW 518
+D E + W
Sbjct: 404 AQHDPENIFTTKW 416
>gi|410861787|ref|YP_006977021.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii AltDE1]
gi|410819049|gb|AFV85666.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii AltDE1]
Length = 435
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 161/443 (36%), Positives = 232/443 (52%), Gaps = 30/443 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR+DLR+ D A+ + + V Y +D + FGF G R FL++
Sbjct: 17 GVFWFRHDLRLHDQPAIAELCTAVSQVTFTYILDDKCFDDA-AFGFSPMGKHRHTFLLQT 75
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L+DL++ L RG LLI G E I L + G + + +E
Sbjct: 76 LSDLKQQLNQRGHELLILKGNTAECIVQLLNAGGYTHLGVSQHCGFDE------------ 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTT--MYHLDDIPFDHSSLPDVYTHFRKSIEAKCT--- 257
++Q N L++I T ++ + +PFD +PDV++ FR+ +E CT
Sbjct: 124 ----TAQLNTVKRFFNTLRVIETPTFGLFDAEVLPFDIEGMPDVFSPFRRKVEKHCTPLP 179
Query: 258 -VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
+ ++P F P +D I +EL PK S F+GGESAAL + Y +
Sbjct: 180 VLERIAQLPDGFMPN---ID---KQYILDIELSLPKPSPS-SFIGGESAALNHLETYLFD 232
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
YKETRN + STK S WLA+GS+S R + +V+ +E+ NDSTYWV FE
Sbjct: 233 WKAAATYKETRNTLDTWKDSTKLSAWLANGSLSAREVIRQVQRFEQTIEKNDSTYWVYFE 292
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L+WR++F ++ KYG F G + + D + F W G TGY ++DA M++L+
Sbjct: 293 LLWREFFHWLQCKYGAKWFRFSGIQGRKPTTCHDPETFSRWCKGETGYRIVDACMRQLAE 352
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG+MSNRGRQ+ S V ++ DWR GA WFE L+DYD SN+GNW Y AGVG+DPR
Sbjct: 353 TGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYDVGSNWGNWLYLAGVGSDPRGH 412
Query: 497 RYFSIPKQAQNYDREGEYVAYWL 519
R F++ KQ + YD +G + WL
Sbjct: 413 RQFNLQKQTEIYDPDGRFRKAWL 435
>gi|444377559|ref|ZP_21176769.1| Cryptochrome [Enterovibrio sp. AK16]
gi|443678340|gb|ELT85011.1| Cryptochrome [Enterovibrio sp. AK16]
Length = 427
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 155/443 (34%), Positives = 238/443 (53%), Gaps = 37/443 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++WFR+DLR+ DN AL+ + L VY +DP + HF G R +FL +
Sbjct: 3 GLLWFRHDLRLADNPALVALSRRCDQALMVYVIDPEWFRPA-HFQSRHLGRFREEFLYQS 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L + L R L+++ G P ++IP L K G + E + + L
Sbjct: 62 LRALERELKKRKQRLVVKVGNPLQVIPDLCKKHGIDLLAVTDHPGVYERQQVAYLSRTLG 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V S+S +++ + FD ++ P ++ FRK +E K + CI
Sbjct: 122 CEVSVSES---------------FSLFLRSQLTFDKTTFPQTFSQFRKHVE-KQNILPCI 165
Query: 263 RIPSSFGPPPSVVD----WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
I + P + + WG + L +P + GGE + + ++N++FWK
Sbjct: 166 PISAPESLPKHIDERRDIWGGQEFVYDL---TP-------YHGGEDSGMVQLNQFFWKTQ 215
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
LK YKETRN + G +S++ S WLA+GSISPR + E+ +YE +DST + EL+
Sbjct: 216 GLKNYKETRNGLDGWQFSSRLSAWLANGSISPRIVAAELDNYEYRHGRSDSTESMYAELL 275
Query: 379 WRDYFRFISLKYGNSLFHLGG---PRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
WR+YF+++ +G S+F G R L + Q+ +++W G T YP+++A M++L+
Sbjct: 276 WREYFQWMMHYHGASMFAFEGIKNKRPLTTYYCQN---YKAWEQGTTEYPIVNACMRQLN 332
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+MSNRGRQI S LV ++G+DWR GA +FE L+D+D +NYGNW Y AGVG DPR
Sbjct: 333 QTGYMSNRGRQIVASCLVNELGVDWRFGAAYFEQQLIDFDVATNYGNWQYLAGVGADPRG 392
Query: 496 DRYFSIPKQAQNYDREGEYVAYW 518
R+F++ KQ + YD EG +V W
Sbjct: 393 QRHFNLEKQTEIYDPEGTFVEKW 415
>gi|409124205|ref|ZP_11223600.1| DASH family cryptochrome [Gillisia sp. CBA3202]
Length = 465
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 156/441 (35%), Positives = 229/441 (51%), Gaps = 24/441 (5%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWF+NDLR+ DNEAL +A + + ++ YC++ Q GF K R +FL E
Sbjct: 4 GLVWFKNDLRLHDNEALCEAISNCDELIFCYCLEEILFQNL-DLGFRKADINRFKFLEES 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ +L+ L G +LLI ++ IP + A+Y + E EEL + V K L
Sbjct: 63 VTNLQTKLEKLGGHLLISTKSAKDFIPRIVAEHNITAIYGEMEYAPEELALTGNVEKMLP 122
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V + WG T+YH+DDIPF + +P +R + + R
Sbjct: 123 DVTFN--------------FYWGKTLYHIDDIPFSIADIPLTSKAYRIPVSQESNPRASY 168
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV-GGESAALGRVNEYFWKKDLLK 321
PS ++ P + FV GGE L R+ Y ++ +LL
Sbjct: 169 LSPSYLNADADILS-TKFPPYSLYGFTREEYEMANTFVEGGEDNGLKRLYHYTFETELLT 227
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
Y+ TRN LG DYS+KFSP+LA G ISPR IY VK YE+ N ST+W++FEL+WRD
Sbjct: 228 GYRWTRNRSLGIDYSSKFSPYLALGCISPREIYRTVKHYEKVVKKNQSTWWIVFELVWRD 287
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF F +K+G+++F G + K+ ++ FE W G TG P IDA+M++L+ TG+MS
Sbjct: 288 YFTFKGMKFGSNIFRTEGFKNRNIKFKNNRNHFEKWCRGLTGIPFIDAHMRQLNETGYMS 347
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGR S+L+ D+ IDW GA +FE+ L+DYD +N+ NW A + Y++
Sbjct: 348 NRGRVNCSSYLIHDLKIDWTWGAAYFESKLIDYDVSANWLNWHVQA-------YEIYYTN 400
Query: 502 PKQAQNYDREGEYVAYWLPQL 522
P N + E++ W+P L
Sbjct: 401 PVNQSNKYKAQEFIRKWIPVL 421
>gi|88704316|ref|ZP_01102030.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
gi|88701367|gb|EAQ98472.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
Length = 434
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 167/444 (37%), Positives = 233/444 (52%), Gaps = 28/444 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AI WFRNDLR+ DN L++A + E++L R T G R +F+ E
Sbjct: 3 AIYWFRNDLRLHDNPGLVEAAKADELLLLYLWPLQRAWCNTQGLG-----EQRERFITES 57
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L+ +L G +LL+ G PE +IP L + +G AV+A + S E R++R+ L
Sbjct: 58 LKALQDDLQPLGQSLLVLQGSPELVIPDLVRDYGVDAVHASQCAGSYETRAVRVLRERLH 117
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V T H G T++ DI LP ++ FR+ +E
Sbjct: 118 IPV---------TEHA------GNTLFRRSDIKALCPELPRSFSPFRRKVEKNLEPLKPS 162
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
R PPP+V ++ + K G+ GG SA R+ + F ++
Sbjct: 163 RDLPQLPPPPAVT-------FHRIPDAAVKPPVGLPLRGGSSAGQRRLKQ-FLHSGAIRS 214
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YKETRN + + S+ SPWLA GS+S R + V +E + AN+STYW++FEL+WR+Y
Sbjct: 215 YKETRNCLDPLEGSSTLSPWLALGSLSAREVAAAVHEHEAQEGANESTYWLVFELLWREY 274
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F +L+ G SLF GG + + + + F W G T +PL++A M +L TG+MSN
Sbjct: 275 FFHRALQDGVSLFRHGGREGKVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSN 334
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
RGRQIA S L+ D GIDWR GA +FE L+DYD SNYGNW Y AGVG DPR R F+I
Sbjct: 335 RGRQIAASCLIHDFGIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRGGRAFNIE 394
Query: 503 KQAQNYDREGEYVAYWLPQLKALP 526
KQ YD +G ++A W + A P
Sbjct: 395 KQTAQYDPDGVFIAKWDGERAAQP 418
>gi|308126141|ref|ZP_05908184.2| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
gi|308110402|gb|EFO47942.1| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
Length = 445
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/440 (36%), Positives = 226/440 (51%), Gaps = 26/440 (5%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQF 138
K + + WF DLR+ DN L+ A + ++ +YC P + +HF T G R +F
Sbjct: 3 KKIGLYWFTFDLRLHDNLLLVNASSFLDELVCLYC-RPSVTPFLHHFAQEATLGRARQKF 61
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
+ L +L L G L P + + + G +YA S+E ++ ++
Sbjct: 62 IDASLCELNDALGQLGQRLWTLDLPPYQALRYAIQYLGVTHLYADAMAGSDEQSILHKLQ 121
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+V+ + +++ +PF LP+ +T FRK +E +
Sbjct: 122 DEYPHLVIVQHAV--------------RSLFDESKLPFTLPDLPETFTQFRKCVEG-IDI 166
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
I PS P P +P L S + F GGE + L YF
Sbjct: 167 AHPIDAPSRLPPMPKD---AQLP-----TLSSFYFDESALFSGGEWSGLAHCRRYF-SSG 217
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L YKETRN + G YSTKFSPWLA G +SPR IY +K YE+ + ANDSTYW+ FEL+
Sbjct: 218 LASSYKETRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQYEQTQGANDSTYWIYFELL 277
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YF + + Y LF GG R S F+ W++G T YP+++A M +L+ TG
Sbjct: 278 WREYFYWYARCYQQRLFRFGGIRNQPPLTSFYAHRFQQWKNGTTQYPIVNACMHQLNHTG 337
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD CSN+GNW Y AGVG DPR R
Sbjct: 338 YMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVCSNWGNWQYLAGVGADPRGSRQ 397
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F++ KQ Q YD E++ W
Sbjct: 398 FNLEKQTQMYDPNHEFIERW 417
>gi|407939958|ref|YP_006855599.1| DNA photolyase, FAD-binding protein [Acidovorax sp. KKS102]
gi|407897752|gb|AFU46961.1| DNA photolyase, FAD-binding protein [Acidovorax sp. KKS102]
Length = 438
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 168/452 (37%), Positives = 238/452 (52%), Gaps = 38/452 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDS-SEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR+DLR+ D AL A S + +LPV C+ P ++T +GF + A R F
Sbjct: 5 LFWFRSDLRLHDQPALRAALTSGATHLLPVVCL-PAPDEST-PWGFARVCAHRRAFTAAA 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCS-EELNVERLVRKNL 201
L L + + G LLI P + LAK+ GA V + E+ V L L
Sbjct: 63 LRGLHQRMRALGNPLLICQAPPATALLQLAKAVGATTVVCEDIAAPYEQAQVAALRAAGL 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
Q ++ +W +++ +P+ LP V+T FR+ +E
Sbjct: 123 Q-----------------VRTVWQSSLLPPSRMPWPVDQLPGVFTSFRQKVERAGITPAV 165
Query: 262 IRIPSSFGP-----PPSVVDW-GSVPLIEQLELHSPKVSKGMRFV---------GGESAA 306
+ P SV+ G+ E ++L +P R G E AA
Sbjct: 166 PLPAPARLLPPPDVPVSVLQAVGAEQGAEAIQLPAPPQGSDARSSFPYGTPGCDGSEVAA 225
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
LG + +Y +K L YK+TRN + G DYS+KFSPWLA+G++SPR I ++K++ER+ A
Sbjct: 226 LGHLAQYLARK-LPHSYKDTRNGLTGLDYSSKFSPWLATGALSPRQIDADLKAFERDHGA 284
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
ND TYW+ FEL+WRDYFR + L+YG L+ G +L + + FE W G TG PL
Sbjct: 285 NDGTYWLWFELLWRDYFRLLHLQYGAVLYRARGLSELPPA-PHNPRGFERWCRGDTGQPL 343
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M+EL+ TG++SNR RQ+A S+L+ D+ DWR GA WFE+ L+DYD SN NW Y
Sbjct: 344 VDAAMRELAATGYLSNRLRQVAASYLIYDLRGDWRAGAAWFESQLVDYDVYSNQANWLYI 403
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
AG G DPR R F+ KQAQ++D +G Y W
Sbjct: 404 AGRGTDPRGGRRFNPIKQAQDHDADGSYRRLW 435
>gi|269104335|ref|ZP_06157031.1| deoxyribodipyrimidine photolyase single-strand-specific
[Photobacterium damselae subsp. damselae CIP 102761]
gi|268160975|gb|EEZ39472.1| deoxyribodipyrimidine photolyase single-strand-specific
[Photobacterium damselae subsp. damselae CIP 102761]
Length = 436
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/433 (34%), Positives = 230/433 (53%), Gaps = 25/433 (5%)
Query: 87 FRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADL 146
F+NDLR+ DN ALL A + +L VYC+ P H Y + GALR QFL++ L L
Sbjct: 8 FQNDLRLHDNLALLNATTQCDRLLLVYCL-PYHQANRYPYHIHNYGALRLQFLLQSLHQL 66
Query: 147 RKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVL 206
+ L + LL+ P I+P L + H + + ++ E + + + +
Sbjct: 67 HQQLQDLEQELLVFLEHPLHILPQLISQYDIHTIISSEQVGYYENQTWQTLNQRYPYIEF 126
Query: 207 SSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
W T T+ H + +PFD + LP ++ FR+ +E + P
Sbjct: 127 KQ---------------WPTHTLLHKEQLPFDLNKLPSTFSQFRRQVEH---IELTPLTP 168
Query: 266 SSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKE 325
PPS + +++ H PK S F+GGE+ A+ + YF K D YKE
Sbjct: 169 YISHLPPSPNKIAHISILDSFISH-PKPSD---FIGGEATAISHLTAYF-KSDKASRYKE 223
Query: 326 TRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRF 385
TRN++ G DYSTKFSPWLA G +S + + E+ Y + S+ W+ FEL+WR+YF++
Sbjct: 224 TRNDLDGWDYSTKFSPWLAQGCLSAKRVIYELNQYHHQVDETPSSQWIKFELLWREYFQW 283
Query: 386 ISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGR 445
+ + +F G + S + F+ W + T YPL++A M++L TG+MSNRGR
Sbjct: 284 YAHHHQQKIFQFKGIKSSSPHTSFYPERFKRWSESNTPYPLVNALMRQLITTGYMSNRGR 343
Query: 446 QIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQA 505
QI S V ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DP+ +R+F++ KQ
Sbjct: 344 QIVASCFVNELELDWRYGAAFFEQHLIDYDIASNWGNWQYLAGVGADPKGNRHFNLDKQT 403
Query: 506 QNYDREGEYVAYW 518
+ +D +G+++ W
Sbjct: 404 ELFDPQGQFITKW 416
>gi|262275892|ref|ZP_06053701.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
hollisae CIP 101886]
gi|262219700|gb|EEY71016.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
hollisae CIP 101886]
Length = 427
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 153/441 (34%), Positives = 237/441 (53%), Gaps = 33/441 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR+DLR+ DN AL+ L V+ ++P + H+ G R +FL +
Sbjct: 3 GLFWFRHDLRLADNPALITLSRRCSKALMVFVINPEWFRPA-HYQSRHLGRFREEFLYQS 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L + L L+++ G P +IP L K G V E + + L+
Sbjct: 62 LRSLERELKKHKQRLVVKVGNPLLVIPDLCKKHGIDMVAMTDHPGVYERQQVAYLSRTLR 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V S+S T++ + FD ++ P ++ FRK +E K + CI
Sbjct: 122 SEVSVSES---------------FTLFLRSQLAFDKTTYPATFSQFRKHVE-KQNILPCI 165
Query: 263 RIPSSFGPPPSVVD-----WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
I S+ P+V+D WG + L +P + GGE A + ++N++FWK
Sbjct: 166 PI-SAPDSLPTVIDERRDIWGGQEFVYDL---TP-------YHGGEDAGMVQLNQFFWKT 214
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
LK YK+TRN++ G +S++ S WLA+GSISPR + E+ +YE +DST + EL
Sbjct: 215 QGLKNYKQTRNDLDGWQFSSRLSAWLANGSISPRTVAAELDNYEYRHGRSDSTQSMYAEL 274
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR+YF+++ YG +F G +K + + +++W G T +P+++A M++L+ T
Sbjct: 275 LWREYFQWMMHYYGADMFAFAGIKKTRPLTTYYCQNYKAWEQGTTEFPIVNACMRQLNQT 334
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G++SNRGRQI S LV ++G+DWR GA +FE L+D+D +NYGNW Y AGVG DPR R
Sbjct: 335 GYISNRGRQIVASCLVNELGVDWRFGAAYFEQQLIDFDVATNYGNWQYLAGVGADPRGQR 394
Query: 498 YFSIPKQAQNYDREGEYVAYW 518
+F++ KQA YD GE+V W
Sbjct: 395 HFNLEKQADVYDPNGEFVERW 415
>gi|254468682|ref|ZP_05082088.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
proteobacterium KB13]
gi|207087492|gb|EDZ64775.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
proteobacterium KB13]
Length = 416
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 164/439 (37%), Positives = 234/439 (53%), Gaps = 35/439 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I WFRN+LR+ DN L++ S + VY V+ RH + + +FLI+ L
Sbjct: 5 IFWFRNNLRIHDNYPLVQCIKDSTSISFVYIVN-RHLRV-----LDGHENHKNKFLIDAL 58
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L+ NL + G L I G+P +I SLAK + + +Y +K E + E + Q
Sbjct: 59 NQLKINLSDLGHELYIIEGEPSDIFSSLAKQYQINKIYCEKIVSPYETDEELSIT---QT 115
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK---CTVRG 260
VLS W +T+ ++DD+ FD LPD +T FRK +E K T+
Sbjct: 116 DVLS---------------FWDSTLLNIDDLDFDVIDLPDTFTTFRKKVELKPITATLYE 160
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ +P P ++ + S L + V + E+ A V +YF K L
Sbjct: 161 GLTLP----KPANLSNINSYQLPNFDIKYRGSVDFLNHYTICENGAQKYVKDYFSDKKAL 216
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
+ YK+TRNE++G D+STKFS WLA G IS R I+ +K+YE AN+STYW+LFEL+WR
Sbjct: 217 E-YKQTRNELMGNDFSTKFSVWLAHGLISARQIFTSLKNYEESNGANESTYWILFELLWR 275
Query: 381 DYFRFISLKYGNSL-FHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
DYFR + KY L F G K + SQD + + T I+A ++EL +GF
Sbjct: 276 DYFRLLHFKYNRKLYFQFGLKNKEINETSQDN--ISNLEEANTESSFINAGIRELQNSGF 333
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
+SNR RQI SF++ +M IDWR+GA++F+ L+D+D SN GNW Y AG G DPR R F
Sbjct: 334 LSNRMRQILASFIIFEMKIDWRIGADFFQKYLIDFDIYSNQGNWIYIAGYGTDPRGGRRF 393
Query: 500 SIPKQAQNYDREGEYVAYW 518
++ KQ YD + +Y W
Sbjct: 394 NVEKQKNTYDIDNQYEMCW 412
>gi|254227923|ref|ZP_04921353.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|262396094|ref|YP_003287947.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
Ex25]
gi|151939419|gb|EDN58247.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|262339688|gb|ACY53482.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
Ex25]
Length = 444
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 163/448 (36%), Positives = 231/448 (51%), Gaps = 42/448 (9%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTY--HFGFPKT-GALRA 136
K + + WF NDLR+ DN L+ A + ++ +YC R S T Y HF + G +
Sbjct: 3 KKIGLYWFTNDLRLHDNPLLIDACAEMDELICLYC---RPSVTPYLQHFAQETSLGRAKL 59
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
QFL L +L ++L G L P + I FG +YA S+E
Sbjct: 60 QFLEASLNELNQSLAKLGQRLWTVELTPYQAIKYAISHFGITHIYADAFAGSDE------ 113
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA-- 254
++ L++ + K T H +K T+ + +PF+ LP +T FRK +E
Sbjct: 114 -QQALERAI-------KGTPHVNIKQQAIRTLLREEQLPFELRQLPATFTKFRKQVEGLD 165
Query: 255 ----KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRV 310
+V +PS P + + + F GGE + L
Sbjct: 166 LSQPYESVHALPPVPSGMNFPTATTYYFDTKPV---------------FDGGELSGLEHC 210
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
YF L YK+TRNE+ G +YSTKFSPWLA G +SP IY +K YE++ ANDST
Sbjct: 211 RRYF-ASSLASEYKQTRNELDGMEYSTKFSPWLAHGCVSPTIIYAMLKQYEQKNGANDST 269
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW+ FEL+WR+YF + + KY LF GG S + F+ W+ G T +P+++A
Sbjct: 270 YWIYFELLWREYFYWYARKYQQKLFRFGGIANQPPLTSFYAQRFKQWKKGETPFPIVNAC 329
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M +L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG
Sbjct: 330 MHQLNKTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVG 389
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYW 518
DPR R F++ KQ Q YD + ++ W
Sbjct: 390 ADPRGSRQFNLEKQTQTYDPDFSFIDKW 417
>gi|372269942|ref|ZP_09505990.1| DASH family cryptochrome [Marinobacterium stanieri S30]
Length = 440
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 165/446 (36%), Positives = 232/446 (52%), Gaps = 40/446 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ WF D+R+ DN AL +A + +L VY D R + +F + G R FL E
Sbjct: 3 TGLFWFTQDIRLDDNPALQQAARQCDQLLLVYVHDSRLERAG-NFNAARMGRARRDFLFE 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LADL + L G LL+ G P E++ L + ++RL
Sbjct: 62 GLADLGQQLDACGQQLLMFTGDPIEVLSELVSRY----------------RIDRLFCTRS 105
Query: 202 QQVVLSSQSNDKSTNHPQL--KLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA-KCTV 258
V Q + + P L + G T+ FD S L ++ F S A + V
Sbjct: 106 SGVYEQRQLSSLQSRFPHLNASIRDGYTL-------FDQSQLTEIVDPFPVSFSAFRRRV 158
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR------FVGGESAALGRVNE 312
+ IP P V+D +P ++E ++S F GGE AA +
Sbjct: 159 EKALDIPEPLSP---VLD---LPPALKIEARGEQLSTSAGYHNDTWFAGGEQAAQSHLER 212
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
YF L YK+ RNE+ G + T+FSPWLA GS+SPR I +++K YE + AN+STYW
Sbjct: 213 YF-SSLLPSTYKQVRNELDGLENGTRFSPWLAQGSLSPRRIMQQLKQYEARQGANESTYW 271
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
+ FEL+WR+YF++ + +G L+HL G + S + F+SW +G T +PL++A M+
Sbjct: 272 IFFELLWREYFQWYAHHHGVRLYHLKGIQGRSPLTSFYPQRFKSWCEGTTSWPLVNACMR 331
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L TG+MSNRGRQI S LV ++ +DWR GA WFE LLDYD SN+GNW Y AGVG D
Sbjct: 332 QLKQTGWMSNRGRQIVASCLVNELALDWRYGAAWFEQELLDYDSASNWGNWQYLAGVGAD 391
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYW 518
PR R F I KQ + YD +G ++ YW
Sbjct: 392 PRGKRRFDIAKQTRQYDPDGRFIEYW 417
>gi|343501237|ref|ZP_08739116.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii ATCC 19109]
gi|418478141|ref|ZP_13047254.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342818554|gb|EGU53413.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii ATCC 19109]
gi|384574140|gb|EIF04614.1| deoxyribodipyrimidine photolyase [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 423
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 156/443 (35%), Positives = 227/443 (51%), Gaps = 37/443 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQF 138
K + W+ NDLRV DN L +A D + + V+C +P + H+ + G + F
Sbjct: 4 KTAGLYWYTNDLRVADNCLLARAVDQVDTLHCVFC-NPSLTSFLKHYSREEHFGCAKQVF 62
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L + + L LM L L I + L + + + S+E N +R
Sbjct: 63 LEQSIDALSSALMQHNLTLQIESTPALVFLTDLIEKLEITHFFCNQSAGSDEQNTLVQLR 122
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ + + Q + T+++L +PFD S +P +T FRK +E+ ++
Sbjct: 123 QKFPAIQVVQQPVN--------------TLFNLQQLPFDVSEIPVTFTKFRKQVES-LSI 167
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS--KGMRFVGGESAALGRVNEYFWK 316
+ I S P P+V+ + F GGES + +YF
Sbjct: 168 EPVVGINSEHDNCPF-----------------PRVAGEDELVFCGGESTGQEHIKDYF-A 209
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
L YK+TRN + G +STKFSPWLA G ISPR I +++ YER ANDSTYW+ FE
Sbjct: 210 TSLASEYKKTRNGLDGMLFSTKFSPWLALGCISPRLIVSKLRDYERRNGANDSTYWIYFE 269
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L+WR+YF + K G LF S D + FESW+ G TGYP++DA M +L +
Sbjct: 270 LLWREYFYWHGRKQGKQLFFDSRKAGDTRMSSGDIQAFESWKQGTTGYPIVDACMNQLRL 329
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
+G+MSNRGRQ+A S L+ ++G+DWRMGA +FET L+DYD SN+GNW Y AG+G P
Sbjct: 330 SGYMSNRGRQLAASCLIYELGLDWRMGAAYFETQLIDYDVSSNWGNWQYIAGIGAAPNTT 389
Query: 497 RYFSIPKQAQNYDREGEYVAYWL 519
R F + Q Q YD +++A W+
Sbjct: 390 RQFDLEYQTQMYDPNCDFIAKWI 412
>gi|119502978|ref|ZP_01625063.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2080]
gi|119461324|gb|EAW42414.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2080]
Length = 433
Score = 264 bits (675), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 161/434 (37%), Positives = 244/434 (56%), Gaps = 30/434 (6%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
WFRNDLR+ DN A+ + +++ +L VY + P+ G GA R +FL E L +
Sbjct: 6 WFRNDLRLRDNPAI-ASHTAADSLLCVYLM-PKPRPWCNLVG---VGAQRERFLRESLQE 60
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
L L +G L++ G PE ++P L F V S+E RK L +
Sbjct: 61 LHLQLAEQGQALMVLEGSPELVLPDLVARFAITEVSTTFTPGSQE-------RKTLAYL- 112
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
D+ P L++ G +++ D+PF+ LP V++ FR+++E K VRG P
Sbjct: 113 ------DQKLPVP-LQVHRGNSLFEPSDLPFELQDLPKVFSGFRRAVE-KLNVRGPS--P 162
Query: 266 SS-FGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYK 324
S+ PPP + ++P ++ P + + GG SA L R+ ++ + + YK
Sbjct: 163 STEVLPPPPAAQFDAIP---PADISKPTM---LPLPGGRSAGLRRLRQFVFDDRSITQYK 216
Query: 325 ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFR 384
ETRN + D S+ SPWLA+G++S R + EV +ERE ++N+STYW+ FEL+WR++F
Sbjct: 217 ETRNCLDALDGSSTLSPWLANGNLSVREVAHEVFRFERENLSNESTYWLFFELLWREFFH 276
Query: 385 FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRG 444
+ ++ +F +GG + D + F W G T +PL++A M++L TG+MSNRG
Sbjct: 277 WRAVVDDAQMFKIGGGSGKIRANTFDPRNFARWCAGDTNFPLVNALMRQLVATGWMSNRG 336
Query: 445 RQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQ 504
RQIA S L+ ++ +DWR GA +FE L+DYD SNYGNW Y AGVG+DPR R+F+I KQ
Sbjct: 337 RQIAASCLINELKVDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGSDPRGGRHFNIDKQ 396
Query: 505 AQNYDREGEYVAYW 518
A +D +G + A W
Sbjct: 397 AGQWDPQGVFTAKW 410
>gi|56459233|ref|YP_154514.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
gi|81821701|sp|Q5QXE0.1|CRYD_IDILO RecName: Full=Cryptochrome DASH
gi|56178243|gb|AAV80965.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
Length = 449
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 163/449 (36%), Positives = 235/449 (52%), Gaps = 31/449 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTY-HFGFPKTGALRAQFLI 140
+ + FRNDLRV DN AL +A SE ++ +C +P +Q Y H+G P G R FL
Sbjct: 16 LGLFVFRNDLRVEDNLALYEAAQRSETLICCFCFNP--TQNKYGHYGIPAMGKHRFTFLQ 73
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ L LR L RG L++ G + I+ L A++ + + ERL
Sbjct: 74 QSLKQLRTELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQH----QGYYERLQLGL 129
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA---KCT 257
LQQ ++ N T++ ++PF+ + LP+ ++ FRK +E +
Sbjct: 130 LQQRFPFLPFHETPNN----------TLFSEQELPFELADLPETFSQFRKKVEPLSRNFS 179
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
V+ +PS P + + EL S F GGE AAL + YF
Sbjct: 180 VQPVNALPSL----PKNISYPGFKAETLNELASDD------FEGGERAALTHLTSYF-SG 228
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ YK+TRN + STKFSPWLA G +S R I +++YE E N+S+YW+ FEL
Sbjct: 229 ESAGTYKQTRNALDDFSSSTKFSPWLAQGCLSVRQIMAALRAYETEFGENESSYWISFEL 288
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR+YF + +LK+G LF G K S + F+ W G T YP+++A MK+L+ T
Sbjct: 289 LWREYFFWYALKHGKRLFAFSGLSGKSPKTSFYSERFQKWCSGNTPYPIVNACMKQLNAT 348
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQ+ S V ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DPR R
Sbjct: 349 GYMSNRGRQLVASCFVHELSLDWRYGAAYFEQQLIDYDVSSNWGNWQYLAGVGADPRGHR 408
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALP 526
F++ KQ + YD + E++ W L P
Sbjct: 409 QFNLEKQTERYDPDNEFIERWAGDLSGQP 437
>gi|323493058|ref|ZP_08098192.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
gi|323312706|gb|EGA65836.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
Length = 449
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 171/454 (37%), Positives = 242/454 (53%), Gaps = 38/454 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L KA + ++ +YC V P R+SQ + PK
Sbjct: 3 KVIGLYWFTNDLRVHDNPLLSKAAAEVDQLICLYCYPSVSPYLARYSQQA-KWSEPKLQF 61
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
L A + CL +L N +N+ LL+ P I L G +Y +E
Sbjct: 62 LDAS--LHCL-NLSLNALNQ--RLLVVDSHPYHAIKDLVYGLGVSHLYVDAVAGCDE--- 113
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
Q ++ S ++ + + Q ++ T++ L+ +PF+ S+LPD +T FRK +E
Sbjct: 114 --------QSIIDSLKAEFDALDVAQKEV---RTLFTLEQLPFELSALPDTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPP-PSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
+ +P S+ PS+ D S+P I L H F GGE A L
Sbjct: 163 PLV-----VPLPISWVKRLPSLPDTLSLPGIS-LTHHG----GSALFEGGEQAGLAHCRR 212
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
YF YKETRN + G DYSTKFSPWLA G +S + IY +K YER AN+STYW
Sbjct: 213 YF-SSACPSEYKETRNALDGLDYSTKFSPWLAHGCLSAKTIYAMLKRYERLNGANESTYW 271
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
+ FEL+WR+YF + + +Y LF GG R S F+ W++G T + +++A M
Sbjct: 272 IYFELLWREYFYWYARRYRQKLFRFGGIRNQPPLTSFYAHRFQQWKNGQTPFAIVNACMH 331
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+MSNRGRQ+ S L+ ++G+DWR GA +FE+ L+DYD SN+GNW Y AGVG D
Sbjct: 332 QLNQTGYMSNRGRQLVASCLIHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGAD 391
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
PR R F++ KQ Q YD E++ W + A P
Sbjct: 392 PRGSRQFNLEKQTQMYDPYQEFIDRWQGRCDASP 425
>gi|264678127|ref|YP_003278034.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
gi|262208640|gb|ACY32738.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
Length = 473
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 165/447 (36%), Positives = 245/447 (54%), Gaps = 31/447 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWD-SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
++W RNDLR+ D L A ++ +LPV C+ ++T + GF + G R +L
Sbjct: 45 TVLLWLRNDLRLHDQPVLHAACRMGAQYLLPVLCLPDIQARTRW--GFARIGQHRRTWLT 102
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETC-SEELNVERLVRK 199
+ + +L +N LLI + + +P+LA++ GA + + E+ VE L
Sbjct: 103 KTIQNLAENFHELRSQLLILNAPAAKALPALAQALGADIIVCEDIAAPDEQAEVEALRAS 162
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE-AKCTV 258
LQ + +W +++ H D +P+ LPDV+T FR+++E AK
Sbjct: 163 GLQ-----------------VHTVWHSSLLHQDQLPWPVRQLPDVFTPFRQAVEHAKLQP 205
Query: 259 RGCIRIPSSFG--PP--PSVVDWGSVPLIEQLELHSPKV---SKGMRFVGGESAALGRVN 311
+ +P + PP P+ +P + L SP + S GGESAAL +
Sbjct: 206 YPPLPVPEALPRVPPHIPNEYLREQIPALSALAGPSPSLDTRSAIALLQGGESAALAHLR 265
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
+Y + L YK TRN ++G DYS+K+S WLA+G++SPR Y E++ +E R A +S+Y
Sbjct: 266 QYL-ARGLPHSYKRTRNGLVGLDYSSKWSLWLATGALSPRQAYAELRQFEATRGATESSY 324
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
W+ FEL+WRDYFRF+ +++G +L+ G E D + F +W G TG L+DA M
Sbjct: 325 WLWFELLWRDYFRFLHMQHGRALYRARG-LGPELATPHDDQNFAAWCSGQTGKTLVDAAM 383
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL+ TG++SNR RQ+A S+L+ D+G DWR GA WFE+ LLDYD SN GNW Y AG G
Sbjct: 384 RELAATGYLSNRLRQVAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYIAGRGT 443
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYW 518
DP+ R F KQA YD +G Y W
Sbjct: 444 DPQGGRRFDPVKQAATYDADGAYQRLW 470
>gi|153837520|ref|ZP_01990187.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
gi|149749116|gb|EDM59921.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
Length = 445
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 159/440 (36%), Positives = 224/440 (50%), Gaps = 26/440 (5%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQF 138
K + + WF DLR+ DN L+ A + ++ +YC P + +HF T G R +F
Sbjct: 3 KKIGLYWFTFDLRLHDNLLLVNASSFLDELVCLYC-RPSVTPFLHHFAQEATLGRARQKF 61
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
+ L +L L G L P + + + G +YA S+E ++ ++
Sbjct: 62 IDASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLGVTHLYADAMAGSDEQSILHKLQ 121
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+V+ + +++ +PF LP+ +T FRK +E +
Sbjct: 122 DEYPHLVIVQHAV--------------RSLFDESKLPFTLPDLPETFTQFRKCVEG-IDI 166
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
I PS P P +P L S + F GGE + L YF
Sbjct: 167 AHPIDAPSRLPPTPKD---AQLP-----TLSSFYFDESALFSGGEWSGLAHCRRYF-SSG 217
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L YKETRN + G YSTKFSPWLA G +SPR IY +K YE+ + ANDSTYW+ FEL+
Sbjct: 218 LASSYKETRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQYEQTQGANDSTYWIYFELL 277
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YF + + Y LF GG R S F+ W++G T YP+++A M +L TG
Sbjct: 278 WREYFYWYARCYQQRLFRFGGIRNQPPLTSFYAHRFQQWKNGTTPYPIVNACMHQLDHTG 337
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DPR R
Sbjct: 338 YMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRGSRQ 397
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F++ KQ Q YD E++ W
Sbjct: 398 FNLEKQTQMYDPNHEFIVRW 417
>gi|392547623|ref|ZP_10294760.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas rubra ATCC
29570]
Length = 454
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 164/450 (36%), Positives = 243/450 (54%), Gaps = 38/450 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHS-QTTYHFGFPKTGALRAQFLIE 141
+ WF DLR+ DN AL A +S+ +L VY ++PR+ QT YH G +A F+ +
Sbjct: 4 TLYWFTQDLRLDDNLALDFATQNSDHILFVYVINPRYRIQTNYHCKL--LGDRQATFIAD 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L L + G +LL+ G+P +++P L + V ++ E + +RK L
Sbjct: 62 SLLTLSSQLDSCGHSLLVVEGEPHQVLPHLVSKYEIDQVICAEQVGLYERKSVQKIRKEL 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDV------YTHFRKSIE-A 254
V L S W T+ F+H+ + V +T FRK +E A
Sbjct: 122 GAVPLHS--------------FWQHTL-------FEHTQIQTVSRDLGNFTQFRKRVEKA 160
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK------GMRFVGGESAALG 308
+V R S P P + + L + H+ + + + F GE AA
Sbjct: 161 PLSVVTLCRFDPSRLPAPLITVSSANELGILHQWHAQRQDRLTETRVPLDFPAGEEAAQA 220
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND 368
+ +YF +++ YKETRN + G STK SP+LA G++SPR ++ +++E++ VAN+
Sbjct: 221 HLRDYF-DSGVVRRYKETRNALDGWLNSTKMSPYLALGNLSPRQVWWATEAFEKQVVANE 279
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
STYW+ FEL+WR+YF+++ LK G LF G K + + + F W G T PL++
Sbjct: 280 STYWIKFELLWREYFQWLCLKLGPQLFRFQGLAKSKPLTTFMPERFTRWCQGNTPVPLVN 339
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M +L+ TG+MSNRGRQIA S+ V ++G+DWR GA +F+ LLD+D SN+GNW Y AG
Sbjct: 340 ALMNQLNETGYMSNRGRQIAASYFVNELGLDWRYGAAYFQQQLLDHDVASNWGNWQYIAG 399
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
VG DPR R+F+I KQAQ YD G +V W
Sbjct: 400 VGVDPRGGRHFNIEKQAQLYDERGLFVQKW 429
>gi|331006214|ref|ZP_08329536.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
gi|330419971|gb|EGG94315.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
Length = 477
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 165/464 (35%), Positives = 242/464 (52%), Gaps = 46/464 (9%)
Query: 82 VAIVWFRNDLRVLDNEALL---KAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQF 138
++WF +DLR+ DN L K ++ +L +YC+D + FG + R F
Sbjct: 10 TTLLWFTHDLRIHDNALLFYANKINNNKHRLLCLYCIDEEWFEQD-RFGLQRIATHRWNF 68
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L+ L L L G L+I G P EII L + + V + E +
Sbjct: 69 LVGSLHALNTELQALGQQLVIAKGNPTEIISDLLSRYSINTVISSNTVGYNE-------Q 121
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTT--MYHLDDIPFDHSSLPDVYTHFRKSIEA-K 255
Q++ S +P L I T ++ +PF ++LPD ++ FR+ IE+ K
Sbjct: 122 AYWQEI---------SNKYPHLAFIQQETFTLFAESQLPFLLNNLPDNFSKFRRLIESTK 172
Query: 256 CTVRGCIRIPSSF-GPPPSVVDWGSVPLIEQLELHSPKVS---------------KGMRF 299
I SS G P + + L E+ + P+ S + F
Sbjct: 173 NHPHYLDAIKSSLIGQPTKLPPKLHITLQEEHQFSWPRTSTIPNGKNNHDINANKNSLGF 232
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPD-----YSTKFSPWLASGSISPRYIY 354
GGE++ + + +YF + YK+TRN LG + S+KFSPWLA+GS+S RYI
Sbjct: 233 YGGEASGISHLKQYF-STNAPSHYKDTRN-ALGCEKEEWQLSSKFSPWLANGSLSARYIV 290
Query: 355 EEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLF 414
+ + YE E ANDSTYW++FEL+WR+YF++ + KYG LFH G ++ S + F
Sbjct: 291 QMLSRYEEENGANDSTYWIMFELLWREYFQWYARKYGKKLFHRAGIQQRAPLASFYPQRF 350
Query: 415 ESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDY 474
+ W +G T +PL++A MK+L+ TGF+SNRGRQI S L+ ++G+DWR GA +FE L+DY
Sbjct: 351 QQWCNGSTPWPLVNACMKQLNQTGFLSNRGRQIVASVLIHELGLDWRCGAAYFEQQLIDY 410
Query: 475 DPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
D +N+GNW Y AGVG DPR R F+I KQ Q YD + Y+ W
Sbjct: 411 DVAANWGNWQYIAGVGADPRGGRQFNIDKQQQLYDPDETYIKRW 454
>gi|407700131|ref|YP_006824918.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Black
Sea 11']
gi|407249278|gb|AFT78463.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Black
Sea 11']
Length = 435
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 154/445 (34%), Positives = 228/445 (51%), Gaps = 34/445 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR+DLR+ D A+ + VY +D ++ FG G R FL++
Sbjct: 17 GLFWFRHDLRLHDQAAIATLCKKVAQITFVYILDDKNFSPN-EFGLSPMGQHRHTFLLQT 75
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETC----SEELNVERLVR 198
L DL++ L G LL+ GK E + +L ++ G + + C + +LN +
Sbjct: 76 LEDLKRQLAGLGHELLVLKGKTVECLANLLQA-GQYTHIGVSQHCGYDETAQLNAVKRFS 134
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC-- 256
+L V P L + + +PF +PDV++ FR+ +E
Sbjct: 135 NSLTVV-----------ETPTFGL------FDVSTLPFSVEDMPDVFSPFRRKVEKHSEP 177
Query: 257 --TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
+P +F PP S L ++L +P + F+GGE+AAL + Y
Sbjct: 178 LPVHDALASLPDAFTPPLD----ESFHLTLDIDLPAPSETS---FIGGETAALSHLGTYL 230
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
+ YKETRN + STKFS WLA+GS+S R + +V+ +E NDSTYW+
Sbjct: 231 FDWQSASSYKETRNALDSWQDSTKFSAWLANGSLSAREVVRQVQLFEATVEKNDSTYWIY 290
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
FEL+WR++F ++ KYG FH G + F W +G TGYP++DA M++L
Sbjct: 291 FELLWREFFHWLQYKYGAKWFHFSGIHGKTPSTQHCPETFRLWCEGKTGYPIVDACMRQL 350
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+MSNRGRQ+ S V ++ DWR GA WFE L+DYD SN+GNW Y AGVG+DPR
Sbjct: 351 AETGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYDVGSNWGNWLYLAGVGSDPR 410
Query: 495 EDRYFSIPKQAQNYDREGEYVAYWL 519
R F++ KQ + YD +G++ WL
Sbjct: 411 GHRQFNLIKQTEIYDPKGQFRKKWL 435
>gi|323496729|ref|ZP_08101774.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
gi|323318154|gb|EGA71120.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
Length = 417
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 153/441 (34%), Positives = 231/441 (52%), Gaps = 32/441 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHF-GFPKTGALRAQFLI 140
+ WF NDLRV DN L +A + ++ VY + P+ + F G + GA R +F+
Sbjct: 4 TGLYWFTNDLRVADNPLLTEAASEVDQLICVY-LYPQLTPFLAQFSGQQQLGAHRLRFVD 62
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ L DL +L +G L + H E+ +PSL + + +Y + +E +++
Sbjct: 63 QALQDLNHSLAKQGQRLAVIHQTAEQTLPSLIEQYNVTHLYVNRCAGWDETKQMHTLKQQ 122
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT--V 258
+ + S S + +++ +PF + LP +T FRK +E T +
Sbjct: 123 FPYLKVVSLSVN--------------SLFQESQLPFTLAQLPATFTRFRKCMEPVNTRDL 168
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
+PS+ PP Q P+V ++GGE+A YF D
Sbjct: 169 LPVSELPSTPLPPEER---------SQPHQADPRVD----YLGGETAGQQHCQWYF-SHD 214
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
YK+TRN ++G YSTKFSPWLA G +SP + ++ YE E AN+STYW++FEL+
Sbjct: 215 FASHYKQTRNGLVGKSYSTKFSPWLALGCLSPAQLVAYIQRYEHEIGANESTYWIVFELL 274
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YF + ++K+G LF G DQ F W G T + +++A MK+L TG
Sbjct: 275 WREYFYWYAMKHGALLFARSGITASTVTKPLDQSKFHRWTKGETDFAIVNACMKQLHATG 334
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
++SNRGRQ+A S L+ ++ +DWR GA +FET L+DYD SN+GNW Y AGVG DP R
Sbjct: 335 YLSNRGRQLAASCLIHELDMDWRYGAAYFETQLIDYDVASNWGNWQYLAGVGADPNPSRR 394
Query: 499 FSIPKQAQNYDREGEYVAYWL 519
F++ KQ Q YD +++ WL
Sbjct: 395 FNLDKQTQMYDPHRQFITRWL 415
>gi|351729487|ref|ZP_08947178.1| DNA photolyase, FAD-binding protein [Acidovorax radicis N35]
Length = 440
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 165/455 (36%), Positives = 236/455 (51%), Gaps = 42/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDS-SEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFRNDLR+ D AL A + +LPV C P T + GF + G R F+
Sbjct: 5 VFWFRNDLRLHDQPALQAALTGGATHLLPVVCQPPADEVTPW--GFARVGPHRQAFVAAA 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCS-EELNVERLVRKNL 201
L DL + G L + H P +P+LA++ GA V + E+ V L L
Sbjct: 63 LRDLGARMAALGNPLQVCHAAPATALPALARAVGAATVVCEDIAAPYEQAEVAALRAAGL 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE-------- 253
Q + +W +++ D+P+ + LP V+T FR+++E
Sbjct: 123 Q-----------------VHTVWHSSLLQPADMPWPVAELPAVFTPFRQAVERADIAPPA 165
Query: 254 -------AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS---KGMRFVGGE 303
+ + G P+ + G+ + L P+ S G E
Sbjct: 166 PLPPPVSLLPPPLVSSDVWEALGAMPAWAEQGAAA-TDNLAGRDPRSSFPYGTPACDGSE 224
Query: 304 SAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE 363
+ AL + +Y +K L YK TRN + G DYS+KFSPWLA+G++SPR I+ ++K++ER+
Sbjct: 225 TLALAHLVQYLARK-LAHSYKATRNGLTGLDYSSKFSPWLATGALSPRKIHADLKTFERD 283
Query: 364 RVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTG 423
AND YW+ FEL+WRDYFR + L+YG +L+ G L + + FE W G TG
Sbjct: 284 HGANDGIYWLWFELLWRDYFRLLHLQYGMALYRARGLSALPVA-PHNVQGFERWCQGRTG 342
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
PL+DA M+EL+ TG++SNR RQ+A S+L+ D+ DWR GA WFE+ L+DYD SN GNW
Sbjct: 343 EPLVDAAMRELASTGYLSNRLRQVAASYLIHDLHGDWRAGAAWFESQLVDYDVYSNQGNW 402
Query: 484 TYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
Y AG G DPR R F+ KQAQ +D +G Y W
Sbjct: 403 LYIAGRGTDPRGGRRFNPIKQAQEHDADGSYRRMW 437
>gi|374619112|ref|ZP_09691646.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[gamma proteobacterium HIMB55]
gi|374302339|gb|EHQ56523.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[gamma proteobacterium HIMB55]
Length = 434
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 155/436 (35%), Positives = 237/436 (54%), Gaps = 34/436 (7%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
WFR DLR+ DN AL + ++E +L +Y + P+ G G R +FL E L +
Sbjct: 6 WFRTDLRLNDNPAL-ASHAAAESLLCLYLM-PKPKPWCNLTGI---GDQRDRFLRESLIE 60
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
L+++L + G +LL+ G PE +IP L + +G + EE + L +
Sbjct: 61 LKRDLQDLGQDLLVLEGSPELVIPHLVERYGITEISVSDHPGWEEKQSLSYLAGKLPIPI 120
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
++ G +++ D+P + P V++ FR+ E K VRG P
Sbjct: 121 ---------------QIHRGNSLFTETDLPMELEDFPKVFSPFRRKAE-KLNVRGPRAAP 164
Query: 266 SSFGPPPSVVDWGSVPLIEQLELHSPKVSK---GMRFVGGESAALGRVNEYFWKKDLLKV 322
PPPS Q + P ++K G+ GG A L R+ ++ W + +
Sbjct: 165 ERLPPPPSA----------QFDEVPPSMNKPHPGLPIPGGRRAGLRRLKQFIWDDESITE 214
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YK+TRN + G D S+ FSPWLA+G++S R + + +E++RV+N+STYW+ FEL+WR++
Sbjct: 215 YKQTRNCLDGFDGSSTFSPWLANGTLSVREVAHCIFDFEKQRVSNESTYWLFFELLWREF 274
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F + + G S+F L G + + + + F W G T YP+++A M++L TG+MSN
Sbjct: 275 FYWRAEVDGKSMFMLAGKTGKPRRSTFEPRNFARWCAGDTNYPIVNALMRQLVATGWMSN 334
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
RGRQIA S L+ ++ DWR GA +FE L+DYD SNYGNW Y AGVG+DPR R+F++
Sbjct: 335 RGRQIAASCLINELDGDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGSDPRGGRHFNLG 394
Query: 503 KQAQNYDREGEYVAYW 518
KQ +D G +VA W
Sbjct: 395 KQTAEHDPSGIFVAKW 410
>gi|329909778|ref|ZP_08275122.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327546398|gb|EGF31408.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 439
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 158/421 (37%), Positives = 224/421 (53%), Gaps = 50/421 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
I WFRNDLR+LDN A L A S ++PV+C DP T H+GF + G R FL
Sbjct: 3 TVIYWFRNDLRLLDNPAFLLACRESSHIVPVFCHDPSDRALT-HWGFERVGDHRRAFLAA 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LADL L RG L+ G+P++++P+LA+S GA + + +E + + +R
Sbjct: 62 TLADLAAQLAARGSELIELAGRPQDVLPALARSIGATCIVGEAIAAPDEQDAVQALR--- 118
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
T + L+W +++ D +PF LPD++T FR ++E K V
Sbjct: 119 -------------TAGLNIDLVWQSSLLEPDALPFSTRRLPDMFTLFRTAVE-KADV--- 161
Query: 262 IRIPSSFGPPPSVVDW-------------------GSVPLIEQLELHSPKVSKGMRFVGG 302
PP D+ S P + ++ S + GG
Sbjct: 162 --------APPVPEDYPALIPPLPVLPSPLPHRWQDSPPALPDTDVRSSFPYQSAVCAGG 213
Query: 303 ESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYER 362
SA L +++Y +K L YK+TRN ++G DYS+KFSPWLA+G++S R I ++ +E
Sbjct: 214 TSAGLAHLHQYLERK-LAHTYKDTRNGLMGLDYSSKFSPWLATGALSARTINAAIEQFED 272
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLF-HLGGPRKLEYKWSQDQKLFESWRDGC 421
+ ANDSTYW+ FEL+WRDYFRF+ LKYG L+ H G + D F W G
Sbjct: 273 DFGANDSTYWLWFELLWRDYFRFLHLKYGRKLYRHYGLADAGMARPVHDAAQFARWSHGL 332
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG P++DA M+EL+ TG++SNR RQI S+L+ D+G DWR GA WFE+ L+DYD S G
Sbjct: 333 TGEPIVDAGMRELATTGYLSNRLRQIVASYLIHDLGGDWRAGAAWFESQLVDYDVYSQPG 392
Query: 482 N 482
Sbjct: 393 Q 393
>gi|90415708|ref|ZP_01223642.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC2207]
gi|90333031|gb|EAS48201.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2207]
Length = 447
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 159/441 (36%), Positives = 228/441 (51%), Gaps = 20/441 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V + WF +DLR+ DN AL+ A + ++ +YC D ++ + K R +FL E
Sbjct: 4 VGLFWFNHDLRMDDNAALVLAAAEVDKLICLYCADTTNTGPGWQQP-AKLSPRRREFLFE 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L DL L G L++R P E I L +Y+ S E + +RK
Sbjct: 63 SLQDLETQLSQYGQKLVVRIQPPLEAIAQLITVHNVSHLYSANHVGSYENRIWNTLRKRY 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA---KCTV 258
+ ++S H T++ +PF LP ++ FR+ IE +
Sbjct: 123 PMLEF-----NQSHTH---------TLFAPSQLPFTIDKLPASFSKFRRLIEKMDLDSVI 168
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLI-EQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+ P PP SV D PL + + F GG SA + YF K
Sbjct: 169 SAPLDAPEKLPPPASVADIAWQPLWRDHYSSNLDGDDSPALFKGGASAGEEHLKGYF-AK 227
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
DL YK+TRN + G DYSTKFSPWLA+G++SPR I ++++ YE ANDSTYW+ FEL
Sbjct: 228 DLASSYKQTRNGLDGMDYSTKFSPWLANGTLSPRRIVQQLQEYEARAGANDSTYWIFFEL 287
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR+YF++ ++ L+ G + S + F+ W G T Y +I+A MK+L+ T
Sbjct: 288 LWREYFQWYGHRHQQQLYAFTGIAQSAPTTSFYPERFKKWCAGNTPYAIINACMKQLNTT 347
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G++SNRGRQ+ S V ++G+DWR GA + E L+DYD SN+GNW Y AGVG DPR R
Sbjct: 348 GYLSNRGRQLVASCFVHELGLDWRHGAAYMEQQLVDYDVASNWGNWQYLAGVGADPRGHR 407
Query: 498 YFSIPKQAQNYDREGEYVAYW 518
F + KQAQ YD + ++V W
Sbjct: 408 RFDLKKQAQIYDPKNQFVQRW 428
>gi|119476543|ref|ZP_01616894.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
gi|119450407|gb|EAW31642.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
Length = 444
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 162/444 (36%), Positives = 227/444 (51%), Gaps = 29/444 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRA-QFLI 140
V + WF +DLR+ DN LL+A + ++ +YC D ++T P +LR +FL
Sbjct: 4 VGLFWFNHDLRIDDNATLLRAAAEVDTLICLYCADT--AKTGPGSRQPAELSLRRREFLF 61
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
E L DL L G L++R P E I L +Y S E + ++RK
Sbjct: 62 ESLQDLEAQLNRHGQKLVVRIQPPLEAIAQLITVHNVSHIYRSNHVGSYENTIWTILRKR 121
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ + + H T++ +PF LP ++ FR+ +E G
Sbjct: 122 YGMLTFT-----QCHTH---------TLFEPSQLPFAIDQLPSSFSKFRRVVEKMDINSG 167
Query: 261 C---IRIPSSFGPPPSVVDWGSVPLIEQLELH---SPKVSKGMRFVGGESAALGRVNEYF 314
+ P+S P V D L Q H + F GG SA + YF
Sbjct: 168 IAEPLPTPTSLPKPALVAD-----LAWQKRWHEYFTQSSDSPALFRGGASAGRRHLENYF 222
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
+ YK TRN + G DYSTKFSPWLA+GS+S R+I +++ YE ANDSTYW+L
Sbjct: 223 GSRRA-SDYKATRNGLDGMDYSTKFSPWLANGSLSTRHIVRQLQGYEERAGANDSTYWIL 281
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
FEL+WR+YF++ KY LF G S + F+ W G T Y +I+A M++L
Sbjct: 282 FELLWREYFQWYGHKYQQRLFTFSGIGNSTPITSFYPERFKKWCVGNTPYAIINACMRQL 341
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG++SNRGRQ+A S V ++G+DWR GA +FE L+DYD SN+GNW Y AGVG DPR
Sbjct: 342 NATGYLSNRGRQLAASCFVHELGLDWRHGATYFEQQLVDYDVASNWGNWQYLAGVGADPR 401
Query: 495 EDRYFSIPKQAQNYDREGEYVAYW 518
R+F + KQAQ YD + +V W
Sbjct: 402 GHRHFDLQKQAQIYDPDNHFVHRW 425
>gi|254516979|ref|ZP_05129037.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
gi|219674484|gb|EED30852.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
Length = 438
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 164/437 (37%), Positives = 234/437 (53%), Gaps = 30/437 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AI WFRNDLR+ D+ L+ A + E++L VY + PR G G R +F+ E
Sbjct: 7 AIYWFRNDLRLHDHPGLVAAAAADELLL-VY-LWPRQRAWCNTQGL---GEQRERFICES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +L K+L G LL+ G PE +IP L + +G +A++ + S E R++R+ L
Sbjct: 62 LTELAKDLQPLGQKLLVLQGSPELVIPDLVRDYGVNAIHTSQCAGSYETRALRVLRERLD 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT-VRGC 261
VL N +++ D+ L D ++ FR+ +E + T V
Sbjct: 122 IPVLEHGGN---------------SLFQEKDVAALCPELLDSFSPFRRKVEKQLTAVEPS 166
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+P P P V + S+P K G+ GG A R+ + F ++
Sbjct: 167 RNLPQL--PAPPAVQFHSIPPART------KPPLGLPLRGGSHAGQRRLKQ-FLDSGAIR 217
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN + + S+ SPWL+ GSIS R I + +E E+ AN+STYW+ FEL+WR+
Sbjct: 218 QYKETRNCLDPLEGSSTLSPWLSLGSISAREIAAAIAQHEAEQGANESTYWLYFELLWRE 277
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF + +L+ G +LF GG + + + + + F W G T +PL++A M +L TG+MS
Sbjct: 278 YFFWRALRDGVNLFRHGGRQGAVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMS 337
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQIA S L+ D GIDWR GA +FE L+DYD SNYGNW Y AGVG DPR R F+I
Sbjct: 338 NRGRQIAASCLIHDFGIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRGGRAFNI 397
Query: 502 PKQAQNYDREGEYVAYW 518
KQ YD +G + W
Sbjct: 398 DKQTAQYDPDGVFTHKW 414
>gi|414071199|ref|ZP_11407172.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas sp. Bsw20308]
gi|410806377|gb|EKS12370.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas sp. Bsw20308]
Length = 435
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 156/438 (35%), Positives = 232/438 (52%), Gaps = 31/438 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN A+ S + VL + V H ++ G + QFL++ L
Sbjct: 6 LYWLQNDLRLTDN-AIFSDLVSQQCVLDIVFVINPHWFKNNNYQQKPYGVHKQQFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L++ L++RG L + G+P ++ + E N++ +V
Sbjct: 65 YELQQELIDRGQTLHVLEGEPVSLLKARIN----------------EQNIDEVVYSEQFG 108
Query: 204 VVLSSQSNDKSTNHPQLKLIWGT---TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
V Q N ++ P K GT T+Y D+PFD S LP +T FRK +EA +
Sbjct: 109 VYEQRQINLLKSHCPSTKFT-GTQQDTLYKQSDLPFDLSELPKHFTPFRKKVEAATSPIS 167
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+P+ P P + PL +++ GG +A + +YF L
Sbjct: 168 LSTLPNGLLPQP-ITLCAKKPL--------ERIANNGVMHGGFKSAQTHLKQYF-SGLLP 217
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
YK TRNE+ G + +TKFS WLA G +S R +Y V++YE ++ N+STYW+ FEL+WR
Sbjct: 218 STYKITRNELDGFNNTTKFSTWLAFGCVSARQVYNAVEAYEHNQITNESTYWIKFELLWR 277
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
+YF++ +LK G SLF G ++ + + F +W +G T YPL++A M EL+ TG++
Sbjct: 278 EYFKWHALKAGKSLFSFKGQKQTKPLTTFMPSRFAAWCNGATPYPLVNAIMNELNATGYI 337
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNR RQIA S LV ++G+DWR GA +FE L+DYD +N+GNW Y AGVG DPR R+F+
Sbjct: 338 SNRARQIAASCLVNELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRGGRHFN 397
Query: 501 IPKQAQNYDREGEYVAYW 518
I KQ D Y W
Sbjct: 398 IEKQTLQLDPHAVYTNKW 415
>gi|260778085|ref|ZP_05886978.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
coralliilyticus ATCC BAA-450]
gi|260606098|gb|EEX32383.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
coralliilyticus ATCC BAA-450]
Length = 440
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/442 (35%), Positives = 230/442 (52%), Gaps = 37/442 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V + WF DLR+ DN L +A + +L VYC+ + G+ R FL +
Sbjct: 5 VGLYWFTCDLRIQDNPLLWQASCEVDSLLCVYCLPQMDRYLVRYSQEQSLGSERLAFLQQ 64
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKET-CSEELNVERLVRKN 200
+A L ++L N G LL+ +P +++ + +G Y + +E+ V+RL + +
Sbjct: 65 SVACLSQSLENMGQKLLVFDDRPLDVLNRFIQDYGVTHFYCDLFSGVNEQSVVDRLSQLH 124
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ N T++ +PF LP +T FRK +E
Sbjct: 125 SDLTCIQEPVN---------------TLFSQRLLPFTLGELPSTFTQFRKQVE-----HL 164
Query: 261 CIRIPSSFG----PPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
I + SS PP V+ L+ +VS + F GGE+ L + YF
Sbjct: 165 PIGVDSSLSALPEPPAQVIS----------TLNMEEVSCQL-FAGGETLGLAHCSGYF-A 212
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
L YK+TRNE+ G D+STKFSPWLA G +SP+ I+ ++ YE+ ANDSTYW+ FE
Sbjct: 213 TSLASHYKQTRNELDGFDFSTKFSPWLAVGCLSPKRIFVLLQEYEQREGANDSTYWIFFE 272
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L+WR+YF + +G LF G + S F+ W+ G T YP+++A M +L
Sbjct: 273 LLWREYFHWYGKLWGRRLFKFSGLKDATPLTSFYSYRFQQWKHGETQYPIVNACMNQLKA 332
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG+MSNRGRQ+ S L+ ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DPR+
Sbjct: 333 TGYMSNRGRQLVASCLIHELGLDWRYGAAYFETQLVDYDVASNWGNWQYLAGVGADPRDS 392
Query: 497 RYFSIPKQAQNYDREGEYVAYW 518
R F++ KQ + YD + ++ W
Sbjct: 393 RRFNLAKQTEMYDPDKVFIERW 414
>gi|392535677|ref|ZP_10282814.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas arctica A
37-1-2]
Length = 439
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 153/437 (35%), Positives = 235/437 (53%), Gaps = 25/437 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN +L + + L + V H ++ G + QFL++ L
Sbjct: 6 LYWLQNDLRIDDN-PILSELATEQCALDIVFVINTHWFKNNNYQQKPYGVHKQQFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPS-LAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+L++ L+ RG L + G+P ++ +A+ V ++ E+ + RL + +
Sbjct: 65 FELQQELIERGQTLHVLEGEPVSVLKQRIAEQHIDEVVCSEHVGTYEQRQLARL-KAHCP 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V+ + D T++ D+PFD LP +T FRK +EA
Sbjct: 124 HVIFKTTQQD--------------TLFQQSDLPFDLDELPKSFTPFRKKVEAMNIPITTS 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL-K 321
+P P P + + P+ +L H+ + M GG +A + +YF DLL
Sbjct: 170 TLPKGLLPQP-ITLCAANPI--ELNEHTNYNNAVMN--GGLKSAQTHLKQYF--SDLLPS 222
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK TRNE G + +TKFS WLA G +S R +Y+ V++YE ++ N+STYW+ FEL+WR+
Sbjct: 223 TYKITRNEFDGFNNTTKFSTWLAFGCVSARQVYKAVEAYEHNQITNESTYWIKFELLWRE 282
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF++ +LK G SLF G ++ + + F +W +G T YPL++A M EL+ TG++S
Sbjct: 283 YFKWHALKAGKSLFSFKGQKQTKPLTTFMPNRFAAWCNGSTPYPLVNAIMNELNATGYIS 342
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NR RQIA S LV ++G+DWR GA +FE L+DYD +N+GNW Y AGVG DPR R+F+I
Sbjct: 343 NRARQIAASCLVNELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRGGRHFNI 402
Query: 502 PKQAQNYDREGEYVAYW 518
KQ +D Y W
Sbjct: 403 EKQTLQFDPHAVYTNKW 419
>gi|451971961|ref|ZP_21925175.1| Deoxyribodipyrimidine photolyase [Vibrio alginolyticus E0666]
gi|451932148|gb|EMD79828.1| Deoxyribodipyrimidine photolyase [Vibrio alginolyticus E0666]
Length = 444
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 229/442 (51%), Gaps = 30/442 (6%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTY--HFGFPKT-GALRA 136
K + + WF NDLR+ DN L+ A + ++ +YC R S T Y HF + G +
Sbjct: 3 KKIGLYWFTNDLRLHDNPLLVDACAEMDELICLYC---RPSVTPYLQHFAQETSLGRAKL 59
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
QFL L +L ++L G L P + + FG +YA S+E
Sbjct: 60 QFLEASLNELNQSLAKLGQRLWTVELTPYQALKYAISHFGITHIYADAFAGSDE------ 113
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
++ L++ + K T H +K T+ + +PF+ LP +T FRK + A
Sbjct: 114 -QQALERAI-------KGTPHVNIKQQAIRTLLCEEQLPFELRQLPATFTKFRKQV-AGL 164
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
+ P PS ++ + + F GGE + L YF
Sbjct: 165 DLSQPYESVHVLPPVPSGTNFPTAT--------TYYFDTKPAFDGGELSGLEHCRRYF-A 215
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
L YK+TRN + G +YSTKFSPWLA G +SP IY +K YER+ ANDSTYW+ FE
Sbjct: 216 SSLASEYKQTRNGLDGVEYSTKFSPWLAHGCVSPTIIYAMLKQYERKNGANDSTYWIYFE 275
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L+WR+YF + + KY LF GG S + F+ W+ G T +P+++A M +L+
Sbjct: 276 LLWREYFYWYARKYQQKLFRFGGIANQPPLTSFYAQRFKQWKKGETPFPIVNACMHQLNK 335
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DPR
Sbjct: 336 TGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRGS 395
Query: 497 RYFSIPKQAQNYDREGEYVAYW 518
R F++ KQ Q YD + ++ W
Sbjct: 396 RQFNLEKQTQTYDPDFSFIDKW 417
>gi|28900058|ref|NP_799713.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|308094879|ref|ZP_05892988.2| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
gi|308095330|ref|ZP_05905084.2| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
gi|308125427|ref|ZP_05775230.2| cryptochrome dash [Vibrio parahaemolyticus K5030]
gi|81839701|sp|Q87JP5.1|CRYD_VIBPA RecName: Full=Cryptochrome DASH
gi|28808341|dbj|BAC61546.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|308086793|gb|EFO36488.1| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
gi|308091994|gb|EFO41689.1| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
gi|308115600|gb|EFO53140.1| cryptochrome dash [Vibrio parahaemolyticus K5030]
Length = 445
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 157/440 (35%), Positives = 225/440 (51%), Gaps = 26/440 (5%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQF 138
K + + WF DLR+ DN L+ A + ++ +YC P + +HF T G R +F
Sbjct: 3 KKIGLYWFTFDLRLHDNSLLVDASSFLDELVCLYC-RPSVTPFLHHFAQEVTLGRARQKF 61
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
+ L +L L G L P + + + +Y+ S+E ++ ++
Sbjct: 62 IDASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLSVTHLYSDAMAGSDEQSILHKLQ 121
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+V+ S +++ +PF LP+ +T FRK +E +
Sbjct: 122 DEYPHLVIVQHSV--------------RSLFDESKLPFTLPDLPETFTQFRKCVEG-IDI 166
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
I PS P P +P L S + F GGE + L YF+
Sbjct: 167 AHPIDAPSRLPPMPKG---AQLP-----TLSSFYFDESALFSGGEWSGLAHCRRYFFSG- 217
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L YKETRN + G YSTKFSPWLA G +SPR I+ +K YE+ + ANDSTYW+ FEL+
Sbjct: 218 LASSYKETRNGLDGMAYSTKFSPWLALGCVSPRMIHAMLKQYEQTQGANDSTYWIYFELL 277
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YF + + Y LF GG R S F+ W++G T YP+++A M +L+ TG
Sbjct: 278 WREYFYWYARCYQQRLFRFGGIRNQPPLTSFYAHRFQQWKNGTTPYPIVNACMHQLNHTG 337
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DPR R
Sbjct: 338 YMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRGSRQ 397
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F++ KQ Q YD E++ W
Sbjct: 398 FNLEKQTQMYDPNHEFIERW 417
>gi|332534683|ref|ZP_08410514.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas haloplanktis ANT/505]
gi|332035895|gb|EGI72377.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas haloplanktis ANT/505]
Length = 435
Score = 258 bits (658), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 150/436 (34%), Positives = 234/436 (53%), Gaps = 27/436 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN A+ S + L + V H ++ G + QFL++ L
Sbjct: 6 LYWLQNDLRLTDN-AIFSDLASQQCALDIVFVINPHWFKNNNYQQKSYGVHKQQFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPS-LAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+L++ L+ RG L + G+P ++ + + + VY+++ E+ + L++ +
Sbjct: 65 YELQQALIERGQTLHVLEGEPVSVLKARINEQNIDEVVYSEQFGLYEQRQI-NLLKAHCP 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V + D T++ D+PFD S LP +T FRK +EA +
Sbjct: 124 NVRFTGAQQD--------------TLFKQSDLPFDLSELPKHFTPFRKKVEAATSPISLS 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
+P+ P P + PL +++ GG +A + +YF L
Sbjct: 170 TLPNGLLPQP-ITLCAKKPL--------ERIANNGVMHGGFKSAQTHLEQYF-SGLLPST 219
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YK TRNE+ G + +TKFS WLA G +S R +Y+ V++YE ++ N+STYW+ FEL+WR+Y
Sbjct: 220 YKITRNELDGFNNTTKFSTWLAFGCVSARQVYKAVEAYEHNQITNESTYWIKFELLWREY 279
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F++ +LK G SLF G ++ + + F +W +G T YPL++A M EL+ TG++SN
Sbjct: 280 FKWHALKAGKSLFSFKGQKQTKPLTTFMPNRFAAWCNGSTPYPLVNAIMNELNATGYISN 339
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
R RQIA S LV ++G+DWR GA +FE L+DYD +N+GNW Y AGVG DPR R+F+I
Sbjct: 340 RSRQIAASCLVNELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRGGRHFNIE 399
Query: 503 KQAQNYDREGEYVAYW 518
KQ +D Y W
Sbjct: 400 KQTLQFDPHAVYTNKW 415
>gi|441503036|ref|ZP_20985043.1| Cryptochrome [Photobacterium sp. AK15]
gi|441429252|gb|ELR66707.1| Cryptochrome [Photobacterium sp. AK15]
Length = 435
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/438 (34%), Positives = 228/438 (52%), Gaps = 26/438 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ F+NDLR+ DN AL A ++ +YC+ P+H + + G R QFL++
Sbjct: 3 TGLFLFQNDLRLHDNPALALAAKEVNELICIYCL-PQHKANMLPYSVTQLGTQRQQFLLQ 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L DL + L +L+I P I+P L + A+Y + E ++++K
Sbjct: 62 SLTDLNRQLNQCRQHLVILLDHPLNILPELITQYNVSALYRSQHAGFYENQSWQILKKRY 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ Q + T++ ++PFD LP ++ FRK +E +
Sbjct: 122 PYL--------------QFTTVASHTLFDQPELPFDIEDLPPTFSKFRKQVENHPIQKPM 167
Query: 262 IRIPSSFGPPPSVVDWGSV-PLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
R+ S PP ++ + + PL+ HS + F GGE A L + YF +
Sbjct: 168 RRLTSLPSPPNTLPKFDVISPLLTH---HSSE------FTGGEEAGLSHLTAYFASRHP- 217
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
YK TRN + G + STK SPWLA G +SPR + E ++ Y ++ N ST W+ FEL+WR
Sbjct: 218 SHYKLTRNALDGWENSTKLSPWLALGCLSPRTLIERLEIYHQQVEQNSSTEWIKFELLWR 277
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
+YF++ S + LF G + S + F+ W G T YP+++A M +L+ TGFM
Sbjct: 278 EYFQWYSHNHQQKLFRFKGIKNKSPNTSFYPERFKRWCHGNTPYPIVNACMNQLNQTGFM 337
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ+ S LV ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DP+E R+F+
Sbjct: 338 SNRGRQLVASCLVNELSLDWRYGAAYFEQQLIDYDVASNWGNWQYLAGVGADPKEHRHFN 397
Query: 501 IPKQAQNYDREGEYVAYW 518
+ KQ + YD E ++ W
Sbjct: 398 LLKQTELYDPEQSFIRKW 415
>gi|126665353|ref|ZP_01736335.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
gi|126629981|gb|EBA00597.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
Length = 441
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 158/442 (35%), Positives = 234/442 (52%), Gaps = 30/442 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WF DLR+ DN ALL A S+M+L VY V+PR + G R +FL +
Sbjct: 3 TLYWFTRDLRLHDNAALLAA-SKSDMLLCVYVVEPRWFKPG-PLQCKTMGHHRWRFLWQS 60
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L ++L G L I G PE +IP+LA + ++ + E + ++ L
Sbjct: 61 LIGLERSLRALGQRLHIAWGDPETVIPALAHGHVISRIVRSRQPGTREAVQWQTLQDKLP 120
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC- 261
++ T + L L + +P LP ++ FRK IE K RG
Sbjct: 121 KIAF--------TQYETLGL------FTESLLPMPLQDLPTTFSQFRKLIEKKGD-RGPS 165
Query: 262 -IRIPS--SFGPPPSVVD--WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
+RIP+ P P + D G P I++ ++ F GGE A L R+ ++
Sbjct: 166 RLRIPTLKMLPPAPGLPDDNRGECPAIQE-------PTQPQAFRGGEQAGLARLQDFLAG 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
+ YKETRN + + S+KFSPWLA G +S R + + + YE++ +N+STYW+ FE
Sbjct: 219 THAIDTYKETRNALDDWNSSSKFSPWLAHGCLSAREVADSISLYEQQHTSNESTYWLWFE 278
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
++WR+YF + +L++G+ LF G + + F++W +G T YPL++A M +L
Sbjct: 279 VLWREYFYWYALRHGSELFRRDGVQGKRQSVTFYGHRFKAWCEGNTSYPLVNAAMNQLRE 338
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG++SNR RQ+ S + ++ +DWR GA WFE L+DYD SNYGNW Y AGVG DPR
Sbjct: 339 TGYISNRSRQLVASCFINELELDWRYGAAWFEQQLIDYDVASNYGNWQYLAGVGADPRGL 398
Query: 497 RYFSIPKQAQNYDREGEYVAYW 518
R F++ KQAQ YD G +V W
Sbjct: 399 RRFNLDKQAQQYDPNGTFVERW 420
>gi|343496946|ref|ZP_08735031.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
gi|342820399|gb|EGU55222.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
Length = 444
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 157/436 (36%), Positives = 234/436 (53%), Gaps = 23/436 (5%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+ WF NDLR+ DN AL++A + + +YC+DPR + + P G R FL++
Sbjct: 4 AVYWFTNDLRIEDNPALIRALQTENTLHCLYCLDPRSLKPGRYSTKP-IGEKRLSFLLQS 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA+L + L G +L + P+++ L + + V+ E V +
Sbjct: 63 LAELDETLRAFGQHLHVYLENPDDLFCRLYQQYSVRRVHHSVNAGLYEKAFFSRVSQRSD 122
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V+ +S S+ T+++ + +PFD LP+ ++ FRK +E +
Sbjct: 123 VVLNASHSH---------------TLFNPESLPFDLCDLPETFSKFRKLVEKEKRRLVAP 167
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
+P + P P + S QLE ++ + F GG +AL ++ YF D
Sbjct: 168 MLPPTSWPEPLCAN--SSEWKTQLETNTGSEA----FSGGCKSALRHLDSYF-STDNASR 220
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YKETRN + STKFSPWLA+GS+SP + +K YE ANDSTYW+ FEL+WR+Y
Sbjct: 221 YKETRNALDDWSSSTKFSPWLANGSLSPNLVLWLLKQYESTSGANDSTYWIEFELLWREY 280
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F++ + K G LF G R + + F+ W G T YP+++A MK+L+ TG+MSN
Sbjct: 281 FQWYAHKQGAHLFRFEGIRGQKPLTTFYPSRFKQWCQGETPYPIVNACMKQLNDTGYMSN 340
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
RGRQ+ S LV ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DPR +R F++
Sbjct: 341 RGRQLVASCLVHELQLDWRYGAAYFEQQLVDYDVASNWGNWQYLAGVGADPRGNRQFNLE 400
Query: 503 KQAQNYDREGEYVAYW 518
KQ YD E++ W
Sbjct: 401 KQTLMYDPNREFIHRW 416
>gi|359456434|ref|ZP_09245595.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20495]
gi|358046549|dbj|GAA81844.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20495]
Length = 436
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/436 (34%), Positives = 235/436 (53%), Gaps = 26/436 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN L + + V+ ++P + + P G + QFL++ L
Sbjct: 6 LYWLQNDLRIDDNPILSELATGQCALDIVFVINPHWFKNNNYQQKP-YGVHKHQFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH-AVYAQKETCSEELNVERLVRKNLQ 202
+L++ L+ RG L + G+P ++ + H VY+++ E+ + L++ + Q
Sbjct: 65 YELQQTLIERGQTLHVLEGEPVSLLKARINEQNIHEVVYSEQFGLYEQRQI-NLLKAHCQ 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + D T++ D+PFD + LP +T FRK EA
Sbjct: 124 NIEFTGVLQD--------------TLFKQSDLPFDLNELPKSFTPFRKKSEAANIPITLS 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
+P P P + + IE + ++ + GG +A + +YF L
Sbjct: 170 MLPEGLLPQP--ITLCAAKPIELTDDNNAIMH------GGFKSAQAHLAQYF-SGLLPST 220
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YK TRNE+ G + +TKFS WLA G +S R +Y+ V+ YE + +AN+STYW+ FEL+WR+Y
Sbjct: 221 YKTTRNELDGFNNTTKFSTWLAFGCVSARQVYKAVEEYEHKHIANESTYWIKFELLWREY 280
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F++ +L GNSLF G ++ + + F +W +G T YPL++A M EL+ TG++SN
Sbjct: 281 FKWHALNAGNSLFSFTGQKQTKPLTTFMPNRFAAWCNGSTPYPLVNAIMNELNATGYISN 340
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
R RQ+A S LV ++G+DWR GA +FE L+DYD +N+GNW Y AGVG DPR R+F+I
Sbjct: 341 RARQVAASCLVNELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRGGRHFNIQ 400
Query: 503 KQAQNYDREGEYVAYW 518
KQ +D G Y W
Sbjct: 401 KQTAQFDPHGIYTNKW 416
>gi|392555103|ref|ZP_10302240.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas undina NCIMB
2128]
Length = 436
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 156/442 (35%), Positives = 228/442 (51%), Gaps = 38/442 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDP------RHSQTTYHFGFPKTGALRAQ 137
+ W +NDLR+ DN L + V+ ++P + Q TY G + +
Sbjct: 6 LYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNNYQQKTY-------GVHKQR 58
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA-HAVYAQKETCSEELNVERL 196
FL++ L +L+++++ G L I G P E++ VY+Q+ E+ + L
Sbjct: 59 FLMQSLYELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQIGVYEQRQISAL 118
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
+ VV S D T+Y +PF+ ++LP +T FRK IEA
Sbjct: 119 -KSKCTTVVFKSVMQD--------------TLYQQQQLPFELANLPTGFTPFRKKIEAAE 163
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
++ PPP + L + + P + + +GG AAL +YF
Sbjct: 164 ISLATHAFSAARLPPPII-------LCAKQPIEKP-ATGNTQLLGGHQAALEHCQQYF-S 214
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
L YK TRNE+ G D STKFS WLA G IS + ++ V +YE + AN+STYW+ FE
Sbjct: 215 SALPSSYKITRNELDGFDNSTKFSSWLAFGCISAKQVFCAVDAYEAQYGANESTYWIKFE 274
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L+WR+YF++ ++ + LF G ++ + F W G T YPL++A MKEL+
Sbjct: 275 LLWREYFKWHAINVKHQLFTFKGKKQSSPLTTFSPNRFAKWCQGSTPYPLVNAIMKELNA 334
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TGF+SNR RQI S LV ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DPR
Sbjct: 335 TGFISNRSRQIVASCLVNELQLDWRYGAAYFEQQLIDYDVASNWGNWQYIAGVGVDPRGG 394
Query: 497 RYFSIPKQAQNYDREGEYVAYW 518
R+F++ KQ Q YD G Y+A W
Sbjct: 395 RHFNLQKQTQQYDPHGVYIAKW 416
>gi|359436511|ref|ZP_09226610.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20311]
gi|358028804|dbj|GAA62859.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20311]
Length = 436
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 155/436 (35%), Positives = 228/436 (52%), Gaps = 26/436 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN L + V+ ++P ++ + P G + +FL++ L
Sbjct: 6 LYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNNYQQKP-YGVHKQRFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA-HAVYAQKETCSEELNVERLVRKNLQ 202
+L+++++ G L I G P E++ VY+Q+ E+ + L +
Sbjct: 65 YELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQIGVYEQRQISAL-KSKCT 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
VV S D T+Y +PF+ ++LP +T FRK IEA
Sbjct: 124 TVVFKSVMQD--------------TLYQQQQLPFELANLPTGFTPFRKKIEAAEISLATH 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
++ PPP + L + + P + + +GG AAL +YF L
Sbjct: 170 TFSAARLPPPII-------LCAKQPIEKP-ATGNTQLLGGHQAALEHCQQYF-SSALPSS 220
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YK TRNE+ G D STKFS WLA G IS + I+ V +YE + AN+STYW+ FEL+WR+Y
Sbjct: 221 YKITRNELDGFDNSTKFSSWLAFGCISAKQIFCAVDAYETQYGANESTYWIKFELLWREY 280
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F++ ++ + LF G ++ + F W G T YPL++A MKEL+ TGF+SN
Sbjct: 281 FKWHAINVKHQLFTFKGKKQSSPLTTFSPNRFAKWCQGSTPYPLVNAIMKELNATGFISN 340
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
R RQI S LV ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DPR R+F++
Sbjct: 341 RSRQIVASCLVNELQLDWRYGAAYFEQQLIDYDVASNWGNWQYIAGVGVDPRGGRHFNLQ 400
Query: 503 KQAQNYDREGEYVAYW 518
KQ Q YD G Y+A W
Sbjct: 401 KQTQQYDPHGVYIAKW 416
>gi|359435159|ref|ZP_09225386.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20652]
gi|357918200|dbj|GAA61635.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20652]
Length = 439
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/436 (34%), Positives = 235/436 (53%), Gaps = 23/436 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN L + + V+ ++P + + P G + QFL++ L
Sbjct: 6 LYWLQNDLRIDDNPILSELATEQCALDIVFVINPHWFKNNNYQQKP-YGVHKQQFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPS-LAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L++ L+ RG L + G+P ++ +A+ V ++ E+ + RL + +
Sbjct: 65 YALQQALIERGQTLHVLEGEPVSVLKQRIAEQHIDEVVCSELVGTYEQRQLARL-KAHCP 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
V+ + D T++ D+PFD + LP +T FRK +EA
Sbjct: 124 HVIFKTTQQD--------------TLFKQSDLPFDLNELPKSFTPFRKKVEAVNIPITIS 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
+P P P + + P+ +L H+ + M GG +A + +YF L
Sbjct: 170 TLPKGLLPQP-ITLCAANPI--ELNEHTNYNNAIMH--GGFKSAQTHLKQYF-SGLLPST 223
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YK TRNE+ G + +TKFS WLA G +S R +Y+ V+ YE ++ N+STYW+ FEL+WR+Y
Sbjct: 224 YKTTRNELDGFNNTTKFSTWLAFGCVSARQVYKAVEQYEHSQITNESTYWIKFELLWREY 283
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F++ +LK GNSLF G ++ + + F +W +G T YPL++A M EL+ TG++SN
Sbjct: 284 FKWHALKAGNSLFSFKGQKQTKPLTTFMPNRFAAWCNGSTPYPLVNAIMNELNATGYISN 343
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
R RQ+A S LV ++G+DWR GA +FE L+DYD +N+GNW Y AGVG DPR R+F+I
Sbjct: 344 RARQVAASCLVNELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRGGRHFNIE 403
Query: 503 KQAQNYDREGEYVAYW 518
KQ +D Y W
Sbjct: 404 KQTLQFDPHAVYTNKW 419
>gi|359447492|ref|ZP_09237086.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20439]
gi|358038590|dbj|GAA73335.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20439]
Length = 436
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 154/436 (35%), Positives = 228/436 (52%), Gaps = 26/436 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN L + V+ ++P ++ + P G + +FL++ L
Sbjct: 6 LYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNSYQQKP-YGVHKQRFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA-HAVYAQKETCSEELNVERLVRKNLQ 202
+L+++++ G L I G P E++ VY+Q+ E+ + L +
Sbjct: 65 YELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQIGVYEQRQISAL-KSKCT 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
VV S D T+Y +PF+ ++LP +T FRK IEA
Sbjct: 124 TVVFKSVMQD--------------TLYQQQQLPFELANLPTGFTPFRKKIEAAEISLATH 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
++ PPP + L + + P + + +GG AAL +YF L
Sbjct: 170 TFSAARLPPPII-------LCAKQPIEKP-ATGNTQLLGGHQAALEHCQQYF-SSALPSS 220
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YK TRNE+ G D STKFS WLA G IS + ++ V +YE + AN+STYW+ FEL+WR+Y
Sbjct: 221 YKITRNELDGFDNSTKFSSWLAFGCISAKQVFCAVDAYEAQYGANESTYWIKFELLWREY 280
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F++ ++ + LF G ++ + F W G T YPL++A MKEL+ TGF+SN
Sbjct: 281 FKWHAINVKHQLFTFKGKKQSSPLTTFSPNRFAKWCQGSTPYPLVNAIMKELNATGFISN 340
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
R RQI S LV ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DPR R+F++
Sbjct: 341 RSRQIVASCLVNELQLDWRYGAAYFEQQLIDYDVASNWGNWQYIAGVGVDPRGGRHFNLQ 400
Query: 503 KQAQNYDREGEYVAYW 518
KQ Q YD G Y+A W
Sbjct: 401 KQTQQYDPHGVYIAKW 416
>gi|343510119|ref|ZP_08747374.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
gi|342803146|gb|EGU38524.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
Length = 446
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 151/440 (34%), Positives = 235/440 (53%), Gaps = 30/440 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP-KTGALRAQFLI 140
+ + WF DLR+ +N L +A + ++ +YCV P+ ++ H+ + A + QFL
Sbjct: 5 IGLYWFTQDLRIENNPLLQRAAQEVDTLICLYCV-PKMTRFITHYAHEHRFSAAKIQFLS 63
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ L+K+L G L++ P + + +Y ++E V R +++
Sbjct: 64 QSAKCLQKSLTALGQQLVVTTSTPYAKLQRIIHDHSVDHLYCDAFVGTDEKQVLRQLKEQ 123
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
++++ Q + +S ++ D+PF+ ++LP +T FRK +E +
Sbjct: 124 FPSLIVT-QDHVRS-------------LFRKSDLPFELNALPSTFTQFRKQVEE---LDK 166
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKV--SKGMRFVGGESAALGRVNEYFWKKD 318
R ++ PP PL Q E PK+ ++ F GGE A L YF
Sbjct: 167 PARNTTTTRLPP--------PLQIQFEETWPKLPPTQPALFEGGELAGLTHCQRYF-SSP 217
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L + YK+TRNE+ G DYSTK SPWLA G +SP I + +E + N+STYW+ FEL+
Sbjct: 218 LPQHYKQTRNELDGMDYSTKLSPWLAIGCLSPCTILSMLAEHEHQFGRNESTYWISFELL 277
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YF + ++K+G LF G + S + F W+ G T +P+++A M +L+ TG
Sbjct: 278 WREYFYWSAMKHGARLFRFSGNKPSAPLTSFYPQRFLQWKRGETPFPIVNACMHQLNQTG 337
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
FMSNRGRQI S L+ ++ +DWR GA +FET L+DYD SN+GNW Y AGVG DPR R
Sbjct: 338 FMSNRGRQIVASCLIHELQLDWRYGAAYFETQLVDYDVASNWGNWQYLAGVGADPRGSRR 397
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F + KQ Q+YD + ++ W
Sbjct: 398 FDLNKQTQHYDADLSFIRRW 417
>gi|312881360|ref|ZP_07741157.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
gi|309371000|gb|EFP98455.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
Length = 431
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 159/448 (35%), Positives = 244/448 (54%), Gaps = 39/448 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP---KTGALRA 136
K + + WF NDLR+ DN L KA S+ V + C+ R T + + + GA R
Sbjct: 3 KRIGLYWFTNDLRLTDNPLLHKA---SKEVDQLICLYTRPQLTCFLQKYSCQERWGAART 59
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAV---YAQKETCSEELNV 193
FL + L +L ++L + G L + E I +L+ H V Y + +E +V
Sbjct: 60 LFLNQSLRNLSESLDDVGQQLTVVD---EPTIGTLSDLVTKHEVSDLYCNQFAGFDEQSV 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ +N +++ + S+NH +Y + +PF + LP+ +T FRK +E
Sbjct: 117 IEQLGRNFSDLII----HQNSSNH----------LYSEEQLPFALNGLPNTFTKFRKLVE 162
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++R + +P P SV +P +Q++ + F+GGE + Y
Sbjct: 163 G-ISLRELVEVPRLPPPIKSVGRGVQIPAEKQMQ--------SVEFLGGEVFGMDHCLRY 213
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
F K + YK TRN + GP YSTKFSPWLA G ISPR + E ++ YE++ AN+STYW+
Sbjct: 214 FSTKRASE-YKLTRNGLDGPSYSTKFSPWLAHGCISPRQVLEVLRDYEQKNGANESTYWI 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPR---KLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
FEL+WR++F + + ++G +LF G + K K + F +W +G T +P+++A
Sbjct: 273 FFELLWREFFYWYARRWGKNLFLYSGIKTCSKPAAKGTSVSTAFSNWIEGKTDFPIVNAC 332
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M +L TGFMSNRGRQ+ S L+ ++GIDWR GA +FET L+DYD SN+GNW Y AGVG
Sbjct: 333 MNQLRKTGFMSNRGRQLVASCLIHELGIDWRCGAAYFETQLIDYDVGSNWGNWQYLAGVG 392
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYW 518
D + R F++ KQ + YD + E++ W
Sbjct: 393 ADTQPARQFNLGKQTEIYDPKREFIMQW 420
>gi|359441768|ref|ZP_09231654.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20429]
gi|358036270|dbj|GAA67903.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20429]
Length = 439
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 151/436 (34%), Positives = 233/436 (53%), Gaps = 23/436 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN L + + V+ ++P + + P G + QFL++ L
Sbjct: 6 LYWLQNDLRIDDNPILSELATEQCALDIVFVINPHWFKNNNYQQKP-YGVHKQQFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPS-LAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+L++ L+ RG L + G+P ++ +A+ V ++ E+ + RL L
Sbjct: 65 FELQQALIERGQTLHVLEGEPVSVLKQRIAEQHIDEVVCSEHVGTYEQRQLARLKAHCLH 124
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ ++Q + T++ D+PFD LP +T F+K +EA
Sbjct: 125 VIFKTTQQD---------------TLFQQSDLPFDLDELPKSFTPFKKKVEAINIPITIS 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
+P P P + + P+ +L H+ + M GG +A + +YF L
Sbjct: 170 ALPKGLLPQP-ITLCAANPI--ELNEHTNYNNAVMH--GGLKSAQTHLAQYF-SGLLPST 223
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YK TRNE+ G + +TKFS WLA G +S R Y V+ YE + +AN+STYW+ FEL+WR+Y
Sbjct: 224 YKTTRNELDGFNNTTKFSTWLAFGCVSARQAYNVVEEYEHKHIANESTYWIKFELLWREY 283
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F++ +LK G SLF G ++ + + F +W +G T YPL++A M EL+ TG++SN
Sbjct: 284 FKWHALKAGKSLFSFKGQKQTKPLTTFMPNRFAAWCNGSTPYPLVNAIMNELNATGYISN 343
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
R RQIA S LV ++G+DWR GA +FE L+DYD +N+GNW Y AGVG DPR R+F+I
Sbjct: 344 RARQIAASCLVNELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRGGRHFNIE 403
Query: 503 KQAQNYDREGEYVAYW 518
KQ +D Y W
Sbjct: 404 KQTLQFDPHAVYTNKW 419
>gi|254784878|ref|YP_003072306.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
gi|237684101|gb|ACR11365.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
Length = 447
Score = 254 bits (649), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 155/441 (35%), Positives = 233/441 (52%), Gaps = 29/441 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V + WF NDLR+ DN AL A S E ++ VY +DPR +G G +R +FL E
Sbjct: 10 VGVFWFSNDLRITDNAALNYAAQSCETLICVYILDPRLYAPN-RYGLRSMGPMRDRFLQE 68
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LA L +L G LL+ P + + L + V ++ E ++++
Sbjct: 69 SLAQLSVDLNAVGQTLLVLRESPLQAMAQLIGKYDPGLVVRSRQAGFYEYKQWAMLQRRY 128
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ + K I T+++ +D+ PF + LP ++ FRK +E +R
Sbjct: 129 RLI--------------SFKDIATHTLFNDEDLLPFPLTDLPKTFSQFRKKVEPLADIRN 174
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ + PPP + E L+ S + F GG A + ++ YF
Sbjct: 175 LLPV-CDLPPPPRGLKRDHTFRRELLKHQSRSI-----FKGGAEAGIQQLQGYF-HTTAP 227
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
YK RN + G STK SPWLA+G +S + + YE + AN+STYW+ FEL+WR
Sbjct: 228 SEYKTVRNALDGWGNSTKLSPWLANGCLSVNQVLLALGEYEAQYSANESTYWISFELLWR 287
Query: 381 DYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+YF++ + +G LF + G +KL +SQ F W +G T +PL++A MK+L++T
Sbjct: 288 EYFQWSAYLHGARLFARDGINGSKKLNTFYSQR---FMQWCEGSTPFPLVNALMKQLNVT 344
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQI S LV ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DPR R
Sbjct: 345 GYMSNRGRQITASCLVNELALDWRYGAAYFEQQLIDYDVASNWGNWQYIAGVGADPRGGR 404
Query: 498 YFSIPKQAQNYDREGEYVAYW 518
+F++ KQ + +D EG+++A W
Sbjct: 405 HFNLDKQREIFDPEGDFIAKW 425
>gi|152994374|ref|YP_001339209.1| cryptochrome DASH [Marinomonas sp. MWYL1]
gi|150835298|gb|ABR69274.1| Cryptochrome DASH [Marinomonas sp. MWYL1]
Length = 441
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 153/441 (34%), Positives = 225/441 (51%), Gaps = 23/441 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ +VWF +DLR D L +A + ++ +YC +P H+ + A R + L +
Sbjct: 3 LGLVWFGDDLRCADQNMLWRAVQEVDYLICLYCDEP-HNNHPSRYATQGMSANRRRLLNQ 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L DL L G L + + L +Y +E +
Sbjct: 62 GLQDLALQLQALGQTLFVSSMDAATSLNLLLNEIPISHLYRNHHGGWDEQQTLNRIESRY 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
V ++ L G +++ +PFD + LPD ++ FR+ +E V
Sbjct: 122 SDV--------------RIHLDHGLSLFTPSQLPFDIAQLPDSFSKFRRLVE-NLDVFTP 166
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ P P+ + I +L ++ F GGE AA+ ++++YF +L
Sbjct: 167 LPALQKLPPAPTF----DIQCIRPWQLK--QIEDNSMFTGGERAAVDQLSDYF-STNLPS 219
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRNE+ G + STKFSPWLA GS+S R I + YER+ AN+STYW+ FEL+WR+
Sbjct: 220 HYKETRNELDGWENSTKFSPWLAQGSLSARQIKASIDVYERDHGANESTYWIYFELLWRE 279
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF + + YG LF GG + + S + F W G T YPL++A MK+L+ TGFMS
Sbjct: 280 YFHWYATCYGKQLFLPGGLSGKQTQGSYYAERFRKWSQGNTPYPLVNACMKQLNETGFMS 339
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQI S L+ ++GIDWR GA +FE L+DY SN+GNW Y AGVG DPR R+F++
Sbjct: 340 NRGRQIVASCLIYELGIDWRYGAAYFEEQLIDYSVGSNWGNWQYIAGVGADPRGGRHFNL 399
Query: 502 PKQAQNYDREGEYVAYWLPQL 522
KQ + YD ++ W Q+
Sbjct: 400 QKQTEQYDPNLHFIHKWQGQI 420
>gi|221068159|ref|ZP_03544264.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
gi|220713182|gb|EED68550.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
Length = 431
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 160/448 (35%), Positives = 239/448 (53%), Gaps = 37/448 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWD-SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W RNDLR+ D L A ++ +LPV C+ ++T H+GF + G R +L
Sbjct: 5 LLWLRNDLRLHDQPVLHAACRMGAQYILPVLCLPDIQART--HWGFARIGPHRRAWLANT 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETC-SEELNVERLVRKNL 201
+ +L ++ LLI +P+LA++ GA + + E+ V+ L L
Sbjct: 63 IQNLAQSFHELRSQLLILDAPAAVALPALAQALGAGIIVCEDIAAPDEQAEVQALRAAGL 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE-AKC---- 256
Q + +W +++ H D +P+ LPD++T FR+++E AK
Sbjct: 123 Q-----------------VHTVWHSSLLHPDQLPWPMRQLPDIFTPFRQAVEHAKLQPYP 165
Query: 257 ---TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKV---SKGMRFVGGESAALGRV 310
+ R+P + PS V ++ S + S GGESAAL +
Sbjct: 166 PLPVLEALPRVPPNI---PSKYRQEQVLALDAFANASNSLDARSAIALLQGGESAALAHL 222
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
+Y + L YK TRN ++G DYS+K+S WLA+G++SPR Y E++ +E R A +S+
Sbjct: 223 RQYL-ARGLPHSYKRTRNGLVGLDYSSKWSLWLATGALSPRQAYAELRQFEATRGATESS 281
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW+ FEL+WRDYFRF+ +++G +L+ G E D + F +W G TG L+DA
Sbjct: 282 YWLWFELLWRDYFRFLHMQHGRALYRARGLGP-ELATPHDDQNFAAWCSGQTGQTLVDAA 340
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M+EL+ TG++ NR RQ+A S+L+ D+G DWR GA WFE+ LLDYD SN GNW Y AG G
Sbjct: 341 MRELAATGYLGNRLRQVAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYIAGRG 400
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYW 518
DP+ R F KQA YD +G Y W
Sbjct: 401 TDPQGGRRFDPVKQAATYDADGAYQRLW 428
>gi|119471065|ref|ZP_01613624.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
gi|119445905|gb|EAW27186.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
Length = 436
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/437 (34%), Positives = 236/437 (54%), Gaps = 28/437 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN K + V+ ++P + T ++ + G + FL++ L
Sbjct: 6 LYWLKNDLRLNDNPIFSKLALQQCALDVVFVINPNWFKNT-NYQQKQYGENKYTFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPS-LAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+L++ L+ RG L + G+P ++ + + VY+++ E+ + L++ +
Sbjct: 65 YELQQALIARGQTLHVLEGEPVSVLKQRIKEQHIDEVVYSEQFGVYEQREI-NLLKAHCP 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q+ + D T+Y +++PF+ + LP +T F+K +EA
Sbjct: 124 QIQFTGTLQD--------------TLYQQNELPFNLTDLPKSFTPFKKKVEAANIPITLS 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPK-VSKGMRFVGGESAALGRVNEYFWKKDLLK 321
I + P P + L + + PK ++ M GG ++A +YF +L
Sbjct: 170 HITTELLPKP-------ITLCAKNPIELPKAINNSMH--GGLTSAQKHCEQYF-AGELPS 219
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK TRN + G D +TKFSPWLA G IS + IY V+ YE+ ANDSTYW+ FEL+WR+
Sbjct: 220 TYKITRNALDGFDNTTKFSPWLAFGCISAKQIYNAVEQYEQTYTANDSTYWIKFELLWRE 279
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF++ +L +SLF G ++ + + F +W G T YPL++A MKEL+ TGF++
Sbjct: 280 YFKWHALNVQSSLFSFKGQKQTKPLTTFMPNRFAAWCQGTTPYPLVNAIMKELNATGFIT 339
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NR RQI S LV ++G+DWR GA +FE L+D+D +N+GNW Y AGVG DPR R+F+I
Sbjct: 340 NRSRQIVASCLVNELGLDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGVDPRGGRHFNI 399
Query: 502 PKQAQNYDREGEYVAYW 518
KQ Q +D + Y W
Sbjct: 400 EKQTQQFDPKSIYTKKW 416
>gi|255533599|ref|YP_003093971.1| DASH family cryptochrome [Pedobacter heparinus DSM 2366]
gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
Length = 430
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/428 (33%), Positives = 221/428 (51%), Gaps = 16/428 (3%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ DNE L++A S+ +LPVY DPR+ + T FG KTG +RA FL+E +
Sbjct: 7 LVWFRNDLRLHDNEMLVEAIAKSDSILPVYFFDPRYFENT-RFGTAKTGIVRASFLLESI 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
LRK G ++L+ GKPE++I L + F VY +E EE + V L
Sbjct: 66 LSLRKAFQRFGGDILLVQGKPEDMIRDLVEQFDIAEVYHHREVGPEETEISGHVEDLLWT 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++ LK G T+Y+ +D+PF +PDV+ F+K E V+ C
Sbjct: 126 LKIN------------LKHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTERDAIVKACFL 173
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF-VGGESAALGRVNEYFWKKDLLKV 322
P + DWG +P ++ L + + ++ GGE + L + + + +
Sbjct: 174 TPEHIDFVENA-DWGQLPSLKDLGFETVAGAMIEKYATGGEDSGLQHLAQLLEAGADIYL 232
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
+ T++ P +S++ S WL G +SPR +Y +VK E N + + L+WRDY
Sbjct: 233 KQNTKHTPEKPGFSSRLSAWLTIGCLSPRMVYWKVKEAEGVFGLNANFSQIFLGLLWRDY 292
Query: 383 FRFISLKYGNSLFHLGGPRK-LEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
FRF+ K+G + K + + E W+ GCT +P++D M +L+ TGF+
Sbjct: 293 FRFMFKKHGIAFLQETDLEKDIMQAIERVDPALEKWKTGCTAHPVVDKYMYDLNATGFIP 352
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
+ GR + ++LV + I W GA +FE L+DY P SN+GNW AG+G D R F +
Sbjct: 353 HSGRLLVATYLVHVLKIHWTCGAAYFEEKLIDYAPASNWGNWASVAGIGKDARSKNTFDL 412
Query: 502 PKQAQNYD 509
KQ + D
Sbjct: 413 NKQIKILD 420
>gi|253998728|ref|YP_003050791.1| DASH family cryptochrome [Methylovorus glucosetrophus SIP3-4]
gi|253985407|gb|ACT50264.1| cryptochrome, DASH family [Methylovorus glucosetrophus SIP3-4]
Length = 454
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 162/459 (35%), Positives = 238/459 (51%), Gaps = 48/459 (10%)
Query: 84 IVWFRNDLRVLDN----EALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
I WFR DLR+ D A+ A +LPV+ DP S T +GF + R +L
Sbjct: 16 IFWFRRDLRLHDQFALAAAIQHAQQQGGWLLPVFVHDPAESGLT-RWGFARMSPHRRAWL 74
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+ L L G +L+ HG + + L ++ G + + EE
Sbjct: 75 ASAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLVCDEIAAPEE--------- 125
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
Q VV + + S ++ IW +++ +++PFD ++PD +T FR ++E + V+
Sbjct: 126 --QAVVAALLAAGVS-----VQTIWQSSLVAAENLPFDPQAVPDTFTTFRHALE-RAHVQ 177
Query: 260 GCIRIPS--SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR------------------F 299
+PS P PS ++P E+ S M F
Sbjct: 178 AARPLPSIKQLPPLPSHALLNAIPS----EVASDGTDHAMACEPWPYDARSAFPLGSSGF 233
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
G E AAL + +Y ++ L YK TRN ++G DYS+K+SPWLA+G++S R + +++
Sbjct: 234 DGSEQAALQHLQQYC-QRRLPHSYKSTRNGLIGVDYSSKWSPWLATGALSARQAWAAIQA 292
Query: 360 YERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRD 419
+E E AN+S+YW+ FEL+WRD+FR++ K+G L+ G + S D F W
Sbjct: 293 FEAEHGANESSYWLWFELLWRDHFRWLHFKHGKRLYRARGLGEAHVP-SHDPDHFARWCR 351
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TG P IDA M+EL+ TG++SNR RQ S+L+ D+G DWR GA WFE+ LLDYD SN
Sbjct: 352 GETGQPFIDAGMRELAATGYLSNRMRQNVASYLIHDLGCDWRAGAAWFESQLLDYDVYSN 411
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
GNW Y +G G DPR+ R F+ KQAQ+YD +G Y A W
Sbjct: 412 QGNWLYLSGRGTDPRQGRRFNPDKQAQDYDADGSYRALW 450
>gi|88859578|ref|ZP_01134218.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
gi|88818595|gb|EAR28410.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
Length = 437
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/440 (36%), Positives = 235/440 (53%), Gaps = 27/440 (6%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
K + + F +DLRVLDN AL DS + ++ +Y P+ + + F + A + FL
Sbjct: 2 KKIGLFIFDHDLRVLDNPALKVLADSVDTLICLYVHVPQDAFSQ-QFSQTQPSAAKLGFL 60
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+ L +L +NL L+I HG ++ + K +G + E + + ++
Sbjct: 61 QQHLVELDENLRLLNQFLVIEHGSVPSVVSNYIKHYGITDIGRTIHAGFNEQHHWQYLQA 120
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
V + S G++++ L D+PF+ + LP +T RK E + TV
Sbjct: 121 TFPAVKFCAHS--------------GSSLFRLADLPFELADLPKSFTPCRKLFE-QLTVP 165
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV-GGESAALGRVNEYFWKKD 318
+ ++ PPP L + + H K S R+ GGE A ++ YF K
Sbjct: 166 APLE-ALTYLPPPL--------LSTEHKKHDLKPSAFNRYYNGGEITAHAYLHHYFSSKA 216
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
+YKETRN ++G D+STK S +LA G++SPR I +K YE + AN+STYW+ FEL+
Sbjct: 217 P-SIYKETRNALMGDDFSTKLSGFLAHGALSPRQIMAALKRYESTQGANESTYWIYFELL 275
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YF + + K+ LF GG R+ S F+ W +G T YPL++A M+EL+ TG
Sbjct: 276 WREYFYWYARKHQQRLFSAGGVRQKSLATSFYPSRFKQWCEGSTPYPLVNALMRELNETG 335
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQI S V ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DPR R+
Sbjct: 336 WMSNRGRQIVASCFVNELELDWRYGAAYFEQRLIDYDVGSNWGNWQYLAGVGPDPRGGRH 395
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F I KQA YD +V +W
Sbjct: 396 FHIKKQAALYDPNNAFVTFW 415
>gi|424044342|ref|ZP_17781965.1| cryptochrome DASH [Vibrio cholerae HENC-03]
gi|408888871|gb|EKM27332.1| cryptochrome DASH [Vibrio cholerae HENC-03]
Length = 410
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/394 (37%), Positives = 216/394 (54%), Gaps = 32/394 (8%)
Query: 129 PKTGALRAQFLIECL--ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKET 186
P+ G + QFL E L +L N +N+ L ++ H P + + A G +Y
Sbjct: 12 PEFGFAKQQFLDESLHCLNLSLNALNQRLQVVDLH--PYQAVKHAADKLGVTHLYVDAVA 69
Query: 187 CSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGT--TMYHLDDIPFDHSSLPDV 244
S+E Q VV Q+ P L +I +++ ++D+PF+ +LPD
Sbjct: 70 GSDE-----------QDVVDKIQAE-----APHLAVIQSEVRSLFSVEDLPFELEALPDT 113
Query: 245 YTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGES 304
+T FRK +E K + + ++ P P + ++ L ++ P + F GGE
Sbjct: 114 FTKFRKKVE-KLALAEPVEAVTTLPPLPDGLALPTLSLTRDIQ---PSL-----FTGGER 164
Query: 305 AALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERER 364
A L +YF L YK+TRN + G DYSTKFSPWLA G +SP+ IY +K YE
Sbjct: 165 AGLEHCRQYF-ASTLASEYKQTRNGLDGMDYSTKFSPWLAHGCLSPKTIYAMLKRYEAAN 223
Query: 365 VANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGY 424
ANDSTYW+ FEL+WR+YF + + +Y LF GG + S F+ W+ G T +
Sbjct: 224 GANDSTYWIYFELLWREYFYWYARRYKRQLFRFGGIQNQAPLTSFYAHRFQQWKKGETPF 283
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
P+++A M +L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FE+ L+DYD SN+GNW
Sbjct: 284 PIVNACMHQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQ 343
Query: 485 YGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
Y AGVG DPR R F++ KQ + YD E++ W
Sbjct: 344 YLAGVGADPRGSRQFNLEKQTEMYDPHMEFIDKW 377
>gi|393216926|gb|EJD02416.1| cryptochrome, partial [Fomitiporia mediterranea MF3/22]
Length = 509
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 176/523 (33%), Positives = 262/523 (50%), Gaps = 80/523 (15%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM---VLPVYCVDPRHSQTTYHFG------FP--- 129
+ I R+DLR+ DN A ++ ++P++ ++P + + FP
Sbjct: 1 ILIYILRHDLRLADNPVFTAASTTNATFTHLIPLFILNPTQYEISGFLKPDEKSPFPEAR 60
Query: 130 -------KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA----- 177
+ G RA+FL E L DL+K+L G +L+IR G+ ++I + KS
Sbjct: 61 SRLGQFWRCGPYRAKFLAESLFDLKKSLQCVGSDLVIRTGEAHDVIGKMIKSLNGGDSEV 120
Query: 178 HAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFD 237
AV+ ++ +EE + ER +RK L V +D+ST + +D+P+
Sbjct: 121 KAVWMTRDFAAEEFDEERKIRKTLPPGVSFRAFSDEST------------LISKNDVPYT 168
Query: 238 HSSLPDVYTHFRKSIE-----AKCTVRGCIRIPS----------SFGPPPSVVDWGSV-- 280
+ LPDV+T F+KS+E A ++ IP F P ++ D S
Sbjct: 169 AADLPDVFTSFKKSVEPLRSNAGMPIQNIPSIPPIPNDIPAQLHPFIIPKTLDDLISALQ 228
Query: 281 -PLIEQLELHSPKVSKGM----RFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDY 335
PL + ++ P +G F GG +AA R++ D + YK+TRN ++G D+
Sbjct: 229 QPLFNKPDIPLPAFPEGSFSAHPFKGGSTAARARLSHLI-SSDAVSTYKDTRNGLIGWDF 287
Query: 336 STKFSPWLASGSISPRYIYEEVKSYERE---RVANDSTYWVLFELMWRDYFRFISLKYGN 392
STK S +LA G IS ++ +K +E E N T + FEL+WRDY R KYG
Sbjct: 288 STKLSAYLAYGCISAGQVHAALKKWEDEFNDGQENKGTTAIRFELLWRDYMRLCLDKYGT 347
Query: 393 SLFHL-----GGPRKLEYKWS------QDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
F L G + + +W + ++ F+ W G TG LIDA +EL +TG+ S
Sbjct: 348 DFFQLYGFGKKGRKGGDVEWKIPSADPRAKEAFKRWLTGRTGTGLIDAAQRELLLTGYTS 407
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NR RQ SFL + IDWR+GAEWFE+ L+DYD SN+GNW Y AGVGNDPRE+R F+
Sbjct: 408 NRTRQNTASFLAARLRIDWRLGAEWFESMLIDYDCASNWGNWAYVAGVGNDPRENRMFNP 467
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSL 544
KQA +YD +GEY+ W+ +E R+ S I Q+ L
Sbjct: 468 VKQANDYDPKGEYIRAWV-------EEARDVEDASCIWQLWKL 503
>gi|410615191|ref|ZP_11326217.1| cryptochrome DASH [Glaciecola psychrophila 170]
gi|410165275|dbj|GAC40106.1| cryptochrome DASH [Glaciecola psychrophila 170]
Length = 421
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 154/451 (34%), Positives = 235/451 (52%), Gaps = 53/451 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ WFR+DLR++DN + + ++++ VY V + F T L+ F +
Sbjct: 7 TGLYWFRHDLRLIDNPTFNQLCEQVDVLICVY-VQGYTKELQGSFCVGNTSKLKETFEHQ 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKS-----FGAH---AVYAQKETCSEELNV 193
+ L +L ++ LL + L FG+ VY QK
Sbjct: 66 SVLALDADLRHKNQYLLFLDTPSHSALYDLVHKYKVTHFGSDWHPGVYEQKS-------- 117
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLI--WGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
L + ND PQ+K I G +++ D+PF+ LP +T FRK
Sbjct: 118 ------------LQALHNDC----PQVKFISETGYSLFSRTDLPFELEDLPKSFTPFRKQ 161
Query: 252 IEA---KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALG 308
+E+ V +++PS+ P P V +QL ++KG+ GGE AA
Sbjct: 162 VESLTIDAPVEALLKLPSAIEPSPEVP--------QQL------LTKGV-VTGGEKAATA 206
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND 368
++N+Y + DL++ YK+TRN + D S+K S WLA+G +S R +Y +K YE +R AND
Sbjct: 207 QLNKYLFGTDLIRQYKQTRNALDDWDSSSKLSLWLANGCLSVRTVYHTIKQYEVQRGAND 266
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
STYW+ FEL+WR+YF++ K+ LF+ G +++ +Q+ F W +G T YP+++
Sbjct: 267 STYWLYFELLWREYFQWYLAKHQAKLFYFSGIQQVAPLSEFNQQTFTRWCEGMTEYPIVN 326
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L +G+MSNRGRQ+ S V ++G+DWR GA +FE L+DYD SN+GNW Y AG
Sbjct: 327 ACMRQLKQSGYMSNRGRQLVASCFVHELGLDWRYGAAYFEQQLIDYDVASNWGNWQYLAG 386
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWL 519
VG DPR R F + KQ YD + + WL
Sbjct: 387 VGADPRGHRRFDLAKQTATYDPQAVFRDKWL 417
>gi|315123107|ref|YP_004065113.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
gi|315016867|gb|ADT70204.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
Length = 436
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 151/436 (34%), Positives = 225/436 (51%), Gaps = 26/436 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN L + V+ ++P ++ + P G + +FL++ L
Sbjct: 6 LYWLQNDLRIDDNPILNDLSQQQCELDIVFVINPAWFKSNNYQQKP-YGVHKQRFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA-HAVYAQKETCSEELNVERLVRKNLQ 202
+L+++++ G L I G P ++ G VY+++ E+ + L +
Sbjct: 65 YELQESVLGLGQTLHILEGDPVRVLTQRINELGIDEVVYSEQIGVYEQRQITAL-KSKCA 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
VV S D T+Y +PF+ + LP +T FRK IEA +
Sbjct: 124 TVVFKSVMQD--------------TLYQQQQLPFELADLPTGFTPFRKKIEATGISLSSV 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
+ PPP + L + + P + GG A L +YF L
Sbjct: 170 PFSAKRLPPPII-------LCAKQPISEPPTGNPL-LQGGHKAGLAHCLQYF-SSALPSS 220
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YK TRNE+ G D STKFS WLA G IS + I+ V +YE + N+STYW+ FEL+WR+Y
Sbjct: 221 YKITRNELGGFDNSTKFSSWLAFGCISAKQIFCAVDAYEAQHGENESTYWIKFELLWREY 280
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F++ ++ + LF G ++ + F W G T +PL++A MKEL+ TGF++N
Sbjct: 281 FKWHAINVKHQLFTFKGKKQSSPLTTFSPNRFAKWCQGSTPFPLVNAIMKELNATGFITN 340
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
R RQIA S LV ++ +DWR GA +FE L+DYD +N+GNW Y AGVG DPR R+F++
Sbjct: 341 RSRQIAASCLVNELQLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRGGRHFNLA 400
Query: 503 KQAQNYDREGEYVAYW 518
KQ Q YD GEY+A W
Sbjct: 401 KQTQQYDPHGEYIAKW 416
>gi|91224260|ref|ZP_01259523.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
gi|91191171|gb|EAS77437.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
Length = 422
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 151/412 (36%), Positives = 220/412 (53%), Gaps = 28/412 (6%)
Query: 109 VLPVYCVDPRHSQTTYHFGFPKT-GALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEI 167
++ +YC P + +HF + G + QFL L++L ++L + G L P++
Sbjct: 4 LICLYCY-PSMTPYLHHFAQEASFGRAKLQFLDSSLSELNQSLNHLGQRLWAVELTPDQA 62
Query: 168 IPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTT 227
I FG +YA S+E ++ L + V + +H ++K T
Sbjct: 63 IKYAVNRFGVTHIYADAFPGSDE-------QQALDRAV-------EGASHVKIKQQAIRT 108
Query: 228 MYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQL- 286
+ + +PFD S+LP +T FRK +E R P S+ +PL L
Sbjct: 109 LLREEQLPFDLSNLPTTFTQFRKQVEGLDISR----------PHESIRSLPPIPLGVNLP 158
Query: 287 ELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASG 346
+ + F GGES L +YF L YK+TRN + G DYSTKFSPWLA G
Sbjct: 159 SVTAYYFDAKAAFHGGESRGLEHCRQYF-ASTLASEYKQTRNGLDGMDYSTKFSPWLAHG 217
Query: 347 SISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK 406
+SP+ IY +K YE E ANDSTYW+ FEL+WR+YF + + ++ LF GG +
Sbjct: 218 CVSPKTIYAMLKRYEAENGANDSTYWIYFELLWREYFYWYARRHKRQLFRFGGIQNRAPL 277
Query: 407 WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEW 466
S F+ W+ G T +P+++A M +L+ TG+MSNRGRQ+ S LV ++G+DWR GA +
Sbjct: 278 TSFYAHRFQQWKKGETPFPIVNACMHQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAY 337
Query: 467 FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
FE+ L+DYD SN+GNW Y AGVG DPR R F++ KQ + YD E++ W
Sbjct: 338 FESQLVDYDVASNWGNWQYLAGVGADPRGSRQFNLEKQTEMYDPHMEFIDRW 389
>gi|330447966|ref|ZP_08311614.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328492157|dbj|GAA06111.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 441
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 153/443 (34%), Positives = 233/443 (52%), Gaps = 34/443 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+ W DLR+ DNE + D ++ +L VY ++P+ QT + G +R +FL++
Sbjct: 5 ALYWLTQDLRLHDNEIFHQVRDHADNLLCVYFIEPQ-WQTFNRYQLKSMGEIRHRFLLQS 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L NL G L++ +P +P+L + + +Y + E + +++
Sbjct: 64 LQTLHSNLTRFGQQLVVVQAEPLLSLPALIQQHRINVIYRSRHCGWYEQQQWQYIKQYF- 122
Query: 203 QVVLSSQSNDKSTNHPQLKLIW--GTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
P L+ + T+Y +PF S +P Y+ FRK IE V
Sbjct: 123 ---------------PHLRFVEVDTHTLYSQQQLPFHLSDMPSGYSKFRKLIERDTNVTK 167
Query: 261 CIRIPSSFGPPPSV-----VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+ P PPP + +D G V + + + + + GGE+AAL + +YF
Sbjct: 168 PLPQPEYLPPPPKMNSSDYLDIGRVYIAD---------NSNVEWQGGENAALMHLKQYF- 217
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
D YKETRN + G + STKFSPWLA GS+S + I +K YE+ AN STYW+ F
Sbjct: 218 SCDAPANYKETRNALAGWELSTKFSPWLACGSLSAKTIMAALKDYEQNVTANSSTYWIFF 277
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WR++F++ + G L+ G + S F+ W G T YPL++A MK+L+
Sbjct: 278 ELLWREFFQWHAHVVGRHLYRFSGVQNKRLLTSFYPSRFKQWCSGSTPYPLVNAFMKQLN 337
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+MSNRGRQI S LV ++ +DWR GA +FE L+D+D SN+GNW Y AGVG D R+
Sbjct: 338 QTGYMSNRGRQIVASCLVNELSLDWRYGAAYFEQQLIDHDMASNWGNWQYIAGVGTDSRD 397
Query: 496 DRYFSIPKQAQNYDREGEYVAYW 518
R+F I KQ + +D + ++ +W
Sbjct: 398 KRWFDIEKQTRLFDPDHAFIRHW 420
>gi|392537198|ref|ZP_10284335.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas marina mano4]
Length = 436
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 151/437 (34%), Positives = 234/437 (53%), Gaps = 28/437 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN K + V+ ++P + T ++ + G + FL++ L
Sbjct: 6 LYWLQNDLRLNDNPIFSKLALQQCALDVVFVINPNWFKNT-NYQQKQYGENKYTFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA-HAVYAQKETCSEELNVERLVRKNLQ 202
+L++ L+ RG L + G+P ++ K VY+++ E+ + L++ +
Sbjct: 65 YELQQALIARGQTLHVLEGEPVSVLKQRIKDQHIDEVVYSEQFGVYEQREI-NLLKAHCP 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+V + D T+Y +D+PF+ + LP +T F+K +EA
Sbjct: 124 EVQFTGTLQD--------------TLYQQNDLPFNLTDLPKSFTPFKKKVEAANIPITLS 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPK-VSKGMRFVGGESAALGRVNEYFWKKDLLK 321
I + P P + L + + PK V+ M GG ++A +YF +L
Sbjct: 170 HITTELLPKP-------ITLCAKNPIELPKAVNNSMH--GGLTSAQKHCEQYF-AGELPS 219
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK TRN + G D +TKFSPWLA G IS + IY V+ YE+ ANDSTYW+ FEL+WR+
Sbjct: 220 TYKITRNALDGFDNTTKFSPWLAFGCISAKQIYNAVEQYEQTYTANDSTYWIKFELLWRE 279
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF++ +L +SLF G ++ + + F +W G T YPL++A MKEL+ TGF++
Sbjct: 280 YFKWHALNVQSSLFSFKGQKQTKPLTTFMPNRFAAWCQGTTPYPLVNAIMKELNATGFIT 339
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NR RQI S LV ++ +DWR GA +FE L+D+D +N+GNW Y AGVG DPR R+F+I
Sbjct: 340 NRSRQIVASCLVNELALDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGVDPRGGRHFNI 399
Query: 502 PKQAQNYDREGEYVAYW 518
KQ Q +D + Y W
Sbjct: 400 EKQTQQFDPKSIYTKKW 416
>gi|388256896|ref|ZP_10134076.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
gi|387939100|gb|EIK45651.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
Length = 430
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 155/443 (34%), Positives = 239/443 (53%), Gaps = 26/443 (5%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AI WFR DLR+ DN + +++ V+ VY + P + G R FL+E
Sbjct: 4 AIYWFRYDLRLHDNPGWSQLVANNDWVIGVYVL-PDRWLRPLRYQQKSLGIHRQHFLLES 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEEL-NVERLVRKNL 201
L LR+ L +G +L++ G P + L + + A+ + S+E +VERL +++
Sbjct: 63 LQQLRQQLRTQGSDLIVVVGDPATALTGLVERWNVSAMATGEYPGSDEQRDVERL--RDM 120
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ L N T++ ++PF + LP +++ FRK +EA+
Sbjct: 121 LDIPLRCHEN--------------FTLFDRAELPFALADLPLIFSQFRKLVEARPCSMPL 166
Query: 262 IRIPSSFGP------PPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
R P+ P P + W + +QL P ++ + F GG +A L ++ +
Sbjct: 167 PRAPNLRQPVVLEDSPCELDQWLGIMRAQQLV--QPADNRRLPFHGGSTAGLAQLQYFLG 224
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ L+ YK TRN + G D+S+K SPWLA G +S R +K YE+ AN+S+YW+ F
Sbjct: 225 EHKLISNYKNTRNGLDGWDFSSKLSPWLAMGCLSARQAVRAIKDYEQAHGANESSYWLYF 284
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WR+YF++++ ++G LF L G + S + F +W G TG +DA M++L+
Sbjct: 285 ELLWREYFQWLAFRFGKQLFALRGVQNKNPLLSFYPEAFAAWCAGNTGNQFVDAFMRQLA 344
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+MSNRGRQI S+L+ +G+DWR GA WFE L+DYD +N+GNW Y AGVG DPR
Sbjct: 345 ATGWMSNRGRQIVASYLINQLGVDWRYGAAWFEQQLIDYDCAANWGNWQYLAGVGTDPRG 404
Query: 496 DRYFSIPKQAQNYDREGEYVAYW 518
R F+I KQ YD +GE++ W
Sbjct: 405 RREFNIQKQRDTYDPDGEFIQRW 427
>gi|163803660|ref|ZP_02197523.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
gi|159172532|gb|EDP57394.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
Length = 446
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 153/438 (34%), Positives = 225/438 (51%), Gaps = 26/438 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGF-PKTGALRAQFLI 140
+ + WF N+LR+ DN L + + ++ +YC P+ HF + G + +FL
Sbjct: 5 IGLYWFTNELRIHDNPLLAEVDKAVSELICIYCY-PKLPPFLTHFAQEAQFGQNKLRFLD 63
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
E L L +L R L + P + I + +Y + +E +V +R +
Sbjct: 64 ESLHCLNLSLNARNQRLQVVDLLPYQAIKHAIEKLDVTHLYCDAFSGVDEQDVIDKIRSD 123
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ + + +++ LDD+PF +LP +T FRK +E K V
Sbjct: 124 FPHLTICQREV--------------RSLFALDDLPFSLENLPGTFTKFRKLVE-KLPVSK 168
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ SS P P + ++ LI K F GGE A L +YF
Sbjct: 169 PVATVSSLPPIPEGLALPTLRLIGD--------GKSYLFNGGEQAGLEHCQQYF-SSISA 219
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
YK+TRN + G +YSTKFSPWLA G +SP+ I + YE ANDSTYW+ FEL+WR
Sbjct: 220 SDYKQTRNGLDGMEYSTKFSPWLAHGCLSPKVICAMLSRYEHVNGANDSTYWIYFELLWR 279
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
+YF + + KY + LF GG R S F+ W+ G T +P+++A M +L+ TG+M
Sbjct: 280 EYFYWYARKYKHQLFRFGGIRNQVPLTSFYGHRFQQWKQGETPFPIVNACMHQLNETGYM 339
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ+ S LV ++G+DWR GA +FE+ L+DYD SN+GNW Y AGVG DPR R F+
Sbjct: 340 SNRGRQLVASCLVHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGADPRGARQFN 399
Query: 501 IPKQAQNYDREGEYVAYW 518
+ KQ + YD ++ W
Sbjct: 400 LKKQTEIYDPNMAFINRW 417
>gi|416411248|ref|ZP_11688726.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260330|gb|EHJ09764.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 222
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/220 (53%), Positives = 161/220 (73%), Gaps = 3/220 (1%)
Query: 239 SSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKV-SKG- 296
S LP+V+T FRK +E TV + P P + + G+VP +E+LEL PK S+G
Sbjct: 2 SKLPEVFTSFRKKVEKNSTVNPILISPRKLRSLPDI-EVGNVPSLEELELEKPKYDSRGV 60
Query: 297 MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE 356
+ F GGE+ + R+N YFW+++ LK YKETRN MLG DYS+KFSPWLA+G +SPRYIYEE
Sbjct: 61 LEFKGGETEGIQRLNNYFWERNCLKEYKETRNGMLGADYSSKFSPWLANGCLSPRYIYEE 120
Query: 357 VKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFES 416
V+ YE +R+ N+STYW++FEL+WRDYFRFIS K+GN +F+ G + ++ W +DQ+ F+
Sbjct: 121 VQKYEEKRIKNNSTYWLIFELLWRDYFRFISAKHGNKIFYQSGLQGVDIPWKEDQERFKL 180
Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDM 456
W++G TGYPL+D NM+EL+ TGFMSNRGRQ SFL + +
Sbjct: 181 WQEGNTGYPLVDGNMRELAATGFMSNRGRQNVASFLTKKL 220
>gi|348029288|ref|YP_004871974.1| deoxyribodipyrimidine photolyase [Glaciecola nitratireducens
FR1064]
gi|347946631|gb|AEP29981.1| Deoxyribodipyrimidine photolyase [Glaciecola nitratireducens
FR1064]
Length = 434
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 226/452 (50%), Gaps = 35/452 (7%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP--KTGALRAQ 137
K V I WFR DLR+ DN +L + ++ VY + S + G R
Sbjct: 3 KKVGIHWFRKDLRIQDNASLASIASQVDELVCVYLYQGQTSPNSVAIDNKDEAIGKHRIN 62
Query: 138 FLIECLADLRKNL--MNRGLNLLIRHGKPE-EIIPSLAKSFGAHAVYAQKETCSEELNVE 194
F+ + L L+ L +N+ L +L +G + + L A V A+ E
Sbjct: 63 FINQSLIQLQDALNGLNQRLIILPVNGSSSLQQLLDLVDELNATHVSAEWHCGFNE---- 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
RL + LQ + S N + +T+Y + PF ++P ++ FRK +E
Sbjct: 119 RLQWQALQDTLKESAPNVQFIQEN------SSTLYDISQFPFSVENMPGTFSPFRKKLEK 172
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGM--------RFVGGESAA 306
C V+ S+P + L L S + + GGE +A
Sbjct: 173 YCEVKSVAE------------KLHSLPRMSDLTLEKSMCSSTLAVANNHYPKLAGGELSA 220
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
++ Y W D + YKETRN + G D+S+K S WL+ G +S R ++ E+K+YE RV
Sbjct: 221 HKQLEYYLWNTDHISKYKETRNGLDGWDFSSKLSAWLSIGCVSARQVFAELKNYESARVK 280
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
NDSTYW+ FEL+WR++F + Y LF G + + + D F+ W+ G TG+P+
Sbjct: 281 NDSTYWLFFELLWREFFHWHHFVYAERLFSASGVQGIVRSRNFDPNKFQQWQQGETGFPI 340
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++LS TGF+SNRGRQ+ S ++G+DWR GA++FE L+D+D SN+GNW Y
Sbjct: 341 VDACMRQLSKTGFISNRGRQLVASCFAHELGLDWRYGAKYFEYQLIDFDVASNWGNWQYL 400
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
GVG DPR R F++ KQ + YD E++ W
Sbjct: 401 GGVGADPRGHRQFNLVKQTEIYDPNHEFINKW 432
>gi|255038083|ref|YP_003088704.1| deoxyribodipyrimidine photo-lyase, partial [Dyadobacter fermentans
DSM 18053]
gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
18053]
Length = 396
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/415 (34%), Positives = 222/415 (53%), Gaps = 30/415 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I WFRNDLR+ DN+AL A S++ ++PVY DPR + T GF +TGALRA+FLIE +
Sbjct: 6 IYWFRNDLRLKDNQALSAAVGSADEIIPVYVFDPRQFEKT-KLGFRRTGALRARFLIESV 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A+LR+N+ +G +L+IR G PE I+ LA+ + A VY KE +E +E + KNL+
Sbjct: 65 AELRENIRQKGGDLIIRTGAPEAIVAQLAEDYNADYVYTSKEIAPQETRIESSLSKNLK- 123
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
T + +KL W TM + D+PF S LP + F + + ++
Sbjct: 124 -----------TANVDIKLFWMDTMINATDLPFPVSKLPSGFAEFERLLSNDLKIKDQFP 172
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEY---FWKKD 318
P+S P V + G++P + +L + ++ G GGE+ AL + EY + KKD
Sbjct: 173 TPASITLPADV-EAGAIPGLPELGIDPNEIPAGTTGPLAGGEARALAVLKEYVEEYVKKD 231
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
+ E P T+ S WL+ G +S YIY VK+ + V D ++ L+
Sbjct: 232 IAYPSAE-------PLTDTRLSDWLSLGCVSASYIYRSVKTAQSHAVVEDP---IITNLL 281
Query: 379 WRDYFRFISLKYGNSLFHLGGPRK-LEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
R++ + L++G +F G + +W D FE W +G TG I+ ++ L+ T
Sbjct: 282 RREFLHWTLLRFGPRMFKPSGVKHHFNRRWKNDNAAFEKWINGQTGDQSINDIIRRLTAT 341
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
GF++ R+ A +LV D+ I+W GA +FE+ L+DY+ N+G W + AGVG D
Sbjct: 342 GFITAAERESAARYLVDDLDINWTWGAMYFESLLMDYEASVNWGRWNHIAGVGED 396
>gi|260772745|ref|ZP_05881661.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
metschnikovii CIP 69.14]
gi|260611884|gb|EEX37087.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
metschnikovii CIP 69.14]
Length = 451
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 156/447 (34%), Positives = 236/447 (52%), Gaps = 34/447 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQ-FLIE 141
++ WF NDLR+ DN L +A +S + Y + P + F + L Q FL+E
Sbjct: 5 SLYWFTNDLRISDNPLLTQAAQNSHQLTCCYLI-PSLTPLDQRFQVVASNGLAKQRFLLE 63
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LADL L G +L I G+ + + A+ +Y + +V+ + + L
Sbjct: 64 SLADLDAKLQTLGQSLQIATGEAVSQLCQFIELTEANHLYVSE-------SVDFAIHQTL 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTT--MYHLDDIPFDHSSLPDVYTHFRKSIEA----- 254
++V L +PQL ++ T ++ ++PF ++LPD ++ FRK +E+
Sbjct: 117 REVRL---------RYPQLTVVSLNTHRLFEQAELPFSLAALPDSFSVFRKQVESLEGRY 167
Query: 255 -KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQ--LELHSPKVSKGMRFVGGESAALGRVN 311
+ R I + I LEL S + +G GESAAL +
Sbjct: 168 SSQSARWNSDITALPPSVLPSSSSWLSTAIRSINLELRSSPLWRG-----GESAALEHLE 222
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
+YF D +YK+TRN + + STKFSPWLA+G +S + + YE +R AN+STY
Sbjct: 223 DYF-SSDASLIYKQTRNALDEWESSTKFSPWLANGCLSIGRLLARLNDYETQRGANESTY 281
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
W+ FEL+WR+YF++ +LKYG LF G + S + SW +G T YP+++A M
Sbjct: 282 WIYFELLWREYFQWYALKYGAQLFQFSGIKGQVPLTSYYPQRMRSWINGTTPYPIVNAAM 341
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
K+L TG++SNR RQ+ S LV ++ IDWR GA++F++ L+DYD SN+GNW Y AGVG
Sbjct: 342 KQLKATGYLSNRSRQLVASCLVHELSIDWRYGAQYFQSQLIDYDVASNWGNWQYLAGVGA 401
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYW 518
DPR R F + KQ YD E ++ +W
Sbjct: 402 DPRGHRRFDLAKQTALYDPELSFIRHW 428
>gi|392310270|ref|ZP_10272804.1| deoxyribodipyrimidine photolyase single-strand-specific
[Pseudoalteromonas citrea NCIMB 1889]
Length = 449
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/449 (34%), Positives = 233/449 (51%), Gaps = 36/449 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQ-- 137
K + + F D RV DN+AL S + ++ +YCV P QT Y F +T A AQ
Sbjct: 2 KRIGLYLFTQDCRVQDNDALYLLASSVDTLICLYCVAP---QTRYDKQFSQTTASEAQKG 58
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
+L L L+ +L G L + +G +I F V + E ++ + +
Sbjct: 59 YLKSTLQGLQNSLAQLGQTLNVEYGDRRGVIADYISRFEITHVASSIPVAYNESHMWQWL 118
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE--AK 255
+ V + +N + +Y+ +PFD + LP ++ FRK IE A+
Sbjct: 119 KSTFSHVNFQTANNSQ--------------IYYRTQLPFDLAELPKSFSSFRKFIERDAQ 164
Query: 256 CTVRGCI-RIPSSFGPPPSVVDWGSVPLIEQLELHSPKV---SKGMRFVGGESAALGRVN 311
C I + P PPP P + Q +L PK ++ + GGE A +
Sbjct: 165 CERTETIPQRPCFHLPPP--------PCLMQFKL--PKYLINTQNNDYYGGEENAQKHLR 214
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
YF D YK+TRN + G +ST FSP+LA G++SP+ + + YE + +N+STY
Sbjct: 215 GYF-NSDAASGYKQTRNALHGNHFSTLFSPYLAHGALSPQQVLRALNEYENQHGSNESTY 273
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
W+ FEL+WR+YF + S + ++LF G + S + F +W +G T PLI+A +
Sbjct: 274 WIYFELLWREYFHWYSQLHQSALFKFTGITNTKPLTSFYPQRFAAWCNGNTPEPLINALI 333
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
EL+ TG++SNRGRQI S+LV ++ +DWR GA +FE L+DYD SN+GNW Y AGVG
Sbjct: 334 NELNKTGWISNRGRQIIASYLVNELQVDWRYGAAYFEQRLIDYDVASNWGNWQYIAGVGA 393
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLP 520
D + R+F+I KQ + YD +GEY W P
Sbjct: 394 DTKGGRHFNIQKQVRLYDPDGEYTRQWSP 422
>gi|400288682|ref|ZP_10790714.1| deoxyribodipyrimidine photolyase [Psychrobacter sp. PAMC 21119]
Length = 460
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 165/462 (35%), Positives = 231/462 (50%), Gaps = 48/462 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM--VLPVYC---VDPRHSQTTYH-FGFPKTGALR 135
V +V F NDLRV DN LLKA + S +L VY D S+ Y + + G R
Sbjct: 14 VTLVLFHNDLRVADNATLLKASEISTKGKLLLVYASSLTDILDSKDHYDAYRYDSIGQAR 73
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER 195
QFL E LADL +L+ RG LL L K A V+ Q +
Sbjct: 74 QQFLHESLADLNASLIQRGNRLLY-----------LQKGNEALNVFTQ---------LSN 113
Query: 196 LVRKNLQQVVLSSQSNDKSTN---------HPQLKLIWGTTMYHLDDIPFDHSSLPDVYT 246
L+ + + SQ+ D + N +P++ TT D++P + LP +T
Sbjct: 114 LIAQQQVTDICISQTADYNQNKVYDLLQAKYPEIHWHIDTTATLFDELPLEQ--LPKSFT 171
Query: 247 HFRKSIEAKCTVRGCIR------IPSSFGPPPSVVDWGSVPLIE-QLELHSPKVSKGMR- 298
FRK IE+ + + P S P P + E QL + + +
Sbjct: 172 QFRKQIESDYDLLHAEKDIAIYPTPESLAPLPESMQSRDEYFFESQLSNQAGRDEPSQQP 231
Query: 299 --FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE 356
F GGE L ++ YF D YK TRN + +STKFS WLA+GS+S +
Sbjct: 232 SSFRGGELNGLKHLDAYF-CSDAPSTYKTTRNALDDWTHSTKFSAWLANGSLSVNTVLNR 290
Query: 357 VKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFES 416
++ YER+ +ANDSTY + FEL+WR+YF + + + LF G + D+ L
Sbjct: 291 LRRYERDIIANDSTYGIWFELLWREYFYWYATTHKEKLFWFKGIAQHAPSTQLDENLLAQ 350
Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDP 476
W+ G T YP+++A M +LS TG+MSNRGRQ+ S + ++G+DWR GA +FE L+DYD
Sbjct: 351 WKSGTTQYPIVNACMNQLSTTGYMSNRGRQLVASCFIHELGLDWRYGAAYFEQHLVDYDV 410
Query: 477 CSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
SN+GNW Y AGVG DPR R F++ KQ Q YD GE++ W
Sbjct: 411 GSNWGNWQYLAGVGADPRGCRQFNLNKQTQQYDPNGEFIRQW 452
>gi|388600247|ref|ZP_10158643.1| deoxyribodipyrimidine photolyase [Vibrio campbellii DS40M4]
Length = 398
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/387 (36%), Positives = 207/387 (53%), Gaps = 24/387 (6%)
Query: 132 GALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEEL 191
G+ + QFL E L L +L L + P + I + G +Y SEE
Sbjct: 3 GSAKRQFLDESLHCLNLSLNAFDQRLQVVDLHPYQAIKHAVEKLGVTHLYCDAFPGSEEQ 62
Query: 192 NVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
+V +R+ L+ + + Q ++ ++D+PF LPD +T FRK
Sbjct: 63 DVVDHIRQELEHLTICQQEV--------------RSLLTVEDLPFALEDLPDTFTKFRKM 108
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
E +++ ++ P P + ++ LI + K F GGE A L
Sbjct: 109 AE-NVSLKEPFATVTALPPIPLGLALPTLRLIRDV--------KSCLFTGGEQAGLEHAR 159
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
YF L YK+TRN + G DYSTKFSPWLA G +SP+ IY +K YER + AN+STY
Sbjct: 160 RYF-SSTLASEYKQTRNGLDGMDYSTKFSPWLAHGCLSPKTIYAMLKRYERLKGANESTY 218
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
W+ FEL+WR+YF + + ++ LF GG + S F+ W+ G T +P+++A M
Sbjct: 219 WIYFELLWREYFYWYARRHKRQLFRFGGIQNQAPLTSFYAHRFQQWKKGETPFPIVNACM 278
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FE+ L+DYD SN+GNW Y AGVG
Sbjct: 279 HQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGA 338
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYW 518
DPR R F++ KQ + YD E++ W
Sbjct: 339 DPRGSRQFNLEKQTEIYDPHMEFIDRW 365
>gi|359447933|ref|ZP_09237491.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20480]
gi|358046252|dbj|GAA73740.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20480]
Length = 436
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/437 (33%), Positives = 233/437 (53%), Gaps = 28/437 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W +NDLR+ DN K + V+ ++P + T ++ + G + FL++ L
Sbjct: 6 LYWLQNDLRLNDNPIFSKLALQQCALDVVFVINPNWFKNT-NYQQKQYGENKYTFLMQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPS-LAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+L++ L+ G L + G+P ++ + + VY+++ E+ + L++ +
Sbjct: 65 YELQQALIACGQTLHVLEGEPVSVLKQRIKEQHIDEVVYSEQFGVYEQREI-NLLKAHCP 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + D T+Y +D+PF+ + LP +T F+K +EA
Sbjct: 124 ETQFTGTLQD--------------TLYQQNDLPFNLTDLPKSFTPFKKKVEAANIPITLS 169
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPK-VSKGMRFVGGESAALGRVNEYFWKKDLLK 321
I + P P + L + + PK V+ M GG ++A +YF +L
Sbjct: 170 HITTELLPKP-------ITLCAKNPIELPKAVNNSMH--GGLTSAQKHCEQYF-AGELPS 219
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK TRN + G D +TKFSPWLA G IS + IY V+ YE+ ANDSTYW+ FEL+WR+
Sbjct: 220 TYKITRNALDGFDNTTKFSPWLAFGCISAKQIYNAVEQYEQTYTANDSTYWIKFELLWRE 279
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF++ +L +SLF G ++ + + F +W G T YPL++A MKEL+ TGF++
Sbjct: 280 YFKWHALNVQSSLFSFKGQKQTKPLTTFMPNRFAAWCQGTTPYPLVNAIMKELNATGFIT 339
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NR RQI S LV ++ +DWR GA +FE L+D+D +N+GNW Y AGVG DPR R+F+I
Sbjct: 340 NRSRQIVASCLVNELALDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGVDPRGGRHFNI 399
Query: 502 PKQAQNYDREGEYVAYW 518
KQ Q +D + Y W
Sbjct: 400 EKQTQQFDPKSIYTKKW 416
>gi|85711299|ref|ZP_01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
gi|85694800|gb|EAQ32739.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
Length = 441
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 231/440 (52%), Gaps = 28/440 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+VWF DLR++DN L++A + + ++ + +D + +G R +++ +
Sbjct: 7 TGLVWFNLDLRLIDNLTLIRAAEQCQQLVCCFVIDESWFKGN-RYGLNGISQPRWRYIQQ 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ADL +L G L+IR G+P I +L + AVY CS++ V R +
Sbjct: 66 AIADLAASLQQHGQQLIIRKGQPTTEISTLISTLEVDAVY-----CSDDPGVYERRRWDT 120
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ ++ +NH T+ ++ F LP Y+ FRK E
Sbjct: 121 LVKRFPYITFERVSNH---------TLLTERELDFPLEELPATYSAFRKRFEP------- 164
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLEL---HSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
+ +F ++ ++P + + + H+P V GGE AA + +YF K
Sbjct: 165 --LAETFPSGQALSQLKALPPMPRRTIASEHTPFVEPSGYLQGGELAAHEHLTQYF-KSS 221
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
YKETRN + STK S LA G+ISPR + + +++YE + AN+STYW++FELM
Sbjct: 222 APSHYKETRNALDNFADSTKLSAALALGNISPRQVIDALRNYEATQGANESTYWIVFELM 281
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YF + ++ +F GG + + S + F +W G T YP+++A M +L+ TG
Sbjct: 282 WREYFHWYLRRFQEKVFKFGGIQDKKPTTSFYSQRFAAWCQGKTPYPIVNACMHQLNQTG 341
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ+ S L+ ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DPR R
Sbjct: 342 YMSNRGRQLVASCLIHELQLDWRYGAAYFEQQLIDYDVASNWGNWQYLAGVGADPRGSRR 401
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F++ KQ Q YD GE++ W
Sbjct: 402 FNLDKQTQTYDPNGEFIKRW 421
>gi|254506014|ref|ZP_05118159.1| cryptochrome dash [Vibrio parahaemolyticus 16]
gi|219551237|gb|EED28217.1| cryptochrome dash [Vibrio parahaemolyticus 16]
Length = 412
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 148/440 (33%), Positives = 225/440 (51%), Gaps = 42/440 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHF-GFPKTGALRAQFLI 140
V + WF NDLR L+N L +A + + ++ VYC+ P ++ F G G R +F+
Sbjct: 5 VGLYWFINDLRRLNNSLLDRAINEVDELVAVYCL-PHVTEYLAAFSGEHNLGTHRERFIH 63
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ + DL ++L G+ L I + + + + G +Y + +E + ++++
Sbjct: 64 QSVEDLSESLAALGVELNIVEQGTTKAVAEIIEQRGVSHLYVSEVAGFDETVMINVIKQK 123
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWG--TTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
P L++I TT++H D +PF LP +T FRK +E
Sbjct: 124 F----------------PTLEVIQSDNTTLFHSDQLPFPLDELPATFTQFRKQVE----- 162
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
P ++ L E+ +P VGGE AA+ V YF +
Sbjct: 163 -----------PIFELLYPSQDALYRLGEIATPT-----GVVGGERAAIQHVTWYF-SQP 205
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
YKETRN + G ST FSPWLA G ISP I ++ YE+ AN STYW++FEL+
Sbjct: 206 FASSYKETRNHLEGESSSTHFSPWLALGCISPAQIVALLRQYEQRNGANQSTYWIIFELL 265
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YF + K+ +F+ G + D + F+ W G T + ++++ M +L+ TG
Sbjct: 266 WREYFYWYGRKHQQRVFYFSGLTSKQALKPFDDEAFQRWVKGETDFAIVNSCMNQLNETG 325
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
FMSNRGRQ+ S L+ ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DP R
Sbjct: 326 FMSNRGRQLVASCLIHELGLDWRRGAAYFETQLIDYDVTSNWGNWQYLAGVGADPNPSRR 385
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F++ KQA+ YD + + W
Sbjct: 386 FNLAKQAELYDPDSSFTRRW 405
>gi|148980022|ref|ZP_01815843.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
gi|145961465|gb|EDK26769.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
Length = 447
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 233/466 (50%), Gaps = 58/466 (12%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPK---TGALRA 136
K + + F NDLR+ DN L +A S++V + CV +TY + GA R
Sbjct: 2 KKIGLYLFTNDLRINDNTLLHRA---SQLVDELLCVAIEPKLSTYSVRLSQEQHNGAHRH 58
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
F+ + + DL NL G L + E + L KS +A +E +L
Sbjct: 59 LFIKQAINDLALNLARLGQRLFVLERNKSEDLVQLVKSQQVTHFFASSHCAHDE---RQL 115
Query: 197 VRKNLQQ---VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
++ L Q + +S Q + TT++ D PF+ + LP +T FR +E
Sbjct: 116 IKDTLTQCPDLFISQQHH--------------TTLFESDAFPFELTKLPRSFTKFRLQVE 161
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWG-SVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
+ + + + P P + P++E + S +VGGE+A L +
Sbjct: 162 -RLEINTNESVVAYLPPAPQTATYPYREPILE------SEASDIGDYVGGETAGLIHLES 214
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
YF D YK+TRN + G + STKFSPWLA G +SP+ IY +K +E R ANDSTYW
Sbjct: 215 YF-SNDYAGTYKQTRNALDGIENSTKFSPWLALGCVSPKTIYRHLKQFEAHRGANDSTYW 273
Query: 373 VLFELMWRDYFRFISLKYGNSLF-----HLGGPRKLEYKWSQDQKLFESWRDGCTGYPLI 427
+ FEL+WR+YF + L G SLF L + L+ + F W+ G T YP++
Sbjct: 274 IYFELLWREYFYWKCLTLGTSLFGRASNDLSNEQLLD---TNTGASFARWKSGNTNYPIV 330
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L+ TG+MSNRGRQ+ S L+ ++GIDWR GA +FE+ L+DYD SN+GNW Y A
Sbjct: 331 DACMRQLNATGYMSNRGRQLVASCLIHELGIDWRHGAAYFESQLIDYDVASNWGNWAYIA 390
Query: 488 GVGN--DPR-------------EDRYFSIPKQAQNYDREGEYVAYW 518
G N P+ + R+F + KQ + YD E ++ W
Sbjct: 391 GALNPQAPQNANKQSVAHQSQFKSRHFDLVKQTEMYDPEHAFINKW 436
>gi|333906605|ref|YP_004480191.1| DASH family cryptochrome [Marinomonas posidonica IVIA-Po-181]
gi|333476611|gb|AEF53272.1| cryptochrome, DASH family [Marinomonas posidonica IVIA-Po-181]
Length = 439
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 151/437 (34%), Positives = 230/437 (52%), Gaps = 23/437 (5%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ +VWF NDLR D + L +A + ++ +YC +P H++ + + R QFL +
Sbjct: 3 MGLVWFGNDLRCTDQQMLWRAAQEVDQLICLYCDEPEHTRPS-RYATQGMSDNRRQFLYQ 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L + L + G L + + L +Y E R
Sbjct: 62 GLDSLAQQLDSLGHPLFVSQLDAINSLTLLLNELPISHIYMNHRAGWNEQESLR------ 115
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
L+SQ +D + + G +++ +PF+ + LPD ++ FR+ I +
Sbjct: 116 ---HLTSQFSDV-----RFHIDHGQSLFEAWRLPFNITELPDTFSKFRRQITSLNITEP- 166
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+PS P V S+ I+ ++ P ++ + F GGE AA ++ YF +L +
Sbjct: 167 --LPSILQLPLPVH--CSLTQIQAWQIR-PVTTESL-FTGGEKAAQQQLKYYF-NSNLPR 219
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK+ RN + G + STKFS WLA GS+SP+ + + YE E+ AN+ST W+ FEL+WR+
Sbjct: 220 HYKQVRNALAGWENSTKFSAWLAQGSLSPKQVIAALTKYEAEQGANESTDWIYFELLWRE 279
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF + + +G +LF + G + S + F W G T YPL++A MK+L+ TG+MS
Sbjct: 280 YFHWYATCHGRALFTVNGLTATAHHLSFYPERFRKWCRGNTPYPLVNACMKQLNQTGYMS 339
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQIA S L+ ++GIDWR GA +FE L+DYD SN+GNW Y AGVG DPR R+F +
Sbjct: 340 NRGRQIAASCLIYELGIDWRYGAAYFEEQLIDYDVGSNWGNWQYIAGVGADPRGGRHFDL 399
Query: 502 PKQAQNYDREGEYVAYW 518
KQ Q YD ++ W
Sbjct: 400 EKQTQLYDPNHAFIDQW 416
>gi|326793764|ref|YP_004311584.1| DASH family cryptochrome [Marinomonas mediterranea MMB-1]
gi|326544528|gb|ADZ89748.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1]
Length = 458
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 152/451 (33%), Positives = 223/451 (49%), Gaps = 40/451 (8%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDP-----------RHSQT--TYHFG 127
+ I+WF +DLR+ DN L +A + ++ +YC P R S T T+
Sbjct: 2 SMGIIWFGDDLRINDNSLLYQASREVDRLICLYCSSPDDNNVDNSDPIRSSNTPSTFDNT 61
Query: 128 FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETC 187
K R F DL +L L + I L + +Y
Sbjct: 62 SIKPSEHRTLFRHMGALDLDHSLRRLHNKLWVSSKNASATIEFLVSKYPITHIYRHHHAG 121
Query: 188 SEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTH 247
E ++ + ++ +G T++ +PF + LP+ +T
Sbjct: 122 INEATTLTKLQARYTDIRWITE--------------YGLTLFSRHALPFSLNELPESFTK 167
Query: 248 FRK---SIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGES 304
FRK +I+ T++ R+P PP ++ P ++ L H+ G FVGGES
Sbjct: 168 FRKLVETIDVPKTIKAVDRLP-----PPVAIN---SPYVKTLP-HTSFALDGSPFVGGES 218
Query: 305 AALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERER 364
A + +YF YKETRN M STKFSPWLA G+ISPR + + YE
Sbjct: 219 YAHAHLADYF-SSGAASTYKETRNTMDDWMSSTKFSPWLAQGAISPRQVMNSLAFYESRM 277
Query: 365 VANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGY 424
+NDSTYW+ FEL+WR+YF++ S+KYG LF G S + F W G T +
Sbjct: 278 GSNDSTYWIYFELLWREYFQWYSMKYGARLFSKSGIHNKTLNSSFYAERFRKWCAGSTPF 337
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
P+++A MK+L+ TG++SNR RQ+A S L+ D+ IDWR GA +FE+ L+D+D SN+GNW
Sbjct: 338 PIVNAAMKQLNTTGYISNRARQLAASSLIYDLEIDWRYGATYFESQLIDFDVASNWGNWQ 397
Query: 485 YGAGVGNDPREDRYFSIPKQAQNYDREGEYV 515
Y AGVG DPR R+F++ KQ Q YD + ++
Sbjct: 398 YIAGVGADPRGGRHFNLDKQTQLYDPDKAFI 428
>gi|384501095|gb|EIE91586.1| hypothetical protein RO3G_16297 [Rhizopus delemar RA 99-880]
Length = 434
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/404 (35%), Positives = 208/404 (51%), Gaps = 39/404 (9%)
Query: 122 TTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVY 181
TT++F + R +F+IE + L K L R NLLI GKPE ++ L++ +
Sbjct: 19 TTWNFHIERCANYRTRFVIESVMALEKELQKRKSNLLILFGKPERLLKELSEFLKKNDCE 78
Query: 182 AQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWG--------TTMYHLDD 233
+ +E++ + R + + + ++ +L IW TTM H DD
Sbjct: 79 IHQIHTHKEVSRTLMKRNTRKSHFMKKYAYEELVVEKELTKIWNKTIAFHHDTTMIHPDD 138
Query: 234 IPFDHSSLPDVYTHFRKSIEAKCT-VRGCIRIPSSFGPPPSVV------DWGSVPLIEQL 286
+ F P VY HFR+ IE VR ++IP P ++ + G L E
Sbjct: 139 VDFTFEQTPKVYAHFRRRIEKMNQPVRPLLQIPDELPAFPDIIWKFPQSEQGKDLLEELY 198
Query: 287 ELHSPKVSKGMRFV--GGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLA 344
E + + + F GGE AA R+ Y +K D YK+TRN M+G +YSTKFS +L+
Sbjct: 199 EAFAFEKDERSAFPWPGGEDAARKRLENYLFKTDGAINYKQTRNGMIGTEYSTKFSAYLS 258
Query: 345 SGSISPRYIYEEVKSYERERVAN------DSTYWVLFELMWRDYFRFISLKYGNSLFHLG 398
G +SPR I+ E+ + ++ + D YW+ FEL+WRD+FRF+ GN +FHL
Sbjct: 259 HGCLSPRLIWHELNRLQSQKKIDKTGGDEDGIYWIRFELLWRDFFRFLVAGSGNRVFHLH 318
Query: 399 GPRKLEYK----------------WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
G R + K W + F W+ G TG P IDA+M+EL TGF++N
Sbjct: 319 GFRDMSNKEAQEDLKKKNSYSNKVWKSNNDQFNKWKVGQTGMPYIDASMRELINTGFLNN 378
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
RGRQ S++ +D+ +DWR+GAEWFE+ L D+D SNYGNW YG
Sbjct: 379 RGRQNVASYIAKDLELDWRIGAEWFESLLKDHDVYSNYGNWQYG 422
>gi|444425344|ref|ZP_21220786.1| deoxyribodipyrimidine photolyase [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444241341|gb|ELU52866.1| deoxyribodipyrimidine photolyase [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 398
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/388 (36%), Positives = 205/388 (52%), Gaps = 26/388 (6%)
Query: 132 GALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEEL 191
G+ + QFL E L L +L L + P + I + G +Y SEE
Sbjct: 3 GSAKRQFLDESLHCLNLSLNAFDQRLQVVDLHPYQAIKHAVEMLGVTHLYCDAFPGSEEQ 62
Query: 192 NVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
+V +R+ + + + Q ++ ++D+PF LPD +T FRK
Sbjct: 63 DVVDHIRQESEHLTICQQEV--------------RSLLTVEDLPFALEDLPDTFTKFRKK 108
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQL-ELHSPKVSKGMRFVGGESAALGRV 310
E + + F +V ++PL L L + K F GGE A L
Sbjct: 109 AEN-------VSLKEPFA---TVTALPTIPLGLALPTLRLIRDVKPCLFTGGEQAGLEHA 158
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
YF L YK+TRN + G DYSTKFSPWLA G +SP+ IY +K YER + AN+ST
Sbjct: 159 RRYF-SSTLASEYKQTRNGLDGMDYSTKFSPWLAHGCLSPKTIYAMLKRYERLKGANEST 217
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW+ FEL+WR+YF + + ++ LF GG + S F+ W+ G T +P+++A
Sbjct: 218 YWIYFELLWREYFYWYARRHKRQLFRFGGIQNQAPLTSFYAHRFQQWKKGETPFPIVNAC 277
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M +L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FE+ L+DYD SN+GNW Y AGVG
Sbjct: 278 MHQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVG 337
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYW 518
DPR R F++ KQ + YD E++ W
Sbjct: 338 ADPRGSRQFNLEKQTEMYDPHMEFIDRW 365
>gi|417949759|ref|ZP_12592890.1| deoxyribodipyrimidine photolyase [Vibrio splendidus ATCC 33789]
gi|342807637|gb|EGU42819.1| deoxyribodipyrimidine photolyase [Vibrio splendidus ATCC 33789]
Length = 452
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 159/461 (34%), Positives = 227/461 (49%), Gaps = 48/461 (10%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPK-TGALRAQF 138
K + + F NDLR+ DN L KA S + +L V V+PR S + + GA R F
Sbjct: 2 KKIGLYLFTNDLRINDNTLLYKASQSVDELLCV-AVEPRLSTYSVRLSQEQENGAHRHLF 60
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
+ + + DL +L G L + E + L KS +A +E +LV
Sbjct: 61 IKQAIDDLALSLARLGQRLFVLERNTSEDLVQLVKSQQVTHFFASSHCAHDE---RQLVI 117
Query: 199 KNLQQ---VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
L Q + +S Q + TT++ D PF+ + LP +T FR +E
Sbjct: 118 DTLTQCPDLFISQQHH--------------TTLFESDAFPFELTKLPRSFTKFRLQVE-Y 162
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+ + +S P P I +L SK ++GGE+ L + YF
Sbjct: 163 LEIEIEESVITSLPPAPQTATECYRKPIPEL-----NDSKPGDYIGGETVGLIHLENYF- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
D YK+TRN + G + STKFSPWLA G +SP+ IY +K +E R ANDSTYW+ F
Sbjct: 217 SNDYAGTYKQTRNALDGIENSTKFSPWLALGCVSPKTIYRHLKQFEAHRGANDSTYWIYF 276
Query: 376 ELMWRDYFRFISLKYGNSLF---HLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+YF + L G SLF G P + + F W+ G T YP++DA M+
Sbjct: 277 ELLWREYFYWKCLTLGTSLFGRESSGLPNEHSLDTTSGSS-FAKWKSGNTNYPIVDACMR 335
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN- 491
+L+ TG+MSNRGRQ+ S L+ ++GIDWR GA +FE+ L+DYD SN+GNW Y AG N
Sbjct: 336 QLNATGYMSNRGRQLVASCLIHELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALNP 395
Query: 492 --------------DPREDRYFSIPKQAQNYDREGEYVAYW 518
+ R+F + KQ + YD E ++ W
Sbjct: 396 QAPQNANKQSVSHQSQLKSRHFDLVKQTEMYDPEHAFINKW 436
>gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
Length = 435
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/437 (33%), Positives = 227/437 (51%), Gaps = 28/437 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A++WFR+DLR+ DN ALL+A + E +L +YC++PR ++ + G +F+ E
Sbjct: 4 ALLWFRHDLRLDDNPALLRAAQAKEALLCLYCIEPRWF-VADNWQSRRVGDHPWRFISES 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DL L G L+IR G P +IP L ++ + K C+ E + Q
Sbjct: 63 LLDLANRLEALGQQLVIRIGDPNTLIPGLMRNH-----WIDKLICTAPFGEE----ERRQ 113
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ L + + +W + T++ L+ +PF LP ++ FR+ ++
Sbjct: 114 YLALKQEVGEHRCE------VWQSHTLFTLEQLPFALDELPPTFSQFRRRVQ-------- 159
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
R+ PP V + + ++ GG++AA + Y K
Sbjct: 160 -RLEWRPLYPP-VTELPKPLALTSETPPPVSTPPNPQYQGGQTAAEAHLAHYL-AGAAPK 216
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK+TRN + STK SPWLA G +S R ++++YE + AN+ST W+ EL+WR+
Sbjct: 217 HYKQTRNALDDWSSSTKLSPWLAQGCLSARTAVAQLEAYEAQHGANESTEWIQVELLWRE 276
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
YF++++L +G+ LF G + + F W G T YP+++A M +L+ TGF+S
Sbjct: 277 YFQWLALAHGHRLFAFTGTSGVRRPCCFYPERFARWCQGQTPYPIVNAAMNQLNATGFLS 336
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NR RQ+ S LV ++G+DWR GA +F+ L+D+D NYGNW Y AGVG DPR R+F +
Sbjct: 337 NRARQLVASALVHELGLDWRYGAAYFQQQLIDHDVACNYGNWQYLAGVGADPRGWRHFDL 396
Query: 502 PKQAQNYDREGEYVAYW 518
KQ YD +G +V W
Sbjct: 397 DKQTALYDPDGAFVRQW 413
>gi|260220872|emb|CBA28873.1| hypothetical protein Csp_A09310 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 468
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 161/468 (34%), Positives = 235/468 (50%), Gaps = 60/468 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I WFR+D+R+ DN A +A VL V P S +G P R + +
Sbjct: 24 IYWFRSDMRLQDNPAWTRACAMGRPVLAV-TFAPVLSAREAAWGIPGLSPSRKAWWAATV 82
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+LR+ L G++LL+ G E + L ++ GA A+ C E + ++
Sbjct: 83 QELRRELDALGVSLLVLRGGSMEALVRLFEASGAVAL-----VCEE-------IAAPYER 130
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE-AKCTVRGCI 262
LSS H +W T++ +D+PF + LP V+T FR +E AK R +
Sbjct: 131 AQLSSLRASGIVVHS----VWQGTLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFRTPL 186
Query: 263 RIPS------------SFGP--------------PPSVVDW--GSVPLIEQLELHSPKVS 294
P SF P S W GS +++ LH +V
Sbjct: 187 PAPVNVTGYDLACDAVSFAEDFVDGAAAGKFVADPRSAFQWRSGSSGANDEV-LHLDEVL 245
Query: 295 KGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY 354
G GG A L +++ + + YK TRN + G YS+K+SPWLA G++S +
Sbjct: 246 AGS---GGGHAYL----QHYLESGRVAQYKATRNGLTGMAYSSKWSPWLALGAVSAPELM 298
Query: 355 EEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ----D 410
+K++ERE D +YW+ FEL+WRDYFR++ L+YG L+ G LE S+
Sbjct: 299 AALKAHEREHGTTDGSYWLWFELLWRDYFRWLHLQYGAGLYRPKG--LLEAAKSERVPHH 356
Query: 411 QKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETC 470
++ F W G TG L+DA M+EL+ +G++SNR RQ+ SFL+ ++G DWR GA WFE+
Sbjct: 357 RRSFTLWTQGRTGCDLVDAGMRELACSGYLSNRMRQVVASFLIYELGCDWRAGAAWFESQ 416
Query: 471 LLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
LLD+D SN GNW Y AG+G DPR R F++ KQ ++D +G Y A W
Sbjct: 417 LLDFDVYSNQGNWLYIAGLGTDPRGGRRFNVAKQTADHDPDGAYRALW 464
>gi|172058092|ref|YP_001814552.1| DASH family cryptochrome [Exiguobacterium sibiricum 255-15]
gi|171990613|gb|ACB61535.1| cryptochrome, DASH family [Exiguobacterium sibiricum 255-15]
Length = 400
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 154/441 (34%), Positives = 220/441 (49%), Gaps = 52/441 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+VW+R DLRV D+EAL +A + ++V V+ + G + F E
Sbjct: 2 AGVVWYRKDLRVDDHEALTRACEEEKIVRAVFVRQTADGR----------GKQQMTFEEE 51
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L ++L+ G+ L I G+ E + S + VY + T E E+ V+K
Sbjct: 52 TLQSLNEHLVQLGIELTILQGETVEQLTSFIQP--EDVVYFHRMTGEYEARQEQEVQKRF 109
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ +Q T++ DDI D L V+T FRK +E
Sbjct: 110 NTRMYETQ-----------------TLHLRDDIGSDE--LKRVFTAFRKRVEQDGRFAEP 150
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLEL---HSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
I P G++ IE + + P+ + F+GGE+A R+ Y +
Sbjct: 151 IEAP------------GNIQYIELPQTRGGYDPRTA--FPFIGGEAAGRNRLAAYL--EQ 194
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
+ YKETRN D S+K S WLA+GS+SPR + E++ E+E AN+STYW+ FEL+
Sbjct: 195 PIFTYKETRN-GFNVDDSSKLSAWLANGSLSPRRVMAELQRTEQEHGANESTYWLYFELL 253
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRD+F + G+ LF G + W DQ +SW G TG P +DA M+E+ TG
Sbjct: 254 WRDFFHLTMRETGHRLFRSNGLKDGRLTWKTDQAAIDSWMAGETGEPFVDAFMREIKDTG 313
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQI S+L+ D+ DWR+GA +FE L+DYD SNYGNW Y AGVGN R R
Sbjct: 314 WMSNRGRQITASYLIHDLKQDWRIGARYFEQQLIDYDVASNYGNWAYIAGVGNATRTPR- 372
Query: 499 FSIPKQAQNYDREGEYVAYWL 519
F+ Q Q YD ++ W+
Sbjct: 373 FNPEFQQQKYDPNRAFIRRWM 393
>gi|410665733|ref|YP_006918104.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
gi|409028090|gb|AFV00375.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
Length = 433
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 148/437 (33%), Positives = 224/437 (51%), Gaps = 30/437 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V++ WF NDLR+ DN AL +A ++ ++ +Y +DPR + P G R FL++
Sbjct: 4 VSLHWFINDLRLADNPALCRA-AMADRLICLYVIDPRWFRPGRQ-QLPSMGEKRRTFLLQ 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LADL + L G LL+ G PE +IP L + + + + + E +
Sbjct: 62 SLADLDRRLRALGQQLLVLEGHPESLIPELVRRYRVNRLTVNEVCTVNEYRTLASIDNAC 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+V+ + + ++ ++ Y H P ++ FRK +E R
Sbjct: 122 HALVVDTFAGNQLL----------SSRYR------GHREFPLGFSQFRKQVE-PLECRPI 164
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ P S P +P + + L SP F GGE+ A ++ + F L +
Sbjct: 165 MAAPPSLPATP-------LPRTQPVSLASPGSGA---FAGGETFAQVQLGKVF-DGMLPR 213
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YK R+ + D STK SPWLA G ISP ++ + ++ +S+YWV FEL+WR+
Sbjct: 214 RYKSNRDALDQWDGSTKLSPWLALGCISPVQVWWRLLHWQDTHGFCESSYWVGFELLWRE 273
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+F ++ + G +LF GG R S F++W +G T PL++A MK+L +GF+S
Sbjct: 274 FFHHLAREQGTTLFRFGGMRNKRPLTSFYPSRFKAWCEGSTPEPLVNAIMKQLRCSGFIS 333
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NR RQIA S+LV ++ +DWR GA WFE L+DYD N+GNW Y AGVG DPR R F++
Sbjct: 334 NRARQIAASYLVNELAVDWRYGAAWFEYQLIDYDAAVNWGNWQYIAGVGVDPRGGRRFNM 393
Query: 502 PKQAQNYDREGEYVAYW 518
Q +D +GEYVA W
Sbjct: 394 DIQRARFDPDGEYVARW 410
>gi|392574250|gb|EIW67387.1| hypothetical protein TREMEDRAFT_33591 [Tremella mesenterica DSM
1558]
Length = 661
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 165/490 (33%), Positives = 238/490 (48%), Gaps = 105/490 (21%)
Query: 128 FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA----HAVYAQ 183
F +T R +FL+E + LR G +LLI +G+P+ ++P L + V+AQ
Sbjct: 101 FHRTSPYRLRFLLESIFYLRDTYRRSGGDLLIGYGRPDRLLPVLIEKLKETSEIEGVWAQ 160
Query: 184 KETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPD 243
E EE ++ + LQ++ + D T + + D+PFD PD
Sbjct: 161 DEVTVEEKDMLDNLEVALQKIGVKMNKVDSKT------------LVAIKDLPFDRRQTPD 208
Query: 244 VYTHFRKSIEAKCTV---------------RGCIRIP---SSFGPPPSVVDWGSVP---- 281
VYT FRK+ E +G I+I P P + ++ ++P
Sbjct: 209 VYTAFRKNCEGLGLSLGGMLKQPLRTSHLSQGNIKIDIDGQRLKPAPQM-EFSTLPEGCG 267
Query: 282 --------------LIEQLELHSPKV------------------SKGMRFVGGESAALGR 309
L++ L L +P V S + F GGE AAL R
Sbjct: 268 VLGKDTSVVEIYTKLVKPL-LDTPPVGGWSQAAKDNNALPVFHPSSAVPFEGGEKAALER 326
Query: 310 VNEYFWKKD--------LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV---- 357
+++Y +D K YK TRN M+G +STKFS WL+ G +S R I V
Sbjct: 327 LDDYVGHEDGKGWTGGGKAKQYKATRNGMIGEGFSTKFSCWLSLGCLSAREIGWRVGGLL 386
Query: 358 -KSYERERVANDSTYWVLFELMWRDYFRFISLKY----GNSLFHLGG------------- 399
K +++ ++ YW++FEL+WRD+F+ KY +SLF G
Sbjct: 387 EKVDRKDKDTYNNVYWIIFELLWRDFFQSTVYKYFFSSKSSLFLPKGFSEQINTYPRSQR 446
Query: 400 --PRKLEY-KWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDM 456
P++ Y W + W +G TG P +DAN++EL TG+MSNRGRQ SFLV+D+
Sbjct: 447 PNPQEWHYPNWENEDDPARRWCEGRTGVPFVDANLRELRETGWMSNRGRQNVASFLVKDL 506
Query: 457 GIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVA 516
+DWR+GAE+FE L+DYD CSN+GNW Y AGVGNDPR R F+ KQA++YD + +Y
Sbjct: 507 YVDWRVGAEFFEMHLVDYDTCSNWGNWQYQAGVGNDPRSSRQFNPLKQAKDYDPKNDYTK 566
Query: 517 YWLPQLKALP 526
WL +LK LP
Sbjct: 567 LWLSELKVLP 576
>gi|149188415|ref|ZP_01866708.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
gi|148837633|gb|EDL54577.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
Length = 472
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 154/447 (34%), Positives = 235/447 (52%), Gaps = 38/447 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT---GALRAQFL 139
I WF +DLR+ DN+ L KA SE V ++CV +T Y F + + +F
Sbjct: 32 GIYWFNHDLRLHDNKLLQKA---SEHVDRLHCVYFDELKTMYDRRFLPVEIDDSAKREFK 88
Query: 140 IECLADLRKNLMNRGLNL-LIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
++ L +L ++LM G L + +E + L + F +++ S ++ +V
Sbjct: 89 MQALGELNQSLMQLGQVLHQVSVTSLDEAVSQLEQMFDYYSITDLYVANSASWYIDYVVT 148
Query: 199 KNL---QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
K L +VL + +++H +PFD LP +T F+ +E+
Sbjct: 149 KALLKRTDIVLHRDDTE--------------SLFHQTLLPFDLEDLPHSFTRFKNKMES- 193
Query: 256 CTVRGCIRIPS----SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
I +PS + P + + +P E S K+ +R GGE A LG V
Sbjct: 194 ------IVVPSPSQTTTQLPRPMNNRDGLPASYGCEPSSLKLHSSVR--GGELAGLGHVR 245
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
+YF + L YK TRNE+ STKFS WLA+G++SPR + ++ +E++ +N+STY
Sbjct: 246 DYFATQAALS-YKSTRNELDNWSSSTKFSLWLANGNVSPRAVVNQLHRFEQKHGSNESTY 304
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
W+LFEL+WR+YF + S KYG LF GG + + W +G T +P+++A M
Sbjct: 305 WILFELLWREYFHWYSHKYGAKLFAFGGIQDKRPLTTFYASRLRQWVEGNTPFPIVNACM 364
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+L TG+MSNRGRQ+ S LV ++ +DWR GA +F+ L+DYD SN+GNW Y AGVG
Sbjct: 365 NQLRETGYMSNRGRQLVASCLVHELSLDWRYGACYFQHMLIDYDVGSNWGNWQYLAGVGA 424
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYW 518
DPR +R F + KQ+Q YD E ++ W
Sbjct: 425 DPRGNRKFDLDKQSQLYDPESVFIRKW 451
>gi|229918425|ref|YP_002887071.1| DASH family cryptochrome [Exiguobacterium sp. AT1b]
gi|229469854|gb|ACQ71626.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b]
Length = 404
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/438 (34%), Positives = 228/438 (52%), Gaps = 37/438 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
I+W++NDLRV D+ L +A + + + + P +G G R +FL E
Sbjct: 3 TIIWYQNDLRVDDHLPLEEALHHDDPIEGHFFISPNQFIEN-RYGVIPLGNERLRFLKES 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEII-PSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L D+ +L G+ + G P E + PS F Y ++ +E + + K
Sbjct: 62 LEDVSGSLDALGIPFYVHVGHPLETLDPSDRLLFQRAVGYNERRRENEVMKRWKGTYKTF 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ G T++ +D PF+ +P ++T FRK++E R
Sbjct: 122 E----------------------GFTLFEKEDNPFE--KMPFLFTEFRKAVEYDVRPREL 157
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
I ++ + + P Q P+ + F GGE AA R+N+Y ++
Sbjct: 158 ISRKAT-----AATREVTFPFSIQEVKQDPRTA--FPFKGGELAAKRRLNDYL--SVPIR 208
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
YKETRN G D STK S +LA+GS+SPR ++ E++++ER N+STYW+ FEL+WR+
Sbjct: 209 TYKETRN-GFGVDDSTKLSAYLANGSLSPRRVFFELEAHERTHGVNESTYWLYFELLWRE 267
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+F++++L G LF G R W D + E+WR G TG +DA M+EL+ TG+MS
Sbjct: 268 FFQWVALDQGKKLFRSQGIRSKRKDWRVDPDVVETWRRGETGVDFVDAFMRELNATGWMS 327
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGRQI ++ +++ DWR GA +FE+ L+DYD SN+GNW Y AGVGND R DR F+I
Sbjct: 328 NRGRQIVANYFAKELKQDWRYGASYFESKLIDYDVASNWGNWAYQAGVGNDSR-DRRFNI 386
Query: 502 PKQAQNYDREGEYVAYWL 519
+Q YD + + WL
Sbjct: 387 ERQQFTYDPDRAFRNKWL 404
>gi|407072254|ref|ZP_11103092.1| deoxyribodipyrimidine photolyase [Vibrio cyclitrophicus ZF14]
Length = 495
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 149/437 (34%), Positives = 229/437 (52%), Gaps = 42/437 (9%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT---GALRA 136
K + + F NDLR DNE L KA S +V + CV + + + F K GA RA
Sbjct: 2 KKIGLYLFTNDLRADDNELLGKA---SRLVDELICVVIEPNLSVFSRKFAKEQQYGAERA 58
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKP---EEI-----IPSLAKSFGAHAVYAQKETCS 188
+F+ + + DL L N G L++ EE+ + + KS A ++
Sbjct: 59 KFISQSITDLESRLANLGQELIVLRSSTLTDEEMSRDFALSEIIKSQQATHLFVSHHCGF 118
Query: 189 EELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF 248
+E ++ + ++ N +++L Q + +T+ L+ +PF+ S LP +T F
Sbjct: 119 DERHLVQSIQFNFPKLILMQQHH--------------STLLELEQLPFELSKLPRSFTKF 164
Query: 249 RKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIE--QLELHSPKVSK----GMR---F 299
RK +E + I ++ P P + + + H +S G+ F
Sbjct: 165 RKLVEHLPIDTQSLSI-TTLPPMPKALSHCHSKQASNSKFDEHCLNISNTNVNGLHNSSF 223
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
+GGE A L +++YF YK+TRN G + STKFSPWLA G +SP+ IY +
Sbjct: 224 IGGEQAGLAHLHDYF-SHPYAHQYKQTRNAFDGKENSTKFSPWLALGCVSPKTIYRNLVQ 282
Query: 360 YERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR---KLEYKWSQDQKLFES 416
+E + +NDSTYW+ FEL+WR+YF + L G+SLF G + Q+ F +
Sbjct: 283 FEAKHGSNDSTYWIFFELLWREYFYWKCLSLGSSLFQNGTDNPSIDSVLATNTTQQNFAN 342
Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDP 476
W+ G TGYP++DA M++L+ TG++SNRGRQ+A S L+ ++G+DWR GA +FE+ L+DYD
Sbjct: 343 WKCGNTGYPIVDACMRQLNTTGYVSNRGRQLAASCLIYELGVDWRNGAAYFESQLVDYDV 402
Query: 477 CSNYGNWTYGAGVGNDP 493
SN+GNW Y AG N P
Sbjct: 403 ASNWGNWAYIAGDLNQP 419
>gi|452822894|gb|EME29909.1| photolyase/blue-light receptor [Galdieria sulphuraria]
Length = 444
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 188/338 (55%), Gaps = 32/338 (9%)
Query: 65 ETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTY 124
E FG +A K G + IVWFRNDLR+ DN AL +A + ++LPVYC DPR T
Sbjct: 102 ENFGESAGQAYK--GSKI-IVWFRNDLRLHDNPALFRAAEEGSLILPVYCFDPRQFGKT- 157
Query: 125 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184
FGF KTG RAQFLI+ + DLRK+ +G +L++R G+PEE++P L + G V+ +
Sbjct: 158 SFGFEKTGRYRAQFLIDSVEDLRKSFRAKGSDLIVRLGRPEEVLPELCRQTGCKRVFCHR 217
Query: 185 ETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDV 244
E E+L VE V L+ + + ++ L+W T+Y +D+PF ++PD+
Sbjct: 218 EVTYEDLIVEEDVGDALESIGV------------EMTLLWSNTLYQAEDLPFQVENMPDI 265
Query: 245 YTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHS----------PKVS 294
YT FR+S+E +R + + +F PP + G +P + +L L + P+
Sbjct: 266 YTKFRESVETGGKIREPLELSEAF-PPRPRCEPGEIPTLTELGLDASPERIPGESNPRSI 324
Query: 295 KGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY 354
G R GGES +L R+ +Y + ++ T LG D+S K SPWLA G ISPR IY
Sbjct: 325 HGFR--GGESESLKRMEDYLSEMRSTEISSTTAGAYLGADFSCKISPWLALGCISPRKIY 382
Query: 355 EEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGN 392
EV +TY FEL+WRD+FRFI+ KYGN
Sbjct: 383 HEVNGSSVPEDVRKTTY---FELVWRDFFRFITQKYGN 417
>gi|399543313|ref|YP_006556621.1| Cryptochrome DASH [Marinobacter sp. BSs20148]
gi|399158645|gb|AFP29208.1| Cryptochrome DASH [Marinobacter sp. BSs20148]
Length = 393
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/393 (35%), Positives = 209/393 (53%), Gaps = 28/393 (7%)
Query: 132 GALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEEL 191
G R +FL + L L ++L G L I G PE +IP+LA + ++ + E
Sbjct: 2 GHHRWRFLWQSLIGLERSLRAMGQRLHIAWGDPETVIPALALGHAISRIVRSRQPGTREA 61
Query: 192 NVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
+ ++ L ++ T + L L + +P LP ++ FRK
Sbjct: 62 VQWQTLQDKLPKIAF--------TQYETLGL------FTESLLPMPLQDLPATFSQFRKL 107
Query: 252 IEAKCTVRGC--IRIPS--SFGPPPSVVD--WGSVPLIEQLELHSPKVSKGMRFVGGESA 305
IE K RG +RIP+ P P + D G P I++ ++ F GGE A
Sbjct: 108 IEKKGD-RGPARLRIPTVKMLPPAPGLPDDNRGECPAIQE-------PTQPSAFSGGEQA 159
Query: 306 ALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV 365
L R+ ++ + YKETRN + + S+KFSPWLA G +S R I + + YE++
Sbjct: 160 GLARLRDFLAGTHAIDTYKETRNALDDWNSSSKFSPWLAHGCLSAREIADSISLYEQQHT 219
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYP 425
+N+STYW+ FE++WR+YF + +L++G+ LF G + + F++W +G T YP
Sbjct: 220 SNESTYWLWFEVLWREYFYWYALRHGSELFRRDGVQGKRQSVTFYGHRFKAWCEGNTSYP 279
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
L++A M +L TG++SNR RQ+ S + ++ +DWR GA WFE L+DYD SNYGNW Y
Sbjct: 280 LVNAAMNQLRETGYISNRSRQVVASCFINELELDWRYGAAWFEQQLIDYDVASNYGNWQY 339
Query: 486 GAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
AGVG DPR R F++ KQAQ YD G +V W
Sbjct: 340 LAGVGADPRGLRRFNLDKQAQQYDPNGTFVDRW 372
>gi|342875294|gb|EGU77092.1| hypothetical protein FOXB_12390 [Fusarium oxysporum Fo5176]
Length = 730
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 174/528 (32%), Positives = 248/528 (46%), Gaps = 88/528 (16%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSE---MVLPVYCVDPRHSQTTYHFG-------- 127
G + + R DLR +DN L S +LP+Y + P +T+
Sbjct: 3 GNKLLVYLLRRDLRAIDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVAEGQKSPYP 62
Query: 128 --------FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA 179
F + G +RA+F E + D+++NL + +L+R G + ++ L KS
Sbjct: 63 EARSQVGRFWRCGPVRAKFQAESIWDVKQNLEDIHSGMLVRIGNFDNVLKHLIKSLHDEH 122
Query: 180 VYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF--- 236
+EE++ E + +N V S N+ KL W Y++DD
Sbjct: 123 QSVDTVWMTEEVSKEEVDDQNAVASVCSE-------NNINFKL-WQDEKYYIDDRDTGLD 174
Query: 237 DHSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWG-------SVP------- 281
D LPDV+T FRK+ E + R + P + PP W +P
Sbjct: 175 DPKELPDVFTTFRKTQEPLRERPRASLPRPQAGSLPPFPSSWAPPQEPPFQIPDNYNDFE 234
Query: 282 ---------LIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLG 332
+++ + F GGE+ A R+ + K + Y+ETRN +LG
Sbjct: 235 QRLLEPINSMVQDPPAYPDDARSAHPFKGGENPAWDRLY-HLIKSGSMTTYQETRNGLLG 293
Query: 333 PDYSTKFSPWLASGSISPRYIYEEV--------KSYERE----RVANDSTYWVLFELMWR 380
DYSTK S +LA GSIS R I+EE+ +SY R + N+ T V FEL+WR
Sbjct: 294 TDYSTKLSAYLALGSISARSIHEELVKFENGQEQSYSRAIGFGQGENEGTKAVRFELLWR 353
Query: 381 DYFRFISLKYGNSLFHL----GGPRKLEYKW----------SQD------QKLFESWRDG 420
DY R ++K+G+ LF L G K + KW QD ++ E + G
Sbjct: 354 DYMRLCTMKFGSRLFKLDGFKGASGKYDKKWKTALKEKADVDQDPSPEELSEIIERFLRG 413
Query: 421 CTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNY 480
TG LIDA+ +EL TG+ SNR RQ SF + +GIDWR GAEW+E L+DYD SN+
Sbjct: 414 TTGMGLIDASQRELYHTGYTSNRARQNVASFFAKHLGIDWRYGAEWYEAMLVDYDVSSNW 473
Query: 481 GNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
NW Y AGVGNDPR D R F+ KQA +YD G YV W+P++K + K
Sbjct: 474 ANWQYVAGVGNDPRGDARIFNPIKQAFDYDNNGRYVRTWVPEVKYIEK 521
>gi|407477769|ref|YP_006791646.1| Cryptochrome DASH [Exiguobacterium antarcticum B7]
gi|407061848|gb|AFS71038.1| Cryptochrome DASH [Exiguobacterium antarcticum B7]
Length = 400
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 155/441 (35%), Positives = 214/441 (48%), Gaps = 52/441 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
IVW+R DLRV D+EAL +A + V ++ ++ H F + E
Sbjct: 2 AGIVWYRKDLRVDDHEALSRACSEQQTVRALFIQREIETRGHQHVTFER----------E 51
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L LR +L G+ L I G E + + +Y + T E +E+ V +
Sbjct: 52 TLQSLRDHLGQLGIELTILQGGAMEQLSRFIEP--EDVLYFHRMTGFYEERLEQEVLRQF 109
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ +Q T++ +DI D L V+T FRK +E
Sbjct: 110 TACMYETQ-----------------TLHLREDIGSD--ELKRVFTAFRKRVEESGRFAEP 150
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLE---LHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
I P G V +E E + P S F GGE+A R+ EY +
Sbjct: 151 IDAP------------GEVRYVEPQEARAMDHPHTS--FPFAGGEAAGRARLTEYLERP- 195
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
+ YKETRN D S+K S WLA+GS+SPR + E++ ER AN+STYW+ FEL+
Sbjct: 196 -VFTYKETRN-GFDRDDSSKLSAWLANGSLSPRRVMAELQRTERLHGANESTYWLYFELL 253
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRD+F + G+ LF G R W DQ ++W G TG P +DA M+E+ TG
Sbjct: 254 WRDFFHLTMRETGHRLFRSNGLRDGHLTWKTDQSAVDAWMAGRTGQPFVDAFMREIRETG 313
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQI S+L+ D+ DWR+GA +FE L+DYD SNYGNW Y AGVGN R R
Sbjct: 314 WMSNRGRQITASYLIHDLKQDWRIGARYFEQQLIDYDVASNYGNWAYIAGVGNATRTPR- 372
Query: 499 FSIPKQAQNYDREGEYVAYWL 519
F+ Q Q YD G ++ W+
Sbjct: 373 FNPEFQQQKYDPTGAFIRRWM 393
>gi|384082237|ref|ZP_09993412.1| deoxyribodipyrimidine photo-lyase type I [gamma proteobacterium
HIMB30]
Length = 429
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 151/448 (33%), Positives = 221/448 (49%), Gaps = 37/448 (8%)
Query: 84 IVWF-RNDLRVLDNEALLKAW----DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQF 138
++W R+ RV+DN AL A + V+P+ C++PR FG P+TG A+F
Sbjct: 6 VIWLVRDSCRVVDNPALNLATQIANERDAFVIPLACLEPRR-WADQQFGMPRTGTHWARF 64
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
E L LR +L+ RG L + +P + + S V + +EE RL
Sbjct: 65 RSESLKALRADLIARGSGLWVSAEEPVYALNRINPSVNVIKVVCDRPLATEE----RLEN 120
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC-- 256
++ ++D ++ + +PF+ LP ++ FRK +E K
Sbjct: 121 ARIEAEGYPVVTHDVDD------------LFRFEQLPFELDELPATFSKFRKIVEKKPGL 168
Query: 257 ----TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELH-SPKVSKGMRFVGGESAALGRVN 311
V P P P V+W IE + SP+ + GGE+ A N
Sbjct: 169 APDPPVEMHELTPCMEQPWPDPVEW-----IETFDNQLSPRAE--VETYGGETQAQRHWN 221
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
Y L YK+TRN GP S+ S WLA G +S R I+ + +YE AN+STY
Sbjct: 222 TYL-DAKALSHYKQTRNAFCGPMQSSHLSAWLAHGCLSARKIWSDTLAYEAREGANESTY 280
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
W+ FEL+WR+YFR+ + +LF GP + + F W+ G T ++DA M
Sbjct: 281 WLRFELLWREYFRWYARASDWTLFRRTGPNDKDVSGDHNSTRFAGWKTGHTNCDIVDAAM 340
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL+ TG+MSNR RQ+ S L+ ++ +DWR+GA +FE+ L+DYD SN+GNW Y AGVG
Sbjct: 341 RELNETGWMSNRARQLVASHLIYELNLDWRLGAAYFESQLIDYDVASNWGNWAYIAGVGP 400
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWL 519
DPR R F++ QA YD + Y WL
Sbjct: 401 DPRGGRIFNLNDQADRYDSDQSYRRRWL 428
>gi|374686520|emb|CCF55053.1| DASH-cryptochrome [Fusarium fujikuroi]
Length = 714
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 174/526 (33%), Positives = 247/526 (46%), Gaps = 88/526 (16%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSE---MVLPVYCVDPRHSQTTYHFG-------- 127
G + + R DLR +DN L S +LP+Y + P +T+
Sbjct: 3 GNKLLVYLLRRDLRAIDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVAEGKKSPYP 62
Query: 128 --------FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA 179
F + G +RA+F E + D+++NL + +L+R G + ++ L KS
Sbjct: 63 EARSQVGRFWRCGPVRAKFQAESIWDVKQNLEDISSGMLVRVGNFDNVLKHLIKSLHDEH 122
Query: 180 VYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF--- 236
+EE++ E + +N V S N+ KL W Y++DD
Sbjct: 123 QSVDTVWMTEEVSKEEVDDQNAVASVCSE-------NNINFKL-WQDEKYYIDDRDTGLD 174
Query: 237 DHSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWG-------SVP------- 281
D LPDV+T FRK+ E + R + P + PP W +P
Sbjct: 175 DPKELPDVFTTFRKTQEPLRERPRASLPRPQAGSLPPFPSSWALPQEPPFQIPDNYNDFE 234
Query: 282 --LIEQLELHSPK-------VSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLG 332
L+E + P F GGE+ A R+ + K + Y+ETRN +LG
Sbjct: 235 QRLLEPINSMVPDPPVYPEDARSAHPFKGGENPAWDRL-YHLIKSGSMTTYQETRNGLLG 293
Query: 333 PDYSTKFSPWLASGSISPRYIYEEVKSYERERV------------ANDSTYWVLFELMWR 380
DYSTK S +LA GSIS R I+EE+ +E + N+ T V FEL+WR
Sbjct: 294 IDYSTKLSAYLALGSISARCIHEELVKFEDGQEQSYSKAIGFGQGENEGTKAVRFELLWR 353
Query: 381 DYFRFISLKYGNSLFHL----GGPRKLEYKW----------SQD------QKLFESWRDG 420
DY R ++K+G+ LF L G K + KW +QD + E + G
Sbjct: 354 DYMRLCTMKFGSRLFKLDGFKGASGKYDKKWKTALKEEADANQDPSPEELSDIIERFLRG 413
Query: 421 CTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNY 480
TG LIDA+ +EL TG+ SNR RQ SF + +GIDWR GAEW+E L+DYD SN+
Sbjct: 414 TTGMGLIDASQRELYHTGYTSNRARQNVASFFTKHLGIDWRYGAEWYEAMLVDYDVSSNW 473
Query: 481 GNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
NW Y AGVGNDPR D R F+ KQA +YD G+YV W+P++K +
Sbjct: 474 ANWQYVAGVGNDPRGDARIFNPIKQAFDYDNNGKYVRTWVPEVKYI 519
>gi|388851718|emb|CCF54714.1| related to Deoxyribodipyrimidine photo-lyase [Ustilago hordei]
Length = 896
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/256 (46%), Positives = 162/256 (63%), Gaps = 31/256 (12%)
Query: 301 GGESAALGRVNEYF----------WKK---DLLKVYKETRNEMLGPDYSTKFSPWLASGS 347
GGES+AL R++ YF W K + YK+TRN ++G YS+K SP+LA GS
Sbjct: 332 GGESSALDRLDWYFVRGKSADSSRWGKADPPPVARYKQTRNNLIGHAYSSKMSPFLAYGS 391
Query: 348 ISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKW 407
ISPR I+E + +E + + +TYWV FEL+WRDYF F++ K+G+ ++ LGG +
Sbjct: 392 ISPRQIWEALDDHETKFGEDQNTYWVRFELLWRDYFFFVAEKFGHLVYDLGGFERATDPR 451
Query: 408 SQDQKLFESW-------RDGC-----------TGYPLIDANMKELSMTGFMSNRGRQIAC 449
+K+ E W +DG TG P +DAN+ EL +GFMSNRGRQ
Sbjct: 452 QAAKKMEEGWWRKWEPIKDGAEHEMTRLLEGRTGIPFVDANIIELRESGFMSNRGRQNVA 511
Query: 450 SFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYD 509
SFL +D+G DWR+GAE+F++ L+DYDP SNYGNW Y AGVGNDPR R F+I KQA++YD
Sbjct: 512 SFLSKDLGYDWRIGAEFFQSHLIDYDPTSNYGNWQYVAGVGNDPRASRQFNIIKQAKDYD 571
Query: 510 REGEYVAYWLPQLKAL 525
G+YV W+P L+ L
Sbjct: 572 SHGDYVKMWIPALRNL 587
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 33/184 (17%)
Query: 90 DLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT--------------TYHFGFPKTGALR 135
DL L+NEALL + +++ +LPV+ D R + T +GF KTG R
Sbjct: 65 DLSKLENEALLGS--TADYLLPVFVFDEREMELSGLPGFQRKGPEARTKVYGFWKTGGFR 122
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF---GAH--AVYAQKETCSEE 190
+F+ E + D+R L N G +LLIR G PE++I +L ++F G H V+ QKE E
Sbjct: 123 TRFISESVYDVRSRLRNVGSDLLIRFGIPEDVIYNLVQAFQADGTHVEGVWMQKEMTYPE 182
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 250
+NVE + + LQ + + ++G T+ H D+PFD S PDV+T FRK
Sbjct: 183 INVENAIVEKLQGSSVP------------FRFVYGKTLIHPSDLPFDSSETPDVFTPFRK 230
Query: 251 SIEA 254
+EA
Sbjct: 231 KVEA 234
>gi|392549764|ref|ZP_10296901.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas spongiae
UST010723-006]
Length = 452
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 144/441 (32%), Positives = 225/441 (51%), Gaps = 23/441 (5%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ WF +DLR+ DN AL A +SE + VY +DP ++ ++ G + +F++ L
Sbjct: 5 LYWFTHDLRLSDNSALEYALKNSEQIAFVYVLDPS-TKIANNYHSQLLGDHQTRFILNAL 63
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L L G L++ G + + + + + ++ V ++ L +
Sbjct: 64 QELADELQALGHQLIVLEGAAQSEVSEFIREHDINQLVVAEQ-------VGEFEKRKLAE 116
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK-CTVRGCI 262
+ QS N Q W T++ I + ++ FR +E K TV
Sbjct: 117 L----QSTHSKVNFTQF---WQHTLFSQHQIA-TLDCMSGSFSKFRNKVEKKPLTVSAPT 168
Query: 263 RIPSSFGP---PPSVVDWGSVPLIEQLELHSPKVS--KGMRFVGGESAALGRVNEYFWKK 317
+ S P P ++ + L+ E + + M F GE A + Y
Sbjct: 169 SLESPLTPEHWPKAIKVDNNCALLAWFERYGGAYTMPNEMPFFAGEHAGKYHLVSYL-NS 227
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
K YKETRNE+ G STKFSP+LA G++SPR I+ V YE+ AN+STYW+ FEL
Sbjct: 228 GAAKTYKETRNELDGWHNSTKFSPYLAIGNLSPRQIWHAVLQYEQSDGANESTYWIKFEL 287
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR+YF+++S++ L+ G + S + ++ W G T YPL++A MK+L+ T
Sbjct: 288 LWREYFQWLSVRLVERLYTFSGLSDTKPLTSFFAERYQKWCSGNTPYPLVNALMKQLNAT 347
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQIA S V ++ +DWR GA +F+ L+D+D SN+GNW Y AGVG DP R
Sbjct: 348 GYMSNRGRQIAASCFVNELQLDWRYGAAYFQQQLIDFDVASNWGNWQYIAGVGVDPHGGR 407
Query: 498 YFSIPKQAQNYDREGEYVAYW 518
+F+I KQ + +D G ++ W
Sbjct: 408 HFNIEKQTELFDANGVFIRKW 428
>gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
Length = 425
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 144/432 (33%), Positives = 224/432 (51%), Gaps = 34/432 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V ++WFRNDLR DNE L + S +++PVYC DPR+ G KTG RA+F+++
Sbjct: 5 VTLIWFRNDLRFHDNEILFETVSKSPIIIPVYCFDPRYFSKKSS-GHRKTGVHRARFILD 63
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ +L++ + G +L+ G PEEIIP LA + + V+ +E S E ++ +N+
Sbjct: 64 AVRELKEKFVAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRE----TIISENV 119
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + + N LK G T+YH +D+PF +P+ + F+K IE + TVR
Sbjct: 120 ETALWKLKIN--------LKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVRQP 171
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG----MRFVGGESAALGRVNEYFWKK 317
P P + + ++P +E+L + ++ + GGE AL +V E
Sbjct: 172 FPTPEVMVTHPHL-EKTTIPTLEELGYTTEEIQTANNNPIHLRGGEDEALKKVEE----- 225
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS-TYWVLFE 376
V NE L DY SP++A+G++SP Y+Y ++K + + V N T + +
Sbjct: 226 ----VLSGQFNEQL--DYMM-LSPYIAAGALSPIYLYHKIK--DAKLVLNKKRTEKLTAQ 276
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYK-WSQDQKLFESWRDGCTGYPLIDANMKELS 435
L+WRDYFRF+ KY N F G K EY + + + W+ G TGY ID M+ LS
Sbjct: 277 LLWRDYFRFMLKKYPNVFFKKNGTGKSEYSNVETNPEDLKKWQSGQTGYEFIDKAMQFLS 336
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG + + ++I F V++ DWR GA +FE L+DY P + YG W + AGVG +
Sbjct: 337 QTGNLPSDIKKIVSLFFVQEYQGDWRKGASYFEDMLIDYAPATTYGYWAHYAGVGTSIKN 396
Query: 496 DRYFSIPKQAQN 507
+ S Q +N
Sbjct: 397 NTPASWEVQMKN 408
>gi|154305828|ref|XP_001553315.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10]
Length = 651
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 170/524 (32%), Positives = 243/524 (46%), Gaps = 89/524 (16%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVY-----------------CVDPRHS 120
+ I R DLRV DN L D+ + +LP+Y C P
Sbjct: 6 ILIYLMRRDLRVGDNPVLHSLVDNKDHGFTHLLPLYVFAAQQIEVSGFITTDGCKSPYPE 65
Query: 121 QTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAV 180
+ F + G RA+FL E + DL+ L L IR G +E++ L + F
Sbjct: 66 ARSQIGAFWRCGPHRAKFLAESVWDLKGGLEKIESGLAIRVGMVDEVVKDLIEGF----- 120
Query: 181 YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKL-IWGTTMYHLDD--IPF- 236
++T +++ + + + +S +K + + +W Y +DD IPF
Sbjct: 121 ---QKTGGSKVSAVWMTSEEGVEEKREERSTEKICDKAGVDFQLWQDEKYLIDDRDIPFK 177
Query: 237 DHSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVD------------------- 276
D LPDVYT +RKS+E + R + P PP D
Sbjct: 178 DPKDLPDVYTTYRKSVEPLREAPRPALPKPEKNSLPPFPTDVPTQHSPFAIPTNYEEIES 237
Query: 277 -----WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEML 331
+ PLI+ + F GGES A R+ E+ + YK +RN ++
Sbjct: 238 ALLKPINAQPLIKNPPSYPENSLSVHPFTGGESHAQERL-EHLITSGSINAYKSSRNGLM 296
Query: 332 GPDYSTKFSPWLASGSISPRYIYEEVKSYERE--------------RVANDSTYWVLFEL 377
G D+STK S +LA GSI+ R I+ + +E + N+ TY V FEL
Sbjct: 297 GTDFSTKLSAYLALGSITSRQIHSSMSIFENGSDSDNRYKDLEGYGKGENEGTYGVRFEL 356
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLE---YKWS------------QDQKLFESWRDGCT 422
+WRDY R + K+G LF LGG + E KWS Q Q++ E + +G T
Sbjct: 357 LWRDYMRLCTRKFGPKLFQLGGFKDEENAHSKWSRLDSPRDGVSKEQIQEIIERFLNGTT 416
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
G IDA+ +E TG+ SNR RQ SFL + + IDWR+GAEW+E L+DYD SN+GN
Sbjct: 417 GMGFIDASQRECYHTGYTSNRARQNVASFLAKHLYIDWRIGAEWYECMLVDYDVSSNWGN 476
Query: 483 WTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
W Y AGVGNDPR DR F+ KQA +YD + EYV W+ +L+ +
Sbjct: 477 WQYVAGVGNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGV 520
>gi|88798414|ref|ZP_01113999.1| Deoxyribodipyrimidine photolyase [Reinekea blandensis MED297]
gi|88778854|gb|EAR10044.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
Length = 433
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 228/442 (51%), Gaps = 23/442 (5%)
Query: 85 VWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLA 144
+WF D R+ DN AL A ++ EM L V+ V+ Q+ + +P+ G R FL L+
Sbjct: 1 MWFTQDQRLDDNPALRLAAEADEM-LCVFVVEQGWFQSR-RYQYPQMGPHRWVFLQLSLS 58
Query: 145 DLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQV 204
+L + L G LL+ +G+ E I L + + + V + ++EL R + +
Sbjct: 59 ELNQRLQLHGQRLLVVYGQAEVEIGRLVERYDINRVVRARSPGTDELRQWRWLESQFPET 118
Query: 205 VLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRI 264
T++ D + S P ++ FR+ E R +
Sbjct: 119 EWCQAD--------------AATLFEDDQVAGLSRSWPMSFSAFRRLAE-----RWVVPA 159
Query: 265 PSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYK 324
++ P+ + L L + + S M F GGES AL ++ Y D + YK
Sbjct: 160 VTAMPQLPNTITQQISQLTLPDWLPNARASHSM-FDGGESEALRHLDCYL-ASDYPQTYK 217
Query: 325 ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFR 384
RN + D S+K SPWL +G++S R + +++ Y+++ A+D T+W+ EL+WR+YF+
Sbjct: 218 RDRNAIDDWDSSSKMSPWLNAGNLSARRLKQKLDEYDQQHGASDGTHWLFVELLWREYFQ 277
Query: 385 FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRG 444
+++ G LFH G + + S F +WR+G T + +++A M++L TG++SNRG
Sbjct: 278 WLAQSIGTKLFHFQGLSEHKPLTSFYSDRFRNWREGNTPWAIVNACMRQLKETGYLSNRG 337
Query: 445 RQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQ 504
RQIA S LV ++ +DWR GA WFE CL+DYD SN+GNW Y AGVG D R R+F+I KQ
Sbjct: 338 RQIAASALVNELALDWRYGAAWFEYCLVDYDVASNWGNWQYIAGVGTDSRGGRHFNIDKQ 397
Query: 505 AQNYDREGEYVAYWLPQLKALP 526
+ +D +G + A W + P
Sbjct: 398 TELFDADGSFRARWAADAEPQP 419
>gi|378731024|gb|EHY57483.1| deoxyribodipyrimidine photo-lyase [Exophiala dermatitidis
NIH/UT8656]
Length = 669
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 169/524 (32%), Positives = 246/524 (46%), Gaps = 83/524 (15%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM-------VLPVYCVDPRHSQTTYHFGFPKT--- 131
V + R DLR+ DN + S+ VLP+Y + + +T+ P++
Sbjct: 6 VLVYLLRRDLRLCDNPVFYEIHKLSKQASPPFTHVLPIYVIPAQQVETSGFLPDPESISP 65
Query: 132 --------------GALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA 177
G RA FL E + L+++L G LLIR G+ +I A
Sbjct: 66 FPEARSEVGKFWRCGPHRAVFLAESVWSLKQDLERVGSGLLIRVGQLGQI---------A 116
Query: 178 HAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKL---IWGTTMYHLDD- 233
V+ Q T + + V + + + V + + + + +W Y +DD
Sbjct: 117 QDVFDQFRTQASDAIVSAVWMTSEEGVEEKREEREVRKAAQKAGVEFKLWLDEKYFIDDR 176
Query: 234 -IPFDH-SSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVD-------------- 276
+P S LPDV+T +RKS E + R + P S PS +
Sbjct: 177 DVPLKKPSDLPDVFTAYRKSAEPLREAPRKPVSTPPSLPALPSFLPSQPAPFAIPDSFEG 236
Query: 277 --------WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRN 328
+ PL+ P V F GG L R+ ++ K+ ++ YK+TRN
Sbjct: 237 MKSALLKPLNNQPLLADPPAFPPGVKSAHPFRGGSQEGLHRI-QHLLKQGVMTRYKDTRN 295
Query: 329 EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE------------RVANDSTYWVLFE 376
+LG D+STK S WLA G I+ R ++ + YE + N T V FE
Sbjct: 296 GLLGTDFSTKLSAWLALGCITARQVHARLVDYEEGYDDQYQGTEGYGKGENAGTAAVRFE 355
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRK-LEYKW---SQDQK---LFESWRDGCTGYPLIDA 429
L+WRDY R + K+G LF + G R Y W QD K +F+ + G TG LIDA
Sbjct: 356 LLWRDYMRLCTRKFGPRLFKVQGFRNDTSYSWKTPDQDSKVAAMFQRFLRGTTGTGLIDA 415
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
+ +EL +TG+ SNR RQ S+L + +GIDWR+GAEW+E L DYD +N+GNW Y AGV
Sbjct: 416 SQRELYLTGYTSNRARQNVASYLAKHLGIDWRLGAEWYEANLADYDVSNNWGNWQYVAGV 475
Query: 490 GNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNF 532
GNDPR E R F+ KQA +YD +GEY W+ +L+AL + + F
Sbjct: 476 GNDPRGEARVFNPVKQAFDYDPQGEYCKAWVEELRALHEPQEIF 519
>gi|389746080|gb|EIM87260.1| cryptochrome [Stereum hirsutum FP-91666 SS1]
Length = 641
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 178/533 (33%), Positives = 253/533 (47%), Gaps = 103/533 (19%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSE----MVLPVYCV------------DPRHSQTTYH 125
+ I R DLR+ DN L S +LP+Y P +
Sbjct: 6 ILIYMLRRDLRLADNPILHHISTSRSPQYTHLLPLYIFPHNQLEVSGSVKSPFPEARSQV 65
Query: 126 FGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF----GAH--A 179
GF + G RA+FL E L D+++ L +G L+IR GK E++ L H
Sbjct: 66 AGFWRCGPHRAKFLAESLWDVKEGLEGKGSGLVIRVGKVGEVVRGLIDVIMENEAGHVVG 125
Query: 180 VYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD--IPFD 237
V+ E EE E V+K + V + Q +W Y +DD +PFD
Sbjct: 126 VWMTGEEGQEEQREESDVKKVCEGVGVEFQ-------------LWRDEKYLIDDRDLPFD 172
Query: 238 H-SSLPDVYTHFRKSIE-----AKCTVRGC------------------IRIPSSFGPPPS 273
+ LPDV+T FRKS+E ++ T+ IP+S
Sbjct: 173 NIKDLPDVFTSFRKSVEPLNSRSRHTLPTPNSLPLLPPSSLIAPQAYPFTIPTSLS---Q 229
Query: 274 VVDWGSVPLIEQLELHSPK--------VSKGMRFVGGESAALGRVNEYFWKKDLLKVYKE 325
+++ PLI + + P ++ G F GG + R+ ++ + YK+
Sbjct: 230 LIEALYKPLIAKPDHAMPDPTSTPPHPITSGHPFTGGATTGHSRI-KHLITSSAMTNYKQ 288
Query: 326 TRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE------------RVANDSTYWV 373
TRN +LG DYSTK S WLA G I+ R ++E + E + N+ T WV
Sbjct: 289 TRNGLLGEDYSTKLSAWLALGCITARQVHEYLVKLEEGSDELGKNAKGWGKGINEGTGWV 348
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE--YKW----SQDQKLFESWR---DGCTGY 424
FEL+WRDY R + K+ + LF LGG R W S D + ++ R +G TG
Sbjct: 349 RFELLWRDYMRLCARKFNSRLFSLGGFRGSNNISGWKSPSSSDPAVQDTIRRFLEGTTGM 408
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRD--MGIDWRMGAEWFETCLLDYDPCSNYGN 482
L+DA+ +EL++TG+ SNR RQ SFL + IDWR+GAEW+E L+DYD CSN+GN
Sbjct: 409 GLVDASQRELALTGYTSNRARQNVASFLTHKSHLYIDWRVGAEWYECMLVDYDVCSNWGN 468
Query: 483 WTYGAGVGNDPR-------EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
W Y AGVGNDPR E R F+ KQA++YD +GEY+ W+P+L+ L E
Sbjct: 469 WQYVAGVGNDPRANGQDAGEGRAFNPVKQAKDYDPKGEYIKAWIPELRGLRGE 521
>gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 425
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 143/432 (33%), Positives = 224/432 (51%), Gaps = 34/432 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V ++WFRNDLR DNE L + S +++PVYC DPR+ G KTG RA+F+++
Sbjct: 5 VTLIWFRNDLRFHDNEILFETVSKSPIIIPVYCFDPRYFSKKSS-GHRKTGVHRARFILD 63
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ +L++ G +L+ G PEEIIP LA + + V+ +E S E ++ +N+
Sbjct: 64 AVRELKEKFAAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRE----TIISENV 119
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + + N LK G T+YH +D+PF +P+ + F+K IE + TVR
Sbjct: 120 ETALWKLKIN--------LKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVRQP 171
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG----MRFVGGESAALGRVNEYFWKK 317
P P + + ++P +E+L + ++ + GGE AL +V E
Sbjct: 172 FPTPEVMVTHPHL-EKTTIPTLEELGYTAEEIQTANNNPIHLRGGEDEALKKVEE----- 225
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS-TYWVLFE 376
V NE L DY SP++A+G++SP Y+Y ++K + + V N T + +
Sbjct: 226 ----VLSGQFNEQL--DYMM-LSPYIAAGALSPIYLYHKIK--DAKLVLNKKRTEKLTAQ 276
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ-DQKLFESWRDGCTGYPLIDANMKELS 435
L+WRDYFRF+ KY N F G K EY + + + + W+ G TG+ ID M+ LS
Sbjct: 277 LLWRDYFRFMLKKYPNVFFKKNGTGKNEYSNTDTNPEDLKKWQSGQTGHVFIDKAMQFLS 336
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG + + ++I F V++ DWR GA +FE L+DY P + YG W + AGVG +
Sbjct: 337 QTGNLPSDLKKIVSLFFVQEYQGDWRKGASYFEDILIDYAPATTYGYWAHYAGVGTSIKN 396
Query: 496 DRYFSIPKQAQN 507
+ S Q +N
Sbjct: 397 NTPASWEVQMKN 408
>gi|407924950|gb|EKG17973.1| Cryptochrome/DNA photolyase class 1 [Macrophomina phaseolina MS6]
Length = 654
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 172/536 (32%), Positives = 249/536 (46%), Gaps = 95/536 (17%)
Query: 82 VAIVWFRNDLRVLDNEALLK-----AWDSSEM--VLPVYCVDPRH----------SQTTY 124
+ I R DLR+ DN +SS VLPVY + +Q+ Y
Sbjct: 8 ILIYLLRRDLRLSDNPVFHHLSQQCGSNSSSFTHVLPVYVIPANQVEVSGFLRPGTQSPY 67
Query: 125 H------FGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH 178
GF + G RA+FL E + DL+ +L G +L+IR G +++ + +G +
Sbjct: 68 PEARSQVAGFWRCGPHRAKFLAESVWDLKTSLGKIGSDLIIRVGMVGDVLQDMLSWYGKN 127
Query: 179 AVYAQKETCSEELNVER---LVRKNLQQVVLSSQSNDKSTNHPQLKL-IWGTTMYHLDD- 233
+T E + + + + ++ + ++L +W Y +DD
Sbjct: 128 PDIPNGDTDGEGKGTIAGIWMTAEEGVEEQREERDARRAADASGVELKLWADEKYFVDDR 187
Query: 234 -IPF-DHSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFG--PPPSVVDWGSVPLIEQLEL 288
+PF D LPDVYT FRKS+E + R +P S PP S + + P L
Sbjct: 188 DLPFTDIKDLPDVYTTFRKSLEPLRERPRPTTSMPKSLPSLPPASSIPPQAGPFTSPESL 247
Query: 289 HS------------------PKVSKGMR----FVGGESAALGRVNEYFWKKDLLKVYKET 326
S P+ G + F GGE+AA RV+ + YKET
Sbjct: 248 SSMIDSLHKPIDLAMAMENPPQWPSGAKSAHPFEGGETAAQNRVSHLIASGSMAN-YKET 306
Query: 327 RNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE---------------RVANDSTY 371
RN +LG DYSTK S WLA G ++ R ++ + +YE + N T
Sbjct: 307 RNGLLGEDYSTKLSSWLALGCVTARQVHASLAAYEDGSPNAPDSWKAAPGYGQGENAGTA 366
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-----------KWS------------ 408
V FEL+WRDY R + K+G LF++ G R E +W
Sbjct: 367 AVRFELLWRDYMRLCTRKFGPRLFNVDGFRSGEKQVENPAEGGKKRWRYLDRSSGVGDDP 426
Query: 409 -QDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWF 467
+ ++ E +R G TG LIDA+ +EL +TG+ SNR RQ SFL +GIDWR+GAEW+
Sbjct: 427 VKTKQAIERFRAGRTGVGLIDASQRELFLTGYTSNRARQNVASFLASHLGIDWRVGAEWY 486
Query: 468 ETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
E L DYD +N+GNW Y AGVGNDPR+ R F+ KQA +YD+ G Y+ W+ +L+
Sbjct: 487 ECALTDYDLSNNWGNWQYVAGVGNDPRQGRKFNPVKQALDYDKGGAYIKTWVQELR 542
>gi|417321887|ref|ZP_12108421.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
gi|328470041|gb|EGF40952.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
Length = 338
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/292 (42%), Positives = 165/292 (56%), Gaps = 10/292 (3%)
Query: 227 TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQL 286
+++ +PF LP+ +T F K +E + I PS P P +P
Sbjct: 29 SLFDESKLPFTLPDLPETFTQFGKCVEG-IDIAHPIDAPSRLPPMPKDA---QLP----- 79
Query: 287 ELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASG 346
L S + F GGE + L YF L YKETRN + G YSTKFSPWLA G
Sbjct: 80 TLSSSCFDESALFSGGEWSGLAHCRRYF-SSGLASSYKETRNGLDGMAYSTKFSPWLALG 138
Query: 347 SISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK 406
+SPR IY +K YE+ + ANDST W+ FEL+WR+YF + + Y LF GG R
Sbjct: 139 CVSPRMIYAMLKQYEQTQGANDSTNWIYFELLWREYFYWYARCYQQRLFRFGGIRNQPPL 198
Query: 407 WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEW 466
S F+ W++G T Y +++A M +L+ TG+MSNRGRQ+ S LV ++G+DWR GA
Sbjct: 199 TSFYAHRFQQWKNGTTPYLIVNACMHQLNHTGYMSNRGRQLVASCLVHELGLDWRYGAAH 258
Query: 467 FETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
FET L+DYD SN+GNW Y AGVG DPR R F++ KQ Q YD E++ W
Sbjct: 259 FETQLIDYDVGSNWGNWQYLAGVGADPRGSRQFNLEKQTQMYDPNHEFIERW 310
>gi|451855995|gb|EMD69286.1| hypothetical protein COCSADRAFT_32031 [Cochliobolus sativus ND90Pr]
Length = 673
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 162/481 (33%), Positives = 239/481 (49%), Gaps = 81/481 (16%)
Query: 127 GFPKTGALRAQFLIECLADLRKNL--MNRGLNLLIRHGKPEEIIPSLAKSFGAH------ 178
G +TG RA+F+ + + +L+ L +N G L +R GK +++ + + +
Sbjct: 99 GVWRTGPHRAKFIADGVWNLKDKLAGLNCGSGLEMRVGKIPDVVSDILDWYDKNENEGII 158
Query: 179 -AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD--IP 235
V+ + +EE + ++K +Q + + +W Y++DD +P
Sbjct: 159 SGVWITDDDATEEKDDAASLKKITEQRGVDFK-------------VWVDEKYYVDDRDLP 205
Query: 236 F--DHSSLPDVYTHFRKSIEA-----KCTVRGCI-------RIPSSFGP--PPSVVDWGS 279
+ D S LP+VYT +RK +E + TV RIP P PS ++
Sbjct: 206 YYEDISKLPNVYTTYRKGLEPLRDRPRNTVPTPTQLPPLPSRIPPQKSPFTIPSTLEGLK 265
Query: 280 VPLIEQL------ELHSPKV-----SKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRN 328
L+ L L P V F GGE+ L R+ E+ + + YK TRN
Sbjct: 266 NALLTPLLKDPTYTLKVPPVWPTDAQSAHPFSGGEANGLDRI-EHLVRTGAMSSYKATRN 324
Query: 329 EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA-----------NDSTYWVLFEL 377
MLG D+STK S +LA G I+ R ++ + +E R N+ T V FEL
Sbjct: 325 GMLGLDFSTKISAYLAQGHITARQVHWAMFDFEEGRGPGEKVPGYGKGENEGTAAVRFEL 384
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLE----------YKWSQ--------DQKLFESWRD 419
+WRDY R K+G +F L G + ++ KWS+ ++FE +R
Sbjct: 385 LWRDYMRLCMRKFGYKMFSLYGIQTIDQKECDNKWKNLKWSKGPGDDPAKTAEVFERFRS 444
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TG LIDA+ +EL +TG+ SNR RQ SFL + IDWR+GAEW+E L+DYDP SN
Sbjct: 445 GRTGVGLIDASNRELFVTGYTSNRARQNVASFLSSHLNIDWRVGAEWYECFLVDYDPASN 504
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIE 539
+GNW Y AGVGNDPR+ R F+ KQA +YD+ GEY+ W+P+L+ L R PG I+
Sbjct: 505 WGNWQYVAGVGNDPRQGRIFNPVKQALDYDKHGEYIKAWVPELRGLKLTRSLGPGKEEID 564
Query: 540 Q 540
Q
Sbjct: 565 Q 565
>gi|407726057|dbj|BAM46126.1| cryptochrome DASH [Lentinula edodes]
gi|407955603|dbj|BAM48913.1| cryptochrome dash [Lentinula edodes]
Length = 622
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 171/553 (30%), Positives = 259/553 (46%), Gaps = 124/553 (22%)
Query: 84 IVWFRNDLRVLDNEAL--LKAWDSSEMVLPVYCVDPRHSQTTYHFGFPK----------- 130
I FR DLR+ DN L+ +LP+Y + P + + PK
Sbjct: 4 IYLFRRDLRISDNPIFHHLQKHPQFCHILPLYILPPNQIEVSGFLQDPKLESHYPQARSR 63
Query: 131 ------TGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAK----SFGAHAV 180
G RA+FL E + DL+++L +RG +L++R G+ E+++ + K AV
Sbjct: 64 LGKFWRCGPHRAKFLAESIWDLKESLKHRGSDLIVRVGRMEDVVGQILKRKEFQGKVGAV 123
Query: 181 YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF---D 237
+ K+ SEE+N E + + +++ + + K +W L+D F D
Sbjct: 124 WMTKDWASEEVNEELRIERAVKK---------EGDGKIEWK-VWDGEEMLLNDNDFSTSD 173
Query: 238 HSSLPDVYTHFRKSIEAKCTVRGCIRIP-----SSFGPPPSVVDWGSVPL---------- 282
+ +PDV+T FRKS E +R IR+P S+ P P V + P
Sbjct: 174 PAQVPDVFTSFRKSFEP---LRDNIRVPHCSTHSNLPPIPPKVPTQAAPFTIPTSLDDFI 230
Query: 283 ------IEQLELHSP-----KVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEML 331
++ L P S F+GGE++A R+ + L YK+TRN +L
Sbjct: 231 SSLQKPVQDCGLGPPILKPQGASTAHPFIGGETSAHERI-LHLLVSGSLSTYKDTRNGLL 289
Query: 332 GPDYSTKFSPWLASGSISPRYIYEEVKSYER-----------------------ERVAND 368
G D+STK S +LA G ++ R + ++E + N
Sbjct: 290 GEDFSTKLSAYLALGCVTARQANAYMVAFEDGKDLPDFGIRLNTEVNLANAKGFGKGENK 349
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLG---------GPRKLEYK-----------WS 408
T V FEL+WRDY R K+G+ LF + GP ++Y+ WS
Sbjct: 350 GTAAVRFELLWRDYMRLCMRKFGSELFSIEGFGERSRRRGPEDVQYRKNKPNSDISYHWS 409
Query: 409 -----QDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMG 463
+ + F+ + G TG LIDA+M+EL++TG+ SNR RQ SFL + +GIDWR+G
Sbjct: 410 NLSSPETRCAFDRFIRGETGTGLIDASMRELALTGYTSNRTRQNCASFLAKWLGIDWRLG 469
Query: 464 AEWFETCLLDYDPCSNYGNWTYGAGVGNDPR----------EDRYFSIPKQAQNYDREGE 513
AEW+E L+D+D +N+GNW Y AGVGNDPR E R F+ KQA +YDR G+
Sbjct: 470 AEWYECMLIDHDVANNWGNWAYVAGVGNDPRGRDASGGGGTEGRKFNPVKQAWDYDRNGD 529
Query: 514 YVAYWLPQLKALP 526
YV W+ + + +P
Sbjct: 530 YVKAWIAEFEGVP 542
>gi|449015791|dbj|BAM79193.1| probable photolyase/blue-light receptor [Cyanidioschyzon merolae
strain 10D]
Length = 438
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 176/331 (53%), Gaps = 28/331 (8%)
Query: 77 RNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRA 136
+NG G ++WFR+DLR+ DN AL A + VLPVYC DPR T FGF KTG RA
Sbjct: 97 KNG-GTVLLWFRSDLRLDDNPALCAALEEGASVLPVYCFDPRQFGKT-SFGFEKTGRYRA 154
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+FLIE +ADLRK L +G NLLIR GKPEE+IP L + + V+ +E EEL E
Sbjct: 155 KFLIESVADLRKALKKKGNNLLIRIGKPEEVIPDLCRKYEIKKVFYHQEVTYEELECEEA 214
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ + K HP W T+Y ++D+PF PDVYT +R ++E+K
Sbjct: 215 VARKLEDM--------KVEVHP----FWTNTLYAVEDLPFPVEETPDVYTEYRLAVESKS 262
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLEL-HSPKV----------SKGMRFVGGESA 305
VR + P P V++G++P +E L L PK S F GGES
Sbjct: 263 RVRDPLAAPDEIRAIPRHVEYGTLPTLEDLGLGQVPKTPEYGSASTAGSSLHHFRGGESE 322
Query: 306 ALGRVNEYFW-KKDLLKVYKETRNEM--LGPDYSTKFSPWLASGSISPRYIYEEVKSYER 362
A R+ +Y K L V + LG D+S K SPWLA G +SPR I+ E++ +
Sbjct: 323 AQQRLAQYVQDAKHALSVGGDVERAAAHLGADFSCKISPWLALGCVSPRRIFAEIRDHAL 382
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNS 393
FEL+WRD+FR I+ KY S
Sbjct: 383 NGAEGAQKSTTFFELVWRDFFRLITYKYSTS 413
>gi|84385647|ref|ZP_00988678.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
gi|84379627|gb|EAP96479.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
Length = 462
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 236/473 (49%), Gaps = 48/473 (10%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQF 138
K + + F NDLR+ DN+ L A S + ++ V V+P + + ++ A R F
Sbjct: 2 KKIGLYLFTNDLRINDNQLLYYAAQSVDKLICV-IVEPTLVRFSADLAQEQSYSAHRQAF 60
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKET-------CSEEL 191
+ + +A+L NL+ G L++ + + P A+ +H + +Q T C +
Sbjct: 61 VSQSIANLESNLVKLGQQLVVI--RSNHLEPDTAEKTLSHIIVSQHVTHFFANAHCGYD- 117
Query: 192 NVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
ER + +++Q+ QS + P +T++ ++PF+ S +P +T FRK
Sbjct: 118 --ERQLIRSIQR-----QSPNLVMCLPH-----HSTLFDSHELPFELSKVPSSFTKFRKL 165
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
+E R I S PP + S I + + + GGE A L +
Sbjct: 166 VEHLDVNRNETVI--SALPPAVRLALTSTSTISLFSSPNDESVVISDYWGGEGAGLAHLE 223
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
YF D YK+TRN G + STKFSPWLA G +SP+ IY +K +E + NDSTY
Sbjct: 224 NYF-SHDYAFNYKQTRNVFDGIENSTKFSPWLALGCVSPKTIYCHLKQFEADHGINDSTY 282
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFE----SWRDGCTGYPLI 427
W+ FEL+WR+YF + L G+SLF G E S W+ G T YP++
Sbjct: 283 WIYFELLWREYFYWKCLSLGSSLF--GETSDHELNSSNSSATLNLNLAKWKSGNTNYPIV 340
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L+ TG+MSNRGRQ+A S L+ ++GIDWR GA +FE+ L+DYD SN+GNW Y A
Sbjct: 341 DACMRQLNTTGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIA 400
Query: 488 GV--------------GNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G N + + R+F + KQ YD + ++ W + K L
Sbjct: 401 GALRPQVSTQTNKQKNANQAQPKSRHFDLGKQTDMYDPDHAFINKWNVRSKEL 453
>gi|119945273|ref|YP_942953.1| DNA photolyase FAD-binding subunit [Psychromonas ingrahamii 37]
gi|119863877|gb|ABM03354.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Psychromonas ingrahamii 37]
Length = 448
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 151/444 (34%), Positives = 219/444 (49%), Gaps = 31/444 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ W DLR+ DN AL A S+ +L VY VD + S +F G +R QFL C
Sbjct: 4 TLYWVNKDLRINDNAALNLA-SKSDRLLCVYVVD-KQSFEANNFQSKPLGDIRWQFLQGC 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L D ++L G + I +G + L +S+ V K + E RL+
Sbjct: 62 LEDFNESLSKLGQAMHIVYGDTLSTLMRLCESYQITDVITTKLPGTYE---NRLI----- 113
Query: 203 QVVLSSQSNDKSTNHPQLKL--IWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT--- 257
+Q N++ P+L + + T++ +PF+ LP Y+ FRK +
Sbjct: 114 -----TQLNER---LPELTIDQVDQFTLFTKKSLPFELDELPISYSKFRKKMAEVIIPEP 165
Query: 258 VRGCIRIPSSFG--PPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
V +PS F P P+ +P + + K +G F GGE L + +YF
Sbjct: 166 VSTVQSLPSMFDTLPAPTRFKPEWLPTVSAI-----KAKQGFEFEGGEQQGLKHLRQYF- 219
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ YK+ RN + G S+K SPWL SG IS R + + +E++ N ST +
Sbjct: 220 SSNSPAEYKQVRNNLDGWKNSSKLSPWLNSGCISVRQVMNNLAEFEQQHGKNSSTECLYL 279
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WR+Y++++ K G + G K + + F W G T Y L++A M EL
Sbjct: 280 ELLWREYYQWVHYKVGAKTYQFKGLAKHRPLTTFYPERFNKWCLGNTPYSLVNAFMHELR 339
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG++SNRGRQI S LV ++ +DWR GA WFE L+DYD N+GNW Y AGVG DPR
Sbjct: 340 QTGYLSNRGRQIVASCLVNELSVDWRYGAAWFEEQLIDYDAAVNWGNWQYIAGVGVDPRG 399
Query: 496 DRYFSIPKQAQNYDREGEYVAYWL 519
R+F+I KQ YD G+Y A W+
Sbjct: 400 GRHFNIEKQTTLYDPNGDYQAQWI 423
>gi|383934347|ref|ZP_09987789.1| cryptochrome DASH [Rheinheimera nanhaiensis E407-8]
gi|383704803|dbj|GAB57880.1| cryptochrome DASH [Rheinheimera nanhaiensis E407-8]
Length = 429
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 152/452 (33%), Positives = 227/452 (50%), Gaps = 52/452 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+++V + +R+ DN LL+ +++ L V H+ +G + R Q +
Sbjct: 3 LSLVLLNDTMRLHDNP-LLQLPTAAKAALVVL---DHHAFFGAQYGIARANLSRLQQQLA 58
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV-ERLVRKN 200
+ +++ L + + L+ G + I LA+ A A+Y C+E + ER
Sbjct: 59 VITAVKQQLAAQHIGLITLVGNVAQRISELARELNATALY-----CAEPVAPNERQALLR 113
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L + +Q + S QL+ T LPD +T FRK +E V
Sbjct: 114 LSPGLAVTQLDCNSLLGHQLRPTLAT--------------LPDSFTPFRKQLEPLLQVSP 159
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQL-----ELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+ P PP W ++ E +L S ++ V E AL RV E+ W
Sbjct: 160 PLNTPL----PPQ--GWLTMSQCEPYNSAFNQLASQYQPNLLQSVASEQGALARVTEFIW 213
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ + YKETRN++LG Y++ S LA GS+S R +++++ +E++ ANDSTYW+ F
Sbjct: 214 QGRHILTYKETRNQLLGQHYASFCSAPLALGSLSVRQLWQDIVQFEQQVAANDSTYWLKF 273
Query: 376 ELMWRDYFRFISLKYGNSLFHLGG------------PRKLEYKWSQDQKLFESWRDGCTG 423
EL+WR+YFR+ KYGN F G P +L S+ Q F+ W G TG
Sbjct: 274 ELLWREYFRWQFRKYGNLWFSRNGIKQAIRQQPDFSPPRLS---SRQQDKFQRWCAGQTG 330
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
+DANM+ L+ TG MSNRGRQ S+L+ D+ +DWR+GA +FE LLDYD SN+GNW
Sbjct: 331 IDFVDANMQLLNKTGLMSNRGRQNVASYLIYDLALDWRLGAAYFEQRLLDYDCASNWGNW 390
Query: 484 TYGAGVGNDPREDRYFSIPKQAQNYDREGEYV 515
Y AG GN +R F+I KQAQ YD +G +V
Sbjct: 391 AYIAGTGNS--SERRFNISKQAQLYDADGRFV 420
>gi|310791128|gb|EFQ26657.1| DASH family cryptochrome [Glomerella graminicola M1.001]
Length = 705
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 178/530 (33%), Positives = 261/530 (49%), Gaps = 101/530 (19%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRH-----------SQTTY-- 124
+ I FR+DLR+ DN + +S+ VLP+Y V P H S++ Y
Sbjct: 6 ILIYLFRHDLRIADNPIIHHLSTASDHGFTHVLPIY-VFPAHQIEISGFLREGSKSPYPE 64
Query: 125 ---HFG-FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG---- 176
G F + G R +F+ + + +L+++L + L +R GK +++ L +SF
Sbjct: 65 ARSQIGKFWRCGPHRTKFVAQSVWNLKESLESVHSGLALRAGKFGDVVDDLLRSFADKKQ 124
Query: 177 -AHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD-- 233
AV+ E EE E+ V ++ ++ ++ W Y +DD
Sbjct: 125 KVGAVWMTAEESVEEKRDEKAVSAACEKHGVAFKT-------------WTDEKYFIDDRD 171
Query: 234 IPFDH-SSLPDVYTHFRKSIEA-KCTVRGCIRIP----------SSFGPP-------PSV 274
+ F+ S L DV+T FRK+ E + R + P S PP PS
Sbjct: 172 LHFESPSELADVFTAFRKTQEPLREKPRPTLPHPKKGSLPPYPDQSIIPPQRTPFQIPST 231
Query: 275 VDWGSVPLIEQL------ELHSPKVSKGMR-FVGGESAALGRVNEYFWKKDLLKVYKETR 327
D L++ L E P+ +K + F GGE A+ R+ E+ K + YK+TR
Sbjct: 232 YDALEAALLKPLKSPFNEEPKFPENAKSVHPFKGGEDFAIERL-EHLVKTGSVSSYKDTR 290
Query: 328 NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE------------RVANDSTYWVLF 375
NEMLG D+STK S +LA G ++ R I+E + YE + ND T V F
Sbjct: 291 NEMLGVDFSTKLSAYLALGCLTSRQIHEALVKYEDGQDDRFKETPGYGKGENDGTKAVRF 350
Query: 376 ELMWRDYFRFISLKYGNSLFHLGG------PR----KLEYKWSQD---------QKLFES 416
EL+WRDY R ++K+G LF + G P+ E+ S+D QK+ +
Sbjct: 351 ELLWRDYMRLCTMKFGAKLFCVTGFKNDTTPKWKSADPEHVVSEDNLGTPVDDVQKILQR 410
Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDP 476
+ +G TG LIDA+ +EL TG+ SNR RQ SFL + +GIDWR GAEW+E L+DYD
Sbjct: 411 FLNGTTGMGLIDASQRELYHTGYTSNRARQNVASFLTKHLGIDWRYGAEWYEYLLVDYDV 470
Query: 477 CSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
SN+ NW Y AGVGNDPR D R F+ KQA +YD+ GEYV W+ + + +
Sbjct: 471 NSNWSNWQYVAGVGNDPRGDNRIFNPVKQAFDYDKTGEYVKAWVVETREV 520
>gi|322694523|gb|EFY86350.1| Putative cryptochrome DASH [Metarhizium acridum CQMa 102]
Length = 702
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 171/524 (32%), Positives = 248/524 (47%), Gaps = 89/524 (16%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRH----------SQTTY----- 124
+ R DLRV DN L +S+ +LPVY + Q+ Y
Sbjct: 8 VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFSAQQVELSGFLKDGEQSPYPPAKS 67
Query: 125 HFG-FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQ 183
G F + G RA+F E + +L+++L G L+IR G ++++ L K
Sbjct: 68 QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVVDHLVKELKDAVPCVS 127
Query: 184 KETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSS--- 240
+EE + E + + + S Q + +W Y +DD S
Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSQQGIEFE--------LWKDEKYFVDDRDTGLESPAD 179
Query: 241 LPDVYTHFRKSIE-------------AKCTVRGCIR---IPSSFGP---PPSVVDWGS-- 279
LPDV+T +RKS E AK ++ IP+ P P S+ D
Sbjct: 180 LPDVFTTYRKSQEPLREKPRKVLPRPAKSSLPAFPEEESIPAQAHPFVSPVSLEDLQKRL 239
Query: 280 VPLIEQLELHSPK----VSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDY 335
V +E + + PK + G F GGE++ R+ + K + YK+TRN ++G DY
Sbjct: 240 VKPLEHIMDNPPKRPEDATDGHPFTGGETSGWARLR-HLGKSSAMTSYKDTRNGLVGVDY 298
Query: 336 STKFSPWLASGSISPRYIYEEVKSYE-------RERVA-----NDSTYWVLFELMWRDYF 383
S K S +L+ G ++ R I+EE+ E ++ V ND T + FEL+WRDY
Sbjct: 299 SLKLSAYLSLGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYM 358
Query: 384 RFISLKYGNSLFHLGG---PRKLEYKW----------------SQDQKLFESWRDGCTGY 424
R + K+G LF L G R + KW +Q K+ E +++G TG
Sbjct: 359 RLCTAKFGRKLFRLSGFRQDRSYDKKWKTANEEKAASEQEPPPAQISKILERFQNGTTGM 418
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
+IDA+ +EL TG+ SNR RQ A SF + + IDWR GAEW+E L+DYD SN+ NW
Sbjct: 419 GIIDASQRELFHTGYTSNRARQNAASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQ 478
Query: 485 YGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
Y AG GNDPR D R F+ KQA +YD+EG YV W+P+L+ L K
Sbjct: 479 YVAGTGNDPRGDARTFNPVKQAFDYDKEGTYVRMWVPELQGLEK 522
>gi|86147737|ref|ZP_01066045.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
gi|85834518|gb|EAQ52668.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
Length = 466
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 157/471 (33%), Positives = 234/471 (49%), Gaps = 40/471 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQF 138
K + + F NDLR+ DN+ L A S ++ V V+P + + ++ GA R F
Sbjct: 2 KKIGLYLFTNDLRINDNQLLHYAVQSVGKLICV-IVEPTLVRFSADLAQEQSYGAHRQTF 60
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
+ + + +L NL+ G L++ H E P A+ + + Q T
Sbjct: 61 VSQSITNLESNLVKFGQQLVVIHSNHLE--PDAAEQTLSQIIATQHVT---HFFANAHCG 115
Query: 199 KNLQQVVLSSQSNDKSTNHPQLK--LIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
+ +Q++ S QS HP L L +T++ ++ F+ S +P +T FRK +E
Sbjct: 116 YDERQLIHSLQSR-----HPNLITCLPHHSTLFDQHELSFELSKVPSSFTKFRKLVEHLD 170
Query: 257 TVRGCIRIPSSFGPPPSV---VDWGSVPLIEQLELHSPKVSKGM--RFVGGESAALGRVN 311
R I + PP+V + S SP + + GGE A L +
Sbjct: 171 VNRNETVISA---LPPAVRLALTSTSTSTSTISLFSSPNDESAVISDYWGGEDAGLAHLE 227
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
YF D YK+TRN G + STKFSPWLA G +SP+ IY +K +E + +NDSTY
Sbjct: 228 NYF-SHDYAFNYKQTRNAFDGIENSTKFSPWLALGCVSPKTIYCHLKQFEADHGSNDSTY 286
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQD--QKLFESWRDGCTGYPLIDA 429
W+ FEL+WR+YF + L G+SLF KL+ S W+ G T YP++DA
Sbjct: 287 WIYFELLWREYFYWKCLSLGSSLFGETSNHKLDSSNSSATLNLNLAKWKSGNTNYPIVDA 346
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ TG+MSNRGRQ+A S L+ ++GIDWR GA +FE+ L+DYD SN+GNW Y AG
Sbjct: 347 CMRQLNTTGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGA 406
Query: 490 --------------GNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
N + + R+F + KQ YD + ++ W + K L
Sbjct: 407 LRPQVSTQTNKQKNANQAQPKSRHFDLGKQTDMYDPDHAFINKWNVRSKEL 457
>gi|449298498|gb|EMC94513.1| hypothetical protein BAUCODRAFT_53277, partial [Baudoinia
compniacensis UAMH 10762]
Length = 579
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 167/536 (31%), Positives = 250/536 (46%), Gaps = 95/536 (17%)
Query: 82 VAIVWFRNDLRVLDNEAL-------LKAWDSSEMVLPVYCV-----------------DP 117
+ I R DLR+ DN ++ VLP+Y P
Sbjct: 2 ILIYLVRRDLRLADNPVFHEIGRLFSQSHQPFTHVLPIYIFPAEQIEVSGFLSPGVTRSP 61
Query: 118 RHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA 177
+Y GF + G LRAQF+ E + DL+++L + G L IR G +++ S+
Sbjct: 62 YPEARSYVGGFWRCGRLRAQFIAESVWDLKRDLESTGSGLQIRVGSVRDVVQSILDG--- 118
Query: 178 HAVYAQKETCSEELNVERLVRKNL-QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD--I 234
Y ++ C E++ + +++ ++ + D T + IW Y +DD +
Sbjct: 119 ---YRERHDC--EVHGLWMTKEDAWEEYEEEERVGDLMTAEGKEFKIWTDEKYLVDDRDL 173
Query: 235 PF-DHSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDW------------GSV 280
PF D L DV+T FRK++E + R + P P P V G++
Sbjct: 174 PFQDARELSDVFTSFRKTVEPLREAPRKELPRPEKLPPLPDFVPPQAPPFTIPDSLDGTI 233
Query: 281 -----PLIEQLELHS-----PKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEM 330
PL E LE+ P FVGG R++ + + + YK+TRN +
Sbjct: 234 AALFEPLDENLEITDMPTMPPGTQSAHPFVGGSQPGRERIH-HLIESGSMTAYKDTRNGL 292
Query: 331 LGPDYSTKFSPWLASGSISPRYIYEEVKSYERE------------RVANDSTYWVLFELM 378
LG D+STK S WLA G I+ R ++ + +E + N T V FEL+
Sbjct: 293 LGLDFSTKLSAWLALGCITARQVHWRLVEFEDGTTDLGKDAPGYGKGENKGTAAVRFELL 352
Query: 379 WRDYFRFISLKYGNSLFHLGGPRK--------LEYKWSQDQK--------------LFES 416
WRDY R + K+G LF+L G R + W+ + + E
Sbjct: 353 WRDYMRLCTRKFGKRLFYLPGYRHDKSAKFKMISSPWTTSTERKNRKGVNDEDTTVVVER 412
Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDP 476
+ G TG LIDA+ +EL +TG+ SNR RQ S+L + + IDWR+GAEW+ET L+DYD
Sbjct: 413 FLRGQTGTGLIDASQRELFLTGWTSNRARQNVASYLAKHLNIDWRLGAEWYETNLIDYDV 472
Query: 477 CSNYGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRN 531
+N+GNW Y +GVGNDPR E R F+ KQA +YD +YV W+P+L+ + RR+
Sbjct: 473 HNNWGNWQYNSGVGNDPRGEARVFNPVKQALDYDSNADYVRAWVPELRGVGMSRRD 528
>gi|290997872|ref|XP_002681505.1| predicted protein [Naegleria gruberi]
gi|284095129|gb|EFC48761.1| predicted protein [Naegleria gruberi]
Length = 528
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 196/359 (54%), Gaps = 57/359 (15%)
Query: 224 WGTTMYHLDDIPFDH--SSLPDVYTHFRKSIEAKCTVRG----CI--------------- 262
W +T+ H +D+P+ + +P V++ FRK IE + C
Sbjct: 114 WSSTLIHKNDLPYTDLPNQIPKVFSAFRKKIEKAIDEKDIEIECYEIEKEDYEELLLSEE 173
Query: 263 ---RIPSSFGPPPSVV----------------DWGSVPLIEQLELHSPKVSKGMRFVGGE 303
+I S F +++ D +++ V ++F+GGE
Sbjct: 174 EINKIHSQFSKNSNLITKLENVNEFMKEYLYPDMEKTQFDNEIKYDQRSV---VKFIGGE 230
Query: 304 SAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE 363
AL R F+ ++ LK Y TRN +G DYSTK SPWLA+G IS RYIY E++ E
Sbjct: 231 DKALKRCK--FYIENKLKNYSTTRNGNIG-DYSTKLSPWLANGCISSRYIYTEIQKNSNE 287
Query: 364 RVANDSTYWVLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWS-----QDQKLFE 415
+ + S ++ EL+WRD++++++ K GNS F+ L ++L+Y+W + F+
Sbjct: 288 K-SKSSANILVSELLWRDFYKYLAWKMGNSFFYEKALQPNKELDYEWEVPLNEYKNERFQ 346
Query: 416 SWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLD-Y 474
W G TGYP +DA M+EL TGFM+NRGR + SFL++DM IDWRMGAE+FE LLD
Sbjct: 347 QWCKGKTGYPFVDACMRELLNTGFMNNRGRMVVASFLIKDMKIDWRMGAEYFERQLLDST 406
Query: 475 DPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D CSNYGNW + AG+G D R RYF+ KQ ++D+ GE++ W+ +L ++P + + P
Sbjct: 407 DSCSNYGNWAWSAGIGCDFRP-RYFNPIKQGLDHDKNGEFIKIWIHELASVPSKSIHLP 464
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 85 VWFRNDLRVLDNEALLKA----WDSSEMVLPVYCVDPRHSQTTYHFGFPK 130
+WFRNDLR+ DNEAL A ++ +LP+Y D SQ F K
Sbjct: 34 IWFRNDLRIHDNEALYYAIKKAKKENKKLLPIYIFDKSQSQLPSPFSISK 83
>gi|189200290|ref|XP_001936482.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187983581|gb|EDU49069.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 675
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 158/478 (33%), Positives = 226/478 (47%), Gaps = 82/478 (17%)
Query: 130 KTGALRAQFLIECLADLRKNL--MNRGLNLLIRHGKPEEIIPSLAKSFGAH-------AV 180
+TG R QF+ + + DL+ L ++ G L R GK E++ + + V
Sbjct: 102 RTGPHRVQFIADGVWDLKNKLADLDCGSGLEQRVGKITEVVSDILDWYAKDENEGEISGV 161
Query: 181 YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD--IPFDH 238
+ ++ +EE E + K +Q H +W +++DD +P+D+
Sbjct: 162 WMTEDDATEEKREEAELAKITKQ-------------HGVDFKVWKDEKFYIDDRDLPYDN 208
Query: 239 -SSLPDVYTHFRKSIE---------------AKCTVRGCIRIPSSFGPPPSVVDWGSVPL 282
+ LP+VYT FRK E F P S+ D L
Sbjct: 209 IADLPNVYTTFRKVFEPLRDRPRETLPTPSLLPPLPPSIPPQKEPFSIPSSLADLKKA-L 267
Query: 283 IEQLE------LHSP-----KVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEML 331
+ LE L P F GGESA L R+ + + YK+TRN ML
Sbjct: 268 LSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGESAGLQRI-AHLVASGAMSSYKQTRNGML 326
Query: 332 GPDYSTKFSPWLASGSISPRYIYEEVKSYERERV-----------ANDSTYWVLFELMWR 380
G D+STK S +LA G I+ R ++ + +E R N+ T V FEL+WR
Sbjct: 327 GLDFSTKLSAYLAQGHITARQVHWAMLDFEEGRGPGEKKHAYGQGENEGTAAVRFELLWR 386
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQK------------------LFESWRDGCT 422
DY R K+G+ +F L G + K SQ +K +FE +R G T
Sbjct: 387 DYMRLCMRKFGHKMFGLYGIQDRGAKGSQHKKWKKLYKGEDGEDPQKTMEVFERFRSGRT 446
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
G LIDA+ +EL +TG+ SNR RQ SFL + IDWR+GAEW+E L+DYD SN+GN
Sbjct: 447 GVGLIDASNRELFVTGYTSNRARQNVASFLSSHLNIDWRVGAEWYECFLVDYDAASNWGN 506
Query: 483 WTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQ 540
W Y AGVGNDPR+ R F+ KQA +YD+ GEY+ W+P+L+ + R PG ++Q
Sbjct: 507 WQYVAGVGNDPRQGRVFNPVKQALDYDKRGEYIKAWVPELRDIKLTRTVGPGREEVDQ 564
>gi|452003519|gb|EMD95976.1| hypothetical protein COCHEDRAFT_1127294 [Cochliobolus
heterostrophus C5]
Length = 682
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 165/482 (34%), Positives = 237/482 (49%), Gaps = 83/482 (17%)
Query: 127 GFPKTGALRAQFLIECLADLRKNL--MNRGLNLLIRHGKPEEIIPSLAKSFGAH------ 178
G +TG RA+F+ + + +L+ L +N G L +R GK E++ + +
Sbjct: 99 GVWRTGPHRAKFIADGVWNLKDKLAGLNCGSGLEMRVGKIPEVVSDILDWYDKDENEGVI 158
Query: 179 -AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD--IP 235
V+ + +EE + L+S N K +W Y++DD +P
Sbjct: 159 SGVWITDDDATEEKDD------------LASLKNLTEQRGVDFK-VWVDEKYYVDDRDLP 205
Query: 236 F--DHSSLPDVYTHFRKSIEA-----KCTVRGCI-------RIPSSFGPP---PSVV--- 275
+ D S LP+VYT +RK +E + TV RIP PP PS +
Sbjct: 206 YYDDISKLPNVYTTYRKGLEPLRDRPRNTVPTPTQLPPLPSRIPPQ-KPPFTIPSTLEGL 264
Query: 276 -DWGSVPLIEQ--LELHSPKV-----SKGMRFVGGESAALGRVNEYFWKKDLLKVYKETR 327
D PL++ L P V F GGE+ L R+ ++ + + YK TR
Sbjct: 265 KDALLTPLLKDPTYTLKVPPVWPTDAQSAHPFSGGETNGLDRI-QHLVRTGAMSSYKATR 323
Query: 328 NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA-----------NDSTYWVLFE 376
N MLG D+STK S +LA G I+ R ++ + +E R N+ T V FE
Sbjct: 324 NGMLGLDFSTKISAYLAQGHITARQVHWAMFDFEEGRGPGEKVPGYGKGENEGTAAVRFE 383
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLE----------YKWSQ--------DQKLFESWR 418
L+WRDY R K+G +F L G + ++ KWS+ ++FE +R
Sbjct: 384 LLWRDYMRLCMRKFGYKMFSLYGIQTVDQKECDNKWKNLKWSKGPGDDPAKTAEVFERFR 443
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
G TG LIDA+ +EL +TG+ SNR RQ SFL + IDWR+GAEW+E L+DYD S
Sbjct: 444 SGRTGVGLIDASNRELFVTGYTSNRARQNVASFLSSHLSIDWRVGAEWYECFLVDYDAAS 503
Query: 479 NYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYI 538
N+GNW Y AGVGNDPR+ R F+ KQA +YD+ GEY+ W+P+L+ L R PG I
Sbjct: 504 NWGNWQYVAGVGNDPRQGRIFNPVKQALDYDKHGEYIKAWVPELRGLKLTRSLGPGKEEI 563
Query: 539 EQ 540
+Q
Sbjct: 564 DQ 565
>gi|389646117|ref|XP_003720690.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
gi|351638082|gb|EHA45947.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
Length = 826
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 175/579 (30%), Positives = 259/579 (44%), Gaps = 135/579 (23%)
Query: 69 RYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTY 124
R+++K RN V I FR DLRV DN L + +LPVY H + +
Sbjct: 52 RFSTKMAPRN---VLIYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISG 108
Query: 125 HF-----------------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEI 167
G+ + G RA+F+ + + D++ +L + LL+R G +++
Sbjct: 109 FISDQSEKSPYPEARSKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDV 168
Query: 168 IPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTT 227
+ L + A+ +TCS + E + + ++ +S+ + + +L
Sbjct: 169 LEGLLD-----GLKARGDTCSVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLV----DE 219
Query: 228 MYHLDDIPFDHSS---LPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPP----------- 272
Y +DD + + LP ++T +RKS+E + R + P PP
Sbjct: 220 KYFIDDRDLNFAEPQELPGIFTDYRKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQS 279
Query: 273 ------------------SVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
V D+ P E H+ + F GGE+A R+ +Y
Sbjct: 280 RPFSIPDTYEGFETALLKPVKDFSGAPFPE----HAENATTAHPFKGGETAGQERL-QYV 334
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA-------- 366
++K YK +RN ++GPD+STK S +LA G I+ R I+E + +YE A
Sbjct: 335 MSSGIIKDYKTSRNGLIGPDFSTKLSAYLAQGCITARQIHESLLAYEDGSAAELEEIEGY 394
Query: 367 ----NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRK-LEYKWSQDQKLFES----- 416
N +T V ELMWRDY R + K L+ + GPR Y S ++ +S
Sbjct: 395 GQGENINTKSVREELMWRDYMRLYARKIKEKLYSVEGPRGGRNYDSSNSGEVVDSGSPPI 454
Query: 417 -----WRD--------------------------GCTGYPLIDANMKELSMTGFMSNRGR 445
W+ G TG LIDA+M+EL TG+ SNR R
Sbjct: 455 AKKVIWKTPDPATADPRQIPEPEKIKVCLDRFLAGTTGLGLIDASMRELMHTGYTSNRAR 514
Query: 446 QIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR-EDRYFSIPKQ 504
Q A +FL + +GIDWR GAEW+E L+DYD CSN+ NW Y AGVGNDPR E R F+ KQ
Sbjct: 515 QNAANFLAKHLGIDWRWGAEWYEMLLVDYDVCSNWANWQYVAGVGNDPRGEARIFNPVKQ 574
Query: 505 AQNYDREGEYVAYWLPQL--------------KALPKER 529
A +YD+EG YV W+P+L KA P+ER
Sbjct: 575 AFDYDKEGAYVKMWVPELAPFGNKLELVFQACKATPQER 613
>gi|302422386|ref|XP_003009023.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
gi|261352169|gb|EEY14597.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
Length = 703
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 171/521 (32%), Positives = 251/521 (48%), Gaps = 81/521 (15%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTYHF----------- 126
+ I R+DLRV DN L S + +LPVY V P H T F
Sbjct: 7 ILIYLLRHDLRVSDNPILHHLATSKDHGFTHLLPVY-VFPAHQIETSGFIRDGSKSPYPE 65
Query: 127 ------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAV 180
F + G RA+F+ + + +L+++ G L +R G+ ++++ L K
Sbjct: 66 ARSQVGSFWRCGPHRAKFIAQSVWNLQESFQGLGSGLCLRAGRFDDVLNGLLKGL----T 121
Query: 181 YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFD--- 237
Q+ + + +E V + + +SS S N+ + KL W Y +DD +
Sbjct: 122 EKQQTIGAVWMTLEDAVEEKRDEKAVSSIC---SENNIEFKL-WQDEKYFVDDRDTELEN 177
Query: 238 HSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWGSVPL-------------- 282
LPD++T +RK+ E + R + PS+ PP D VP+
Sbjct: 178 AHDLPDIFTTYRKTQEPLRERPRPTLPKPSNNSLPPYPSD-DVVPVQERPFEMPVTYEEL 236
Query: 283 -------IEQLELHSPKVSKGMRFV----GGESAALGRVNEYFWKKDLLKVYKETRNEML 331
+E + +P+ V GGE AL RVN + K + YK TRN +L
Sbjct: 237 EAALLKPVEDVLDDAPEYPSNATSVHPLKGGELDALQRVN-HLIKSCSMSNYKNTRNGLL 295
Query: 332 GPDYSTKFSPWLASGSISPRYIYEEVKSYERERV------------ANDSTYWVLFELMW 379
G D+STK S +LA G ++ R ++EE+ YE + N+ T V FEL+W
Sbjct: 296 GVDFSTKLSGYLALGCLTARQVHEEMVKYEDGQGPQYKEIDGFGNGENEGTKAVRFELLW 355
Query: 380 RDYFRFISLKYGNSLFHLGGPR--KLEYKWSQDQK-----LFESWRDGCTGYPLIDANMK 432
RDY R + K+G+ LF G R + +W ++ + + + G TG IDA+ +
Sbjct: 356 RDYMRLCTRKFGHRLFRAEGFRDDRKPTQWKTAKQPEIAEILKRFLAGTTGMGFIDASQR 415
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TG+ SNR RQ SFL + +GIDWR GAEW+E L+DYD SN+ NW Y AGVGND
Sbjct: 416 ELLHTGYTSNRARQNVASFLAKHLGIDWRYGAEWYECMLIDYDVSSNWSNWQYVAGVGND 475
Query: 493 PR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNF 532
PR E R F+ KQA +YD++GEYV W+P+ + L K F
Sbjct: 476 PRGEARIFNPVKQAFDYDKQGEYVKAWVPETRQLEKLENAF 516
>gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis]
gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis]
Length = 526
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 131/334 (39%), Positives = 187/334 (55%), Gaps = 36/334 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
AIVWFRNDLRV DNEAL A + VLPVYC DPR + GF KTG RA FL+E
Sbjct: 189 AAIVWFRNDLRVHDNEALSSANKEALSVLPVYCFDPRDYGKSSS-GFDKTGPFRATFLLE 247
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
C+A+LR NL RG +L++R G+PEE++ LAKS GA A+YA +E EE+ E ++ +L
Sbjct: 248 CVANLRANLRERGSDLVVRIGRPEEVLVELAKSIGADALYAHQEVSHEEIATEEKIKSSL 307
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ + + K WG+T+YH +D+PF +P Y FR+ ++ + +VR
Sbjct: 308 EEEGV------------ETKFFWGSTLYHPEDLPFKLQDMPSNYGGFRERVQ-RLSVRQI 354
Query: 262 IRIPSSFGPPPSV--VDWGSVPLIEQLEL-----HSPKVSKGMRFVGGESAALGRVNEYF 314
I+ P P+ V+ G VP + L L K + GGES AL R+ +
Sbjct: 355 IKDPEQLKGLPTRGDVEPGKVPSLLDLGLNPNFGQDGKTAVNASLTGGESEALQRLKRFA 414
Query: 315 --WKKDLLKVYKETRNEML-GPDYSTKFSPWLASGSISPRYIYEEVKSYERERV------ 365
++ K+ K+ E L G ++S K SPWLA G +SPRY++EE+K E+ +
Sbjct: 415 VECREQPNKLGKDGSGESLYGANFSCKISPWLAMGCLSPRYMFEELKKSEKISISSSLGK 474
Query: 366 ------ANDSTYWVLFELMWRDYFRFISLKYGNS 393
W+ FEL+WRD+FRFI+ KYG++
Sbjct: 475 SSGADSGQGGLNWLKFELLWRDFFRFITKKYGSA 508
>gi|336451493|ref|ZP_08621930.1| cryptochrome, DASH family [Idiomarina sp. A28L]
gi|336281306|gb|EGN74586.1| cryptochrome, DASH family [Idiomarina sp. A28L]
Length = 484
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 142/225 (63%), Gaps = 5/225 (2%)
Query: 299 FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK 358
F GGE+A R+ +Y + YKETRN ++G DYS+K SPWL G ISP + + V+
Sbjct: 262 FKGGETAGQRRLQDY--AASAVGHYKETRNGLIGADYSSKLSPWLNLGCISPAQVLQAVR 319
Query: 359 SYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY--KWSQDQKLFES 416
YE E AN ST W++ EL+WRD+F+F++ ++G LF G + L + + + F +
Sbjct: 320 EYEAEHGANASTEWLIVELLWRDFFQFLAAEHGADLFQ-GSAKALGKVPENTDNDPTFLA 378
Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDP 476
W G T ++ANM+EL+ TGFMSNRGRQ S L+ DMGIDWR GA WFE LLDYDP
Sbjct: 379 WCAGETSNEFVNANMRELAKTGFMSNRGRQNVASALIHDMGIDWRWGALWFEANLLDYDP 438
Query: 477 CSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQ 521
SNYGNW Y G+ +PR +F++ KQAQ YD EG Y W Q
Sbjct: 439 ASNYGNWQYIGGLAANPRGGSWFNLKKQAQMYDTEGAYQKLWQAQ 483
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMV-LPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR +LRV +N AL A DS L V+C D +++ T G P+ LRA+FL E
Sbjct: 9 LVWFRRNLRVANNPALEAAADSQHAKPLGVFCYDQQYTGTW--LGMPRCAPLRAKFLWES 66
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ DL++ L G L+++ +PE ++P L + V+ Q+ EE+ V + L
Sbjct: 67 VQDLQQQLQQMGGELIVQAEEPETLLPKLCQELNITHVHTQRLFAHEEVAAAERVLQALN 126
Query: 203 QV 204
+
Sbjct: 127 AI 128
>gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
Length = 345
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 185/341 (54%), Gaps = 33/341 (9%)
Query: 69 RYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGF 128
RY + A + +IVWFRNDLRV DNEAL A S V+PVYC DP+ + GF
Sbjct: 8 RYGNPAAGAGMRRASIVWFRNDLRVHDNEALAAANKESLSVIPVYCFDPKDYGKSAS-GF 66
Query: 129 PKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCS 188
KTG RA+FL+EC+A+LR NL RG L++R G P E++ ++AK+ GA +YA +E S
Sbjct: 67 DKTGPYRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSS 126
Query: 189 EELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF 248
EEL +E V L+ + +K WG+T++H+DD+PF +P Y F
Sbjct: 127 EELGMEDKVTSALKD------------QNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGF 174
Query: 249 RKSIEAKCTVRGCIRIPSSFGPPPSV--VDWGSVPLIEQLELHSPKVSKGM----RFVGG 302
R ++ VR P PS V G +P +++L L SP + G R +GG
Sbjct: 175 RDKVK-DVQVRAATEAPKQLKGLPSQGDVKAGDIPSLQELGL-SPVSAAGQHKRNRMIGG 232
Query: 303 ESAALGRVNEY-FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE 361
E AL R+ + K KE N + G ++S+K SPWLA G +SPR ++E++K
Sbjct: 233 EVEALKRLKSFSLVSPPPSKGGKE--NSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTT 290
Query: 362 RERV---------ANDSTYWVLFELMWRDYFRFISLKYGNS 393
V + W++FEL+WRD+FRF++ K+G +
Sbjct: 291 SRFVLDSVVASTSGDSGMQWLVFELLWRDFFRFVTKKHGAA 331
>gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
Length = 345
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 185/341 (54%), Gaps = 33/341 (9%)
Query: 69 RYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGF 128
RY + A + +IVWFRNDLRV DNEAL A S V+PVYC DP+ + GF
Sbjct: 8 RYGNPAAGAGMRRASIVWFRNDLRVHDNEALAAANKESLSVIPVYCFDPKDYGKSAS-GF 66
Query: 129 PKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCS 188
KTG RA+FL+EC+A+LR NL RG L++R G P E++ ++AK+ GA +YA +E S
Sbjct: 67 DKTGPYRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSS 126
Query: 189 EELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF 248
EEL +E V L+ + +K WG+T++H+DD+PF +P Y F
Sbjct: 127 EELGMEDKVTSALKD------------QNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGF 174
Query: 249 RKSIEAKCTVRGCIRIPSSFGPPPSV--VDWGSVPLIEQLELHSPKVSKGM----RFVGG 302
R ++ VR P PS V G +P +++L L SP + G R +GG
Sbjct: 175 RDKVK-DVQVRAATEAPKQLKGLPSQGDVKAGDIPSLQELGL-SPVSAAGQHKRNRMIGG 232
Query: 303 ESAALGRVNEY-FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE 361
E AL R+ + K KE N + G ++S+K SPWLA G +SPR ++E++K
Sbjct: 233 EVEALKRLKSFSLVSPPPSKGGKE--NSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTT 290
Query: 362 RERV---------ANDSTYWVLFELMWRDYFRFISLKYGNS 393
V + W++FEL+WRD+FRF++ K+G +
Sbjct: 291 SRFVLDSLVASTSGDSGMQWLVFELLWRDFFRFVTKKHGAA 331
>gi|322709598|gb|EFZ01174.1| Putative cryptochrome DASH [Metarhizium anisopliae ARSEF 23]
Length = 695
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 175/529 (33%), Positives = 257/529 (48%), Gaps = 90/529 (17%)
Query: 80 KGVAIVWF-RNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRH----------SQTTY 124
+G +V+ R DLRV DN L +S+ +LPVY + Q+ Y
Sbjct: 3 RGKLLVYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFPAQQVELSGFLKDGEQSPY 62
Query: 125 -----HFG-FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH 178
G F + G RA+F E + +L+++L G L+IR G +++ L
Sbjct: 63 PPARSQVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVFDHLVNELKDA 122
Query: 179 AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF-- 236
+EE + E + +Q +SS + + + KL W Y +DD
Sbjct: 123 VPCVSSVWMTEEPSWEEVQ----EQESISSLCSKRGI---EFKL-WKDEKYFVDDRDTGL 174
Query: 237 -DHSSLPDVYTHFRKSIE-------------AKCTVRGCIR---IPSSFGP---PPSVVD 276
+ + LPDV+T +RKS E AK + + IP+ P P S+ D
Sbjct: 175 ENPADLPDVFTTYRKSQEPLREKPRKVLPRPAKSALPAFPQEGSIPAQAHPFLSPVSLED 234
Query: 277 WGS--VPLIEQLELHSPK----VSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEM 330
V +E + + PK + G F GGE++ R+ + K + YK+TRN +
Sbjct: 235 LQKRLVKPVENIMDNPPKRPEDATDGHPFTGGETSGWARLR-HLGKSSAMTSYKDTRNGL 293
Query: 331 LGPDYSTKFSPWLASGSISPRYIYEEVKSYE-------RERVA-----NDSTYWVLFELM 378
+G DYS K S +L+ G ++ R I+EE+ E ++ V ND T + FEL+
Sbjct: 294 VGVDYSLKLSGYLSLGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELL 353
Query: 379 WRDYFRFISLKYGNSLFHLGGPRK---LEYKW----------------SQDQKLFESWRD 419
WRDY R + K+G LF L G R+ + KW +Q K+ E +++
Sbjct: 354 WRDYMRLCTAKFGRKLFRLSGFRQDSSYDKKWKTADEEKAGPEQEPDPAQISKILERFQN 413
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TG LIDA+ +EL TG+ SNR RQ A SF + + IDWR GAEW+E L+DYD SN
Sbjct: 414 GTTGMGLIDASQRELFHTGYTSNRARQNAASFFSKHLEIDWRYGAEWYEMMLVDYDVSSN 473
Query: 480 YGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
+ NW Y AG+GNDPR D R F+ KQA +YD+EG YV W+P+L+ L K
Sbjct: 474 WANWQYVAGIGNDPRGDARTFNPVKQAFDYDKEGIYVRMWVPELQGLEK 522
>gi|218709609|ref|YP_002417230.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
gi|218322628|emb|CAV18793.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
Length = 470
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 156/467 (33%), Positives = 234/467 (50%), Gaps = 42/467 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQF 138
K + + F +DLR+ DN+ L A S + ++ V V+P + + ++ GA R F
Sbjct: 2 KKIGLYLFTSDLRINDNQLLHCAAQSVDKLIFV-IVEPTLVRFSADLAQEQSYGAHRQTF 60
Query: 139 LIECL--ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+ + + +L NL+ G L++ H E P A+ + + Q T
Sbjct: 61 VSQSIDNLELNLNLVRLGQQLVVIHSNHLE--PDAAEQTLSQIIATQHVT---HFFANAH 115
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLK--LIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
+ +Q++ S QS HP L L +T++ ++PF+ S +P +T FRK +E
Sbjct: 116 CGYDERQLIHSLQSR-----HPDLITCLPHHSTLFDSHEMPFELSKVPSSFTKFRKLVEH 170
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNE 312
G I P + I SP V + + ++GGE A L ++
Sbjct: 171 LDVNGGETVIAHLPPPVTPTLTPAHTTAIPIFS--SPNVERAVTNDYLGGEDAGLAHLDN 228
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
YF D YK+TRN G + STKFSPWLA G +SP+ I +K +E E +NDSTYW
Sbjct: 229 YF-AHDYALNYKQTRNAFDGIENSTKFSPWLALGCVSPKTICRHLKQFEIEHGSNDSTYW 287
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKL--FESWRDGCTGYPLIDAN 430
+ FEL+WR+YF + L G SLF +KL S F W+ G T YP++DA
Sbjct: 288 IYFELLWREYFYWKCLSQGPSLFGNFSDKKLYPPNSSGTSNLNFAKWKSGNTNYPIVDAC 347
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+MSNRGRQ+A S L+ ++GIDWR GA +FE+ L+DYD SN+GNW Y AG
Sbjct: 348 MRQLNETGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGAL 407
Query: 491 N------DPRED-------------RYFSIPKQAQNYDREGEYVAYW 518
N D +++ R+F + KQ YD + ++ W
Sbjct: 408 NSQVNTQDNKQNDAKQPKPKTKPKSRHFDLGKQTNMYDPDHAFINKW 454
>gi|330920090|ref|XP_003298886.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1]
gi|311327731|gb|EFQ93028.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1]
Length = 678
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 157/479 (32%), Positives = 230/479 (48%), Gaps = 83/479 (17%)
Query: 130 KTGALRAQFLIECLADLRKNL--MNRGLNLLIRHGKPEEIIPSLAKSFGAH-------AV 180
+TG R QF+ + + DL+ L ++ G L R G+ E++ + + V
Sbjct: 102 RTGPHRVQFIADGVWDLKNKLAGLDCGSGLEQRVGRLTEVVSDILNWYSKDENEGVISGV 161
Query: 181 YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD--IPFDH 238
+ ++ +EE E + + +Q + + +W +++DD +P+D+
Sbjct: 162 WMTEDDATEEKQEEAELAEITKQHGIDFK-------------VWKDEKFYIDDRDLPYDN 208
Query: 239 -SSLPDVYTHFRKSIE---------------AKCTVRGCIRIPSSFGPPPSVVDWGSVPL 282
+ LP+VYT FRK+ E F P S+ D L
Sbjct: 209 IADLPNVYTTFRKAFEPLRDRPRETLPTPSQLPPLPPSIPPQKEPFSIPSSLADLKKA-L 267
Query: 283 IEQLE------LHSP-----KVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEML 331
+ LE L P F GGESA L R+ + + YK+TRN ML
Sbjct: 268 LSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGESAGLQRI-AHLVASGAMGSYKQTRNGML 326
Query: 332 GPDYSTKFSPWLASGSISPRYI------YEEVKSYERERVA-----NDSTYWVLFELMWR 380
G D+STK S +LA G I+ R + +EE + +R A N+ T V FEL+WR
Sbjct: 327 GLDFSTKLSAYLAQGHITARQVHWAMFDFEEGRGPGEKRHAYGQGENEGTAAVRFELLWR 386
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQK-------------------LFESWRDGC 421
DY R K+G+ +F L G + K SQ +K +FE +R G
Sbjct: 387 DYMRLCMRKFGHKMFALYGIQDRGAKGSQHKKWKKLHKSGEDGENPQKTMEIFERFRSGR 446
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG LIDA+ +EL +TG+ SNR RQ SFL + IDWR+GAEW+E L+DYD SN+G
Sbjct: 447 TGVGLIDASNRELFVTGYTSNRARQNVASFLSSHLNIDWRIGAEWYECFLVDYDAASNWG 506
Query: 482 NWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQ 540
NW Y AGVGNDPR+ R F+ KQA +YD+ GEY+ W+P+L+ + R PG ++Q
Sbjct: 507 NWQYVAGVGNDPRQGRVFNPVKQALDYDKRGEYIKAWVPELRDIKLTRTVGPGREEVDQ 565
>gi|302918988|ref|XP_003052768.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
77-13-4]
gi|256733708|gb|EEU47055.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
77-13-4]
Length = 640
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 174/552 (31%), Positives = 262/552 (47%), Gaps = 98/552 (17%)
Query: 79 GKGVAIVWFRNDLRVLDN---EALLKAWDSSEMVLPVYCVDPRHSQTTYHFG------FP 129
G + + R DLR DN L A +LPVY + P + + +P
Sbjct: 3 GSKLLVYLLRRDLRATDNPILHHLATADHGFTHLLPVYVLPPHQIEVSGFLTENQKSPYP 62
Query: 130 KT----------GALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF---- 175
K G RA+F E + DL+ +L + G L++R G +++ L ++
Sbjct: 63 KALSQVGRFWRCGPHRAKFTAESVWDLKDSLEDLGSGLVLRIGSFSDVVRQLIQALNDNH 122
Query: 176 -GAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI 234
AV+ ++ SEE++ Q +S+ ++KS +W Y +DD
Sbjct: 123 HSVDAVWMTEDVSSEEVD---------DQDAVSAVCSEKSVGFK----LWRDDKYFIDDN 169
Query: 235 PFDHSSLPDVYTHFRKSIEA-KCTVRGCIRIPSS----------------FGPPPSVVDW 277
P LPDV+T +RK+ E + R + P + F P + ++
Sbjct: 170 P---KELPDVFTSYRKTQEPLRERPRRSLPRPQAGSLPPLPPWTPPQDAPFQVPDTYEEF 226
Query: 278 GSVPL--IEQLELHSPKVSKGMR----FVGGESAALGRVNEYFWKKDLLKVYKETRNEML 331
L I+ + + P + + + F GGES A R+ + + + Y+ETRN +L
Sbjct: 227 ERRLLQPIDYMLANPPVLPQDAKSAHPFDGGESFAWERL-RHLIRTGGMCTYQETRNGLL 285
Query: 332 GPDYSTKFSPWLASGSISPRYIYEEV--------KSYER----ERVANDSTYWVLFELMW 379
G DYSTK S +LA G IS R I+EE+ ++Y R +R N+ T V FEL+W
Sbjct: 286 GKDYSTKLSGYLALGCISARSIHEELLKLEDGTDQAYARARGFDRGENEGTKAVRFELLW 345
Query: 380 RDYFRFISLKYGNSLFHLGGPR----KLEYKWSQDQK----------------LFESWRD 419
RDY R + K+G LF + G + + E KW K + + + +
Sbjct: 346 RDYMRLCTKKFGAQLFRVSGFKGATGQYEKKWKTADKKTAAIDQDPSPEEVGTIIDRFLE 405
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TG IDA+ +EL TG+ SNR RQ SF + +GIDWR GAEW+E L+DYD SN
Sbjct: 406 GTTGMGFIDASQRELYHTGYTSNRARQNVASFFSKHLGIDWRYGAEWYEMMLVDYDVSSN 465
Query: 480 YGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYI 538
+ NW Y AGVGNDPR D R F+ KQA +YD G YV W+P++K + K F +
Sbjct: 466 WANWQYVAGVGNDPRGDARIFNPVKQAFDYDNNGAYVRTWVPEVKYIEKLENVFQVWTTD 525
Query: 539 EQIVSLKHGNIN 550
E+ + LK+G ++
Sbjct: 526 EEEL-LKYGIVD 536
>gi|346970183|gb|EGY13635.1| cryptochrome DASH [Verticillium dahliae VdLs.17]
Length = 700
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 172/521 (33%), Positives = 252/521 (48%), Gaps = 81/521 (15%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTYHF----------- 126
+ I R+DLRV DN L + +LPVY V P H T F
Sbjct: 7 ILIYLLRHDLRVSDNPILHHLATCKDHGFTHLLPVY-VFPAHQIETSGFIRDGSKSPYPE 65
Query: 127 ------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAV 180
F + G RA+F+ + + +L+++ G L +R G+ ++++ L K
Sbjct: 66 ARSQVGSFWRCGPHRAKFIAQSVWNLQESFQGLGSGLCLRAGRFDDVLNGLLKGLSE--- 122
Query: 181 YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFD--- 237
Q+ + + +E V + + +SS S N+ + KL W Y +DD +
Sbjct: 123 -KQQTVGAVWMTLEDAVEEKRDEKAVSSIC---SENNIEFKL-WQDEKYFVDDRDTELEN 177
Query: 238 HSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWGSVPL----------IEQL 286
LPD++T +RK+ E + R + PS+ PP D VP+ E+L
Sbjct: 178 AHDLPDIFTTYRKTQEPLRERPRPTLPKPSNGSLPPYPSD-DVVPVQEKPFEMPATYEEL 236
Query: 287 ELHSPKVSKGMR---------------FVGGESAALGRVNEYFWKKDLLKVYKETRNEML 331
E K K + GGE AL RV+ + K + YK TRN +L
Sbjct: 237 EAALLKPVKDVLDDAPEYPSEATSVHPLKGGEVDALQRVD-HLIKSCSMSNYKNTRNGLL 295
Query: 332 GPDYSTKFSPWLASGSISPRYIYEEVKSYERERV------------ANDSTYWVLFELMW 379
G D+STK S +LA G ++ R ++EE+ YE + N+ T V FEL+W
Sbjct: 296 GVDFSTKLSGYLALGCLTARQVHEEMVKYEDGQGLEYKEIEGFGNGENEGTKAVRFELLW 355
Query: 380 RDYFRFISLKYGNSLFHLGGPRK----LEYKWSQDQKLFESWR---DGCTGYPLIDANMK 432
RDY R + K+G+ LF G R +++K ++ ++ E + G TG IDA+ +
Sbjct: 356 RDYMRLCTRKFGHRLFRAEGFRDDRKPIQWKTAKQPEIAEILKRFLAGTTGMGFIDASQR 415
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TG+ SNR RQ SFL + +GIDWR GAEW+E L+DYD SN+ NW Y AGVGND
Sbjct: 416 ELLHTGYTSNRARQNVASFLAKHLGIDWRYGAEWYECMLIDYDVSSNWSNWQYVAGVGND 475
Query: 493 PR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNF 532
PR E R F+ KQA +YD++GEYV W+P+ + L K F
Sbjct: 476 PRGEARIFNPVKQAFDYDKQGEYVKAWVPETRKLEKLENAF 516
>gi|449436489|ref|XP_004136025.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
gi|449498514|ref|XP_004160558.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
Length = 451
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 185/335 (55%), Gaps = 34/335 (10%)
Query: 78 NGKGV---AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
NG G+ IVWFRNDLR+ DNE L A D S VLPVYC DPR + GF KTG
Sbjct: 115 NGAGIRRATIVWFRNDLRLQDNECLNSAHDDSMSVLPVYCFDPRDYGKSSS-GFDKTGPF 173
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RA F+IE ++DLRKNL RG NL++R GKPE ++ LAK GA AVYA E +E+ E
Sbjct: 174 RAAFVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEMETE 233
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
+ +++ + ++K WG+T+YH+DD+PF +P + FR+ ++
Sbjct: 234 ERIESAMKE------------ENVEVKYFWGSTLYHIDDLPFKMEDMPSSHGAFREKVQG 281
Query: 255 KCTVRGCIRIPSSFGPPPSV--VDWGSVPLIEQLELHSPK-------VSKGMRFVGGESA 305
+VR I PS V+ G +P + L L+ P ++ VGGE+
Sbjct: 282 -LSVRKTIEALDKMKGLPSRGDVEPGDIPSLSDLGLNQPVAMSKEGWLAPNTSQVGGETE 340
Query: 306 ALGRVNEYFWKKDLLKVYKETRN----EMLGPDYSTKFSPWLASGSISPRYIYEEV-KSY 360
AL R+ +Y + + K T N + G +S K SPWL G ISPR +++E+ K+
Sbjct: 341 ALHRLQKY-AAECRAQPPKATNNGVQSSIYGATFSNKISPWLTMGCISPRSVFDELNKTV 399
Query: 361 ERERVAND--STYWVLFELMWRDYFRFISLKYGNS 393
R+ + T W++FEL+WRD+FRFI+ KY ++
Sbjct: 400 SRKNDGGNGTGTNWLMFELLWRDFFRFITKKYNST 434
>gi|452847838|gb|EME49770.1| hypothetical protein DOTSEDRAFT_144060, partial [Dothistroma
septosporum NZE10]
Length = 610
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 175/541 (32%), Positives = 252/541 (46%), Gaps = 105/541 (19%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM-------VLPVYC-----------VDPRHSQTT 123
V I R DLR+ DN L + ++ VLPVY + P ++
Sbjct: 4 VLIYLLRRDLRLADNPILNEISRLNQHSQRPFTHVLPVYVFPAQQVEVSGFLSPGEEKSP 63
Query: 124 YHFG------FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF-- 175
Y F + G LRA+FL E + DL+ +L L IR G ++++ S+ +
Sbjct: 64 YPEARSATARFWRCGKLRAKFLAESVFDLQNDLEKFSSGLTIRIGTVKDVVRSILDGYRQ 123
Query: 176 ----GAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHL 231
HA++ E EE E VR + + + KL W Y +
Sbjct: 124 RDDAEVHALWMTGEDGWEEQIEENDVRDLMH------------SEKKEFKL-WNDEKYFV 170
Query: 232 D--DIPF-DHSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPP--------------- 272
D D+P D L DV+T FRK++E + R + S P P
Sbjct: 171 DDRDLPLKDPRDLNDVFTAFRKTVEPLRSAPRKELPEIKSLPPLPDFIPEQAKPFEIPQT 230
Query: 273 --SVVDWGSVPLIEQLEL-HSPKVSKGMR----FVGGESAALGRVNEYFWKKDLLKVYKE 325
+ S PL + E+ +P + G F+GG A + RVN + + + YK+
Sbjct: 231 LKDAIAGLSKPLDKDDEIPGAPSLPVGASSAHPFIGGSKAGVERVN-HLLESGSMTAYKD 289
Query: 326 TRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYER------------ERVANDSTYWV 373
TRN +LG D+STK S WLA G I+ R ++ + +E + N T V
Sbjct: 290 TRNGLLGLDFSTKLSAWLALGCITSRQVHWRMIDFENGKGETGKNANGYGKGENKGTAAV 349
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE----------YKWSQDQK----------- 412
FEL+WRDY R + K+G LF +GG R+ + Y S +K
Sbjct: 350 RFELLWRDYMRLCTRKFGTRLFWVGGYREDKQANSRFISSPYTSSTKKKNTGGTNDEDTR 409
Query: 413 -LFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCL 471
E + G TG LIDA+ +EL +TG+ SNR RQ S+L + +G+DWR+GAEW+E L
Sbjct: 410 NTVERFIAGRTGTGLIDASQRELFLTGWTSNRARQNVASYLSKHLGLDWRIGAEWYEMNL 469
Query: 472 LDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERR 530
+DYD SN+GNW Y AGVGNDPR D R F+ KQA +YD GEYV W+P+L+ + + +
Sbjct: 470 IDYDLSSNWGNWQYVAGVGNDPRGDARVFNPVKQAVDYDANGEYVRTWVPELRDVGRGDK 529
Query: 531 N 531
N
Sbjct: 530 N 530
>gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 448
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/348 (35%), Positives = 196/348 (56%), Gaps = 38/348 (10%)
Query: 70 YTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP 129
+ S A G+ +VWFR DLR+ D+E L A +S +LPV+ DPR + GF
Sbjct: 96 FPSGAPGAAGRRRTLVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPS-GFD 154
Query: 130 KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE 189
+TG RA FL++ +ADLR++L RG +L++R G+PE +IP LA++ GA AVYA E +
Sbjct: 155 RTGPYRASFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRD 214
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
E E V K +++ + ++K WG+T+YHLDD+PF + +P Y FR
Sbjct: 215 ECRTEEKVSKAIEKEGV------------EVKYFWGSTLYHLDDLPFRLNDMPSSYGGFR 262
Query: 250 KSIEAKCTVRGCIRIPSSFG--PPPSVVDWGSVPLIEQLELHSP-------KVSKGMRFV 300
++++ VR + P P +V++ G +P + +L L +P K + G +
Sbjct: 263 EAVKG-LEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLI 321
Query: 301 GGESAALGRVNEYFWKKDLL---KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
GGE+ AL R+ ++ + + V T+N + G ++S K SPWLA+G +SPR++YEE+
Sbjct: 322 GGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEEL 381
Query: 358 KSYERERVANDS------------TYWVLFELMWRDYFRFISLKYGNS 393
K + + + S T W++FEL+WRD+FRF++ KY ++
Sbjct: 382 KKHAIRAIPSGSTPKDGDGTSDAGTNWLMFELLWRDFFRFVTKKYSSA 429
>gi|406861424|gb|EKD14478.1| DASH family cryptochrome [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 660
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 173/534 (32%), Positives = 251/534 (47%), Gaps = 97/534 (18%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM-----VLPVYCVDPRHSQTTYHF---------- 126
V I R DLR+ DN L +++ +LP+Y + +
Sbjct: 6 VLIYLMRRDLRISDNPILHSLATTTKQHGFTHLLPLYVFSAQQLEVKGFIADSDIKSPYP 65
Query: 127 -------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH- 178
GF +TG R FL EC+ D+++ L G L IR G ++ L F +
Sbjct: 66 EARSPVGGFWRTGPHRVTFLAECIWDVKEGLEKLGSGLCIRVGTVGAVVDDLLSKFESKG 125
Query: 179 -----AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD 233
AV+ E EE + E V+K ++ + Q +W Y +DD
Sbjct: 126 EVKVGAVWMVGEEGVEEAHEESQVKKACREAGVQFQ-------------LWTDEKYLIDD 172
Query: 234 --IPFDH-SSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPP----SVVDW-------G 278
+P + L D++T +RK++E + R + +P+ PP S+ D G
Sbjct: 173 RDLPLPNIDELSDIFTSYRKTVEPLRDHPRDALPVPTKGALPPFPAESIPDQREPFTIPG 232
Query: 279 SV---------PL-IEQLELHSPKVSKGMR----FVGGESAALGRVNEYFWKKDLLKVYK 324
S+ PL E L + P G F+GGES A R+ EY K + Y
Sbjct: 233 SLDDLQKALLKPLNAEDLVRNPPPYPAGTTSAHPFLGGESQAQDRL-EYLITKGNVVNYH 291
Query: 325 ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA------------NDSTYW 372
TRN +LG D+STK S +L+ G I+ R I+ + ++E A ND T
Sbjct: 292 STRNGLLGHDFSTKLSAYLSLGCITSRQIHASLLAFENGTNAAYASVPEYGKGQNDGTKS 351
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQK------------LFESWRD 419
+ FEL+WRDY R + K+G LF L G + + E +WS + + + +
Sbjct: 352 IRFELLWRDYMRLCTRKFGPKLFRLSGFKAEGEERWSSPSRPGPGLTPAHVREQIDRFLN 411
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TG LIDA+++E+ TG+ SNR RQ SFL + + IDWR+GAEW+E L+DYD SN
Sbjct: 412 GTTGMGLIDASLREMYHTGYTSNRARQNVASFLAKHLKIDWRIGAEWYECMLVDYDLSSN 471
Query: 480 YGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNF 532
+GNW Y AGVGNDPR E R F+ KQA +YD G+YV W+P+L+ L F
Sbjct: 472 WGNWQYLAGVGNDPRGEARIFNPVKQAFDYDPHGDYVKAWIPELRGLTDSSEVF 525
>gi|156055622|ref|XP_001593735.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980]
gi|154702947|gb|EDO02686.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 651
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 166/524 (31%), Positives = 246/524 (46%), Gaps = 89/524 (16%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTYHF----------- 126
+ I R DLRV DN L + + +LP+Y + + +
Sbjct: 6 ILIYLMRRDLRVADNPILHSLIHNKDHGFTHLLPLYVFAAQQIEVSGFIPEDGGKSPYPE 65
Query: 127 ------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAV 180
F + G RA+FL + + DL+ G L IR G +EI+ L + F
Sbjct: 66 ARSQLGAFWRCGPHRAKFLAQSVWDLKDGFEKIGSGLSIRVGMVDEIVKGLIERF----- 120
Query: 181 YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKL-IWGTTMYHLDD--IPF- 236
+E +++ + + + +S K + + +W Y +DD +PF
Sbjct: 121 ---EEGAGSKVSAVWMTSEEGVEEKREERSTKKICDKAGVDFKLWQDEKYFVDDRDLPFE 177
Query: 237 DHSSLPDVYTHFRKSIEA-KCTVRGCIRIP--SSFGPPPSVVDWGSVPLI-----EQLEL 288
D L D+YT +RKS+E + R + P +S P P+ V P + E++E
Sbjct: 178 DPKDLSDIYTTYRKSVEPLRNAPRPDLPKPEMNSLPPFPTDVPPQHSPFVIPTKYEEIEA 237
Query: 289 -------------HSPKVSKGMR----FVGGESAALGRVNEYFWKKDLLKVYKETRNEML 331
+ PK + F GGES A R+ E+ + YK +RN ++
Sbjct: 238 ALLKPINSQPLVKNPPKCPENTLSVHPFTGGESHAQERL-EHLITSGSITGYKSSRNGLM 296
Query: 332 GPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND--------------STYWVLFEL 377
G D+STK S +LA GSI+ R I+ + +E ++D TY V FEL
Sbjct: 297 GTDFSTKLSAYLALGSITSRQIHASMSVFENGSTSDDRYKDLEGYGNGENEGTYAVRFEL 356
Query: 378 MWRDYFRFISLKYGNSLFHLGGPR---KLEYKWS------------QDQKLFESWRDGCT 422
+WRDY R + K+G LF LGG + KWS Q Q++ E + +G T
Sbjct: 357 LWRDYMRLCTRKFGPQLFRLGGFKAEGNAHSKWSRLDSPKDGFSKEQIQEIVERFLNGTT 416
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
G IDA+ +E+ TG+ SNR RQ SFL + + IDWR+GAEW+E L+DYD SN+GN
Sbjct: 417 GMGFIDASQREIYHTGYTSNRARQNVASFLSKHLYIDWRIGAEWYECMLVDYDVSSNWGN 476
Query: 483 WTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
W Y AGVGNDPR DR F+ KQA +YD + EYV W+ +L+ +
Sbjct: 477 WQYVAGVGNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGV 520
>gi|86196738|gb|EAQ71376.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15]
Length = 793
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 171/568 (30%), Positives = 253/568 (44%), Gaps = 132/568 (23%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTYHF--------- 126
+ V I FR DLRV DN L + +LPVY H + +
Sbjct: 4 RNVLIYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKSPY 63
Query: 127 --------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH 178
G+ + G RA+F+ + + D++ +L + LL+R G ++++ L
Sbjct: 64 PEARSKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLD----- 118
Query: 179 AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH 238
+ A+ +TCS + E + + ++ +S+ + + +L Y +DD +
Sbjct: 119 GLKARGDTCSVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLV----DEKYFIDDRDLNF 174
Query: 239 SS---LPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPP---------------------- 272
+ LP ++T +RKS+E + R + P PP
Sbjct: 175 AEPQELPGIFTDYRKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYEG 234
Query: 273 -------SVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKE 325
V D+ P E H+ + F GGE+A R+ +Y ++K YK
Sbjct: 235 FETALLKPVKDFSGAPFPE----HAENATTAHPFKGGETAGQERL-QYVMSSGIIKDYKT 289
Query: 326 TRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA------------NDSTYWV 373
+RN ++GPD+STK S +LA G I+ R I+E + +YE A N +T V
Sbjct: 290 SRNGLIGPDFSTKLSAYLAQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSV 349
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRK-LEYKWSQDQKLFES----------WRD--- 419
ELMWRDY R + K L+ + GPR Y S ++ +S W+
Sbjct: 350 REELMWRDYMRLYARKIKEKLYSVEGPRGGRNYDSSNSGEVVDSGSPPIAKKVIWKTPDP 409
Query: 420 -----------------------GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDM 456
G TG LIDA+M+EL TG+ SNR RQ A +FL + +
Sbjct: 410 ATADPRQIPEPEKIKVCLDRFLAGTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHL 469
Query: 457 GIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYV 515
GIDWR GAEW+E L+DYD CSN+ NW Y AGVGNDPR E R F+ KQA +YD+EG YV
Sbjct: 470 GIDWRWGAEWYEMLLVDYDVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYV 529
Query: 516 AYWLPQL--------------KALPKER 529
W+P+L KA P+ER
Sbjct: 530 KMWVPELAPFGNKLELVFQACKATPQER 557
>gi|398404229|ref|XP_003853581.1| hypothetical protein MYCGRDRAFT_21368, partial [Zymoseptoria
tritici IPO323]
gi|339473463|gb|EGP88557.1| hypothetical protein MYCGRDRAFT_21368 [Zymoseptoria tritici IPO323]
Length = 570
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 155/466 (33%), Positives = 232/466 (49%), Gaps = 83/466 (17%)
Query: 127 GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF------GAHAV 180
GF + G LRA+F+ E + DL+++L +L++R G ++ + ++ + H V
Sbjct: 71 GFWRCGKLRAKFMAESVWDLKQDLQKDQSDLILRVGTVKDAVQAVLDGYRGRDDAEVHGV 130
Query: 181 YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMY----HLDDIPF 236
+ E EE E+ V+K +++ Q +W Y H D+PF
Sbjct: 131 WMTGEKSWEEQVEEQDVKKMVEKDGKEFQ-------------LWNDEKYFLTIHSRDLPF 177
Query: 237 -DHSSLPDVYTHFRKSIEA-----KCTVRGCIRIPS----------SFGPPPSVVDWGSV 280
D L DV+T FRK++E + + ++PS F P S+ D +
Sbjct: 178 KDARELNDVFTSFRKTVEPLREAPRQELPLAKKLPSLPDFIPEQAKPFAIPHSLKDTITA 237
Query: 281 ---PLIEQLEL-HSPKVSKGMR----FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLG 332
PL +L ++P + +G FVGG L R+ ++ + + YK+TRN +LG
Sbjct: 238 LNKPLDADQQLKNAPTLPEGAESAHPFVGGSKPGLDRI-KHLIESGAMTSYKDTRNGLLG 296
Query: 333 PDYSTKFSPWLASGSISPRYIYEEVKSYERERV------------ANDSTYWVLFELMWR 380
D+STK S WLA GSI+ R ++ + +E + N T V FEL+WR
Sbjct: 297 LDFSTKLSAWLALGSITARQVHWRLVDFEDGKGDVGKNAQGYGKGENKGTAAVRFELLWR 356
Query: 381 DYFRFISLKYGNSLFHLGGPRK----------LEYKWSQDQKLFESWRD----------- 419
DY R + K+G LF L G R+ Y S ++K + D
Sbjct: 357 DYMRLCTFKFGQKLFWLDGYRQDPSAANKFISSPYSHSTNKKNRQGVNDEDTRITVERFL 416
Query: 420 -GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
G TG LIDA+ +EL +TG+ SNR RQ S+L + + IDWR+GAEW+E L+DYD S
Sbjct: 417 CGRTGTGLIDASQRELYLTGWTSNRARQNVASYLAKRLEIDWRVGAEWYEMNLIDYDVSS 476
Query: 479 NYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLK 523
N+GNW Y +GVGNDPR D R F+ KQA +YD EG Y+ W+P+L+
Sbjct: 477 NWGNWQYVSGVGNDPRGDARVFNPVKQAVDYDPEGAYIRAWIPELR 522
>gi|440472686|gb|ELQ41536.1| cryptochrome DASH [Magnaporthe oryzae Y34]
gi|440482685|gb|ELQ63153.1| cryptochrome DASH [Magnaporthe oryzae P131]
Length = 770
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 171/568 (30%), Positives = 253/568 (44%), Gaps = 132/568 (23%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTYHF--------- 126
+ V I FR DLRV DN L + +LPVY H + +
Sbjct: 4 RNVLIYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKSPY 63
Query: 127 --------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH 178
G+ + G RA+F+ + + D++ +L + LL+R G ++++ L
Sbjct: 64 PEARSKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLD----- 118
Query: 179 AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH 238
+ A+ +TCS + E + + ++ +S+ + + +L Y +DD +
Sbjct: 119 GLKARGDTCSVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLV----DEKYFIDDRDLNF 174
Query: 239 SS---LPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPP---------------------- 272
+ LP ++T +RKS+E + R + P PP
Sbjct: 175 AEPQELPGIFTDYRKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYEG 234
Query: 273 -------SVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKE 325
V D+ P E H+ + F GGE+A R+ +Y ++K YK
Sbjct: 235 FETALLKPVKDFSGAPFPE----HAENATTAHPFKGGETAGQERL-QYVMSSGIIKDYKT 289
Query: 326 TRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA------------NDSTYWV 373
+RN ++GPD+STK S +LA G I+ R I+E + +YE A N +T V
Sbjct: 290 SRNGLIGPDFSTKLSAYLAQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSV 349
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRK-LEYKWSQDQKLFES----------WRD--- 419
ELMWRDY R + K L+ + GPR Y S ++ +S W+
Sbjct: 350 REELMWRDYMRLYARKIKEKLYSVEGPRGGRNYDSSNSGEVVDSGSPPIAKKVIWKTPDP 409
Query: 420 -----------------------GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDM 456
G TG LIDA+M+EL TG+ SNR RQ A +FL + +
Sbjct: 410 ATADPRQIPEPEKIKVCLDRFLAGTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHL 469
Query: 457 GIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYV 515
GIDWR GAEW+E L+DYD CSN+ NW Y AGVGNDPR E R F+ KQA +YD+EG YV
Sbjct: 470 GIDWRWGAEWYEMLLVDYDVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYV 529
Query: 516 AYWLPQL--------------KALPKER 529
W+P+L KA P+ER
Sbjct: 530 KMWVPELAPFGNKLELVFQACKATPQER 557
>gi|392541162|ref|ZP_10288299.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas piscicida JCM
20779]
Length = 434
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 145/449 (32%), Positives = 224/449 (49%), Gaps = 34/449 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V + F ND R+ DN AL + ++ +Y T + + F +E
Sbjct: 3 VGLYLFENDCRLSDNPALTTLASQVDTLICIYL-------PTVNLWTARKAQCSPSFTVE 55
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
C N+ LN L + ++ L + + + ++ R V
Sbjct: 56 CY-------RNQTLNALHQSLASQQQKLYLLRDTAQLKALTEIIHTQQVTHIGRAVHPGF 108
Query: 202 QQVVLSSQSNDKSTNHPQLKLI--WGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+ L + D N P ++ I + T++ D +P S LP +T FRK++E + +
Sbjct: 109 DEQKLWLKLQD---NFPHIQYISAYSNTLFEPDSLPISVSELPPSFTPFRKTVE-EIEPK 164
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
I P P V D + + + +S K V A + + +++ D
Sbjct: 165 LPIATPQLPPRPNRVSD------LAEFKANSSYSIK----VAAGEAQAQQQLQQYFQTDA 214
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
YKETRN + G +ST+FSP LA G+ISPR I + + +E++R AN+STYW+ FEL+W
Sbjct: 215 ALTYKETRNALFGEHFSTRFSPILAYGAISPRQIKQALTQFEQQRGANESTYWIWFELLW 274
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
R+YF + +LK+ ++LF G + K S + F W G T L++A M EL+ TG+
Sbjct: 275 REYFHWYALKHQHTLFSFSGVKAKTPKTSFYPERFLKWCQGRTPNALVNAIMHELTKTGW 334
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
+SNR RQIA S+ V ++ +DWR GA +FE L+DYD +N+GNW Y AGVG DPR R+F
Sbjct: 335 ISNRARQIAASYFVNELQLDWRYGAAFFEQHLIDYDVAANWGNWQYIAGVGADPRGGRHF 394
Query: 500 SIPKQAQNYDREGEYVAYW----LPQLKA 524
+I KQ +D +GEY+ W PQL +
Sbjct: 395 NITKQQALFDPDGEYIKLWQGEATPQLDS 423
>gi|452989984|gb|EME89739.1| hypothetical protein MYCFIDRAFT_202046 [Pseudocercospora fijiensis
CIRAD86]
Length = 611
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 160/473 (33%), Positives = 234/473 (49%), Gaps = 81/473 (17%)
Query: 127 GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA------HAV 180
GF + G RA+F E + D++K+L +L++R G ++ + S+ + + H +
Sbjct: 73 GFWRCGKRRAKFTAESVWDVKKDLNQLSSDLIVRVGSVKDAVQSILEGYRGRDDAEIHGL 132
Query: 181 YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD--IPF-D 237
+ E EE N E VR L + + + KL W Y +DD IP D
Sbjct: 133 WMTAEEGWEEKNEEEAVRTLL------------TKENKEFKL-WTDEKYFVDDRDIPTKD 179
Query: 238 HSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWGSVPL-----IEQL--ELH 289
LPDV+T FRK++E + R PS P P + + P +E++ LH
Sbjct: 180 ARDLPDVFTSFRKTVEPLRDAPRKAHPAPSGLPPLPDHIPEQAAPFAIPNSLEEVIAALH 239
Query: 290 SP-----------KVSKGMR----FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPD 334
P K+ +G F GG A RV ++ + + YK+TRN +LG D
Sbjct: 240 KPLDDSVGISDMPKLPQGAESAHPFTGGSKAGHERV-QHLIESGSMTSYKDTRNGLLGLD 298
Query: 335 YSTKFSPWLASGSISPRYIYEEVKSYERERVA------------NDSTYWVLFELMWRDY 382
+STK S WLA G +S R ++ ++ +E + + N T V FEL+WRDY
Sbjct: 299 FSTKLSAWLALGCVSARQVHWQLIDFEDGKGSVGKNADGYGKGENIGTAGVRFELLWRDY 358
Query: 383 FRFISLKYGNSLFHLGGPRKLE----------YKWSQDQK------------LFESWRDG 420
R + K+G LF+L G R + Y S ++K E + G
Sbjct: 359 MRLCTRKFGTRLFYLDGYRGDKQAKDKFISSPYTTSTNKKNTNGVNDKDTRITVERFLQG 418
Query: 421 CTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNY 480
TG LIDA+ +EL TG+ SNR RQ S+L + +GIDWR+GAEW+E L+DYD SN+
Sbjct: 419 RTGTGLIDASQRELFTTGWTSNRARQNVASYLSKHLGIDWRIGAEWYEQNLIDYDVSSNW 478
Query: 481 GNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNF 532
GNW Y AGVGNDPR D R F+ KQA +YD GEY W+P+L+ + +++
Sbjct: 479 GNWQYVAGVGNDPRGDARVFNPVKQAVDYDSNGEYCRTWIPELRHVGRDQHGL 531
>gi|449436487|ref|XP_004136024.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
gi|449498510|ref|XP_004160557.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
Length = 459
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 186/343 (54%), Gaps = 42/343 (12%)
Query: 78 NGKGV---AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
NG G+ IVWFRNDLR+ DNE L A D S VLPVYC DPR + GF KTG
Sbjct: 115 NGAGIRRATIVWFRNDLRLQDNECLNSAHDDSMSVLPVYCFDPRDYGKSSS-GFDKTGPF 173
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RA F+IE ++DLRKNL RG NL++R GKPE ++ LAK GA AVYA E +E+ E
Sbjct: 174 RAAFVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEMETE 233
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
+ +++ + ++K WG+T+YH+DD+PF +P + FR+ ++
Sbjct: 234 ERIESAMKE------------ENVEVKYFWGSTLYHIDDLPFKMEDMPSSHGAFREKVQG 281
Query: 255 KCTVRGCIRIPSSFGPPPSV--VDWGSVPLIEQLELHSPK-------VSKGMRFVGGESA 305
+VR I PS V+ G +P + L L+ P ++ VGGE+
Sbjct: 282 -LSVRKTIEALDKMKGLPSRGDVEPGDIPSLSDLGLNQPVAMSKEGWLAPNTSQVGGETE 340
Query: 306 ALGRVNEYFWKKDLLKVYKETRN----EMLGPDYSTKFSPWLASGSISPRYIYEEV-KSY 360
AL R+ +Y + + K T N + G +S K SPWL G ISPR +++E+ K+
Sbjct: 341 ALHRLQKY-AAECRAQPPKATNNGVQSSIYGATFSNKISPWLTMGCISPRSVFDELNKTV 399
Query: 361 ER-----ERVAND-----STYWVLFELMWRDYFRFISLKYGNS 393
R + ND T W++FEL+WRD+FRFI+ KY ++
Sbjct: 400 SRCISMPTPLKNDGGNGTGTNWLMFELLWRDFFRFITKKYNST 442
>gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group]
Length = 451
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 195/349 (55%), Gaps = 40/349 (11%)
Query: 70 YTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP 129
+ S A G+ +VWFR DLR+ D+E L A +S +LPV+ DPR + GF
Sbjct: 99 FPSGAPAAAGRRRTLVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPS-GFD 157
Query: 130 KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE 189
+TG RA FL++ +ADLR+ L RG +L++R G+PE +IP LA++ GA AV+A E +
Sbjct: 158 RTGPYRAGFLLDSVADLRRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVSRD 217
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
E E V K +++ + ++K WG+T+YHLDD+PF +P Y FR
Sbjct: 218 ECRAEEKVSKAVEKEGI------------EVKYFWGSTLYHLDDLPFRLEDMPSNYGGFR 265
Query: 250 KSIEAKCTVRGCIRIPSSFG--PPPSVVDWGSVPLIEQLELHSP-------KVSKGMRFV 300
++++ VR + P P +V++ G +P + +L L +P K + G +
Sbjct: 266 EAVKG-LDVRKVLDAPEEVKCVPMKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLI 324
Query: 301 GGESAALGRVNEYFWKKDLLKVYK----ETRNEMLGPDYSTKFSPWLASGSISPRYIYEE 356
GGE+ AL R+ + F + ++ K TR+ + G ++S K SPWLA+G +SPR++YEE
Sbjct: 325 GGEAEALERLKK-FASECCMQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEE 383
Query: 357 VKSYERERVANDS------------TYWVLFELMWRDYFRFISLKYGNS 393
+K + + + S T W++FEL+WRD+FRFI+ KY ++
Sbjct: 384 LKKHASRAIPSGSTPKNGDGTSDAGTNWLMFELLWRDFFRFITKKYSSA 432
>gi|237654599|ref|YP_002890913.1| cryptochrome, DASH family [Thauera sp. MZ1T]
gi|237625846|gb|ACR02536.1| cryptochrome, DASH family [Thauera sp. MZ1T]
Length = 515
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 299 FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK 358
F GGE AAL + YF D + YK TRN + G D+S+KFSPWLA G++S R ++
Sbjct: 256 FAGGERAALAHLARYF-AGDRPRHYKATRNGLSGVDFSSKFSPWLAQGALSARVALAALR 314
Query: 359 SYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWR 418
+E E+ +D +YW+ FEL+WRDYFR + L+ G L+ G + + + D F +WR
Sbjct: 315 RHEIEQGPSDGSYWLWFELLWRDYFRLLHLQQGRRLYRARGLNEGAAQPAHDAAAFAAWR 374
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
G TG+P IDA M+EL+ TG++SNR RQI S+L+ D+G DWR GA WFE L+DYD S
Sbjct: 375 VGGTGHPFIDAGMRELAATGWLSNRMRQIVASYLIHDLGCDWRAGAAWFEAQLVDYDVYS 434
Query: 479 NYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGS 536
N GNW Y AG G DPR R F +QA YD +G Y A W + P+ R + GGS
Sbjct: 435 NQGNWLYIAGRGTDPRGGRRFDPDRQAAMYDADGAYRALW---AEPEPRTRASAAGGS 489
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V I WFRNDLRV DN AL++A S+ +LPVYC DP T +GF + G R FL
Sbjct: 5 VVIFWFRNDLRVGDNLALVEACASAGRLLPVYCHDPSADAPT-RWGFVRRGPHRRAFLEA 63
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L DL L RG LL +G P ++P+LA++ GA V + EE + +R
Sbjct: 64 ALGDLDAALRARGSALLQLNGAPRAVLPALAEAVGAAVVVCEAIAAPEEEDELAALRAAG 123
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
+V K IW +T+ +PF + LP V+T FR+++E+
Sbjct: 124 LKV----------------KAIWQSTLLDPAALPFAAARLPKVFTAFRQAVES 160
>gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza
sativa Japonica Group]
gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group]
Length = 459
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 195/349 (55%), Gaps = 40/349 (11%)
Query: 70 YTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP 129
+ S A G+ +VWFR DLR+ D+E L A +S +LPV+ DPR + GF
Sbjct: 107 FPSGAPAAAGRRRTLVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPS-GFD 165
Query: 130 KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE 189
+TG RA FL++ +ADLR+ L RG +L++R G+PE +IP LA++ GA AV+A E +
Sbjct: 166 RTGPYRAGFLLDSVADLRRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVSRD 225
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
E E V K +++ + ++K WG+T+YHLDD+PF +P Y FR
Sbjct: 226 ECRAEEKVSKAVEKEGI------------EVKYFWGSTLYHLDDLPFRLEDMPSNYGGFR 273
Query: 250 KSIEAKCTVRGCIRIPSSFG--PPPSVVDWGSVPLIEQLELHSP-------KVSKGMRFV 300
++++ VR + P P +V++ G +P + +L L +P K + G +
Sbjct: 274 EAVKG-LDVRKVLDAPEEVKCVPMKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLI 332
Query: 301 GGESAALGRVNEYFWKKDLLKVYK----ETRNEMLGPDYSTKFSPWLASGSISPRYIYEE 356
GGE+ AL R+ + F + ++ K TR+ + G ++S K SPWLA+G +SPR++YEE
Sbjct: 333 GGEAEALERLKK-FASECCMQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEE 391
Query: 357 VKSYERERVANDS------------TYWVLFELMWRDYFRFISLKYGNS 393
+K + + + S T W++FEL+WRD+FRFI+ KY ++
Sbjct: 392 LKKHASRAIPSGSTPKNGDGTSDAGTNWLMFELLWRDFFRFITKKYSSA 440
>gi|350295611|gb|EGZ76588.1| cryptochrome [Neurospora tetrasperma FGSC 2509]
Length = 740
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 164/534 (30%), Positives = 243/534 (45%), Gaps = 108/534 (20%)
Query: 82 VAIVWFRNDLRVLDNE-----ALLKAWDSSEMVLPVYCV----------------DPRHS 120
V I R +LR+ DN A ++ +LPVY +P +
Sbjct: 6 VVIYAMRRELRLSDNPIFHHLANPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHPA 65
Query: 121 QTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH-- 178
+ G+ + G RA+FL E + DL+ +L + G +LL+R G +++I SL + A
Sbjct: 66 PKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIKSLVEGLKAKEC 125
Query: 179 ---AVYAQKETCSEELNVERLVRKNLQQVVLSSQ--SNDKSTNHPQLKLIWGTTMYHLDD 233
AV+ SEE + E+ V + + + ++K H + T + HL+D
Sbjct: 126 QVGAVWMTSHEGSEEKSDEKTVASFCAKSGIDFKLWDDEKYLIHDR-----DTGITHLND 180
Query: 234 IPFDHSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWGSVP----------- 281
LPDV+T +RK IE + R + +P G P+ +D +P
Sbjct: 181 -------LPDVFTTYRKQIEPLREKARKTLPVPEK-GALPAYLDTDMIPSQQAPFNIPGT 232
Query: 282 --------------LIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETR 327
++ L K F GGE++A R++ + +K YK++R
Sbjct: 233 CEELVDAVVRPVKNFLKDLPDFPEKAESSHPFRGGETSAHKRID-HLVMSGGMKSYKDSR 291
Query: 328 NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA------------NDSTYWVLF 375
N +LGPD+STK S +LA G ++ R I+ + +YE N T V
Sbjct: 292 NGLLGPDFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRM 351
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRD---------------- 419
EL+WRDY R KYG+ LF + G + + K + WR
Sbjct: 352 ELLWRDYMRLCHQKYGDKLFRVEGFNGKHTDYEGEDKKY-GWRTANTSIALPGQEPTPEK 410
Query: 420 ----------GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
G TG LIDA+ +EL TG+ SNR RQ SFL + + IDWR GAEW+E
Sbjct: 411 VSEILARFNAGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEM 470
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQL 522
L+DYD SN+ NW Y AGVGNDPR R F+ KQA +YD++G YV W+P++
Sbjct: 471 LLVDYDVSSNWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEV 524
>gi|346326523|gb|EGX96119.1| cryptochrome DASH [Cordyceps militaris CM01]
Length = 657
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 165/525 (31%), Positives = 252/525 (48%), Gaps = 92/525 (17%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTYHFG------FP-- 129
V + R DLR+ DN + +S+ +LPV + P +T+ FP
Sbjct: 6 VLVYLLRRDLRISDNPVFHRLTSTSDHGFTHLLPVVVLPPDQIETSGFLNPAQTSPFPLA 65
Query: 130 --------KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF---GAH 178
+ G RA+FL E + DL+ L++R L++R G P +I+ + + G
Sbjct: 66 KSKVGNFWRCGPHRAKFLAEAVWDLKDTLVSRHSGLIVRIGTPADIVRGIIQHLQTSGNA 125
Query: 179 AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH 238
AV A T + ER + ++ V+ ++N T P K Y++DD D
Sbjct: 126 AVSAVWMTDDVPIE-ERQQQADIS--VVCDRANIDFTLIPDEK-------YYIDDRDLDI 175
Query: 239 SS--LPDVYTHFRKSIEA----KCTVRGCIRIPSSFGPPPSVVDWGSVP----------- 281
++ LPDV+T +RK+ E V + P PP +++ S+P
Sbjct: 176 ATQELPDVFTTYRKAQEPLREKPRDVYPDSKSPLPPFPPEALIPPQSIPFQVPDNLDSFL 235
Query: 282 --LIEQLELH-------SPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLG 332
L++ L P F+GGE +A+ R+ ++ K Y +TRN +LG
Sbjct: 236 KCLVKPLAFELPNPPAPPPDAQSAHPFLGGEQSAMNRL-QHLVKSGAASSYSDTRNGLLG 294
Query: 333 PDYSTKFSPWLASGSISPRYIYEEVKSYE-------RERVA-----NDSTYWVLFELMWR 380
D+STK S +L G ++ R ++ E+ +E +E N+ T + EL+WR
Sbjct: 295 ADFSTKLSAFLCLGCLTARQVHGELVKFEDGTDSQYQEATGYGQGENNGTKAIRLELLWR 354
Query: 381 DYFRFISLKYGNSLFHLGGPRKLE---YKW--------SQDQ--------KLFESWRDGC 421
DY R + K+G LF G R+++ KW SQDQ ++ G
Sbjct: 355 DYMRLCTKKFGAKLFGASGFREVDGYSKKWKTANPATASQDQNPPPQRIAEMILRVLQGD 414
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG LIDA+ +EL +TG+ SNR RQ SF + + IDWR GAEW+E L+DYD SN+
Sbjct: 415 TGMGLIDASQRELFLTGYTSNRARQNVASFFAKHLDIDWRYGAEWYECMLVDYDASSNWA 474
Query: 482 NWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
NW Y AGVGNDPR D R F+ KQA +YD++G+YV W+P+++
Sbjct: 475 NWQYVAGVGNDPRGDARIFNPVKQAFDYDKQGDYVRTWIPEVRGF 519
>gi|336465318|gb|EGO53558.1| hypothetical protein NEUTE1DRAFT_92963 [Neurospora tetrasperma FGSC
2508]
Length = 740
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 164/534 (30%), Positives = 243/534 (45%), Gaps = 108/534 (20%)
Query: 82 VAIVWFRNDLRVLDNE-----ALLKAWDSSEMVLPVYCV----------------DPRHS 120
V I R +LR+ DN A ++ +LPVY +P +
Sbjct: 6 VVIYAMRRELRLSDNPIFHHLANPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHPA 65
Query: 121 QTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH-- 178
+ G+ + G RA+FL E + DL+ +L + G +LL+R G +++I SL + A
Sbjct: 66 PKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIKSLVEGLKAKEC 125
Query: 179 ---AVYAQKETCSEELNVERLVRKNLQQVVLSSQ--SNDKSTNHPQLKLIWGTTMYHLDD 233
AV+ SEE + E+ V + + + ++K H + T + HL+D
Sbjct: 126 QVGAVWMTSHEGSEEKSDEKTVASFCAKSGIDFKLWDDEKYLIHDR-----DTGITHLND 180
Query: 234 IPFDHSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWGSVP----------- 281
LPDV+T +RK IE + R + +P G P+ +D +P
Sbjct: 181 -------LPDVFTTYRKQIEPLREKARKTLPVPEK-GALPAYLDTDMIPSQQAPFNIPGT 232
Query: 282 --------------LIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETR 327
++ L K F GGE++A R++ + +K YK++R
Sbjct: 233 CEELVDAVVRPVKNFLKDLPDFPEKAESSHPFRGGETSAHKRID-HLVMSGGMKSYKDSR 291
Query: 328 NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA------------NDSTYWVLF 375
N +LGPD+STK S +LA G ++ R I+ + +YE N T V
Sbjct: 292 NGLLGPDFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRM 351
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRD---------------- 419
EL+WRDY R KYG+ LF + G + + K + WR
Sbjct: 352 ELLWRDYMRLCHQKYGDKLFRVEGFNGKHTDYEGEDKKY-GWRTANTSIALPGQEPTPEK 410
Query: 420 ----------GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
G TG LIDA+ +EL TG+ SNR RQ SFL + + IDWR GAEW+E
Sbjct: 411 VSEILARFNAGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEM 470
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQL 522
L+DYD SN+ NW Y AGVGNDPR R F+ KQA +YD++G YV W+P++
Sbjct: 471 LLVDYDVSSNWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEV 524
>gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis]
gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis]
Length = 458
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 180/335 (53%), Gaps = 34/335 (10%)
Query: 78 NGKGV---AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
N G+ +IVWFRNDLRV DNE L A + S VLPVYC DPR + GF KTG
Sbjct: 120 NAAGIRRASIVWFRNDLRVHDNECLNSANNESMSVLPVYCFDPREYGKSSS-GFDKTGPY 178
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RA FLIE + DLRKNL +RG +L++R GKPE ++ LAK+ GA AVYA KE +E+ E
Sbjct: 179 RASFLIESVTDLRKNLQDRGSDLVVRVGKPETVLVELAKAIGADAVYAHKEVSHDEVKAE 238
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
+ ++ + ++K WG+T+YH+DD+PF +P Y FR+ +
Sbjct: 239 DKIEAAMKDEGV------------EVKYFWGSTLYHVDDLPFKLEDMPSNYGGFREKVHG 286
Query: 255 KCTVRGCIRIPSSFGPPPSV--VDWGSVPLIEQLELHSP---KVSKGMRFVGGESAALGR 309
VR I PS V+ G +P + L L+ K + VGGE+ AL R
Sbjct: 287 -LEVRKTIAALDQLKGKPSRGDVEPGEIPSLLDLGLNPTQGGKPAATASMVGGETEALQR 345
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ ++ + +++ + G ++S K SPWL G ISPR +++E+K ++ S
Sbjct: 346 LKKFAAECQAQPPKGGSQDSIYGANFSCKISPWLTMGCISPRSMFDELKKTATRTISAAS 405
Query: 370 ------------TYWVLFELMWRDYFRFISLKYGN 392
W++FEL+WRD+FRFI+ KY +
Sbjct: 406 KGNDGGSPPDTGMNWLMFELLWRDFFRFITKKYSS 440
>gi|374334090|ref|YP_005090777.1| deoxyribodipyrimidine photolyase [Oceanimonas sp. GK1]
gi|372983777|gb|AEY00027.1| deoxyribodipyrimidine photolyase [Oceanimonas sp. GK1]
Length = 449
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 138/447 (30%), Positives = 222/447 (49%), Gaps = 38/447 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W RNDLR LD+ A +A + + P H TT G + GA +A +L + L
Sbjct: 3 LLWLRNDLR-LDDHAGWQALADYQGKTAAVFILPAHWLTTDAAGLHRLGAAKAAYLQQAL 61
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADL L L LL G+P E++ + + V + E + RL ++
Sbjct: 62 ADLSARLAPFPLTLL--QGEPVELLLAWHRLQPFELVTHAAQAPEEAGWLARLCDAGVKV 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE--------AK 255
+ +Q ++ + I P +T FRK +E A
Sbjct: 120 HTVEAQP-----------------LFEPEQIAPLFKKFPASFTGFRKKVEKVPAWPVPAP 162
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
R+ ++ P + +DW P EL P + GGE+ A + Y +
Sbjct: 163 QAAADVSRLRAAACPLTTGIDWPVTPA----ELAHPA------WQGGETHARAWLQHYLF 212
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ L YK +RN++ G +S+ S LA G +SPR +++++ YE++ +++ +YW+ F
Sbjct: 213 EQRALAHYKASRNDLAGRYFSSHLSAALAWGCLSPREVWQQILEYEQQWGSDEHSYWLRF 272
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WR+YF + +G+ LF GG + + +++W + TG+P+IDA +KEL
Sbjct: 273 ELLWREYFHWSLRVHGSQLFAAGGLTGKAGPGVFNAEYWQAWCEARTGWPMIDAGLKELM 332
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TGF SNR RQ S + ++G+DW +GA +FE LLD+D SN+GNW Y AG G+DPR
Sbjct: 333 ATGFCSNRLRQNLASCFIHELGLDWCLGARFFEQHLLDFDVASNWGNWAYIAGAGHDPRH 392
Query: 496 DRYFSIPKQAQNYDREGEYVAYWLPQL 522
R F+ +Q + YD E ++ WLP+L
Sbjct: 393 GRLFNPHRQWRQYDPELTHLHQWLPEL 419
>gi|15226633|ref|NP_182281.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
gi|116248577|sp|Q8LB72.2|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2
gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana]
gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana]
gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana]
gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
Length = 447
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 180/325 (55%), Gaps = 31/325 (9%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
WFRNDLRV DNE L A D VLPVYC DPR + GF KTG RAQFLIE +++
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSS-GFDKTGPFRAQFLIESVSE 178
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LRKNL RG NL++R GKPE ++ LAK GA AVYA +E +E+ E + +++
Sbjct: 179 LRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEG 238
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
+ ++K WG+T+YHLDD+PF LP Y F+ ++ K +R I
Sbjct: 239 V------------EVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQ-KLEIRKTIAAL 285
Query: 266 SSFGPPPSV--VDWGSVPLIEQLELH-SPKVSKGMR--FVGGESAALGRVNEYF--WKKD 318
PS V+ G +P + L + +P+ S+ + VGGE+ AL R+ + +
Sbjct: 286 DQLKSLPSRGDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQAR 345
Query: 319 LLKV-YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE---------RERVAND 368
L K K N + G ++S K SPWLA GSISPR +++E+K R +
Sbjct: 346 LSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDT 405
Query: 369 STYWVLFELMWRDYFRFISLKYGNS 393
W+++EL+WRD+FRFI+ KY ++
Sbjct: 406 GLNWLMYELLWRDFFRFITKKYSSA 430
>gi|395003805|ref|ZP_10387913.1| cryptochrome, DASH family [Acidovorax sp. CF316]
gi|394318288|gb|EJE54737.1| cryptochrome, DASH family [Acidovorax sp. CF316]
Length = 452
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 137/218 (62%), Gaps = 2/218 (0%)
Query: 301 GGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY 360
GGE+AAL V +Y YK TRN + G YS+KFSPWLA+G++S R+ ++ +
Sbjct: 234 GGETAALAHVQQYL-ASGQPHSYKATRNGLTGLGYSSKFSPWLATGALSARHAMAALRRF 292
Query: 361 ERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDG 420
E AN+ TYW+ FEL+WRDYFR + L++G +L+ G + F W G
Sbjct: 293 EAAHGANEGTYWLWFELLWRDYFRLLHLQHGRTLYRARGLSAQPLA-PHNAAGFARWCAG 351
Query: 421 CTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNY 480
TG PL+DA ++EL+ TG++SNR RQ+A S+L+ D+ DWR GA WFE+ LLDYDP SN
Sbjct: 352 QTGEPLVDAALRELAATGYLSNRLRQVAASYLIHDLQGDWRAGAAWFESQLLDYDPYSNQ 411
Query: 481 GNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYW 518
GNW Y AG G DPR R F+ KQAQ +D +G Y W
Sbjct: 412 GNWLYIAGRGTDPRGGRRFNPAKQAQEHDADGSYRRLW 449
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 109 VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEII 168
++PV+C P +TT +GF + G R F L DL + G L G P ++
Sbjct: 34 LVPVHC-QPVADETT-PWGFARRGPHRRAFEGAALRDLAAGMAGLGNPLRQCQGLPAAVL 91
Query: 169 PSLAKSFGAHAVYAQKETC-SEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTT 227
P LA++ GA V ++ E+ V L L Q++ +W ++
Sbjct: 92 PVLARAVGATTVVCEEIAAPQEQAEVAALRAAGL-----------------QVQTVWHSS 134
Query: 228 MYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ D+P+ +LP V+T FR+++E
Sbjct: 135 LLQPCDLPWPVGALPGVFTTFRQAVE 160
>gi|212275814|ref|NP_001131008.1| uncharacterized LOC100192113 [Zea mays]
gi|194690696|gb|ACF79432.1| unknown [Zea mays]
gi|194701496|gb|ACF84832.1| unknown [Zea mays]
gi|414866740|tpg|DAA45297.1| TPA: photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 197/347 (56%), Gaps = 38/347 (10%)
Query: 70 YTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP 129
+ S A G+ +VWFR DLR+ D+E A +S +LPV+ DPR + GF
Sbjct: 96 FPSGAPAAAGRRRTLVWFRADLRLHDHEPFHAAAGASSSLLPVFVFDPRDFGKSPS-GFD 154
Query: 130 KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE 189
+TG RA FL++ +ADLR++L RG +L++R G+PE +IP LA++ GA AVYA E +
Sbjct: 155 RTGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRD 214
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
E+ E V+K +++ + +K WG+T+YH++D+PF +P Y FR
Sbjct: 215 EVRAEERVQKAVEKEGI------------NVKYFWGSTLYHVEDLPFRLEDMPSNYGGFR 262
Query: 250 KSIEAKCTVRGCIRIPSSFG--PPPSVVDWGSVPLIEQLELHSP-------KVSKGMRFV 300
++++ VR + P P +V++ G +P + +L L +P K + G +
Sbjct: 263 EAVKG-LEVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLI 321
Query: 301 GGESAALGRVNEYFWKKDLL--KVYKE-TRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
GGE+ AL R+ ++ + + KV K T++ + G ++S K SPWLA+G +SPR++YEE+
Sbjct: 322 GGETEALERLKKFAAECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEEL 381
Query: 358 KSYERERVA-------NDSTY-----WVLFELMWRDYFRFISLKYGN 392
K + + + ND T W++FEL+WRD+FRFI+ KY +
Sbjct: 382 KKHATKAIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFRFITKKYSS 428
>gi|332141438|ref|YP_004427176.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551460|gb|AEA98178.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 273
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 161/280 (57%), Gaps = 11/280 (3%)
Query: 244 VYTHFRKSIEAKCT----VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF 299
++ R+ +E CT + ++P F P +D I +EL PK S F
Sbjct: 1 MFQSVRRKVEKHCTPLPVLERIAQLPDGFMPN---ID---KQYILDIELSLPKPSPS-SF 53
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
+GGESAAL + Y + YKETRN + STK S WLA+GS+S R + +V+
Sbjct: 54 IGGESAALNHLETYLFDWKAAATYKETRNTLDTWKDSTKLSAWLANGSLSAREVIRQVQR 113
Query: 360 YERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRD 419
+E+ NDSTYWV FEL+WR++F ++ KYG F G + + D + F W
Sbjct: 114 FEQTIEKNDSTYWVYFELLWREFFHWLQCKYGAKWFRFSGIQGRKPTTCHDPETFSRWCK 173
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TGY ++DA M++L+ TG+MSNRGRQ+ S V ++ DWR GA WFE L+DYD SN
Sbjct: 174 GETGYRIVDACMRQLAETGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYDVGSN 233
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWL 519
+GNW Y AGVG+DPR R F++ KQ + YD +G + WL
Sbjct: 234 WGNWLYLAGVGSDPRGHRQFNLQKQTEIYDPDGRFRKAWL 273
>gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
Length = 447
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 178/325 (54%), Gaps = 31/325 (9%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
WFRNDLRV DNE L A D VLPVYC DPR + GF KTG RAQFLIE +++
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSS-GFDKTGPFRAQFLIESVSE 178
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LRKNL RG NL++R GKPE ++ LAK GA AVYA +E +E+ E + +++
Sbjct: 179 LRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEG 238
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
+ ++K WG+T+YHLDD+PF LP Y F+ ++ K +R I
Sbjct: 239 V------------EVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQ-KLEIRKTIAAL 285
Query: 266 SSFGPPPSV--VDWGSVPLIEQLELH-SPKVSKGMR--FVGGESAALGRVNEYF---WKK 317
PS V+ G +P + L + +P+ S+ + VGGE+ AL R+ + +
Sbjct: 286 DQLKSLPSRGDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQXR 345
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE---------RERVAND 368
K N + G ++S K SPWLA GSISPR +++E+K R +
Sbjct: 346 XSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDT 405
Query: 369 STYWVLFELMWRDYFRFISLKYGNS 393
W+++EL+WRD+FRFI+ KY ++
Sbjct: 406 GLNWLMYELLWRDFFRFITKKYSSA 430
>gi|393764280|ref|ZP_10352892.1| deoxyribodipyrimidine photolyase [Alishewanella agri BL06]
gi|392604910|gb|EIW87809.1| deoxyribodipyrimidine photolyase [Alishewanella agri BL06]
Length = 452
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 231/458 (50%), Gaps = 41/458 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTY---HFGFPKTGALRAQF 138
++V LRV DN L +A + ++ + Q Y +G ++ LR +
Sbjct: 2 TSLVLLNGCLRVDDNPLLSQARGKAAALVII-------DQQAYFGRQYGLFRSNLLRLRA 54
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
++ + L + L R + L+IR G + LA GA + A + T +E
Sbjct: 55 HLQAIQHLAQQLAQRQIGLIIRFGDTHSQLCELALKLGAEQLLASEPTAPDEY------- 107
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ LQ + S + L+LI G ++ P D ++L D +T FRK +E V
Sbjct: 108 RALQHLPASVK----------LQLIDGNSLLSQQLRP-DLATLSDRFTSFRKKLEPLLLV 156
Query: 259 RGC---IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+++ P V +++Q L + E +A R++ + W
Sbjct: 157 TAAEPEHTRAANWLSPDQVAGLSQQSVLQQW-LGQTAATSWREGCWDEGSAHARLHYFIW 215
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ + YK++RN + G DY++ FS L+ G++S R +++++ +E++ ANDSTYW+ F
Sbjct: 216 QGQHILHYKDSRNALCGTDYASFFSTPLSLGTLSVRRCWQQIEQFEQQVKANDSTYWLKF 275
Query: 376 ELMWRDYFRFISLKYGNSLFH---LGGPRKLE---YKWSQDQKLFESWRDGCTGYPLIDA 429
EL+WR++FR+ KY F + GP +Q Q+ F +W G TG P IDA
Sbjct: 276 ELLWREFFRWQMRKYQARWFSKNGIAGPADFSSPRLTATQKQR-FAAWCAGDTGVPFIDA 334
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
NM+ L+ TG MSNRGRQ A S+L+ D+ +DWR+GA +FE LLDYD SN+GNW Y AGV
Sbjct: 335 NMQLLNQTGLMSNRGRQNAASYLMYDLELDWRLGAAYFEQRLLDYDCASNWGNWAYIAGV 394
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
GN E R F+ KQA YD ++V LPQ+ A K
Sbjct: 395 GNS--EARAFNPIKQALWYDPNADFVRQKLPQISAAGK 430
>gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 196/347 (56%), Gaps = 38/347 (10%)
Query: 70 YTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP 129
+ S A G+ +VWFR DLR+ D+E A +S +LPV+ DPR + GF
Sbjct: 96 FPSGAPAAAGRRRTLVWFRADLRLHDHEPFHAAAGASSSLLPVFVFDPRDFGKSPS-GFD 154
Query: 130 KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE 189
+TG RA FL++ +ADLR++L RG +L++R G PE +IP LA++ GA AVYA E +
Sbjct: 155 RTGPYRANFLLDSVADLRRSLRARGGDLVVRVGMPEVVIPELARAAGAEAVYAHGEVSRD 214
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
E+ E V+K +++ + +K WG+T+YH++D+PF +P Y FR
Sbjct: 215 EVRAEERVQKAVEKEGI------------NVKYFWGSTLYHVEDLPFRLEDMPSNYGGFR 262
Query: 250 KSIEAKCTVRGCIRIPSSFG--PPPSVVDWGSVPLIEQLELHSP-------KVSKGMRFV 300
++++ VR + P P +V++ G +P + +L L +P K + G +
Sbjct: 263 EAVKG-LEVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLI 321
Query: 301 GGESAALGRVNEYFWKKDLL--KVYKE-TRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
GGE+ AL R+ ++ + + KV K T++ + G ++S K SPWLA+G +SPR++YEE+
Sbjct: 322 GGETEALERLKKFAAECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEEL 381
Query: 358 KSYERERVA-------NDSTY-----WVLFELMWRDYFRFISLKYGN 392
K + + + ND T W++FEL+WRD+FRFI+ KY +
Sbjct: 382 KKHATKAIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFRFITKKYSS 428
>gi|409203889|ref|ZP_11232092.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas flavipulchra
JG1]
Length = 434
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 227/447 (50%), Gaps = 46/447 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V + F ND R+ DN AL K + ++ +Y T + + F +E
Sbjct: 3 VGLYLFENDCRLSDNPALTKLASLVDTLICIYL-------PTVNLWTARKAQCSTSFAVE 55
Query: 142 CLADLRKNLMNRGLN------LLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER 195
C + N +++ L ++R+ + + + ++ Q+ T ++ R
Sbjct: 56 CYRNQTLNALHQSLTSQQQKLYMLRNTAQLKALTEI--------IHTQQVT-----HIGR 102
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLI--WGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ L + D N P ++ + + +T++ D +P S LP +T FRK++E
Sbjct: 103 AAHPGFDEQKLWLKLQD---NFPYIQYVSAYSSTLFEPDTLPLKISELPPSFTPFRKAVE 159
Query: 254 AKCTVRGCIRIPSSFGPP-PSVVDWGSVPLIEQLELHSPKVSKGMRF-VGGESAALGRVN 311
+ I ++ PP P+ V L+L K + V A +
Sbjct: 160 E---IEPKSPIATATLPPRPNRV----------LDLAEFKANSSYNIKVAAGEAQAQQQL 206
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
+ +++ D YKETRN + G +ST+FSP LASG+IS R I + + +E +R AN+STY
Sbjct: 207 QQYFQTDAALTYKETRNALFGDHFSTRFSPILASGAISSRQIKQALTQFELQRGANESTY 266
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
W+ FEL+WR+YF + +LK+ ++LF G + K S + F W G T L++A M
Sbjct: 267 WIWFELLWREYFHWYALKHQHTLFCFSGVKAKTPKTSFYPERFLKWCQGRTPSALVNAIM 326
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
EL+ TG++SNR RQIA S+ V ++ +DWR GA +FE L+DYD +N+GNW Y AGVG
Sbjct: 327 HELTKTGWISNRARQIAASYCVNELQLDWRYGAAFFEQHLIDYDVAANWGNWQYIAGVGA 386
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYW 518
DPR R+F+I KQ +D +GEY+ W
Sbjct: 387 DPRGGRHFNITKQQALFDPDGEYIKLW 413
>gi|356535153|ref|XP_003536113.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 440
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 184/332 (55%), Gaps = 38/332 (11%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
WFRNDLR+LDNE L A + S VLPVYC DP + GF KTG RA FLI+ ++D
Sbjct: 106 WFRNDLRLLDNECLTAANNDSLSVLPVYCFDPSDYGKSAS-GFDKTGPYRAAFLIDSVSD 164
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LR++L RG +L++R GKPE ++ LAK+ GA AVYA +E +E E V +++
Sbjct: 165 LRRSLQARGSDLVVRVGKPETVLVELAKAVGADAVYAHREVSHDEAKAEEKVEAAMKE-- 222
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
+ ++K WG+T+YH+DD+PF +P Y FR ++ K VR I
Sbjct: 223 ----------ENVEVKYFWGSTLYHVDDLPFQLEDMPSNYGGFRDRVQ-KLEVRKTIEAL 271
Query: 266 SSFGPPPSVVDW--GSVPLIEQLELH-SPKVSKGMRF------VGGESAALGRVNEYFWK 316
PS D+ G +P + L L+ S +S+ +F +GGE+ AL R+ ++ +
Sbjct: 272 DHLKGMPSRGDFELGEIPSLMDLGLNPSATMSQDGKFGANASMIGGETEALQRLKKFAAE 331
Query: 317 --KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA-----ND- 368
K +K+ + G ++S K SPWLA G +SPR +YEE+K ++ ND
Sbjct: 332 CAAQPNKGFKDGTQSIYGANFSCKISPWLAMGCLSPRTMYEELKKTTSRAISASADKNDG 391
Query: 369 -------STYWVLFELMWRDYFRFISLKYGNS 393
T W++FEL+WRD+FRFI+ KY ++
Sbjct: 392 GNGSSRNGTNWLMFELLWRDFFRFITKKYSSA 423
>gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
Length = 448
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 178/331 (53%), Gaps = 43/331 (12%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
WFRNDLRV DNE L A D VLPVYC DPR + GF KTG RAQFLIE +++
Sbjct: 121 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSS-GFDKTGPFRAQFLIESVSE 179
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LRKNL RG NL++R GKPE ++ LAK GA AVYA +E +E+ E + +++
Sbjct: 180 LRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIESAMKEEG 239
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI--- 262
+ ++K WG+T+YHLDD+PF LP Y F+ + K +R I
Sbjct: 240 V------------EVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVH-KLEIRKTIAAL 286
Query: 263 ----RIPS----SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
+PS G PS++D G P + P + VGGE+ AL R+ +
Sbjct: 287 DQLKSLPSRGDVELGDIPSLLDLGISPTARTSQEGKPTM------VGGETEALTRLKSFA 340
Query: 315 --WKKDLLKV-YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK---------SYER 362
+ L K K N + G ++S K SPWLA GSISPR +++E+K + R
Sbjct: 341 ADCQARLSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTTTTPR 400
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNS 393
+ W+++EL+WRD+FRFI+ KY ++
Sbjct: 401 NGPGDTGLNWLMYELLWRDFFRFITKKYSSA 431
>gi|396463599|ref|XP_003836410.1| hypothetical protein LEMA_P039460.1 [Leptosphaeria maculans JN3]
gi|312212963|emb|CBX93045.1| hypothetical protein LEMA_P039460.1 [Leptosphaeria maculans JN3]
Length = 989
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 227/478 (47%), Gaps = 77/478 (16%)
Query: 130 KTGALRAQFLIECLADLRKNL--MNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKET- 186
+TG R +F+ E DL++ L + G L +R G +++ ++ + + K T
Sbjct: 408 RTGPHRIRFMAEGAWDLKRKLESLKCGSGLEMRVGAIPDVVSNILEWYSKQEDSKGKVTG 467
Query: 187 ---CSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH---SS 240
++ E+ K L+ + + + K ++ Y++DD + S
Sbjct: 468 VWMTDDDGTEEKSDEKTLKSLTEKHRVDFK---------VYRDEKYYVDDRDLSYKNISE 518
Query: 241 LPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWGSVPLI--EQLE-----LHSP- 291
LP+VYT +RK++E + R P+ P P + P + L+ L SP
Sbjct: 519 LPNVYTSYRKALEPLRDRPRNEFPAPTQLPPLPEHIPPQQRPFTIPDNLDALLQALSSPL 578
Query: 292 ----------------KVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDY 335
V F GGE++AL RV+ + + YKETRN MLG D+
Sbjct: 579 EKDPTYTLSEPPKYPTDVQSAHPFAGGETSALNRVS-HLISSGAMSSYKETRNGMLGLDF 637
Query: 336 STKFSPWLASGSISPRYIYEEVKSYERERVA-----------NDSTYWVLFELMWRDYFR 384
STK S +LA G ++ R+++ + +E R N T V FEL+WRDY R
Sbjct: 638 STKLSAFLAQGHLTARHVHWAMFDFEEGRGPGKDVKGYGQGENAGTAAVRFELLWRDYMR 697
Query: 385 FISLKYGNSLFHL---------GGPRKLEYKWS-------------QDQKLFESWRDGCT 422
K+G+ +FHL G R KW Q + F +R G T
Sbjct: 698 LCMRKFGDRMFHLYGIQNQDAKDGNRPQMKKWKKLDGSGGAGDDPKQTLEAFTRFRSGRT 757
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
G LIDA+ +EL +TG+ SNR RQ SFL + IDWR+GAEW+E L DYD SN+GN
Sbjct: 758 GVGLIDASNRELFVTGYTSNRARQNVASFLASHLNIDWRIGAEWYECFLTDYDCASNWGN 817
Query: 483 WTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQ 540
W Y AGVGNDPR+ R F+ KQA +YD +GEY+ W+P+L+ + R G ++Q
Sbjct: 818 WQYVAGVGNDPRQGRVFNPVKQAFDYDPKGEYIKAWVPELRGIKLTRTVGNGKEEVDQ 875
>gi|357112286|ref|XP_003557940.1| PREDICTED: blue-light photoreceptor PHR2-like [Brachypodium
distachyon]
Length = 447
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 194/347 (55%), Gaps = 37/347 (10%)
Query: 70 YTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP 129
+ S A G+ +VWFR DLR+ D+E L A +S +LPV+ DPR + GF
Sbjct: 96 FPSGAPGAAGRRRTLVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPS-GFD 154
Query: 130 KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE 189
+TG RA FL++ +ADLR++L RG +L++R G+PE +IP LA++ GA AVYA E +
Sbjct: 155 RTGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRD 214
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
E E V + +++ + ++K WG+T+YH+DD+PF +P Y FR
Sbjct: 215 ECRTEDKVSQAIKKEGV------------EVKYFWGSTLYHMDDLPFRLEDMPSNYGGFR 262
Query: 250 KSIEAKCTVRGCIRIPSSFG--PPPSVVDWGSVPLIEQLELHSP-------KVSKGMRFV 300
++++ VR + P P +V++ G +P + +L L +P K + G +
Sbjct: 263 EAVKG-LEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAVGSTLI 321
Query: 301 GGESAALGRVNEYFWKKDLL---KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
GGE+ AL R+ ++ + + TR+ + G ++S K SPWLA+G +SPR++YEE+
Sbjct: 322 GGEAEALERLKKFAAECCMQPNKSAKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEEL 381
Query: 358 KSYER-----------ERVANDSTYWVLFELMWRDYFRFISLKYGNS 393
K R + ++ T W++FEL+WRD+FRF++ KY ++
Sbjct: 382 KKTIRAIPSGSAPKNGDGTSDAGTNWLMFELLWRDFFRFVTKKYSSA 428
>gi|225437398|ref|XP_002270248.1| PREDICTED: blue-light photoreceptor PHR2 [Vitis vinifera]
Length = 454
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 182/341 (53%), Gaps = 40/341 (11%)
Query: 78 NGKGV---AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
N G+ IVWFRNDLRV DNE L A + S +LPVYC DPR + GF KTG
Sbjct: 112 NAAGIRRSCIVWFRNDLRVHDNECLNSASNESMSMLPVYCFDPRDYGKSSS-GFDKTGPY 170
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RA FLIE ++DLR+NL RG +L++R GKPE ++ LAK+ GA A+YA +E +E+ E
Sbjct: 171 RASFLIESVSDLRQNLQKRGSDLVVRIGKPETVLVELAKAVGADAIYAHREVSHDEVKGE 230
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF------ 248
+ +++ + +LK WG+T+YH+DD+PF +P Y F
Sbjct: 231 EKIEAAMKEEGV------------ELKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKG 278
Query: 249 ---RKSIEAKCTVRGC-IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGES 304
RK+I +RG R G PS++D G P L + + G VGGE+
Sbjct: 279 LEIRKTIATLDQLRGLPARGDVEAGEIPSLLDLGLSP-SATLPQNGMSTANG-SLVGGET 336
Query: 305 AALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERER 364
AL R+ ++ + + + G ++S K SPWLA G +SPR +++E+K
Sbjct: 337 EALQRLKKFAAECQAQPPKGAANDSIYGANFSCKISPWLAMGCLSPRSMFDEIKKSASRT 396
Query: 365 VANDSTY------------WVLFELMWRDYFRFISLKYGNS 393
++ ++ W++FELMWRD+FRFI+ KY ++
Sbjct: 397 ISASTSKDGGSGQSDTGMNWLMFELMWRDFFRFITKKYSSA 437
>gi|356500345|ref|XP_003518993.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 428
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 178/332 (53%), Gaps = 38/332 (11%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
WFRNDLR+LDNE L A + S VLPVYC DP + GF KTG RA FLI+ ++D
Sbjct: 94 WFRNDLRLLDNECLTAANNESLSVLPVYCFDPADYGKSAS-GFDKTGPYRAAFLIDSVSD 152
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LR+NL RG +L++R GKPE ++ LAK+ GA AVYA +E +E E V +++
Sbjct: 153 LRRNLQARGSDLVVRVGKPEAVLVELAKAVGADAVYAHREVSHDEAKAEERVEAAMKE-- 210
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
+ ++K WG+T+YH+DD+PF +P Y FR ++ K VR I
Sbjct: 211 ----------ENVEVKYFWGSTLYHVDDLPFQLEDMPSNYGGFRDRVQ-KLEVRKTIEAL 259
Query: 266 SSFGPPPSV--VDWGSVPLIEQLEL-------HSPKVSKGMRFVGGESAALGRVNEYFWK 316
PS V+ G +P + L L + K VGGE+ AL ++ ++ +
Sbjct: 260 DQLKGMPSRGDVEPGEIPSLMDLGLNPSATMSQNGKCVANASMVGGETEALQKLKKFAAE 319
Query: 317 --KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK---------SYERERV 365
K +K+ + G ++S K SPWLA G +SPR +YEE+K S R
Sbjct: 320 CAAQPHKGFKDGTQSIYGANFSCKISPWLAMGCLSPRTMYEELKKTAGRVISASSNRNDG 379
Query: 366 ANDS----TYWVLFELMWRDYFRFISLKYGNS 393
N S T W++FEL+WRD+FRFI+ KY +
Sbjct: 380 GNGSSRTGTNWLMFELLWRDFFRFITKKYSTA 411
>gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
Length = 447
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/347 (34%), Positives = 195/347 (56%), Gaps = 38/347 (10%)
Query: 70 YTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP 129
+ S A G+ +VWFR DLR+ D+E A +S +LPV+ DPR + GF
Sbjct: 97 FPSGAPAAAGRRRTLVWFRADLRLHDHEPFHAAAGASSSLLPVFVFDPRDFGKSPS-GFD 155
Query: 130 KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE 189
+TG RA FL++ +ADLR++L RG +L++R G+PE +IP LA++ GA AVYA E +
Sbjct: 156 RTGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRD 215
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
E+ E V+K +++ + +K WG+T+YH++D+PF +P Y FR
Sbjct: 216 EVRAEERVQKAVEKEGI------------NVKYFWGSTLYHVEDLPFHLEDMPSNYGGFR 263
Query: 250 KSIEAKCTVRGCIRIPSSFG--PPPSVVDWGSVPLIEQLELHSP-------KVSKGMRFV 300
++++ VR + P P +V++ G +P + +L L +P K + G +
Sbjct: 264 EAVKG-LEVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMAQDSKPAVGSTLI 322
Query: 301 GGESAALGRVNEYFWKKDLL--KVYKE-TRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
GGE+ AL R+ ++ + + K K T++ + G ++S K SPWLA+G +SPR++YEE+
Sbjct: 323 GGETEALERLKKFAVECSMQPNKADKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEEL 382
Query: 358 KSYERERVA-------NDSTY-----WVLFELMWRDYFRFISLKYGN 392
K + + ND T W++FEL+WRD+FRFI+ KY +
Sbjct: 383 KKHATRAIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFRFITKKYSS 429
>gi|408389293|gb|EKJ68755.1| hypothetical protein FPSE_11060 [Fusarium pseudograminearum CS3096]
Length = 703
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 239/521 (45%), Gaps = 83/521 (15%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSE---MVLPVYCVDPRHSQTT----------YH 125
G + + R DLR +DN L S +LP+Y + P +T+ Y
Sbjct: 3 GNKLLVYLLRRDLRAIDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYP 62
Query: 126 FG------FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA 179
F + G LRA+F EC+ D++KN + G +LIR GK ++++ L KS
Sbjct: 63 LAKSQVGRFWRCGPLRAKFQAECIWDVKKNFEDIGSGMLIRIGKFDDVLKHLIKSLNEDH 122
Query: 180 VYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF--- 236
+EE + E L +N V S + KL W Y +DD
Sbjct: 123 QSIDTVWMTEEPSKEELDDQNAVASVCSKEGIG-------FKL-WHDEKYFIDDRDNGLK 174
Query: 237 DHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDW---GSVPL--------IEQ 285
D PDV+T +RK+ E G PS W P E+
Sbjct: 175 DPQDTPDVFTTYRKTQEPLRERPRPPLPRPQAGSLPSFPSWIPPQQAPFRIPNNYDEFER 234
Query: 286 LELHS---------PKVSKGMR----FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLG 332
L L P +G + F GGE+ A R+ + K + Y+ETRN +LG
Sbjct: 235 LLLEPVKAPIISDPPPFPEGAKSAHPFKGGETPAWDRL-YHLIKSGAMTTYQETRNGLLG 293
Query: 333 PDYSTKFSPWLASGSISPRYIYEEVKSYERE------------RVANDSTYWVLFELMWR 380
+YSTK S +LA G+I+ R I+ E+ +E + N+ + V FEL+WR
Sbjct: 294 TEYSTKLSAFLAMGTITARSIHAELVKFEDGSEESYSTGFGFGKGENEGSRAVRFELLWR 353
Query: 381 DYFRFISLKYGNSLFHLGGPR----------KLEYKW-SQD----QKLFESWRDGCTGYP 425
DY R + K+G LF + G + KW S D + + + W G TG
Sbjct: 354 DYMRLCTKKFGARLFKVDGFKGASGASGANGNYSKKWLSWDDPGVKDMIDRWIRGTTGMG 413
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
L+DA+ +E+ +G+ SNR RQ S+ + +GIDWR+ A ++E L+DYD SN+GN+ Y
Sbjct: 414 LVDASQREILRSGYTSNRARQNVASYFAKSLGIDWRIAASFYEYALVDYDVNSNWGNYAY 473
Query: 486 GAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
AGVGNDPR + R F+ KQA +YD GEY WLP+ + +
Sbjct: 474 VAGVGNDPRGQSRSFNQVKQAFDYDIGGEYCKTWLPETRNI 514
>gi|408373114|ref|ZP_11170812.1| DASH family cryptochrome [Alcanivorax hongdengensis A-11-3]
gi|407766952|gb|EKF75391.1| DASH family cryptochrome [Alcanivorax hongdengensis A-11-3]
Length = 505
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 218/478 (45%), Gaps = 59/478 (12%)
Query: 79 GKG---VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALR 135
GKG + ++WFR DLRV D L +A VL +Y V P GF + G +
Sbjct: 28 GKGAGVITVIWFRQDLRVQDQPLLRRAAALGAPVLTLY-VLPERWLAAGEEGFDRLGPAK 86
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER 195
+ FL+E + L L GL L+ G P ++ V A+ + E+ +
Sbjct: 87 SCFLLESVQALADGLNALGLTLVTACGGPASLLAHWQAQAPLQVVTAEADAPEEQAGLAA 146
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
L R + ++S+ T+ D P SSL ++ FR+ +EA
Sbjct: 147 LRRAGIPVHEVASR-----------------TLLCGDTRP-GASSLCGSFSRFRRRVEAD 188
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGS--------------------VPLIEQLELHSPKVSK 295
G PP G PL ++
Sbjct: 189 -------------GGPPVAQPEGPPPALAAAAPLPLPAGTESALAPLQQRCRHWLRNHRD 235
Query: 296 GMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE 355
GGE A + +Y + + Y TRN+++G +S++ S LA G +S R ++
Sbjct: 236 YFSLPGGEPVARRWLEQYLFSDRHIAHYNATRNQLIGSGFSSRLSAALAWGCLSVRRVWH 295
Query: 356 EVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG----PRKLEYKWSQDQ 411
+ YER A++ +YW+ FEL+WR++F + ++G ++F G P + + Q
Sbjct: 296 AILEYERRHGASEHSYWLRFELLWREFFHWSLREHGTAVFRYQGLSPSPDFPPLEEACHQ 355
Query: 412 KLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCL 471
++ W TG P IDAN++EL TG++SNRGRQ SF V DMG+DWR GA WFE L
Sbjct: 356 GYWQRWCQARTGLPFIDANLRELMATGYLSNRGRQNLASFFVHDMGLDWRRGARWFEHHL 415
Query: 472 LDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKER 529
+D+D SN+GNW Y AG G+D R R FS +Q +D ++ +WLP L+ L E+
Sbjct: 416 VDHDVASNWGNWAYIAGKGHDARGGRRFSPTRQWWRHDPHAAHLHHWLPPLRRLTPEQ 473
>gi|388494660|gb|AFK35396.1| unknown [Medicago truncatula]
Length = 456
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 195/352 (55%), Gaps = 53/352 (15%)
Query: 71 TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPK 130
++ AL+R AIVWFRNDLRV DNEAL A + S VLPVYC DP + GF K
Sbjct: 112 SAAALRR----TAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSS-GFDK 166
Query: 131 TGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEE 190
TG RA FLIE ++DLRKNL RG +L++R GKPE ++ LAK GA AVY +E +E
Sbjct: 167 TGPYRASFLIESISDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDE 226
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF-- 248
+ +E + +++ + ++K WG+T+YH++D+PF +P Y F
Sbjct: 227 VKMEEKIEGKMKE------------ENVEVKYFWGSTLYHVEDLPFGLEDMPSNYGGFRD 274
Query: 249 -------RKSIEAKCTVRGCIRIPS----SFGPPPSVVDWGSVP--LIEQLELHSPKVSK 295
RK+IEA ++G +PS G P+++D G P ++ Q P S
Sbjct: 275 RVQKLEIRKTIEALDQLKG---LPSRGDVQLGDIPTLMDLGLNPSAIMSQDGKQVPNSS- 330
Query: 296 GMRFVGGESAALGRVNEYFWKKDLL--KVYKE-TRNEMLGPDYSTKFSPWLASGSISPRY 352
GGE+ AL R+ + + + K +K+ ++ + G ++S K SPWLA G +SPR
Sbjct: 331 ---MTGGETEALQRLKRFAAECEAQSNKGFKDGAQDSIYGANFSCKISPWLAMGCLSPRA 387
Query: 353 IYEEVKSYERERVA-----ND------STYWVLFELMWRDYFRFISLKYGNS 393
+++E+K V+ ND T W++FEL+WRD+FRFI+ KY ++
Sbjct: 388 MFDELKKTASSAVSASSSKNDGGSSKTGTNWLMFELLWRDFFRFITKKYSST 439
>gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa]
Length = 457
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 176/327 (53%), Gaps = 32/327 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
IVWFRNDLRV DNE L A + S VLPVYC DPR + GF KTG RA FLIE
Sbjct: 125 ACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSS-GFDKTGPYRANFLIE 183
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
++DLRKNL RG +L++R G+PE ++ LAK+ GA AVYA +E +E+ E + + +
Sbjct: 184 SVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEVKAEEKIEELM 243
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + ++K WG+T+YHLDD+PF +P Y F++ ++ +R
Sbjct: 244 KDEGV------------EVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQG-LEIRKT 290
Query: 262 IRIPSSFGPPPSV--VDWGSVPLIEQLELHSP---KVSKGMRFVGGESAALGRVNEYFWK 316
I PS V+ G +P + L L+ K + VGGE+ AL R+N++ +
Sbjct: 291 IETLDQLKGLPSRGDVEPGDIPNLLDLGLNPAQDGKAAANASMVGGETEALQRLNKFAAE 350
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY----- 371
+ + G ++S K SPWL G +S R +++E+K V+ S +
Sbjct: 351 CQAQPPKGGSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTVSAASNHNSGGS 410
Query: 372 --------WVLFELMWRDYFRFISLKY 390
W++FELMWRD+FRFI+ KY
Sbjct: 411 SSPGAGMNWLMFELMWRDFFRFITKKY 437
>gi|357442473|ref|XP_003591514.1| DNA photolyase protein [Medicago truncatula]
gi|355480562|gb|AES61765.1| DNA photolyase protein [Medicago truncatula]
Length = 456
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 193/346 (55%), Gaps = 41/346 (11%)
Query: 71 TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPK 130
++ AL+R AIVWFRNDLRV DNEAL A + S VLPVYC DP + GF K
Sbjct: 112 SAAALRR----TAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSS-GFDK 166
Query: 131 TGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEE 190
TG RA FLIE ++DLRKNL RG +L++R GKPE ++ LAK GA AVY +E +E
Sbjct: 167 TGPYRASFLIESVSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDE 226
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 250
+ +E + +++ + ++K WG+T+YH++D+PF +P Y FR
Sbjct: 227 VKMEEKIEGKMKE------------ENVEVKYFWGSTLYHVEDLPFGLEDMPSNYGGFRD 274
Query: 251 SIEAKCTVRGCIRIPSSFGPPPSV--VDWGSVPLIEQLELH-SPKVSKGMRFV------G 301
++ K +R I PS V G +P + L L+ S +S+ + V G
Sbjct: 275 RVQ-KLEIRKTIEALDQLKGLPSRGDVQLGDIPTLMDLGLNPSATMSQDGKQVPNSSMTG 333
Query: 302 GESAALGRVNEYFWKKDLL--KVYKE-TRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK 358
GE+ AL R+ + + + K +K+ ++ + G ++S K SPWLA G +SPR +++E+K
Sbjct: 334 GETEALQRLKRFAAECEAQSNKGFKDGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELK 393
Query: 359 SYERERVA-----ND------STYWVLFELMWRDYFRFISLKYGNS 393
V+ ND T W++FEL+WRD+FRFI+ KY ++
Sbjct: 394 KTASSAVSASSSKNDGGSSKTGTNWLMFELLWRDFFRFITKKYSST 439
>gi|94501553|ref|ZP_01308071.1| Deoxyribodipyrimidine photolyase [Bermanella marisrubri]
gi|94426371|gb|EAT11361.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
Length = 440
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 145/432 (33%), Positives = 217/432 (50%), Gaps = 24/432 (5%)
Query: 87 FRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADL 146
F DLR+ D+ L +A D SE + VY + P + F G R +FL + L DL
Sbjct: 11 FSKDLRLHDHPGLKQANDLSERLACVYFLSPYEFEPK-SFSVCPMGKQRYEFLRQGLCDL 69
Query: 147 RKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVL 206
R +L + L H E++ P L + + + E + R QV +
Sbjct: 70 RNSLNDIDHEL---HVFQEKVAPGLERIIEQNKI--------EAVFASRCAGTYENQVWV 118
Query: 207 SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPS 266
S Q K + ++ L+ T++++D P S + ++ FR+ E I S
Sbjct: 119 SLQ---KRQPNLKIHLVDSHTLFNIDQ-PDLSKSFYNSFSQFRRQAEKWPQPLPMATILS 174
Query: 267 SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKET 326
P D + L + S + GGE L + +YF L+ YK T
Sbjct: 175 LPAAMPVATDSARINLDD-------NRSSALCITGGEQKGLEHLYDYFNGSYALQ-YKAT 226
Query: 327 RNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFI 386
RN + G + S+KFS WLA GS+S R I +E++ +E N+ST + EL+WR++F++
Sbjct: 227 RNALDGWENSSKFSYWLAQGSLSVRLILQELRQFESLHSNNESTEHLYMELLWREFFQWY 286
Query: 387 SLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQ 446
S YG LF+ G +K + + F W +G T +PL++A M +L TG+MSNRGRQ
Sbjct: 287 SHFYGKQLFYFSGIQKKRPLTTFYPQAFRMWLEGHTEWPLVNACMNQLRTTGYMSNRGRQ 346
Query: 447 IACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQ 506
I S L+ ++ +DWR GA+ FE LLDYD +N+GNW Y AGVG DPR R+F+I KQ Q
Sbjct: 347 IVASCLLNELKVDWRAGAQAFEHYLLDYDVAANWGNWQYIAGVGADPRGGRHFNIEKQTQ 406
Query: 507 NYDREGEYVAYW 518
YD + ++ W
Sbjct: 407 LYDPDNLFIDKW 418
>gi|149279053|ref|ZP_01885187.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
sp. BAL39]
gi|149230332|gb|EDM35717.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
sp. BAL39]
Length = 410
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 203/410 (49%), Gaps = 22/410 (5%)
Query: 99 LLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLL 158
L++A S+ +LPVY DP + T F KTG R +FL+E +A LR + G +LL
Sbjct: 2 LVEAISKSDSILPVYFFDPYYFDPT-QFNTVKTGMSRTKFLLESVAALRASFQQLGGDLL 60
Query: 159 IRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHP 218
+ +GKPEE++ L + VY +E EE + V L ++ ++
Sbjct: 61 VLYGKPEELMAGLVDQYEISEVYHHREVAPEETQISTKVEDLLWKLKIN----------- 109
Query: 219 QLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWG 278
L+ G T+Y+ +D+PF +PDV+ F+K E V+ C P + DWG
Sbjct: 110 -LRHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTERDAMVKSCFLSPDHIEFVENE-DWG 167
Query: 279 SVPLIEQLELHS---PKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDY 335
+P ++ L P +R GGE A L +++ + + + +
Sbjct: 168 QLPGLKDLGFEEETFPGEEDALR--GGEEAGLQHLSDLLLEGAAVYQKYTAKQSAEREAF 225
Query: 336 STKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLF 395
S++ S WL+ G +SPR +Y VK E + +N + +L L+WRDY+RF+ K+G F
Sbjct: 226 SSRLSGWLSLGCLSPRMVYWMVKEAESKFGSNANFNQMLLGLLWRDYYRFMFKKHGTRFF 285
Query: 396 HLGGPRKLEYKWSQD--QKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLV 453
+ ++ S D + + W+ TGYPLID M EL+ TG++S GR + ++LV
Sbjct: 286 K-EPDFESDFFSSVDPANSVLKKWKTADTGYPLIDNYMTELNDTGYISYTGRLVVATYLV 344
Query: 454 RDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPK 503
+ + W GA +FE L+DY P SN+GNW AGVG D + I K
Sbjct: 345 HFLKVHWTNGAVYFEEKLIDYAPASNWGNWANVAGVGKDGKSKNGIDIDK 394
>gi|453088659|gb|EMF16699.1| cryptochrome [Mycosphaerella populorum SO2202]
Length = 626
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 170/533 (31%), Positives = 248/533 (46%), Gaps = 106/533 (19%)
Query: 82 VAIVWFRNDLRVLDNE-----ALLKAWDSSEM--VLPVYCVDPRHSQTTYHFG------- 127
V I R DLR+ DN A L A VLP+Y + +
Sbjct: 7 VLIYLLRRDLRLADNPIFNELAQLNAQSQKPFTHVLPIYIFAAEQVEISGFLSSNQDKSP 66
Query: 128 ----------FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF-- 175
F + G+ R +F+ E + DL+++L +L+IR G ++ + SL ++
Sbjct: 67 YKEARSRVGKFWRCGSHRVKFVAESVWDLKQDLRKIQSDLVIRVGSVKDAVQSLVDAYRE 126
Query: 176 ----GAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHL 231
H ++ E EE N E+ V+ L++ N + KL W Y +
Sbjct: 127 REDAEIHGLWMTSEEGWEEQNEEKAVKTILEE------------NGKEFKL-WTDEKYFI 173
Query: 232 DD--IPFDHS-SLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWGSVPLI---- 283
DD +PF + LPDV+T +RK +E + R + P P P + + P
Sbjct: 174 DDRDVPFKNPRDLPDVFTTYRKMVEPLRDGPRKELAKPDQMLPLPDHIPAQARPFTIPST 233
Query: 284 --EQLEL-------------HSPKVSKGMR----FVGGESAALGRVNEYFWKKDLLKVYK 324
E L P+VS+ + FVGG ++ R+ + + YK
Sbjct: 234 YDEVLAALTKPLGKQPIDVPEPPQVSQNAKSAHPFVGGSTSGHERI-RHLIDSGSMTSYK 292
Query: 325 ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA------------NDSTYW 372
+TRN +LG D+STK S WLA G IS R ++ ++ +E + A + +
Sbjct: 293 DTRNGLLGLDFSTKLSAWLAMGCISSRQVHWQLVDFEDGKGACGKSANGYGKGESKGSAA 352
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPR----------KLEYKWSQDQK---------- 412
V FEL+WRDY R + K+G LF L G + Y S ++K
Sbjct: 353 VRFELLWRDYMRLCTRKFGMRLFFLSGYKGDHEAANRWISSPYTPSTNKKNSHGVHDDAT 412
Query: 413 --LFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETC 470
+ E + G TG LIDA+ +EL TG+ SNR RQ S+L + +GIDWR+GAEW+E
Sbjct: 413 RTVVERFLAGRTGTGLIDASQRELWFTGWTSNRARQNVASYLAKHLGIDWRLGAEWYEQN 472
Query: 471 LLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQL 522
L+DYD SN+GNW Y AGVGNDPR D R F+ KQA +YD+ GEYV W+P+L
Sbjct: 473 LIDYDVSSNWGNWQYVAGVGNDPRGDARVFNPVKQAVDYDKNGEYVRTWVPEL 525
>gi|380473816|emb|CCF46101.1| DASH family cryptochrome [Colletotrichum higginsianum]
Length = 711
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 168/532 (31%), Positives = 246/532 (46%), Gaps = 101/532 (18%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTYHF----------- 126
+ I R+DLR+ DN L ++E VLPVY V P H F
Sbjct: 6 ILIYLLRHDLRIADNPVLHHLATTAEHGFTHVLPVY-VFPAHQIEISGFLRENAKSPYPE 64
Query: 127 ------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG---- 176
F + G R +F+ E + +L+++L G L +R G+ ++ L + F
Sbjct: 65 ARSQIGKFWRCGHHRTKFVAESVWNLKESLEKVGSGLALRAGRFGDVAEDLLQGFADKQQ 124
Query: 177 -AHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIP 235
A++ E EE E V ++ ++ ++ W Y +DD
Sbjct: 125 KVGAIWMTSEEAIEEKKDEEDVSTACKKHGVAFKT-------------WLDEKYFIDDRD 171
Query: 236 FDHSS---LPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPP-----------------SV 274
S L DV+T FRK+ E + R + PS PP S
Sbjct: 172 LHFKSPDELADVFTAFRKTQEPLREKPRPTLPPPSKGSLPPYPDQDTLPPQRSPFDIPST 231
Query: 275 VDWGSVPLIEQL------ELHSPKVSKGMR-FVGGESAALGRVNEYFWKKDLLKVYKETR 327
D L++ L E P+ ++ + F GGE AL R+ ++ K + YK+TR
Sbjct: 232 FDALESALLKPLTSPFSDEPEFPENAQSVHPFQGGEGVALQRL-DHLVKTGAMSSYKDTR 290
Query: 328 NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE------------RVANDSTYWVLF 375
N +LG D+STK S +L+ G ++ R I+E + +E + ND T V F
Sbjct: 291 NGLLGVDFSTKLSAYLSFGCLTSRQIHEAMVRFEDGQDDKFKGTPGYGKGENDGTKAVRF 350
Query: 376 ELMWRDYFRFISLKYGNSLFHLGG------PR----KLEYKWSQD---------QKLFES 416
EL+WRDY R + K+ LF + G P+ E+ S D Q++ +
Sbjct: 351 ELLWRDYMRLCTRKFQEKLFRVTGFKGDTTPKWKSADPEHVVSDDNMGTSVKKIQQILQR 410
Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDP 476
+ +G TG LIDA+ +EL TG+ SNR RQ SFL + +GIDWR GAEW+E L+DYD
Sbjct: 411 FLNGTTGMGLIDASQRELWHTGYTSNRARQNVASFLTKHLGIDWRYGAEWYEYLLVDYDV 470
Query: 477 CSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
SN+ NW Y AGVGNDPR D R F+ KQA +YD+ GEYV W+ + + + K
Sbjct: 471 SSNWSNWQYVAGVGNDPRGDNRIFNPVKQAFDYDKSGEYVKAWVVETREIEK 522
>gi|384252420|gb|EIE25896.1| cryptochrome [Coccomyxa subellipsoidea C-169]
Length = 524
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 153/499 (30%), Positives = 228/499 (45%), Gaps = 63/499 (12%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSE--MVLPVYCVDPRHSQTTYHF----GFPKTGA 133
K AIVW R+D+R+ D+ L+ A + VLPVYC+ P Q + G P G
Sbjct: 7 KKAAIVWIRSDIRLADHAPLVSACSLPQTCFVLPVYCLSPALLQPRCNIPGLNGIPVLGP 66
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA--------HAVYAQKE 185
R +FL+E L L++ L RG L +P E IP+L + H + +
Sbjct: 67 HRGRFLLEALQALQQQLAARGSKLHFAVSRPAEEIPALVRGLAGQVSHVDLYHYLQIGRH 126
Query: 186 TCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVY 245
+ EE V ++ L+S+ + WG T+YH H++L +
Sbjct: 127 SVEEEDAVADAFHAACKESQLTSE----------VHHFWGHTLYH------PHNALAALK 170
Query: 246 THFRKS-----IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHS---------P 291
R S +E+ VR + P P P + + PL ++ P
Sbjct: 171 PPARDSNSQLAVESHGFVREPLPAPDQIPPFPDSIP-SAAPLPKKASTDRTDADAIAALP 229
Query: 292 KVSKGMRFVGGESAAL----GRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGS 347
+S + GE++ G + + +K+TR G D S K S +LA+G
Sbjct: 230 SISVAQEGMPGEASVSRNDSGAADGNLSAPAPIDSFKDTRMLAGGVDNSAKLSAYLAAGC 289
Query: 348 ISPRYIYEEVKSYERERVANDSTYWVLFELMWR-------------DYFRFISLKYGNSL 394
+SPR +Y E++ + + W++ L+ R D+F F +LK G+ L
Sbjct: 290 LSPRMVYAEIQKARNQSGGDSGHSWLIMHLIIRQAPPLQASISLPRDFFLFTALKEGDKL 349
Query: 395 FHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR 454
G R +W + F W G TG+P +DA M+EL+ TG+MSNRGRQ SFL +
Sbjct: 350 ERPEGIRGEARQWRHCDEEFLRWCRGRTGFPFVDACMRELAATGYMSNRGRQNVSSFLCK 409
Query: 455 DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEY 514
MG W++GA FET L+D+D N NW Y AGVGNDPR DR F Q YD E ++
Sbjct: 410 AMGHSWQVGAALFETLLVDHDWAVNTVNWAYFAGVGNDPR-DRIFRTVSQGMTYDPEAQH 468
Query: 515 VAYWLPQLKALPKERRNFP 533
+ W+P+L LP + + P
Sbjct: 469 INSWVPELSNLPGDFAHRP 487
>gi|361125657|gb|EHK97690.1| putative cryptochrome DASH, mitochondrial [Glarea lozoyensis 74030]
Length = 652
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 174/525 (33%), Positives = 242/525 (46%), Gaps = 98/525 (18%)
Query: 82 VAIVWFRNDLRVLDNEALLK-AWDSSE---MVLPVYCVD----------PRHSQTTYHF- 126
V I R DLRV DN L A D S +LP+Y P F
Sbjct: 10 VLIYLLRKDLRVSDNPVLHALAKDQSHGFTHLLPLYVFQAQQIEVKGFIPEGEAAKSPFP 69
Query: 127 -------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPE----EIIPSLAKSF 175
GF +TG R +F+ E + D++KNL G +L IR G + +I + +
Sbjct: 70 EARSQVAGFWRTGPHRVKFVSESVWDMKKNLQQLGSDLCIRAGMADGVLRHVIDEINQKS 129
Query: 176 G--AHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD 233
G AV+ E EE ER +R NL ++ T+ ++ Y +DD
Sbjct: 130 GIKVGAVWMTAEEGVEEKREERAIR-NL--------CDETDTDFK----LFVDEKYFIDD 176
Query: 234 IPFDHSSLPDVYTHFRKSIEA-KCTVRGCIRIP------------------SSFGPPPSV 274
P D P+V+T +R +E + R + P S F P +
Sbjct: 177 DPQD---APNVFTEYRNKVEPLREAPRAVLATPEKDSLPQYPEDSQVPAQESPFTIPDNA 233
Query: 275 VDWGSV---PLIEQLELHSPK----VSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETR 327
+ PL + L PK V F GGE+AA R+ E+ YK++R
Sbjct: 234 EGLLAALMKPLTDPLIKDPPKDPGDVQSAHPFKGGETAAQDRL-EHIIASGSASSYKDSR 292
Query: 328 NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE-------------RERVANDSTYWVL 374
N +LG D+STK S +L G I+ R I+ + ++E + N T +
Sbjct: 293 NGLLGLDFSTKLSSYLVYGCITSRQIHTALLAFEDGTDDGKWKGVTGHGKGENPGTKSIR 352
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLE-------------YKWSQDQKLFESWRDGC 421
FEL+WRDY R ++K+G LF L G R Y Q Q++ E + +G
Sbjct: 353 FELLWRDYMRLCNMKFGPKLFLLSGFRDENPARWATPGRPSHGYSKEQIQEMVERYLNGT 412
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG LIDA+ +EL TG+ SNR RQ + SFL + + IDWR+GAEW+E+ L DYD SN+G
Sbjct: 413 TGMGLIDASQRELFHTGYTSNRARQNSASFLAKHLWIDWRIGAEWYESMLADYDVSSNWG 472
Query: 482 NWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
NW Y AGVGNDPR E R F+ KQA +YD YV W+P+L+ L
Sbjct: 473 NWQYLAGVGNDPRGEARVFNPVKQAYDYDPAAAYVKAWVPELRGL 517
>gi|46129334|ref|XP_389028.1| hypothetical protein FG08852.1 [Gibberella zeae PH-1]
gi|97047717|sp|Q4I1Q6.1|CRYD_GIBZE RecName: Full=Putative cryptochrome DASH
Length = 678
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 156/518 (30%), Positives = 236/518 (45%), Gaps = 93/518 (17%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSE---MVLPVYCVDPRHSQTT----------YH 125
G + + R DLR DN L S +LP+Y + P +T+ Y
Sbjct: 3 GNKLLVYLLRRDLRATDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYP 62
Query: 126 FG------FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH- 178
F + G LRA+F EC+ D++KN N G +LIR GK ++++ L KS
Sbjct: 63 LAKSQVGRFWRCGPLRAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLNEDH 122
Query: 179 ----AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD- 233
V+ +E EEL+ Q ++S + + +W Y +D+
Sbjct: 123 QSIDTVWMTEEPSKEELD---------DQTAVASVCSKEGIGFK----LWHDEKYFIDEK 169
Query: 234 -------------IPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVV-DWGS 279
SLP F I + + RIP + ++ +
Sbjct: 170 TQEPLRERPRPPLPRPQAGSLPS----FPSWIPPQ---QAPFRIPDDYDEFERLLLEPVK 222
Query: 280 VPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKF 339
P+I F GGE+ A R+ + K + Y+ETRN +LG +YSTK
Sbjct: 223 APIISDPPQFPEGAKSAHPFKGGETPAWDRLY-HLIKSGAMTTYQETRNGLLGTEYSTKL 281
Query: 340 SPWLASGSISPRYIYEEV--------KSYERE----RVANDSTYWVLFELMWRDYFRFIS 387
S +LA G+I+ R I+ E+ +SY R + N+ T V FEL+WRDY R +
Sbjct: 282 SAFLAMGTITARSIHAELVKFEDGSEESYSRGFGFGKGENEGTRAVRFELLWRDYMRLCT 341
Query: 388 LKYGNSLFHL----GGPRKLEYKWSQDQK----------------LFESWRDGCTGYPLI 427
K+ LF + G KW D++ + + W G TG L+
Sbjct: 342 FKFRTRLFKIDGFKGASGNYTKKWLTDREEDAEPDQNPTPAQVKDMIDRWIRGTTGMGLV 401
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA+ +EL +TG+ SNR RQ S+L + +GIDWR+GAE++E L+DYD SN+GNW Y A
Sbjct: 402 DASQRELQLTGYTSNRARQNVASYLTKSLGIDWRLGAEYYEQSLIDYDTHSNWGNWQYQA 461
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
GNDPR R F+ KQA +YD++G + W+ ++K++
Sbjct: 462 SCGNDPRS-RSFNQVKQAFDYDQDGRFTRTWVNEVKSI 498
>gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa]
gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa]
Length = 471
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 179/343 (52%), Gaps = 50/343 (14%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
IVWFRNDLRV DNE L A + S VLPVYC DPR + GF KTG RA FLIE
Sbjct: 125 ACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSS-GFDKTGPYRANFLIE 183
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
++DLRKNL RG +L++R G+PE ++ LAK+ GA AVYA +E +E+ E + + +
Sbjct: 184 SVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEVKAEEKIEELM 243
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF---------RKSI 252
+ + ++K WG+T+YHLDD+PF +P Y F RK+I
Sbjct: 244 KDEGV------------EVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTI 291
Query: 253 EAKCTVRGCIRIPS----SFGPPPSVVDWGSVPL--------IEQLELHSPKVSKGMRFV 300
E ++G +PS G P+++D G P + + K + V
Sbjct: 292 ETLDQLKG---LPSRGDVEPGDIPNLLDLGLNPAQGTCCIVSLNTCQSQDGKAAANASMV 348
Query: 301 GGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY 360
GGE+ AL R+N++ + + + G ++S K SPWL G +S R +++E+K
Sbjct: 349 GGETEALQRLNKFAAECQAQPPKGGSHESIYGANFSCKISPWLTMGCVSARSMFDELKKT 408
Query: 361 ERERVANDSTY-------------WVLFELMWRDYFRFISLKY 390
++ S + W++FELMWRD+FRFI+ KY
Sbjct: 409 ATRTISAASNHNSGGSSSPGAGMNWLMFELMWRDFFRFITKKY 451
>gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa]
gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 177/332 (53%), Gaps = 37/332 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
IVWFRNDLRV DNE L A + S VLPVYC DPR + GF KTG RA FLIE
Sbjct: 86 ACIVWFRNDLRVHDNECLNSASNDSMSVLPVYCFDPRDYGKSSS-GFDKTGPYRANFLIE 144
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
++DLRKNL RG +L++R G+PE ++ LAK+ GA AVYA +E +E+ E + + +
Sbjct: 145 SVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEVKAEDKIEEVM 204
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + ++K WG+T+YHLDD+PF +P Y F++ ++ +R
Sbjct: 205 KDEGV------------EVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQV-LEIRKT 251
Query: 262 IRIPSSFGPPPSV--VDWGSVPLIEQLELHSP---KVSKGMRFVGGESAALGRVNEYF-- 314
+ PS V+ G +P + L L+ K + VGGE+ AL R+ ++
Sbjct: 252 VETLDELKGLPSRGDVEPGDIPNLLDLGLNPAQDGKATANASMVGGEAEALQRLQKFAAE 311
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA-------- 366
+ K + + + G ++S K SPWL G ISPR +++E+K ++
Sbjct: 312 CQAQPPKGTNGSHDSIYGANFSCKISPWLTVGCISPRSMFDELKKTAARTISGASNCGGG 371
Query: 367 --------NDSTYWVLFELMWRDYFRFISLKY 390
+ W++FEL+WRD+FRFI+ KY
Sbjct: 372 GGGGSGSPDTGMNWLMFELLWRDFFRFITKKY 403
>gi|336314972|ref|ZP_08569886.1| deoxyribodipyrimidine photolyase [Rheinheimera sp. A13L]
gi|335880799|gb|EGM78684.1| deoxyribodipyrimidine photolyase [Rheinheimera sp. A13L]
Length = 447
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 140/442 (31%), Positives = 230/442 (52%), Gaps = 35/442 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+V F +R DN LL + ++ V ++P +G + R Q ++
Sbjct: 4 ALVLFNQAMRWHDN-LLLSEQAEFDQLIAVVVLNP-DDYLGRQYGIQRASIQRLQAQLKL 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L + ++ + L IR G + + LA+ +GA + A + T E+ ++L++ L+
Sbjct: 62 LLNWQQQWQQKQQVLHIRIGPTDLCLQQLAQLYGADTLIAAEPTAPEQ--YQQLLQSGLK 119
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ S + P D ++LP ++ FR+ E V+
Sbjct: 120 LKLFDINSLLQHQLRP------------------DLATLPKSFSAFRREREPDLWVQPPE 161
Query: 263 R--IPSSFGPPPSV-VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
+ + + F PS+ VD ++ I + H P + + E+A L R+ ++ W
Sbjct: 162 QHAVTTQFHADPSLAVDTTALDFINRY--HQPTAA-----LFNEAAGLERLMQFIWHHQA 214
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
+ YK+ RN + G S+ +S +LA+G++SP Y +++V +E+++VAN+STYW+ FEL+W
Sbjct: 215 VIDYKQNRNALDGDWNSSLWSFYLANGTLSPCYTWQQVLVFEQKQVANESTYWLRFELLW 274
Query: 380 RDYFRFISLKYGNSLFHLGGPRK-LEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
R+YFR+ ++G + F R L++ Q FE W G TG P +DAN++ L TG
Sbjct: 275 REYFRWQMRQHGRAWFSKNAFRPPLDFSSPQADPRFELWCKGETGLPFVDANLRMLLHTG 334
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ S+L+ ++ DWR+GA +FE LLDYD SN+ NW Y AGVGN R
Sbjct: 335 WMSNRGRQNVASYLIFELQQDWRLGAAFFEQHLLDYDCASNWCNWAYIAGVGNS--SARQ 392
Query: 499 FSIPKQAQNYDREGEYVAYWLP 520
F+ KQA YD +G++V +WLP
Sbjct: 393 FNQIKQALTYDPDGDFVRHWLP 414
>gi|440640654|gb|ELR10573.1| hypothetical protein GMDG_04846 [Geomyces destructans 20631-21]
Length = 686
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 159/520 (30%), Positives = 244/520 (46%), Gaps = 86/520 (16%)
Query: 82 VAIVWFRNDLRVLDN----EALLKAWDSSEMVLPVYCVD----------PRHSQTTYHF- 126
+ I R DLR+ DN A A + +LPVY P+ S+ +
Sbjct: 6 ILIYLLRRDLRLEDNPVFHTAATDAAKTYTHLLPVYAFPAQQIEVSGFIPKVSEEKSPYP 65
Query: 127 -------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF---G 176
F + G RA+F+ E + +L++ L N G L +R G +++ L F G
Sbjct: 66 EARSSISKFWRCGPHRAKFIAESVWELKETLGNVGSGLEVRVGMLSDVLKDLLAGFKFNG 125
Query: 177 AHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD--I 234
A +EE E+L K+ + + ++ + K +W Y +DD +
Sbjct: 126 KGVNIAAVWMTAEEGVEEKLDEKDCKTICDAAGVDFK---------LWKDEKYFVDDDDV 176
Query: 235 PF-DHSSLPDVYTHFRKSIEAKCTV-RGCIRIPSSFG----PPPSVVDWGSVPLI----- 283
P D S LPDV+T +RK +E R + P+ PP S++ S P +
Sbjct: 177 PLKDISELPDVFTTYRKLVEPLLNAPRALLPTPAKGTLPPLPPMSIIPPQSPPFVIPNSY 236
Query: 284 EQLEL-------HSPKVSKGMR---------FVGGESAALGRVNEYFWKKDLLKVYKETR 327
E LE SP + +R GG AA R+ + + + YK+TR
Sbjct: 237 EDLESSLLSPISQSPLPTFPLRPSSMPPSPTLHGGSQAAKSRL-LHLLESGAITTYKDTR 295
Query: 328 NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE--------------RVANDSTYWV 373
N+++G DYS + S +L+ G I+ R I++ + S+E + T +
Sbjct: 296 NDLMGADYSVRLSSYLSQGCITARQIHDSLVSFESGDSNLPSCASTPGFGKGETGGTSAI 355
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRK-LEYKWSQ------DQKLFESWRDGCTGYPL 426
+EL+WRDY R + KYG LF +GG R+ W+ + +G TG L
Sbjct: 356 RYELLWRDYMRLCTRKYGALLFSIGGFRRDFSQPWTTPSTDPASSAALARFLNGTTGTGL 415
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
IDA+ +EL++TG+ S+R RQ +FL + + +DWR+GAEW+E L DYD S +GNW Y
Sbjct: 416 IDASQRELALTGYTSSRARQNVANFLAKHLELDWRLGAEWYEYALEDYDVSSCWGNWQYV 475
Query: 487 AGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
AGVGNDPR D R F+ KQ+ +YD +GEY W+ +L +
Sbjct: 476 AGVGNDPRGDGRSFNPIKQSWDYDPKGEYCRAWIVELAGV 515
>gi|400600754|gb|EJP68422.1| DASH family cryptochrome [Beauveria bassiana ARSEF 2860]
Length = 720
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 165/527 (31%), Positives = 248/527 (47%), Gaps = 96/527 (18%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTYHFG------FP-- 129
V + R DLR+ DN + +S+ +LPV + P +T+ FP
Sbjct: 6 VLVYLLRRDLRLADNPVFHRLTSTSDHGFTHLLPVVVLPPDQIETSGFLKSDQTSPFPLA 65
Query: 130 --------KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF---GAH 178
+ G RA+F E + DL+ L + L+IR G P +++ ++ + G
Sbjct: 66 KSRVGKFWRCGPHRAKFFAEAVWDLKNTLSSHQSGLIIRVGPPADVVRAIIQHLQCSGEA 125
Query: 179 AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH 238
AV A T +R QQ +S+ N + + LI Y++DD D
Sbjct: 126 AVAAVWMTDDVPWEEKR------QQDDISAVCNSANVD---FTLI-PDEKYYIDDRDVDI 175
Query: 239 SS--LPDVYTHFRKSIEAKCTVRGCI--RIPSSFGP-------PPSVVDWG--------- 278
++ LPDV+T +RKS E + + SS P PP V +
Sbjct: 176 ATQELPDVFTTYRKSQEPLREKPRAVYPNMKSSLPPLPPDTLIPPQAVPFQIPDDLDTFQ 235
Query: 279 ---SVPLIEQLELHSPKVS-----KGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEM 330
S PL+ +L +P V+ F+GGE +A+ R+ ++ K Y +TRN +
Sbjct: 236 KYLSKPLV--FDLPNPPVNPEDAKSAHPFLGGEQSAIDRL-QHLVKSGAASSYSDTRNGL 292
Query: 331 LGPDYSTKFSPWLASGSISPRYIYEEVKSYERE------------RVANDSTYWVLFELM 378
LG D+STK S +L G ++ R I+ E+ E + N+ T + EL+
Sbjct: 293 LGVDFSTKLSAFLCLGCLTARQIHSELVKLEDGTDEKYQDAPGYGQGENNGTKSIRLELL 352
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLE---YKW--------SQDQ--------KLFESWRD 419
WRDY R + K+G LF G R+++ KW S DQ ++ + +
Sbjct: 353 WRDYMRLCTKKFGTKLFAASGFREVDGYNKKWKTANSATASSDQHPSPQKIGEIIQRFLQ 412
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TG LIDA+ +EL TG+ SNR RQ SF + + IDWR GAEW+E L+DYD SN
Sbjct: 413 GNTGMGLIDASQRELFATGYTSNRARQNVASFFAKHLDIDWRYGAEWYECMLVDYDVSSN 472
Query: 480 YGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ NW Y AGVGNDPR D R F+ KQA +YD++G+YV W+ +++
Sbjct: 473 WANWQYVAGVGNDPRGDARIFNPVKQAFDYDKQGDYVRAWVSEVRGF 519
>gi|429851356|gb|ELA26551.1| cryptochrome dash [Colletotrichum gloeosporioides Nara gc5]
Length = 690
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 161/527 (30%), Positives = 247/527 (46%), Gaps = 91/527 (17%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTYHF----------- 126
+ I R+DLR+ DN L SS+ VLPVY P H F
Sbjct: 6 ILIYLLRHDLRIADNPILHHLATSSDHGFTHVLPVYIF-PAHQIEISGFLRDGSKSKYPE 64
Query: 127 ------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAV 180
F + G R +F+ + + +L+++L G +L +R G +++ L + F
Sbjct: 65 ARSEIGKFWRCGPHRTKFIAQSVWNLKESLEGVGSDLCLRAGMFGDVVDELLRGFSD--- 121
Query: 181 YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF---D 237
++ + + + E V + ++ +++ + N W Y +DD +
Sbjct: 122 -SKYKVGAVWMTAEEAVEEKKDEMAVAAACSKHGVNFK----TWLDEKYFIDDRDLGLKN 176
Query: 238 HSSLPDVYTHFRKSIEA-----KCTV----RGCIR------IPSSFGP---PPSVVDWGS 279
L +V+T FRK+ E K T+ + I+ +P+ P P
Sbjct: 177 PEDLDNVFTAFRKTQEPLREKPKPTLPQPKKSAIKPYPKDLLPTQSSPYEVPSDDYSKLE 236
Query: 280 VPLIEQLE---LHSPKVSKGMR----FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLG 332
L++ L PK+ + F GGES A R++ + K + YK TRN +LG
Sbjct: 237 SALLKPLTSPFTDDPKIPDKAKSVHPFHGGESEARSRLH-HLVKSGAMTEYKNTRNGLLG 295
Query: 333 PDYSTKFSPWLASGSISPRYIYEEVKSYERE------------RVANDSTYWVLFELMWR 380
D+STK S +L+ G ++ R I+E + +E + ND T V FEL+WR
Sbjct: 296 VDFSTKLSAFLSLGCLTSRQIHEALVQFEDGTNEDFKETSGYGKGENDGTKAVRFELLWR 355
Query: 381 DYFRFISLKYGNSLFHLGGPRK----------LEYKWSQD---------QKLFESWRDGC 421
DY R + K+ LF + G ++ E+ ++D +K + + +G
Sbjct: 356 DYMRLCTRKFQEKLFRVTGFKEDDTPKWKTANAEHVITEDNLGASVDDIKKTLQRFLEGT 415
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG LIDA+ +EL TG+ SNR RQ SFL + +GIDWR GAEW+E L+DYD SN+
Sbjct: 416 TGMGLIDASQRELIHTGYTSNRARQNVASFLTKHLGIDWRYGAEWYEYLLVDYDVSSNWS 475
Query: 482 NWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
NW Y AGVGNDPR D R F+ KQA +YD+EGEYV W+ + + L K
Sbjct: 476 NWQYVAGVGNDPRGDNRIFNPIKQAFDYDKEGEYVKAWVVETRGLEK 522
>gi|74696815|sp|Q7SI68.1|CRYD_NEUCR RecName: Full=Putative cryptochrome DASH, mitochondrial; Flags:
Precursor
gi|38567324|emb|CAE76612.1| related to deoxyribodipyrimidine photo-lyase [Neurospora crassa]
Length = 745
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 165/534 (30%), Positives = 241/534 (45%), Gaps = 108/534 (20%)
Query: 82 VAIVWFRNDLRVLDNEAL--LKAWDSSE---MVLPVYCV----------------DPRHS 120
V I R +LR+ DN L +S +LPVY +P +
Sbjct: 6 VVIYAMRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHPA 65
Query: 121 QTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH-- 178
+ G+ + G RA+FL E + DL+ +L + G +LL+R G +++I SL + A
Sbjct: 66 PKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKEC 125
Query: 179 ---AVYAQKETCSEELNVERLVRKNLQQVVLSSQ--SNDKSTNHPQLKLIWGTTMYHLDD 233
AV+ SEE + E+ V + + + ++K H + T + HL+D
Sbjct: 126 QVGAVWMTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDR-----DTGITHLND 180
Query: 234 IPFDHSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWGSVP----------- 281
LPDV+T +RK IE + R + +P G P+ D +P
Sbjct: 181 -------LPDVFTTYRKQIEPLREKARKTLPVPEK-GALPAYPDIDMIPSQQPPFNIPGT 232
Query: 282 --------------LIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETR 327
++ L K F GGE++A R++ + K YK++R
Sbjct: 233 CEELVDAVVRPVKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGM-KSYKDSR 291
Query: 328 NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA------------NDSTYWVLF 375
N +LGPD+STK S +LA G ++ R I+ + +YE N T V
Sbjct: 292 NGLLGPDFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRM 351
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRD---------------- 419
EL+WRDY R KYG+ LF + G + + K + WR
Sbjct: 352 ELLWRDYMRLCHQKYGDKLFRVEGFNGKHTDYEGEDKKY-GWRTANTSIALPGQEPTPEK 410
Query: 420 ----------GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
G TG LIDA+ +EL TG+ SNR RQ SFL + + IDWR GAEW+E
Sbjct: 411 VSEILARFNAGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEM 470
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQL 522
L+DYD SN+ NW Y AGVGNDPR R F+ KQA +YD++G YV W+P++
Sbjct: 471 LLVDYDVSSNWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEV 524
>gi|164428444|ref|XP_965722.2| hypothetical protein NCU00582 [Neurospora crassa OR74A]
gi|157072149|gb|EAA36486.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 722
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 151/468 (32%), Positives = 220/468 (47%), Gaps = 87/468 (18%)
Query: 127 GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH-----AVY 181
G+ + G RA+FL E + DL+ +L + G +LL+R G +++I SL + A AV+
Sbjct: 62 GYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKECQVGAVW 121
Query: 182 AQKETCSEELNVERLVRKNLQQVVLSSQ--SNDKSTNHPQLKLIWGTTMYHLDDIPFDHS 239
SEE + E+ V + + + ++K H + T + HL+D
Sbjct: 122 MTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDR-----DTGITHLND------ 170
Query: 240 SLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWGSVP----------------- 281
LPDV+T +RK IE + R + +P G P+ D +P
Sbjct: 171 -LPDVFTTYRKQIEPLREKARKTLPVPEK-GALPAYPDIDMIPSQQPPFNIPGTCEELVD 228
Query: 282 --------LIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGP 333
++ L K F GGE++A R++ + K YK++RN +LGP
Sbjct: 229 AVVRPVKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGM-KSYKDSRNGLLGP 287
Query: 334 DYSTKFSPWLASGSISPRYIYEEVKSYERERVA------------NDSTYWVLFELMWRD 381
D+STK S +LA G ++ R I+ + +YE N T V EL+WRD
Sbjct: 288 DFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRD 347
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRD---------------------- 419
Y R KYG+ LF + G + + K + WR
Sbjct: 348 YMRLCHQKYGDKLFRVEGFNGKHTDYEGEDKKY-GWRTANTSIALPGQEPTPEKVSEILA 406
Query: 420 ----GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYD 475
G TG LIDA+ +EL TG+ SNR RQ SFL + + IDWR GAEW+E L+DYD
Sbjct: 407 RFNAGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYD 466
Query: 476 PCSNYGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQL 522
SN+ NW Y AGVGNDPR R F+ KQA +YD++G YV W+P++
Sbjct: 467 VSSNWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEV 514
>gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 186/351 (52%), Gaps = 50/351 (14%)
Query: 78 NGKGV---AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
NG G+ +IVWFRNDLRV DNEAL+ A S +LPVYC DP+ + GF KTG
Sbjct: 172 NGCGLRRASIVWFRNDLRVHDNEALVSANRDSLSILPVYCFDPKDYGKSSS-GFDKTGPY 230
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
RA FL+EC+A+LR +L RG +L++R G PE ++ LAKS GA A+Y +E EEL E
Sbjct: 231 RANFLLECVANLRSSLRERGSDLIVRVGSPEAVLVDLAKSVGAEALYVHQEVTYEELQAE 290
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
V LQ+ + + K WG+T++HL+D+PF +P Y FR+ ++
Sbjct: 291 EKVAAALQEKGI------------ETKYFWGSTLFHLEDLPFKLQDMPSNYGGFREKVQ- 337
Query: 255 KCTVRGCIRIPSSFGPPPSV--VDWGSVPLIEQLELH-SPKVSKGMRFV------GGESA 305
+R I P P+ V GS+P IE L L+ + + KG V GGE
Sbjct: 338 NVAIRDTIEAPQQLKGLPACGNVKPGSIPSIEVLGLNPATNLRKGSVTVGGDGLLGGEEE 397
Query: 306 ALGRVNEYFW----KKDLLKVYK----ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
AL R+ ++ + LK K + + + G ++S K SPWL G +SPR ++E++
Sbjct: 398 ALQRLQKFALEARSQTSNLKASKSQSESSGDSLYGANFSCKISPWLTMGCLSPRRMFEDL 457
Query: 358 KSYERERVA----------------NDSTYWVLFELMWRDYFRFISLKYGN 392
K A ++ W++FEL+WRD+FRFI+ KYG
Sbjct: 458 KKSASSASAGAMSALAVKASGAGSDDNGLNWLVFELLWRDFFRFITKKYGT 508
>gi|375109295|ref|ZP_09755544.1| DASH family cryptochrome [Alishewanella jeotgali KCTC 22429]
gi|374570599|gb|EHR41733.1| DASH family cryptochrome [Alishewanella jeotgali KCTC 22429]
Length = 446
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 204/409 (49%), Gaps = 31/409 (7%)
Query: 125 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184
+G + R + ++ + L + L + L+IR G + LA+ A + A +
Sbjct: 41 QYGLYRCNLWRLKTQLQAVQALTEALAQHNIGLIIRFGDTRSELLQLAEQLQADRLLASE 100
Query: 185 ETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDV 244
T EE R + L + + S +T P+L LPD
Sbjct: 101 PTAPEEYQALRALTPALALELQDNNSLLGATLRPEL------------------GRLPDR 142
Query: 245 YTHFRKSIEAKCTVRGCIRI-PSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGE 303
+T FRK +E V R P+ P+ S +I Q L + ++ E
Sbjct: 143 FTQFRKQLEPSLLVTPPQRTQPAGDWLSPAAAATYSQQVILQQWLGNSVPARW-----DE 197
Query: 304 SAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE 363
+ AL R+ + W+ + YK++RN ++G Y++ FS L+ G++S R +++V+ +E++
Sbjct: 198 TKALARLKHFIWQGQHILHYKDSRNALIGEHYASFFSTPLSLGTLSVRRCWQQVEQFEQQ 257
Query: 364 RVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG-PRKLEYKW----SQDQKLFESWR 418
AN+STYW+ FEL+WR++FR+ KY F G K +Y + Q F +W
Sbjct: 258 IEANESTYWLKFELLWREFFRWQMRKYQARWFSKTGISGKADYTKPNLNNSQQHAFANWC 317
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
G TG P IDANM+ L+ +G MSNRGRQ S+LV D+ +DWR+GA +FE LLDYD S
Sbjct: 318 AGNTGVPFIDANMRLLNQSGLMSNRGRQNVASYLVHDLALDWRLGAAYFEQRLLDYDVAS 377
Query: 479 NYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
N+GNW Y AG GN E R F+ KQA YD + +V LP + + K
Sbjct: 378 NWGNWAYIAGYGNS--EARPFNPIKQALWYDPDAAFVRQLLPDISGVGK 424
>gi|307105812|gb|EFN54060.1| hypothetical protein CHLNCDRAFT_136148 [Chlorella variabilis]
Length = 661
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 159/553 (28%), Positives = 232/553 (41%), Gaps = 119/553 (21%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKA---------WDSSEMVLPVYCVD-----PRHSQTTYH 125
K A++WFRNDLR+ D+E L A S ++LP YC+D PR +
Sbjct: 34 KPAALIWFRNDLRLADHEPLHSAAADLQHCLSQGQSPLLLPFYCLDERELAPRAGELPQE 93
Query: 126 FGF--PKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQ 183
G P+ G R + L+E A LR L G +LL G+PE ++ + A
Sbjct: 94 GGLDIPQLGPHRLRLLLEACASLRAALRRLGSDLLAAQGRPEALV---GRLVALAAAAGS 150
Query: 184 KETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKL--IWGTTMYHLDDIPFDHSSL 241
+L+ V ++ + + + WG T+YH DD+PF +
Sbjct: 151 SSMALHHHMSPDAASADLEDAVAAAFEAAAARHGLPCSVHRYWGCTLYHPDDLPFHLWAC 210
Query: 242 PDVYTHFRKSI--------EAKCTVRG-CIRI-PSS-----FGPPPSVVD---------- 276
+ R E + RG C R+ P++ GP P+ +
Sbjct: 211 GSASSGGRPGAAAVAGPAAEQQQQQRGQCSRVNPAAAEAGLLGPLPTDLASVYSAAGGAA 270
Query: 277 ------WGSVPLIEQLELHSPKVS------KGMRFVGGESAALGRVNEYFW--------- 315
W ++ + L +P S + F GE A+ R+ Y
Sbjct: 271 TAALACWEALGAVRCAAL-APACSGRHDARSALPFGMGEEQAVQRLRYYLGLEESDGHSV 329
Query: 316 ----KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE---------- 361
++ + Y+ETR + G D S K S +L+ G +SPR + EV
Sbjct: 330 RSVDQEAPIATYRETRMQPFGVDSSAKLSAFLSLGCLSPRTAHAEVARLAVLEQQQQQQQ 389
Query: 362 -----------------------------RERVANDSTYWVLFELMWRDYFRFISLKYGN 392
RE A D+ W+L L RD+F F ++K G+
Sbjct: 390 RRRRGQASSGDAAATAAVAAAAGEAAAAWREPQAGDTWRWLLMHLAIRDFFVFTAVKEGD 449
Query: 393 SLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFL 452
+L GG R +W +D +LF W G TG P +DA M+EL TGFMSNRGRQ
Sbjct: 450 ALEAPGGIRGRAVEWRRDDELFRRWAQGQTGLPFVDACMRELGATGFMSNRGRQ------ 503
Query: 453 VRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREG 512
++ +DWR+G +FE+CL D++ N GNW Y AG G+DPR DR F Q + YD E
Sbjct: 504 -NELCLDWRLGLRYFESCLADHEWALNAGNWAYCAGTGSDPR-DRRFKTVSQGERYDPEA 561
Query: 513 EYVAYWLPQLKAL 525
+ W+PQL AL
Sbjct: 562 RLIQAWVPQLAAL 574
>gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
Length = 485
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 222/453 (49%), Gaps = 29/453 (6%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
AIVWFR+DLR+ D+ AL+ A D+ ++ +Y +D ++T H G GA +L
Sbjct: 6 ATAIVWFRDDLRLSDHAALIAARDAGATLICLYVLD--DTETGKH-GPRSLGAAAQWWLA 62
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
L L +L G +L++R G E++P LA+ A AV+ S E R V +
Sbjct: 63 NSLRALDTDLKKLGQHLVLRRGDAHEVLPKLAREANAKAVFWIDSEVSAEAARARDVAEA 122
Query: 201 LQQ--VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
L++ V + ++D + ++ G + V+T F K + A+
Sbjct: 123 LKEIGVEVHVSASDLLASPQSIRNKEGHGLR--------------VFTPFWKRVRAQGEP 168
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIE-QLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
+ PP VV S L + QLE P + G R + GE+ A R++++
Sbjct: 169 PRPLAAVRKL--PPPVVSLKSENLEDWQLEPTRPDWAGGFRETWTPGEAGAHRRLHDFL- 225
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK-SYERERVANDSTYWVL 374
+K Y E R+ G D+++ SP L G ISPR ++ + + ER + L
Sbjct: 226 -DGAIKGYAEGRD-FPGKDHASHLSPHLRFGEISPRQVFHAARFAAERHPALSRDIEKFL 283
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL WR++ R + + + H ++ W +D K +W+ G TGYP++DA M+EL
Sbjct: 284 SELGWREFCRHLLFDHPDLHRHNLQSSFDDFPWRRDAKALRAWQQGRTGYPIVDAGMREL 343
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
TG M NR R + SFLV+ + +DWR G +WF L+D DP SN GNW + AG G D
Sbjct: 344 WHTGAMQNRIRMVTASFLVKHLLLDWRDGEQWFWDTLVDADPGSNPGNWQWVAGCGADAA 403
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D +G YVA W+P+L LP
Sbjct: 404 PYFRIFNPILQGEKFDPDGAYVARWVPELSKLP 436
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 132/450 (29%), Positives = 214/450 (47%), Gaps = 34/450 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
AIVWFR DLR+ D+ L++A + V+PV+ +DP + + G R F+++
Sbjct: 5 TAIVWFRRDLRLHDHPPLVRALAAHARVVPVFVLDPAIVRGRFASG------ARTAFMLD 58
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L +L RG L++R G+PE +P+LA+ GA AV+ + + +R VR L
Sbjct: 59 CLRELDADLRERGSGLVVREGRPERELPALAREIGAAAVHWASDATPYAIARDRRVRSAL 118
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI--PFDHSSLP-DVYTHFRKSIEAKCTV 258
+ + N + D+ P + P V+T F ++ + +
Sbjct: 119 AAAQPAVAAVPGPGNF-------------VADVGRPRTRAGGPYTVFTPFHRAWQ-QLER 164
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
R R P+ P P+ + G++P + L L + ++S R V R W
Sbjct: 165 RTVHRTPAVLPPLPAGLRRGALPSLAALGL-TDELSPTARAVE-PGERAARRAAERWLDG 222
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L Y + + G ++ SP+L G +S R + R + + +L
Sbjct: 223 HLGDYARDHDRLAG--GTSALSPYLHHGCLSARECEQRAV-----RRGGEGAEAFVRQLA 275
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRD++ + L + + R +W +D +L +W+DG TG+PL+DA M++L +G
Sbjct: 276 WRDFYAHVLLHHPEDVRREHQERMRALRWERDDELLAAWQDGRTGFPLVDAGMRQLRASG 335
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-- 496
+M NR R + SFL +D+ +DWR G WF LLD D SN GNW + A VG DP
Sbjct: 336 WMHNRARLVTGSFLTKDLQLDWRAGEAWFMRWLLDGDVASNNGNWQWIASVGVDPAPAFR 395
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R + Q + +D +G YV W+P+L +P
Sbjct: 396 RILNPALQQRRHDPDGAYVRRWVPELARVP 425
>gi|407846250|gb|EKG02478.1| DNA photolyase, putative,cryptochrome, putative [Trypanosoma cruzi]
Length = 871
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 153/518 (29%), Positives = 236/518 (45%), Gaps = 75/518 (14%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM-----VLPVYCVDPR-HSQTTYHFGFPKTGALR 135
V +V+ ND+RV DN L A +E V+ V +D R +Q + G+ + +R
Sbjct: 221 VMVVFAANDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMR 280
Query: 136 AQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
A+F +E LA LR L + LLIR G+PEE +P LA GA V+ + E NV
Sbjct: 281 ARFFLESLAKLRAKLEEELNVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVH 340
Query: 195 RLV------RKNLQQVVLSS---QSNDKSTNHPQLKL-----------------IWGTTM 228
+ RK + + V S +++D + +HP +W TT+
Sbjct: 341 DTIVESIKRRKWVSRDVASGLKLKTHDAAVSHPYGNCDGDREAVTAAVSPVPHSVWQTTL 400
Query: 229 YHLDDIPFDHSSLP---------------------DVYTHFRKSIEAKCTVRGCIRIPSS 267
H+DD+P +++ D Y S+ + + S
Sbjct: 401 VHIDDLPVPVAAMAEGERWYHDDVTVASIRPTAPYDRYIARISSLPTRHELLPTAAERSG 460
Query: 268 FGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVG-------GESAALGRVNEYFWKKDLL 320
PP + GS+P ++QL + + + GE AA+ RV ++ +
Sbjct: 461 LAHPP--LYRGSIPTLDQLGYGNQEAFAVEEVIATQSSHPPGEHAAIERVEDWLAGGGVT 518
Query: 321 KVYKETR----NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW---- 372
+ + R N + ++ SP+L++GS+SPR YE ++ Y E + ++
Sbjct: 519 SLLRHGREHRTNVKMYSQRLSRVSPYLSNGSLSPRRFYEMLRCYATENLRDNFVQMQYRE 578
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK----WSQDQKLFESWRDGCTGYPLID 428
L L RDY+ ++ L+YG LF GPR + W D+K+ + W G TG P D
Sbjct: 579 ALLRLSRRDYWHWMGLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFAD 638
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M+EL TGF+++ GRQ L R G DWR+GAEW E C LDYDP YGN+ Y +
Sbjct: 639 AAMRELLTTGFVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSE 698
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+ D + S+ A ++D+ G YV WLP L +P
Sbjct: 699 LILDDFGEPVRSVHWLAHHHDQTGIYVKKWLPLLSKIP 736
>gi|71659265|ref|XP_821356.1| DNA photolyase [Trypanosoma cruzi strain CL Brener]
gi|70886733|gb|EAN99505.1| DNA photolyase, putative [Trypanosoma cruzi]
Length = 875
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 149/518 (28%), Positives = 236/518 (45%), Gaps = 75/518 (14%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM-----VLPVYCVDPR-HSQTTYHFGFPKTGALR 135
V +V+ ND+RV DN L A +E V+ V +D R +Q + G+ + +R
Sbjct: 225 VMVVFAANDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMR 284
Query: 136 AQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
A+F +E LA LR + + LLIR G+PEE +P LA GA V+ + E NV
Sbjct: 285 ARFFLESLAKLRATIEEELHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVH 344
Query: 195 RLVRKNLQQ---------VVLSSQSNDKSTNHPQLKL-----------------IWGTTM 228
+ +++++ L +++D + +HP +W TT+
Sbjct: 345 DTIVESIKRRKWVSRDVASGLKPKTHDAAVSHPYGNCDGDREAVTAAVSPVPHSVWQTTL 404
Query: 229 YHLDDIPFDHSSLP---------------------DVYTHFRKSIEAKCTVRGCIRIPSS 267
H+DD+P +++ D Y S+ + + S
Sbjct: 405 VHIDDLPVPVAAMAEGERWYHDDVTVASIRPTAPYDRYIARISSLPTRHELLPTAAERSG 464
Query: 268 FGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVG-------GESAALGRVNEYFWKKDLL 320
PP + GS+P ++QL + + + GE AA+ RV ++ +
Sbjct: 465 LAHPP--LYRGSIPTLDQLGYGNQEAFAVEEVIATQSSHPPGEHAAIERVEDWLAGGGVT 522
Query: 321 KVYKETR----NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW---- 372
+ + R N + ++ SP+L++GS+SPR YE ++ Y E + ++
Sbjct: 523 SLLRHGREHRTNVKMYSQRLSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYRE 582
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK----WSQDQKLFESWRDGCTGYPLID 428
L L RDY+ ++ L+YG LF GPR + W D+K+ + W G TG P D
Sbjct: 583 ALLRLSRRDYWHWMGLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFAD 642
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M+EL TGF+++ GRQ L R G DWR+GAEW E C LDYDP YGN+ Y +
Sbjct: 643 AAMRELLTTGFVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSE 702
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+ D + S+ A ++D+ G YV WLP L +P
Sbjct: 703 LILDDFGEPVRSVHWLAHHHDQTGIYVKKWLPLLSKIP 740
>gi|418939862|ref|ZP_13493247.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
gi|375053424|gb|EHS49818.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
Length = 480
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 215/455 (47%), Gaps = 44/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+WFR DLR+ DN AL A D V+PVY +P + T GA +A +L L
Sbjct: 8 ILWFRKDLRLDDNAALATAADEGRRVIPVYIREPAEAGTG------PLGAAQAWWLHHSL 61
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L ++L G L +R G +++ L GA +VY + + +++ ++ L +
Sbjct: 62 AALARSLEEIGSRLTLRSGPAGQVLDQLIDETGAASVYWNRRYDPPGIAIDKAIKARLTE 121
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
L ++ H +L G+ VYT F K++E+ R
Sbjct: 122 DGLVIRTFAGQILHEPTRLTTGSGTNF------------RVYTPFWKALESSGEPREPAP 169
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV----GGESAALGRVNEYFWKKDL 319
P+S PPS D S PL + L K + F GE+ AL R++ + ++
Sbjct: 170 APASLNAPPSWPD--SEPL-DSWALLPTKPNWAAEFSEIWQPGEAGALERLDTFI--ENG 224
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L Y+ R+ P+ S SP LA G ISP I+ + R A++ E++W
Sbjct: 225 LAGYRSLRDFPARPNTSM-LSPHLAMGEISPARIWHATRGLA-GRFASEDIIHFRKEVVW 282
Query: 380 RDY-----FRFISLKYGN--SLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
RD+ F F LK N S F + W L + W+ G TGYP++DA M+
Sbjct: 283 RDFSYHLLFHFPDLKSKNWNSKFD-------AFPWRSAPDLLKKWQRGETGYPIVDAGMR 335
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L G+M NR R IA SFL++D+ IDWR G WF L+D DP SN +W + AG G D
Sbjct: 336 QLWRHGYMHNRVRMIAASFLIKDLMIDWREGERWFRDTLVDADPASNAASWQWVAGSGAD 395
Query: 493 PRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D EG Y+ ++P+LKA+P
Sbjct: 396 ASPFFRIFNPITQGEKFDVEGHYIRTFVPELKAMP 430
>gi|428774053|ref|YP_007165841.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
gi|428688332|gb|AFZ48192.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
Length = 476
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 142/463 (30%), Positives = 227/463 (49%), Gaps = 52/463 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L +A+ +S+ ++ +C+DP R +++
Sbjct: 4 LILFWHRKDLRITDNLGLHEAYQNSKKIIGFFCLDPDI------LSRDDIAPARVTYMLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +LRK RG L+ P+ II LA + A+++Y K+ N +R + K L
Sbjct: 58 CLEELRKKYQERGGTFLVFKDSPQNIILKLAHNLKANSIYWNKDVEPYSRNRDRELAKTL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ ++ + HP G + ++ P+ VY F +S E V
Sbjct: 118 KEKNINYHAFWDQLMHPP-----GDVLTKSNNTPYT------VYGPFWRSWEKLEKV--- 163
Query: 262 IRIPSSFGPPPSVV--DWGSVPLIEQL-ELHSPKVSK-GMRFVG------GESAALGRVN 311
+ F P S++ D +++QL ++ PK G + G GE +AL R+
Sbjct: 164 ----APFPAPSSLISLDENEQKIVDQLGAINLPKAENLGYEWQGDLILAPGEKSALERL- 218
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY----EEVKSYERERVAN 367
EYF DLL Y + RN D ++ S L G+I+PR I+ EE ++ + +
Sbjct: 219 EYF-CSDLLLYYDDNRN-FPAIDGTSLLSAALKFGAIAPRTIWQKTVEEWENCQSDEARE 276
Query: 368 DSTYWVLFELMWRDYFR-----FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCT 422
+ T W EL WR++++ F L G H E+ W D+K F++W +G T
Sbjct: 277 NITAWRK-ELAWREFYQHCLYFFPELAQGPYREHFK-----EFPWENDEKKFQAWCEGKT 330
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
GYP++DA M++L+ TG+M NR R I SFL +D+ IDWR G ++F L D D +N G
Sbjct: 331 GYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQKLYDGDLAANNGG 390
Query: 483 WTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
W + A G DP+ R F+ QAQ +D E +Y+ WLP++ +L
Sbjct: 391 WQWSASSGMDPKPLRIFNPASQAQKFDPEAQYIRQWLPEISSL 433
>gi|407406842|gb|EKF30945.1| DNA photolyase, putative,cryptochrome, putative [Trypanosoma cruzi
marinkellei]
Length = 874
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 155/518 (29%), Positives = 237/518 (45%), Gaps = 75/518 (14%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM-----VLPVYCVDPR-HSQTTYHFGFPKTGALR 135
V +V+ ND+R+ DN L A +E V+ V +D R +Q + G+ + +R
Sbjct: 224 VMVVFAANDMRIHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMR 283
Query: 136 AQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
A+F +E LA LR + + LLIR G+PEE +P LA GA V+ + E NV
Sbjct: 284 ARFFLETLAKLRATIEEELHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVH 343
Query: 195 RLV------RKNLQQVVLSS---QSNDKSTNHPQ-----------------LKLIWGTTM 228
+ RK + + V S +++D + HP +W TT+
Sbjct: 344 DTIVDSIKRRKWVSRDVASGLKLKTHDAAVFHPYGNRDRDTEAVTAAVSPVPHSVWQTTL 403
Query: 229 YHLDDIPFDHSSLP---------------------DVYTHFRKSIEAKCTVRGCIRIPSS 267
H+DD+P +++ D Y S+ + + S
Sbjct: 404 VHIDDLPVPVAAMAEGERWYHDDVTVASIRPTAPYDRYIARLSSLPTRHELLPTAAERSG 463
Query: 268 FGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVG-------GESAALGRVNEYFWK---K 317
PP + GS+P +EQL + + + GE AA+ RV ++
Sbjct: 464 LACPP--LYRGSIPTLEQLGYGNLEAFAVEEVIATQSSHPPGEHAAIERVEDWLAGGGVT 521
Query: 318 DLLKVYKETR-NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW---- 372
LL+ +E R N + ++ SP+L++GS+SPR YE ++ Y E + ++
Sbjct: 522 SLLRYGREYRTNVKMYSQRLSRVSPYLSNGSLSPRRFYEMLRRYASENLRDNFVQMQYRE 581
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK----WSQDQKLFESWRDGCTGYPLID 428
L L RDY+ ++ L+YG LF GPR + W D+K+ + W G TG P D
Sbjct: 582 ALLRLSRRDYWHWMGLRYGPQLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFAD 641
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M+EL TGF+++ GRQ L R G DWR+GAEW E C LDYDP YGN+ Y +
Sbjct: 642 AAMRELLTTGFVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSE 701
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+ D + S+ A ++D+ G YV WLP L +P
Sbjct: 702 LILDDFGEPVRSVHWLAHHHDQTGIYVKKWLPLLSKIP 739
>gi|169609250|ref|XP_001798044.1| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15]
gi|160701810|gb|EAT85178.2| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15]
Length = 582
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 152/274 (55%), Gaps = 35/274 (12%)
Query: 301 GGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY 360
GGE L R+ + + + YK TRN MLG D+STK S +LA G I+ R ++ +K +
Sbjct: 206 GGEEHGLDRI-AHLIRSGAMSSYKATRNGMLGLDFSTKLSAYLAQGHITARQVHWAMKDF 264
Query: 361 ERERVA-----------NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG--PRK----- 402
E R N+ T V FEL+WRDY R K+G+ +F L G P +
Sbjct: 265 EEGRGEGKGIAGYGKGENEGTAAVRFELLWRDYMRLCMRKFGHKMFALYGIQPHRKGQGD 324
Query: 403 ---LEYKW-------------SQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQ 446
+ +W ++ + F+ +R G TG LIDA+ +EL TG+ SNR RQ
Sbjct: 325 EPIYKKRWRMVHKPNGAGDDHKKNMETFQRFRSGRTGVGLIDASNRELFCTGYTSNRARQ 384
Query: 447 IACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQ 506
SFL + IDWR+GAEW+E L+DYD SN+GNW Y AGVGNDPR+ R F+ KQA
Sbjct: 385 NVASFLSSHLDIDWRIGAEWYEMLLIDYDVASNWGNWQYVAGVGNDPRQGRIFNPVKQAF 444
Query: 507 NYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQ 540
+YD +GEY+ W+P+L+ L + PG I+Q
Sbjct: 445 DYDGKGEYIKAWVPELRQLKLTKTVAPGKEEIDQ 478
>gi|342186313|emb|CCC95799.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 857
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 160/524 (30%), Positives = 237/524 (45%), Gaps = 82/524 (15%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM-----VLPVYCVDPRH-SQTTYHFGFPKTGALR 135
V +V+ ND+RV DN AL A ++ V+ V VD R +Q T GF K +R
Sbjct: 215 VMVVFAANDMRVHDNYALALAARRAQAAGGLPVIAVAVVDYRSFAQPTEIGGFFKQSPMR 274
Query: 136 AQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
A+F +E LA LR+ L + LLIR G+PEE IP L A V+ + E V
Sbjct: 275 ARFFLETLAKLREKLEGELRVPLLIRCGRPEEHIPRLVVECSAIDVFLTTQYTPHEKEVH 334
Query: 195 RLVR---KNLQQVVLSSQSN------DKSTNHPQL----------------------KLI 223
+ KN + V SN D + HP +
Sbjct: 335 DAIMNAVKNRRWVCRDPTSNFGMIEHDATITHPYYGSSGAPGQAFDKGFSLTTAAVPHSV 394
Query: 224 WGTTMYHLDDIPFDHSSLP--------DVYTHFRKSIEAKCTVRGCI----RIPSSFGPP 271
W TT+ H++D+P +S+ DV T +I CI ++P
Sbjct: 395 WQTTLVHIEDLPVPVASMAEGERWYHDDVTT---ANIRPTAAFDRCIDQLRKLPVRHDLL 451
Query: 272 PSVVDW----------GSVPLIEQLELHSPKVSKGMRFVG-------GESAALGRVNEYF 314
PS + G +P + +L SP+ + GE AA+ R++++
Sbjct: 452 PSTDELRGLVTPPAYRGCIPTVAELGYGSPEAFVEEEVIATQSSHPPGEDAAIERLHDWL 511
Query: 315 WK---KDLLKVYKETR-NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
+L+ +E R N + ++ SP+L+ G++SPR YEE++ + E V ++
Sbjct: 512 MDGGMSSMLRYGRERRTNTKMYSQRLSRLSPYLSCGALSPRRFYEELRRFTAENVRDNFV 571
Query: 371 YW----VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK----WSQDQKLFESWRDGCT 422
+ L RDY+ ++ L+YG+ LF+ GPR W D+K+ + W G T
Sbjct: 572 QQQYREAILRLSRRDYWHWMGLRYGSLLFYEYGPRPEHTDDIADWRHDRKIVQKWCAGLT 631
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
G P DA M+EL +TGF+++ GRQ L R G DWR+GAEW C LDYDP YGN
Sbjct: 632 GIPFADAAMRELLLTGFVASEGRQGLVWLLSRGYGQDWRLGAEWLGRCSLDYDPFVCYGN 691
Query: 483 WTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
Y + + D + SI A ++D+ G YV WLPQL +P
Sbjct: 692 CAYYSELIRDDFGESVRSIHWLAHHHDQTGIYVKKWLPQLSKIP 735
>gi|408380523|ref|ZP_11178107.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
gi|407745736|gb|EKF57268.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
Length = 492
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 144/500 (28%), Positives = 224/500 (44%), Gaps = 55/500 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+WFR DLR+ D+ AL A D ++P+Y +P H+ T GA +A +L L
Sbjct: 20 ILWFRKDLRISDHAALATAVDEGFRIVPLYIREPEHAGTG------PLGAAQAWWLHHSL 73
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L +L G +L++R G + + L GA AV+ + ++V++ ++ L
Sbjct: 74 EALSASLDALGASLVLRSGAADAALSDLITETGASAVFWNRRYDPSGISVDKALKAKLIA 133
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++ H KL G + VYT F K+++ I
Sbjct: 134 DGIEVRTFAGQILHEPTKLKTGAGGHF------------RVYTPFWKALDGSGEPPEPIP 181
Query: 264 IPSSFGPPP------SVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
P + P + DW +P P +KG + GE A R+ ++
Sbjct: 182 APKALPAPEHWPKSEKLSDWDLLPT-------KPNWAKGFESEWQPGEDGARKRLADFI- 233
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
LK Y+ TR + G + + SP LA G ISP ++ + + D ++
Sbjct: 234 -ASGLKGYR-TRRDFPGEAHVSMLSPHLALGEISPASVWHATRGLSDSYSSEDYIHFRK- 290
Query: 376 ELMWRDY-----FRF--ISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
EL+WRD+ F F ++ K N+ F + W L E WR G TGYP+ID
Sbjct: 291 ELVWRDFSYHLLFHFPDLATKNWNTKFD-------AFPWRHAPDLLEKWRKGQTGYPIID 343
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L TGFM NR R I SFL++D+ IDWR G WF L+D DP SN +W + AG
Sbjct: 344 AGMRQLWQTGFMHNRVRMIVASFLIKDLLIDWREGERWFRDTLVDADPASNAASWQWVAG 403
Query: 489 VGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHG 547
G D R F+ Q + +D EG YV ++P+LKA+P + + P + LK
Sbjct: 404 SGADAAPFFRIFNPISQGEKFDPEGAYVRRFVPELKAMPDKFIHKP---FDAPFAVLKEA 460
Query: 548 NINQNRNQNDSLTRTGRRNN 567
++ + + G+ +
Sbjct: 461 GVSLGKTYPQPIVDHGKARD 480
>gi|397170859|ref|ZP_10494269.1| DASH family cryptochrome [Alishewanella aestuarii B11]
gi|396087333|gb|EJI84933.1| DASH family cryptochrome [Alishewanella aestuarii B11]
Length = 446
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 204/410 (49%), Gaps = 33/410 (8%)
Query: 125 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184
+G ++ R + ++ L + L + L+IR G + LA+ A + A +
Sbjct: 41 QYGLYRSNLWRLKTQLQAFQALTEALAQHNIGLIIRFGDTRSELLQLAEQLQADRLLASE 100
Query: 185 ETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDV 244
T EE R + L + + S ++ P+L S LPD
Sbjct: 101 PTAPEEYQALRALAPALALELQDNNSLLGASLRPEL------------------SRLPDR 142
Query: 245 YTHFRKSIEAKCTVRGCIRI--PSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGG 302
+T FRK +E V R + P + + +++Q +S S
Sbjct: 143 FTQFRKQLEPSLLVTPPKRTQPAGDWLSPAAAATYSQQAMLQQWLGNSVPAS------WD 196
Query: 303 ESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYER 362
E+ AL R+ + W+ + YK++RN ++G Y++ FS L+ G++S R +++V+ +E+
Sbjct: 197 ETKALARLKHFIWQGRHILHYKDSRNALIGEHYASFFSTPLSLGTLSVRRCWQQVEQFEQ 256
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG-PRKLEYKW----SQDQKLFESW 417
+ AN+STYW+ FEL+WR++FR+ KY F G K +Y + Q F SW
Sbjct: 257 QVEANESTYWLKFELLWREFFRWQMRKYQARWFSKTGISGKADYSKPNLNNSQQHAFASW 316
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
G TG P IDANM+ L+ +G MSNRGRQ S+LV D+ +DWR+GA +FE LLDYD
Sbjct: 317 CAGNTGVPFIDANMRLLNQSGLMSNRGRQNVASYLVHDLALDWRLGAAYFEQRLLDYDVA 376
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
SN+GNW Y AG GN E R F+ KQA YD + +V LP + + K
Sbjct: 377 SNWGNWAYIAGYGNS--EARPFNPIKQALWYDPDAAFVRALLPDISGVGK 424
>gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
Length = 481
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 137/479 (28%), Positives = 228/479 (47%), Gaps = 50/479 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+IV + +DLR+ D+ L A +E V+P++ DP + +H A RA FL +
Sbjct: 29 ASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDPGIKKVGFH------AANRAAFLAD 82
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL DL L RG L++R G+P +++ L S GA V+ + N +R L
Sbjct: 83 CLGDLDAGLRERGGRLVVRAGEPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAAL 142
Query: 202 QQVVLSSQSNDKS-TNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ ++ T P +++ G+ DH + V+T + + A+ +R
Sbjct: 143 EGTGAELVEHEAVITALPPGEVVPGSK---------DHFA---VFTPYHRQWSAQ-HLRE 189
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ P P V G VP E +E SP +++ GGE R+ + W++D +
Sbjct: 190 PLGAPRKLSVPSKVRSDG-VPRREDVEGVSPGLAR-----GGEREGRARLAD--WRRDGI 241
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
Y++ +++ G D +++ SP+L G++S ++ V + +L WR
Sbjct: 242 SRYEDLHDDLAG-DGTSRLSPYLHFGALSAAECVHRARA-----VGGAGADAFVRQLCWR 295
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQD-QKLFESWRDGCTGYPLIDANMKELSMTGF 439
D+ + + PR ++ D + +WR+G TGYP++DA M++L+ G+
Sbjct: 296 DFHHQVLAARPAAAHEDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGW 355
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
M NRGR +A SFL + + +DWR+GA F L+D D +N NW + AG G D R R
Sbjct: 356 MHNRGRLLAASFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRPGRVL 415
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL-----------PKERRNFPGGSYIEQIVSLKHG 547
+ QA+ YD EG+YV +W+P+L+ + P+E R Y E +V L G
Sbjct: 416 NPLTQARKYDPEGDYVRHWVPELRGIEGRAVHEPWKRPREERE----GYPEPLVDLAEG 470
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 219/458 (47%), Gaps = 59/458 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ WFR DLR+ DN ALL A+ ++E V+PV+ D P TGA+R FL+E L
Sbjct: 6 LCWFRRDLRLDDNTALLAAYAAAEEVVPVFIFD------DAILSRPDTGAVRVAFLLESL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L +NL RG LL+R G+PE ++ L A AVY ++ L + VR +L+
Sbjct: 60 RNLDENLRARGSRLLLRRGRPEHVLAQLVTETAASAVYFNRDVEPFALARDARVRAHLEG 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR---- 259
+D P+ T Y V+T +R+++ A+ R
Sbjct: 120 RCAVEGFDDGGLTAPEAVRTKAGTPY-------------TVFTPYRQAVLAQPIPRPRLA 166
Query: 260 -GCIRIPSSF--GPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
+R P+ P PS+ D G + SP GGE++A R+ +
Sbjct: 167 PAMLRTPADVPSDPWPSLKDLGFATSV------SPPP-------GGETSAQARLQGFI-- 211
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
++ L Y T ++L D +++ SP+L G +SPR Y + E ++ + E
Sbjct: 212 QNGLARYA-TERDVLSADGTSRLSPYLRFGCLSPRRAYWAAREAVPEGSPGMESW--IAE 268
Query: 377 LMWRDYFRFISLKYGNSLFHL-----GGPRKL--EYKWSQDQKLFESWRDGCTGYPLIDA 429
L+WRD++R I LFH G R+ + W + F+ W G TG+P++DA
Sbjct: 269 LIWRDFYRQI-------LFHFPYVETGAFRRAYDDLAWENNASWFDLWCQGKTGFPIVDA 321
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L TG+M NR R I SFL +D+ IDWR G F L+D D +N G W + A
Sbjct: 322 AMRQLLTTGWMHNRARMIVASFLTKDLLIDWRWGERHFMKHLVDGDLAANNGGWQWAAST 381
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D + R F+ Q + +D G YV ++P+L+A+P
Sbjct: 382 GTDAQPYFRIFNPTAQGKKFDPTGAYVRQYVPELRAVP 419
>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
Length = 477
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 140/461 (30%), Positives = 225/461 (48%), Gaps = 49/461 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN AL +A S V+ ++C+DP + R ++L+
Sbjct: 4 LVLHWHRRDLRLQDNVALAEARQQSAKVVGIFCLDPAILEKE------DVAPARVKYLLA 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CLA+L +N G LLI G P E++P +A+S H VY L+VE ++
Sbjct: 58 CLAELAENYQKAGSQLLIFQGNPLEVLPKVAESLKVHTVYWN-------LDVEPYAQQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHF-----RKSIEAK 255
Q+ ++ + +++ W + H F S P VY+ F +KS A
Sbjct: 111 HQMAIALRQVGA-----KIETFWDQ-LLHAPGKVFTQSKKPYSVYSPFWKNWSQKSKAAP 164
Query: 256 CT-VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
T +R C + S D G++ L +L K GE+A+LG+++ +
Sbjct: 165 VTALRDCQGL--SDAEQKLAKDLGAIALPTLADL-GFSWDKPFTVPVGETASLGQLDRF- 220
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS---YERERVANDSTY 371
++ ++ Y RN D +++ S L G+I R +++ ++ + R + A
Sbjct: 221 -TENFIEKYDGDRN-FPATDGTSRLSAALKFGAIGIRTVWQATETALNHCRSKEAEAGVI 278
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHL----GGPRKLEYK---WSQDQKLFESWRDGCTGY 424
EL WR++ Y + LF GP + E+K W D++ F++W G TGY
Sbjct: 279 TWQQELAWREF-------YQHCLFFFPELAQGPYREEFKDFPWENDEEKFQAWCAGQTGY 331
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
P+IDA M++L+ TG+M NR R I SFL +D+ IDWR G ++F L+D D +N G W
Sbjct: 332 PIIDAAMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQTLVDGDLAANNGGWQ 391
Query: 485 YGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ A G DP+ R F+ QAQ +D E +Y+ +WLP+L L
Sbjct: 392 WSASSGMDPKPLRIFNPYTQAQKFDPEADYIRHWLPELSGL 432
>gi|74025462|ref|XP_829297.1| DNA photolyase [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70834683|gb|EAN80185.1| DNA photolyase, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 848
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 157/525 (29%), Positives = 235/525 (44%), Gaps = 85/525 (16%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM-----VLPVYCVDPR-HSQTTYHFGFPKTGALR 135
V +V+ ND+RV DN AL A +E V+ V VD R +Q + GF + +R
Sbjct: 207 VMVVFAANDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMR 266
Query: 136 AQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
A+F +E LA LR L + LL+R G+PE+ IP L GA V+ + E V
Sbjct: 267 ARFFLETLAALRYKLERELRIPLLVRCGRPEDHIPRLVVECGAIDVFLTTQYTPHEKEVH 326
Query: 195 RLVRKNLQQ---VVLSSQSNDKSTNH---------------------------PQLKLIW 224
+ + + Q V + K+T H P +W
Sbjct: 327 NDIVEAITQRRWVSRDPTAGYKATEHDATVVHPFGVTSASTKVGVKESRLTAAPVAHSVW 386
Query: 225 GTTMYHLDDIPFDHSSL--------PDVYTHFRKSIEAKCTVRGCIR----IP------- 265
TT+ H+DD+P +S+ DV T +I CI +P
Sbjct: 387 QTTLVHIDDLPVPVASMVEGERWYHDDVTT---ANIRPTAAFDRCINRLSDLPARGDLLP 443
Query: 266 -----SSFGPPPSVVDWGSVPLIEQLELHSPK-------VSKGMRFVGGESAALGRVNEY 313
S PPP + G P + +L SP+ ++ GE AA+ RV ++
Sbjct: 444 TTGELSGLEPPP--LYRGRAPTLVELGYGSPEAFIEEEVIATQSSHPPGEDAAIERVLDW 501
Query: 314 FWKKDLLKVYKETR----NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ + + R N + ++ SP+L+ G++SPR YEE++ + E + ++
Sbjct: 502 LMDGGMTSMLRYGRDRRTNTKMYSQRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNF 561
Query: 370 TYW----VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY----KWSQDQKLFESWRDGC 421
L L RDY+ ++ L+YG LF+ GPR W D K+ + W G
Sbjct: 562 VQQQYREALLRLSRRDYWHWMGLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGL 621
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG P DA M+EL++TGF+++ GRQ L R G DWR+GAEW E C +DYDP YG
Sbjct: 622 TGIPFADAAMRELTLTGFVADEGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYG 681
Query: 482 NWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
N Y + + D + +I A ++D+ G YV WLPQL +P
Sbjct: 682 NCAYYSELVRDDFGETVRNIHWLAHHHDQTGIYVKKWLPQLSKIP 726
>gi|414162215|ref|ZP_11418462.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
gi|410879995|gb|EKS27835.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
Length = 485
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 140/460 (30%), Positives = 219/460 (47%), Gaps = 49/460 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR++LR+ D+ AL+ A ++ ++ +Y +D H T G GA +L L
Sbjct: 9 IVWFRDNLRLSDHPALVAAREAGAALVCLYILDDTH---TGKGGNRSLGAATQWWLASSL 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L +L RG +L++R G I+P LAK GA AV+ E + + L +
Sbjct: 66 RALDTDLKKRGQHLVLRKGDARAILPRLAKDTGALAVFWIDSEIPAEAARAQDTAEALHE 125
Query: 204 VVLSSQ--SNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + + +D + P ++ G + V+T F K + ++
Sbjct: 126 IGVETHISPSDLLASPPSIRNKEGNGLR--------------VFTPFWKRVRSQGDPPRP 171
Query: 262 IRIPSSFGPPPSVV------DWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEY 313
+ PP + V DW +LE P + G+R + GES A R+N++
Sbjct: 172 LPAVRKLPPPVASVKSENLKDW-------KLEPTHPDWAGGLRETWTPGESGAHRRLNDF 224
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK-SYERERVANDSTYW 372
+ +K Y R+ G D+++ SP L G ISPR ++ + + E+ +
Sbjct: 225 L--DEAIKGYAIGRD-FPGRDHASHLSPHLRFGEISPRQVFHAARFAAEQHPALSRDVEK 281
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLE-----YKWSQDQKLFESWRDGCTGYPLI 427
L EL WR++ R + + + H R L+ + W +D K +W+ G TGYP++
Sbjct: 282 FLSELGWREFCRHLLFDHPD--LHR---RNLQSSFDDFPWRRDAKALRAWQQGRTGYPIV 336
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M+EL TG M NR R + SFLV+ + +DWR G WF L+D DP SN GNW + A
Sbjct: 337 DAGMRELWHTGTMQNRVRMVTASFLVKHLLLDWREGEAWFWDTLVDADPGSNPGNWQWVA 396
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G G D R F+ Q + +D +G YVA W+P+L LP
Sbjct: 397 GCGADAAPYFRIFNPILQGEKFDPDGAYVAKWVPELAKLP 436
>gi|261335266|emb|CBH18260.1| DNA photolyase, putative [Trypanosoma brucei gambiense DAL972]
Length = 848
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 156/525 (29%), Positives = 234/525 (44%), Gaps = 85/525 (16%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEM-----VLPVYCVDPR-HSQTTYHFGFPKTGALR 135
V +V+ ND+RV DN AL A +E V+ V VD R +Q + GF + +R
Sbjct: 207 VMVVFAANDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMR 266
Query: 136 AQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
A+F +E LA LR L + LL+R G+PE+ IP L GA V+ + E V
Sbjct: 267 ARFFLETLAALRYKLERELRIPLLVRCGRPEDHIPRLVVECGAIDVFLTTQYAPHEKEVH 326
Query: 195 RLVRKNLQQ---VVLSSQSNDKSTNH---------------------------PQLKLIW 224
+ + + Q V + K+ H P +W
Sbjct: 327 NDIVEAINQRRWVSRDPTAGYKAIEHDATVVHPFGATSASTKVGVKESRLTAAPVAHSVW 386
Query: 225 GTTMYHLDDIPFDHSSL--------PDVYTHFRKSIEAKCTVRGCIR----IP------- 265
TT+ H+DD+P +S+ DV T +I CI +P
Sbjct: 387 QTTLVHIDDLPVPVASMVEGERWYHDDVTT---ANIRPTAAFDRCINRLSDLPARGDLLP 443
Query: 266 -----SSFGPPPSVVDWGSVPLIEQLELHSPK-------VSKGMRFVGGESAALGRVNEY 313
S PPP + G P + +L SP+ ++ GE AA+ RV ++
Sbjct: 444 TTGELSGLEPPP--LYRGRAPTLVELGYGSPEAFIEEEVIATQSSHPPGEDAAIERVLDW 501
Query: 314 FWKKDLLKVYKETR----NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ + + R N + ++ SP+L+ G++SPR YEE++ + E + ++
Sbjct: 502 LMDGGMTSMLRYGRDRRTNTKMYSQRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNF 561
Query: 370 TYW----VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY----KWSQDQKLFESWRDGC 421
L L RDY+ ++ L+YG LF+ GPR W D K+ + W G
Sbjct: 562 VQQQYREALLRLSRRDYWHWMGLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGL 621
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG P DA M+EL++TGF+++ GRQ L R G DWR+GAEW E C +DYDP YG
Sbjct: 622 TGIPFADAAMRELTLTGFVADEGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYG 681
Query: 482 NWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
N Y + + D + +I A ++D+ G YV WLPQL +P
Sbjct: 682 NCAYYSELVRDDFGETVRNIHWLAHHHDQTGIYVKKWLPQLSKIP 726
>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 479
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 228/467 (48%), Gaps = 53/467 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ D++ L A + S V+ V+C+DP R ++I
Sbjct: 4 LILFWHRRDLRISDHKGLAAAREKSSQVVGVFCLDPNI------LDQDDVAPARVTYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L+K G LLI G+P IP LAK+ A AVY L+VE +
Sbjct: 58 CLQELQKQYEKVGSQLLILQGQPSSAIPKLAKALEAKAVYWN-------LDVEPYAKDRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVRG 260
QQV S + ++ +W ++ D+I ++ P VYT + + + R
Sbjct: 111 QQV-----SEALKEVNIGVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNN----WSKRK 161
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV--------GGESAALGRVNE 312
+ +F P+ + + + ++ + +++ + FV GE AA R+ E
Sbjct: 162 KQKPIHTFSENPTGLTEKQLKIAKENGIIDLPLAEDLGFVWENELILEPGEEAAQNRLEE 221
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY----EEVKSYERERVAND 368
F + L + Y E RN D +++ S L G IS R ++ E +++ + N+
Sbjct: 222 -FCDRALFE-YDEQRN-FPANDGTSQLSAALKFGVISIRTVWAKTVEAMENTRSDEARNN 278
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHL----GGPRKLEYK---WSQDQKLFESWRDGC 421
W EL WR++ Y +++H GP + +K WS++Q+ F++W +G
Sbjct: 279 IKAWQQ-ELAWREF-------YQQAMYHFPELANGPYRDHFKDFPWSENQEHFQAWCEGK 330
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TGYP++DA M++L+ G+M NR R I +FL +D+ I+W+ G ++F L+D D +N G
Sbjct: 331 TGYPIVDAAMRQLNEIGWMHNRCRMIVANFLTKDLMINWQWGEKYFMQKLMDGDLSANNG 390
Query: 482 NWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
W + A G DP+ R F+ QAQ YD EGEY+ WLP+L +L E
Sbjct: 391 GWQWSASSGMDPKPLRIFNPTTQAQKYDPEGEYIRQWLPELSSLDTE 437
>gi|413955779|gb|AFW88428.1| hypothetical protein ZEAMMB73_274298 [Zea mays]
Length = 396
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 179/312 (57%), Gaps = 26/312 (8%)
Query: 70 YTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFP 129
+ S A +G+ +VWFR DLR+ D+E A +S +LPV+ DPR + GF
Sbjct: 96 FPSGAPAASGRRRTLVWFRADLRLHDHEPFHAAAGASSSLLPVFVFDPRDFGKSPS-GFD 154
Query: 130 KTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE 189
+TG RA FL++ +ADLR++L RG +L++R G+PE +IP LA++ GA AVYA E +
Sbjct: 155 RTGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRD 214
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
E+ E V+K +++ + +K WG+T+YH++D+PF +P Y FR
Sbjct: 215 EVRTEERVQKAVEKEGI------------NVKYFWGSTLYHVEDLPFRLDDMPSNYGGFR 262
Query: 250 KSIEAKCTVRGCIRIPSSFG--PPPSVVDWGSVPLIEQLELHSP-------KVSKGMRFV 300
++++ + VR + P P +V++ G +P + +L L +P K + G +
Sbjct: 263 EAVK-RLDVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMAQDSKPAVGSTLI 321
Query: 301 GGESAALGRVNEYFWKKDLL--KVYKE-TRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
GGE+ AL R+ ++ + + K K T++ + G ++S K SPWLA+G +SPR++YEE+
Sbjct: 322 GGETGALERLKKFAAECSMQPNKADKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEEL 381
Query: 358 KSYERERVANDS 369
K + ++++S
Sbjct: 382 KKHATRAISSES 393
>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 474
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 225/461 (48%), Gaps = 50/461 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L +A + V+ ++C+D + + R ++I
Sbjct: 4 LILFWHRRDLRISDNVGLTQASQEGQTVVGIFCLDENILKRD------DIASARVTYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+K G LLI GKP E IP LA A AVY L+VE RK
Sbjct: 58 CLQHLQKRYKQIGSQLLIMSGKPIEAIPKLATFLEAKAVYWN-------LDVEPYSRKRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAK----- 255
+QV + N ++ N Q+K W ++ ++I F + P VYT F K+ + K
Sbjct: 111 RQV----KENLEAAN-IQVKTFWEQLLHSPEEI-FTSTKKPYSVYTPFWKNWQGKKKSNP 164
Query: 256 ---CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
++G + V+D +P +QL + + GE+AAL ++ +
Sbjct: 165 LNTPVLKGLTEDQLQYTKKIGVID---LPTAKQLGFN---WDNKLILEPGETAALEKLEK 218
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS-----YERERVAN 367
+ + Y+E RN D +++ S L G+I R ++ + + Y E N
Sbjct: 219 F--SNGAISSYQEQRN-FPSLDGTSQLSVALKFGTIGIRTVWAKTQELIENCYSSEVFEN 275
Query: 368 DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGY 424
T+ E+ WR++++++ Y GP + +K W ++ F++W +G TGY
Sbjct: 276 IETW--QKEIAWREFYQYVMYHYPELE---TGPYREHWKNFPWKNNKAHFQAWCEGNTGY 330
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
P++DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D C+N G W
Sbjct: 331 PIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQNLIDGDLCANNGGWQ 390
Query: 485 YGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ A G DP+ R F+ Q Q YD EGEY+ W+ +L+++
Sbjct: 391 WSASSGMDPKPLRIFNPVSQTQKYDPEGEYIRQWVCELRSV 431
>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
Length = 475
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/463 (29%), Positives = 221/463 (47%), Gaps = 47/463 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A S V+ ++C+DP + R +LI
Sbjct: 4 LILFWHRRDLRISDNIGLSTARQRSPHVVGIFCLDPDILEKD------DVAPARVTYLIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L++N G LLI GKP + IP LA+S A AV+ L+VE +
Sbjct: 58 CLQELQQNYQQAGSQLLILKGKPSQAIPILAESLKAQAVFWN-------LDVEPYAQTRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF---------RKSI 252
+QV + Q +T W ++ I VYT F + +
Sbjct: 111 EQVSNALQEKGIATEK-----FWDQLLHAPGKILTLSKEPYKVYTPFWRNWSQELKKSPV 165
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
+A V+G + S ++D + + L +P + GE+AA R+ E
Sbjct: 166 QALEDVQGLNQQQISLAKEAGIIDLPTAKDLGYL-WENP-----LMLNPGETAAKERLQE 219
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERER---VAND 368
+ K + Y+E R+ + D +++ S L G+I R +++ ++ YE R V
Sbjct: 220 FC--KTSINNYQEQRD-LPAIDGTSRLSAALKFGAIGIRTVWQATLELYENSRSDEVRES 276
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYP 425
W EL WR++++ + GP + E++ W D+ LF++W +G TGYP
Sbjct: 277 IQTWQQ-ELAWREFYQHCMYFFPE---LADGPYRKEFREFPWDNDEDLFQAWCEGKTGYP 332
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W +
Sbjct: 333 IVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKLYDGDLSANNGGWQW 392
Query: 486 GAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
A G DP+ R F+ Q+Q YD +GEY+ W+P+LK+L E
Sbjct: 393 SASSGMDPKPLRIFNPASQSQKYDPDGEYIRQWIPELKSLDTE 435
>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
NSW150]
gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
longbeachae NSW150]
Length = 472
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 144/468 (30%), Positives = 223/468 (47%), Gaps = 50/468 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+VWFR DLR+ DN A ++A + V+P+Y D ++S G +A +L
Sbjct: 3 TALVWFRFDLRLNDNPAFIEACSHHQFVIPLYIYDEKNSVL---------GGAQAWWLYH 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L +L RGLNL++R G P EII LAK+ +VY + C E + + R K +
Sbjct: 54 SLTSLSNSLAQRGLNLILRKGDPLEIILDLAKTVSISSVYWNR--CYEPVAISR--DKGI 109
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ +L + S+N G+ ++ I V+T + K C
Sbjct: 110 KATLLERGIDVHSSN--------GSLLHEPWTIRNKSGDYFKVFTPYWK----HCKQLIN 157
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRVNEYFWKK 317
I+ P + P V+ S L + L P ++ RF + GE A ++ E+ +
Sbjct: 158 IQRPMNLEHRPVGVEVQSELLNDWKLL--PTINWAARFSEYWIPGEGGAQQKLKEFI--E 213
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DSTYWVLFE 376
L YK R+ + + +++ SP L G ISP I ++ + + S L E
Sbjct: 214 HHLNGYKNNRDFPIK-NATSRLSPHLHFGEISPWTILRAIELAKLNPNCDLASAEHFLSE 272
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYK-------WSQDQKLFESWRDGCTGYPLIDA 429
L WR++ ++ L+H ++ W D+KL WR G TGYP+IDA
Sbjct: 273 LGWREFSVYL-------LYHFPKLPSENFRNEFDAFPWHNDEKLLSYWRRGLTGYPIIDA 325
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M+EL TG+M NR R IA SFL + + IDWR+GA+WF L+D D +N +W + AG
Sbjct: 326 GMRELWATGYMHNRVRMIAASFLTKGLLIDWRLGADWFLDTLVDADLANNSASWQWVAGC 385
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGS 536
G D R F+ Q+Q +D +G Y+ +W+P+L L + + P S
Sbjct: 386 GADAAPYFRIFNPVLQSQKFDADGSYIRHWVPELSQLDSQSIHAPWES 433
>gi|304321394|ref|YP_003855037.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
HTCC2503]
gi|303300296|gb|ADM09895.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
HTCC2503]
Length = 478
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/454 (29%), Positives = 213/454 (46%), Gaps = 40/454 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+W R DLR DN A+ +A S VL +Y +D T F GA + +L L
Sbjct: 6 ILWLREDLRFDDNPAMREAAASGAPVLCLYVLD---DATAGDFAM---GAAQRWWLHHSL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+++L RG L++R GK EI+P+LAK A V+ + + + + ++ LQ
Sbjct: 60 CAFKEDLETRGGALILRRGKETEIVPALAKEIKASHVFWNRRYMKWQTDPDTEIKSALQD 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + S + G +Y +I VYT + KS++ K R +
Sbjct: 120 MGIKGISCN------------GRLLYEPWEIETKSGDPYKVYTPYWKSLQQKEGPRAALP 167
Query: 264 IPSSFGPPPSVV------DWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
PPS+ DW +P SP ++G + GE A R+ W
Sbjct: 168 RTDKLNAPPSLPSTDRLDDWNLLP-------RSPNWAEGFEPVWTPGEKGARARLRA--W 218
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK-SYERERVANDSTYWVL 374
Y + RN D +++ SP L G ISP ++ V + E + D L
Sbjct: 219 LDTDAASYDDCRNRP-DQDRTSRLSPHLHFGEISPVVLWHSVSDAMEAGDIPKDQGTSFL 277
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKL-EYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
E+ WR+ F + L Y ++ K +++W D+K +W+ G TGYP++DA M++
Sbjct: 278 SEIAWRE-FSYQLLYYHPTMRDQPLMEKFTDFEWDTDKKALNAWQRGRTGYPIVDAGMRQ 336
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L G+M NR R I SFLV+D+ +DWR G WF CL+D DP +N +W + AG G D
Sbjct: 337 LWTEGWMHNRVRMIVGSFLVKDLLLDWRDGMRWFWDCLVDADPANNTASWQWIAGCGADA 396
Query: 494 RE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q++ +D +G Y+ ++P+L+ LP
Sbjct: 397 APFFRIFNPTTQSEKFDPDGAYIRRYVPELRDLP 430
>gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG]
Length = 455
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/479 (29%), Positives = 227/479 (47%), Gaps = 50/479 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+IV + +DLR+ D+ L A +E V+P++ DP + +H A RA FL +
Sbjct: 3 ASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDPGIKKVGFH------AANRAAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL DL L RG L++R G P +++ L S GA V+ + N +R L
Sbjct: 57 CLGDLDAGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAAL 116
Query: 202 QQVVLSSQSNDKS-TNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ ++ T P +++ G+ DH + V+T + + A+ +R
Sbjct: 117 EGTGAELVEHEAVITALPPGEVVPGSK---------DHFA---VFTPYHRQWSAQ-HLRE 163
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ P P V G VP E +E SP +++ GGE GR W++D +
Sbjct: 164 PLGAPRKLSVPSKVRSDG-VPRREDVEGISPGLAR-----GGERE--GRAKLASWRRDGI 215
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
Y++ +++ G D +++ SP+L G++S E V A + + +L WR
Sbjct: 216 SRYEDLHDDLAG-DGTSRLSPYLHFGALS---AAECVHRARAAGGAGADAF--VRQLCWR 269
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQD-QKLFESWRDGCTGYPLIDANMKELSMTGF 439
D+ + + PR ++ D + +WR+G TGYP++DA M++L+ G+
Sbjct: 270 DFHHQVLAARPAAAHEDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGW 329
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
M NRGR +A SFL + + +DWR+GA F L+D D +N NW + AG G D R R
Sbjct: 330 MHNRGRLLAASFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRPGRVL 389
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL-----------PKERRNFPGGSYIEQIVSLKHG 547
+ QA+ YD EG+YV +W+P+L+ + P+E R Y E +V L G
Sbjct: 390 NPLTQARKYDPEGDYVRHWVPELRGIEGRAVHEPWKRPREERE----GYPEPLVDLAEG 444
>gi|330835507|ref|YP_004410235.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
Ar-4]
gi|329567646|gb|AEB95751.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
Ar-4]
Length = 433
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/448 (30%), Positives = 201/448 (44%), Gaps = 62/448 (13%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + FR DLR+ DN L+KA + V+P++ +DPR + P F+I+
Sbjct: 2 ICLFLFRRDLRLEDNTCLIKALRECDEVVPLFIIDPRQVEDN-----PYKSPFAIGFMID 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L +L ++L G L + G PEEIIP + A AVY ++
Sbjct: 57 SLLELDQDLKTMGSRLHLLKGFPEEIIPKI----NADAVYMNEDYTP------------- 99
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVRG 260
S Q +++ + KL+ + F P V+T F ++ K R
Sbjct: 100 ----FSRQRDERIKEKVKGKLVTCEDLLLTKKRFFLKEGKPYSVFTRFYVDVKDKPVRRP 155
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ ++G + D V L+E L F GG AAL +N
Sbjct: 156 EVNNLKNYGEMKDITD---VKLLENLHFQRSS------FKGGRRAALDTLNR-------A 199
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
+ + G +T+ SP+L G +SPR +Y V R +L WR
Sbjct: 200 QTIDYSLRNFPGLPGTTRLSPYLKFGVLSPREVYYSVNEEIRR------------QLYWR 247
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
D+F ++ Y N + G K EY W D LF +W G TGYP++DA M+EL+ T
Sbjct: 248 DFFTLLA--YYNP-YVFGHAYKREYDCVPWVNDTNLFSAWTQGKTGYPIVDAGMRELNNT 304
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFM NR R I FLV+ + +DWR G ++F T L+DYDP N GNW + A G D R R
Sbjct: 305 GFMHNRTRMITAFFLVKVLHVDWRWGEKYFATKLVDYDPSVNNGNWQWVASTGVD-RMFR 363
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKAL 525
F+ Q + +D E Y+ W+P+L+ L
Sbjct: 364 IFNPWLQQKKFDPEAVYIKEWVPELRDL 391
>gi|302517648|ref|ZP_07269990.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
gi|302426543|gb|EFK98358.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
Length = 455
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 140/479 (29%), Positives = 226/479 (47%), Gaps = 50/479 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+IV + +DLR+ D+ L A +E V+P++ DP + +H A RA FL +
Sbjct: 3 ASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDPGIKKVGFH------AANRAAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL DL L RG L++R G P +++ L S GA V+ + N +R L
Sbjct: 57 CLGDLDAGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAAL 116
Query: 202 QQVVLSSQSNDKS-TNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ ++ T P +++ G+ DH + V+T + + A+ +R
Sbjct: 117 EGTGAELVEHEAVITALPPGEVVPGSK---------DHFA---VFTPYHRQWSAQ-HLRE 163
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ P P V G VP E +E SP +++ GGE GR W++D +
Sbjct: 164 PLGAPRKLSVPSKVRSDG-VPRREDVEGISPGLAR-----GGERE--GRAKLASWRRDGI 215
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
Y++ +++ G D +++ SP+L G++S E V A + + +L WR
Sbjct: 216 SRYEDLHDDLAG-DGTSRLSPYLHFGALS---AAECVHRARAAGGAGADAF--VRQLCWR 269
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQD-QKLFESWRDGCTGYPLIDANMKELSMTGF 439
D+ + + PR ++ D + +WR+G TGYP++DA M++L+ G+
Sbjct: 270 DFHHQVLAARPAAAHEDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGW 329
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
M NRGR +A SFL + + +DWR+GA F L+D D +N NW + AG G D R R
Sbjct: 330 MHNRGRLLAASFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRPGRVL 389
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL-----------PKERRNFPGGSYIEQIVSLKHG 547
+ QA+ YD EG+YV W+P+L+ + P+E R Y E +V L G
Sbjct: 390 NPLTQARKYDSEGDYVRQWVPELRGIEGRAVHEPWKRPREERE----GYPEPLVDLAEG 444
>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 483
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 138/457 (30%), Positives = 217/457 (47%), Gaps = 50/457 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+WFR DLR+ DN+AL A S ++PVY +P + T GA +A +L L
Sbjct: 10 ILWFRRDLRLDDNQALNAAHLSGRPIIPVYINEPAAAGTG------PLGAAQAWWLHHSL 63
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L ++L R L++ G E++ ++ K GA AV+ + ++V+ +++ L++
Sbjct: 64 EALDRSLHERQGELVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEK 123
Query: 204 VVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR--- 259
+ ++S H +L+ G T Y VYT F +++E
Sbjct: 124 QAIEARSFGGQLLHEPSRLMTGNGTPYR-------------VYTPFWRALEGAGEAEPPL 170
Query: 260 ---GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYF 314
+R+ S ++ W +P P +KG + GE A R++ +
Sbjct: 171 EAPAKLRLASQRPASETLKSWKLLPT-------KPDWAKGFADLWTPGEQGARERLSAFV 223
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
+D LK YKE R+ P ++ SP LA G ISP I++ + A D ++
Sbjct: 224 --EDELKGYKENRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSNRVPAADIVHFRK 280
Query: 375 FELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
E+ WR++ F F L N G +KW D FE+WR G TGYP++DA
Sbjct: 281 -EIAWREFSYHLLFHFPRLASENWNDRFDG-----FKWRNDDGDFEAWRRGMTGYPIVDA 334
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L G+M NR R I SFL++D+ IDWR G WF L+D DP +N +W + AG
Sbjct: 335 GMRQLWRHGWMHNRVRMIVASFLIKDLMIDWRDGEAWFRDTLVDADPANNAASWQWVAGS 394
Query: 490 GNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G D R F+ Q + +D +G+YV +P+L+ L
Sbjct: 395 GADASPFFRIFNPMLQGETFDPDGDYVRAHVPELQRL 431
>gi|428776176|ref|YP_007167963.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
gi|428690455|gb|AFZ43749.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
Length = 477
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 148/488 (30%), Positives = 228/488 (46%), Gaps = 53/488 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L +A S ++ V+C DP+ Q+ + R ++L+
Sbjct: 4 LILFWHRRDLRLDDNIGLNEAQQHSNKIVGVFCFDPKLLQSD------QVAPARIKYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L G LL P IP LA++ A AV+ + VE RK
Sbjct: 58 CLKELAAGYKKAGSELLFLQADPVTAIPKLAETLNASAVFWNHD-------VEPYGRKRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS------IEAK 255
+ V QS ++ N P + +W ++ +I VYT F K+ E
Sbjct: 111 RAV----QSALEAKNIP-VHTVWDQLLHAPGEILTKGEDPYKVYTPFWKNWQKQPKAEPV 165
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+R + S + V S+P + L L + + GE+AA R+ E F
Sbjct: 166 GQIRHLTGLTDSEQAKSATVGKISLPTLNDLGL---TWDNDLPLLPGETAARERL-EQFC 221
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY---ERERVANDSTYW 372
+ +L Y + RN D ++ S L G+IS R I++ + R A D+
Sbjct: 222 DRAILD-YDQNRN-YPAIDGTSVLSAALKFGAISIREIWQTTVTLWEDTRSDEARDNITA 279
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDA 429
EL WR++++ +L + L GP + ++K W + F++W DG TGYP++DA
Sbjct: 280 WRQELAWREFYQH-ALYFFPEL--ADGPDRDQFKDFPWDNNPDHFQAWCDGKTGYPIVDA 336
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A
Sbjct: 337 AMRQLNTTGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQTLFDGDLAANNGGWQWSASS 396
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL-----------PKERRNFPGGSYI 538
G DP+ R F+ QAQ +D +GEY+ YWLP+L AL P ER N Y+
Sbjct: 397 GMDPKPLRIFNPASQAQKFDPDGEYIRYWLPELNALDTGDLLTGNISPLERENL---GYV 453
Query: 539 EQIVSLKH 546
+ IV K
Sbjct: 454 QPIVDHKQ 461
>gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
Length = 425
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 224/451 (49%), Gaps = 59/451 (13%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
IV F DLRV D+ AL A + V+P++ +DP G P G RA FL E
Sbjct: 3 TVIVLFNRDLRVHDHPALAAACADAWRVVPLFVIDP---------GVP--GGHRAGFLAE 51
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L DLR +L RG +L++R G P LA+ A AVY + + ER + +
Sbjct: 52 SLDDLRGSLRERGGDLVVRQGDPVAETLRLARELPAQAVYVSADVSALAQRRERRLAEEC 111
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRK--SIEAKCTV 258
++ + + + G T+ D + P V+T + + S + + V
Sbjct: 112 ER------------HRMEFRAFPGVTIVPPDALRPSGGGDHYRVFTPYWRVWSGQRRREV 159
Query: 259 RGC---IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
G +RIP ++ G +P+ H P G+ F GGE+ A R+ + W
Sbjct: 160 LGAPAKVRIPEG-------LEAGPLPVAG----HEPH---GL-FRGGETVARERMRQ--W 202
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
K ++ Y + +++ G + ++K SP+L G +SP E E ++ + +V
Sbjct: 203 LKYCVEDYADGHDDLAG-NRTSKLSPYLRFGCLSP---------LELESLSENGDDFVR- 251
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
+L WRD+F ++ + + R +W D+ ++W++G TG P++DA M++L
Sbjct: 252 QLCWRDFFHQVTRAFPR--INRDDYRPQGQEWRDDEDAAQAWKEGRTGVPIVDAGMRQLL 309
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
G+M NR R + SFLVR + +DWR+GAE F LLD D +NYGNW + AG GND R
Sbjct: 310 AEGWMHNRARMVTSSFLVRRLRVDWRVGAEHFFDLLLDGDVSNNYGNWQWVAGTGNDTRP 369
Query: 496 DRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+R + +QA+ +D EGEY+ +LP+L A+P
Sbjct: 370 NRIVNPVRQARRFDPEGEYIRRYLPELDAVP 400
>gi|452824798|gb|EME31798.1| cryptochrome, DASH family [Galdieria sulphuraria]
Length = 570
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 215/478 (44%), Gaps = 62/478 (12%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G AI+WFRN+LR+ DN L A +++E VLP+Y D R S + G R F+
Sbjct: 73 GTAILWFRNNLRLSDNSCLDLA-NTAEAVLPLYVFDKR-SLVRNRLKQQRCGPFRYSFVK 130
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
E + L+ NL +LL+ G E+I L + + + A K ++ E
Sbjct: 131 ESVEQLQNNLRGLFSDLLVEVGTAAEVIRELCAKYSINHIVAPKMIKVSQVATEL----- 185
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
H +W T+ D++ + + Y H ++ +G
Sbjct: 186 ----------------HLNACFVWDCTLLSFDEL------IVNEYQHSFETFYNSVISKG 223
Query: 261 CIRI------------PSSFGPPPS--------VVDWGSVPLIEQLELHSPKVSKGMRFV 300
+I P FG PS V D G L E P+ F
Sbjct: 224 LPKIFELDNSQRPFLKPLPFGYKPSFAIPLPHLVNDLGVENLCTPYEWPFPEPRAVYPFR 283
Query: 301 GGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY-EEVKS 359
GGE +A R+ +YF KK+ L++ + N D STK SPW++ G +S R +Y E +S
Sbjct: 284 GGEDSAKERLTDYFVKKNGLQLIADLENYSGVMDSSTKLSPWISIGCVSVRQVYWEGYRS 343
Query: 360 YERERVANDSTYWVLFELMWRDYFRFISLKYGNSLF-----HLGGPRKLEYKWSQD---- 410
Y + + + W L +WRD+ + L+ G+++F + P YK S
Sbjct: 344 YMKNMDSQVANLW-LKRFLWRDFLYLLCLQEGSAVFRDRTVNEDAPEFPLYKQSATPYET 402
Query: 411 --QKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFE 468
+ ++W +G TGYP IDA++KEL TG++S RGR SFLV ++ W++GAE+FE
Sbjct: 403 ICNQAIQTWLEGRTGYPYIDAHIKELITTGYISFRGRLNVSSFLVHELDGIWQLGAEFFE 462
Query: 469 TCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
L+D+DP N+G W + E ++A YD +G YV WL QL LP
Sbjct: 463 HYLIDHDPVINWGYWYHLYEKKQIGVESIQVDTIEEANKYDPDGFYVKKWLNQLVLLP 520
>gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
Length = 477
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 144/482 (29%), Positives = 222/482 (46%), Gaps = 65/482 (13%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L+ A D S V VY +DP+ T H P R FLIE L
Sbjct: 7 LFWHRRDLRLADNLGLVAATDISPAVTGVYVLDPQLINPTEHL--PPMAPARLWFLIESL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ- 202
+L++ G LL+ G P ++P LA+ GA AV ++ +R V K LQ
Sbjct: 65 VELQQRWREAGSRLLVVKGDPVAVLPQLAQQIGAEAVVWSRDVEPYARERDRQVAKKLQA 124
Query: 203 ---QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+VV+ D+ P+L G Y VY F ++ + +
Sbjct: 125 DGRKVVVDW---DQLLIAPELLKTGGGDPYR-------------VYGPFLRNWRGQVLAK 168
Query: 260 GCIRIPSSFGPPPSVVDW--GSVPLIEQLEL----HSPKVSKGMRFVGGESAALGRVNEY 313
PS+ P +VD +P +E LE H K ++ GE+AAL ++N +
Sbjct: 169 Q----PSTVAAPTGLVDLDPAQLPALESLEALRESHGFKGAEICPCRPGEAAALAQLNSF 224
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
L Y+ RN G ++ S L+ G++SPR + + RE+ ++
Sbjct: 225 C--DGPLLAYEPDRN-FPGTAGTSYLSAALSVGTLSPRQAWCAAQD-SREQARSEEHLQA 280
Query: 374 LF----ELMWRDYFRFISLKYGNSLFHL----GGPRKLE---YKWSQDQKLFESWRDGCT 422
+ EL WR++ Y +LFH GP + + + W ++ F+ W++G T
Sbjct: 281 IAVWEQELGWREF-------YQQALFHFPELADGPYREKWHRFPWENNEDWFDFWKEGQT 333
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
G P+IDA M++L+ TG+M NR R I S+LV+D+ DWR G F +D D +N G
Sbjct: 334 GMPIIDAAMRQLNQTGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGG 393
Query: 483 WTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL-----------PKERRN 531
W + A G DP+ R F+ QA +D G+Y+ W+P+L+ + ERR+
Sbjct: 394 WQWSASSGMDPKPLRIFNPATQASKFDSAGDYIRQWVPELRHVNTKDLLSGEIGALERRD 453
Query: 532 FP 533
+P
Sbjct: 454 YP 455
>gi|378776172|ref|YP_005184602.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|364506979|gb|AEW50503.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 472
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 222/467 (47%), Gaps = 54/467 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+A+VWFR DLR+ DN A ++A E+V+P+Y D + S G +A +L
Sbjct: 4 IALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIYDDKCS---------VLGQAQAWWLHY 54
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L K+L +GL+L++R G P+EII L +G +VY + C E + R K +
Sbjct: 55 SLIALGKSLNQQGLSLVLRKGSPQEIILELVAQYGVESVYWNR--CYEPQVIAR--DKKI 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ ++ + +S N G ++ I + V+T + K +C R
Sbjct: 111 KLALVEREIKVQSFN--------GNLLHEPWTIKNKNGDFFKVFTPYWK----QC--RQI 156
Query: 262 IRIPSSF-------GPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRV 310
+ IPS F G + D G L+ P ++ RF + GE A ++
Sbjct: 157 LNIPSPFILTKRPRGIEIASDDIGKWKLL-------PAINWAARFSEYWIPGEEGAQKKL 209
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DS 369
+E+ L YK R+ + +++ SP L G ISP I ++ + E + S
Sbjct: 210 DEFI--VHHLSGYKRDRD-FPAKNATSRLSPHLHFGEISPWVILRALELAKLEHTCDLAS 266
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
L EL WR++ + L Y RK + W D++L W+ G TGYP+I
Sbjct: 267 VEHFLSELGWREFS--VYLLYHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPII 324
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M+EL TG+M NR R I SFL +D+ IDWR GA+WF L+D D +N +W + A
Sbjct: 325 DAGMRELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVA 384
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G G D R F+ Q+Q +D +G Y+ W+P+L L + + P
Sbjct: 385 GCGADAAPYFRIFNPILQSQKFDPDGVYIRQWIPELAQLNSQSIHQP 431
>gi|425456019|ref|ZP_18835730.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
gi|389802953|emb|CCI18036.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
Length = 474
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 134/457 (29%), Positives = 219/457 (47%), Gaps = 38/457 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA + S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G LLI G P + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK-----SIEAKC 256
QQV+ + Q T +++ W ++ + S VYT F K + +
Sbjct: 111 QQVIAALQ-----TKGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPT 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
T+ + + G + + ++P +E L + GE AA R+ E+
Sbjct: 166 TLENLQGLDENEGE--KLTETINLPTLENLGF---TWQNPLPLTPGEKAANSRLEEFC-- 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWV 373
+ ++ Y+E RN D +++ S L G+I R I+ E+ R + A DS
Sbjct: 219 QGVINNYQEDRN-FPAVDGTSRLSAALKFGAIGIRTIWTATLELLENCRAQEAKDSIITW 277
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL WR++++ Y +G RK + W +++ F++W G TGYP++DA M
Sbjct: 278 QQELAWREFYQHCL--YFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAM 335
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G
Sbjct: 336 RQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGM 395
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 396 DPKPLRIFNPASQTQKFDPEGEYIRQWLPELASVDTE 432
>gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 471
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 222/467 (47%), Gaps = 54/467 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+A+VWFR DLR+ DN A ++A E+V+P+Y D + S G +A +L
Sbjct: 3 IALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIYDDKCS---------VLGQAQAWWLHY 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L K+L +GL+L++R G P+EII L +G +VY + C E + R K +
Sbjct: 54 SLIALGKSLNQQGLSLVLRKGSPQEIILELVAQYGVESVYWNR--CYEPQVIAR--DKKI 109
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ ++ + +S N G ++ I + V+T + K +C R
Sbjct: 110 KLALVEREIKVQSFN--------GNLLHEPWTIKNKNGDFFKVFTPYWK----QC--RQI 155
Query: 262 IRIPSSF-------GPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRV 310
+ IPS F G + D G L+ P ++ RF + GE A ++
Sbjct: 156 LNIPSPFILTKRPRGIEIASDDIGKWKLL-------PAINWAARFSEYWIPGEEGAQKKL 208
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DS 369
+E+ L YK R+ + +++ SP L G ISP I ++ + E + S
Sbjct: 209 DEFI--VHHLSGYKRDRD-FPAKNATSRLSPHLHFGEISPWVILRALELAKLEHTCDLAS 265
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
L EL WR++ + L Y RK + W D++L W+ G TGYP+I
Sbjct: 266 VEHFLSELGWREFS--VYLLYHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPII 323
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M+EL TG+M NR R I SFL +D+ IDWR GA+WF L+D D +N +W + A
Sbjct: 324 DAGMRELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVA 383
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G G D R F+ Q+Q +D +G Y+ W+P+L L + + P
Sbjct: 384 GCGADAAPYFRIFNPILQSQKFDPDGVYIRQWIPELAQLNSQSIHQP 430
>gi|425439515|ref|ZP_18819837.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
gi|389720241|emb|CCH96030.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
Length = 474
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 138/457 (30%), Positives = 219/457 (47%), Gaps = 38/457 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA D S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARDRSPKIIGVFCLDPAILERD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G LLI G P + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK--SIEAKC--- 256
QQV+ + Q T +++ W ++ + S VYT F K S AK
Sbjct: 111 QQVIAALQ-----TKGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPK 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
T+ + + G + + ++P +E L + GE AA R+ E+
Sbjct: 166 TLENLQGLDENEGE--KLAETINLPTLENLGF---TWQNPLPLAPGEKAARSRLEEFC-- 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWV 373
+ ++ Y+E RN D +++ S L G+I R I+ E+ R A DS
Sbjct: 219 QGVINNYQEDRN-FPAFDGTSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKDSIITW 277
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL WR++++ Y +G RK + W +++ F++W G TGYP++DA M
Sbjct: 278 QQELAWREFYQHCL--YFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAM 335
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G
Sbjct: 336 RQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGM 395
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 396 DPKPLRIFNPASQTQKFDPEGEYIRQWLPELASVDTE 432
>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
bv. viciae 3841]
Length = 483
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 135/472 (28%), Positives = 225/472 (47%), Gaps = 62/472 (13%)
Query: 75 LKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
+ ++ I+WFR DLR+ DN+AL A S ++P+Y +P + T GA
Sbjct: 1 MAKDAAKPVILWFRKDLRLDDNQALTAAHRSGRPIIPLYIGEPAAAGTG------PLGAA 54
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
+A +L L L ++L R L++ G+ E++ + K GA AV+ + ++++
Sbjct: 55 QAWWLHHSLEALNRSLQKRHGRLVLASGEALEVLRAFIKESGAEAVFWNRRYDPAGISID 114
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE- 253
++ L++ + ++S H +L+ G + P+ VYT F +++E
Sbjct: 115 ARIKHELEKQAIEARSFGGQLLHEPSRLMTG------NGTPYR------VYTPFWRALEG 162
Query: 254 ---------AKCTVRGCIRIPSS-----FGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF 299
A +R ++P+S + P+ DW + ++L +P
Sbjct: 163 GDEPEPPLEAPAELRLTSQLPTSETLESWKLLPTKPDWAG----DFVDLWTP-------- 210
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
GE A R++ + +D L+ YKE R+ P ++ SP LA G ISP I++ +
Sbjct: 211 --GEEGAQQRLHAFV--EDALEGYKENRDYPARP-ATSMLSPHLALGEISPARIWDATRG 265
Query: 360 YERERVANDSTYWVLFELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLF 414
+ A D ++ E+ WR++ F F L N G +W D F
Sbjct: 266 LSQRVPAADIVHFRK-EIAWREFSYHLLFHFPRLASANWNDRFDG-----LEWCNDSDDF 319
Query: 415 ESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDY 474
E+WR G TGYP++DA M++L G+M NR R I SFL++D+ IDWR G WF L+D
Sbjct: 320 EAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDA 379
Query: 475 DPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
DP +N +W + AG G D R F+ Q + +D G+YV ++P+L+ L
Sbjct: 380 DPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDPNGDYVKTYVPELREL 431
>gi|428770667|ref|YP_007162457.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
gi|428684946|gb|AFZ54413.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
Length = 473
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 145/457 (31%), Positives = 224/457 (49%), Gaps = 40/457 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ I W R DLR+ DN L KA+ + V+ V+C+DP R ++L+
Sbjct: 1 MIIFWHRRDLRINDNIGLAKAYTRDKKVIGVFCLDPNI------LNRDDIAPARVKYLLG 54
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR--- 198
CL L+ G +LLI H PEEIIPSLA+ A AVY L+VE R
Sbjct: 55 CLEALKTKYQKLGSDLLIFHNTPEEIIPSLAEKLKADAVYWN-------LDVEPFSRHRD 107
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK--- 255
KN+ Q L +S + T QL G + + + VYT F ++ EA+
Sbjct: 108 KNVSQA-LKEKSIETQTFWDQLLHSPGEILSKSNQTAYT------VYTPFWRNWEAQPKS 160
Query: 256 CTVRGCIRIPSSFGPPPSVV-DWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
V ++ ++V + G++ + +L P + GE +AL R+ EYF
Sbjct: 161 SPVDSPQQLTGLNDLEKTIVKELGTINIPSLNDLGFP-WDADLPLSPGEESALERL-EYF 218
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE----EVKSYERERVANDST 370
+ L+ Y+ RN D +++ S L G+IS R I++ E+ + + +
Sbjct: 219 -CQSLIYNYECDRNYPFL-DGTSQLSAALKFGAISVRTIWKKSQAELTNCNSDEARENII 276
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLID 428
W E+ WR++++ Y G R+ ++ W D+K F++W +G TGYP++D
Sbjct: 277 AWQK-EIAWREFYQHCL--YFFPQLAEGAYREQFKQFPWENDEKKFQAWCEGKTGYPIVD 333
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG+M NR R I SFL +D+ IDWR G ++F L D D +N G W + A
Sbjct: 334 AAMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQKLYDGDLAANNGGWQWSAS 393
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G DP+ R F+ QAQ +D E EY+ WLP+++ L
Sbjct: 394 SGMDPKPLRIFNPASQAQKFDPEAEYIRTWLPEIRHL 430
>gi|425443748|ref|ZP_18823817.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
gi|389735029|emb|CCI01399.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
Length = 474
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/457 (29%), Positives = 219/457 (47%), Gaps = 38/457 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA + S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G LLI G P + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK-----SIEAKC 256
QQV+ + Q T +++ W ++ + S VYT F K + +
Sbjct: 111 QQVIAALQ-----TKGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPT 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
T+ + + G + + ++P +E L + GE AA R+ E+
Sbjct: 166 TLETLQGLDENEGE--KLTETINLPTLENLGF---TWQNPLPLTPGEKAASSRLEEFC-- 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWV 373
+ ++ Y+E RN D +++ S L G+I R I+ E+ R + A DS
Sbjct: 219 QGVINNYQEDRN-FPAFDGTSRLSAALKFGAIGIRTIWTATLELLENCRAQEAKDSIITW 277
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL WR++++ Y +G RK + W +++ F++W G TGYP++DA M
Sbjct: 278 QQELAWREFYQHCL--YFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAM 335
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G
Sbjct: 336 RQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGM 395
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 396 DPKPLRIFNPASQTQKFDPEGEYIRQWLPELASVDTE 432
>gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43]
gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43]
Length = 484
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/455 (29%), Positives = 217/455 (47%), Gaps = 40/455 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AIVWFRNDLRV DN ALL A S + V+PVY ++P + G R +L
Sbjct: 12 AIVWFRNDLRVNDNAALLAA-SSHKQVVPVYILEPAANTRA-------IGGARKWWLHHS 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA L + L + G L++ G P +I L + A AVY + L+ + ++ L+
Sbjct: 64 LAKLGEKLADLGAPLMLMRGDPALLIAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDALR 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ +S H ++ G ++ VY+ F ++IE R
Sbjct: 124 AQDIVVESFAGQLLHEPTRVRTGNDTFY------------KVYSPFWRAIEGGIEDREPA 171
Query: 263 RIP---SSFGPPP---SVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYF 314
P ++ P ++ DWG +P P ++G+R + GE A R++E+
Sbjct: 172 PAPDRLTALANAPQSETLSDWGLLPT-------KPDWARGLRETWKPGEDGAHERLDEFV 224
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
+ + Y R+ + G + +++ SP LA+G I+P I + +K+ + + D T
Sbjct: 225 --SERVCGYASLRD-VPGVESTSRLSPHLANGEITPAQIIQALKASDADASPKDRTV-FR 280
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
E+ WR++ + + + R + W D+ +W+ G TGYP++DA M+EL
Sbjct: 281 KEVGWREFSYHLLVNEPDLPQQNHNSRFDGFPWKDDETALLAWQKGVTGYPIVDAGMREL 340
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
TG+M NR R + SFL + + +DWR G WF L+D DP SN +W + AG G D
Sbjct: 341 WRTGWMHNRVRMVTASFLTKHLMVDWREGERWFWDTLVDADPASNAASWQWVAGSGADAA 400
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q + +D +G+YV ++P+L LP +
Sbjct: 401 PYFRVFNPIIQGEKFDPDGDYVRRYVPELANLPSK 435
>gi|146078221|ref|XP_001463490.1| putative DNA photolyase [Leishmania infantum JPCM5]
gi|134067576|emb|CAM65855.1| putative DNA photolyase [Leishmania infantum JPCM5]
Length = 932
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 157/578 (27%), Positives = 241/578 (41%), Gaps = 127/578 (21%)
Query: 72 SKALKRNGKGVAIVWFRNDLRVLDNEALLKA----------WDSSEMVLPVYCVDPR-HS 120
S +R+G V +V+ DLRV DN+ L A S V+ V +D R +
Sbjct: 219 SSGTQRHGCCVLVVFSSTDLRVHDNQLLAFASVCARAAAAEAGSPVPVIGVCVLDYRTFA 278
Query: 121 QTTYHFGFPKTGALRAQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHA 179
Q + GF + RAQFL++ +A LR+ L + + LL+R G+PEE +P LA GA
Sbjct: 279 QPSTVGGFFRQSPQRAQFLLDTVAALRRKLEDTLHVPLLVRCGRPEEHVPRLAVELGAMD 338
Query: 180 V-------------------------YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKS 214
V + +E S+E V V + + +Q +
Sbjct: 339 VLMTTQYAPHERRVQALMVRRLRAGTWVSREEVSDEAVVAGAVGQGASATPVGAQCGSAA 398
Query: 215 TNH------------------------------------PQLKLIWGTTMYHLDDIPFDH 238
P + +W +T+ HLDD+P
Sbjct: 399 EEDDPLIAVVEHASCGVGGQHPYHCGSSLPLHCRAAAAPPMVHSVWQSTLVHLDDLPTPL 458
Query: 239 SSLPDVYTHFRKSI-------------------EAKCTVRGCIRIPSS---FGPPPSVVD 276
+ + + + + E T + +P+ +G V
Sbjct: 459 TVMKEGERWYHDDVTVSTIRPTEPYDKATALLAELPLTWQAAALLPTEDERYGRAGPSVL 518
Query: 277 WGSVPLIEQLELHSPKVSKGMRFV-------------GGESAALGRVNEYFWK---KDLL 320
G++P +E L +S ++G F GE AAL R+ + + LL
Sbjct: 519 RGALPRLEDLG-YSAAAARGTDFAFQEVIATQSSHPDAGEDAALARLQNWLAQGGVTSLL 577
Query: 321 KVYKETR-NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV------ 373
+ +E R N + + SP++A G++SPR YE ++ + +E N +V
Sbjct: 578 RYGRERRTNTKMYSQKLARVSPYIALGALSPRKYYEVLREFAQE---NQRDAFVQQQFRE 634
Query: 374 -LFELMWRDYFRFISLKYGNSLFHLGGPRKLEY----KWSQDQKLFESWRDGCTGYPLID 428
L L RDY+ ++ L++G+ LF GP +W D+K+ + W DG TG P D
Sbjct: 635 GLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFAD 694
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M+EL TGF++ GRQ L R G DWR+GAEW E C LDYDP YGN+ Y G
Sbjct: 695 AAMRELVGTGFVAQEGRQALAWLLTRGYGQDWRVGAEWMERCSLDYDPFVCYGNYAYSCG 754
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+ D + ++ A +D+ G YV WLPQL +P
Sbjct: 755 LMLDDFGEPVRNVYYLAHQHDQTGIYVKKWLPQLSKVP 792
>gi|390437938|ref|ZP_10226447.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
gi|389838649|emb|CCI30571.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
Length = 474
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/458 (29%), Positives = 220/458 (48%), Gaps = 40/458 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA + S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G LLI G P + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYRQKGSQLLIIRGNPSQTLVNLASNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK--SIEAKC--- 256
QQV+ + Q T +++ W ++ + S VYT F K S AK
Sbjct: 111 QQVIAALQ-----TKGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPK 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
T+ + + G + + ++P +E L + GE AA R+ E+
Sbjct: 166 TLENLQGLDENEGE--KLAETINLPTLENLGF---TWQNPLPLTPGEKAATSRLEEFC-- 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY----EEVKSYERERVANDSTYW 372
+ ++ Y+E RN D +++ S L G+I R I+ E +++ E N W
Sbjct: 219 QGVINNYQEDRN-FPAFDGTSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITW 277
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDAN 430
EL WR++++ Y +G RK + W +++ F++W G TGYP++DA
Sbjct: 278 QQ-ELAWREFYQHCL--YFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAA 334
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G
Sbjct: 335 MRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSG 394
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 395 MDPKPLRIFNPASQTQKFDLEGEYIRQWLPELASVDTE 432
>gi|428301495|ref|YP_007139801.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
gi|428238039|gb|AFZ03829.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
Length = 476
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/459 (28%), Positives = 224/459 (48%), Gaps = 44/459 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A D + V+ ++C+DP + +R ++I
Sbjct: 4 LILFWHRRDLRIADNTGLATARDRTHRVIGLFCLDPNILNPDH------VAPVRVTYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L++ G LLI G+P ++IP+LA + GA AV+ +VE +K
Sbjct: 58 CLQALQQRYAEVGSQLLIVQGEPTQVIPTLATALGAKAVFWN-------WDVEPYSQKRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
V+ + + P W ++ D+I +S VY+ F K+ +K
Sbjct: 111 HTVIDALKEQGIDYLAPN----WDQLLHTPDEIRTGSNSTYTVYSPFWKNWYSKPKAEPV 166
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPK----VSKGMRFVG-GESAALGRVNEYFWK 316
+ + G + ++ + +EL S K V G + GE+ A R+ E+ ++
Sbjct: 167 ATLANVAGLTSAQMEIARKNGV--IELPSAKDLGFVWDGDLIIAPGEATAQSRLEEFCYR 224
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY---ERERVANDSTYWV 373
+ Y+E RN D +++ S L G I R++++ S R A DS
Sbjct: 225 A--INNYQEDRN-FPAIDGTSQLSAALKFGVIGIRHVWQATLSAIENSRSDEARDSIRTY 281
Query: 374 LFELMWRDYFRFISLKYGNSLFHL----GGPRKLEYK---WSQDQKLFESWRDGCTGYPL 426
EL WR++++ + ++H GP + +K W + + +++W +G TGYP+
Sbjct: 282 QQELAWREFYQHV-------MYHFPELADGPYRDAFKGFPWETNDQHYQAWCEGKTGYPI 334
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ G+M NR R I SFL +D+ +D R+G ++F L+D D +N G W +
Sbjct: 335 VDAAMRQLNEIGWMHNRCRMIVASFLTKDLLLDPRLGEKYFMQKLIDGDLSANNGGWQWS 394
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
A G DP+ R F+ QAQ +DR+G+Y+ W+P+L+++
Sbjct: 395 ASSGMDPKPIRIFNPASQAQKFDRDGDYIRQWVPELRSV 433
>gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340782929|ref|YP_004749536.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340557080|gb|AEK58834.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
Length = 476
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 145/466 (31%), Positives = 223/466 (47%), Gaps = 56/466 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV FRNDLR+ D+ AL A VLPVY RH+ +Y G+ + E L
Sbjct: 7 IVLFRNDLRLADHPALWYA-AQRGPVLPVYL---RHAADSY-------GSAWRWWHGESL 55
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L+ L RGL LL+R G + ++P + ++ GA AVY + + + ++ ++ ++
Sbjct: 56 LKLQAALAQRGLPLLLRSGTAKAVLPEIVRASGADAVYWNRRYDRDGIAEDQELKSLFKE 115
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHL-DDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + ++S P L+ HL + P+ V+T F K++ A+ +
Sbjct: 116 LGVEARS------FPGNLLV--EPWEHLREGQPY------RVFTPFWKAMLARHRFPQPL 161
Query: 263 RIPSSFGPPPSV------VDWGSVPLIEQLELHSPKVSKGM--RFVGGESAALGRVNEYF 314
P S+ P ++ WG P H P S G+ + GE AA R+ ++
Sbjct: 162 AEPESYRAPTAIPASEDLARWGWHP-------HHPDWSIGLARHWEVGEEAAWRRLRDFV 214
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW-- 372
+ L Y E RN + G + ++ SP+LA G ISPR I+ + R+A + W
Sbjct: 215 --DEGLAHYAEGRN-LPGKPFVSRLSPYLAHGEISPRQIW-----WHLSRLAEEQGAWRR 266
Query: 373 ----VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
L EL WR++ + + + P + W QD +W TGYP+ID
Sbjct: 267 NVDAFLRELGWREFSWHLLYHFPDLPREPLRPEFQRFPWRQDPAALRAWTRARTGYPIID 326
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M+EL +G+M NR R I SFLV+D+ I W+ G WF L+D D +N +W + AG
Sbjct: 327 AGMRELWESGWMHNRVRMIVASFLVKDLRIPWQEGEAWFWDTLVDADLANNSASWQWVAG 386
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G D R F+ QAQ +D +G+YV WLPQL+ LP + + P
Sbjct: 387 CGADAAPYFRVFNPVLQAQKFDPQGDYVRRWLPQLQRLPADHIHAP 432
>gi|398011032|ref|XP_003858712.1| DNA photolyase, putative [Leishmania donovani]
gi|322496922|emb|CBZ31992.1| DNA photolyase, putative [Leishmania donovani]
Length = 932
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 157/578 (27%), Positives = 241/578 (41%), Gaps = 127/578 (21%)
Query: 72 SKALKRNGKGVAIVWFRNDLRVLDNEALLKA----------WDSSEMVLPVYCVDPR-HS 120
S +R+G V +V+ DLRV DN+ L A S V+ V +D R +
Sbjct: 219 SAGTQRHGCCVLVVFSSTDLRVHDNQLLAFASVCARAAAAEAGSPVPVIGVCVLDYRTFA 278
Query: 121 QTTYHFGFPKTGALRAQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHA 179
Q + GF + RAQFL++ +A LR+ L + + LL+R G+PEE +P LA GA
Sbjct: 279 QPSTVGGFFRQSPQRAQFLLDTVAALRRKLEDTLHVPLLVRCGRPEEHVPRLAVELGAMD 338
Query: 180 V-------------------------YAQKETCSEELNVERLVRKNLQQVVLSSQSNDKS 214
V + +E S+E V V + + +Q +
Sbjct: 339 VLMTTQYAPHERRVQALMVRRLRAGTWVSREEVSDEAVVAGAVGQGASATPVGAQCGSAA 398
Query: 215 TNH------------------------------------PQLKLIWGTTMYHLDDIPFDH 238
P + +W +T+ HLDD+P
Sbjct: 399 EEDDPLIAVVEHASCGVGGQHPYHCGSSLPLHCRAAAAPPMVHSVWQSTLVHLDDLPTPL 458
Query: 239 SSLPDVYTHFRKSI-------------------EAKCTVRGCIRIPSS---FGPPPSVVD 276
+ + + + + E T + +P+ +G V
Sbjct: 459 TVMKEGERWYHDDVTVSTIRPTEPYDKATALLAELPLTWQAAALLPTEDERYGRAGPSVL 518
Query: 277 WGSVPLIEQLELHSPKVSKGMRFV-------------GGESAALGRVNEYFWK---KDLL 320
G++P +E L +S ++G F GE AAL R+ + + LL
Sbjct: 519 RGALPRLEDLG-YSAAAARGTDFAFQEVIATQSSHPDAGEDAALARLQNWLAQGGVTSLL 577
Query: 321 KVYKETR-NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV------ 373
+ +E R N + + SP++A G++SPR YE ++ + +E N +V
Sbjct: 578 RYGRERRTNTKMYSQKLARVSPYIALGALSPRKYYEVLREFAQE---NQRDAFVQQQFRE 634
Query: 374 -LFELMWRDYFRFISLKYGNSLFHLGGPRKLEY----KWSQDQKLFESWRDGCTGYPLID 428
L L RDY+ ++ L++G+ LF GP +W D+K+ + W DG TG P D
Sbjct: 635 GLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFAD 694
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M+EL TGF++ GRQ L R G DWR+GAEW E C LDYDP YGN+ Y G
Sbjct: 695 AAMRELVGTGFVAQEGRQALAWLLTRGYGQDWRVGAEWMERCSLDYDPFVCYGNYAYSCG 754
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+ D + ++ A +D+ G YV WLPQL +P
Sbjct: 755 LMLDDFGEPVRNVYYLAHQHDQTGIYVKKWLPQLSKVP 792
>gi|340059461|emb|CCC53845.1| putative DNA photolyase, fragment, partial [Trypanosoma vivax Y486]
Length = 622
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/491 (27%), Positives = 219/491 (44%), Gaps = 73/491 (14%)
Query: 109 VLPVYCVDPR-HSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNR-GLNLLIRHGKPEE 166
V+ V VD R +Q + GF + +RA+F +E +A LR+ L + LL+R G+PEE
Sbjct: 12 VVAVTVVDYRTFAQPSPVGGFFRQSPMRARFFLETVAKLREKLEGELHVPLLVRCGRPEE 71
Query: 167 IIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKS---------TNH 217
IP L A V+ + E V + + S++ D S T H
Sbjct: 72 HIPRLVVECCATDVFLTTQYTPHEKEVHDAIVNAINSRRWVSRTTDASCKVTVHDATTLH 131
Query: 218 PQ------------------------LKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
P + +W TT+ H+DD+ +S+P+ + +
Sbjct: 132 PHGDSATHSHAASDGKPHKESGEAPVVHSVWQTTLVHIDDLSVPVASMPEGERWYHDEVT 191
Query: 254 A----------KCTVR--------GCIRIPSSF-GPPPSVVDWGSVPLIEQLELHSPK-- 292
+C R + P+ G P+ + GS+P ++QL SP+
Sbjct: 192 KANIRPTAPFDRCIARLSQLPKRLDLLPTPAELRGVEPTPLYRGSIPTLDQLGYGSPEAF 251
Query: 293 -----VSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETR----NEMLGPDYSTKFSPWL 343
++ GE AA+ RV ++ + + + R N + ++ SP++
Sbjct: 252 IEEEVIATQSSHPPGEDAAIQRVQDWLLDSGMTSMLRYGRQRRTNTKMYSQRLSRVSPYI 311
Query: 344 ASGSISPRYIYEEVKSYE----RERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG 399
+ G++SPR YE ++++ R+R L L RDY+ ++ L++G LF+ G
Sbjct: 312 SCGALSPRKFYENLRAFASENLRDRFVQQQYREALLRLSRRDYWHWMGLRFGPLLFYEYG 371
Query: 400 PRKLEYK----WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRD 455
PR W +QK+ + W G TG P DA M+EL +TG++++ GRQ L R
Sbjct: 372 PRPEHTDDIPDWHHNQKIVQKWCAGLTGIPFADAAMRELRLTGYVAHEGRQALAWLLTRG 431
Query: 456 MGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYV 515
G DWR+GAEW E C LD+D YGN+ Y + + D + +I A ++D+ G YV
Sbjct: 432 YGQDWRIGAEWMERCSLDFDAFVCYGNFAYFSELIRDDFGEPVHNIHWLAHHHDQTGIYV 491
Query: 516 AYWLPQLKALP 526
WLP L +P
Sbjct: 492 KKWLPLLSKIP 502
>gi|384246200|gb|EIE19691.1| DNA photolyase [Coccomyxa subellipsoidea C-169]
Length = 407
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 163/316 (51%), Gaps = 25/316 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A++WFRNDLRV DNEAL A S +LPVYC DPR ++ + G TG RAQF+++
Sbjct: 85 AAVMWFRNDLRVHDNEALAIANRDSSSLLPVYCFDPREYSSSGN-GINSTGPYRAQFIVD 143
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ +LR +L G +L++R GKPEE++ LAK GA V+ E EE E+ V L
Sbjct: 144 AVMELRNSLRAIGSDLIVRIGKPEEVLTDLAKKVGASKVFCHSEVTYEEDLTEKQVAAAL 203
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ QLK WG+T+Y DD+PF LP + FR + A V+
Sbjct: 204 K------------VEDIQLKASWGSTLYSPDDLPFKLGDLPATHGEFRSKV-ASLAVKQP 250
Query: 262 IRIPSSFGPPP---SVVDWGSVPLIEQLELHS-PKVSKGMRFVGGESAALGRVNEYFWKK 317
+ P+ P + G +P + QL L + + GGES L ++N +
Sbjct: 251 EKAPAQLKGKPVGSQGISSGDIPTLAQLGLQPLSNIPGAPKCRGGESEGLAQLNRLLSRT 310
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF-E 376
+ K + +S + SPWLA G +SPR +Y EV++ R+ +N + ++ E
Sbjct: 311 SM----KAGPGSNISAAFSNEVSPWLALGCLSPRRMYAEVQA--RQASSNPTVVSLMHAE 364
Query: 377 LMWRDYFRFISLKYGN 392
L+WRD+FRF + KY +
Sbjct: 365 LIWRDFFRFTAKKYAS 380
>gi|383775319|ref|YP_005459885.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
gi|381368551|dbj|BAL85369.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
Length = 443
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/469 (28%), Positives = 220/469 (46%), Gaps = 58/469 (12%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+V F DLRV DN AL +A +E V+P+Y +DP + + + R++FL +
Sbjct: 3 TAVVLFTRDLRVHDNPALAEACAGAERVIPLYVLDPTLAGLSGN---------RSRFLHQ 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CLADLR+ L RG +L++R G P +A+ A ++ + ER +
Sbjct: 54 CLADLREQLRERGGDLVVRTGDPVAEAIRVAREHDAATIHLAADVSGYARRRERRLTDEG 113
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ ++ + HP + ++ + P V+T + + I ++ R
Sbjct: 114 ERHRIAVRL------HPGVTVVDPGVLR-----PGGGGDCYKVFTPYFR-IWSQTRWRAE 161
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGE--SAALGRVNEYFWKKDL 319
+P P + G +P I + SP ++G VG +A L ++ Y
Sbjct: 162 APVPQRVTLPDGIAA-GHLPAIPDGD--SPHAAEGGETVGRRRLTAWLSSIDGYG----- 213
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
+ Y + ++ L D +++ SP+L G +SP + E ++ + E +L W
Sbjct: 214 IDAYPDVHDD-LPADRTSRLSPYLRWGCLSPLALAEAARTRDAEAFVR--------QLCW 264
Query: 380 RDYFRFISL---KYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
RD++ ++ K GG R W D+ W+DG TG P++DA M++L
Sbjct: 265 RDFYYQVARVFPKLSTEPLRPGGDRG----WRYDEDALAHWQDGLTGVPVVDAGMRQLRA 320
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
G+M NR R I +FL + +G+DWR G +WF L+D D +N GNW + AG GND R
Sbjct: 321 EGWMHNRARLITAAFLTKHLGLDWRAGVDWFFRWLIDGDVPNNSGNWQWVAGTGNDTRPG 380
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKA-----------LPKERRNFPG 534
R F+ +QA +D EG YV ++P+LK LPK ++PG
Sbjct: 381 RRFNPIRQALRFDPEGVYVRRYVPELKGIDGPAVHQPWRLPKPVLDYPG 429
>gi|425452606|ref|ZP_18832423.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
gi|389765542|emb|CCI08602.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
Length = 474
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/458 (29%), Positives = 220/458 (48%), Gaps = 40/458 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA + S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G L+I G P + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK--SIEAKC--- 256
QQV+ + Q T +++ W + + S VYT F K S AK
Sbjct: 111 QQVIAALQ-----TKGIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKARPK 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
T+ + + G + + ++P +E L + GE AAL R+ E+
Sbjct: 166 TLENLQGLDENEGE--KLTETINLPTLENLGF---TWQNPLPLTPGEKAALSRLEEFC-- 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY----EEVKSYERERVANDSTYW 372
+ ++ Y+E RN D +++ S L G+I R I+ E +++ E N W
Sbjct: 219 QGVINNYQEDRN-FPAFDGTSRLSAALKFGTIGIRTIWTATLELLENCRAEEAKNSIITW 277
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDAN 430
EL WR++++ Y +G RK + W +++ F++W G TGYP++DA
Sbjct: 278 QQ-ELAWREFYQHCL--YFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAA 334
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G
Sbjct: 335 MRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSG 394
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 395 MDPKPLRIFNPASQTQKFDPEGEYIRQWLPELASVDTE 432
>gi|442611770|ref|ZP_21026473.1| Cryptochrome [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441746515|emb|CCQ12535.1| Cryptochrome [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 412
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 133/219 (60%), Gaps = 1/219 (0%)
Query: 302 GESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE 361
GE +A V YF + YK+TRN + G +ST+ S +L+ GS++ + + + +E
Sbjct: 186 GEFSAQQHVLNYF-ASHAAQTYKQTRNALYGSLFSTRLSIFLSFGSLNVQNVLSHLWQFE 244
Query: 362 RERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGC 421
NDST W+ FEL+WR+YF + + YG LF G + S LF++W +G
Sbjct: 245 ANYGENDSTRWIEFELLWREYFYWYAHFYGRVLFRKRGLSEHAPLSSFYDGLFKAWCEGF 304
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
T PL++A M+EL TG++SNR RQI+ S+L+ ++GIDWR GA +FE LLDYD N+G
Sbjct: 305 TASPLVNAIMRELKSTGWISNRARQISASYLIYELGIDWRHGAAYFEQALLDYDVAINWG 364
Query: 482 NWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLP 520
NW Y AGVG DPR R+F+I KQ +D +G Y WL
Sbjct: 365 NWQYIAGVGADPRGGRHFNIQKQTDQFDPDGHYRRTWLT 403
>gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
Length = 471
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 221/467 (47%), Gaps = 54/467 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+A+VWFR DLR+ DN A ++A E+V+P+Y D + S G +A +L
Sbjct: 3 IALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIYDDKCS---------VLGQAQAWWLHH 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L K+L +GL+L++R G P+EII L +G +VY + C E + R K +
Sbjct: 54 SLIALGKSLNQQGLSLVLRKGDPQEIILELVAQYGVESVYWNR--CYEPQVIAR--DKKI 109
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + + +S N G ++ I + V+T + K +C R
Sbjct: 110 KLALGEREIKVQSFN--------GNLLHEPWTIKNKNGDFFKVFTPYWK----QC--RQI 155
Query: 262 IRIPSSF-------GPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRV 310
+ IPS F G + D G L+ P ++ RF GE A ++
Sbjct: 156 LNIPSPFMLTKRPRGIEITSDDLGKWKLL-------PAINWAARFSEYWTPGEEGAQKKL 208
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DS 369
+E+ L YK R+ + +++ SP L G ISP I ++ + E+ + S
Sbjct: 209 DEFIVHH--LSGYKRERD-FPAKNATSRLSPHLHFGEISPWVILRALELAKLEQTCDLAS 265
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
L EL WR++ + L Y RK + W D++L W+ G TGYP+I
Sbjct: 266 VEHFLSELGWREFS--VYLLYHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPII 323
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M+EL TG+M NR R I SFL +D+ IDWR GA+WF L+D D +N +W + A
Sbjct: 324 DAGMRELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVA 383
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G G D R F+ Q+Q +D +G Y+ W+P+L L + + P
Sbjct: 384 GCGADAAPYFRIFNPVLQSQKFDPDGIYIRQWIPELAQLNSQSIHQP 430
>gi|424914362|ref|ZP_18337726.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850538|gb|EJB03059.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 507
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 136/469 (28%), Positives = 221/469 (47%), Gaps = 50/469 (10%)
Query: 72 SKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT 131
+ +L ++ I+WFR DLR+ DN+AL A S ++P+Y +P + T
Sbjct: 22 TASLAKDAIKPVILWFRRDLRLDDNQALNAAHLSGRPIIPLYINEPAAAGTG------PL 75
Query: 132 GALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEEL 191
GA +A +L L L ++L R L++ G E++ ++ K GA AV+ + +
Sbjct: 76 GAAQAWWLHHSLEALDRSLHERQGGLVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGI 135
Query: 192 NVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRK 250
+V+ +++ L++ + ++S H +L+ G+ T Y VYT F +
Sbjct: 136 SVDTHIKQELEKQAIEARSFGGQLLHEPSRLMTGSGTPYR-------------VYTPFWR 182
Query: 251 SIEAKCTVRGCIRIPSSF------GPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGG 302
++E + P+ ++ W +P P +K + G
Sbjct: 183 ALEGAGEAEPPLEAPAKLRLAAQRPASETLKSWKLLPT-------KPDWAKDFTDLWTPG 235
Query: 303 ESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYER 362
E A R++ + +D LK YKE R+ P ++ SP LA G ISP I++ +
Sbjct: 236 EQGARERLSAFV--EDELKGYKENRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSN 292
Query: 363 ERVANDSTYWVLFELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESW 417
A D ++ E+ WR++ F F L N G +KW D FE+W
Sbjct: 293 RVPAADIVHFRK-EIAWREFSYHLLFHFPRLASENWNDRFDG-----FKWRNDDGDFEAW 346
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
R G TGYP++DA M++L G+M NR R I SFL++D+ IDWR G WF L+D DP
Sbjct: 347 RRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKDLMIDWRDGEAWFRDTLVDADPA 406
Query: 478 SNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+N +W + AG G D R F+ Q + +D +G+YV +P+L+ L
Sbjct: 407 NNAASWQWVAGSGADASPFFRIFNPMLQGETFDPDGDYVRAHVPELQRL 455
>gi|428779785|ref|YP_007171571.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
gi|428694064|gb|AFZ50214.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
Length = 476
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 224/456 (49%), Gaps = 39/456 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L +A + VL V+C DP+ + + R ++L+
Sbjct: 3 LVLFWHRRDLRLKDNIGLFQAHQKTAKVLGVFCFDPQLLKKD------QVAPARIKYLLG 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L++N G +LLI + P I +LA++ A V+ ++ +R V+ L
Sbjct: 57 CLQELQENYRRVGSDLLILNADPVTAISNLAQTLNATGVFWNQDIEPYSRKRDRAVQSAL 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA--KCTVR 259
++ ++ Q+ W ++ DI VYT F K+ + K T
Sbjct: 117 EEQGITVQT------------FWDQLLHSPGDILTKSDEPYKVYTPFWKNWQKQDKATPT 164
Query: 260 GCIR----IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
G I+ + S V G +PL + +L ++ + GESAA R+ ++F
Sbjct: 165 GEIKSLDGLTSEEHRKADTV--GVIPLPKLNDLGFSWENE-LPLTPGESAARDRL-QWFC 220
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE---RERVANDSTYW 372
+ +L Y + RN + ++ S L G+I R ++E E R A D+
Sbjct: 221 DRAILD-YDQNRN-YPAIEGTSILSAALKFGAIGIREVWEATNQAEENTRSDEARDNINA 278
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDA 429
EL WR++++ +L + L GP + ++K W +Q FE+W +G TGYP++DA
Sbjct: 279 WRQELAWREFYQH-ALYFFPELAK--GPYREQFKSFPWENNQDHFEAWCNGETGYPIVDA 335
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ TG+M NR R I SFL +D+ I+W+ G +F L D D +N G W + A
Sbjct: 336 AMRQLNTTGWMHNRCRMIVASFLTKDLIINWQWGEAYFMQTLFDGDLAANNGGWQWSASS 395
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G DP+ R F+ QAQ +D +GEY+ YWLP+L ++
Sbjct: 396 GMDPKPLRIFNPASQAQKFDPDGEYIRYWLPELNSI 431
>gi|443646532|ref|ZP_21129464.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335725|gb|ELS50187.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
Length = 474
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 134/460 (29%), Positives = 216/460 (46%), Gaps = 44/460 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA + S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G LLI GKP + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYRQKGSQLLIIRGKPSQTLVNLAGNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
QQV+ + Q T +++ W + + S VYT F K+ R
Sbjct: 111 QQVIAALQ-----TKGIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKAR-- 163
Query: 262 IRIPSSF--------GPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
P++ + + ++P +E L + GE AA + E+
Sbjct: 164 ---PTTLENLQGLDKNEGEKLTETINLPTLENLGF---TWQNPLPLTPGEKAANSTLEEF 217
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDST 370
+ ++ Y+E RN D +++ S L G+I R I+ E+ R + A DS
Sbjct: 218 C--QGVINNYQEDRN-FPAVDGTSRLSAALKFGTIGIRTIWTATLELLENCRAQEAKDSI 274
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLID 428
EL WR++++ Y +G RK + W +++ F++W G TGYP++D
Sbjct: 275 ITWQQELAWREFYQHCL--YFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVD 332
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A
Sbjct: 333 AAMRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSAS 392
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 393 SGMDPKPLRIFNPASQTQKFDPEGEYIRQWLPELASVDTE 432
>gi|425462955|ref|ZP_18842418.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
gi|389823910|emb|CCI27577.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
Length = 474
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 137/457 (29%), Positives = 219/457 (47%), Gaps = 38/457 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA + S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G LLI G P + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK--SIEAKC--- 256
QQV+ + Q T +++ W + + S VYT F K S AK
Sbjct: 111 QQVIAALQ-----TKGIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPK 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
T+ + + G + + ++P +E L + GE AA R+ E+
Sbjct: 166 TLENLQGLDENEGE--KLAETINLPTLENLGF---TWQNPLPLAPGEKAARSRLEEFC-- 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWV 373
+ ++ Y+E RN D +++ S L G+I R I+ E+ R + A DS
Sbjct: 219 QGVINNYQEDRN-FPAFDGTSRLSAALKFGAIGIRTIWTATLELLENCRAQEAKDSIITW 277
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL WR++++ Y +G RK + W +++ F++W G TGYP++DA M
Sbjct: 278 QQELAWREFYQHCL--YFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAM 335
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G
Sbjct: 336 RQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGM 395
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 396 DPKPLRIFNPASQTQKFDPEGEYIRQWLPELASVDTE 432
>gi|336322699|ref|YP_004602666.1| deoxyribodipyrimidine photo-lyase [Flexistipes sinusarabici DSM
4947]
gi|336106280|gb|AEI14098.1| Deoxyribodipyrimidine photo-lyase [Flexistipes sinusarabici DSM
4947]
Length = 460
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 222/453 (49%), Gaps = 40/453 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++WFR DLR+ DN L E+ LP++ D G K R F+
Sbjct: 3 TVLWFRRDLRIKDNPILSAP---CEVCLPIFIFDKNI------LGDFKANDPRITFIFNK 53
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ L+ +L+ G+NL+I +G P+EI L K G + V+ ++ + +R + + +
Sbjct: 54 VKKLKNDLIKNGMNLVIFYGCPDEIFRYLKKE-GYNKVFFSQDYTKRSIERDRQISEIID 112
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
++ ++H D+ + + V+T F ++ + + I
Sbjct: 113 TTIVRDN-----------------FLFHPSDVRKNDGTPYKVFTPFYRTAKNQLDESNFI 155
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGG--ESAALGRVNEYFWK--K 317
P ++ ++ ++ +IE E+ +S + + FV ++ A + EY + K
Sbjct: 156 EFPFNYSKIAGF-NYDNIYIIENSEIVKKPISIENIGFVENYVDNFAADKSPEYLCERLK 214
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+L+ Y+ R E D ++ P L G+IS R + VK+ + + ++ + +L
Sbjct: 215 NLINNYESNR-EYPALDETSHLGPHLRFGTISIRELVRFVKTLKEDGFQTET---FMKQL 270
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR++F + + +S F+ + + W D KLFE W+ G TG P++DA M++L+ T
Sbjct: 271 LWREFFNSVLYNFPHSEFN--NFKNVNIPWENDLKLFEHWKSGTTGVPVVDAAMRQLNKT 328
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED- 496
G+M NR R + SFL +D+ IDWR G E+F+ L DY+ N G+W + AG G D +
Sbjct: 329 GYMHNRLRMVVASFLTKDLHIDWRWGEEYFKQKLFDYEASYNIGSWQWAAGTGCDAQPYF 388
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKALPKER 529
R F+ +QA+ +D+ E++ W+P+L+++ R
Sbjct: 389 RVFNPYRQAEKFDKNAEFIKMWVPELQSIKAGR 421
>gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
Length = 471
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 220/467 (47%), Gaps = 54/467 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+A+VWFR DLR+ DN A ++A E+V+P+Y D + S G +A +L
Sbjct: 3 IALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIYDDKCS---------VLGQAQAWWLHH 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L K+L +GL L++R G P+EII L +G +VY + C E + R K +
Sbjct: 54 SLIALGKSLNQQGLCLVLRKGAPQEIILELVAQYGVESVYWNR--CYEPQAIAR--DKKI 109
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + + +S N G ++ I + V+T + K +C R
Sbjct: 110 KLALGEREIKVQSFN--------GNLLHEPWTIKNKNGDFFKVFTPYWK----QC--RQI 155
Query: 262 IRIPSSF-------GPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRV 310
+ IPS F G + D G L+ P ++ RF GE A ++
Sbjct: 156 LNIPSPFMLTKRPRGIKITSDDLGKWKLL-------PAINWAARFSEYWTPGEEGAQKKL 208
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DS 369
+E+ L YK R+ + +++ SP L G ISP I ++ + E+ + S
Sbjct: 209 DEFI--VHHLSGYKRERD-FPAKNATSRLSPHLHFGEISPWVILRALELAKLEQTCDLAS 265
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
L EL WR++ + L Y RK + W D++L W+ G TGYP+I
Sbjct: 266 VEHFLSELGWREFS--VYLLYHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPII 323
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M+EL TG+M NR R I SFL +D+ IDWR GA+WF L+D D +N +W + A
Sbjct: 324 DAGMRELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVA 383
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G G D R F+ Q+Q +D +G Y+ W+P+L L + + P
Sbjct: 384 GCGADAAPYFRIFNPVLQSQKFDPDGVYIRQWIPELAQLNSQSIHQP 430
>gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
Length = 436
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/446 (28%), Positives = 215/446 (48%), Gaps = 41/446 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+++ WFR DLR+ DN LLKA VLP++ D T PK A R F+
Sbjct: 5 ISVFWFRRDLRLEDNTGLLKALQGPTPVLPIFIFD-----TEILCQVPKNDA-RVNFIYN 58
Query: 142 CLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ L N+ + ++ I HGKP EI +L K AV+A + L + +++
Sbjct: 59 TIETLNTNIKKKHKSSIAIFHGKPIEIFNTLIKKHTIDAVFANHDYEPHALKRDTAIKE- 117
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+L++ S T Q+ ++ ++I S VYT ++ + +
Sbjct: 118 ----LLANNSISFHTYKDQV-------IFEKNEIIKSDKSPYVVYTPYKNKWKENFDPKI 166
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
++ S+ + V+ ++P E +R +G ES+++ V E+ +
Sbjct: 167 HLKNSSNCLESNNFVNNTNLPFFE------------LRDIGFESSSIT-VPEFIITITFI 213
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
+ Y+ TRN + ++K P L G++S R I + + +++ +W EL+WR
Sbjct: 214 EGYETTRNYPGATNGTSKIGPHLRFGTVSIRKIVKHAIN------SDNKVFWN--ELIWR 265
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
++F I + N++ + P+ +W ++ FE W+ G TGYPL+DA M+EL+ TGFM
Sbjct: 266 EFFMQILWHFPNTVNNAFRPKYDRIEWRNNEAEFEKWKTGQTGYPLVDAGMRELNATGFM 325
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYF 499
NR R + SFL + + IDWR G +F LLD+D +N GNW + AG G D R F
Sbjct: 326 HNRVRMLTASFLCKHLLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIF 385
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+ Q +D++ YV W+P+L+
Sbjct: 386 NPSTQIDKFDKQKTYVNQWVPELQEF 411
>gi|407789335|ref|ZP_11136436.1| DASH family cryptochrome [Gallaecimonas xiamenensis 3-C-1]
gi|407206693|gb|EKE76643.1| DASH family cryptochrome [Gallaecimonas xiamenensis 3-C-1]
Length = 405
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 159/294 (54%), Gaps = 30/294 (10%)
Query: 236 FDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK 295
FD + ++ F+KS+ A R C+ P S PL P
Sbjct: 108 FDTAEAGATFSQFKKSMAAP-QPRSCLAAPPS------------SPLAAPTLAPLPGT-- 152
Query: 296 GMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE 355
RF GE AA R+ + + L YK +RN +LG +S++ S +LA G ++ ++++
Sbjct: 153 -FRFEPGEEAANERLLHFV--RQHLSHYKASRNGLLGDSFSSQLSAYLAEGLLAIDHVWQ 209
Query: 356 EVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFE 415
V S A +L EL+WR++F G +F GGP+ ++DQ+L +
Sbjct: 210 AVHSAP----AGPGRQQLLDELLWREFFHHWLAGQGARVF-TGGPKG-----ARDQRL-K 258
Query: 416 SWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYD 475
+W+ G TG PL+DA M+EL TG+MSNR RQ A SFLV D+G DWR GA+WFE LLDY
Sbjct: 259 AWQQGQTGLPLVDAAMRELLATGYMSNRARQNAASFLVHDLGQDWRAGADWFEQHLLDYQ 318
Query: 476 PCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKER 529
+N+GNW Y AG G +PR YF + Q+Q+YD + Y+ +WLP+L LP R
Sbjct: 319 VSANWGNWAYIAGHGANPRAI-YFDVAWQSQHYDPDALYLRHWLPELAELPTAR 371
>gi|397665892|ref|YP_006507429.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395129303|emb|CCD07533.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 143/459 (31%), Positives = 218/459 (47%), Gaps = 54/459 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+A+VWFR DLR+ DN A ++A E+V+P+Y D + S G +A +L
Sbjct: 3 IALVWFRQDLRLTDNPAFIEACFHHEIVIPLYIYDDKCS---------VLGQAQAWWLHH 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L K+L +GL+L++R G P+EII L +G +VY + C E + R K +
Sbjct: 54 SLIALGKSLNQQGLSLVLRKGSPQEIILELVAQYGVESVYWNR--CYEPQVIAR--DKKI 109
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + + +S N G ++ I + V+T + K +C R
Sbjct: 110 KLALGEREIKVQSFN--------GNLLHEPWTIKNKNGDFFKVFTPYWK----QC--RQI 155
Query: 262 IRIPSSF-------GPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRV 310
+ IPS F G + D G L+ P ++ RF GE A ++
Sbjct: 156 LNIPSPFMLTKRPRGIEITSDDLGKWKLL-------PAINWAARFSEYWTPGEEGAQKKL 208
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DS 369
+E+ L YK R+ + +++ SP L G ISP I ++ + E+ + S
Sbjct: 209 DEFIVHN--LSGYKRERD-FPAKNATSRLSPHLHFGEISPWVILRALELAKLEQTCDLAS 265
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
L EL WR++ + L Y RK + W D++L W+ G TGYP+I
Sbjct: 266 VEHFLSELGWREFS--VYLLYHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPII 323
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M+EL TG+M NR R I SFL +D+ IDWR GA+WF L+D D +N +W + A
Sbjct: 324 DAGMRELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVA 383
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G G D R F+ Q+Q +D +G Y+ W+P+L L
Sbjct: 384 GCGADAAPYFRIFNPVLQSQKFDPDGIYIRQWIPELAQL 422
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 129/450 (28%), Positives = 213/450 (47%), Gaps = 39/450 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSE-MVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
I WFR DLR+ DN ALL A D+S V+PV+ D + F P R QFL++
Sbjct: 3 IHWFRRDLRLRDNTALLAAADASGGAVIPVFIFD--DAILGGRFASPA----RTQFLLDS 56
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L L + GL+L++R G+P + +L + GAH V ++ + + +++ L+
Sbjct: 57 LTALDGELRSLGLHLVLRRGEPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRELR 116
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK-----CT 257
++S + ++ ++++ VYT + K A+
Sbjct: 117 AAGYRAESYKDAV------------IFEMNEVVTAAGQPYTVYTPYAKRWRARLESEPVR 164
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
V+G +P P D +P + L +P + RF GE+AA + +
Sbjct: 165 VQG---VPELTAIPLPASD--PLPALNDLLPTAP--TSVPRFATGETAARAALEHFI--H 215
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ + Y R+ ++ +++ SP+L G +SPR + V + W+ EL
Sbjct: 216 NAIANYATARD-LVAIAGTSRLSPYLRFGVLSPR---QCVVAARAAPSGPGPESWI-GEL 270
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR+++ + + ++L P W D LF +W+ G TGYP++DA M++L
Sbjct: 271 IWREFYIQVLYHFPHALRGSFKPVYDRIVWPNDPALFAAWQQGRTGYPIVDAAMRQLQQE 330
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED- 496
G+M NR R I SFL +D+ IDWR G F L+D DP +N G W + AG G D +
Sbjct: 331 GWMHNRARMIVASFLTKDLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPYF 390
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q Q +D +G YV ++P+L +P
Sbjct: 391 RIFNPVSQGQKFDPDGAYVRRYVPELAGVP 420
>gi|218246283|ref|YP_002371654.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
Length = 481
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 131/463 (28%), Positives = 225/463 (48%), Gaps = 47/463 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA S V+ ++C D + +R +LI
Sbjct: 4 LILFWHRKDLRISDNIGLAKARQKSSKVVGIFCFDSNILEQN------DIAPVRIAYLIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L++ G NLL G+P IIP LA A AV+ L+VE ++
Sbjct: 58 CLQELQQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFW-------NLDVEPYSQRRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC----- 256
+QV+ + + T + W +++ +I VYT F K+ E +
Sbjct: 111 EQVIQALKEQGIKT-----QTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSIT 165
Query: 257 ----TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
++ G + +++D +P +++L + + GE+AA R++
Sbjct: 166 NNLESLEGLTQTELQQAKNVNIID---LPTVQEL---GYRWDYPLILSPGETAAAERLD- 218
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERER---VAND 368
++ + Y+E RN + +++ SP L G I R +++ +K+ E R V
Sbjct: 219 -YFCDAAINEYQEQRN-FPAIEGTSQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRES 276
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYP 425
W EL WR++++ L + L GP + +++ W ++ LF++W +G TGYP
Sbjct: 277 IVTWQK-ELAWREFYQH-CLYFFPELAE--GPYREDFQDFPWDNNEVLFQAWCEGKTGYP 332
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D +N G W +
Sbjct: 333 IVDAAMRQLNETGWMHNRCRMIVASFLTKDLMINWQWGEKYFMQTLIDGDLAANNGGWQW 392
Query: 486 GAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
A G DP+ R F+ QAQ +D + +Y+ WLP+L++L E
Sbjct: 393 SASSGMDPKPLRIFNPASQAQKFDPDADYIRQWLPELRSLDTE 435
>gi|146303224|ref|YP_001190540.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
5348]
gi|145701474|gb|ABP94616.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
5348]
Length = 435
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 141/492 (28%), Positives = 221/492 (44%), Gaps = 73/492 (14%)
Query: 87 FRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADL 146
FR DLR+ DN LL+A + V+PV+ +DPR P A F+++ L DL
Sbjct: 7 FRRDLRLDDNTCLLRALQECDEVVPVFVLDPRQLGDN-----PYKSAFALGFMVDSLLDL 61
Query: 147 RKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVL 206
L +R L I G PE+++P L A+Y ++ LN + +R+ ++ V
Sbjct: 62 DMQLKHRSSRLHILQGYPEKVLPELK----VEAIYFNEDYTPFSLNRDNAIRETMRGRVK 117
Query: 207 SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF---RKSIEAKCTVRGCIR 263
S + L+ + P+ V+THF + +E + ++ +R
Sbjct: 118 SCED----------LLLTPKDFFVRKGKPYT------VFTHFYNDARKLEVRKPMKNDMR 161
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVY 323
+ +P E L+L +V +G+ GG L R+ +
Sbjct: 162 NYLTL----------DLPGTEVLKL---EVERGI--PGGRQEGLKRLER-------ARNL 199
Query: 324 KETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYF 383
+ G + +TK SP++ G +SPR +Y V R +L WRD++
Sbjct: 200 NYSMRNFPGVEGTTKLSPYIKFGVVSPREVYWAVNEEIRR------------QLYWRDFY 247
Query: 384 RFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
++ Y +F G K EY W ++ E+W+ G TGYP++DA M+EL+ TGFM
Sbjct: 248 TLLAY-YNPHVF--GHSYKREYDCIPWKWNEAHLEAWKQGKTGYPIVDAGMRELNETGFM 304
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
NR R I SFLV+ + +DWR+G +F T L+DYDP N GNW + A G D R F+
Sbjct: 305 HNRTRMITASFLVKVLHVDWRIGERYFATKLVDYDPSVNNGNWQWVASTGAD-YMFRVFN 363
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRN----FPGGSYIEQIVSLKHGNINQNRNQN 556
Q + +D + Y+ W+P+LK LP E+ + F Y IV +
Sbjct: 364 PWLQQRKFDPDAVYIKTWVPELKDLPAEKIHEIYRFKVSGYPSPIVDYSEEVKKARKMYE 423
Query: 557 DSLTRTGRRNNF 568
DS+ +R F
Sbjct: 424 DSVALCSKRGLF 435
>gi|422303261|ref|ZP_16390615.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
gi|389791796|emb|CCI12426.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
Length = 474
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 134/458 (29%), Positives = 220/458 (48%), Gaps = 40/458 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA + S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILERD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G LLI G P + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK-----SIEAKC 256
QQV+ + Q T +++ W ++ + S VYT F K + +
Sbjct: 111 QQVIAALQ-----TKGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPT 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
T+ + + G + + ++P +E L + GE AA R+ E+
Sbjct: 166 TLENLQGLDENEGD--KLTETINLPTLENLGF---TWQNPLPLTPGEKAAHSRLEEFC-- 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY----EEVKSYERERVANDSTYW 372
+ ++ Y+E RN D +++ S L G+I R I+ E +++ E N W
Sbjct: 219 QGVINNYQEDRN-FPAFDGTSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITW 277
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDAN 430
EL WR++++ L + L G RK + W +++ F++W G TGYP++DA
Sbjct: 278 QQ-ELAWREFYQH-CLYFFPELAE-GAYRKEFRHFPWQDNEEHFQAWCQGQTGYPIVDAA 334
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G
Sbjct: 335 MRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSG 394
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 395 MDPKPLRIFNPASQTQKFDPEGEYIRQWLPELASVDTE 432
>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 480
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 136/455 (29%), Positives = 215/455 (47%), Gaps = 34/455 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A + V+ V+C+DP R ++I
Sbjct: 5 LVLFWHRRDLRIRDNLGLAAARKRTPKVVGVFCLDPGI------LNGDDIAPARVSYMIG 58
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LA+L++N + G LLI GKPEE IP+LA + GA AVY + +VE R+
Sbjct: 59 SLAELQENYQSAGSELLILKGKPEEAIPNLASALGAAAVYWNR-------DVEPYARERD 111
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF-RKSI-EAKCTVR 259
V + + D ++ W + D + VYT F RK I + K
Sbjct: 112 PNVASALKDRDIESS----TQYWDQLLLPPDALKTGAGEPYKVYTPFWRKWIRQEKQPPA 167
Query: 260 GCIRIPSSFGPPPSVV--DWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+ P + G++ L L + + GE+AAL ++ ++ +
Sbjct: 168 STFAAATGLSPHEKSLANKAGNIDLPTAKALGY-EWENELLLQPGEAAALAQLEKFCDDR 226
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK-SYER---ERVANDSTYWV 373
++ Y + R+ ST S L G++ R ++E +Y R E + W
Sbjct: 227 RVIAEYDQQRDYPSIAGTST-LSAALKFGTLGIRTVWEAASDAYSRARSEETHRNIRTWQ 285
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRK---LEYKWSQDQKLFESWRDGCTGYPLIDAN 430
EL WR++++ + + N GP + ++ W D+ LF++W +G TGYP++DA
Sbjct: 286 Q-ELAWREFYQSVMYTFPN---LAEGPYREPLKDFPWDNDEDLFQAWCEGKTGYPIVDAA 341
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFL +D+ IDWR G ++F L D D +N G W + A G
Sbjct: 342 MRQLNQTGWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQHLFDGDLSANNGGWQWSASSG 401
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
DP+ R F+ QA+ YD E EY+ WLP+++ L
Sbjct: 402 MDPKPLRIFNPASQAKKYDPEAEYIREWLPEIRHL 436
>gi|397662777|ref|YP_006504315.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395126188|emb|CCD04368.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 139/459 (30%), Positives = 216/459 (47%), Gaps = 54/459 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+A++WFR DLR+ DN A ++A ++V+P+Y D + S G +A +L
Sbjct: 3 IALMWFRQDLRLTDNPAFIEACSHHDIVIPLYIYDDKCS---------VLGQAQAWWLHH 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L K+L +GLNL++R G P+EII L +VY + + + ++ ++ L
Sbjct: 54 SLIALGKSLNQKGLNLVLRKGSPQEIIVELVAQHNVESVYWNRSYEPQVIARDKKIKLAL 113
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + QS + G ++ I + V+T + K +C R
Sbjct: 114 GEREIKVQSFN------------GNLLHEPWTIKNKNGDFFKVFTPYWK----QC--RQI 155
Query: 262 IRIPSSF-------GPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRV 310
+ IPS F G + D G L+ P ++ RF GE A ++
Sbjct: 156 LNIPSPFMLTKRPRGIEITSDDLGKWKLL-------PAINWAARFSEYWTPGEEGAQKKL 208
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DS 369
NE+ L YK R + + +++ SP L G ISP I ++ + E+ + S
Sbjct: 209 NEFVVHH--LSGYKRDR-DFPAKNATSRLSPHLHFGEISPWVILRALELAKLEQTCDLAS 265
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
L EL WR++ + L Y RK + W D++L W+ G TGYP+I
Sbjct: 266 VEHFLSELGWREFS--VYLLYHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPII 323
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M+EL TG+M NR R I SFL +D+ IDWR GA+WF L+D D +N +W + A
Sbjct: 324 DAGMRELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVA 383
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G G D R F+ Q+Q +D +G Y+ W+P+L L
Sbjct: 384 GCGADAAPYFRIFNPVLQSQKFDPDGVYIRQWIPELAQL 422
>gi|320589803|gb|EFX02259.1| DNA photolyase [Grosmannia clavigera kw1407]
Length = 893
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 159/592 (26%), Positives = 255/592 (43%), Gaps = 133/592 (22%)
Query: 71 TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEM-----VLPVYCVD--------- 116
++ + ++ V I R DLRV DN L + + +LP+Y
Sbjct: 11 SNPSTEKPDSNVLIYILRRDLRVADNRILHEVSTNPTKYNFTHMLPLYVFAANQIEVSGF 70
Query: 117 -PRHSQTTYHF--------GFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEI 167
PR S TT + G+ + G RA+F+ ECLAD++++L + G L IR G E+
Sbjct: 71 IPRSSNTTSPYPEAKSKIVGYWRCGPHRARFISECLADVKQSLESLGSGLSIRVGMLPEV 130
Query: 168 IPSLAKSFGAH-----AVYAQKETCSEELNVERLVRKNLQQVVL-----SSQSNDKSTNH 217
+ + A AV+ +E SEE E + +++ + ++ + +
Sbjct: 131 VERMIAGLTAEGHRVSAVWMAEEDGSEEEADENEIGTMCEELGIHYYLWPNEKHFIAEYV 190
Query: 218 PQLKLIWGTTMYHLDDIPFDHS------SLPDVYTHFRKSIEA-------KCTVRGCIRI 264
P + + + + + D P +H+ LPD YT ++K E V +
Sbjct: 191 PSIPVPFTISGVYTDK-PSNHAIVPSLDELPDTYTQYQKKCEPLRQRPAEPLPVPRASTL 249
Query: 265 PSSFGPP--------PSVVDWGSVPLIEQLE--------LHSPKVSKGMRFV----GGES 304
P+ P P D LI L L+ K+ K + + GGE+
Sbjct: 250 PTYLPAPTQSLPFVIPDDKDGIEAALIAPLLRRDCDNRFLYEVKICKKVPWATILEGGET 309
Query: 305 AALGRVNEYFWKKD--LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYER 362
A R+ + F ++ L+ Y E ++ +LG +S++ S +L+ G ++ R +++ + YE
Sbjct: 310 EANKRLRDLFLPENAGLVAGYAEKKDGLLGRQFSSRLSGYLSQGCLTARLVHQALVQYED 369
Query: 363 ERVANDS--------------TYWVLFELMWRDYFRFISLKYGNSLFHLGG--------- 399
+ND+ ++ + EL+WRD+ R ++ + + H G
Sbjct: 370 G--SNDAMAAAEGFGGGENEGSHALRKELLWRDFMRLNGHRFKDVIDHQEGFRGKLGRDI 427
Query: 400 --------------------------------PRKLEYKWSQDQK------LFESWRDGC 421
PR W Q+Q W+ G
Sbjct: 428 VYKRETSADSEEEEEEPELPEKPTMQKFTWFSPRADMADWDQEQSPEQTANYLRRWQLGT 487
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG LIDA+ +EL TGF SNR R + +F + M IDWR GAEW+E L+DYD SN+G
Sbjct: 488 TGLSLIDASQRELMYTGFTSNRARMVVSNFFAKRMQIDWRCGAEWYEMMLMDYDVYSNWG 547
Query: 482 NWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNF 532
NW Y AGVGNDPR +R + KQA +YD +G YV WLP++ L + R F
Sbjct: 548 NWQYAAGVGNDPRGIERDLNPVKQAFDYDPKGLYVRAWLPEVARLKELRHLF 599
>gi|425471493|ref|ZP_18850353.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
gi|389882607|emb|CCI36943.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
Length = 474
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 134/457 (29%), Positives = 218/457 (47%), Gaps = 38/457 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA + S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G LLI G P + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK-----SIEAKC 256
QQV+ + Q +++ W ++ + S VYT F K + +
Sbjct: 111 QQVIAALQKKGI-----EVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPT 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
T+ + + G + + ++P +E L + GE AA R+ E+
Sbjct: 166 TLENLQGLDENEGD--KLTETINLPTLENLGF---TWQNPLPLTPGEKAAHSRLEEFC-- 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWV 373
+ ++ Y+E RN D +++ S L G+I R I+ E+ R A DS
Sbjct: 219 QGVINNYQEDRN-FPAFDGTSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKDSIITW 277
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL WR++++ L + L G RK + W +++ F++W G TGYP++DA M
Sbjct: 278 QQELAWREFYQH-CLYFFPELAE-GAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAM 335
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G
Sbjct: 336 RQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGM 395
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 396 DPKPLRIFNPASQTQKFDPEGEYIRQWLPELASVDTE 432
>gi|254480196|ref|ZP_05093444.1| FAD binding domain of DNA photolyase, putative [marine gamma
proteobacterium HTCC2148]
gi|214039758|gb|EEB80417.1| FAD binding domain of DNA photolyase, putative [marine gamma
proteobacterium HTCC2148]
Length = 227
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 127/203 (62%)
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ + YKETRN++ G YS+ SPWLA+GS++ + E+ +E+ ANDST
Sbjct: 3 REGAVTSYKETRNQLDGLFYSSFLSPWLANGSLAVSKLAWELDQFEKLHGANDSTRHFYS 62
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WR++F ++ +SLF G + + D + F W G T YPL++A M +L
Sbjct: 63 ELLWREFFYRREVEDSSSLFRAKGTARERKLVTFDPRGFARWCAGATDYPLVNALMHQLV 122
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
+G+MSNRGRQIA S LV +M +DWR GA +FE LLDYD SNYGNW Y AGVG DPR
Sbjct: 123 ESGWMSNRGRQIAASCLVNEMNVDWRFGAAFFEQHLLDYDAASNYGNWQYIAGVGADPRG 182
Query: 496 DRYFSIPKQAQNYDREGEYVAYW 518
R+F + KQ + +D EGE+ W
Sbjct: 183 GRHFDLVKQTRQFDPEGEFTQRW 205
>gi|425464194|ref|ZP_18843516.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
gi|389833855|emb|CCI21283.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
Length = 474
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/457 (29%), Positives = 219/457 (47%), Gaps = 38/457 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA + S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILERD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G LLI G P + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK--SIEAKC--- 256
QQV+ + Q T +++ W ++ + S VYT F K S AK
Sbjct: 111 QQVIAALQ-----TKGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPK 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
T+ + + G + + ++P +E L + GE AA R+ E+
Sbjct: 166 TLENLQGLEENEGE--KLTETINLPTLENLGF---TWQNPLPLAPGEKAAHSRLEEFC-- 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWV 373
+ ++ Y+E RN D +++ S L G+I R I+ E+ + A DS
Sbjct: 219 QGVINNYQEDRN-FPAFDGTSRLSAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITW 277
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL WR++++ Y +G RK + W +++ F++W G TGYP++DA M
Sbjct: 278 QQELAWREFYQHCL--YFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAM 335
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G
Sbjct: 336 RQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGM 395
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 396 DPKPLRIFNPASQTQKFDPEGEYIRQWLPELASVDTE 432
>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 475
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/455 (28%), Positives = 217/455 (47%), Gaps = 37/455 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A S+ V+ V+C+DP + R +++
Sbjct: 4 LILFWHRRDLRISDNIGLAAACQKSQKVIGVFCLDPDILERD------DIAPARVTYMMG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L++ G LLI H P + IP+LA + A AV ++ +R V+ L
Sbjct: 58 CLQELQQRYAEAGSQLLILHQNPSQGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDAL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ ++ +S W ++ +I + + VYT F K+ + +
Sbjct: 118 EEKGIAVES------------FWDQLLHAPGEIRTNSGNPYKVYTPFWKNWKDQAKAAPA 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKV-----SKGMRFVGGESAALGRVNEYFWK 316
+ + G + D V + +EL + K + GE AA R+ E+
Sbjct: 166 ESLKNGEGLTETEQD--VVKKVGVMELPTAKELGFTWDNSLMLEPGEKAAKQRLEEFC-- 221
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS-YERERV--ANDSTYWV 373
+ Y+ RN + D +++ S L G+I R +++ ++ ER R D
Sbjct: 222 DRAIDDYQHQRN-LPAIDGTSRLSAALKFGAIGIRTVWQATQTAIERSRSDETRDGIQTW 280
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDAN 430
EL WR++++ +L + L GP + ++ W +Q LF++W +G TGYP++DA
Sbjct: 281 QQELAWREFYQH-ALYFFPEL--ASGPYRDTFENFPWDNNQTLFQAWCEGRTGYPIVDAA 337
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFL +D+ I+W+ G +F L D D +N G W + A G
Sbjct: 338 MRQLNQTGWMHNRCRMIVASFLTKDLIINWQWGETYFMQKLYDGDLAANNGGWQWSASSG 397
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
DP+ R F+ QAQ YD +GEY+ WLP+L +L
Sbjct: 398 MDPKPLRIFNPASQAQKYDPDGEYIRQWLPELSSL 432
>gi|388457015|ref|ZP_10139310.1| deoxyribodipyrimidine photolyase [Fluoribacter dumoffii Tex-KL]
Length = 469
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 141/497 (28%), Positives = 232/497 (46%), Gaps = 46/497 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
VA+VWFR DLR+ DN A ++A + V+P+Y D ++S +G + +L
Sbjct: 3 VALVWFRYDLRLNDNPAFIEACSHHQFVIPLYIYDGKNS---------VSGEAQDWWLHH 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L ++L GLNL++R G P EII L K +VY + C E + R K +
Sbjct: 54 SLTSLSESLAQLGLNLILRKGDPFEIISDLVKKLSVSSVYWNR--CYEPAAISR--DKKI 109
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ +L +S+N G+ ++ I + V+T + K + ++
Sbjct: 110 KAALLERGIEVQSSN--------GSLLHEPWTIKNKNGDYFKVFTPYWKHCKQHLNIQPS 161
Query: 262 IRI---PSSFGPPPSVV-DWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+ + P+ V+ DW +P I S + GE+ A +++E+ +
Sbjct: 162 MYLENRPAGIEVQSEVLKDWKLLPAINWAAQFSE------YWTPGEAGAQQKLHEFI--E 213
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DSTYWVLFE 376
L YK+ R+ + + +++ SP L G ISP I ++ + + S L E
Sbjct: 214 HHLNDYKKNRDFPIK-NATSRLSPHLHFGEISPWTILRAIELAKLNPNCDLSSADHFLSE 272
Query: 377 LMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
L WR++ + F L Y N + W D++L W++G TGYP+IDA M
Sbjct: 273 LGWREFSVYLLYHFPKLPYENFRSEFDA-----FPWHNDKELLARWQNGLTGYPIIDAGM 327
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TG+M NR R I SFL + + IDWR+GA+WF L+D D +N +W + AG G
Sbjct: 328 RELWATGYMHNRVRMIVASFLTKGLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGA 387
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNIN 550
D R F+ Q+Q +D +G Y+ +W+ +L L + + P S + + L
Sbjct: 388 DAAPYFRIFNPVLQSQKFDPDGHYIRHWVSELSHLQSQYIHAPWESADSERIYLTTHYPK 447
Query: 551 QNRNQNDSLTRTGRRNN 567
N +++ TR + N
Sbjct: 448 PIINHHEARTRALKYYN 464
>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
Length = 474
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/457 (29%), Positives = 219/457 (47%), Gaps = 38/457 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA + S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G LLI G P + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYHQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK--SIEAKC--- 256
QQV+ + Q T +++ W ++ + S VYT F K S AK
Sbjct: 111 QQVIAALQ-----TKGIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPK 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
T+ + + G + + ++P +E L + GE AA R+ E+
Sbjct: 166 TLENLQGLDENEGE--KLTETINLPTLENLGF---TWQNPLPLTPGEKAAHSRLEEFC-- 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWV 373
+ ++ Y+E RN D +++ S L G+I R I+ E+ + A DS
Sbjct: 219 QGVINNYQEDRN-FPAFDGTSRLSAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITW 277
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL WR++++ Y +G RK + W +++ F++W G TGYP++DA M
Sbjct: 278 QQELAWREFYQHCL--YFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAM 335
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G
Sbjct: 336 RQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGM 395
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 396 DPKPLRIFNPASQTQKFDPEGEYIRQWLPELASVDTE 432
>gi|336275375|ref|XP_003352440.1| cryptochrome [Sordaria macrospora k-hell]
Length = 530
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 147/266 (55%), Gaps = 41/266 (15%)
Query: 299 FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK 358
F GGE++A R+++ + K YK+TRN +LGP++STK S +LA G ++ R I+ +
Sbjct: 46 FRGGETSAHKRIDDLIMSGGM-KRYKDTRNGLLGPEFSTKLSAYLAQGCVTARQIHHALV 104
Query: 359 SYE-----RERVA-------NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG--PRKLE 404
+YE R + A N T V EL+WRDY R KYG+ LF + G + +
Sbjct: 105 AYEDGSDTRYQGADGFGEGDNQGTETVRIELLWRDYMRLCHQKYGDKLFRIEGFNGKHTD 164
Query: 405 YKWSQDQK------------------------LFESWRDGCTGYPLIDANMKELSMTGFM 440
Y+ +D+K + + G TG LIDA+ +EL TG+
Sbjct: 165 YE-GEDKKHGWKTANTSIALPGQDPTPEKVADILARFNAGTTGMGLIDASQRELLHTGYT 223
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR-EDRYF 499
SNR RQ SFL + M IDWR GAEW+E L+DYD SN+ NW Y AGVGNDPR R F
Sbjct: 224 SNRARQNVASFLAKHMEIDWRYGAEWYEMLLVDYDVSSNWANWQYVAGVGNDPRGAARIF 283
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+ KQA +YD++G YV W+P++ +
Sbjct: 284 NPVKQAFDYDKDGVYVRAWVPEVASF 309
>gi|425438323|ref|ZP_18818728.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440755927|ref|ZP_20935128.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
gi|389676549|emb|CCH94466.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440173149|gb|ELP52607.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
Length = 474
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 135/458 (29%), Positives = 219/458 (47%), Gaps = 40/458 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA + S ++ V+C+DP + R +L+
Sbjct: 4 LILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGD------DIAPARVAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L KN +G L+I G P + + +LA + A AV+ L++E R+
Sbjct: 58 CLEELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFN-------LDIEPYARQRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK--SIEAKC--- 256
QQV+ + Q T +++ W + + S VYT F K S AK
Sbjct: 111 QQVIAALQ-----TKGIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKARPK 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
T+ + + G + + ++P +E L + GE AA R+ E+
Sbjct: 166 TLENLQGLDENEGE--KLTETINLPTLENLGF---TWQNPLPLTPGEKAADSRLEEFC-- 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY----EEVKSYERERVANDSTYW 372
+ ++ Y+E RN D +++ S L G+I R I+ E +++ E N W
Sbjct: 219 QGVINNYQEDRN-FPAFDGTSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITW 277
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDAN 430
EL WR++++ Y +G RK + W +++ F++W G TGYP++DA
Sbjct: 278 QQ-ELAWREFYQHCL--YFFPELAVGAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAA 334
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G
Sbjct: 335 MRQLNETGWMHNRCRMIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSG 394
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ Q Q +D EGEY+ WLP+L ++ E
Sbjct: 395 MDPKPLRIFNPASQTQKFDPEGEYIRQWLPELASVDTE 432
>gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
Length = 471
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/457 (30%), Positives = 219/457 (47%), Gaps = 50/457 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+A+VWFR DLR+ DN A ++A E+V+P+Y D + S G +A +L
Sbjct: 3 IALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIYDDKCS---------VLGQAQAWWLHH 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L K+L +GL+L++R G P+EII L +G +VY + ++ ++ L
Sbjct: 54 SLIALGKSLNQQGLSLVLRKGSPQEIILELVSQYGVESVYWNRCYEPPVFARDKKIKLAL 113
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + +QS + G ++ I + V+T + K +C R
Sbjct: 114 GEREIKAQSFN------------GNLLHEPWAIKNKNGDFFKVFTPYWK----QC--RQI 155
Query: 262 IRIPSSF--GPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRVNEYFW 315
+ IPS P ++ S I++ +L P ++ RF GE A +++E+
Sbjct: 156 LNIPSPLMLTKRPRGIEITSDD-IDKWKL-LPAINWAARFSEYWTPGEKGAQKKLDEFII 213
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DSTYWVL 374
L YK R + + +++ SP L G ISP I ++ + E+ + S L
Sbjct: 214 HH--LSGYKRDR-DFPAKNATSRLSPHLHFGEISPWVILRALELTKLEQTCDLASVEHFL 270
Query: 375 FELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
EL WR++ + F L N + W D++L W+ G TGYPLIDA
Sbjct: 271 SELGWREFSVYLLYHFPKLDCENFRNEFDA-----FPWQNDEQLLTRWQKGMTGYPLIDA 325
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M+EL TG+M NR R I SFL +D+ IDWR+GA+WF L+D D +N +W + AG
Sbjct: 326 GMRELWATGYMHNRVRMIVASFLTKDLLIDWRLGAQWFLDTLVDADLANNSASWQWVAGC 385
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G D R F+ Q+Q +D +G Y+ W+P+L L
Sbjct: 386 GADAAPYFRIFNPVLQSQKFDPDGVYIRQWIPELAQL 422
>gi|380094328|emb|CCC07707.1| putative cryptochrome [Sordaria macrospora k-hell]
Length = 546
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 147/266 (55%), Gaps = 41/266 (15%)
Query: 299 FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK 358
F GGE++A R+++ + K YK+TRN +LGP++STK S +LA G ++ R I+ +
Sbjct: 62 FRGGETSAHKRIDDLIMSGGM-KRYKDTRNGLLGPEFSTKLSAYLAQGCVTARQIHHALV 120
Query: 359 SYE-----RERVA-------NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG--PRKLE 404
+YE R + A N T V EL+WRDY R KYG+ LF + G + +
Sbjct: 121 AYEDGSDTRYQGADGFGEGDNQGTETVRIELLWRDYMRLCHQKYGDKLFRIEGFNGKHTD 180
Query: 405 YKWSQDQK------------------------LFESWRDGCTGYPLIDANMKELSMTGFM 440
Y+ +D+K + + G TG LIDA+ +EL TG+
Sbjct: 181 YE-GEDKKHGWKTANTSIALPGQDPTPEKVADILARFNAGTTGMGLIDASQRELLHTGYT 239
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR-EDRYF 499
SNR RQ SFL + M IDWR GAEW+E L+DYD SN+ NW Y AGVGNDPR R F
Sbjct: 240 SNRARQNVASFLAKHMEIDWRYGAEWYEMLLVDYDVSSNWANWQYVAGVGNDPRGAARIF 299
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+ KQA +YD++G YV W+P++ +
Sbjct: 300 NPVKQAFDYDKDGVYVRAWVPEVASF 325
>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
Length = 481
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/463 (28%), Positives = 222/463 (47%), Gaps = 47/463 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L KA S V+ ++C D + R +L+
Sbjct: 4 LILFWHRKDLRISDNVGLAKARQESSKVVGIFCFDSNILERD------DIAPARIAYLLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L++ G NLL G+P IIP LA A AV+ L+VE ++
Sbjct: 58 CLQELQQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWN-------LDVEPYSQRRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC----- 256
+QV+ + + T + W +++ +I VYT F K+ E +
Sbjct: 111 EQVIQALKEQGIKT-----QTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSIT 165
Query: 257 ----TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
+ G + ++D +P +++L + + GE+AA R++
Sbjct: 166 NNLENLEGLTQTELEQAKTVKIID---LPTVKEL---GYRWDYPLILSPGETAAAERLD- 218
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERER---VAND 368
++ + Y+E RN + +++ SP L G I R +++ +K+ E R V
Sbjct: 219 -YFCDAAINEYQEQRN-FPAIEGTSQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRES 276
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYP 425
W EL WR++++ L + L GP + +++ W ++ LF++W DG TGYP
Sbjct: 277 IVTWQK-ELAWREFYQH-CLYFFPELAE--GPYREDFQDFPWDNNEVLFQAWCDGKTGYP 332
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D +N G W +
Sbjct: 333 IVDAAMRQLNETGWMHNRCRMIVASFLTKDLMINWQWGEKYFMQTLIDGDLAANNGGWQW 392
Query: 486 GAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
A G DP+ R F+ QAQ +D + +Y+ WLP+L++L E
Sbjct: 393 SASSGMDPKPLRIFNPASQAQKFDPDADYIRQWLPELRSLDTE 435
>gi|157865002|ref|XP_001681209.1| putative DNA photolyase [Leishmania major strain Friedlin]
gi|68124504|emb|CAJ02458.1| putative DNA photolyase [Leishmania major strain Friedlin]
Length = 934
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 157/575 (27%), Positives = 243/575 (42%), Gaps = 121/575 (21%)
Query: 72 SKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEM----------VLPVYCVDPR-HS 120
S +R+G V +V+ DLRV DN+ L A ++ V+ V +D R +
Sbjct: 221 SAGTQRHGCCVLVVFSSTDLRVHDNQLLAFASVCTKAAAEEVGGPVPVIGVCVLDYRTFA 280
Query: 121 QTTYHFGFPKTGALRAQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHA 179
Q + GF + RAQFL++ +A LR+ L + + LL+R G+PEE +P LA GA
Sbjct: 281 QPSAVGGFFRQSPQRAQFLLDTVAALRRKLEDTLHVPLLVRCGRPEEHVPRLAVELGATV 340
Query: 180 V-----YAQKE----------------TCSEELNVERLVRKNLQQ--------------- 203
V YA E EE++ E +V + Q
Sbjct: 341 VLMTTQYAPHERRVQALMVRRLRAGTWVSREEVSDEAVVTGAVGQGAPVTPLDKHCGSAA 400
Query: 204 -------VVLSSQSNDKSTNHPQ------------------LKLIWGTTMYHLDDIPFDH 238
V+ S HP + +W +T+ HLDD+P
Sbjct: 401 EEDDPLIAVVEHASCGVGGQHPYHCGSNLPSHCRSAAAPPVVHSVWQSTLVHLDDLPTPL 460
Query: 239 SSLPDVYTHFRKSI-------------------EAKCTVRGCIRIPSS---FGPPPSVVD 276
+ + + + + E T + +P+ +G V
Sbjct: 461 AVMKEGERWYHDDVTVSAIRPTEPYDKATALLAELPLTWQAAALLPTEDERYGRAGPSVL 520
Query: 277 WGSVPLIEQLELHSPKVSKGMRFV-------------GGESAALGRVNEYFWK---KDLL 320
G++P +E L +S ++ F GE AAL R+ ++ + LL
Sbjct: 521 RGALPRLEDLG-YSAAAARRTDFAFQEVIATQSSHPDAGEDAALARLQDWLAQGGVTSLL 579
Query: 321 KVYKETR-NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY----ERERVANDSTYWVLF 375
+ +E R N + + SP++A G++SPR YE ++ + +R+ L
Sbjct: 580 RYGRERRTNTKMYSQKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLL 639
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEY----KWSQDQKLFESWRDGCTGYPLIDANM 431
L RDY+ ++ L++G+ LF GP +W D+K+ + W DG TG P DA M
Sbjct: 640 RLSRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAM 699
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TGF++ GRQ L R G DWR+GAEW E C LDYDP YGN+ + G+
Sbjct: 700 RELVGTGFVAQEGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGNYAHSCGLML 759
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D + ++ A +D+ G YV WLPQL +P
Sbjct: 760 DDFGEPVRNVYYLAHQHDQTGIYVKKWLPQLSKVP 794
>gi|430003702|emb|CCF19491.1| Deoxyribodipyrimidine photo-lyase [Rhizobium sp.]
Length = 476
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 140/479 (29%), Positives = 220/479 (45%), Gaps = 49/479 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLR+ DN AL A ++ V+ ++ + + G P GA +A +L L
Sbjct: 9 IVWFRRDLRLADNAALSAAVETGAPVIALFI-----REGSAGGGMP-FGAAQAWWLHHSL 62
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
LR+ L +RG +LL G+ ++ +A+ GA+ +Y + E + +R + + L+
Sbjct: 63 LALRQALHDRGGDLLFFTGEAATVLVQVAQQTGANQIYLNR--SYERDDQDRDIARRLKA 120
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
++ + H + G PF V+T F K+++A R +
Sbjct: 121 EGIAVHAFHGQLLHDPSHIRTGGGK------PFR------VFTPFWKALQALGEPREPLA 168
Query: 264 IP------SSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
P SS P + DWG +P G + GE+ A R+ ++ +
Sbjct: 169 APDAMRGASSTPPSEQLEDWGLLPTKPDW-----AAGFGETWTPGEAGARFRLEDFV--E 221
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
L+ YK R+ D ++ SP LA G ++P + + A + + EL
Sbjct: 222 HGLREYKSVRD-FPARDLTSHLSPHLAHGEVTPAQAWHAASGLDNGDPAQITHF--RREL 278
Query: 378 MWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
WRD+ F L N G + WS D L+ +WR G TGYP++DA M+
Sbjct: 279 AWRDFNYSLLIEFPRLATDNWNTAFDG-----FAWSFDGALYRAWRKGLTGYPIVDAGMR 333
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L G+M NR R I SFL++D+ IDWR G EWF LLD DP +N +W + AG G D
Sbjct: 334 QLWREGYMHNRVRMITASFLIKDLTIDWRKGEEWFRETLLDADPANNAASWQWVAGSGAD 393
Query: 493 PRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE--RRNFPGGSYIEQIVSLKHGN 548
R F+ Q + +D +G+YV ++P+L L K+ R F +I Q ++ G
Sbjct: 394 ASPFFRIFNPTLQGEKFDPDGDYVRRYVPELSHLDKKYIHRPFEAPDHILQKAGIRLGE 452
>gi|443328462|ref|ZP_21057059.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
gi|442791916|gb|ELS01406.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
Length = 474
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 140/457 (30%), Positives = 214/457 (46%), Gaps = 35/457 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A + + V+ V+C+D R T R ++++
Sbjct: 4 LILFWHRRDLRLTDNLGLAAAKEQTVKVVGVFCLD-RDILTR-----DDIAPARVKYMMG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L ++ G LLI G P ++IP LA + A AVY L+VE RK
Sbjct: 58 CLQELSQSYGQIGSQLLITQGTPSQVIPQLASTLSAKAVYW-------NLDVEPYARKRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRK--SIEAKCTV 258
++V ++ Q D + + W + H S P VYT F + S++ K T+
Sbjct: 111 REVTIALQDKDITVQN-----FWDQLL-HPPGAVLTQSEQPYKVYTPFWRNWSLQDKPTI 164
Query: 259 RGCIR-IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
I+ + + VD V + E + GE+AA R+ E+
Sbjct: 165 SPQIKNLQGLTATELATVDQIYVSELPTAEDLGYSWETPLLLAPGETAAQARLEEF--SH 222
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERERVANDSTYWVLF- 375
+ Y E RN S S L G IS R I++ V++ E R + +
Sbjct: 223 SAIYQYDEQRNFPFNQGTSL-LSAALKFGVISLRAIWQTTVEALENCRSEEARVNVITWQ 281
Query: 376 -ELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDANM 431
EL WR++++ L + L GP + +K W + + F++W G TGYP++DA M
Sbjct: 282 KELAWREFYQH-CLYFFPELEQ--GPYRPAFKNFPWDNNPEHFQAWCQGKTGYPIVDAAM 338
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L TG+M NR R I SFL +D+ IDWR G ++F L D D SN G W + A G
Sbjct: 339 RQLQSTGWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQTLFDGDLASNNGGWQWSASSGM 398
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ QAQ +D E EY+ WLP++ ++ E
Sbjct: 399 DPKPLRIFNPASQAQKFDSEAEYIRQWLPEISSIDTE 435
>gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
Length = 440
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 202/447 (45%), Gaps = 50/447 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+V F DLRV D+ AL A + + V+P+Y +DP K R +FL +
Sbjct: 5 TAVVLFTRDLRVHDHPALAAACSAFDRVVPLYVLDP---------ALQKLSPNRTRFLHQ 55
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LADLR+ L RG +L+IR G P LA+ GA V + ER +R
Sbjct: 56 SLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADVSRYAHRRERRLRAEC 115
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYH---LDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ + L+L G T+ L DH + Y + + + +
Sbjct: 116 DRHRMF------------LRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQGVRWRDEL 163
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
R+ P VD G +P PK VGGE+ A R+ +
Sbjct: 164 AAPKRVRL-----PDGVDPGRLP-------DPPKGDSPDAAVGGETVARRRLTAWL---P 208
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L Y + ++M G D +++ SP+L G +SP + A D + +L
Sbjct: 209 TLDRYDDIHDDMAG-DETSRLSPYLRFGCVSPLAVANR---------AGDRDGPFVRQLC 258
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRD++ + + + L + R W D F++W +G TG P++DA M++L G
Sbjct: 259 WRDFYHQVVAGFPD-LSTVAYRRGAREDWRDDPHAFDAWAEGRTGMPIVDAGMRQLRAEG 317
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+M NR R I +L + +G+DWR G E F LLD D +N GNW + AG GND R R
Sbjct: 318 WMHNRARLITAGYLTKHLGLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPYRG 377
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKAL 525
F+ +QA+ YD +G YV W+P+L ++
Sbjct: 378 FNPVRQAERYDPDGAYVRRWVPELASV 404
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/457 (29%), Positives = 226/457 (49%), Gaps = 34/457 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ I W R DLRV DN L +A+ S ++ ++C+D + R +++
Sbjct: 4 IIIFWHRRDLRVSDNIGLSQAYQKSSKLVGLFCLD------SNLLNRDDIAPARVNYMLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+K+ G LLI G+P +IIP +A + V+ + ++ V++ L
Sbjct: 58 CLQHLQKSYQKLGSQLLIFQGEPTKIIPKVADALNVDCVFWNNDVEPYSKERDKQVKEAL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI--EAKCTVR 259
++ + S+ T QL G + ++ P+ VYT F +S E K +
Sbjct: 118 EEKSIQSK-----TYWDQLLHAPGEILTKSNNDPYK------VYTPFWRSWVKEEKADIV 166
Query: 260 GCIRIPSSFGPPP--SVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
I S +V D G + L +L + GE+AA ++N ++
Sbjct: 167 ESIEKLESLSDEEINTVKDLGLIDLPTAKDLGY-SWDAPLLLEPGETAAKEQLN--YFSD 223
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERERV--ANDSTYWVL 374
+ + Y+E RN + D ++K SP G I R +++ V++YE R A ++
Sbjct: 224 NAIYSYQEQRN-LPAIDATSKLSPAFKFGIIGIREVWQATVEAYENTRSDEARENIQTWQ 282
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDANM 431
E+ WR++++ L + L GP + E+K W +++ F++W +G TGYP++DA M
Sbjct: 283 QEIAWREFYQH-CLYFFPELAE--GPYRDEFKEFPWDNNEQHFQAWCEGKTGYPIVDAAM 339
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D +N G W + A G
Sbjct: 340 RQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGM 399
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ QAQ YD +GEY+ W+P++ +L E
Sbjct: 400 DPKPLRIFNPASQAQKYDPDGEYIRLWVPEISSLDTE 436
>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
Length = 484
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 218/462 (47%), Gaps = 51/462 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
AIVWFR DLR+ D+ AL A + + ++PVY V+ + G R
Sbjct: 2 TAIVWFRRDLRLHDHAALHAAMLTGDPIIPVYIVEDSLCLSA------AVGDKRLHAHFS 55
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+A L L+ G LLIR G+P++++ LA+ GA ++ ++ + + LV + L
Sbjct: 56 AIAALDDALVQLGGRLLIRRGEPQQVLCQLAQETGAEKLFFNRDYTPDARKRDELVSEVL 115
Query: 202 -QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ V D + P + T Y V+T +R+ + R
Sbjct: 116 SRHGVFVHACKDLVLHEPGEIMTKQRTPY-------------AVFTPYRRVWQTLPKDR- 161
Query: 261 CIRIPSSFGPPPSVVDW-----------GSVPLIEQLELHSPKVSKGMRFVGGESAALGR 309
P P +W VP +E + P ++ GE AA R
Sbjct: 162 ---------PFPQPTEWILFDRLKELPSEPVPTVEAFGRNRPMGTEWEMEQFGERAARKR 212
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK----SYERERV 365
+ + F +D+ YKE R+ M G + +++ S L +G++S R +Y V+ S E+V
Sbjct: 213 LQQ-FLDRDIY-TYKEKRD-MPGVNATSRLSFALNAGTLSIRTVYHRVQEVLASARGEQV 269
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYP 425
+ + L EL+WR++++ + + ++ H P+ E W + LF W G TGYP
Sbjct: 270 TSIEAF--LTELIWREFYQQVLYFHPHTTNHAYLPQFEEVAWENKKDLFVRWCQGETGYP 327
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA MK+L+ TG+M NR R I SFL +D+ +DWR G +F L+D+D +N G W +
Sbjct: 328 IVDAAMKQLNETGWMHNRLRMITASFLTKDLLVDWRWGMAYFAQQLIDFDEAANIGGWQW 387
Query: 486 GAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
A G D + R F+ Q + +DR+G +V +LP L+ +P
Sbjct: 388 SASTGTDAQPYFRIFNPVTQGEKFDRDGVFVKKYLPVLREVP 429
>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354553774|ref|ZP_08973080.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353554491|gb|EHC23881.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
Length = 476
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 135/471 (28%), Positives = 228/471 (48%), Gaps = 62/471 (13%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ I W R DLR+ DN L KA+ S ++ ++C+DP Q R +++
Sbjct: 4 IIIFWHRRDLRLSDNIGLSKAYQKSSKLVGLFCLDPNILQRD------DIAPARVNYMLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L+++ G LLI G+P +IIP +AKS + V + ++ V++ L
Sbjct: 58 CLRNLQESYQKLGGQLLIFQGQPTKIIPEVAKSLKVNCVIWNNDVEPYSKERDKQVKEAL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI--EAKCTVR 259
Q+ ++S+ T QL G + ++ P+ VYT F +S E K +
Sbjct: 118 QEKGITSE-----TYWDQLLHAPGEILTKSNNDPYK------VYTPFWRSWVKEDKANIA 166
Query: 260 GCIRIPSSFGPP-------------PSVVDWG---SVPLIEQLELHSPKVSKGMRFVGGE 303
I S P+ D G +PL+ +L GE
Sbjct: 167 ESIEKLDSLSDEEINTVKNIGLIDLPTAKDLGYGWDIPLLLEL---------------GE 211
Query: 304 SAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYER 362
+AA ++ +++ + Y+E RN D ++K SP G I R +++ +++YE
Sbjct: 212 TAAKEQL--HYFCNSTIYSYQEQRN-FPAIDGTSKLSPAFKFGVIGIREVWQTTIEAYEN 268
Query: 363 ERV--ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESW 417
R A ++ E+ WR++++ L + L GP + E++ W ++ F++W
Sbjct: 269 TRSDEARENIQTWQQEIAWREFYQH-CLYFFPELAE--GPYREEFQDFPWDNNEDHFQAW 325
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
+G TGYP++DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D
Sbjct: 326 CEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLMINWQWGEKYFMQKLIDGDLS 385
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
+N G W + A G DP+ R F+ QAQ YD +GEY+ W+P++ +L E
Sbjct: 386 ANNGGWQWSASSGMDPKPLRIFNPASQAQKYDPDGEYIRLWVPEISSLDTE 436
>gi|384084820|ref|ZP_09995995.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 484
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 214/455 (47%), Gaps = 41/455 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSE--MVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
+ IVW R DLR+ D+ AL W++S+ +V+P+Y +D + G +
Sbjct: 3 ITIVWLRRDLRLADHPAL---WEASQEGVVIPLYILDADE----------QAGTAELWWR 49
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
L L+++L GL L++R GKP +I+ + A AV+ + + + ++
Sbjct: 50 HHSLQQLQESLARYGLPLILRRGKPLQILQEIIAETSARAVFWNRRYDPAGIAQDTAIKA 109
Query: 200 NL--QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
L Q + + S + D ++H D+ P+ V+T F KS+ A+ +
Sbjct: 110 ELRSQGIAVRSFTGDCLVE---------PWLHHHDEKPYK------VFTPFWKSLLARFS 154
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRVNEY 313
+ + P P + + + L K + RF GE+ A R+ ++
Sbjct: 155 IVPALPEPDFSALPHQLTQDLVTETLAEWHLLPQKPNWAKRFSEFWAPGETGAKNRLQQF 214
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA-NDSTYW 372
+ L Y E RN + ++ SP L+ G ISPR I++E + + R+ D
Sbjct: 215 L--DESLVNYSEGRN-FPAQNSVSRLSPHLSHGEISPRQIWQETRFHLRQHPELTDEGEH 271
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL WR++ + + P ++ W +D L E W+ G TGYP++DA M+
Sbjct: 272 FLRELGWREFSWHLLFHFPQLPDTPLRPEFADFPWQKDTLLLERWQSGQTGYPIVDAGMR 331
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL +G+M NR R I SFL++D+ + W+ G WF L+D D +N +W + AG G D
Sbjct: 332 ELWQSGWMHNRVRMICASFLIKDLLVSWQDGEAWFWDTLVDADLANNSASWQWVAGSGAD 391
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D EG+Y+ W+P+L ALP
Sbjct: 392 AAPYFRIFNPVLQGEKFDPEGKYLRRWIPELSALP 426
>gi|154332778|ref|XP_001562651.1| putative DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134059654|emb|CAM41774.1| putative DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 959
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 156/575 (27%), Positives = 241/575 (41%), Gaps = 121/575 (21%)
Query: 72 SKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEM----------VLPVYCVDPR-HS 120
S + + + + +V+ DLRV DN L A + V+ V +D R +
Sbjct: 246 SAGPQPHSRCILVVFSSTDLRVHDNHLLAFASGCARAAAIKTGGPVSVIGVCVLDYRTFA 305
Query: 121 QTTYHFGFPKTGALRAQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHA 179
Q + GF + RAQFL++ +A LR L + LL+R G+PEE +P LA GA
Sbjct: 306 QPSVVGGFFRQSPQRAQFLLDTVAALRVKLEGTLHVPLLVRCGRPEEHVPRLAVELGAMH 365
Query: 180 V-----YAQKE----------------TCSEELNVERLVRKNLQQVVLSS---------- 208
V YA E EE+ E +V + QV ++
Sbjct: 366 VLMTTQYAPHERRVQELMVRRLRAGTWVSREEVTDEAVVAGAVGQVASAALDVSCGFAAD 425
Query: 209 ------------------------------QSNDKSTNHPQLKLIWGTTMYHLDDIPFDH 238
N + P++ +W +T+ HLDD+P
Sbjct: 426 EDDPLIAVVEHASSGAGGQQHPYYRGSSAPSRNRTAAALPEVHCLWQSTLVHLDDLPTPL 485
Query: 239 SSLPDVYTHFRKSI-------------------EAKCTVRGCIRIPSS---FGPPPSVVD 276
+++ + + + E T + +P+ +G S V
Sbjct: 486 AAMKEGERWYHDDVTVSLIRPTEPYNKATALLAELPLTWQTAALLPTEEERYGRVGSSVL 545
Query: 277 WGSVPLIEQLELHSPKVSKGMRFV-------------GGESAALGRVNEYFWK---KDLL 320
G++P +E L +S +G F GE AAL R+ ++ + LL
Sbjct: 546 RGALPRLEDLG-YSVSAVRGTDFAFQEVIATQSSHPDAGEDAALVRLQDWLAQGGVTSLL 604
Query: 321 KVYKETR-NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY----ERERVANDSTYWVLF 375
+ +E R N + + SP++A G++SPR YE ++ + +R+ L
Sbjct: 605 RYGRERRTNTKMYSQKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLL 664
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYK----WSQDQKLFESWRDGCTGYPLIDANM 431
L RDY+ ++ L++G+ LF GP W D+K+ + W +G TG P DA M
Sbjct: 665 RLSRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPDWRHDRKVVQRWCNGLTGIPFADAAM 724
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TGF+++ GRQ L R G DWR+GAEW E C LDYDP YGN+ Y G+
Sbjct: 725 RELVGTGFVAHEGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGNYAYSCGLIL 784
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D + S+ A +D+ G YV WLPQL +P
Sbjct: 785 DDFGEPVRSVYYLAHQHDQTGIYVKKWLPQLSKVP 819
>gi|414173991|ref|ZP_11428618.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
gi|410890625|gb|EKS38424.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
Length = 484
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 139/458 (30%), Positives = 217/458 (47%), Gaps = 43/458 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR+DLR+ D+ AL A S ++ +Y +D + + G P A R +L + L
Sbjct: 10 IVWFRDDLRLSDHPALHDAAQSGAPLVCLYVLD---EEGSPQHGRPIGSASR-WWLAQSL 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L+ +L RG +L +R G+P +I LA+ A AV+ + E ER V L +
Sbjct: 66 RSLQGSLTARGQSLTLRRGRPARVIADLAQEIRASAVHWNESDIPGEAATEREVTTALDR 125
Query: 204 VVLSSQS--NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ ++S+S +D +L+ G + V+T F K + +
Sbjct: 126 IGVASRSFPSDLLVRPEKLRNKEGRGLR--------------VFTPFWKRVLSLGDPPQP 171
Query: 262 IRIPSSF--GPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKK 317
+ P + GP + D S LE P + G+R + GE+AA R+ ++
Sbjct: 172 LPAPKALTAGPKIATDDLASW----NLEPTRPDWASGLRETWTPGEAAAQKRLKDFL--D 225
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA-NDSTYWVLFE 376
+ + Y R+ D +++ SP L G ISPR ++ + A + S L E
Sbjct: 226 NDIASYASLRDRP-DRDATSRLSPHLRFGEISPRQVWHSASFAAAGKPAISSSVAKFLSE 284
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLE-----YKWSQDQKLFESWRDGCTGYPLIDANM 431
L WR++ R + + R L+ + W D K +W+ G TGYP++DA M
Sbjct: 285 LGWREFSRHLLFDHPQL-----AERNLQSSFDAFPWHSDPKALRAWQRGQTGYPIVDAGM 339
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TG M NR R + SFLV+ + IDWR G +WF L+D DP SN +W + AG G
Sbjct: 340 RELWHTGIMHNRVRMVVASFLVKHLLIDWRDGEKWFWDTLVDADPGSNPASWQWVAGSGA 399
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
D R F+ Q + +D +G YV+ W+P+L LP +
Sbjct: 400 DAAPYFRVFNPILQGEKFDPDGAYVSKWVPELARLPAK 437
>gi|427429184|ref|ZP_18919220.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
gi|425880864|gb|EKV29558.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
Length = 481
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 212/453 (46%), Gaps = 39/453 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV FR+DLR+ D+ AL A + V+P+Y VD H P GA+R +L L
Sbjct: 11 IVLFRDDLRLADHRALSAAVGTGAPVIPLYVVDTAHGLGAGETARPLGGAVR-WWLHYSL 69
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L + L G L++R G+P E++P +A GA V + R +
Sbjct: 70 ESLSEGLRALGSRLILRAGRPHEVVPQVAAETGAARVLLNETVVPTHRESARRM-----A 124
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
L Q + T P L+W + ++ VYT F K++ + +
Sbjct: 125 AALEDQGVEAVTLRPD-ALVWPS------ELKTGTGGHYKVYTPFWKAL------KQAVG 171
Query: 264 IPSSFGPP---PSVVDW-GSVPLIE-QLELHSPKVSKGMR--FVGGESAALGRVNEYFWK 316
P + PP P+ W S PL E +L P + G+R + GE A ++ +
Sbjct: 172 DPETLPPPERLPAPDHWPDSTPLAEFRLTPAMPDWAGGLRESWTPGEDGAWACLHTFI-- 229
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
L Y+ RN + +++ SP L G IS R ++ V+S + D+ L E
Sbjct: 230 DGALARYRTGRN-LPAEVGTSRLSPHLRFGEISARQVWNAVRSMAEPNASTDA---YLSE 285
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDANMKE 433
+ WR++ R+ + N H P + E++ W +D +WR G TGYP++DA M+E
Sbjct: 286 IGWREFNRY--QLFHNPDLHRT-PLRPEFRLFPWREDDADIRAWRKGLTGYPIVDAGMRE 342
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L TG+M NR R I SFLV+D+ W++G WF L+D D SN GNW + AG G D
Sbjct: 343 LWETGWMHNRVRMIVGSFLVKDLLAPWQVGEAWFWDTLVDADWGSNPGNWQWVAGCGADA 402
Query: 494 RE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R F+ Q + +D G+YV W+P+L+ +
Sbjct: 403 APFFRVFNPVLQGEKFDPRGDYVRRWVPELREM 435
>gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
Length = 440
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 202/447 (45%), Gaps = 50/447 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+V F DLRV D+ AL A + + V+P+Y +DP K R +FL +
Sbjct: 5 TAVVLFTRDLRVHDHPALAAACSAFDRVVPLYVLDP---------ALQKLSPNRTRFLHQ 55
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LADLR+ L RG +L+IR G P LA+ GA V + ER +R
Sbjct: 56 SLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADVSRYAHRRERRLRAEC 115
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYH---LDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ + L+L G T+ L DH + Y + + + +
Sbjct: 116 DRHRMF------------LRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQGVRWRDEL 163
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
R+ P VD G +P PK VGGE+ A R+ +
Sbjct: 164 AAPKRVRL-----PDGVDPGRLP-------DPPKGDSPDAAVGGEAVARRRLTAWL---P 208
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L Y + ++M G D +++ SP+L G +SP + ++ V +L
Sbjct: 209 TLDRYDDIHDDMAG-DETSRLSPYLRFGCVSPLAVATRAGGWDGPFVR---------QLC 258
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRD++ + + + L + R W D F++W +G TG P++DA M++L G
Sbjct: 259 WRDFYHQVVAGFPD-LSTVAYRRGAREDWRDDPHAFDAWAEGRTGMPIVDAGMRQLRAEG 317
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+M NR R I +L + +G+DWR G E F LLD D +N GNW + AG GND R R
Sbjct: 318 WMHNRARLITAGYLTKHLGLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPYRG 377
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKAL 525
F+ +QA+ YD +G YV W+P+L ++
Sbjct: 378 FNPVRQAERYDPDGAYVRRWVPELASV 404
>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
Length = 471
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 217/467 (46%), Gaps = 54/467 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+A+VWFR DLR+ DN A ++A E ++P+Y D + S G +A +L
Sbjct: 3 IALVWFRQDLRLTDNPAFIEACSHHETIIPLYIYDDKCS---------VLGQAQAWWLHH 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L K+L +GL+L++R G P EII L +G +VY + C E + R K +
Sbjct: 54 SLIALGKSLNQQGLSLVLRKGSPLEIILELVTQYGLESVYWNR--CYEPQVIAR--DKKI 109
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + S N G ++ I + V+T + K +C R
Sbjct: 110 KLALGEKGIKVHSFN--------GNLLHEPWTIKNKNGDFFKVFTPYWK----QC--RQI 155
Query: 262 IRIPSSF-------GPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRV 310
+ IPS F G + D G L+ P ++ RF GE A ++
Sbjct: 156 LNIPSPFMLTKRPRGIEITSDDLGKWKLL-------PAINWAARFSEYWTPGEEGAQKKL 208
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DS 369
NE+ L YK R+ + +++ SP L G ISP I ++ + E+ + S
Sbjct: 209 NEFV--VHHLSGYKRERD-FPAKNATSRLSPHLHFGEISPWVILRALELAKLEQTCDLAS 265
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
L EL WR++ + L Y RK + W D++L W+ G TGYP+I
Sbjct: 266 LEHFLSELGWREFS--VYLLYHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPII 323
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M+EL TG+M NR R I SFL +D+ IDWR GA+WF L+D D +N +W + A
Sbjct: 324 DAGMRELWATGYMHNRVRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVA 383
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G G D R F+ Q+Q +D +G Y+ W+P+L L + + P
Sbjct: 384 GCGADAAPYFRIFNPVLQSQKFDPDGVYIRQWIPELAQLNSQSIHQP 430
>gi|401416445|ref|XP_003872717.1| putative DNA photolyase [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322488942|emb|CBZ24191.1| putative DNA photolyase [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 933
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 162/575 (28%), Positives = 244/575 (42%), Gaps = 121/575 (21%)
Query: 72 SKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEM----------VLPVYCVDPR-HS 120
S +R+G V +V+ DLRV DN+ L A + V+ V +D R +
Sbjct: 220 SAGTQRHGCCVLVVFSTTDLRVHDNQLLAFASVCARAAAAEAGGPVPVIGVCVLDYRTFA 279
Query: 121 QTTYHFGFPKTGALRAQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHA 179
Q + GF + RAQFL++ +A LR+ L + + LL+R G+PEE +P LA A
Sbjct: 280 QPSTVGGFFRQSPQRAQFLLDTVAALRRKLEDTLHVPLLVRCGRPEEHVPRLAVELRAMD 339
Query: 180 V-----YAQKE----------------TCSEELNVERLVRKNLQQ--------------- 203
V YA E EE+ E +V + Q
Sbjct: 340 VLMTTQYAPHERRVQALMVRRLQAGTWVSREEVADETVVASEIGQGASVTPLDAHCGSAA 399
Query: 204 -------VVLSSQSNDKSTNHPQ------------------LKLIWGTTMYHLDDIPFDH 238
V+ S HP + +W +T+ HLDD+P
Sbjct: 400 EEDDPLIAVVEHASCGVGGQHPYHRGSNLPSHCRAAAALPVVHSVWQSTLVHLDDLPTPL 459
Query: 239 SSLP--------DVYTHFRKSIE---------AKC--TVRGCIRIPSS---FGPPPSVVD 276
+++ DV + E AK T + +P+ +G V
Sbjct: 460 AAMKEGERWYHDDVTVSTIRPTEPYDKATALLAKLPRTWQAAALLPTENERYGRAGPSVL 519
Query: 277 WGSVPLIEQLELHSPKVSKGMRFV-------------GGESAALGRVNEYFWK---KDLL 320
G++P +E L +S ++G F GE AAL R+ ++ + LL
Sbjct: 520 RGALPRLEDLG-YSAAAARGTDFAFQEVIATQSSHPDAGEDAALVRLQDWLAQGGVTSLL 578
Query: 321 KVYKETR-NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY----ERERVANDSTYWVLF 375
+ +E R N + + SP++A G++SPR YE ++ + +R+ L
Sbjct: 579 RYGRERRTNTKMYSQKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLL 638
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEY----KWSQDQKLFESWRDGCTGYPLIDANM 431
L RDY+ ++ L++G+ LF GP +W D+K+ + W DG TG P DA M
Sbjct: 639 RLSRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAM 698
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TGF++ GRQ L R G DWR+GAEW E C LDYDP YGN+ Y G+
Sbjct: 699 RELVGTGFVAQEGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGNYAYSCGLML 758
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D + ++ A +D+ G YV WLPQL +P
Sbjct: 759 DDFGEPVRNVYYLAHQHDQTGIYVKKWLPQLSKVP 793
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 142/469 (30%), Positives = 207/469 (44%), Gaps = 63/469 (13%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSE-MVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
I WFR DLR+ DN AL A S+ V+P++ +D H P+TGA R F+I
Sbjct: 4 IHWFRRDLRLHDNPALHTASIRSDGRVIPLFILD----DAILHA--PRTGAARIAFMIAA 57
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVY-------------AQKETCSE 189
L DL NL RG L+IR G+ ++I ++ + GA V AQ E
Sbjct: 58 LRDLDANLRARGSRLVIRRGRTLDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALR 117
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
+LNVE +S + D P DD+ VYT +R
Sbjct: 118 DLNVE------------TSIAEDAVVFSP-------------DDVRTGDGRPYTVYTPYR 152
Query: 250 KSIEAKCTVRGCIRI----PSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESA 305
+ A R + P P P V +VP L + VS+ + GGE+
Sbjct: 153 RRWRALTEQRRAEVLRAIEPPLLRPAPEAVADQTVPDHADLGI---VVSQRIP-PGGETH 208
Query: 306 ALGRVNEY--FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY--- 360
R+ + + Y E R+ +L +++ SP+L G ++PR
Sbjct: 209 GAARLAAFVDLAAAHSIAGYAEGRD-LLAEPATSRLSPYLRFGCVAPRQALRAALRLLDI 267
Query: 361 --ERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWR 418
+ R W+ EL WRD++ I Y + + P+ W D LF++W+
Sbjct: 268 VGDDHRTVRSIETWI-GELAWRDFYYQILWHYPHVVRRSFKPQYDALAWENDPALFDAWK 326
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
+G TGYP+IDA M +L +M NR R I SFL +D+ IDWR G +F L+D D +
Sbjct: 327 EGRTGYPIIDAAMHQLRQEAWMHNRARMIVASFLTKDLLIDWRWGERYFMQQLVDGDHAA 386
Query: 479 NYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
N G W + AG G D + R F+ Q Q +D +G YV +LP+L +P
Sbjct: 387 NNGGWQWSAGTGTDAQPYFRIFNPVSQGQKFDPKGLYVRRYLPELAQVP 435
>gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15]
gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus
CB15]
gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
Length = 483
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 209/452 (46%), Gaps = 44/452 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLR+ DN AL A S V+P+Y +D +T G G +L + L
Sbjct: 18 IVWFRKDLRIADNPALRHAAQSGRPVIPLYILD----ETP---GIRPMGGASLWWLDKSL 70
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L +L G L++R G E++ L GA +V + + + ++ L+
Sbjct: 71 KSLAASLETLGTKLVLRKGVAAEVLDQLIAQSGARSVVWNRLYDKPSTDRDAAIKAALRD 130
Query: 204 VVLSSQS-NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT----- 257
+ QS N N P T+ + D P+ V+T + ++ T
Sbjct: 131 RGVDCQSFNAGLLNEPW-------TVKNGSDQPYK------VFTPYWRAAREHLTDVAVT 177
Query: 258 -VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR-FVGGESAALGRVNEYFW 315
G + P+ F S+ W L P SKG + GE+ A R++ +
Sbjct: 178 AAPGHLVAPARFPASESLASW-------NLHPTKPDWSKGFDLWTPGEAGAHARLDAFL- 229
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERER---VANDSTYW 372
K +K Y + R ++ G + ++K SP L G I PR ++ +S + +A +
Sbjct: 230 -KGPIKGYGDQR-DIPGVEATSKLSPHLHFGEIGPRQVWLATRSAADQGDIPLAEADKF- 286
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
L E+ WR++ I + + P + W +D+ E+W+ G TGYP++DA M+
Sbjct: 287 -LSEIGWREFNHSILYNWPHMPSANFKPEFDGFPWVKDEGALEAWKRGQTGYPIVDAGMR 345
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TGFM NR R I SFL++ + IDWR G WF LLD D +N GNW + AG G D
Sbjct: 346 ELWTTGFMHNRVRMIVASFLIKHLMIDWREGEAWFWDTLLDADLANNVGNWQWTAGSGAD 405
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLK 523
R F+ Q + +D +G+YV W+P+L+
Sbjct: 406 AAPYFRIFNPIAQGEKFDPKGDYVRRWVPELR 437
>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
Length = 479
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 139/483 (28%), Positives = 221/483 (45%), Gaps = 41/483 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AIVWFR+DLR+ D+ AL +A S ++ +Y +D H GA +L
Sbjct: 9 AIVWFRDDLRMADHPALHEAAASGWPLICLYILD--DVTPALH----PLGAAARWWLRGA 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LADLR+NL +G LL G E+++P LAK A +V+ E + +R+ L+
Sbjct: 63 LADLRRNLEKQGGTLLTLSGSAEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTLE 122
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + H Q WGT + D + V F K+++ V +
Sbjct: 123 E--------QECEVHAQ----WGTVLVDPDTVQTKQGGFYKVCGSFWKALQTHA-VPEPL 169
Query: 263 RIPS--SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
PS SF P+ V + + L +P + G R A G+ + + K+ +
Sbjct: 170 EAPSRLSFHAIPASVLSDARLNEDSLCPQAPDWAAGFRKTWEPGEAEGQEHLEDFLKNSV 229
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
Y R+ + + +++ SP+LASG++SPR ++ + ++ D L EL WR
Sbjct: 230 AGYPRGRDRV-AEEGTSRLSPYLASGAVSPRQVW---AALQKHGAHTDGPRIFLSELGWR 285
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
++ R+ F P+ W + ++W+ G TG P++DA M++L TG+M
Sbjct: 286 EFARYTLYHLPKLPFENLSPKFSGMHWRRSAADLKAWQRGQTGVPIVDAGMRQLWQTGWM 345
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYF 499
NR R I SFL + + IDW+ G WF L+D D +N NW + AG G + R F
Sbjct: 346 HNRARMIVGSFLTKHLLIDWKEGDAWFRDTLVDADFANNAMNWQWVAGTGIEATPFFRIF 405
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------------GGSYIEQIVSL 544
+ +QA+ +D G+Y+ W+P+L+ L + P G SY IV L
Sbjct: 406 NPTRQAEKFDPNGDYIRQWVPELRRLSGKALFEPWAAKDEELEKAGVRLGKSYPRPIVDL 465
Query: 545 KHG 547
K G
Sbjct: 466 KEG 468
>gi|405377862|ref|ZP_11031797.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF142]
gi|397325650|gb|EJJ29980.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF142]
Length = 484
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 132/456 (28%), Positives = 206/456 (45%), Gaps = 48/456 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLR+ DN AL A S V+P+Y +P+ T GA +A +L L
Sbjct: 11 IVWFRKDLRLDDNRALYAACASGRPVIPLYIREPQEDGTG------PLGAAQAWWLHHSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L L G L++ G + + + GA AV+ + + ++ ++ ++
Sbjct: 65 HALDAALKKHGGKLILASGHARHALADIIRRSGAEAVFWNRRYDPPGIAIDTRLKHEFEK 124
Query: 204 VVLSSQSNDKSTNH--PQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE------AK 255
+ ++S H +LK GT+ VYT F +++E A
Sbjct: 125 QAIEARSFGGQLLHEPTRLKTTSGTSYR--------------VYTPFWRALEEGGEPEAP 170
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
V R P F + W +PL P + + GE+AA +++ +
Sbjct: 171 VDVPERFRFPKQFPASEVLASWKLLPLKPNWAKSFPDM-----WTPGEAAAQEKLSAFV- 224
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+D L Y R+ G ++ SP LA G ISP I++ + R R+ +D
Sbjct: 225 -EDGLSGYSADRD-FPGKTATSLLSPHLALGEISPARIWDATEGLSR-RIPSDDIVRFRK 281
Query: 376 ELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
EL WR++ F F L N G + W +D+ F +W +G TGYP++DA
Sbjct: 282 ELAWREFSYHLLFHFPELARDNWNDSFDG-----FGWREDEDGFHAWCNGQTGYPIVDAG 336
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L G+M NR R I SFL++D+ +DWR G WF L+D DP SN +W + AG G
Sbjct: 337 MRQLWRHGWMHNRVRMITASFLIKDLLVDWRRGEAWFRDTLVDADPASNAASWQWVAGSG 396
Query: 491 NDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
D R F+ Q + +D +G Y+ ++P+L L
Sbjct: 397 ADASPFFRIFNPMLQGEKFDADGSYIRQFVPELGKL 432
>gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
Length = 481
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 133/463 (28%), Positives = 208/463 (44%), Gaps = 50/463 (10%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G IVWFR DLR+ DN AL A DS V+ +Y +D +T G GA +L
Sbjct: 13 GAVIVWFRKDLRIADNPALRHAADSGRPVVCLYILD----ETP---GVRPMGAASLWWLD 65
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ L L + L G L++R G +++ +L GA V + ++ + ++
Sbjct: 66 KSLKSLAQELEKLGNRLVLRKGVAADVLDALIAETGATGVVWNRLYDKASVDRDATIKAR 125
Query: 201 LQQVVLSSQS-NDKSTNHPQ------------LKLIWGTTMYHLDDIPFDHSSLPDVYTH 247
L++ + QS N N P W HLDD+ + + P V
Sbjct: 126 LKEAGVDCQSFNAGLLNEPWTVQNGSGQPYKVFTPYWRAARQHLDDVTVEPA--PKVLRC 183
Query: 248 FRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAAL 307
K++ ++ +++ P+ DW + +L +P GE+ A
Sbjct: 184 LDKAVRSEPL--------AAWDLHPTRPDWS-----KGFDLWTP----------GEAGAR 220
Query: 308 GRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK-SYERERVA 366
R++ + + Y E R+ P +++ SP L G I PR ++ + + E +
Sbjct: 221 ARLDAFL--SGPITGYGEKRDIPSAP-ATSRLSPHLHFGEIGPRQVWLAARNAAEAGDIP 277
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
L EL WR++ I + P + W++D FE+W G TGYP+
Sbjct: 278 TAEADKFLSELGWREFNHSILFHWPQLPARNFKPEFDGFPWAKDHAAFEAWTRGETGYPI 337
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M+EL TGFM NR R I SFL++ + IDWR G WF L+D D +N GNW +
Sbjct: 338 VDAGMRELWTTGFMHNRVRMIVASFLIKHLMIDWREGEAWFWDTLVDADLANNVGNWQWT 397
Query: 487 AGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
AG G D R F+ Q + +D G+YV W+P+LK +P +
Sbjct: 398 AGSGADAAPYFRIFNPISQGEKFDPRGDYVRRWVPELKTVPDD 440
>gi|348175729|ref|ZP_08882623.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora spinosa NRRL
18395]
Length = 453
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 138/454 (30%), Positives = 214/454 (47%), Gaps = 53/454 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
I F DLRV DN L A ++ V+P++ D Q P T R FL+
Sbjct: 3 TTICLFTRDLRVHDNPVLRHA-ARADRVVPLFVFDETLLQ------LPFTRPNRIAFLLG 55
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL DLR++L G L++RHG P + L GA V+ + + + E +R L
Sbjct: 56 CLRDLRRSLGEAGGGLVVRHGTPAIEVARLVDEVGATEVHVAADVSAYARSRENGLRLAL 115
Query: 202 QQVVLSSQSNDKS-TNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT-HFRKSIEAK---- 255
+ + ++ T HP ++ DH + V+T +FR+ +E
Sbjct: 116 AEHGCTLHVHEAVVTAHPPGRVTPAGK---------DHFA---VFTPYFRRWVETPPRRI 163
Query: 256 CTVRGCIRIPSSF--GPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
+R+P GP P+ D L SP++ +G GE+ A R
Sbjct: 164 AAAPEALRMPDGVRTGPMPAREDLCPGAL-------SPELPRG-----GETTA--RQQML 209
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
W + + Y E +++ G D +++ SP+L G +SP I E ER
Sbjct: 210 RWFEQGVADYDEGHDDLAG-DATSRLSPYLHFGCLSPVEIVARAGRSEPERA-------F 261
Query: 374 LFELMWRDYF-RFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
+ +L WRD+ + ++ + G S HL R +W D + F +WRDG TG P++DA M+
Sbjct: 262 VRQLAWRDFHHQMLAARPGCS--HLDY-RSRGDRWRDDPEAFRAWRDGRTGIPIVDAGMR 318
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+LS G+M NR R I SFL + + +DWR+GA+ F L+D D +N NW + AG G D
Sbjct: 319 QLSREGWMHNRARLITASFLTKTLYLDWRLGAQHFFDLLVDGDVANNDMNWQWVAGTGAD 378
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R +R + +QA+ YD G Y+ ++P+L +LP
Sbjct: 379 TRPNRVLNPMRQAERYDPSGNYIRRYVPELASLP 412
>gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 485
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 215/462 (46%), Gaps = 41/462 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPK-TGALRAQFLIE 141
AI+WFR DLR+ DN AL A +S P+ CV R + G P+ G +L +
Sbjct: 7 AILWFREDLRLTDNPALNAAVNSGR---PLICVYLRETGA----GAPREMGGASRWWLNK 59
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LA L +L G L +R G E+IIP+L + GA AV+ + E + ++K L
Sbjct: 60 SLASLGASLEAIGGKLTLRTGPAEKIIPALVEETGAAAVFWNRRYGLPERETDAAIKKTL 119
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + QS + G + D+ V+T F ++++A+
Sbjct: 120 KDNGVECQSFN------------GRLLMEPWDLKTGSGGWYKVFTPFWRALQAQYK---- 163
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLE---LH--SPKVSKGMR--FVGGESAALGRVNEYF 314
P +F P P + G+ E L+ LH P S G+ + GE A R++ +
Sbjct: 164 ---PPAFIPSPKKIA-GASAETENLKDWGLHPEKPDWSGGIAAAWEPGEVGAQKRLDAFL 219
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS-YERERVANDSTYWV 373
+ Y TRN +++ SP L G I P I+ V++ E ++ DS
Sbjct: 220 --DGPVSDYVGTRNLPGVSTGTSRLSPHLRFGEIGPAQIWRAVRARLEAQQADEDSARVF 277
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKL-EYKWSQDQKLFESWRDGCTGYPLIDANMK 432
L E+ WR+ F + L Y +L + W +D F +W G TGYP++DA M+
Sbjct: 278 LSEIAWRE-FSYTLLYYNPALATENYNSNFNQMAWRKDDSGFAAWSRGQTGYPIVDAGMR 336
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TG+M NR R I SFL + + + W+ G +WF L+D DP +N +W + AG G D
Sbjct: 337 ELWHTGWMHNRVRMIVASFLTKHLLLPWQQGEQWFWDTLVDADPAANPASWQWTAGSGAD 396
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q Q +D +G YV +W P+L LP + + P
Sbjct: 397 AAPYFRVFNPISQGQKFDEDGAYVRHWCPELAGLPDKYLHAP 438
>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 482
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 130/465 (27%), Positives = 218/465 (46%), Gaps = 49/465 (10%)
Query: 75 LKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
+ ++ I+WFR DLR+ DN+AL A S ++P+Y +P + T GA
Sbjct: 1 MAKDAAKPVILWFRKDLRLDDNQALTAAHRSGRPIIPLYIREPAAAGTG------PLGAA 54
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
+A +L L L ++L L++ G+ E++ + K A AV+ + ++++
Sbjct: 55 QAWWLHHSLEALNRSLQKLNGRLVLASGEALEVLCAFIKESAAEAVFWNRRYDPAGISID 114
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF----DHSSLP----DVYT 246
++ L++ + ++S H +L+ G + PF + P D
Sbjct: 115 ARIKHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGGEPEPPLDAPA 174
Query: 247 HFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAA 306
R + + K V G ++ P+ DW + ++L +P GE A
Sbjct: 175 KLRLASQPKSEVLGSWKLL------PTKPDWAG----DFVDLWTP----------GEEGA 214
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
R++ + +D L+ YKE R+ P ++ SP LA G ISP I++ + + A
Sbjct: 215 QQRLHVFV--EDALEGYKENRDYPARP-ATSMLSPHLALGEISPARIWDATRGLSQRVPA 271
Query: 367 NDSTYWVLFELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGC 421
D + E+ WR++ F F L N G ++W + FE+WR G
Sbjct: 272 ADIVH-FREEIAWREFSYHLLFHFPRLASANWNDRFDG-----FEWRNNSGDFEAWRRGM 325
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TGYP++DA M++L G+M NR R I SFL++D+ IDWR G WF L+D DP +N
Sbjct: 326 TGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADPANNAA 385
Query: 482 NWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+W + AG G D R F+ Q + +D +G+YV ++P+L+ L
Sbjct: 386 SWQWVAGSGADASPFFRIFNPVLQGEKFDPDGDYVRTYVPELREL 430
>gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130]
gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130]
Length = 480
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 136/454 (29%), Positives = 208/454 (45%), Gaps = 41/454 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+WFR DLR+ DN AL+ A +S + V+ V+ D G K G +L L
Sbjct: 8 IMWFRQDLRLDDNPALIAAAESGKPVVAVFVFDEASE------GIRKLGGAMRWWLHHSL 61
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L K+L G++L++R G E+I LAK GA V + E V+ ++ + +
Sbjct: 62 KSLTKDLGALGVDLILRRGPGAEVIFDLAKEVGAENVVWNRRYGDAEQTVDATIKGDFEG 121
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ K G M+ ++ + VYT F K C +
Sbjct: 122 ---------------EAKSYGGIIMHEPINVRTGTGNPYKVYTPFWKKF---CE----MG 159
Query: 264 IPSSFGPPPSVV-----DWGSVPLIE-QLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
+P P P + D S L E L P S G + GESAA R +
Sbjct: 160 LPRDAHPAPQEIAGFGGDVASDNLDEWDLLPTKPDWSDGWLKVWTPGESAAQTRARAFM- 218
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
D L VY R+ + G D +++ SP L G ISP +++ + + WV
Sbjct: 219 -SDDLDVYDSARD-LPGDDRTSRLSPHLRWGEISPYRLWQMAQDGRLSAGSKARETWVK- 275
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WR++ + ++ + + + W D + +W+ G TGYP++DA M++L
Sbjct: 276 ELVWREFSYHLLQEWPDLANENFNTKYDSFPWRSDDEQLRAWQKGQTGYPIVDAGMRQLW 335
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R I SFLV+ + +DWR G +WF L+D DP SN W + AG G D
Sbjct: 336 QTGWMHNRVRMIVGSFLVKHLLLDWRHGEDWFWDTLVDGDPASNSAQWQWVAGTGADAAP 395
Query: 496 -DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ QA+ +D++G Y+ W+P+L LP +
Sbjct: 396 FFRIFNPIMQAEKFDKDGVYIKKWVPELAKLPAK 429
>gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5]
gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisB5]
Length = 487
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 148/506 (29%), Positives = 224/506 (44%), Gaps = 84/506 (16%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR+DLR+ D+ AL +A S ++ +Y D +Q P GA R +L + L
Sbjct: 10 IVWFRDDLRLSDHPALHQAAASGGPLICIYVFDEDSAQLRSPQARPLGGASR-WWLAQSL 68
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVY----------AQKETCSEELNV 193
L +L RG L++R G II LA+ A AV+ A + +E L+V
Sbjct: 69 RALAASLEKRGARLILRRGPAAAIIAELARQVDASAVHWNEIEIAPHRAVADDLAEALSV 128
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ + +L+S + ++ L+ V+T F + +
Sbjct: 129 AGIDHHRHRGDLLASPAEVRTKEGRGLR----------------------VFTPFWRRVL 166
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQL-----ELHSPKVSKGMR--FVGGESAA 306
+ P P P + P +QL E P + G+R + GE AA
Sbjct: 167 G-------LGDPPKLLPAPKTLSAAQGPSGDQLDSWMLEPTEPDWAGGLRESWTPGEGAA 219
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPD--YSTKFSPWLASGSISPRYIYEEVK--SYER 362
+ + D L Y E R+ PD +++ SP L G ISPR ++ + + ER
Sbjct: 220 QDNLTAFL---DALPGYTEGRDR---PDCAATSRLSPHLRFGEISPRQVWYAARFAAAER 273
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE-----YKWSQDQKLFESW 417
+A D L EL WR++ R + + + R L+ + W D +W
Sbjct: 274 PAIAGDIDK-FLSELGWREFCRHLLHDHPDL-----AERNLQASFDAFPWITDAAALHAW 327
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
+ GCTGYP++DA M+EL TG M NR R + SFLV+ + IDWR G +WF L+D D
Sbjct: 328 QRGCTGYPIVDAGMRELWHTGVMHNRVRMVVASFLVKHLLIDWRCGEQWFWDTLVDADAG 387
Query: 478 SNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--- 533
SN NW + AG G D R F+ Q + +D G+YV W+P+L +LP + + P
Sbjct: 388 SNPANWQWVAGSGADAAPYFRVFNPILQGEKFDPAGDYVRRWVPELASLPAKFIHQPWTA 447
Query: 534 ------------GGSYIEQIVSLKHG 547
GG+Y E I+ + G
Sbjct: 448 TPFELAAAGVTLGGNYPEPIIDHRVG 473
>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
Length = 471
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 143/481 (29%), Positives = 226/481 (46%), Gaps = 64/481 (13%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+VW R DLR+ D+ A A SE VLPV+ D + P+ R F+ +
Sbjct: 7 TALVWLRRDLRLDDHAAFYHALKHSEAVLPVFVFD-----ASILAALPRDDR-RVDFIWQ 60
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK--ETCSEELNVERLVRK 199
A L+ L G +LLIRHG P+ IP LA GA AV+ + E + + E + ++
Sbjct: 61 SAAALKAELNQLGGDLLIRHGLPQHEIPRLAAELGAEAVFCNRDYEPAARARDAE-VAQR 119
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT-- 257
+Q V S D+ ++ D++ V+T ++ + K T
Sbjct: 120 LAEQGVAFRDSKDQ-------------VIFETDEVLTGAGKPFSVFTPYKNAWLKKLTPF 166
Query: 258 ------VRGCI-----RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAA 306
VR + R P S PS+ D G +P +L S V G G E+
Sbjct: 167 HLQAYPVRRYLDALMPREPQSM---PSLADIGFLPS----DLASLPVKAGA--AGAEALF 217
Query: 307 L---GRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE 363
GR+ Y ++D V G Y S L G++S R + +Y
Sbjct: 218 ADFAGRIERYKAQRDFPGVK--------GVSY---LSVHLRFGTLSIR----RLAAYAWH 262
Query: 364 RVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTG 423
+ W L EL+WRD+++ + ++ H P + D + F++WR+G TG
Sbjct: 263 DGGEGAMTW-LSELIWRDFYQQVLWHRPDAAKHAFKPEYDALPFPNDPEWFDAWREGRTG 321
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YPL+DA M++L+ +G+M NR R +A SFLV+D+ IDWR G ++F LLD+D +N G W
Sbjct: 322 YPLVDAAMRQLNRSGYMHNRLRMVAASFLVKDLLIDWRWGEQYFAEKLLDFDLAANNGGW 381
Query: 484 TYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIV 542
+ A G D + R F+ Q++ +D +G ++ ++P+L ALP + + P + EQ++
Sbjct: 382 QWAASTGCDAQPYFRIFNPVSQSEKFDPDGRFIRRYVPELAALPDKLIHAPWQAKPEQLM 441
Query: 543 S 543
S
Sbjct: 442 S 442
>gi|338974956|ref|ZP_08630311.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
gi|338231555|gb|EGP06690.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
Length = 488
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 139/458 (30%), Positives = 221/458 (48%), Gaps = 46/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR+DLR+ D+ AL A ++ ++ +Y +D + + G P GA R +L + L
Sbjct: 10 IVWFRDDLRLSDHPALHAAAETDAPLVLLYVLDEQSTSLRPPRGRPLGGASR-WWLAQSL 68
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L+ +L RG L++R G +I LA+ A +V+ + + +ER V L++
Sbjct: 69 RSLQASLAARGQTLVLRKGAAARVISDLAQDIEAASVHWIESDVPSQSAMERDVTVALKE 128
Query: 204 VVLSSQS--NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + ++ D L+ G + V+T F K I +
Sbjct: 129 IGVQARGFRGDLLVKPASLRNKEGRGLR--------------VFTPFWKRILSLGDPPQP 174
Query: 262 IRIPSSFGPPPSVV--DWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKK 317
+ P P P+V D S LE P + G+R + GESAA R++++ +
Sbjct: 175 LPAPKKLKPGPAVASDDLASW----NLEPKHPDWAGGLRDTWTPGESAAQTRLHDFL--E 228
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYWVLF 375
+K Y R+ D +++ SP L G ISPR ++ + ++ +A+D L
Sbjct: 229 TGIKGYATLRDRP-DRDGTSRLSPHLRFGEISPRQVWHAANFAAAQKPAIASDVGK-FLS 286
Query: 376 ELMWRDYFRFISLKYGNSLFHLG--GPRKLE-----YKWSQDQKLFESWRDGCTGYPLID 428
EL WR++ R + LF L + L+ + W +D K +W+ G TGYP++D
Sbjct: 287 ELGWREFSRHL-------LFDLPDLAEKNLQSSFDAFPWRRDAKALRAWQRGRTGYPIVD 339
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M+EL TG M NR R + SFLV+ + IDWR G +WF L+D DP SN +W + AG
Sbjct: 340 AGMRELWHTGVMHNRVRMVVASFLVKHLLIDWRHGEKWFWDTLVDADPGSNPASWQWVAG 399
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G D R F+ Q + +D +G YV+ W+P+L L
Sbjct: 400 SGADAAPYFRVFNPVLQGEKFDPDGAYVSRWVPELARL 437
>gi|424881257|ref|ZP_18304889.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392517620|gb|EIW42352.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 483
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 129/454 (28%), Positives = 211/454 (46%), Gaps = 44/454 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+WFR DLR+ DN AL A S ++P+Y +P S T GA +A +L L
Sbjct: 10 ILWFRKDLRLDDNRALDAAHRSGRPIIPLYISEPEASGTG------PLGAAQAWWLHHSL 63
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L ++L R L++ G+ E++ + + GA AV+ + ++++ ++ L++
Sbjct: 64 EALDRSLRERQARLVLASGEALEVLCTFIRESGAEAVFWNRRYDPSGISIDAHIKHELEK 123
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA------KCT 257
+ ++S H +L+ G + P+ VYT F +++E
Sbjct: 124 QAIEARSFGGQLLHEPSRLMTG------NGTPYR------VYTPFWRALEGGGEPEQPLE 171
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+RI S ++ W +P +H + + GE A ++ + +
Sbjct: 172 APAKLRIASQLPKSEALESWKLLPTKPDWAVHFTDL-----WTPGEDGAHEKLRAFI--E 224
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
D L YKE R+ P S SP LA G ISP I++ + + A D ++ E+
Sbjct: 225 DALDGYKENRDYPARPATSL-LSPHLAFGEISPARIWDATRGLSKRVAAADVVHFRK-EI 282
Query: 378 MWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
WR++ F F L N G ++W D F+ W G TGYP++DA M+
Sbjct: 283 AWREFSYHLLFHFPRLASNNWNDRFDG-----FEWRNDDDDFKVWCRGMTGYPIVDAGMR 337
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L G+M NR R I SFL++D+ IDWR G WF L+D D +N +W + AG G D
Sbjct: 338 QLWRHGWMHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADTANNAASWQWVAGSGAD 397
Query: 493 PRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R F+ Q + +D +G+YV ++P+L+ L
Sbjct: 398 ASPFFRIFNPVLQGEKFDPDGDYVRTYVPELREL 431
>gi|297195865|ref|ZP_06913263.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
ATCC 25486]
gi|197720806|gb|EDY64714.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 457
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 128/447 (28%), Positives = 218/447 (48%), Gaps = 35/447 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
VA+V F +DLR+ D+ L A +++ V+P++ +DP F P R FL +
Sbjct: 3 VAVVLFTSDLRLHDHPPLRAALRAADEVVPLFVLDP--GIGAAGFEAPN----RCAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CLADL +L RG L++R G + + ++A GA V+ E L+R L
Sbjct: 57 CLADLDASLRERGGRLVVRSGPVAQQVGAIAAECGAGEVHMAAGVTRYARRREELLRTVL 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT-HFRKSIEAKCTVRG 260
++ + +++D +I + DH S V+T +FR+ + + +R
Sbjct: 117 RERGATLRTHDA--------VITVVAPGAVTPAGSDHYS---VFTPYFRRWSQQR--LRD 163
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
R P + P P + +P + + P++S G+ GGESA GR + W+ L
Sbjct: 164 PCRAPRTV-PVPVTMHGEPLPSRDAV----PRISPGLP-AGGESA--GRKRFHDWEASGL 215
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
Y + +++ L D +++ SP+L G++SP + E ++ + +L WR
Sbjct: 216 DAY-DVQHDSLAGDMTSRLSPYLHFGALSPLELVREASAH-----GGTGAEAFVRQLCWR 269
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQ-KLFESWRDGCTGYPLIDANMKELSMTGF 439
D+ + S PR ++ D + +W++G TG+P++DA M++L G+
Sbjct: 270 DFHHQVMAARPASSVEDYRPRHDRWRTQDDAAEDITAWKEGATGFPVVDAAMRQLRHEGW 329
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
M NR R + SFL + + +DWR+GA +F L+D D +N NW + AG G D R R
Sbjct: 330 MHNRARLLVASFLTKTLYVDWRIGARYFLDRLVDGDIVNNQLNWQWVAGTGTDTRPHRVL 389
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALP 526
+ Q + +D GEYV W+P+L+ +P
Sbjct: 390 NPVVQGKRFDPRGEYVRRWVPELREIP 416
>gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|386350987|ref|YP_006049235.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|346719423|gb|AEO49438.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
Length = 478
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 141/457 (30%), Positives = 210/457 (45%), Gaps = 45/457 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR+DLR+ DN AL A DS V+P Y +D +T P GA R +L L
Sbjct: 6 LVWFRDDLRLADNPALCAALDSGAPVIPFYLLD----DSTSDGHRPLGGATR-WWLGRSL 60
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L +++ RG L++R G+ +P LA A A++A + + L + L L+
Sbjct: 61 TSLAESIAQRGGRLVLRRGEALSAVPELAAETDAAALFANRLYGMDSLRDDDLF-MVLRV 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
L+ + D H + T PF V+T F K++ A +
Sbjct: 120 AGLTVRLFDSGLLHRPEAVTTKTGR------PFR------VFTPFWKTLSATLDPGLPLA 167
Query: 264 IPSSF----GPPP---SVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYF 314
P SF PPP S+ DW LE +P + G+R + GE+ A R+ +F
Sbjct: 168 APDSFPPVDDPPPASDSLADW-------SLEPTTPDWAGGLRDTWQPGEAGAQARLEAFF 220
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
+ Y R+ P ++K SP L G ISPR ++ + R L
Sbjct: 221 --NGPVADYASGRDRPDKP-LTSKLSPHLRFGEISPRQVW----TAARHHPPGGGMDAFL 273
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKL---FESWRDGCTGYPLIDANM 431
EL WR++ + + L + W++ +++ +W+ G TGYP++DA M
Sbjct: 274 RELGWREFCHHLLFQAPTMAEEPLKAEFLAFPWTEAKEIGPALAAWQSGETGYPIVDAGM 333
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TG+M NR R IA SFL++D+ I W+ G WF L+D P +N W + AG G
Sbjct: 334 RELWHTGWMHNRVRMIAASFLIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGA 393
Query: 492 DPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
D R F+ Q + +D EG YV WLP+L LP
Sbjct: 394 DAAPFFRIFNPVTQGERFDPEGAYVRRWLPELADLPS 430
>gi|407648061|ref|YP_006811820.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia brasiliensis ATCC
700358]
gi|407310945|gb|AFU04846.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia brasiliensis ATCC
700358]
Length = 441
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 138/447 (30%), Positives = 207/447 (46%), Gaps = 39/447 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V I F DLRV DN L A V+P++ +D + F P RA+FL
Sbjct: 3 VTIALFTRDLRVRDNPVLTAAHREGASVVPLFVID--EAIAGGRFAAPN----RARFLAA 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L +L L G L++R G E + ++A+ A +V+ + E+ +R L
Sbjct: 57 ALGELDAELRAIGGKLVVRRGDVVEQVAAVAEEVHADSVHIAADVSGYSRRREQALRDRL 116
Query: 202 QQ--VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT-HFRKSIEAKCTV 258
Q +L S + + P++ L+ T H V+T +FR+ EA
Sbjct: 117 AQRSCLLHSHAASITAADPEV-LVPSTGRDHFA-----------VFTPYFRRWTEAHQ-- 162
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
R + P PP D PL E EL + S + VGGE+ GR W
Sbjct: 163 RTPLGKPRELTMPPVRSD----PLPEPEELCAGDTSPQL-AVGGETT--GRKIVRDWLSG 215
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
++ Y+E RN+ L D +++ SP+L G +SP V+ R ++ + +L
Sbjct: 216 PIENYEE-RNDDLAADATSRLSPYLHFGCVSP------VELVHRVDMSTPGGHAFARQLS 268
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRD+ + + + PR E W D + +WRDG TG+P++DA M++L G
Sbjct: 269 WRDFHHQLLAARPDIAWSDYRPRPGE--WRDDPQAAAAWRDGRTGFPIVDAPMRQLQAEG 326
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+M R R I SFL + + IDWR+GA F L+D D +N NW + AG G D R +R
Sbjct: 327 WMPGRARLITASFLAKSLRIDWRVGAAHFLHWLVDADLANNQLNWQWVAGTGTDTRPNRV 386
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ +QA+ YD G+YV WLP+L L
Sbjct: 387 LNPLRQAKRYDENGDYVRRWLPELAHL 413
>gi|434391947|ref|YP_007126894.1| deoxyribodipyrimidine photo-lyase type I [Gloeocapsa sp. PCC 7428]
gi|428263788|gb|AFZ29734.1| deoxyribodipyrimidine photo-lyase type I [Gloeocapsa sp. PCC 7428]
Length = 479
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/464 (28%), Positives = 220/464 (47%), Gaps = 52/464 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L+ A S+ V+ V+C+DP + A+R ++I CL
Sbjct: 6 LFWHRRDLRIADNTGLVAARKQSQKVVGVFCLDPNILERD------DVAAVRVTYMIGCL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA--QKETCSEELN---VERLVR 198
L++ G LLI H P + IP LA + A AV+ E S+E + +E L
Sbjct: 60 QALQQRYTEVGSQLLILHDNPTQAIPRLAAALNAQAVFWNWDVEPYSQERDRTIIEALKE 119
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
K +Q L W ++ D+I V+T F ++ +K
Sbjct: 120 KGIQF----------------LHENWDQILHSPDEIRTGSHQPYTVFTPFWRNWSSKSKA 163
Query: 259 RGCIRIPSSFGPPPSVVDW----GSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
+ G + D G +PL +L + + GE+AA R+ E+
Sbjct: 164 EPVATLQGVTGLTDTERDIAQQAGVIPLPTAKDL-GFVWDRDLVIAPGEAAAQERLEEFS 222
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERERVANDSTYWV 373
+K + YKE RN + +++ S L G+I R ++ V + E R T
Sbjct: 223 YKA--ITEYKEQRN-FPAVNGTSQLSAALKFGAIGIRTVWAATVAALENSRSDETDTSIR 279
Query: 374 LF--ELMWRDYFRFISLKYGNSLFHL-----GGPRKL--EYKWSQDQKLFESWRDGCTGY 424
+ EL WR++ Y ++++H G R+ + + +++LF++W G TGY
Sbjct: 280 AWQQELAWREF-------YQHAMYHFPELATGAYREAFKNFPYQNNEELFQAWCAGKTGY 332
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
P++DA M++++ +G+M NR R I +FL +D+ ID R+G ++F L+D D +N G W
Sbjct: 333 PIVDAAMRQMNESGWMHNRCRMIVANFLTKDLLIDPRLGEKYFYQRLIDGDLSANNGGWQ 392
Query: 485 YGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
+ A G DP+ R F+ QAQ +D EGEY+ W+P+L+++ E
Sbjct: 393 WSASSGMDPKPVRIFNPASQAQKFDPEGEYIREWIPELRSVDTE 436
>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 518
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 218/459 (47%), Gaps = 40/459 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
I W R DLRV DN L KA+ S ++ ++C+D T R +++ C
Sbjct: 47 VIFWHRRDLRVSDNIGLSKAYQHSSKLVGLFCLD------TDILNQDNVAPARITYMLGC 100
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DLR++ G LLI G P +IIP +A + V+ + VE +K
Sbjct: 101 LQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNND-------VEPYSKKRDN 153
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSI--EAKCTVR 259
QV+ + Q + + W ++ DI ++ P VYT F +S E K +
Sbjct: 154 QVIEALQERGIHS-----QTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIA 208
Query: 260 GCIRIPSSFGPPP--SVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+ S +V + G + L +L + GE+AA ++N ++
Sbjct: 209 QALGKLESLSEEEINTVKNLGIIDLPTAKDL-GYSWDAPLILEPGETAAKEQLN--YFCD 265
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS-----YERERVANDSTYW 372
L+ Y+E RN G + ++ SP G I R +++ S Y E N T+
Sbjct: 266 SLIYNYQEQRN-YPGINGTSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTW- 323
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDA 429
E+ WR++++ + GP + E+K W +++ F++W +G TGYP++DA
Sbjct: 324 -QQEIAWREFYQHCMYFFPELA---TGPYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDA 379
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D +N G W + A
Sbjct: 380 AMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASS 439
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G DP+ R F+ QAQ YD +GEY+ W+P++ +L E
Sbjct: 440 GMDPKPLRIFNPASQAQKYDPDGEYIRLWVPEISSLDTE 478
>gi|414342179|ref|YP_006983700.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
gi|411027514|gb|AFW00769.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
Length = 502
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 232/498 (46%), Gaps = 73/498 (14%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLR D+ AL A + ++ VY +D + + G GA R +L L
Sbjct: 33 IVWFREDLRFSDHPALQAATATGHPLICVYVLDDE-TPALHALG----GASR-WWLHGAL 86
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+DLR L LL G E++IP LAK A VY +E + + L +
Sbjct: 87 SDLRSTLSRHHGTLLTLKGSAEKLIPQLAKETDAQGVYWHHRLHQKEREQDEQIASALDK 146
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+SS+++ WGT + + V+T F K+ +++ +
Sbjct: 147 QGVSSEAS------------WGTVLLDPTQVQTKEGRFYQVFTAFWKAFQSQD-----VP 189
Query: 264 IPSSFGPPPSVVDWGSVP--LIEQLELHS-------PKVSKGMR--FVGGESAALGRVNE 312
+P PP+ + + +P L+ + L P + G+R + GE A + +
Sbjct: 190 VPLD---PPAHLSFHPLPDDLLSKYRLDETTLLPTHPDWAAGLRATWEPGEREAHEHLED 246
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
+ + D + Y + R+EM G + +++ SP+LASG+ISPR ++E + +++ ++
Sbjct: 247 FL-RHDCAR-YGKGRDEM-GREGTSRLSPYLASGAISPRQVWEAI---QKKGAHDEGARI 300
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLG-------GPRKLEYKWSQDQKLFESWRDGCTGYP 425
L E+ WR++ ++ +LFH G + + W + ++ +W+ G TG P
Sbjct: 301 FLSEIGWREFAKY-------TLFHQPRLPDVSLGQKFGKMPWRKSEQDLTAWQQGRTGVP 353
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M++L TG+M NR R I SFL + + IDWR G WF L+D D SN NW +
Sbjct: 354 VVDAGMRQLWKTGWMHNRARMIVGSFLTKHLLIDWRQGEAWFRDTLVDADWASNAMNWQW 413
Query: 486 GAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP----------- 533
AG G D R F+ +Q +D +G+Y+ W+P+LK L + P
Sbjct: 414 VAGTGIDASPFFRIFNPTRQGVKFDPDGDYIRQWVPELKKLSGKDLFEPWNAKEEDLERA 473
Query: 534 ----GGSYIEQIVSLKHG 547
G +Y IV LK G
Sbjct: 474 GVTFGKTYPRPIVDLKEG 491
>gi|416411130|ref|ZP_11688696.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260360|gb|EHJ09791.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 518
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 218/459 (47%), Gaps = 40/459 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
I W R DLRV DN L KA+ S ++ ++C+D T R +++ C
Sbjct: 47 VIFWHRRDLRVSDNIGLSKAYQHSSKLVGLFCLD------TDILNQDNVAPARITYMLGC 100
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DLR++ G LLI G P +IIP +A + V+ + VE +K
Sbjct: 101 LQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNND-------VEPYSKKRDN 153
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSI--EAKCTVR 259
QV+ + Q + + W ++ DI ++ P VYT F +S E K +
Sbjct: 154 QVIEALQERGIHS-----QTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIA 208
Query: 260 GCIRIPSSFGPPP--SVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+ S +V + G + L +L + GE+AA ++N ++
Sbjct: 209 QALGKLESLSEEEINTVKNLGIIDLPTAKDL-GYSWDAPLILEPGETAAKEQLN--YFCD 265
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS-----YERERVANDSTYW 372
L+ Y+E RN G + ++ SP G I R +++ S Y E N T+
Sbjct: 266 SLIYNYQEQRN-YPGINGTSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTW- 323
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDA 429
E+ WR++++ + GP + E+K W +++ F++W +G TGYP++DA
Sbjct: 324 -QQEIAWREFYQHCMYFFPELA---TGPYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDA 379
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D +N G W + A
Sbjct: 380 AMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASS 439
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G DP+ R F+ QAQ YD +GEY+ W+P++ +L E
Sbjct: 440 GMDPKPLRIFNPASQAQKYDPDGEYIRLWVPEISSLDTE 478
>gi|453328412|dbj|GAC89303.1| deoxyribodipyrimidine photolyase [Gluconobacter thailandicus NBRC
3255]
Length = 483
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 232/498 (46%), Gaps = 73/498 (14%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLR D+ AL A + ++ VY +D + + G GA R +L L
Sbjct: 14 IVWFREDLRFSDHPALQAATATGHPLICVYVLDDE-TPALHALG----GASR-WWLHGAL 67
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+DLR L LL G E++IP LAK A VY +E + + L +
Sbjct: 68 SDLRSTLSRHHGTLLTLKGSAEKLIPQLAKETDAQGVYWHHRLHQKEREQDEQIASALDK 127
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+SS+++ WGT + + V+T F K+ +++ +
Sbjct: 128 QGVSSEAS------------WGTVLLDPKQVQTKEGRFYQVFTAFWKAFQSQD-----VP 170
Query: 264 IPSSFGPPPSVVDWGSVP--LIEQLELHS-------PKVSKGMR--FVGGESAALGRVNE 312
+P PP+ + + +P L+ + L P + G+R + GE A + +
Sbjct: 171 VPLD---PPAHLSFHPLPDDLLSKYRLDETTLLPTHPDWAAGLRATWEPGEREAHEHLED 227
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
+ + D + Y + R+EM G + +++ SP+LASG+ISPR ++E + +++ ++
Sbjct: 228 FL-RHDCAR-YGKGRDEM-GREGTSRLSPYLASGAISPRQVWEAI---QKKGAHDEGARI 281
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLG-------GPRKLEYKWSQDQKLFESWRDGCTGYP 425
L E+ WR++ ++ +LFH G + + W + ++ +W+ G TG P
Sbjct: 282 FLSEIGWREFAKY-------TLFHQPRLPDVSLGQKFGKMPWRKSEQDLTAWQQGRTGVP 334
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M++L TG+M NR R I SFL + + IDWR G WF L+D D SN NW +
Sbjct: 335 VVDAGMRQLWKTGWMHNRARMIVGSFLTKHLLIDWRQGEAWFRDTLVDADWASNAMNWQW 394
Query: 486 GAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP----------- 533
AG G D R F+ +Q +D +G+Y+ W+P+LK L + P
Sbjct: 395 VAGTGIDASPFFRIFNPTRQGVKFDPDGDYIRQWVPELKKLSGKDLFEPWNAKEEDLERA 454
Query: 534 ----GGSYIEQIVSLKHG 547
G +Y IV LK G
Sbjct: 455 GVTFGKTYPRPIVDLKEG 472
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 209/455 (45%), Gaps = 46/455 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++WFR DLR+ DN AL A SS ++PVY +P ++ G + +L L
Sbjct: 12 LLWFRKDLRLDDNHALQSAATSSRPLIPVYIREPGVTERG------PLGGAQEWWLHYSL 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L+ L G L++RHG+ ++ L K GA AV + + V+ ++K L+
Sbjct: 66 AALQIALDAVGSKLILRHGEALTVLEKLVKETGAEAVVWNRRYDPAGVEVDTQIKKALRS 125
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + S H +L GT ++ PF + F +S E + R
Sbjct: 126 KGIEANSFAGQLLHEPTRLRTGTGNHYKTYTPF--------WRAFEQSGEPPFPIEAPRR 177
Query: 264 I--PSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ P + S+ W +P + + GE+AAL ++ ++
Sbjct: 178 LLAPGRWPQSDSLDAWSLLPAKPNWASEFADI-----WTPGEAAALDKLKDF-------- 224
Query: 322 VYKETRNEMLGPDYSTK-----FSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
V + +G D+ K SP LA G ISP ++ + ++V D+ E
Sbjct: 225 VDGALNDYAIGRDFPDKPATSLLSPHLALGEISPARMWHATRGLP-DKVGTDNVVRFRKE 283
Query: 377 LMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
++WR++ F F L+ N R ++ W D K +SW+ G TGYP++DA M
Sbjct: 284 IIWREFCYHQLFHFPKLRTAN-----WNDRYDDFPWLSDAKRLKSWQRGQTGYPIVDAGM 338
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L G+M NR R IA SFL++D+ IDWR G WF L+D DP +N NW + AG G
Sbjct: 339 RQLWRHGWMHNRVRMIAASFLIKDLLIDWREGEAWFRDTLVDADPAANTANWQWVAGSGA 398
Query: 492 DPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
D R F+ Q + +D +G YV ++P+L L
Sbjct: 399 DASPFFRIFNPVLQGEKFDPDGGYVRTFVPELSKL 433
>gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|451814540|ref|YP_007450992.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|2499552|sp|Q55081.1|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780509|gb|AGF51478.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 488
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 134/464 (28%), Positives = 222/464 (47%), Gaps = 61/464 (13%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ ++W R DLR+ D+ AL KA + ++ V+C+D + Q R +L+
Sbjct: 18 LILLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAE------DMAPARVAYLLG 71
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+ + G LL+ P +++P LA + GAH V +T + V + L
Sbjct: 72 CLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQAL 131
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ L+ + W M+H ++ S VYT F K+
Sbjct: 132 RERGLAIATE------------WDQLMHHPGEVLTQAGSPYTVYTPFWKNWS-------- 171
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHS------PKVS-------KGMRFVGGESAALG 308
++P + P P+ D + E+ +L P+++ + + GE AA
Sbjct: 172 -QLPKT-SPVPTPKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQ 229
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERERV-- 365
R++ + L+ Y++ RN D +++ S L G ISPR +++ ++++E+ R
Sbjct: 230 RLDWFV--AHGLEEYQQNRN-FPALDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEE 286
Query: 366 ANDSTYWVLFELMWRDYFR-----FISLKYG--NSLFHLGGPRKLEYKWSQDQKLFESWR 418
A S EL WR++++ F +L G S F E+ W ++Q F++W
Sbjct: 287 ARASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQ-------EFPWEENQDHFQAWC 339
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
+G TGYP+IDA M +L+ TG+M NR R I SFL++D+ ++W+ G +F L D D +
Sbjct: 340 EGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAA 399
Query: 479 NYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL 522
N G W + A G DP+ R F+ QAQ +D EGEY+ WLPQL
Sbjct: 400 NNGGWQWSASSGMDPKPLRIFNPHTQAQKFDPEGEYIRTWLPQL 443
>gi|421782185|ref|ZP_16218644.1| deoxyribodipyrimidine photolyase [Serratia plymuthica A30]
gi|407755741|gb|EKF65865.1| deoxyribodipyrimidine photolyase [Serratia plymuthica A30]
Length = 476
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 217/455 (47%), Gaps = 41/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN+AL A D + VL V+ P Q H + +A F+
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPAARVLAVFIATP--GQWRQH----EMAPCQAAFIHAN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH----AVYAQKETCSEELNVERLVR 198
L +++ L +RG+ L+ ++ A A++ ++ EL ++ +
Sbjct: 59 LLQVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQ 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ L V+ +D P G MY +YT FRK+ + T
Sbjct: 119 RRLSGQVICQSFDDSLLLPPGSVQTGGGEMYK-------------IYTPFRKAFIQRLTE 165
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPL-IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+P+ P + G++P+ + P+V G F GE AAL R+ + +
Sbjct: 166 SDVRSLPA-----PKRREGGALPVSVAPAAFDYPQVEAGADFPAGEDAALQRLRAFC--R 218
Query: 318 DLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST--YWV 373
+ ++ Y + R+ + G ++ SP+LA G +SPR + +++ + + N + +
Sbjct: 219 EQVQDYLQQRDFPAIAG---TSSLSPYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGW 275
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + + Y H + +W D L +W+ G TGYP++DA M+
Sbjct: 276 LNELIWREFYRHLMVAYPALCRHRPFIEWTDRVRWRNDDALLLAWQKGATGYPIVDAAMR 335
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I+ SFLV+D+ IDWR G +F + LLD D +N G W + A G D
Sbjct: 336 QLNKTGWMHNRLRMISASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTD 395
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D +G ++ WLP+L +P
Sbjct: 396 AAPYFRIFNPTTQGERFDPQGTFIRKWLPELADVP 430
>gi|383322123|ref|YP_005382976.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325292|ref|YP_005386145.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491176|ref|YP_005408852.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436443|ref|YP_005651167.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|339273475|dbj|BAK49962.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|359271442|dbj|BAL28961.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274612|dbj|BAL32130.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277782|dbj|BAL35299.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
Length = 479
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 134/464 (28%), Positives = 222/464 (47%), Gaps = 61/464 (13%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ ++W R DLR+ D+ AL KA + ++ V+C+D + Q R +L+
Sbjct: 9 LILLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAE------DMAPARVAYLLG 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+ + G LL+ P +++P LA + GAH V +T + V + L
Sbjct: 63 CLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQAL 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ L+ + W M+H ++ S VYT F K+
Sbjct: 123 RERGLAIATE------------WDQLMHHPGEVLTQAGSPYTVYTPFWKNWS-------- 162
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHS------PKVS-------KGMRFVGGESAALG 308
++P + P P+ D + E+ +L P+++ + + GE AA
Sbjct: 163 -QLPKT-SPVPTPKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQ 220
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERERV-- 365
R++ + L+ Y++ RN D +++ S L G ISPR +++ ++++E+ R
Sbjct: 221 RLDWFV--AHGLEEYQQNRN-FPALDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEE 277
Query: 366 ANDSTYWVLFELMWRDYFR-----FISLKYG--NSLFHLGGPRKLEYKWSQDQKLFESWR 418
A S EL WR++++ F +L G S F E+ W ++Q F++W
Sbjct: 278 ARASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQ-------EFPWEENQDHFQAWC 330
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
+G TGYP+IDA M +L+ TG+M NR R I SFL++D+ ++W+ G +F L D D +
Sbjct: 331 EGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAA 390
Query: 479 NYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL 522
N G W + A G DP+ R F+ QAQ +D EGEY+ WLPQL
Sbjct: 391 NNGGWQWSASSGMDPKPLRIFNPHTQAQKFDPEGEYIRTWLPQL 434
>gi|407958302|dbj|BAM51542.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 482
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 134/464 (28%), Positives = 222/464 (47%), Gaps = 61/464 (13%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ ++W R DLR+ D+ AL KA + ++ V+C+D + Q R +L+
Sbjct: 12 LILLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAE------DMAPARVAYLLG 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+ + G LL+ P +++P LA + GAH V +T + V + L
Sbjct: 66 CLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQAL 125
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ L+ + W M+H ++ S VYT F K+
Sbjct: 126 RERGLAIATE------------WDQLMHHPGEVLTQAGSPYTVYTPFWKNWS-------- 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHS------PKVS-------KGMRFVGGESAALG 308
++P + P P+ D + E+ +L P+++ + + GE AA
Sbjct: 166 -QLPKT-SPVPTPKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQ 223
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERERV-- 365
R++ + L+ Y++ RN D +++ S L G ISPR +++ ++++E+ R
Sbjct: 224 RLDWFV--AHGLEEYQQNRN-FPALDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEE 280
Query: 366 ANDSTYWVLFELMWRDYFR-----FISLKYG--NSLFHLGGPRKLEYKWSQDQKLFESWR 418
A S EL WR++++ F +L G S F E+ W ++Q F++W
Sbjct: 281 ARASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQ-------EFPWEENQDHFQAWC 333
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
+G TGYP+IDA M +L+ TG+M NR R I SFL++D+ ++W+ G +F L D D +
Sbjct: 334 EGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAA 393
Query: 479 NYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL 522
N G W + A G DP+ R F+ QAQ +D EGEY+ WLPQL
Sbjct: 394 NNGGWQWSASSGMDPKPLRIFNPHTQAQKFDPEGEYIRTWLPQL 437
>gi|406832861|ref|ZP_11092455.1| hypothetical protein SpalD1_14519 [Schlesneria paludicola DSM
18645]
Length = 511
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 144/480 (30%), Positives = 211/480 (43%), Gaps = 32/480 (6%)
Query: 60 NHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRH 119
N E+ TSK+L ++VWFR+DLR+ D AL+ A E V+PVY P
Sbjct: 13 NSATIESTATTTSKSLD-TMTHPSLVWFRHDLRLQDQPALVAAVARGEPVIPVYIWSPDE 71
Query: 120 SQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA 179
G GA +L L L + L G L+IR G + SL GA A
Sbjct: 72 D------GDWPPGAASRWWLHHSLHQLNEQLEELGSRLIIRQGNALTELLSLIDDTGADA 125
Query: 180 VYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHS 239
VY + + + V+ L+Q + +QS + G ++ I
Sbjct: 126 VYWTRRYEPAAIQRDSRVKTELRQRNVLAQSFN------------GQLLFEPWQIETKQG 173
Query: 240 SLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK---- 295
V+T F K+ + T PS F P W + L L P ++
Sbjct: 174 RPYQVFTAFWKTCLTQRTPDEPEPAPSDFLSP---RPWPKSAKLNDLSLR-PTIAWDTGF 229
Query: 296 GMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE 355
R+V GE AA ++ + V + G +++ SP L G ISPR I+
Sbjct: 230 AERWVPGEKAARQELHRFLESPVFDYVTMRDLPALHG---TSRLSPHLHFGEISPRTIWH 286
Query: 356 EVKSYERERVAN-DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLF 414
E + R+ + S L E+ WR++ + + N+ + W D
Sbjct: 287 ETQRRLRQHSQDPTSAETFLKEVGWREFAHHLLFHFPNTPREPLRSEFANFPWINDNPRL 346
Query: 415 ESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDY 474
++W+ G TGYP++DA M+EL TG+M NR R I SFLV+D+ I W+ GAEWF L+D
Sbjct: 347 KAWQTGQTGYPIVDAGMRELWTTGWMHNRVRMIVASFLVKDLLIPWQKGAEWFWDTLVDA 406
Query: 475 DPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D SN W + AG G D R F+ Q+Q +D EG Y+ W+P+LK LP + + P
Sbjct: 407 DLASNTLGWQWTAGCGADAAPFFRIFNPVLQSQKFDAEGHYIRRWVPELKNLPTKWIHAP 466
>gi|398830139|ref|ZP_10588333.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
gi|398215848|gb|EJN02409.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
Length = 489
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 143/498 (28%), Positives = 233/498 (46%), Gaps = 50/498 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV FR+DLR+ DN AL A + + V+ V+ D S++ G GA R +L L
Sbjct: 17 IVLFRHDLRLADNRALYAAAQTGKPVITVFIRDEETSKSVRPLG----GA-RQWWLHHSL 71
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L ++L L++R G + I+ +L A V + + V+ ++ L +
Sbjct: 72 VSLTRSLAKLDQKLILRKGATQAIVRNLLDDTKADMVLWNRRYDPAGIEVDTALKAELLE 131
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
++++S D H KL G Y+ V+T F R C+
Sbjct: 132 RKITAESFDGHLLHEPYKLKTGAGGYYR------------VFTPF---------WRACLN 170
Query: 264 IPSSFGP---PPSVVDWGSVPLIEQLELHS-----PKVSKGM--RFVGGESAALGRVNEY 313
P P P + +W S ++L+ + P +KG + GE A +++++
Sbjct: 171 GPEPRNPVPEPKKLRNWSSDITSDELDDWALLPTKPDWAKGFDENWTPGEEGAREKLSDF 230
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE-RERVANDSTYW 372
D + YK R ++ G + +++ SP LA G I+P I+ KS +++ T+
Sbjct: 231 L--DDRVPSYKNGR-DIPGTEATSRLSPHLAHGEITPFQIWHASKSPAIKDQNGGLDTF- 286
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLIDAN 430
L E+ WR++ L + N H K ++WS+ F++W+ G TGYP++DA
Sbjct: 287 -LKEVGWREFS--YHLLFNNPKLHTENFNKSFDGFEWSRKVSHFDAWKQGNTGYPIVDAG 343
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L TG+M NR R IA SFL++ + IDWR G EWF L+D DP SN +W + AG G
Sbjct: 344 MRQLWQTGWMHNRVRMIAASFLIKHLLIDWRKGEEWFWDTLVDADPASNAASWQWVAGSG 403
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNI 549
D R F+ Q + +D G YV ++P LK LP + + P + +LK NI
Sbjct: 404 ADAAPYFRVFNPIIQGEKFDPNGRYVRQFIPILKDLPDKYLHKP---WTAPAATLKAANI 460
Query: 550 NQNRNQNDSLTRTGRRNN 567
+ ++ + + G N
Sbjct: 461 DLGKDYPEPIVEHGTARN 478
>gi|332524149|ref|ZP_08400379.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
gi|332107488|gb|EGJ08712.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
Length = 505
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 147/486 (30%), Positives = 224/486 (46%), Gaps = 70/486 (14%)
Query: 77 RNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRA 136
+NG A+VW R DLR DN AL A ++ V V+ DP + P+ R
Sbjct: 2 KNGIDNALVWLRRDLRTEDNAALYHALRAARRVWCVFVFDPEILEP-----LPRADR-RV 55
Query: 137 QFLIECL----ADLRKNLMNRGLN---LLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE 189
+F+ + + A+LR + G++ L++RHG+P + IP LA + GA AVYA + E
Sbjct: 56 EFIRDSVVGVDAELRALAASHGIDGAGLIVRHGRPLQEIPRLAAALGAQAVYASHDDEPE 115
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
L + VR L ++ S +H ++ D++ V+T +R
Sbjct: 116 ALARDARVRGALADAGIAFHG---SKDH---------VIFERDEVLTQGGGPFSVFTPYR 163
Query: 250 KSIEAKC-----TVRGCIRIPSSFGPPPSVVDWGSVPLI--EQLELHSPKVSKGMRFVGG 302
+ K + R + P P+ ++ I E LH+ K+ G GG
Sbjct: 164 NAWLKKLDDFYLSSYPVERHAGALAPKPAGETLPTLADIGFESTNLHALKLPSGP--AGG 221
Query: 303 E---SAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
+ L RV+ Y +D V GP Y P L G++S R + E +
Sbjct: 222 RELLADFLERVDHYADWRDFPAVK--------GPSY---LGPHLRFGTVSIRRLARE--A 268
Query: 360 YERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFH-----LGGPRKLEYK---WSQDQ 411
++R + L EL+WRD++ + L H +GG K EY W +
Sbjct: 269 HQRLTAGSRGAEVWLSELVWRDFY--------HQLLHHHPRVVGGCFKPEYDRLHWEHGK 320
Query: 412 ---KLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFE 468
+LF +W +G TGYP++DA M +L+ TG+M NR R I+ SFL +D+GIDWR G WF
Sbjct: 321 HADELFAAWCEGRTGYPIVDAAMHQLTRTGYMHNRLRMISASFLTKDLGIDWRRGEAWFA 380
Query: 469 TCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
L D+D SN G W + A G D + R F+ Q++ +D EG ++ +LPQL LP
Sbjct: 381 RHLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVSQSERFDPEGRFIRRYLPQLAKLPD 440
Query: 528 ERRNFP 533
+ P
Sbjct: 441 TLLHAP 446
>gi|374261679|ref|ZP_09620257.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
gi|363537773|gb|EHL31189.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
Length = 477
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 135/457 (29%), Positives = 219/457 (47%), Gaps = 43/457 (9%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
AIVWFR DLR DN+AL +A + + ++P+Y +SQ + GA + +L
Sbjct: 2 STAIVWFRQDLRCNDNQALAEACNHHQYIIPLYI----YSQES-------LGAAQHWWLH 50
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
L L+K L +GL+L ++ G+ II L K+ AVY + C E +++R K
Sbjct: 51 HSLLALQKELKKQGLDLCLKQGQALSIIHELIKNHKIEAVYWNR--CYEPKSIQR--DKQ 106
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
++ + S N L W + D V+T + K + T
Sbjct: 107 IKDELRLKGLQVYSFNGSLLNEPWTVKNKNGDYF--------KVFTPYWKQCIRQTTQSR 158
Query: 261 CIRIPSSFGPPP------SVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
I PPP + DW +P + P + GE A+ ++N F
Sbjct: 159 VSSINQR--PPPLTSTSEQLSDWRLLPQKPNWAIEFPNY-----WEPGEHGAMNKLN--F 209
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DSTYWV 373
+ + L+ Y+E RN +++ +P L G ISP ++ ++ + + + S
Sbjct: 210 FIEHHLQDYQEARNHP-SKTATSRLAPHLHFGEISPWQVWNAIEEAKLQPKCDLRSADHF 268
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL WR+ F + L + L + ++ + + W QD+ + W+ G TG+P++DA M+
Sbjct: 269 LAELGWRE-FSYYLLYHFPELPNKNFRQEFDAFPWQQDETHLKCWQTGMTGFPIVDAGMR 327
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TG+M NR R I SFL++D+ IDWR GA WF LLD D +N +W + AG G D
Sbjct: 328 ELWHTGYMHNRVRMIVASFLIKDLMIDWRAGAAWFYNTLLDADLANNSASWQWVAGTGAD 387
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q++ +D +GEY+ W+P+L +P++
Sbjct: 388 SAPYFRIFNPTLQSEKFDPQGEYIKMWIPELSQVPRQ 424
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 129/475 (27%), Positives = 218/475 (45%), Gaps = 50/475 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAW---DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQF 138
+A+VW R DLR+ DN AL +A VL ++ DP T + F
Sbjct: 19 IALVWHRRDLRIDDNPALSEAIAQVGDQGKVLGLFIFDPDILDDGV------TEGSKVDF 72
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
++ CL +L+ N G +LL +G+P + SLAK+ ++ ++ + +R
Sbjct: 73 MLGCLRELQTNYRRLGSDLLFMYGEPITSLCSLAKAINTSHLFFNQDVEPFAIKRDREAT 132
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ LQ++ + QS + LI + P+ VYT F ++ ++K
Sbjct: 133 QALQEIGVKVQS------FVDIGLIAPDAIATQAGEPYK------VYTPFWRNWQSKPK- 179
Query: 259 RGCIRIPSSFGPPPSVVDWGS---VPLIEQLELHSPKVSKGMRFV-GGESAALGRVNEYF 314
P P + S +P+I L K + GESAAL + +
Sbjct: 180 ------PQPLDAPQKLTGLASYENLPVIPLPSLRELKFINDITLPESGESAALALLEAFC 233
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
+L+ +T + ++ SP L G++ R ++E+ + ++ +++ +
Sbjct: 234 DGNGILRY--QTERDFPAHAGTSTLSPHLRFGTVGIRRVWEKAIAAQQLVRSDEDLAGIT 291
Query: 375 F---ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL WR++++ + + P+ + W D + FE+W G TGYP++DA M
Sbjct: 292 IWQQELAWREFYQHVLFHFPALATGAYRPQMQSFPWDDDPEKFEAWCAGLTGYPIVDAAM 351
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ TG+M NR R I SFL +D+ I+W++G +F LLD D +N G W + A G
Sbjct: 352 RQLNQTGWMHNRCRMIVASFLTKDLIINWQLGERYFMQKLLDGDLAANNGGWQWSASSGM 411
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPK-------------ERRNFP 533
DP+ R F+ QA+ YD EGEY+ WLP+L+ L +RRN+P
Sbjct: 412 DPKPLRIFNPASQARKYDPEGEYILRWLPELQGLTTAELLSGNIPPHQCQRRNYP 466
>gi|365866676|ref|ZP_09406283.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
gi|364003865|gb|EHM24998.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
Length = 451
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 127/442 (28%), Positives = 209/442 (47%), Gaps = 33/442 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+V F +DLR+ DN L A ++ V+P++ D + GF R FL +CL
Sbjct: 1 MVLFTSDLRLHDNPVLRAALRDADEVVPLFVRD----DAVHRAGFDAPN--RLAFLADCL 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L L +RG L++R G+ ++ +A+ GA +V+ E +R+ L
Sbjct: 55 AALDAGLRHRGGRLVVRRGEAAAVVRRVAEETGAASVHVAAGVSRYAARREERIREALAG 114
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ +D T + +P V+T + + EA VRG +
Sbjct: 115 TGCELRVHDAVV----------TALAPGRVVPTGGKDHFAVFTPYFRRWEA-AGVRGTLT 163
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVY 323
P P V S+P + ++ SP +++G GE A GR W + Y
Sbjct: 164 APREVRVPDGVSG-DSLPDRDTVKNLSPGLARG-----GEDA--GRKLVTAWLNGPMADY 215
Query: 324 KETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYF 383
++ +++ G D +++ SP L G++S E+ RE+ + +V +L WRD+
Sbjct: 216 EDGHDDLAG-DATSRLSPHLHFGTVSA----AELVHRAREKGGSGGEAFVR-QLAWRDFH 269
Query: 384 RFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNR 443
+ ++ + PR +W D+ ++WR G TGYPL+DA M++L+ G+M NR
Sbjct: 270 HQVLADRPDASWSDYRPR--HDRWRSDEDEIDAWRTGRTGYPLVDAAMRQLAHEGWMHNR 327
Query: 444 GRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPK 503
GR +A SFL + + +DWR+GA F L+D D +N NW + AG G D R +R +
Sbjct: 328 GRMLAASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNPVI 387
Query: 504 QAQNYDREGEYVAYWLPQLKAL 525
Q + +D G+YV W+P+L L
Sbjct: 388 QGKRFDPRGDYVRRWVPELAGL 409
>gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
Length = 476
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 217/455 (47%), Gaps = 41/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN+AL A D + VL V+ P Q H P+ A F+
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPAARVLAVFIATP--GQWRQHEMAPRQAA----FIHAN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH----AVYAQKETCSEELNVERLVR 198
L +++ L +RG+ L+ ++ A A++ ++ EL ++ +
Sbjct: 59 LLQVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQ 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ L V+ +D P G MY +YT FRK+ + T
Sbjct: 119 RRLSGQVICQSFDDSLLLPPGSVQTGGGEMYK-------------IYTPFRKAFIQRLTE 165
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPL-IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+P+ P + G++P+ + P+V G F GE AAL R+ + +
Sbjct: 166 SDVRSLPA-----PKRREGGALPVSVAPAAFDYPQVEAGADFPAGEDAALKRLRAFC--R 218
Query: 318 DLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST--YWV 373
+ ++ Y + R+ + G ++ SP+LA G +SPR + +++ + + N + +
Sbjct: 219 EQVQDYLQQRDFPAIAG---TSSLSPYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGW 275
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + + Y H + +W + L +W+ G TGYP++DA M+
Sbjct: 276 LNELIWREFYRHLMVAYPALCRHRPFIEWTDRVRWRNNDALLLAWQKGATGYPIVDAAMR 335
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I+ SFLV+D+ IDWR G +F + LLD D +N G W + A G D
Sbjct: 336 QLNKTGWMHNRLRMISASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTD 395
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D +G ++ WLP+L +P
Sbjct: 396 AAPYFRIFNPTTQGERFDPQGTFIRKWLPELADVP 430
>gi|344942901|ref|ZP_08782188.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
gi|344260188|gb|EGW20460.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
Length = 453
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 128/452 (28%), Positives = 213/452 (47%), Gaps = 49/452 (10%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
++ FR DLR+ DN ALL+A S V+P + DPR Q H P QF++
Sbjct: 5 STSLFIFRRDLRLQDNTALLEALRLSGQVIPCFIFDPR--QIEPH---PYQSKPGLQFML 59
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ + DL++ L + G L + H PE+++ L + AV+ ++ + +
Sbjct: 60 QSIQDLQQQLQSAGGKLALYHALPEQVVRQLVEQQQIQAVFINRDYTPFSRRRDDELAAV 119
Query: 201 LQQVVLSSQS-NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+Q+ ++ + D N P+ + +D P+ V+T F + +
Sbjct: 120 CKQLGIALHTLPDSLLNEPEQAV-------KMDKTPYK------VFTAFYNNAKQFPVAL 166
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELH--SPKVSKGMRFVGGESAALGRVNEYFWKK 317
+ + S+F + S I+QL+L P + G + A L R+ +Y
Sbjct: 167 PEVLVKSNF------LAAASEFTIDQLDLSVTEPAIKGGRK---QALAILDRLGDYV--- 214
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
Y TR+ D ++K S L G+ S R ++ + E++ ++ ++ +L
Sbjct: 215 ----DYLNTRD-FPALDATSKLSAHLKFGTCSVREVFYAIT----EQLGSEHP--LIRQL 263
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
WRD+F I+ + + + W + F++W DG TG+P++DA M+EL+ T
Sbjct: 264 YWRDFFTHIAYHFPQVFGRAFLEKFADLTWDNNPDYFQAWCDGKTGFPIVDAGMRELNAT 323
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+M NR R I SFLV+D+ IDWR G +F L+DYDPC N GNW + A G D +
Sbjct: 324 GYMHNRVRMITASFLVKDLHIDWRWGERYFARHLVDYDPCVNNGNWQWTASTGCDAQP-- 381
Query: 498 YFSIPK---QAQNYDREGEYVAYWLPQLKALP 526
YF I Q +D++ Y+ WLP+L+A P
Sbjct: 382 YFRILNPWLQQLKFDQDCRYIYRWLPELQAFP 413
>gi|407781615|ref|ZP_11128833.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
gi|407207832|gb|EKE77763.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
Length = 497
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 143/475 (30%), Positives = 222/475 (46%), Gaps = 49/475 (10%)
Query: 74 ALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGA 133
++ R+ ++WFR DLR+ DN AL A +S + +LPVY +D + + G GA
Sbjct: 13 SMHRDSDRPLLLWFRQDLRLADNPALRAAVESGQPILPVYILD-DETPGAWAIG----GA 67
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
R +L L L +L G L++R G E+I SL + GA AVY + C E
Sbjct: 68 AR-WWLHHSLTALSHDLKALGAPLILRRGDSREVIDSLVREAGATAVYWNR--CYEPFAR 124
Query: 194 ER--LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
+R ++ L+Q + ++S + + H T+ + PF VY+ F ++
Sbjct: 125 KRDEAIKATLKQDGIEARSFNSALLHEPW------TVENKSGEPFR------VYSAFWRA 172
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQL---ELHSPKVSKGMRF----VGGES 304
C +G P P P + S P + + +L K + RF GE+
Sbjct: 173 ----CLAKGK---PDKPLPAPETLVAASAPASDSIGDWKLLPTKPNWAKRFESAWTPGEN 225
Query: 305 AALGRVNEYFWKKDLLKVYKETRNEMLGPDY--STKFSPWLASGSISPRYIYEEVKSYER 362
A R+ + + + YK R+ PD +++ SP L G I PR I+ ++
Sbjct: 226 GAQERLTGFL--DEAVNRYKAERDR---PDIEATSRLSPHLHFGEIGPRQIWHATRAAMA 280
Query: 363 ERVAND-STYWVLFELMWRDYFRFISLKYGNSLF--HLGGPRKLEYKWSQDQKLFESWRD 419
N+ S L E+ WR++ L Y N H P ++ W ++ K +W+
Sbjct: 281 AHDLNEASAEKFLSEVGWREFSH--HLLYHNDALPEHPLRPEFADFPWHENDKALTAWQR 338
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TGYP++DA M+EL TG+M NR R I SFLV+D+ I W+ G WF L+D D +N
Sbjct: 339 GLTGYPIVDAGMRELWATGWMHNRVRMIVASFLVKDLLIPWQEGEAWFWDTLVDADLANN 398
Query: 480 YGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+W + AG G D R F+ Q + +D EG YV W+P+L +P + P
Sbjct: 399 AASWQWVAGCGADAAPYFRIFNPVLQGEKFDPEGAYVRRWVPELAKMPASHIHKP 453
>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
Length = 466
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 207/450 (46%), Gaps = 48/450 (10%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
W R DLR+ D+ AL A V+PV+ +D R Q K + R QFL L
Sbjct: 7 WIRRDLRLHDHPALEYALQKGR-VIPVFILDDRLLQ--------KEASKRKQFLFSGLRQ 57
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
L ++L RG L+IR G+P + L + GA + A ++ + + + L
Sbjct: 58 LDEDLRKRGSQLIIRRGEPLAELTRLIQETGAEEIVALEDYSPYARRRDSHIARELP--- 114
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA-KCTVRGCIRI 264
L L G T+Y + S V+T F ++ +A + +
Sbjct: 115 --------------LHLFAGETVYPPSLVLKPDGSPYTVFTPFSRAWKALPFASPSVVSL 160
Query: 265 PSSFGPPPSVVD-WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVY 323
P F P+V D S+P+ E + L F GE AL R+ + + Y
Sbjct: 161 PERF---PAVPDKLVSLPIPEAIFLQD--------FPPGELEALRRLENFL--SGPAREY 207
Query: 324 KETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST----YWVLFELMW 379
+ RN + P S SP+ G +SPR+ +V+ + + D W L EL+W
Sbjct: 208 ADGRNRLDQPGTSF-LSPYFRFGMLSPRWAVFQVRKMIQITSSPDEKRGYEAW-LNELIW 265
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
R+++ I Y + L P +W ++W++G TGYP++DA M++L TG+
Sbjct: 266 REFYISILYHYPHVLAMAFNPALRAIEWRDAPSELQAWKEGKTGYPVVDAAMRQLKATGW 325
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RY 498
M NR R I SFL +D+ I+W+ G +WF L+D DP +N G W + AGVG D R
Sbjct: 326 MHNRARMIVASFLTKDLLINWQEGEQWFMQNLVDGDPAANNGGWQWTAGVGTDAAPYFRI 385
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
F+ Q+ +D +G Y+ W+P+L ++P E
Sbjct: 386 FNPVLQSAKFDPQGRYIKTWVPELTSVPTE 415
>gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
Length = 484
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 139/451 (30%), Positives = 206/451 (45%), Gaps = 44/451 (9%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VW RNDLR+ DN AL A ++ + VY +T P G +L +
Sbjct: 21 ALVWLRNDLRINDNPALDAAAETGGHITAVYV-----HETVAEIRAP--GCAVRWWLDQS 73
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +RK L +RG+ LLI G P +I+P L ++ + E + ++ L+
Sbjct: 74 LEAIRKQLADRGIELLIETGDPRDILPQLIAKLAVTELFWNRRYAPAEREFDANLKAQLK 133
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ S T+ P L+ + D P+ V+T F K++ R
Sbjct: 134 E------SGTGVTSFPGNLLLEPWELKTASDTPYQ------VFTPFAKALRHHHIPR--- 178
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKV-SKGMRFVG----GESAALGRVNEYFWKK 317
P S W P Q +SP V + +F G GE AA + + +
Sbjct: 179 --------PLSRRQWDIKP--TQETCYSPNVPAWAKKFDGLWNIGEDAARDCLTRFL--E 226
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYI-YEEVKSYERERVANDSTYWVLFE 376
+ L Y E R+ + G D +++ SP L G IS R Y + + A L E
Sbjct: 227 NTLSTYTEDRD-VPGIDGTSRLSPHLRFGEISARQAWYATLAFMDEHHSARAGGEKFLSE 285
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
L+WRD F + L + + L W D+ FE+WR G TG+P+IDA M++L
Sbjct: 286 LIWRD-FNYHQLYHRRDISRHDMRDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLW 344
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R + SFL +++ IDWR G EWF L+D D SN G+W + AG G D
Sbjct: 345 ATGWMHNRVRMLVASFLTKNLLIDWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAP 404
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R F+ Q + +D EG+YV +W+P+L L
Sbjct: 405 YFRVFNPILQGEKFDAEGQYVRHWVPELSGL 435
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 129/451 (28%), Positives = 210/451 (46%), Gaps = 41/451 (9%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFRNDLR+ DN AL A S ++ +Y +D + G + G+ +L
Sbjct: 5 AVVWFRNDLRLADNPALTAAARSGAPIIALYVLDDESA------GEWRMGSASRWWLHHS 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L +L G+ L +R G+ E ++ ++ GA AVY + + + ++ L+
Sbjct: 59 LTALAHDLARLGVTLTLRRGRAEFVLENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQLR 118
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ +S + G+ ++ + V+T F ++ A +
Sbjct: 119 ARGVMVESFN------------GSLLFEPGGLRNKQGEPFRVFTPFWRACLAAEAPDAPL 166
Query: 263 RIPSSF--GPPPS---VVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
P PPP+ + DW +P P + G+R + GE AAL R+ E+
Sbjct: 167 PAPKKLTAAPPPASDALADWRLLPT-------KPDWAGGLRETWRAGEHAALERLAEF-- 217
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
K ++ YK R+ + + ++ SP L G +SPR I+ E+ A D+ L
Sbjct: 218 AKKRVRDYKIDRD-FMAREGVSRMSPHLHFGEVSPRRIWAEITE-----AAGDAGAAYLR 271
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
E+ WR++ + + R ++ W +D E+WR G TGYPL+DA M+EL
Sbjct: 272 EIGWREFCHHLLVANPQMPERALDERFRDFPWREDAAALEAWRRGQTGYPLVDAAMRELW 331
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
+TG M NR R +A SFLV+ + I W+ G WF L+D D +N G W + AG G D
Sbjct: 332 ITGNMHNRARMVAASFLVKHLLIPWQEGERWFWDTLVDADLANNSGGWQWVAGCGADAAP 391
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R F+ Q + +D EG+Y+ ++P+L L
Sbjct: 392 YFRVFNPVLQGEKFDPEGDYLRRYVPELARL 422
>gi|295840351|ref|ZP_06827284.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
gi|295827937|gb|EFG65724.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
Length = 455
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 129/446 (28%), Positives = 213/446 (47%), Gaps = 35/446 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+IV + +DLR+ D+ L A +E V+P++ DP + + T RA FL +
Sbjct: 3 ASIVLYTSDLRLHDHPPLRAATREAEEVVPLFVRDPGIEKAGF------TAPNRAAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CLA L L RG L++R G P I+ L S GA V+ + +R L
Sbjct: 57 CLAGLDAGLRERGGRLVVRAGDPVRIVRELVGSTGAERVHVAAGLSAYARGRADRLRTAL 116
Query: 202 QQVVLSSQSNDKSTNHPQL-KLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ ++ Q +L+ G DH + V+T + + A+ +R
Sbjct: 117 EGTGAELVEHEAVVTALQPGELVPGGK---------DHFA---VFTPYHRQWSAQ-PLRE 163
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ P + PS V +VP +E SP +++G GE+A GR W++D +
Sbjct: 164 PLAAPRAL-TVPSGVRSDAVPRRADVEGVSPGLAEG-----GEAA--GRALLAAWRRDGV 215
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
Y+E +++ G D +++ SP+L G++S V++ + +L WR
Sbjct: 216 SRYEEMHDDLAG-DGTSRLSPYLHFGALSAAECVHRVRAAG-----GAGADAFVRQLCWR 269
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQD-QKLFESWRDGCTGYPLIDANMKELSMTGF 439
D+ + + PR ++ + ++ +WR+G TGYP++DA M++L+ G+
Sbjct: 270 DFHHQVLAARPAAAHKDYRPRGDHWRTGRSAEREAAAWREGRTGYPVVDAAMRQLAHEGW 329
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
M NRGR +A SFL + + +DWR+GA F L D D +N NW + AG G D R R
Sbjct: 330 MHNRGRLLAASFLTKTLYLDWRLGAAHFLDLLADGDLANNQMNWQWVAGTGTDTRPGRVL 389
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+ QA+ YD EG+YV W+P+L+ +
Sbjct: 390 NPLTQARKYDPEGDYVRRWVPELRGI 415
>gi|291303346|ref|YP_003514624.1| deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
44728]
gi|290572566|gb|ADD45531.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
44728]
Length = 436
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 201/442 (45%), Gaps = 54/442 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+V F DLR+ DN AL A ++ V+P+Y D P + +FL+E L
Sbjct: 41 VVLFTRDLRIRDNPALALASRHADTVVPLYVAD----------DSPPLPPNQRRFLVESL 90
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
DLR++L G +LL+R G P E L + + ++ R +R+ L +
Sbjct: 91 TDLRESLRRLGGDLLVRRGDPVEQTLKLCRLLATDGIGMAEDYGP----AARRLRQRLAE 146
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + L+L G T+ + P + V+T + +S A R
Sbjct: 147 AAEAERVG--------LRLFPGVTIVEPGAVRPTTGADHYKVFTPYLRSWSA-TPWRPEH 197
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
P + P V +I +E S V GGE+A L R + + D
Sbjct: 198 EAPQAIRLPADVTGDDPASVIGPVEGGSSDVVD-----GGETAGLRRWDSWI---DREPD 249
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
Y ++ L D +T+ S +L G +SP + + ++ E ++ +L WRD+
Sbjct: 250 YPAIHDD-LAADDTTRLSGYLRFGCVSPLVVAADPRTPEA----------LVRQLCWRDF 298
Query: 383 FR-----FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+ F L N + G R W D+ +W+DG TG PL+DA M++L
Sbjct: 299 YHQVLHGFPRLATDN---YRPGARD---AWVDDEPALRAWQDGETGVPLVDAGMRQLRTQ 352
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+M NR R +A S+L +D+GIDWR GA WF+ L+D D +NYGNW + AG GND R R
Sbjct: 353 GWMHNRARMVAASYLTKDLGIDWRHGAAWFDRWLVDADVANNYGNWQWTAGTGNDSRPYR 412
Query: 498 YFSIPKQAQNYDREGEYVAYWL 519
F+ +QAQ YD EY WL
Sbjct: 413 RFNPARQAQRYDPRHEYRDRWL 434
>gi|424870229|ref|ZP_18293891.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393165930|gb|EJC65977.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 483
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 128/463 (27%), Positives = 212/463 (45%), Gaps = 44/463 (9%)
Query: 75 LKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
+ ++ I+WFR DLR+ DN+AL A S ++P+Y +P + T GA
Sbjct: 1 MAKDAAKPVILWFRKDLRLDDNQALTAAHRSGRPIIPLYISEPETAGTG------PLGAA 54
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
+A +L L L ++L R L++ G+ E++ K GA AV+ + +++
Sbjct: 55 QAWWLHHSLKALDRSLRKRQGRLVLASGEALEVLCVFIKESGADAVFWNRRYDPSGTSID 114
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
++ L++ + +S H +L+ G + P+ YT F +++E
Sbjct: 115 IRIKHQLEKQAIEVRSFGGQLLHEPSRLMTG------NGTPYR------AYTPFWRALEG 162
Query: 255 ------KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALG 308
+R+ S F ++ W +P + + GE
Sbjct: 163 GGEPEPPLEAPAKLRLTSQFPKSETLESWKLLPAKPDWAGDFADL-----WTPGEEGGHE 217
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND 368
++ + +D L YKE R+ P S SP LA G ISP I++ + + A D
Sbjct: 218 KLRAFV--EDALDGYKENRDYPARPTTSM-LSPHLALGEISPARIWDATRGLSQRVPAAD 274
Query: 369 STYWVLFELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTG 423
++ E+ WR++ F F L N G ++W D F++WR G TG
Sbjct: 275 IVHFRK-EIAWREFSYHLLFHFPRLASANWNDRFDG-----FEWRNDSGDFQAWRRGMTG 328
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YP++DA M++L G+M NR R I SFL++D+ IDWR G WF L+D DP +N +W
Sbjct: 329 YPIVDAGMRQLWRHGWMHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASW 388
Query: 484 TYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ AG G D R F+ Q + +D +G+YV ++P+L+ L
Sbjct: 389 QWVAGSGADASPFFRIFNPVLQGEKFDPDGDYVRTYVPELREL 431
>gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii
DSM 6242]
gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM
6242]
Length = 467
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 137/457 (29%), Positives = 218/457 (47%), Gaps = 48/457 (10%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRA---QFL 139
++ FR D+RV DN ALL A D S++V+P + +DPR PK A + QFL
Sbjct: 8 SLFVFRRDMRVDDNSALLAALDMSDVVIPCFILDPRLCD-------PKGKAFNSNALQFL 60
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+E L DL+ L L + G PE +I L ++ AV+ + +++
Sbjct: 61 LESLYDLKGQLEKVNGRLYLFSGLPEGVIGQLLENLEIDAVFVNHDYTPFS------IKR 114
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF-RKSIEAKCTV 258
++Q ++S DK + Q ++ I + V+T F R++ + V
Sbjct: 115 DMQ---IASICTDKGVDMLQFH---DCLLHEPGSIRTKKGTPYKVFTQFFREASKRDVAV 168
Query: 259 RGCIRIPSSFGPPPSV--VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
S F V VD GS L+ P+ ++ + FV G GR N
Sbjct: 169 PSMFSGGSFFTGDCGVDEVDEGSF-----LKRSLPERNEQI-FVHG-----GRANGLSVL 217
Query: 317 KDLLK-VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ L + V +T ++ +T S G+IS R Y V + + T ++
Sbjct: 218 QSLSQFVNYDTERDLPSVKGTTGLSAHNKLGTISIREFYYSVI----DELGRGHT--LIN 271
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL WRD+F IS ++ + H + W D+ F++W G TG+P++DA M+EL+
Sbjct: 272 ELYWRDFFTQISFEFPDVFKHAFKKKFDHLSWDNDRIFFDAWCLGKTGFPIVDAGMRELN 331
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R I SFLV+D+ IDW+ G +F + L+DYDPC N GNW + A G D +
Sbjct: 332 TTGYMHNRVRMIVASFLVKDLHIDWKRGERYFASKLVDYDPCVNNGNWQWAASTGADSQP 391
Query: 496 DRYFSIPK---QAQNYDREGEYVAYWLPQLKALPKER 529
YF I Q + +D++ +Y+ W+P+L+ + +R
Sbjct: 392 --YFRIFNPWLQQKKFDKDCKYIKKWIPELEDIEPQR 426
>gi|206891163|ref|YP_002248985.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206743101|gb|ACI22158.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 437
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 127/445 (28%), Positives = 208/445 (46%), Gaps = 46/445 (10%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
I WF+ DLR+ DN AL +A +S V+PV+ P + K+ R FLIE
Sbjct: 5 VIFWFKRDLRIDDNRALFEACQNSFEVIPVFIFIPSILERF------KSYDRRTGFLIES 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK-NL 201
L L K + +G L H +P+ + +L + +G A++ + VE V+K L
Sbjct: 59 LKHLSKEIEKKGGRLYCFHDEPQRVFLTLIRKYGIQAIFTNRAFSWSGEEVEETVKKLCL 118
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ V ND + +D IP+ +Y+ F + E +
Sbjct: 119 NEGVDFVTFND-------------NFLAEIDKIPYRK-----IYSKFYRYWEQNLRLTE- 159
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ P P + P ++++ + ++S V + R+ E+ + +
Sbjct: 160 VSSPERINTPKL-----NEP---EIDIVASEISHEKNIVWKPDFGIRRLKEFDFNR---- 207
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
Y+E R+ L D ++K SP++ G IS R IY E D + + EL WR+
Sbjct: 208 -YEELRDR-LDIDGTSKLSPYIRFGLISLRKIYRVAS----EAAGQDCQF--IKELAWRE 259
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
++ I L + ++ + +W D+KL++++ + TGYPLIDA + +L +M
Sbjct: 260 FWYHIKLNFPQFKNLEFQEKRRKIRWQNDEKLYKAFIEAKTGYPLIDAAIIQLKQENWMH 319
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NR R I SFL +D+ IDWR G +F L+DYD N GNW + A VG DP+ R F+
Sbjct: 320 NRARMIVASFLTKDLMIDWRWGESFFMEHLIDYDEVVNVGNWQWNASVGPDPKPLRIFNP 379
Query: 502 PKQAQNYDREGEYVAYWLPQLKALP 526
QA+ +D + +++ +LP LK LP
Sbjct: 380 IIQAKKFDPDCKFIKKYLPSLKKLP 404
>gi|404317161|ref|ZP_10965094.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi CTS-325]
Length = 468
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 206/451 (45%), Gaps = 44/451 (9%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VW RNDLR+ DN AL A ++ + VY +T P GA R +L +
Sbjct: 5 ALVWLRNDLRINDNPALDAAAETGGHITAVYV-----HETVAEIRAPG-GAAR-WWLDQS 57
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +RK L +RG+ LLI G P +I+P L ++ + E + ++ L+
Sbjct: 58 LEAIRKQLADRGIELLIETGDPRDILPQLIAKLAVTELFWNRRYAPAEREFDAKLKSQLK 117
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ S T+ P L+ + D P+ V+T F K++ R
Sbjct: 118 E------SGTGVTSFPGNLLLEPWELKTASDTPYQ------VFTPFAKALRLHNVPR--- 162
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK-GMRFVG----GESAALGRVNEYFWKK 317
P S W P Q ++P V +F G GE AA + + +
Sbjct: 163 --------PLSRRQWNVKP--TQEAHYAPNVPAWAEKFDGLWNIGEDAARDCLPRFL--E 210
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYI-YEEVKSYERERVANDSTYWVLFE 376
L Y E R+ + G D +++ SP L G IS R Y + + A L E
Sbjct: 211 STLSTYTEDRD-VPGIDGTSRLSPHLRFGEISARQAWYATLAFMDEHHSARAGGEKFLSE 269
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
L+WRD F + L + + L W D+ FE+WR G TG+P+IDA M++L
Sbjct: 270 LIWRD-FNYHQLYHRRDISRHDMRDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLW 328
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R + SFL +++ IDWR G EWF L+D D SN G+W + AG G D
Sbjct: 329 ATGWMHNRVRMLVASFLTKNLLIDWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAP 388
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R F+ Q + +D EG+YV +W+P+L L
Sbjct: 389 YFRVFNPILQGEKFDAEGQYVRHWVPELSGL 419
>gi|291443506|ref|ZP_06582896.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
15998]
gi|291346453|gb|EFE73357.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
15998]
Length = 456
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 209/441 (47%), Gaps = 33/441 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
VA+V F +DLR+ D+ L A ++ V+P++ D + GF R FL +
Sbjct: 4 VAVVLFTSDLRLHDHPVLRAALRDADEVVPLFVRD----DAVHRAGFDAPN--RLAFLAD 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CLADL L +RG L++R G + + + GA +V+ E +R+ L
Sbjct: 58 CLADLDTGLRDRGGRLIVRRGGTAREVKRVVEQTGADSVHIAAGVSGYAAQREERIREAL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ +D T + +P V+T + + EA+ VRG
Sbjct: 118 AGTGCELRVHDAVV----------TALAPGRVVPTGGKDHFAVFTPYFRRWEAEG-VRGT 166
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ P + P V ++P + ++ SP +++G GE A GR W +
Sbjct: 167 LAAPRTVRVPDGVSG-DALPDRDAVKGVSPGLARG-----GEEA--GRKLVTSWLHGPMA 218
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
Y++ +++ G D +++ SP L G++S E+ + RE+ +V +L WRD
Sbjct: 219 AYEDGHDDLAG-DATSRLSPHLHFGTVSA----AELANRAREKGGPGGEAFVR-QLAWRD 272
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+ + ++ + PR +W D+ E+W+ G TGYPL+DA M++L+ G+M
Sbjct: 273 FHHQVLAARPDASWSDYRPR--HDRWRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMH 330
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NRGR + SFL + + +DWR+GA F L+D D +N NW + AG G D R +R +
Sbjct: 331 NRGRMLTASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNP 390
Query: 502 PKQAQNYDREGEYVAYWLPQL 522
Q + +D +G YV W+P+L
Sbjct: 391 VIQGKRFDPDGAYVRRWVPEL 411
>gi|414167272|ref|ZP_11423501.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
gi|410891089|gb|EKS38887.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
Length = 488
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 136/458 (29%), Positives = 219/458 (47%), Gaps = 46/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR+DLR+ D+ AL A ++ ++ +Y +D + G G+ +L + L
Sbjct: 10 IVWFRDDLRLSDHPALHAAAETDAPLVLLYVLDEESTSLRPPRGR-AIGSASRWWLAQSL 68
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L+ +L RG L++R G +I LA+ A +V+ + + VER V L++
Sbjct: 69 RSLQASLAARGQTLVLRSGAAARVISDLAQDIEAASVHWIESDVPSQSAVERDVTAALKE 128
Query: 204 VVLSSQS--NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + ++ D L+ G + V+T F K + +
Sbjct: 129 IGVQARGFPGDLLVKPASLRNKEGRGLR--------------VFTPFWKRVLSLGDPPQP 174
Query: 262 IRIPSSFGPPPSVV--DWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKK 317
+ +P P P+V D S LE P + G+R + GESAA R++++ +
Sbjct: 175 LPVPKKLKPGPAVASDDLASW----NLEPKHPDWAGGLRDTWTPGESAAQTRLHDFL--E 228
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYWVLF 375
+K Y R+ D +++ SP L G ISPR ++ + ++ +A+D L
Sbjct: 229 TGIKGYATLRDRP-DRDGTSRLSPHLRFGEISPRQVWHAANFAAAQKPDIASDVGK-FLS 286
Query: 376 ELMWRDYFRFISLKYGNSLFHLG--GPRKLE-----YKWSQDQKLFESWRDGCTGYPLID 428
EL WR++ R + LF L + L+ + W +D K +W+ G TGYP++D
Sbjct: 287 ELGWREFSRHL-------LFDLPDLAEKNLQSSFDAFPWRRDAKALRAWQRGRTGYPIVD 339
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M+EL TG M NR R + SFLV+ + IDWR G +WF L+D DP SN +W + AG
Sbjct: 340 AGMRELWHTGVMHNRVRMVVASFLVKHLLIDWRHGEKWFWDTLVDADPGSNPASWQWVAG 399
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G D R F+ Q + +D +G YV+ W+P+L L
Sbjct: 400 SGADAAPYFRVFNPVLQGEKFDPDGAYVSRWVPELARL 437
>gi|408785938|ref|ZP_11197678.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
gi|408488127|gb|EKJ96441.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
Length = 479
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 139/461 (30%), Positives = 210/461 (45%), Gaps = 55/461 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL-RAQ--FLI 140
IVWFR DLR+ DN ALL A D V+PVY + GAL RAQ +L
Sbjct: 9 IVWFRKDLRLSDNLALLAAADHKGPVIPVYIREK------------CCGALGRAQEWWLH 56
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
L L L G L++ G EE++ L GA V+ + E ++ ++ +++
Sbjct: 57 HSLTALHAALKKTGSRLVLASGDAEEVLRRLIAETGADTVFWNRRYDPEGISTDKTLKRA 116
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVR 259
L+ L+ +S H KL S P VYT F +++E
Sbjct: 117 LRDEGLTVRSFSGHLLHEPSKLQ-------------TKSGGPYRVYTPFWRALEGGEEPH 163
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRVNEYFW 315
P P +W +++ +L + F GE A +++++
Sbjct: 164 APADAPDRLNTP---RNWPRSETLDEWQLLPKRPDWAREFSDIWTPGEDGAREKLSDFI- 219
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
LK Y+E R+ + D +++ SP LA G ISP ++ K R +ND + +
Sbjct: 220 -DGALKGYEEGRD-LPAKDATSRLSPHLALGEISPATVWHATKGLSRHIASNDISRFRK- 276
Query: 376 ELMWRDY-----FRFISL--KYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
E++WR++ F F L K N F + W D K F +W G TGYP++D
Sbjct: 277 EIVWREFCYHLLFHFPELDEKNWNDSFD-------AFSWRDDDKSFTAWTRGMTGYPIVD 329
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L G M NR R I SFL++ + IDWR G +WF L+D DP SN NW + AG
Sbjct: 330 AGMRQLWRHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAG 389
Query: 489 VGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D R F+ Q + +D +G+YV ++P+L L ++
Sbjct: 390 SGADASPFFRIFNPILQGEKFDGDGDYVRRFVPELARLERK 430
>gi|410944062|ref|ZP_11375803.1| deoxyribodipyrimidine photolyase [Gluconobacter frateurii NBRC
101659]
Length = 483
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 133/460 (28%), Positives = 224/460 (48%), Gaps = 56/460 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLR+ D+ AL A + + ++ +Y +D + + G GA R +L L
Sbjct: 14 IVWFREDLRLSDHLALQAALATGQPLICLYVLDDE-TPALHSLG----GASR-WWLHGAL 67
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR+ L LL+ G E+++P LA+ GA +VY +E R+ ++
Sbjct: 68 ADLRRTLGRHQGTLLMLKGSAEKLVPQLARETGAQSVYWHHRLHQKE-------REQDER 120
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++ ++ + WGT + + V+T F K+ +A+
Sbjct: 121 IAIALKTQGAAAEGS-----WGTVLLDPAQVQTKEGRFYQVFTTFWKAFQAQ-------D 168
Query: 264 IPSSFGPPPSVVDWG-SVPLIEQLELHS-------PKVSKGMR--FVGGESAALGRVNEY 313
+P G P ++ + S L+ Q L P + G+R + GE A + ++
Sbjct: 169 VPEPLGSPANLSFYPLSDSLLAQYWLDESTLLPTHPDWAAGLRASWEPGEKEAHEHLEDF 228
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
+ D + Y + R+E L + +++ SP+LASG+ISPR I+ + +++ ++
Sbjct: 229 V-RHDCSR-YGKGRDE-LSREGTSRLSPYLASGAISPRQIW---AALQKKGAHDEGARIF 282
Query: 374 LFELMWRDYFRFISLKYGNSLFHLG-------GPRKLEYKWSQDQKLFESWRDGCTGYPL 426
L E+ WR++ ++ +LFH G + + W + +K +W+ G TG P+
Sbjct: 283 LSEIGWREFAKY-------TLFHQARLPDTSLGQKFEKMPWRKSEKDLLAWQQGRTGVPI 335
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L TG+M NR R I SFL + + IDWR G WF L+D D SN NW +
Sbjct: 336 VDAGMRQLWKTGWMHNRARMIVGSFLTKHLLIDWREGEAWFRDTLVDADWASNAMNWQWV 395
Query: 487 AGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
AG G D R F+ +Q +D +G+Y+ W+P+LK L
Sbjct: 396 AGTGIDASPFFRIFNPTRQGVKFDPDGDYIRQWVPELKKL 435
>gi|365887145|ref|ZP_09426019.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
gi|365337300|emb|CCD98550.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
Length = 481
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 146/483 (30%), Positives = 211/483 (43%), Gaps = 42/483 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR LR+ D+ AL A S V+ Y D S G GA +L + L
Sbjct: 7 IVWFRESLRLSDHPALYAAAKSGGPVVCSYIYDQESS------GLRHLGAATRWWLAQSL 60
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L+ +L G +L+IR G+ +++ LA+ A AVY + V V L +
Sbjct: 61 RALQADLKTLGADLIIRRGRAAQVLVELARETRASAVYWNDVAQAGPRRVASSVEAGLGE 120
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++S+ P L+ TM D P V+T F K + A +
Sbjct: 121 IGVASRV------FPDDLLVDPATMSGKD------GRGPRVFTPFWKRVLALGDPPKPLP 168
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKKDLLK 321
P P+VV L+ LE P + G+R + GE AA R+ + + +
Sbjct: 169 TPGRLAAVPNVVSLTVDELM--LEPTRPDWAGGLRATWQAGERAAQQRLGSFL--ESAVG 224
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA-NDSTYWVLFELMWR 380
Y R+ D +++ SP L G ISPR I+ + ER A L E+ WR
Sbjct: 225 SYAGDRDRP-DIDATSRLSPHLRFGEISPRQIWYAARFAAEERPALAKGIDKFLSEIGWR 283
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
++ R + + P + W+QD +W+ G TGYP++DA M+EL TG M
Sbjct: 284 EFSRHLLYNNPDLATRNLQPSFDAFPWTQDDAALAAWQRGRTGYPIVDAGMRELWHTGSM 343
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYF 499
NR R +A S LV+ + +DWR G +WF L+D D SN +W + AG G D R F
Sbjct: 344 HNRVRMVAASLLVKHLLLDWRQGEQWFWDTLVDADAGSNPASWQWVAGSGADAAPYFRVF 403
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------------GGSYIEQIVSL 544
+ Q + +D G YV W+P+L LP + P G SY IV
Sbjct: 404 NPVLQGEKFDANGSYVRRWVPELARLPAGLIHQPWAAKPLELAEAGVTLGRSYPAPIVEH 463
Query: 545 KHG 547
KHG
Sbjct: 464 KHG 466
>gi|417860350|ref|ZP_12505406.1| DNA photolyase [Agrobacterium tumefaciens F2]
gi|338823414|gb|EGP57382.1| DNA photolyase [Agrobacterium tumefaciens F2]
Length = 479
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 209/459 (45%), Gaps = 51/459 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLR+ DN ALL A + V+P+Y + G + +L L
Sbjct: 9 IVWFRKDLRLSDNLALLAAVEHGGPVIPLYIQEKSSG---------PLGGAQEWWLHHSL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L L G LL+R G EE + + GA ++ + + ++ +++ L
Sbjct: 60 ASLTVALEETGSRLLLRSGDAEETLRHVISETGADTIFWNRRYDPAGMATDKALKQALSD 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
L+ +S G ++ + VYT F +++E
Sbjct: 120 DGLTVRS------------FAGHLLHEPSRVQTKSGGPYRVYTPFWRALEGGEEPHAPAD 167
Query: 264 IPSSFGPPPS------VVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
P S P + + DW +P+ ++ + GE+AA +++++
Sbjct: 168 APKSLKSPETWPKSQKLDDWKLLPVKPDWARDFSEI-----WTPGENAAREKLDDFI--D 220
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
LK Y+E R+ D ++ +P LA G ISP ++ K R +ND + + EL
Sbjct: 221 GALKGYEEGRD-FPAKDATSMLAPHLALGEISPAAVWHATKGLSRHIASNDISRFRK-EL 278
Query: 378 MWRDY-----FRFISL--KYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
+WR++ F F L K N F G W QD+K F++W G TGYP++DA
Sbjct: 279 VWREFCYHLLFHFPKLDEKNWNESFDAFG-------WRQDEKSFKAWTRGMTGYPIVDAG 331
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L G M NR R I SFL++ + IDWR G +WF L+D DP SN NW + AG G
Sbjct: 332 MRQLWKHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSG 391
Query: 491 NDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
D R F+ Q + +D +G+YV ++P+L+ L ++
Sbjct: 392 ADASPFFRIFNPILQGEKFDGDGDYVRRFVPELEKLDRK 430
>gi|406658770|ref|ZP_11066910.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
gi|405578985|gb|EKB53099.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
Length = 470
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 132/464 (28%), Positives = 218/464 (46%), Gaps = 69/464 (14%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
VA++WFR DLR+ DN+AL A DS +L V+ ++P+ + + I+
Sbjct: 2 VAVIWFRRDLRIQDNKALKHAIDSGGPLLAVFHLNPKQLR--------DVATVSQSAFIQ 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE----RLV 197
L R+ L +G+ L H ++ + + C E L V
Sbjct: 54 SLQHFRRTLDEKGIFL--------------------HVIFGELQYCFEHLQQALPDWTDV 93
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLI----WGTTMYHLDDIPFDHSSLP-DVYT-HFRKS 251
N + + ++ + + K I + H + +SLP V+T +++K
Sbjct: 94 YFNYDDAGFGRKRDQEAAHFFREKGIAIHAYQDHYLHGSQEVINQASLPYKVFTPYYKKW 153
Query: 252 IEAKCTVRGCI---RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALG 308
++ I ++ F P VD L L H P GE AAL
Sbjct: 154 LQLPKETPIVIDYSQVDWLFVPNAKTVDSKLNTLFRPLPYHKP----------GEEAALE 203
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDY--STKFSPWLASGSISPRYIYEEVKSYERERVA 366
+++ + ++ L+ Y +R+ P+Y +++ S +L +G I+ R +Y + + A
Sbjct: 204 QLHLFI--EEGLEAYDVSRDY---PEYDGTSRLSVYLRTGEINIRTVYAAISKAK----A 254
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTG 423
+ + EL+WR+++ I Y N P + ++ +W DQ LFE W+ G TG
Sbjct: 255 SKGKAVFIKELVWREFYHMI---YVNHPHQKQEPLQAQFAAIEWENDQALFEQWKAGTTG 311
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YP++DA M++LS TG+M NR R I SFLV+D+ IDWR G E+F+ L+DYD SN G W
Sbjct: 312 YPMVDAAMRQLSQTGWMHNRLRMIVASFLVKDLLIDWRWGEEYFQEALMDYDSASNIGGW 371
Query: 484 TYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+ A G D R F+ QA+ +D +G ++ ++PQL+ALP
Sbjct: 372 QWAASTGTDAVPYFRIFNPTTQAKRFDPKGHFIKTYVPQLEALP 415
>gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
8102]
Length = 477
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 132/474 (27%), Positives = 223/474 (47%), Gaps = 49/474 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A S V VY +DP+ + H P A R FLIE L
Sbjct: 7 LFWHRRDLRLTDNLGLAAAAAISPAVTGVYVLDPQVISPSEHL-LPMAPA-RLWFLIESL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L++ + G LL+ G P +++P LA+ A AV + +VE R+ +Q
Sbjct: 65 IELQQRWRDAGSRLLVVEGDPVQLLPQLAERIAAEAVVWNR-------DVEPYARERDRQ 117
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V Q++ + ++ + W + + + VY F ++ + + +
Sbjct: 118 VAQRLQADGR-----KVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVQAKQPVT 172
Query: 264 IPSSFGP---PPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+P+ G P+ V G PL+ + + H K ++ GE+AA+ ++ + L
Sbjct: 173 VPAPAGLVDLDPAAVPSGE-PLMARRDSHGFKGTELCPCRPGEAAAMQQLTSFC--DGAL 229
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF---EL 377
Y+ RN G ++ S L+ G++SPR + + + + + + + EL
Sbjct: 230 FGYEPDRN-FPGVVGTSYLSAALSVGTLSPRQAWSAAQEAREQARSEEQLHAIAVWEQEL 288
Query: 378 MWRDYFRFISLKYGNSLFHL----GGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDAN 430
WR++ Y +LFH GP + +++ W ++ F+ WR+G TG P+IDA
Sbjct: 289 CWREF-------YQQALFHFPELSDGPYREQWRRFPWENNEDWFDFWREGQTGMPIIDAA 341
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I S+LV+D+ DWR G F +D D +N G W + A G
Sbjct: 342 MRQLNQTGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSG 401
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL-----------PKERRNFP 533
DP+ R F+ QA +D G+Y+ W+P+L+ + ERR++P
Sbjct: 402 MDPKPLRIFNPATQASKFDAAGDYIRQWVPELRHVNTKDLLSGEIGALERRDYP 455
>gi|424910085|ref|ZP_18333462.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846116|gb|EJA98638.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 479
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 139/461 (30%), Positives = 210/461 (45%), Gaps = 55/461 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL-RAQ--FLI 140
IVWFR DLR+ DN ALL A D V+PVY + GAL RAQ +L
Sbjct: 9 IVWFRKDLRLSDNLALLAAADHKGPVIPVYIREK------------CCGALGRAQKWWLH 56
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
L L L G L++ G EE++ L GA V+ + E ++ ++ +++
Sbjct: 57 HSLTALHAALKKTGSRLVLASGDAEEVLRRLIAETGADTVFWNRRYDPEGISTDKTLKRA 116
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVR 259
L+ L+ +S H KL S P VYT F +++E
Sbjct: 117 LRDKGLTVRSFSGHLLHEPSKLQ-------------TKSGGPYRVYTPFWRALEGGEEPH 163
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRVNEYFW 315
P P +W +++ +L + F GE A +++++
Sbjct: 164 APADAPDRLNAP---RNWPRSETLDEWQLLPKRPDWAREFSDIWTPGEDGAREKLSDFI- 219
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
LK Y+E R+ + D +++ SP LA G ISP ++ K R +ND + +
Sbjct: 220 -DGALKGYEEGRD-LPAKDATSRLSPHLALGEISPATVWHATKGLSRHIASNDISRFRK- 276
Query: 376 ELMWRDY-----FRFISL--KYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
E++WR++ F F L K N F + W D K F +W G TGYP++D
Sbjct: 277 EIVWREFCYHLLFHFPELDEKNWNDSFD-------AFNWRDDDKSFTAWTRGMTGYPIVD 329
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L G M NR R I SFL++ + IDWR G +WF L+D DP SN NW + AG
Sbjct: 330 AGMRQLWRHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAG 389
Query: 489 VGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D R F+ Q + +D +G+YV ++P+L L ++
Sbjct: 390 SGADASPFFRIFNPILQNEKFDGDGDYVRRFVPELARLERK 430
>gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2]
gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris HaA2]
Length = 487
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 144/488 (29%), Positives = 217/488 (44%), Gaps = 48/488 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR+DLR+ D+ AL A S ++ +Y D + Q P GA R +L + L
Sbjct: 10 IVWFRDDLRLSDHPALHAAAASGSPLICIYVHDEQSPQLRPPQARPIGGAAR-WWLAQSL 68
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L L RG L++R G I+ LA+ A AV+ + E+ R + +L +
Sbjct: 69 RALAAELEQRGARLILRRGPAAAIVGELARQVDAAAVHWNEI----EIAPHRAIADDLAE 124
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ S S HP G + +I V+T F + + +
Sbjct: 125 TL--SMSGIDHHRHP------GDLLVAPSEIRTKDGRGLRVFTPFWRRVLGLGDPPKPLP 176
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKKDLLK 321
P+ P + P QLE +P + G+R + GE AA + + D L
Sbjct: 177 APAMLRAGPDIA--SDDPATWQLEPTAPDWAGGLRASWTPGERAAHDLLTAFL---DRLP 231
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK-SYERERVANDSTYWVLFELMWR 380
Y R+ D ++ SP L G ISPR ++ + + + L EL WR
Sbjct: 232 GYAADRDRP-DRDATSLLSPHLRFGEISPRQLWYAARFAAAKRPAIAADIDKFLSELGWR 290
Query: 381 DYFRFISLKYGNSLFHLGGPRKLE-----YKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
++ R + + + R L+ + W++D +W+ G TGYP++DA M++L
Sbjct: 291 EFCRHLLHDHPDL-----AERNLQSAFDAFPWTRDDAALAAWQRGRTGYPIVDAGMRQLW 345
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG M NR R + SFLV+ + IDWR+G EWF L+D DP SN GNW + AG G D
Sbjct: 346 HTGVMHNRIRMVVASFLVKHLLIDWRLGEEWFWDTLVDADPGSNPGNWQWVAGSGADAAP 405
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------------GGSYIE 539
R F+ Q + +D G+YV W+P++ ALP + + P GG+Y
Sbjct: 406 YFRVFNPILQGEKFDPAGDYVRRWVPEIAALPNKFIHQPWTATLLERAAAGVALGGNYPA 465
Query: 540 QIVSLKHG 547
IV K G
Sbjct: 466 PIVDHKVG 473
>gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
Length = 483
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 140/466 (30%), Positives = 211/466 (45%), Gaps = 48/466 (10%)
Query: 75 LKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
L G IVWFR+DLR+ D+ AL A S VL VY +D S G GA
Sbjct: 2 LTTAGSRPVIVWFRDDLRLADHPALHAAAQSGAPVLCVYVLD-EVSDEVRALG----GAA 56
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEE--LN 192
R +L + L L L G L++R G ++ LA+ A AV+ + + +
Sbjct: 57 R-WWLAQSLRSLEAELRAAGALLILRRGPAAAVLAELAQQSDAAAVHWNEIEIAPHRAVA 115
Query: 193 VERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI 252
+ + S D ++ G M V+T F + +
Sbjct: 116 DALADALTMAGIAYHRHSGDTLVAPSAIRSKDGRGMR--------------VFTPFWRRV 161
Query: 253 EAKCTVRGCIRIPSSFGPPPSV-----VDWGSVPLIEQLELHSPKVSKGMR--FVGGESA 305
+ + P++ P P++ DW QLE +P + G+R + GE+A
Sbjct: 162 LSLGDPPQPLPRPAALRPAPALPGAQLSDW-------QLEPTAPDWAGGLRATWRPGEAA 214
Query: 306 ALGRVNEYFWKKDLLKVYKETRNEMLGPD--YSTKFSPWLASGSISPRYIYEEVK--SYE 361
A R+ ++ + L Y E R+ PD ++ SP+L G ISPR ++ + + E
Sbjct: 215 AKTRLADFLAR---LPGYAEGRDY---PDRHVTSGLSPYLRFGEISPRQVWYAARFAAAE 268
Query: 362 RERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGC 421
R +A D L EL WR++ R + + + P + W D +W+ G
Sbjct: 269 RPAIAPDIDK-FLSELGWREFCRHLLADHPDLAARNLQPAFDAFPWQSDDGALTAWQRGR 327
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TGYP++DA M EL +G M NR R + SFLV+ + IDWR+G +WF L+D DP SN G
Sbjct: 328 TGYPIVDAGMHELWHSGVMHNRVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPG 387
Query: 482 NWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
NW + AG G D R F+ Q++ +D +G Y+ WLP+L LP
Sbjct: 388 NWQWVAGCGADAAPYFRVFNPVLQSEKFDADGAYIRRWLPELAGLP 433
>gi|192291959|ref|YP_001992564.1| deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
TIE-1]
gi|192285708|gb|ACF02089.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
TIE-1]
Length = 483
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 145/491 (29%), Positives = 224/491 (45%), Gaps = 59/491 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR+DLR+ D+ AL A S VL VY +D S G GA+R +L + L
Sbjct: 11 IVWFRDDLRLADHPALHAAAQSGAPVLCVYVLD-EVSDDVRALG----GAVR-WWLAQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L +L G L++R G ++ LA+ A AV+ + +E + +
Sbjct: 65 RALESDLRALGGALILRRGPAAAVLAELAQQHDAAAVHWNE--------IEIAAHRAVAD 116
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + + H G T+ I V+T F + + + +
Sbjct: 117 ALADALTVAGIAYHRHR----GDTLVEPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQPLP 172
Query: 264 IPSSFGPPPS-----VVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWK 316
P++ P P+ + DW QLE +P + G+R + GE+AA R++++
Sbjct: 173 RPTTLRPAPAPPSDQLGDW-------QLEPTAPDWAGGLRQTWTPGEAAAQARLSDFLAG 225
Query: 317 KDLLKVYKETRNEMLGPD--YSTKFSPWLASGSISPRYIYEEVK--SYERERVANDSTYW 372
L Y + R+ PD ++ SP L G ISPR ++ + + ER +A D
Sbjct: 226 ---LPGYADGRDY---PDRHITSGLSPHLRFGEISPRQVWYAARFAAAERPAIAPDIDK- 278
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL WR++ R + + + P + W D + +W+ G TGYP++DA M+
Sbjct: 279 FLSELGWREFCRHLLFDHPDLATRNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMR 338
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL +G M NR R + SFLV+ + IDWR+G +WF L+D DP SN GNW + AG G D
Sbjct: 339 ELWHSGVMHNRVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGAD 398
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------------GGS 536
R F+ Q++ +D G Y+ W+P+L LP + + P GG+
Sbjct: 399 AAPYFRVFNPVLQSEKFDAGGAYIQRWVPELAGLPNDLIHQPWTATPLELAAAGIELGGN 458
Query: 537 YIEQIVSLKHG 547
Y IV K G
Sbjct: 459 YPGPIVDHKTG 469
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 137/464 (29%), Positives = 215/464 (46%), Gaps = 47/464 (10%)
Query: 84 IVWFRNDLRVLDNEALL-KAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
I WFR DLR+ DN AL A S V+P++ +D H P+TG R F+I
Sbjct: 4 IHWFRRDLRLRDNPALSGAAARSGGRVIPLFILD----DAILHA--PRTGMARVAFMIAA 57
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DL +L RG L++R G+P +++ L + GA V ++ ++ + L+
Sbjct: 58 LRDLDASLRARGSRLVVRRGRPSDVLRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLR 117
Query: 203 QV-VLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR-- 259
+ V + + D P DD+ D VYT +R+ A R
Sbjct: 118 DLNVATFIAADAVIMEP-------------DDVRTDDGRPYTVYTPYRRRWRALVEQRRD 164
Query: 260 GCIRI--PSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF-VGGESAALGRVNEYFWK 316
+R P P P V +P+ + +L VS R GGE+ R+ +
Sbjct: 165 DVLRAYEPPVLQPVPDGV--ADLPIPDNPDL---DVSVIQRIPAGGETTGAARLAAFLDP 219
Query: 317 KDLLKV--YKETRNEMLGPDYSTKFSPWLASGSISPRYIY-----------EEVKSYERE 363
+ + Y + RN + P +++ SP+L G ++PR EE +
Sbjct: 220 RATHGIAGYADGRNLLAEP-ATSRLSPYLRFGCVAPRAALRAALNLLDRAGEEQDAECAA 278
Query: 364 RVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTG 423
+ W+ EL WRD++ I + + L P+ +W D LF++W++G TG
Sbjct: 279 TLTRSIETWI-GELAWRDFYYQILWHHPHVLRSAFKPQYDALEWENDPALFDAWKEGRTG 337
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YP++DA M++L+ +M NR R I SFL +D+ IDWR G +F L+D D +N G W
Sbjct: 338 YPVVDAAMRQLNREAWMHNRARMIVASFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGW 397
Query: 484 TYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+ AG G D + R F+ Q Q +D +G YV +LP+L+A+P
Sbjct: 398 QWSAGTGTDAQPYFRIFNPVSQGQTFDPKGAYVRRYLPELEAVP 441
>gi|392382530|ref|YP_005031727.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
gi|356877495|emb|CCC98335.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
Length = 485
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 135/456 (29%), Positives = 210/456 (46%), Gaps = 44/456 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR+DLR+ DN AL A + V+PVY + + P GA +L L
Sbjct: 9 LVWFRSDLRLADNPALSAAAEDGAPVIPVYI----REKDAHDPWLP--GAASRWWLHGSL 62
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L K L G L++R G P ++ +LA+ GA V + + +R V + L
Sbjct: 63 ERLGKALAKLGSPLVLRSGDPASVLAALAEETGADTVLCNRRAGPTAIARDRRVGERLSA 122
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
++ ++ + L T+ D PF V+T F K++ + R
Sbjct: 123 RGVTVHPHNAAL------LYEPGTIRTKSDTPFR------VFTPFWKALLSMPEPPRPTR 170
Query: 264 IPSSFGPPP------SVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
P PP S+ DW +P +P + G+R + GE AA R+ ++
Sbjct: 171 APGKLTPPAKPVSSESLKDWCLLP-------SAPDWAGGLRERWTPGEEAARERLADFL- 222
Query: 316 KKDLLKVYKETRNEMLGPDY--STKFSPWLASGSISPRYIYEEVK--SYERERVANDSTY 371
+ Y R+ PD+ ++ SP LA G I PR I+ + + +R +A +
Sbjct: 223 -DGPVAAYPAERDR---PDHDGTSAMSPHLAFGEIGPRQIWHAARHAADQRHELAAGAEA 278
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
L EL WR++ + + R + W D+ +W+ G TGYP++DA M
Sbjct: 279 -FLRELGWREFNHHLLREEPGIPDTPLDTRFARFPWRTDKAGLRAWQSGRTGYPIVDAGM 337
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L TG+M NR R I SFL++D+ I W+ G WF L+D D +N GNW + AG G
Sbjct: 338 RQLWQTGWMHNRVRMIVGSFLIKDLLIPWQEGESWFWDTLVDADIANNAGNWQWVAGCGA 397
Query: 492 DPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D R F+ Q + +D EG YV ++P+L+ALP
Sbjct: 398 DAAPFFRVFNPILQGEKFDPEGAYVRRYVPELEALP 433
>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
Length = 600
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 134/464 (28%), Positives = 210/464 (45%), Gaps = 38/464 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
+G +I+WFR LR+ DN AL A S V P++ +DP Q + + K G R QFL
Sbjct: 48 QGRSILWFRKGLRLHDNPALRDACTGSAAVFPIFIIDPYFLQKSNN----KVGVNRYQFL 103
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+E L+DL +L + G LL+ G PEE+IP + + ++ K+ C E ++ E +
Sbjct: 104 LESLSDLNSSLTSLGSQLLVLRGTPEEVIPRVLRD------WSIKKLCYE-IDTEPYAKA 156
Query: 200 NLQQVV-LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSS-LPDVYTHFRKSIEAKCT 257
+V ++ ++ + H W T+Y D + ++ P F K ++
Sbjct: 157 RDARVDDMAREAGVEVKKH------WSHTLYDTDMLVRENKGKAPLTMQAFEKLVDRVGH 210
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSP-------KVSKGMRFVGGESAALGRV 310
+ P++ PP V S+P I+ E+ P K + F GGE+ AL R+
Sbjct: 211 PLTALPAPTARLPPVDV----SLPGIKDAEVGVPTWQEMGFKEAPTAIFKGGETEALKRL 266
Query: 311 NEYF----WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
Y W K T +T SP+L G +S R+ ++ + R
Sbjct: 267 EHYMKDTKWXASFEK--PSTDPSAFTEPSTTALSPYLKFGCLSARFFHQRLLDVYRLHPK 324
Query: 367 NDSTYWVL-FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYP 425
+ L +L+WR++F + N G P + W + L ++WRDG TGYP
Sbjct: 325 HSQPPMSLRGQLLWREFFYTLGSHTPNFDRIAGNPICRQITWDTNPALLKAWRDGATGYP 384
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
IDA M +L G+M + R FL R D+ + W G E FE LLD D N NW
Sbjct: 385 WIDAAMTQLREWGWMHHLARHSVACFLTRGDLYLSWESGKEVFEELLLDADYFINAANWM 444
Query: 485 YGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
+ + + R +S + YD+EG Y+ +LP LK +P +
Sbjct: 445 WLSASAFFAQYFRVYSPVVFGKKYDKEGAYIRKFLPVLKDMPAK 488
>gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
Length = 477
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 211/458 (46%), Gaps = 48/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN + A + S V VY +DP P R FL+E L
Sbjct: 7 LFWHRRDLRLADNLGIQAAVEISPAVTGVYVLDPALIHPPQ--ALPPMAPARLWFLLESL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L++ G LLI G P +++P LA+ A AV + +VE R+ +Q
Sbjct: 65 IELQQRWRAAGSRLLILEGDPVQMLPPLAERLSAEAVVWNR-------DVEPYSRERDRQ 117
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V Q++ + Q+ + W + + + VY F ++ K +
Sbjct: 118 VAKRLQADGR-----QVVVDWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGKVQAQQ--- 169
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV------GGESAALGRVNEYFWKK 317
P++ P +VD S + E L + + G + GESAAL ++ +
Sbjct: 170 -PTTIEAPSGLVDLDSSLVPEGDPLAALRHDHGFQGTEICPCRPGESAALEQLTCF--AD 226
Query: 318 DLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIY---EEVKSYERERVANDSTYW 372
L Y+ RN ++G Y S L+ G++SPR + ++ + + R +
Sbjct: 227 GALSAYEPDRNFPNVVGTSY---LSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAV 283
Query: 373 VLFELMWRDYFRFISLKYGNSLFHL----GGPRKLEYK---WSQDQKLFESWRDGCTGYP 425
EL WR++ Y +LFH GP + +++ W ++ F SWRDG TG P
Sbjct: 284 WEQELGWREF-------YQQALFHFPELADGPYREQWRRFPWENNEAWFSSWRDGMTGMP 336
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
+IDA M++L+ +G+M NR R I SFLV+D+ DWR G F +D D +N G W +
Sbjct: 337 IIDAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQW 396
Query: 486 GAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
A G DP+ R F+ QA +D +G+Y+ WLP+L+
Sbjct: 397 SASSGMDPKPLRIFNPATQATKFDADGDYIRRWLPELR 434
>gi|427702985|ref|YP_007046207.1| deoxyribodipyrimidine photolyase [Cyanobium gracile PCC 6307]
gi|427346153|gb|AFY28866.1| deoxyribodipyrimidine photolyase [Cyanobium gracile PCC 6307]
Length = 413
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 147/298 (49%), Gaps = 19/298 (6%)
Query: 235 PFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS 294
P P V++ FR+ +E + G W +P + SP S
Sbjct: 113 PVAAERFPGVFSPFRRGLERDPEPPLPPPDLAGLGD-----AWDELPRSWLVPPASPPAS 167
Query: 295 KG------MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSI 348
G F G E AL R+ Y + L+ YK TRN ++G +S KFSP+L GS+
Sbjct: 168 AGPDPRSAFPFSGDEPTALARLEHYLFGSSGLRDYKLTRNGLVGTAFSAKFSPFLGVGSL 227
Query: 349 SPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG----PRKLE 404
S R I++EV Y+ A++ + W+ EL+WR++F + ++G + GG P
Sbjct: 228 SVRRIWQEVLRYQELHGADEGSEWMKQELLWREFFLWSEQRHGEAFHAPGGLQNRPAAAP 287
Query: 405 YKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGA 464
+ ++ F W G TG+PLIDA + EL TG++SNRGRQ S V ++ + W GA
Sbjct: 288 ADPQEARERFVRWTRGDTGHPLIDAQLSELLTTGYLSNRGRQWVASHFVNELQLPWTWGA 347
Query: 465 EWFETCLLDYDPCSNYGNWTYGAGVGNDPR----EDRYFSIPKQAQNYDREGEYVAYW 518
+FE L+D P N GNW Y AGVG+DPR R F + +Q + YD E + W
Sbjct: 348 RFFEWALIDAHPALNTGNWAYLAGVGSDPRSFGGSPRRFDLERQVRLYDPEQTHRRLW 405
>gi|357032216|ref|ZP_09094156.1| deoxyribodipyrimidine photolyase [Gluconobacter morbifer G707]
gi|356414443|gb|EHH68090.1| deoxyribodipyrimidine photolyase [Gluconobacter morbifer G707]
Length = 481
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 139/456 (30%), Positives = 219/456 (48%), Gaps = 48/456 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV FR+DLR+ D+ AL +A S VL VY +D S P GA +L L
Sbjct: 12 IVCFRDDLRMADHPALHEAAASGAPVLCVYVLDDETSD------LPPPGAASRWWLHGTL 65
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV-ERLVRKNLQ 202
ADLR L RG LL G E+I+P LA+ A +Y +E ERL+R
Sbjct: 66 ADLRGALEKRGGTLLTLGGPLEKILPRLAEETNARCIYWHHRLHEKERQQDERLIR---- 121
Query: 203 QVVLSSQSNDKSTNHP--QLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ NH +++ WG+ + + I VYT F K+++ + V
Sbjct: 122 -----------TLNHKGVEVRAQWGSVLLDPERIRTKEGGFYRVYTSFWKALQGQA-VPE 169
Query: 261 CIRIPSSFG---PPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
+ +PS F PS++ + L H P + G+R + GE A + ++
Sbjct: 170 PLDLPSDFPFFRVAPSLMKTDRLDEAALLPRH-PDWAGGLRSTWEPGEREAHEHLTDFLH 228
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY----ERERVANDSTY 371
+ + Y R+ ++ + +++ SP+LASG+ISPR ++ V + E R+
Sbjct: 229 HE--VDHYGRGRD-LMAEEGTSRLSPYLASGAISPRQVWATVGEHGLNGEDARIFRS--- 282
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDAN 430
E+ WR++ R+ +L + L RK + W + + +W+ G TG P++DA
Sbjct: 283 ----EIGWREFARY-TLYHFPQLCERNLNRKFDALSWRRAPEDLRAWQKGQTGIPVVDAA 337
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L TG+M NR R I SFL + + +DWR G WF L+D D +N NW + AG G
Sbjct: 338 MRQLWQTGWMHNRARMIVGSFLTKHLLVDWREGEAWFWDTLVDADRANNTMNWQWVAGTG 397
Query: 491 NDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
D R F+ +QA+ +D +G+Y+ W+P+L L
Sbjct: 398 IDAAPFFRVFNPSRQAEKFDPDGDYIRRWVPELAKL 433
>gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
Length = 477
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 135/458 (29%), Positives = 213/458 (46%), Gaps = 48/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN + A + S V VY +DP Q P R FL+E L
Sbjct: 7 LFWHRRDLRLADNLGIQAAVEISPAVTGVYVLDPALIQPPQ--SLPPMAPARLWFLLESL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L++ G LLI G P +++P LA+ GA AV + +VE R+ +Q
Sbjct: 65 IELQQRWRAAGSRLLILEGDPVQVLPPLAERLGAEAVVWNR-------DVEPYSRERDRQ 117
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V Q++ + ++ + W + + + VY F ++ K + I
Sbjct: 118 VAKRLQADGR-----KVVVDWDQLLIPPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPIT 172
Query: 264 IPSSFGPPPSVVDWGSV------PLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
I + P +VD S PL L H + ++ GESAAL ++ +
Sbjct: 173 IEA----PSGLVDLHSDLVPDRDPLAALLHRHGFQGTEICPCRPGESAALEQLTLF--AD 226
Query: 318 DLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIY---EEVKSYERERVANDSTYW 372
L Y+ RN ++G Y S L+ G++SPR + ++ + + R +
Sbjct: 227 GPLSGYEPDRNFPSVVGTSY---LSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAV 283
Query: 373 VLFELMWRDYFRFISLKYGNSLFHL----GGPRKLEYK---WSQDQKLFESWRDGCTGYP 425
EL WR++ Y +LFH GP + +++ W ++ F SWR+G TG P
Sbjct: 284 WEQELGWREF-------YQQALFHFPELADGPYREQWRRFPWENNEAWFSSWREGMTGMP 336
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
+IDA M++L+ +G+M NR R I SFLV+D+ DWR G F +D D +N G W +
Sbjct: 337 IIDAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQW 396
Query: 486 GAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
A G DP+ R F+ QA +D +GEY+ W+P+L+
Sbjct: 397 SASSGMDPKPLRIFNPATQATKFDADGEYIRRWVPELR 434
>gi|259909092|ref|YP_002649448.1| deoxyribodipyrimidine photolyase [Erwinia pyrifoliae Ep1/96]
gi|224964714|emb|CAX56231.1| Deoxyribodipyrimidine photo-lyase [Erwinia pyrifoliae Ep1/96]
Length = 477
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 219/457 (47%), Gaps = 40/457 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN AL A S + V+ ++ P +T H PK +A+F+ +
Sbjct: 5 LVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRT--HLMAPK----QAEFIWQS 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG----AHAVYAQKETCSEELNVERLVR 198
L D++++L RG+ L + +L + F + ++ + E + V
Sbjct: 59 LQDVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ LQ + Q D S P ++ G MY V+T F K+ K
Sbjct: 119 RTLQHDNVVVQGFDDSLLLPPGSVLTGNREMY-------------KVFTPFSKAF-VKRL 164
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPL----IEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
+G +P P P+V G+V + + + G+ F GE AA+ R+ E+
Sbjct: 165 QQG---LPECL-PAPAVRPGGAVEARAGSLVAFDYPREDIDAGL-FPSGEKAAIARLREF 219
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
+ + Y + RN + D +++ S +LA+G +SPR + + + +
Sbjct: 220 C--QQAVADYPDKRN-LPACDGTSRLSVYLATGVLSPRQCLHRLLKQHPGALEDSRVFVW 276
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + + + H R KW D + +W+ G TGYP++DA M+
Sbjct: 277 LNELIWREFYRHLLVAFPALCRHQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMR 336
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ G+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 337 QLNSLGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 396
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q + +D++GE++ +WLP+L+ +P E
Sbjct: 397 AAPYFRIFNPTTQGERFDKDGEFIRHWLPELRHVPPE 433
>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
Synechococcus sp. (Anacystis nidulans)
gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
Length = 484
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 136/486 (27%), Positives = 211/486 (43%), Gaps = 74/486 (15%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A S ++ ++C+DP+ Q+ R +L CL
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSA------DMAPARVAYLQGCL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L++ G LL+ G P+ +IP LA+ A AVY + ++E R Q
Sbjct: 60 QELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQ-------DIEPYGRDRDGQ 112
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V + ++ +W ++ D I + VY F K+ +A+
Sbjct: 113 VAAALKTAGIRAVQ-----LWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPK------ 161
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKV--------------SKGMRFVGGESAALGR 309
P+ P +VD EQL +P + G GE+AA+ R
Sbjct: 162 -PTPVATPTELVDLSP----EQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIAR 216
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPR---YIYEEVKSYERERVA 366
+ E+ + Y RN ++ SP L G+I R + R A
Sbjct: 217 LQEFC--DRAIADYDPQRN-FPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEA 273
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHL----GGP-RKL--EYKWSQDQKLFESWRD 419
+S EL WR++ Y ++L+H GP R L ++ W + LF +W
Sbjct: 274 RNSIRVWQQELAWREF-------YQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQ 326
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
TGYP++DA M++L+ TG+M NR R I SFL +D+ IDWR G ++F L+D D +N
Sbjct: 327 AQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAAN 386
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL-----------PKE 528
G W + A G DP+ R F+ QA+ +D Y+ WLP+L+ + P E
Sbjct: 387 NGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIE 446
Query: 529 RRNFPG 534
RR +P
Sbjct: 447 RRGYPA 452
>gi|387872028|ref|YP_005803405.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia
pyrifoliae DSM 12163]
gi|283479118|emb|CAY75034.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia
pyrifoliae DSM 12163]
Length = 504
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 219/457 (47%), Gaps = 40/457 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN AL A S + V+ ++ P +T H PK +A+F+ +
Sbjct: 32 LVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRT--HLMAPK----QAEFIWQS 85
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG----AHAVYAQKETCSEELNVERLVR 198
L D++++L RG+ L + +L + F + ++ + E + V
Sbjct: 86 LQDVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVE 145
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ LQ + Q D S P ++ G MY V+T F K+ K
Sbjct: 146 RTLQHDNVVVQGFDDSLLLPPGSVLTGNREMY-------------KVFTPFSKAF-VKRL 191
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPL----IEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
+G +P P P+V G+V + + + G+ F GE AA+ R+ E+
Sbjct: 192 QQG---LPECL-PAPAVRPGGAVEARAGSLVAFDYPREDIDAGL-FPSGEKAAIARLREF 246
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
+ + Y + RN + D +++ S +LA+G +SPR + + + +
Sbjct: 247 C--QQAVADYPDKRN-LPACDGTSRLSVYLATGVLSPRQCLHRLLKQHPGALEDSRVFVW 303
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + + + H R KW D + +W+ G TGYP++DA M+
Sbjct: 304 LNELIWREFYRHLLVAFPALCRHQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMR 363
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ G+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 364 QLNSLGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 423
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q + +D++GE++ +WLP+L+ +P E
Sbjct: 424 AAPYFRIFNPTTQGERFDKDGEFIRHWLPELRHVPPE 460
>gi|85058846|ref|YP_454548.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str.
'morsitans']
gi|84779366|dbj|BAE74143.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str.
'morsitans']
Length = 481
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 51/462 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
+ +VW RNDLR+ DN AL A D+ VL V+ P+ Q H P+ A F+
Sbjct: 3 IHLVWLRNDLRLHDNTALHAACQDTQARVLAVFIATPQ--QWRDHDMSPRQAA----FIR 56
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE-------ELNV 193
+ L L + L RG+ L A A + Q+E + ELN
Sbjct: 57 QNLRHLAEELAARGIALHYHQ------CADFAAQVEWLAAFCQRERVDKLFYNYQYELN- 109
Query: 194 ERLVRKNLQQVV---LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 250
ER + L+Q + Q D S P + G + VYT FR
Sbjct: 110 ERERDRRLEQRIGEKTLCQGFDDSVLLPPGSVHTGNQQMY------------KVYTPFRN 157
Query: 251 SIEAKCTVR--GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALG 308
+ + + C+ PS P + E P G + GE+AAL
Sbjct: 158 AFLGRLEEQDPACLPAPSPRAGAPCA------KVCEIAPFDYPMTPPGEAYPAGEAAALS 211
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV-KSYERERV-A 366
R+ + ++ L+ Y R+ + D +++ S WLA G +SPR Y+ + K+Y R
Sbjct: 212 RLRTFCHQQ--LQDYHRGRD-IPALDATSRLSAWLAVGVLSPRQCYQRLRKAYPRALTPG 268
Query: 367 NDSTYWVLFELMWRDYFRFISLKY-GNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYP 425
+ + L EL+WRD++R + + + + P W QD LF++W G TGYP
Sbjct: 269 QNGAFTWLNELIWRDFYRHLLVAWPALCRYQPFIPWTRHVVWRQDDDLFDAWCAGRTGYP 328
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M++L+ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W +
Sbjct: 329 IVDAAMRQLAETGWMHNRLRMISASFLVKDLLIDWRRGERYFMSQLIDGDLAANNGGWQW 388
Query: 486 GAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
A G D R F+ Q + +D +G ++ WLP L+++P
Sbjct: 389 AASTGTDAAPYFRIFNPTTQGERFDGDGAFIRRWLPALESVP 430
>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 482
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 133/475 (28%), Positives = 216/475 (45%), Gaps = 42/475 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++WFRNDLR+ D+ AL+ A + +LP+Y +D + K G +L + L
Sbjct: 7 VLWFRNDLRLGDHAALVAAVHTGAPILPLYILDDASPKQW------KMGGASHWWLDKSL 60
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L +L +RG L++R G E + + + GA AVY + + +E+ ++ L
Sbjct: 61 AALAGDLASRGGPLVLRRGDSETELLRMIEETGAAAVYFTRSYEPWAVALEQRLKTKLDD 120
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
++ + G + +D+ + VYT F ++I +R
Sbjct: 121 ANVACRR------------FGGRLLREPEDMRTSNGGFYKVYTPFSRAIMKDLVPAKSVR 168
Query: 264 IPSSFGP----PPS--VVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
P P S + DW P P SKG + GE+ A R++++
Sbjct: 169 APERIATLEKQPKSERLRDWALHP-------QKPDWSKGFAAAWQPGEAGARKRLSDFV- 220
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND-STYWVL 374
+ LK Y RN P +++ SP LA G ISP + + +D + L
Sbjct: 221 -RTALKSYARDRNCPATPG-TSRLSPHLAFGEISPAACWHAAAHAGGKTNGSDNAAETFL 278
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR++ + + P + W + K ++W+ G TGYP++DA M+EL
Sbjct: 279 KELLWREFSAGLLFHFPELPEEPFRPEFSAFPWHGNAKHLKAWQTGQTGYPIVDAGMREL 338
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
TG+M NR R I SFL++ + I W+ G WF L+D D +N NW + AG G D
Sbjct: 339 WATGYMHNRVRMITASFLIKHLLIPWQTGEAWFWDTLVDADLANNSANWQWVAGSGADAA 398
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP----GGSYIEQIVSL 544
R F+ Q + +D +G+YV W+P+L LP++ + P G+ +E V L
Sbjct: 399 PYFRIFNPVLQGEKFDPDGDYVRRWVPELAKLPRQIIHAPWKADSGTLMEAGVKL 453
>gi|251772673|gb|EES53237.1| Deoxyribodipyrimidine photo-lyase [Leptospirillum
ferrodiazotrophum]
Length = 468
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 147/461 (31%), Positives = 224/461 (48%), Gaps = 49/461 (10%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+IVWFR++LR+ DN L A VLPVY DP S FP +R ++
Sbjct: 3 SIVWFRHNLRLSDNRPLSLA-AKEGAVLPVYVHDPTLSL------FPDR--VRQRWRKRS 53
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +L ++L G L + G EI+ +A A VYA + E+ +E + L+
Sbjct: 54 LWELDRSLRKLGNRLHVFSGSSCEILLKVATRVRAERVYAFRGLTGEDRALEERLENELR 113
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ +S L L T+Y D SS ++T + +
Sbjct: 114 KAGVS------------LHLTGFDTLYPPDLAAEGRSSPWKIFTPYHRFCRQSF------ 155
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVG---GESAALGRVNEYFWKK 317
+P P PS VD S+P + L G FVG GE+ A+ + E+ +
Sbjct: 156 -LPEHPLPAPSRVD--SLPSLASLGGEEEVGGAGEVVSFVGFEPGEAGAMHCLREFL--E 210
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ L Y +R + + +++ SP LASG IS R I + ++ E + D + L EL
Sbjct: 211 NSLAGYA-SRRDYPAEEGTSRLSPHLASGEISVREIVQRLQ--ESDAPGKDREKF-LEEL 266
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPLIDANM-KE 433
WR++ + + L P K E+ +W+ D+ F +W++G TG+PL+DA M +E
Sbjct: 267 GWREFSAHLLFFHPEMLV---DPLKKEWATMEWTSDEAGFLAWKEGRTGFPLVDAGMMRE 323
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+M NR R +A SFLV+++G+ W+ G+ WF LLDYDP +N +W + AG G D
Sbjct: 324 LAETGWMHNRVRMVAASFLVKNLGVSWQSGSRWFAERLLDYDPANNAASWQWVAGCGIDA 383
Query: 494 RED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q Q YD G+YV +LP+L ALP E+ + P
Sbjct: 384 APYFRIFNPVLQGQRYDPHGKYVRRFLPELSALPDEKIHLP 424
>gi|424890665|ref|ZP_18314264.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393172883|gb|EJC72928.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 482
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 136/470 (28%), Positives = 210/470 (44%), Gaps = 59/470 (12%)
Query: 75 LKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
+ ++ I+WFR DLR+ DN AL A S ++P+Y +P H G GA
Sbjct: 1 MAKDAAKPVILWFRKDLRLDDNHALAAADLSGRPIIPLYIKEP-----AAHSG--ALGAA 53
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
+A +L L L +L R L++ G+ +++ +L GA AV+ + ++
Sbjct: 54 QAWWLHHSLEALDGSLRKRQGRLVLASGEALDVLGALISESGAEAVFWNRCYDPSGTAID 113
Query: 195 RLVRKNLQQVVLSSQS-NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
++ LQ+ + ++S + P + G T Y VYT F +++E
Sbjct: 114 IRIKHELQKQAIEARSFGGQLLYDPSRLMTGGGTPYR-------------VYTPFWRALE 160
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK-------GMRFVGGESAA 306
+ P+ +P E+LE +K G + GE A
Sbjct: 161 GAGEPERPVEAPAKLRLA------AQLPKSERLESWKLLPTKPDWARDFGDLWTPGEQGA 214
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTK-----FSPWLASGSISPRYIYEEVKSYE 361
++ + +D L YKE R DY K SP LA G ISP I++ +
Sbjct: 215 REKLRSFV--EDGLDGYKENR------DYPAKQATSLLSPHLALGEISPARIWDATRGLS 266
Query: 362 RERVANDSTYWVLFELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFES 416
+ A D ++ E+ WR++ F F L N G +KW D F +
Sbjct: 267 KRMPAADILHFRK-EIAWREFSYHLLFHFPRLASDNWNARFDG-----FKWRNDDDDFAA 320
Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDP 476
WR G TGYP++DA M++L G+M NR R I SFL++D+ +DWR G WF L+D DP
Sbjct: 321 WRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIKDLMVDWRRGEAWFRDTLVDADP 380
Query: 477 CSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+N +W + AG G D R F+ Q Q +D G+YV +LP+L+ L
Sbjct: 381 ANNAASWQWVAGSGADASPFFRIFNPVLQGQTFDPRGDYVRTYLPELREL 430
>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 136/486 (27%), Positives = 211/486 (43%), Gaps = 74/486 (15%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A S ++ ++C+DP+ Q+ R +L CL
Sbjct: 5 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSA------DMAPARVAYLQGCL 58
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L++ G LL+ G P+ +IP LA+ A AVY + ++E R Q
Sbjct: 59 QELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQ-------DIEPYGRDRDGQ 111
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V + ++ +W ++ D I + VY F K+ +A+
Sbjct: 112 VAAALKTAGIRAVQ-----LWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPK------ 160
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKV--------------SKGMRFVGGESAALGR 309
P+ P +VD EQL +P + G GE+AA+ R
Sbjct: 161 -PTPVATPTELVDLSP----EQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIAR 215
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPR---YIYEEVKSYERERVA 366
+ E+ + Y RN ++ SP L G+I R + R A
Sbjct: 216 LQEFC--DRAIADYDPQRN-FPAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEA 272
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHL----GGP-RKL--EYKWSQDQKLFESWRD 419
+S EL WR++ Y ++L+H GP R L ++ W + LF +W
Sbjct: 273 RNSIRVWQQELAWREF-------YQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQ 325
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
TGYP++DA M++L+ TG+M NR R I SFL +D+ IDWR G ++F L+D D +N
Sbjct: 326 AQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAAN 385
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL-----------PKE 528
G W + A G DP+ R F+ QA+ +D Y+ WLP+L+ + P E
Sbjct: 386 NGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIE 445
Query: 529 RRNFPG 534
RR +P
Sbjct: 446 RRGYPA 451
>gi|385206442|ref|ZP_10033312.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
gi|385186333|gb|EIF35607.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
Length = 499
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 133/461 (28%), Positives = 212/461 (45%), Gaps = 32/461 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ---TTYHFGFPKTGAL--RA 136
+VW R DLR DN AL A E V V+ D Q +H P T R
Sbjct: 13 TGLVWLRRDLRNTDNAALYYALKHCERVWCVFVFDTTILQPLVDAWHARHPDTQPQDRRI 72
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+F++ L +L + L G L++ +G P +++P+LA GA AV+A + + +
Sbjct: 73 EFILAALGELDEALRTDGGGLIVLYGNPADLVPTLADELGADAVFANHDYEPVAIERDET 132
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
VR+ L + + + +++ G + P+ ++ L + T K +
Sbjct: 133 VREQLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSTFDLKPYPVET 192
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
+ +PS +P +EQL +P + G S A ++++ +
Sbjct: 193 YAKHLAALPSRLD--------RQLPTLEQLGF-APSNLGELSLPTGMSGAQRLLDDFMTR 243
Query: 317 KDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
D Y + R+ GP Y S L G++S R + + S W L
Sbjct: 244 ID---SYADRRDFPAAKGPSY---LSIHLRFGTVSIRTLARLAHELSLQPDGQGSATW-L 296
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQD---QKLFESWRDGCTGYPLID 428
EL+WRD++ F+ L + L G K EY +W Q + F +W DG TGYPL+D
Sbjct: 297 SELIWRDFY-FMILAHHPRLAR-GASFKEEYDRLRWEQGPEADEAFAAWCDGRTGYPLVD 354
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M +L+ TG+M NR R + SFLV+D+G+DWR+G +F L D+D +N G W + A
Sbjct: 355 AAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAAS 414
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D + R F+ Q++ +D EG ++ +LPQL LP +
Sbjct: 415 TGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSK 455
>gi|345853246|ref|ZP_08806153.1| deoxyribodipyrimidine photo-lyase [Streptomyces zinciresistens K42]
gi|345635300|gb|EGX56900.1| deoxyribodipyrimidine photo-lyase [Streptomyces zinciresistens K42]
Length = 456
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 220/481 (45%), Gaps = 52/481 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+++V F +DLR+ D+ L A D +E +P++ D + F P R FL +
Sbjct: 3 ISVVLFTSDLRLHDHPPLRAALDGTEWTVPLFVRD--RAVDAAGFAVPN----RLAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL DL L RG L++R G + + +A A V+ + + E +R+ L
Sbjct: 57 CLRDLDTGLRERGGRLVLREGDLVDQVGKVAAEADADEVHMASDVSAHARRREEGLRRAL 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT-HFRKSIEAKCTVRG 260
+ + +D T + H V+T +FR+ +K +R
Sbjct: 117 EAEGVRLHVHDTVTTAVAPGAVTPAGSDHFA-----------VFTPYFRRW--SKERLRD 163
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+R P + P V GS PL + E+ +S+G+ GGE A GR W + +
Sbjct: 164 PLRAPRTVRVPEGV---GSDPLPVRGEVRG--LSEGL-AEGGEEA--GRTRLTAWLRHRV 215
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
Y++ +++ G D +++ SP L G++SP + + R + +L WR
Sbjct: 216 SAYEDRHDDLAG-DATSRLSPHLHFGTLSPVELVHRAR-----RAGGPGADAFVRQLAWR 269
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFE---SWRDGCTGYPLIDANMKELSMT 437
D+ R + ++ R W +++ E +W++G TGYP++DA M++L
Sbjct: 270 DFHRQVLASRPDAA--TADYRARHDHWRSEREAGEDIAAWKEGRTGYPVVDAAMRQLRHE 327
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+M NRGR + SFL + + +DWR+GA F L+D D +N NW + AG G D R +R
Sbjct: 328 GWMHNRGRLLTASFLAKTLYVDWRVGARHFLDLLVDGDIANNQLNWQWVAGTGTDTRPNR 387
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKA-----------LPKERRNFPGGSYIEQIVSLKH 546
+ QA+ YD +G YV W+P+L LP + R G Y ++IV L
Sbjct: 388 VLNPVAQARRYDPDGGYVRRWVPELAEVAGRAVHEPWRLPDDERA--GLDYPDRIVDLAE 445
Query: 547 G 547
G
Sbjct: 446 G 446
>gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|423208514|ref|ZP_17195068.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|404618359|gb|EKB15279.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
Length = 473
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 225/456 (49%), Gaps = 40/456 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ DN AL A E V ++ + P +Q H K +R +F++ +
Sbjct: 3 LVWFRNDLRLADNPALRHACAGDEPVAALFIISP--TQWRQH----KMAPIRQRFMLAQV 56
Query: 144 ADLRKNLMNRGLNL-LIR---HGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+L + L G+ L L+R + ++ +L + G +YA + +EL + V
Sbjct: 57 DELGRELAALGIQLHLLRVETFAEVPAVLANLCREQGVTQLYANQAIEIDELRRDHAVSA 116
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + +S + P +++ G+ PF + L KS++ + V
Sbjct: 117 ALAEQAVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWL--------KSLDEEGFV- 167
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSP--KVSKGMRFVGGESAALGRVNEYFWKK 317
R P+ G P + W PL E+ + +++ R+ GE+ AL R+N F ++
Sbjct: 168 -IHRAPTPRGEP---LPWQ--PLAERAWVDEALGELTVDPRWPVGEAEALRRLN-IFLEQ 220
Query: 318 DLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPR---YIYEEVKSYERERVANDSTYW 372
+L Y ETR+ + G ++ SP+LA+G ISPR + ++ Y + A W
Sbjct: 221 AVLD-YGETRDFPAIAG---TSVLSPYLAAGIISPRQCVAVLQQRLGYRPQSKAQPGFVW 276
Query: 373 VLFELMWRDYFR-FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
L EL+WR+++R + L S+ P WS D F +W +G TGYP++DA M
Sbjct: 277 -LNELIWREFYRHLLVLIPALSMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAM 335
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+ L+ TG+M NR R I SFL +D+ I WR+G ++F + L+D D +N G W + AG G
Sbjct: 336 RCLNTTGWMHNRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGA 395
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D R F+ Q Q +D +GE++ W+ +L +P
Sbjct: 396 DAAPYFRVFNPTTQGQRFDPQGEFIRTWVTELADIP 431
>gi|317968588|ref|ZP_07969978.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
Length = 479
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 137/481 (28%), Positives = 221/481 (45%), Gaps = 60/481 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR++DN L A ++ V V+ +DP R FL+E L
Sbjct: 7 LFWHRRDLRLVDNLGLAAAAAATLAVTGVFVLDPAILSAA------DMAPARVWFLLESL 60
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L+ + G LL+ G P E++P LAK+ GA V + +VE R+ ++
Sbjct: 61 KELQASWRKAGSQLLLLQGDPAEVLPQLAKAIGAGVVAWNR-------DVEPYGRERDRR 113
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V + Q+ + ++ + W + + + VY F+++ + R
Sbjct: 114 VAAALQAQGQ-----KVLVDWDQLLVAPEALKTGGGDPYRVYGPFKRNWFGQVERRAEAG 168
Query: 264 IPSSFGPPPSVVDW-GSVPLIEQLELHSPKV-SKGMRFVGGE-------SAALGRVNEYF 314
+ P ++ + G +P++ +L P + S G F+G E AA + E F
Sbjct: 169 ELAPRSAPQGLLAYDGELPVLAEL----PSLESLGKTFLGAELCPCRPGEAAAKQQLEAF 224
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY---EEVKSYERERVANDSTY 371
L Y+ RN M G ++ S L G++SPR + ++ K+ R +S
Sbjct: 225 CDGGPLLSYEPGRN-MPGEAGTSGLSAALKFGTLSPRQAWDAAQQAKALARSDEQRESIQ 283
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHL----GGPRKLEYK---WSQDQKLFESWRDGCTGY 424
EL WR++ Y +LFH GP + ++K W D +++W DG TG
Sbjct: 284 VWEQELAWREF-------YQQALFHFPELADGPYRPQWKLFPWENDPDRYQAWCDGLTGM 336
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
P+IDA M++L+ +G+M NR R I S+LV+D+ DWR+G F L+D D +N G W
Sbjct: 337 PIIDAAMRQLNESGWMHNRCRMIVASYLVKDLICDWRLGETAFMARLVDGDLAANNGGWQ 396
Query: 485 YGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL-----------PKERRNFP 533
+ A G DP+ R F+ QA +D EG+Y+ WLP+L + P ERR +P
Sbjct: 397 WSASSGMDPKPLRIFNPATQASKFDPEGDYIRRWLPELSHVNTKDLLSGEITPMERRGYP 456
Query: 534 G 534
Sbjct: 457 A 457
>gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
Length = 479
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 225/456 (49%), Gaps = 44/456 (9%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFR+DLR+ DN AL A S ++ +Y +D P GA R +L
Sbjct: 6 ALVWFRDDLRLADNPALHAAQRSGRPLVLLYLLDEESEGIR-----PLGGAAR-WWLGRA 59
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA + + + +G L++R GK E++P++A A A+Y + + E+ V+ ++ L
Sbjct: 60 LASVTEAIEAKGGQLILRRGKAGEVVPAVAAEAKAGAIYWNRRYGAAEIAVDAALKTELA 119
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q L +S + S H T+ PF V+ F ++ A+ +R
Sbjct: 120 QKGLMVESFNGSLLHEPW------TVKTQSGGPFK------VFGPFYRNA-AQHDIRRPA 166
Query: 263 RIPSS--FGPPPS---VVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
R+ S F P+ + DW +LE +P + G+R ++ GE GR +
Sbjct: 167 RVGSHWHFAETPAGDELRDW-------KLEPTTPDWAGGLRESWIPGEDG--GRAALAAF 217
Query: 316 KKDLLKVYKETRNEMLGPD--YSTKFSPWLASGSISPRYIYEEVK-SYERERVANDSTYW 372
L+ Y R+ PD ++++ SP+L G +SP+ + V+ + + V
Sbjct: 218 VDGGLRSYAAGRDR---PDMEHTSRLSPYLRFGHLSPQQVLAAVRHAADAGEVRGTDVEK 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANM 431
+ EL WR+ F + L + L + R+ + ++W+QD K+ +W+ G TGYPLIDA M
Sbjct: 275 FVSELYWRE-FSYHLLFHFPDLAQVNFNRRFDGFEWNQDAKIERAWQRGLTGYPLIDAGM 333
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L TG+M NR R +A SFL++ +DWR G WF L+D DP +N +W + AG G
Sbjct: 334 RQLWQTGWMHNRVRMVAASFLIKHALVDWRRGEVWFWDTLVDADPANNAASWQWVAGSGA 393
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D R F+ Q + +D +G YV ++P+L LP
Sbjct: 394 DAAPYFRIFNPVTQGEKFDPDGAYVRRFVPELAGLP 429
>gi|182439675|ref|YP_001827394.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178468191|dbj|BAG22711.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 455
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 126/441 (28%), Positives = 206/441 (46%), Gaps = 33/441 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
VA+V F +DLR+ DN L A ++ V+P++ D + GF R FL +
Sbjct: 3 VAVVLFTSDLRLHDNPVLRAALRDADEVVPLFVRD----DAVHRAGFDAPN--RLAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CLA L L +RG L++R G+ + +A+ GA V+ E+ +R+ L
Sbjct: 57 CLAALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREAL 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+D T + +P V+T + + EA+ VRG
Sbjct: 117 ADTGRELHVHDAVV----------TALAPGRVVPTGGKDHFAVFTPYFRRWEAEG-VRGT 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ P + P V +P + +E SP +++G GE A GR W +
Sbjct: 166 LTAPRTVRVPDGVAS-DPLPDRDSVENLSPGLARG-----GEEA--GRKLVTSWLNGPMA 217
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
Y++ +++ G D +++ SP L G++S E+ RE+ +V +L WRD
Sbjct: 218 DYEDGHDDLAG-DATSRLSPHLHFGTVSA----AELVHRAREKGGLGGEAFVR-QLAWRD 271
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+ + ++ + PR +W D ++W+ G TGYPL+DA M++L+ G+M
Sbjct: 272 FHHQVLADRPDASWSDYRPR--HDRWRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMH 329
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NR R +A SFL + + +DWR+GA F L+D D +N NW + AG G D R +R +
Sbjct: 330 NRARMLAASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNP 389
Query: 502 PKQAQNYDREGEYVAYWLPQL 522
Q + +D G+YV W+P+L
Sbjct: 390 VIQGKRFDARGDYVRRWVPEL 410
>gi|374628763|ref|ZP_09701148.1| deoxyribodipyrimidine photo-lyase type I [Methanoplanus limicola
DSM 2279]
gi|373906876|gb|EHQ34980.1| deoxyribodipyrimidine photo-lyase type I [Methanoplanus limicola
DSM 2279]
Length = 476
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 221/468 (47%), Gaps = 48/468 (10%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G+++ FR DLR+ DN ALL A + SE V+PVY +P S + +R F+I
Sbjct: 7 GISVHIFRRDLRLDDNTALLNALERSERVIPVYIAEPEFSINNQNIP-----EVRHSFII 61
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETC--SEELNVERLVR 198
L +L L + L E+ + L K GA A +A ++ +++ +++
Sbjct: 62 RSLNELDLELKEKESRLYYFSDGTEKALEYLIKETGAEAFFANRDYSPYAQKRDIKAAEI 121
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT-HFRKSIEAKCT 257
N + + D N P L Y V+T +FR++ E K
Sbjct: 122 LNSAGITDYCLTPDLMLNEPGRVLRKDGGTY-------------SVFTPYFRRAEEHKVR 168
Query: 258 VRGCIRIPSSF-----GPPPSVVDWGSVPLIEQLELHSPKVSKGM---RFVGGESAALGR 309
V R + + P +++ GS IE ++ + + G GG + AL
Sbjct: 169 VPLKCRYDNFYRSYDINPDKNIIPGGSNTKIE-VKYGTEGLKTGSERNHLKGGRAEALNL 227
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ K LK Y TRN + +T S L G++S R +Y + + DS
Sbjct: 228 LG----KLAELKDYSNTRN-IPSVKGTTYLSAHLKFGTVSVREVYNAIAG----TLGYDS 278
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPL 426
+L +L WRD++ + + + +F GP +Y+ W+ D+KLFE W G TG+P+
Sbjct: 279 E--LLRQLYWRDFYIYTAF-HNPHIF--TGPFHRKYEKLPWNNDEKLFEKWCTGNTGFPI 333
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M+EL+ TG+M NR R I SFLV+D+ I+W G +F + LLDYDPC N GNW +
Sbjct: 334 VDAGMRELNSTGYMHNRVRMITASFLVKDLHINWMRGERYFASKLLDYDPCINNGNWQWS 393
Query: 487 AGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
A G+D + R F+ Q + YD + Y+ W+ +L +P R + P
Sbjct: 394 ASTGSDSQPWFRIFNPWLQQKKYDPDCIYIKRWVTELSDIPPSRIHNP 441
>gi|333926094|ref|YP_004499673.1| deoxyribodipyrimidine photo-lyase [Serratia sp. AS12]
gi|333931047|ref|YP_004504625.1| deoxyribodipyrimidine photo-lyase [Serratia plymuthica AS9]
gi|386327917|ref|YP_006024087.1| deoxyribodipyrimidine photo-lyase [Serratia sp. AS13]
gi|333472654|gb|AEF44364.1| Deoxyribodipyrimidine photo-lyase [Serratia plymuthica AS9]
gi|333490154|gb|AEF49316.1| Deoxyribodipyrimidine photo-lyase [Serratia sp. AS12]
gi|333960250|gb|AEG27023.1| Deoxyribodipyrimidine photo-lyase [Serratia sp. AS13]
Length = 476
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 127/455 (27%), Positives = 216/455 (47%), Gaps = 41/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN+AL A D + VL V+ P Q H P+ A F+
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPAARVLAVFIATP--GQWRQHEMAPRQAA----FIHAN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH----AVYAQKETCSEELNVERLVR 198
L +++ L +RG+ L+ ++ A A++ ++ EL ++ +
Sbjct: 59 LLQVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVDALFYNRQYEFNELKRDQQAQ 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ L V+ +D P G MY +YT FRK+ + T
Sbjct: 119 RRLSGQVICQSFDDSLLLPPGSVQTGGGEMYK-------------IYTPFRKAFIQRLTE 165
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIE-QLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+P+ P + + G +P+ P+ G+ F GE AAL R+ + +
Sbjct: 166 SDVRSLPA-----PKLREGGVLPVSAVPAAFDYPQAEVGVDFPAGEDAALQRLRAFC--R 218
Query: 318 DLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST--YWV 373
+ ++ Y + R+ + G ++ SP+LA G +SPR + +++ + + N + +
Sbjct: 219 EQVQDYLQQRDFPAIAG---TSSLSPYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGW 275
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + + Y H + +W + L +W+ G TGYP++DA M+
Sbjct: 276 LNELIWREFYRHLMVAYPALCRHRPFIEWTDKVRWQDNDVLLLAWQQGATGYPIVDAAMR 335
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I+ SFLV+D+ IDWR G +F + LLD D +N G W + A G D
Sbjct: 336 QLNETGWMHNRLRMISASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTD 395
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D +G ++ WLP+L +P
Sbjct: 396 AAPYFRIFNPTTQGERFDPQGTFIRKWLPELADVP 430
>gi|385787736|ref|YP_005818845.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp.
Ejp617]
gi|310767008|gb|ADP11958.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp.
Ejp617]
Length = 477
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 220/457 (48%), Gaps = 40/457 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN AL A S + V+ ++ P +T H PK +A+F+ +
Sbjct: 5 LVWLRNDLRINDNHALYAACRSKQANVIALFIATPGQWRT--HLMAPK----QAEFIWQS 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG----AHAVYAQKETCSEELNVERLVR 198
L D++++L +G+ L + +L + F + ++ + E + V
Sbjct: 59 LQDVQQSLAAKGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ LQ + Q D S P ++ G MY V+T F K+ K
Sbjct: 119 RTLQHDNVVVQGFDDSLLLPPGSVLTGNREMY-------------KVFTPFSKAF-VKRL 164
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPL----IEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
+G +P P P+V G+V + L+ + G+ F GE AA+ R+ E+
Sbjct: 165 QQG---LPECL-PAPAVRPGGAVEARADSLVALDYPREDIDAGL-FPSGEKAAIARLREF 219
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
+ + Y + RN + D +++ S +LA+G +SPR + + + +
Sbjct: 220 C--QQAVADYPDKRN-LPACDGTSRLSVYLATGVLSPRQCLHRLLKQHPGALEDSRVFVW 276
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + + + H R KW D + +W+ G TGYP++DA M+
Sbjct: 277 LNELIWREFYRHLLVAFPALCRHQPFMRWTKSVKWRVDSQQLTAWQQGKTGYPIVDAAMR 336
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ G+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 337 QLNSLGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 396
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q + +D++GE++ +WLP+L+ +P E
Sbjct: 397 AAPYFRIFNPTTQGERFDKDGEFIRHWLPELRHVPPE 433
>gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
Length = 490
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 137/464 (29%), Positives = 199/464 (42%), Gaps = 40/464 (8%)
Query: 71 TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPK 130
T+KA ++G I+WFR DLR+ DN AL KA + V+PVY H + T
Sbjct: 2 TTKA--QDGPAPVILWFRRDLRLADNPALNKAHATGRPVVPVYI----HDEGT---AVRP 52
Query: 131 TGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEE 190
GA +L + L L +L RG L++R G E + L GA V+ + E
Sbjct: 53 AGAASLWWLDKSLRALAGSLAERGATLILRRGDSETELRRLIDQTGADTVFLNRLFEPEA 112
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFR 249
+ + L+ + + ++ S + L + S P V+T F
Sbjct: 113 WTRDADIAHGLKTDGVECRGSNGS-------------LLALPGSLLNGSGGPYKVFTPFM 159
Query: 250 KSIEAKCTVRGCIRIPSSFGPPPSVVD-----WGSVPLIEQLELHSPKVSKGMRFVGGES 304
K++ A+ P G P + WG P P SKG + GE
Sbjct: 160 KALRAQAEPPAHTTGPRQLGAAPGLESDDLDAWGLHPT-------RPDWSKGFDWTPGED 212
Query: 305 AALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISP-RYIYEEVKSYERE 363
A ++ + L Y R+ P +++ SP L G ISP R + +
Sbjct: 213 GATAALHRFV--SGGLADYSNGRDRPAEP-ATSRLSPHLHFGEISPWRAWIAARDAADGG 269
Query: 364 RVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTG 423
+V + + EL+WRD+ + + P W D+ F +W G TG
Sbjct: 270 KVTSGEADKFIAELIWRDFSAHLLHHFPTLPDKAFRPEYDAMPWRDDEPGFLAWTRGMTG 329
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YP++DA M+EL TG M NR R I SFL++D+ IDWR G WF L+D D SN NW
Sbjct: 330 YPIVDAGMRELWATGVMHNRVRMIVASFLIKDLLIDWRRGEAWFWDTLVDADLASNSQNW 389
Query: 484 TYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+ AG G D R F+ Q Q +D E YV W+P+L +P
Sbjct: 390 QWVAGSGADASPYFRIFNPVTQGQKFDAEARYVKRWIPELAPVP 433
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 130/450 (28%), Positives = 210/450 (46%), Gaps = 39/450 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
I WFR DLR+ DN AL+ A ++ V+PV+ D + F P R QFL++C
Sbjct: 3 IHWFRRDLRLRDNTALMAAATAAGGAVVPVFIFD--DAILRGRFASPA----RTQFLLDC 56
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA L L GL+L++R G P + + + GA V ++ + + +++ L+
Sbjct: 57 LAALDAELRTFGLHLVVRRGDPLRTLFDVLRESGASGVTWNRDYTPYAVRRDTAIKQALR 116
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK-----CT 257
+ + S T ++ + ++ VYT + K ++ T
Sbjct: 117 EAGYEAHSFKD------------TVIFEMKEVATADGRPYTVYTPYAKRWRSRLAAEPVT 164
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
V+ R+ + P P S PL +L + RF GE+ AL + + +
Sbjct: 165 VQDMPRLATI--PLPV-----SEPLPHLTDLLPDAPATLPRFPAGEAVALEALERFV--R 215
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
L Y + R+ ++ +++ SP+L G +SPR + V + W+ EL
Sbjct: 216 GPLASYAQGRD-LMAVAGTSRLSPYLRLGVLSPR---QCVAAALAAPPGPGPESWI-GEL 270
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRD++ + + ++L P W D LF +W+ G TGYP++DA M++L
Sbjct: 271 IWRDFYVQVLYHFPHALRGSFKPAYNRIDWPNDPVLFAAWQQGLTGYPIVDAAMRQLQRE 330
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-D 496
G+M NR R I SFL +D+ IDWR G F L+D DP +N G W + AG G D +
Sbjct: 331 GWMHNRARMIVASFLTKDLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPFF 390
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q Q +D EG YV ++P+L +P
Sbjct: 391 RIFNPVSQGQKFDPEGAYVRRYVPELVNVP 420
>gi|358460135|ref|ZP_09170324.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. CN3]
gi|357076642|gb|EHI86112.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. CN3]
Length = 463
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 126/449 (28%), Positives = 204/449 (45%), Gaps = 40/449 (8%)
Query: 87 FRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADL 146
F DLRV DN L A D +E V+P++ D + + G R +FL+ECLADL
Sbjct: 8 FTRDLRVHDNPMLTAATDEAEFVVPLFVRDTGAPRDLFGSGN------RERFLVECLADL 61
Query: 147 RKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVL 206
++L G L++R G P E + LA GA V+ + + + +R L
Sbjct: 62 DRSLRGLGGRLVVREGDPVEQVCRLADEVGAARVHIAADASAYAQRRQTTLRTAL----- 116
Query: 207 SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPS 266
++ + +H ++ ++ + + DH + V++ + + E RG + P
Sbjct: 117 -AERGRELRSHDEVHVV--VAPGRVTPVGRDHFA---VFSAYHRRWE-DAPWRGVVSPPE 169
Query: 267 SFGPPPSVVDWGSVP---------LIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
P VD G VP S F GGESA GR W
Sbjct: 170 RIRLPK--VDPGHVPPAGADGRQAGKGGSAGASAGGESASGFAGGESA--GRRRAELWLG 225
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
++ Y + R ++L D +++ SP+L G +S R + + +D + +L
Sbjct: 226 RDVEHYDD-RRDLLAEDGTSRLSPYLHLGCLSARELATQAGR-------SDGARAFVRQL 277
Query: 378 MWRD-YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
WRD Y++ ++ + + R W D + ++WR G TG P++DA M++L
Sbjct: 278 AWRDFYYQLLAARPDAAHDDYRRDRGGARDWRDDPEALDAWRSGHTGIPIVDAGMRQLLT 337
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
G++ NR R I S L + +G+DWR GA + L+D D +N NW + AG G D R
Sbjct: 338 EGWLPNRARMITASLLTKTLGLDWRAGAAHYLEHLVDGDLANNNLNWQWVAGTGTDTRPG 397
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R + +QA+ YD +G Y+ +LP+L L
Sbjct: 398 RVLNPLRQAERYDPDGIYIRRYLPELAHL 426
>gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
Length = 447
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 211/447 (47%), Gaps = 35/447 (7%)
Query: 87 FRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADL 146
F DLRV DN L A + E +P++ +D +++ + TGA R +FL E LADL
Sbjct: 7 FTRDLRVHDNPMLTAAALAGEHTVPLFVLDAAMARSGF-----ATGA-RERFLAESLADL 60
Query: 147 RKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVL 206
++L G L++R G P E + +A A V+ + E +R L +
Sbjct: 61 DRSLRELGGRLVVRAGDPVEQVCRVADEVDAGTVHLAADCSGYAQRREAALRSALAERGR 120
Query: 207 SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPS 266
+ +D++ + + G + DH + V+ + + EA R I P+
Sbjct: 121 TLHCHDEA----HVVVAPG----RVTPAGRDHYA---VFGAYHRRWEA-AGWRRVIAPPA 168
Query: 267 SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKET 326
P VD G++P I + S G F GGE+ +GR W ++ ++VY E
Sbjct: 169 RLRLP--AVDPGALPPIGG---PAGGESAGGGFHGGET--VGRRRAEEWLREGVEVYDER 221
Query: 327 RNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFI 386
R++ L D +++ SP+L G +S + + + D+ + +L WRD+F +
Sbjct: 222 RDQ-LAADATSRLSPYLHLGCLSALELATQAGT-------GDAARDFVRQLAWRDFFHQL 273
Query: 387 SLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQ 446
L + H R W D ++WR G TG P++DA M++L G++ NR R
Sbjct: 274 -LAARPAAAHEDY-RDAHRTWRDDPAALDAWRSGHTGIPIVDAGMRQLLTEGWLPNRARM 331
Query: 447 IACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQ 506
I SFL + +G+DWR GA + LLD D +N NW + AG G D R R + +QA+
Sbjct: 332 ITASFLTKTLGLDWRAGAAHYTEHLLDADVANNSLNWQWVAGTGTDTRPGRVLNPLRQAE 391
Query: 507 NYDREGEYVAYWLPQLKALPKERRNFP 533
+D +G YV +P+L LP + + P
Sbjct: 392 RFDPDGVYVRRHVPELAGLPGRQVHRP 418
>gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium fabrum str. C58]
gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium fabrum str. C58]
Length = 479
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 136/458 (29%), Positives = 205/458 (44%), Gaps = 49/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLR+ DN ALL A + V+PVY + G + +L L
Sbjct: 9 IVWFRKDLRLSDNLALLAAVEHGGPVIPVYIREKSAGPL---------GGAQEWWLHHSL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L +L G L++ G E I+ L GA V + + ++ +++ L+
Sbjct: 60 AALSSSLEKAGGRLVLASGDAERILRDLISETGADTVVWNRRYDPTGMATDKALKQKLRD 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVRGCI 262
L+ +S H +L S P VYT F +++E
Sbjct: 120 DGLTVRSFSGQLLHEPSRLQ-------------TKSGGPYRVYTPFWRALEGSDEPHAPA 166
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRVNEYFWKKD 318
P S P W + +L K F GE+ AL +++++
Sbjct: 167 DPPKSLTAPKV---WPKSEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFI--DG 221
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
LK Y+E R+ P S SP LA+G ISP ++ K R +ND + + E++
Sbjct: 222 ALKGYEEGRDFPAKPATSL-LSPHLAAGEISPAAVWHATKGLSRHIASNDISRFRK-EIV 279
Query: 379 WRDY-----FRFISL--KYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
WR++ F F L K N F + W D+K F++W G TGYP++DA M
Sbjct: 280 WREFCYHLLFHFPELGEKNWNDSFD-------AFSWRDDEKSFKAWTRGMTGYPIVDAGM 332
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L G M NR R I SFL++ + IDWR G +WF L+D DP SN NW + AG G
Sbjct: 333 RQLWQHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGA 392
Query: 492 DPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
D R F+ Q + +D +G+YV ++P+L+ L ++
Sbjct: 393 DASPFFRIFNPILQGEKFDGDGDYVRRFVPELEKLERK 430
>gi|86605487|ref|YP_474250.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86554029|gb|ABC98987.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 479
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 212/454 (46%), Gaps = 43/454 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ ++W R DLR+ DN AL A S V+PV+ DP+ Q R FL++
Sbjct: 4 LVLLWHRRDLRLGDNTALHGAAQRSPQVVPVFVFDPQLLQRA------DMAPARVAFLLQ 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L +L++ G+ LL R G P + LA GA AV+ ++ E VR +L
Sbjct: 58 ALQELQERYAQMGIPLLWRRGDPAVELRQLAAELGAQAVFWNEDLDPWARQQESRVRASL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF--DHSSLP--DVYTHFRKSIEAKCT 257
+ + S S H +++ + PF SSLP D + KS++A +
Sbjct: 118 AEAGIPSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWSSLPKPDPFP-IPKSLQAVSS 176
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
++ P PS+ D G V P GES A G + ++
Sbjct: 177 LKA--------QPLPSLADLGFV-----CNQRIP--------AAGESVAQGLLEDFC--- 212
Query: 318 DLLKVYKETRNEMLGPDYSTKF-SPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF- 375
L++++ R + T SP L G+I R +++ E E + ++ +
Sbjct: 213 QGLRIFEYGRARDFPAEQGTSLLSPHLCWGTIGIRRVWQATCEVEAEARSEEAESSLKTW 272
Query: 376 --ELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL WR++++ + + + + G R+ +W Q F++W G TGYP++DA M
Sbjct: 273 RQELCWREFYKHVLVHWPH--VESGAYRRAFDALEWDNRQDWFQAWCAGQTGYPIVDAAM 330
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ TG+M NR R I SFL +D+ IDWR G +F L+D D +N G W + AGVG
Sbjct: 331 RQLNETGWMHNRCRMIVASFLTKDLLIDWRWGERYFMQKLVDGDLAANNGGWQWSAGVGT 390
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
DPR R F+ QA YD EGEY+ +LP+L L
Sbjct: 391 DPRPLRIFNPATQAARYDPEGEYIRRYLPELAGL 424
>gi|217976568|ref|YP_002360715.1| deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
Length = 486
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 206/453 (45%), Gaps = 28/453 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
AIVWFR+DLR+ DNEAL A + +L VY ++ + GF G +L
Sbjct: 9 TAIVWFRDDLRLADNEALAAALSTGGPLLCVYILEDGTA------GFRPLGGAARWWLHH 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L +++ +G L + G+ I+P+LA++ GA + + E+ V+ ++
Sbjct: 63 SLQALGQDIAAKGGRLDLFCGEARRILPALAEAAGARIICWTRRYGGPEMAVDAALKAQF 122
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ +S KS N G ++ DI VYT + ++ A V
Sbjct: 123 K----TSGVEAKSFN--------GHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEP 170
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLEL--HSPKVSKGMRFV--GGESAALGRVNEYFWKK 317
+ P P IE L L P + G+R GE+ A R+ + +
Sbjct: 171 LPAPDRLPAAPIPRGALRTTSIEALALLPEKPDWAGGLRAAWRPGENGAQERLKAFL--E 228
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ Y RN D ++ SP L G I PR I+ V++ + A L EL
Sbjct: 229 GEIASYSLERNRP-SADAVSRLSPHLRFGEIGPRQIFAAVRT-AWDNAAQKGGVKFLAEL 286
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQ-KLFESWRDGCTGYPLIDANMKELSM 436
WR++ +S + ++ R + W + + +W+ G TGYPLIDA M+EL
Sbjct: 287 GWREFNYHLSFYHPDAARQNIQRRFDKMPWREPAPRELSAWQRGETGYPLIDAGMRELWA 346
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG+M NR R + SFL++ + IDWR+G WF L D DP +N NW + AG G D
Sbjct: 347 TGYMHNRVRMVVASFLIKHLLIDWRIGENWFWDTLCDADPANNPMNWQWVAGSGADAAPY 406
Query: 497 -RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q + +D G+YV W+P+L LP +
Sbjct: 407 FRIFNPVLQGEKFDAAGDYVRRWIPELAKLPNK 439
>gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
Length = 487
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 212/458 (46%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN AL A D V+ V+ P Q H P+ A FL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATP--VQWAAHVMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-----VYAQKETCSEELNVERLV 197
L L+ L RG+ L + + F Y+Q+ +E L + L
Sbjct: 59 LQHLQAALSARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALA 118
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ ++ + +D P L MY V+T FR++ +
Sbjct: 119 VQLSERAITCQSFHDSVLLAPGTVLTGNNEMY-------------KVFTPFRRAFIQRLL 165
Query: 258 VRG--CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYF 314
+ C+ P + PP L+ L P+ S F GE AAL R+ +
Sbjct: 166 MSDNHCVPAPKARHAPPV--------LLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC 217
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYW 372
++ ++ Y++ R+ P S SP+L G +SPR + + +S E A+ +
Sbjct: 218 --REQVQDYRQYRDLPAVPGTSC-LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFT 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L EL+WR+++R + + Y H +G L W++ + ++W+ G TGYP++DA
Sbjct: 275 WLNELIWREFYRHLLVAYPRLCQHHPFIGWTDGL--VWNRSESQLKAWQQGQTGYPIVDA 332
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++++ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 333 AMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAAST 392
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +D++G ++ WLP+L A+P
Sbjct: 393 GTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
>gi|47223394|emb|CAG04255.1| unnamed protein product [Tetraodon nigroviridis]
Length = 726
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 118/188 (62%), Gaps = 14/188 (7%)
Query: 102 AWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRH 161
A ++E ++P+YC DPRH TYH+ PKTG R +FL+E + DLRK L+N+G NL++R
Sbjct: 547 AQRNAEHIVPLYCFDPRHYAGTYHYSLPKTGPFRLRFLLESIRDLRKTLLNQGSNLIVRR 606
Query: 162 GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQL 220
GKPEE++ SL K G+ + A Q+E SEELNVE+ V+ Q+ + ++
Sbjct: 607 GKPEEVVASLIKQLGSVSTVAFQEEVTSEELNVEKRVKDVCAQLKV------------KV 654
Query: 221 KLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGS 279
WG+T+YH DD+PF H S LPDVYT FRK++E++ VR + P P P ++ G+
Sbjct: 655 HTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVESQSRVRPVLPSPERLKPLPQGLEEGA 714
Query: 280 VPLIEQLE 287
+P E LE
Sbjct: 715 IPTAEDLE 722
>gi|239986566|ref|ZP_04707230.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
11379]
Length = 451
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/439 (28%), Positives = 207/439 (47%), Gaps = 33/439 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+V F +DLR+ D+ L A ++ V+P++ D + GF R FL +CL
Sbjct: 1 MVLFTSDLRLHDHPVLRAALRDADEVVPLFVRD----DAVHRAGFDAPN--RLAFLADCL 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADL L +RG L++R G + + + GA +V+ E +R+ L
Sbjct: 55 ADLDTGLRDRGGRLIVRRGGTAREVKRVVEQTGADSVHIAAGVSGYAAQREERIREALAG 114
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ +D T + +P V+T + + EA+ VRG +
Sbjct: 115 TGCELRVHDAVV----------TALAPGRVVPTGGKDHFAVFTPYFRRWEAEG-VRGTLA 163
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVY 323
P + P V ++P + ++ SP +++G GE A GR W + Y
Sbjct: 164 APRTVRVPDGVSG-DALPDRDAVKGVSPGLARG-----GEEA--GRKLVTSWLHGPMAAY 215
Query: 324 KETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYF 383
++ +++ G D +++ SP L G++S E+ + RE+ +V +L WRD+
Sbjct: 216 EDGHDDLAG-DATSRLSPHLHFGTVSA----AELANRAREKGGPGGEAFVR-QLAWRDFH 269
Query: 384 RFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNR 443
+ ++ + PR +W D+ E+W+ G TGYPL+DA M++L+ G+M NR
Sbjct: 270 HQVLAARPDASWSDYRPR--HDRWRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNR 327
Query: 444 GRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPK 503
GR + SFL + + +DWR+GA F L+D D +N NW + AG G D R +R +
Sbjct: 328 GRMLTASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNPVI 387
Query: 504 QAQNYDREGEYVAYWLPQL 522
Q + +D +G YV W+P+L
Sbjct: 388 QGKRFDPDGAYVRRWVPEL 406
>gi|335035151|ref|ZP_08528494.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
gi|333793582|gb|EGL64936.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
Length = 479
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 207/462 (44%), Gaps = 57/462 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLR+ DN ALL A + V+PVY + G + +L L
Sbjct: 9 IVWFRKDLRLSDNLALLAAVEHGGPVIPVYIREKSAGPL---------GGAQEWWLHHSL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L +L G L++ G E I+ L GA V + + ++ ++ L+
Sbjct: 60 AALSSSLEKAGGRLVLASGDAERILRDLISETGADTVVWNRRYDPTGMATDKAFKQKLRD 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIE------AKC 256
L+ QS H +L S P VYT FR+++E A
Sbjct: 120 DGLTVQSFSGQLLHEPSRLQ-------------TKSGGPYRVYTPFRRALEGGEEPHAPA 166
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYF 314
++ P + + DW +P P +K + GE+ A +++++
Sbjct: 167 DAPKSLKAPEVWPKSEKLADWKLLPT-------KPDWAKDFSDIWTPGENGAKDKLDDFI 219
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
LK Y+E R+ P S S LA+G ISP ++ K R +ND + +
Sbjct: 220 --DGALKGYEEGRDFPAKPATSL-LSSHLAAGEISPAAVWHATKGLSRHIASNDISRFRK 276
Query: 375 FELMWRDY-----FRFISL--KYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLI 427
E++WR++ F F L K N F + W D+ F++W G TGYP++
Sbjct: 277 -EIVWREFCYHLLFHFPELDEKNWNDSFD-------AFPWRDDETSFKAWTRGMTGYPIV 328
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L G M NR R I SFL++ + IDWR G +WF L+D DP SN NW + A
Sbjct: 329 DAGMRQLWQHGIMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVA 388
Query: 488 GVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G G D R F+ Q + +D +G+YV ++P+L+ L ++
Sbjct: 389 GSGADASPFFRIFNPILQGEKFDGDGDYVRRFVPELEKLERK 430
>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
Length = 475
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 220/467 (47%), Gaps = 55/467 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A S ++ ++C+DP + + R +++
Sbjct: 4 LILFWHRRDLRISDNMGLAAARKQSSKIVGLFCLDPNILNSN------EVAPARVTYMLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L+++ G LLI G+P E IP LA + V+ K+ E ER +
Sbjct: 58 CLQELKESYSKIGSQLLIVRGEPIEAIPQLAVALQVTGVFWHKD--GEPYARER--DGKV 113
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+Q +L + TN+ W ++ +DI VYT F K+ K +
Sbjct: 114 EQELL--KQGIAVTNY------WDQLLHPPEDILTQSGKPYTVYTPFWKNWSQKPKLEVA 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF--------VGGESAALGRVNEY 313
++ G + + + ++ + S K + + GE+AA ++ E+
Sbjct: 166 EKLDRIQG-----LTAEEIKIAQETGVVSLPTGKDLGYYWDGELILTPGETAAREQLEEF 220
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV-----KSYERERVAND 368
+ + Y+E RN + ++ SP L G I R +++ SY E AN
Sbjct: 221 --SERAIAQYQEQRN-FPAVEGTSLLSPALRFGVIGIRTVWQATLEATKNSYSEEVRANI 277
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGG----PRKLEYK---WSQDQKLFESWRDGC 421
T+ EL WR++ Y ++L+H P + ++K W + + F++W +G
Sbjct: 278 ETW--QKELAWREF-------YQHALYHFPQLTVEPYRQQFKDFPWDNNPEHFQAWCEGK 328
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TGYP++DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D SN G
Sbjct: 329 TGYPMVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEQYFMQKLCDGDLASNNG 388
Query: 482 NWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
W + A G DP+ R F+ QA+ +D EGEY+ WLP+L ++ E
Sbjct: 389 GWQWSASCGMDPKPLRIFNPASQAKKFDPEGEYIRQWLPELSSIDTE 435
>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
Length = 479
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/460 (26%), Positives = 218/460 (47%), Gaps = 40/460 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A S V+ V+C+DP + R ++I
Sbjct: 4 LVLFWHRRDLRIADNIGLAAARQQSSKVVGVFCLDPNILERD------DVAPARVTYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L +L++ + G LLI HG P + IP LA++ A AV+ + +R + L
Sbjct: 58 SLQELQQRYVQAGSQLLILHGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILDIL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ DK L W ++ D+I ++ VYT F K+ +K +
Sbjct: 118 K---------DKGIQF--LTHKWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPV 166
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF--------VGGESAALGRVNEY 313
+ ++ G S + L ++ + + +K + F GE+AA ++ E+
Sbjct: 167 ETLQNAEGLTESEQE-----LAQKAGVKTLPTAKDLGFFWDADLIIAPGEAAAQAKLEEF 221
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDST 370
K + Y+E RN D +++ S L G I R +++ E R A+ +
Sbjct: 222 TAKA--ITEYQEQRN-FPAVDGTSQLSAALKFGVIGIRTVWQATLEALENSRSEEASAAI 278
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLID 428
EL WR++++ Y G R+ + W +++ F++WR+G TGYP++D
Sbjct: 279 RTWQQELAWREFYQHA--MYNFPELADGAYRETFKNFPWETNEEHFQAWREGKTGYPIVD 336
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++++ +G+M NR R I SFL +D+ I+ ++G ++F L+D D +N G W + A
Sbjct: 337 AAMRQMNESGWMHNRCRMIVASFLTKDLLINPQLGEKYFMQKLIDGDLSANNGGWQWSAS 396
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G DP+ R F+ Q+Q +D + EY+ W+P+L+++ E
Sbjct: 397 SGMDPKPLRIFNPASQSQKFDPDAEYIRRWVPELRSMDTE 436
>gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
Length = 480
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 214/458 (46%), Gaps = 38/458 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLR+ DN AL A + V+PVY +D G + G +L L
Sbjct: 9 IVWFRQDLRLADNPALQAAAATGAPVIPVYILDDDAP------GDWRPGGASRWWLHHSL 62
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L +L G L + G+ +E + +L + GA V+ + + ++ +L+
Sbjct: 63 ASLASDLQQLGGELALMKGEAQEQLDALIEQTGADTVFWNRLYEPWARKRDEAIKSSLKD 122
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++S + G+ + DI + V+T F KS++A T
Sbjct: 123 RGVRARSFN------------GSLIVEPWDIATKTGNPYKVFTPFWKSLKADHTPAEPTG 170
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKKDLLK 321
P + + G L P S G++ + GE+AA GR+ ++ K +
Sbjct: 171 RPDALQL--HAHEGGLSLDDLDLLPTKPDWSGGLQENWTPGEAAAHGRLGQFL--KAAVS 226
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
Y + R ++ G +++ SP L G ISPR ++ VK + R TY L E+ WR+
Sbjct: 227 DYSD-RRDLPGQSGTSRLSPHLHFGEISPRQVWHAVKQSDHARTGGADTY--LSEIAWRE 283
Query: 382 Y-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
+ + F L N ++W + + ++W+ G TGYP++DA M+EL
Sbjct: 284 FSYNLLYHFPDLPEANFQSKFDA-----FEWDECEDKLKAWQKGQTGYPIVDAGMRELWA 338
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG+M NR R I SFL++D+ I WR G +WF L+D D SN +W + AG G D
Sbjct: 339 TGWMHNRVRMIVASFLIKDLFIHWRRGEDWFWDTLVDADLASNAASWQWTAGSGADAAPY 398
Query: 497 -RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q++ +D +G+Y+ W+P+L LP + + P
Sbjct: 399 FRVFNPVGQSEKFDPKGDYLRKWIPELADLPDKVIHAP 436
>gi|420822431|ref|ZP_15290112.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
gi|391695682|gb|EIT28232.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
Length = 480
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 212/458 (46%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN AL A D V+ V+ P Q H P+ A FL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATP--VQWAAHGMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-----VYAQKETCSEELNVERLV 197
L L+ L RG+ L + + F Y+Q+ +E L + L
Sbjct: 59 LQHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALA 118
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ ++ + +D P L MY V+T FR++ +
Sbjct: 119 VQLSERAITCQSFHDSVLLAPGTVLTGNNEMY-------------KVFTPFRRAFIQRLL 165
Query: 258 VRG--CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYF 314
+ C+ P + PP L+ L P+ S F GE AAL R+ +
Sbjct: 166 MSDNHCVPAPKARHAPPV--------LLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC 217
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYW 372
++ ++ Y++ R+ P S SP+L G +SPR + + +S E A+ +
Sbjct: 218 --REQVQDYRQYRDLPAVPGTSC-LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFT 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L EL+WR+++R + + Y H +G L W++ + ++W+ G TGYP++DA
Sbjct: 275 WLNELIWREFYRHLLVAYPRLCQHHPFIGWTDGL--VWNRSESQLKAWQQGQTGYPIVDA 332
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++++ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 333 AMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAAST 392
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +D++G ++ WLP+L A+P
Sbjct: 393 GTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
>gi|346325901|gb|EGX95497.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Cordyceps
militaris CM01]
Length = 772
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 142/499 (28%), Positives = 238/499 (47%), Gaps = 65/499 (13%)
Query: 71 TSKALKRNGKGVAIV-WFRNDLRVLDNEAL-LKAWDSSEMVLPVYC---VDPRHSQTTYH 125
T++A+K+ KG AI WF+ DLR DN +L L A + EM +P+ C V P+ + H
Sbjct: 218 TAEAMKKATKGEAIAHWFKTDLRCTDNTSLALAAQKAKEMDVPLVCFYLVSPQDFKA--H 275
Query: 126 FGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPS----LAKSFGAHAVY 181
P +R F++ L LR +L + L + + IP L S+G + +
Sbjct: 276 LRSP----VRIDFILRTLQVLRDDLAKLDIPLYVETVEERAEIPGRVLELLDSWGCNHLC 331
Query: 182 AQKETCSEELNVERLVRKNLQQ------------VVLSSQSNDKSTNHPQLKLIWGTT-M 228
A E +EL E + + L + VV Q + N + W T M
Sbjct: 332 ANLEYEVDELRRETKLLRLLAEKGKSFEAVHDTCVVPPGQLRSGTGNQYAVYTPWYRTWM 391
Query: 229 YHLD---DIPFDHSSLPDVYTHFRKSIEA--KCTVRGCIRIPSSFGPPPSVVDWGSVPLI 283
H+ D+ H S P RK + C + P+ +
Sbjct: 392 AHIHSNLDLLELHDSPPKNPASARKKFQKLFNCEI-------------PAAAKGKELSAE 438
Query: 284 EQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWL 343
E+ H+ + GE A R++++ ++ + Y E RN + + ++ S L
Sbjct: 439 EKKRFHA-------LWPCGEHEAKARLDKFC--EERIGEYSEKRN-VPSDNGTSSLSVHL 488
Query: 344 ASGSISPRYIYEEVKSYERERVAN---DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGP 400
ASG+IS R + + + + D + E+ WRD++R + +++ + + P
Sbjct: 489 ASGTISARTCVRTARDRNKSKKLDGGLDGIKVWISEVAWRDFYRHVLVRWPHVC--MNKP 546
Query: 401 RKLEY---KWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMG 457
K +Y +WS D + F++W +G TG+P++DA M++L+ TG+M NR R + SFL +D+
Sbjct: 547 YKPDYADIEWSYDTEHFKAWCEGKTGFPIVDAAMRQLNHTGYMHNRTRMVVASFLAKDLL 606
Query: 458 IDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVA 516
IDWRMG ++F L+D D SN G W + A VG DP+ R F+ +Q++ +D +GEY+
Sbjct: 607 IDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNPLRQSERFDADGEYIR 666
Query: 517 YWLPQLKALPKERRNFPGG 535
+W+P+LK L ++ + P G
Sbjct: 667 HWVPELKDLDNKQIHDPYG 685
>gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
PB1/+]
gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+]
Length = 487
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 138/458 (30%), Positives = 220/458 (48%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN AL A D V+ V+ P Q H P+ A FL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATP--VQWAAHGMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-----VYAQKETCSEELNVERLV 197
L L+ L RG+ L + + F Y+Q+ ELN ERL
Sbjct: 59 LQHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQY----ELN-ERL- 112
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
R + V LS ++ + H + L GT + ++ + V+T FR++ +
Sbjct: 113 RDDALAVQLSGRAITCQSFHDSVLLAPGTVLT-------GNNEMYKVFTPFRRAFIQRLL 165
Query: 258 VRG--CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYF 314
+ C+ P + PP L+ L P+ S F GE AAL R+ +
Sbjct: 166 MSDNHCVPAPKTRHAPPV--------LLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC 217
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYW 372
++ ++ Y++ R+ P S SP+L G +SPR + + +S E A+ +
Sbjct: 218 --REQVQDYRQYRDLPAVPGTSC-LSPYLVLGVLSPRQCFNRLWAESPEMLESADSGAFT 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L EL+WR+++R + + Y H +G L W++ + ++W+ G TGYP++DA
Sbjct: 275 WLNELIWREFYRHLLVAYPRLCQHHPFIGWTDGL--VWNRSESQLKAWQQGQTGYPIVDA 332
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++++ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 333 AMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAAST 392
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +D++G ++ WLP+L A+P
Sbjct: 393 GTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
>gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM10+]
gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus
str. 91001]
gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516]
gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1]
gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|384122926|ref|YP_005505546.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|384126809|ref|YP_005509423.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|384139466|ref|YP_005522168.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|384415591|ref|YP_005624953.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420553020|ref|ZP_15050328.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|420558580|ref|ZP_15055192.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|420564034|ref|ZP_15060048.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|420569077|ref|ZP_15064628.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|420574726|ref|ZP_15069742.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|420580056|ref|ZP_15074582.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|420585384|ref|ZP_15079413.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|420590518|ref|ZP_15084031.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|420595913|ref|ZP_15088884.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|420601535|ref|ZP_15093889.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|420606977|ref|ZP_15098798.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|420612394|ref|ZP_15103667.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|420617756|ref|ZP_15108361.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|420623037|ref|ZP_15113090.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|420628142|ref|ZP_15117725.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|420633265|ref|ZP_15122327.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|420638464|ref|ZP_15126998.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|420643927|ref|ZP_15131964.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|420649220|ref|ZP_15136767.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|420654878|ref|ZP_15141852.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|420660347|ref|ZP_15146762.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|420665638|ref|ZP_15151502.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|420670533|ref|ZP_15155959.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|420675883|ref|ZP_15160827.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|420681492|ref|ZP_15165902.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|420686803|ref|ZP_15170634.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|420697804|ref|ZP_15180306.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|420703521|ref|ZP_15184921.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|420708992|ref|ZP_15189669.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|420714448|ref|ZP_15194540.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|420719947|ref|ZP_15199279.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|420725437|ref|ZP_15204083.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|420731042|ref|ZP_15209109.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|420736060|ref|ZP_15213644.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|420741538|ref|ZP_15218567.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|420747183|ref|ZP_15223377.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|420752691|ref|ZP_15228251.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|420758346|ref|ZP_15232871.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|420763706|ref|ZP_15237496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|420768947|ref|ZP_15242208.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|420773944|ref|ZP_15246722.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|420779527|ref|ZP_15251652.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|420785120|ref|ZP_15256548.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|420790313|ref|ZP_15261192.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|420795823|ref|ZP_15266149.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|420800878|ref|ZP_15270687.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|420806252|ref|ZP_15275550.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|420811580|ref|ZP_15280347.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|420817125|ref|ZP_15285344.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|420827514|ref|ZP_15294673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|420833231|ref|ZP_15299841.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|420838075|ref|ZP_15304220.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|420843257|ref|ZP_15308919.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|420848911|ref|ZP_15314004.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|420854494|ref|ZP_15318773.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|420859777|ref|ZP_15323386.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|421764191|ref|ZP_16200983.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia
pestis KIM10+]
gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Microtus str. 91001]
gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516]
gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342854595|gb|AEL73148.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|391425862|gb|EIQ88096.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|391426528|gb|EIQ88704.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|391439765|gb|EIR00390.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|391441270|gb|EIR01775.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|391444732|gb|EIR04924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|391456609|gb|EIR15620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|391457600|gb|EIR16526.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|391459970|gb|EIR18708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|391472759|gb|EIR30190.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|391474551|gb|EIR31831.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|391475170|gb|EIR32394.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|391488956|gb|EIR44747.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|391490139|gb|EIR45813.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|391491571|gb|EIR47119.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|391504403|gb|EIR58496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|391505077|gb|EIR59114.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|391509951|gb|EIR63528.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|391520393|gb|EIR72946.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|391522601|gb|EIR74982.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|391523660|gb|EIR75952.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|391535615|gb|EIR86673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|391538245|gb|EIR89065.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|391540465|gb|EIR91089.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|391553518|gb|EIS02837.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|391553991|gb|EIS03271.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|391554886|gb|EIS04092.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|391569662|gb|EIS17221.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|391575381|gb|EIS22105.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|391582438|gb|EIS28195.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|391585186|gb|EIS30620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|391595896|gb|EIS39892.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|391598485|gb|EIS42198.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|391599985|gb|EIS43553.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|391612885|gb|EIS54907.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|391613474|gb|EIS55439.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|391617393|gb|EIS58941.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|391625715|gb|EIS66174.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|391632048|gb|EIS71614.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|391636532|gb|EIS75549.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|391638938|gb|EIS77685.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|391648656|gb|EIS86143.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|391652615|gb|EIS89658.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|391657171|gb|EIS93708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|391661578|gb|EIS97608.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|391669556|gb|EIT04679.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|391678828|gb|EIT13013.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|391679816|gb|EIT13915.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|391680593|gb|EIT14621.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|391692750|gb|EIT25559.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|391697437|gb|EIT29832.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|391708633|gb|EIT39878.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|391713085|gb|EIT43895.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|391713730|gb|EIT44474.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|391725197|gb|EIT54686.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|391726962|gb|EIT56244.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|391729089|gb|EIT58115.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|411175505|gb|EKS45531.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
Length = 487
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 212/458 (46%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN AL A D V+ V+ P Q H P+ A FL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATP--VQWAAHGMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-----VYAQKETCSEELNVERLV 197
L L+ L RG+ L + + F Y+Q+ +E L + L
Sbjct: 59 LQHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALA 118
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ ++ + +D P L MY V+T FR++ +
Sbjct: 119 VQLSERAITCQSFHDSVLLAPGTVLTGNNEMY-------------KVFTPFRRAFIQRLL 165
Query: 258 VRG--CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYF 314
+ C+ P + PP L+ L P+ S F GE AAL R+ +
Sbjct: 166 MSDNHCVPAPKARHAPPV--------LLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC 217
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYW 372
++ ++ Y++ R+ P S SP+L G +SPR + + +S E A+ +
Sbjct: 218 --REQVQDYRQYRDLPAVPGTSC-LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFT 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L EL+WR+++R + + Y H +G L W++ + ++W+ G TGYP++DA
Sbjct: 275 WLNELIWREFYRHLLVAYPRLCQHHPFIGWTDGL--VWNRSESQLKAWQQGQTGYPIVDA 332
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++++ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 333 AMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAAST 392
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +D++G ++ WLP+L A+P
Sbjct: 393 GTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
>gi|39936242|ref|NP_948518.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
CGA009]
gi|39650097|emb|CAE28620.1| Deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
CGA009]
Length = 483
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 145/491 (29%), Positives = 221/491 (45%), Gaps = 59/491 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR+DLR+ D+ AL A S VL VY +D S G GA+R +L + L
Sbjct: 11 IVWFRDDLRLADHPALHAAAQSGAPVLCVYVLD-EVSDDVRALG----GAVR-WWLAQSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L L G L++R G ++ LA+ A AV+ + +E + +
Sbjct: 65 RALESELRALGGALILRRGPTAAVLAELAQQHDAAAVHWNE--------IEIAAHRAVAD 116
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + + H G T+ I V+T F + + + +
Sbjct: 117 ALADALTVAGIAYHRHR----GDTLVEPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQPLP 172
Query: 264 IPSSFGPPPSV-----VDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWK 316
P++ P P+V DW QLE +P + G+R + GE+AA R+ +
Sbjct: 173 RPTTLRPAPAVPTEQLSDW-------QLEPTAPDWAGGLRQTWTPGEAAAQTRLAAFL-- 223
Query: 317 KDLLKVYKETRNEMLGPD--YSTKFSPWLASGSISPRYIYEEVK--SYERERVANDSTYW 372
+ Y E R+ PD ++ SP L G ISPR ++ + + ER +A D
Sbjct: 224 -AMQPGYAEGRDY---PDRHITSGLSPHLRFGEISPRQVWYAARFAAAERPAIAPDIDK- 278
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
L E+ WR++ R + + + P + W D + +W+ G TGYP++DA M+
Sbjct: 279 FLSEVGWREFCRHLLFDHPDLASRNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMR 338
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL +G M NR R + SFLV+ + IDWR+G +WF L+D DP SN GNW + AG G D
Sbjct: 339 ELWHSGVMHNRVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGAD 398
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------------GGS 536
R F+ Q++ +D G Y+ W+P+L LP + + P GG+
Sbjct: 399 AAPYFRVFNPVLQSEKFDAGGAYIRRWVPELARLPNDLIHQPWTATPLELAAAGIKLGGN 458
Query: 537 YIEQIVSLKHG 547
Y IV K G
Sbjct: 459 YPGPIVDHKTG 469
>gi|418296029|ref|ZP_12907873.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539461|gb|EHH08699.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 479
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 205/461 (44%), Gaps = 53/461 (11%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AIVWFR DLR+ DN ALL A + V+PVY + G + +L
Sbjct: 8 AIVWFRKDLRLSDNLALLAAVEHGGPVIPVYVREKSCGPL---------GGAQEWWLHHS 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA L L G L++ G E + L GA AV+ + + ++ +++ L+
Sbjct: 59 LACLSAALEKTGSRLVLASGDAGETLRQLISETGADAVFWNRRYDPAGMATDKALKQKLR 118
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVRGC 261
L+ +S H +L S P VYT F +++E
Sbjct: 119 DDGLTVRSFSGHLLHEPSRLQ-------------TKSGGPYRVYTPFWRALEGGEEPHAP 165
Query: 262 IRIPSSFGPPPS------VVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
P S P + + DW +P H + + GE A +++++
Sbjct: 166 ADAPKSLKAPKAWLESEKLSDWKLLPTKPDWAKHFSDI-----WAPGEGGAQEKLDDFI- 219
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
LK Y+E R+ D ++ SP LA G ISP ++ K R +ND + +
Sbjct: 220 -DGALKGYEEGRD-FPAKDATSMLSPHLALGEISPATVWHATKGLSRHIASNDISRFRK- 276
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKL-------EYKWSQDQKLFESWRDGCTGYPLID 428
E++WR++ + LFH G + + W D+ F++W G TGYP++D
Sbjct: 277 EIVWREFCYHL-------LFHFPGLDEKNWNESFDAFGWRDDETSFKAWTRGMTGYPIVD 329
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L G M NR R I SFL++ + IDWR G +WF L+D DP SN NW + AG
Sbjct: 330 AGMRQLWKHGTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAG 389
Query: 489 VGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D R F+ Q + +D +G YV ++P+L+ L ++
Sbjct: 390 SGADASPFFRIFNPILQGEKFDADGNYVRRFVPELEKLDRK 430
>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
Length = 477
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/455 (27%), Positives = 217/455 (47%), Gaps = 29/455 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVW R DLR+ D+ AL +A ++ ++P++ +D F G F++E L
Sbjct: 5 IVWHRRDLRIFDHSALAEAAKFADEIIPIFILDDDILLRREDFSPACVG-----FMLESL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L + N G L++R G+ E++ SL A A+Y ++ ++ V+ ++
Sbjct: 60 EALALSYANIGGKLIVRRGQVLEVLKSLVGETRAQAIYFNEDYEPFAKMRDQAVQSEFEK 119
Query: 204 VVLSSQS-NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + ++ D+ HPQ L D+ V+T ++K A + G I
Sbjct: 120 LGVRVKAFTDQVCFHPQRVLK-------------DNGQPYTVFTPYQKKWLA---LSGNI 163
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
P S + S+PL + ++ K S GGE L R+ + + +
Sbjct: 164 PTPQPALTRISTPELPSIPLPKTSDIRK-KFSVQPIVQGGEPKGLKRLRAFLSQN--IYH 220
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY--ERERVANDSTYWVLFELMWR 380
YKE R+ + ++ S L G++S R+++ E + A + + EL+WR
Sbjct: 221 YKELRD-FPATNATSLLSADLRFGTLSIRHVFHESMRLVPQASEPAREGIQTFISELIWR 279
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
+++ I + + H P KW ++ FE+W++G TGYP++DA M+ L TG+M
Sbjct: 280 EFYFQILDHFPHVEKHSFKPEFENLKWENNEVFFEAWKNGQTGYPIVDAAMRALRQTGWM 339
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYF 499
NR R I SFL +D+ IDWR G +F L+D D +N G W + A G D + R F
Sbjct: 340 HNRLRMIVASFLTKDLLIDWRWGELYFMQHLIDGDLAANNGGWQWSASTGTDAQPYFRIF 399
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPG 534
+ Q+Q +D +GE++ ++P+L+A+P +FP
Sbjct: 400 NPVLQSQKFDPKGEFIRKYVPELQAVPVRYIHFPA 434
>gi|187921432|ref|YP_001890464.1| deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
Length = 499
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 137/482 (28%), Positives = 219/482 (45%), Gaps = 42/482 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ---TTYHFGFPKTGAL--RA 136
+VWFR DLR DN AL A E V V+ D Q + P T R
Sbjct: 13 TGLVWFRRDLRSTDNAALYYALKHCERVWCVFVFDTTILQPLVEAWQARHPDTQPQDRRI 72
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+ ++ L +L + L G L++ +G P +++P LA G AV+A + + +
Sbjct: 73 ELILGALGELDEALRANGGGLIVLYGDPADLVPKLADELGVDAVFANHDYEPVAIARDET 132
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
VR+ L + Q ++ D++ + V+T ++ + +
Sbjct: 133 VRETLAEA------------GRQWLTFKDQVIFERDEVLTGQNKPFTVFTPYKNAWLKQL 180
Query: 257 TVRGCIRIP-----SSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
T P PPS +D +P ++QL +P + G S A ++
Sbjct: 181 TAFDLKPYPVESYTKHLAAPPSKLD-RRLPTLDQLGF-APSNLAELDLPAGMSGAQRLLD 238
Query: 312 EYFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
++ + D YK+ R+ GP Y S L G++S R + + S
Sbjct: 239 DFATRID---SYKDRRDFPAAKGPSY---LSIHLRFGTVSIRTLARLAHEMSLQPDGEGS 292
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQD---QKLFESWRDGCTG 423
T W L EL+WRD++ F+ L + L + G K EY +W Q + F +W DG TG
Sbjct: 293 TTW-LSELIWRDFY-FMILAHHPRLAN-GASFKEEYDQLRWEQGPEADEAFAAWCDGRTG 349
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YPL+DA M +L+ TG+M NR R + SFLV+D+G+DWR+G +F L D+D +N G W
Sbjct: 350 YPLVDAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAQQLNDFDFSANNGGW 409
Query: 484 TYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIV 542
+ A G D + R F+ Q++ +D EG ++ +LPQL LP + + P + E++
Sbjct: 410 QWAASTGCDAQPYFRIFNPITQSEKFDAEGRFIKRYLPQLARLPSKWIHAPWLAGTERLA 469
Query: 543 SL 544
Sbjct: 470 EF 471
>gi|347528151|ref|YP_004834898.1| deoxyribodipyrimidine photo-lyase [Sphingobium sp. SYK-6]
gi|345136832|dbj|BAK66441.1| deoxyribodipyrimidine photo-lyase [Sphingobium sp. SYK-6]
Length = 458
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 212/451 (47%), Gaps = 46/451 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+W R DLR+ D ALL A + V+PVY +D +T H + GA +L L
Sbjct: 6 ILWLRRDLRLGDQAALLAA-CAEGPVVPVYVLD---DETPDHR---RMGAASRWWLHGSL 58
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L +L G L++R G+ +E++P+LA+ GA V+A N ER + + L
Sbjct: 59 ASLAGDLRASGSRLVLRRGRADEVLPALAREVGARRVHALHHYEPWWRNAERAIARVLDL 118
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V+ +D + HP L G+ + PF + R+++ + +
Sbjct: 119 VL-----HDGNYLHPPGLLKSGSGSPYRIFTPF--------WRALRETMPPPEPMARPDK 165
Query: 264 IPSSFGPPPS--VVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKKDL 319
IP+ P S + DW L SP + GM + GE AL R+ + D
Sbjct: 166 IPAPSSWPASEHLDDW-------SLRPSSPDWATGMARAWQPGEQGALDRLEAF---ADS 215
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
Y RN + + S++ SP L G ISP I+ + R Y L EL W
Sbjct: 216 AGDYDIARN-LPSVEGSSRLSPHLHFGEISPSLIWHRIA----RRDGRTEPY--LRELAW 268
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKL---FESWRDGCTGYPLIDANMKELSM 436
RDY + + L++ G + ++ W ++ FE+W+ G TGYP++DA M++L
Sbjct: 269 RDYAQTVILQHPRHGSANGRAQFDDFPWRDLREAASDFEAWKRGRTGYPIVDAGMRQLWT 328
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG+M NR R IA SFLV+ + IDWR G +WF L+D D +N NW + AG G D
Sbjct: 329 TGWMHNRVRMIAASFLVKHLLIDWRHGEQWFWDTLIDADYGNNSVNWQWVAGTGIDSSMF 388
Query: 497 RYFSIP-KQAQNYDREGEYVAYWLPQLKALP 526
P Q+ +D +Y+ W+P+L LP
Sbjct: 389 VRIMAPLGQSAKFD-AADYIRRWVPELAGLP 418
>gi|425701283|gb|AFX92445.1| deoxyribodipyrimidine photolyase [Megavirus courdo11]
Length = 471
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/462 (26%), Positives = 226/462 (48%), Gaps = 54/462 (11%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
++I FR DLR+ DN +LL A S+ V+P++ P +Q + + ++ QF+I
Sbjct: 6 NISIHIFRRDLRLEDNTSLLLALQESKYVIPLFIFTP--TQVSEKNKLKSSNSI--QFMI 61
Query: 141 ECLADLRK--NLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
E L DL N +++ L L +G ++I + K+ A+Y + + ++ ++
Sbjct: 62 ESLYDLNSQINFLDKKLRLWTTYGNEIDVIDEIHKNINVSAIYINDDYTPYSIKRDKKIQ 121
Query: 199 K--NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
+ Q ++L+ ++ T+ + G ++ +++K+I
Sbjct: 122 NYCDQQNIILNISTDILLTDTLDIAANNGNRYHNFG-------------LYYKKAINI-I 167
Query: 257 TVRGCIRIPSSFGPPPSVVD-WGSVPLIEQLELHSPKVSKGMRFVGGESAAL--GRVNEY 313
+ + ++F P + W IE ++++ + +V ++ A+ GR N
Sbjct: 168 VRKPSYNVTNNFLIPTKIFKKWT----IENMDIY---LLDNFYYVPNKNLAVNGGRENGL 220
Query: 314 FWKKDLLKV--YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV-KSYERERVANDST 370
++ LK YK +N + +T+ S G+IS R +Y++ K+ E
Sbjct: 221 QILENNLKFKNYKTDKNNISIK--TTRLSAHNKFGTISIREVYQKFNKNIE--------- 269
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFH----LGGPRKLEY-KWSQDQKLFESWRDGCTGYP 425
++ L WRD++ ++S+ + + + P KW ++K FE+W++GCTG+P
Sbjct: 270 --IIKNLYWRDFYYYVSVHFYDRFYSYQHIFKNPTTKNLPKWENNKKYFEAWKNGCTGFP 327
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M+EL+ TGFM NRGR I FL++D+ +DW+ G ++F L+D D N GNW +
Sbjct: 328 IVDAAMRELNTTGFMHNRGRLITSQFLIKDLLVDWKYGEKYFSKKLVDIDRVQNLGNWNW 387
Query: 486 GAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
A G D R F+ Q++ YD + EY+ YW+P+L +P
Sbjct: 388 SASYGLDSSPYLRIFNPWSQSRTYDPDCEYIKYWIPELLNIP 429
>gi|326780339|ref|ZP_08239604.1| Deoxyribodipyrimidine photo-lyase [Streptomyces griseus XylebKG-1]
gi|326660672|gb|EGE45518.1| Deoxyribodipyrimidine photo-lyase [Streptomyces griseus XylebKG-1]
Length = 455
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 206/441 (46%), Gaps = 33/441 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
VA+V F +DLR+ DN L A ++ V+P++ D + GF R FL +
Sbjct: 3 VAVVLFTSDLRLHDNPVLRAALRDADEVVPLFVRD----DAVHRAGFDAPN--RLAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CLA L L +RG L++R G+ + +A+ GA V+ E+ +R+ L
Sbjct: 57 CLAALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREAL 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+D T + +P V+T + + EA+ VRG
Sbjct: 117 ADTGRELHVHDAVV----------TALAPGRVVPTGGKDHFAVFTPYFRRWEAEG-VRGT 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ P + P V +P + ++ SP +++G GE A GR W +
Sbjct: 166 LTAPRTVRVPDGVAS-DPLPDRDSVKNLSPGLARG-----GEEA--GRKLVTSWLNGPMA 217
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
Y++ +++ G D +++ SP L G++S E+ RE+ +V +L WRD
Sbjct: 218 DYEDGHDDLAG-DATSRLSPHLHFGTVSA----AELVHRAREKGGLGGEAFVR-QLAWRD 271
Query: 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+ + ++ + PR +W D ++W+ G TGYPL+DA M++L+ G+M
Sbjct: 272 FHHQVLADRPDASWSDYRPR--HDRWRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMH 329
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
NR R +A SFL + + +DWR+GA F L+D D +N NW + AG G D R +R +
Sbjct: 330 NRARMLAASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNP 389
Query: 502 PKQAQNYDREGEYVAYWLPQL 522
Q + +D G+YV W+P+L
Sbjct: 390 VIQGKRFDARGDYVRRWVPEL 410
>gi|386824611|ref|ZP_10111744.1| deoxyribodipyrimidine photolyase [Serratia plymuthica PRI-2C]
gi|386378568|gb|EIJ19372.1| deoxyribodipyrimidine photolyase [Serratia plymuthica PRI-2C]
Length = 476
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/455 (27%), Positives = 213/455 (46%), Gaps = 41/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN+AL A D + VL V+ P Q H P+ A F+
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPTARVLAVFIATP--GQWRQHQMAPRQAA----FIHAN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH----AVYAQKETCSEELNVERLVR 198
L +++ L +RG+ L+ ++ A A++ ++ EL +R
Sbjct: 59 LLQVQQALADRGIPLVCHQCDDFAAAIDWLVAYCAQERVDALFYNRQHEINELRRDRQAE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ L V+ +D P G MY +YT FRK+ + +
Sbjct: 119 RRLSGQVICQSFDDSLLLPPGSVQTGGGEMYK-------------IYTPFRKAFIQRLSE 165
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPL-IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+P+ P + G++P+ P G F GE AAL R+ + +
Sbjct: 166 FDVRSLPA-----PKPREGGALPVSAAPAAFDYPSAGVGADFPAGEEAALQRLRVFC--R 218
Query: 318 DLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST--YWV 373
+ ++ Y + R+ + G ++ SP+LA G +SPR + +++ + + N + +
Sbjct: 219 EQVQDYLQQRDFPAIAG---TSSLSPYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGW 275
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + + Y H + +W + L +W+ G TGYP++DA M+
Sbjct: 276 LNELIWREFYRHLMVAYPALCRHRPFIEWTDKVRWRDNDALLLAWQQGATGYPIVDAAMR 335
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I+ SFLV+D+ IDWR G +F + LLD D +N G W + A G D
Sbjct: 336 QLNKTGWMHNRLRMISASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTD 395
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D +G ++ WLP+L +P
Sbjct: 396 AAPYFRIFNPTTQGERFDPQGTFIRKWLPELADVP 430
>gi|118617507|ref|YP_905839.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
gi|118569617|gb|ABL04368.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
Length = 447
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 143/457 (31%), Positives = 212/457 (46%), Gaps = 70/457 (15%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A++WFR DLR+ D+ AL A DS E VL + VDPR ++ G R QFL +
Sbjct: 4 ALLWFRRDLRLGDHPALAAAADSEE-VLACFVVDPRLEASS--------GLRRLQFLGDS 54
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L L R LL+ G+PE+ IP +AK+ A +V+ + + V L
Sbjct: 55 LRQLNDALQGR---LLVTRGRPEQRIPLIAKAIEASSVHVTGDFAPFGRRRDERVAAGLG 111
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT-HFRKSIEAKCTVRGC 261
+V L + T P L + + D P+ V+T FRK +A+
Sbjct: 112 RVPLVA------TGSPYL--VSPGRVVKNDGSPYQ------VFTPFFRKWQDARW----- 152
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
R P+ GP + + IEQ E+ P + GE+AA+ + K L
Sbjct: 153 -RAPADTGPGSACWLDPAQTDIEQCEIPDPGTE--LDLAAGEAAAIREWTAFRTAK--LD 207
Query: 322 VYKETRNEMLGPDY--STKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
Y+ R+ PD+ +++ S +L G+I PR + + + L EL +
Sbjct: 208 RYEHDRDR---PDFEGTSRMSAYLKFGTIHPRTMVAGMD------LTGTGARSYLRELAF 258
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQD------------QKLFESWRDGCTGYPLI 427
RD+ YG L H P + W+ + +++FE W+ G TGYPL+
Sbjct: 259 RDF-------YGAVLHHW--PASAWHNWNSNFDGIVTDTDANARRVFECWKAGETGYPLV 309
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L TGFM NR R IA SFLV+D+ + W+ GA WF L D D SN W + A
Sbjct: 310 DAGMRQLRETGFMHNRVRMIAASFLVKDLHLPWQWGAAWFLDQLTDGDLASNQHGWQWSA 369
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLK 523
G G D R F+ QA+ +D G+Y+ W+P+L+
Sbjct: 370 GCGTDAAPYFRIFNPSAQAEKFDPAGDYIRRWVPELR 406
>gi|319954856|ref|YP_004166123.1| deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
gi|319423516|gb|ADV50625.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
Length = 436
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 203/446 (45%), Gaps = 41/446 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
++I WFR DLR+ DN L +A VLP++ D + PK A R F+ E
Sbjct: 5 ISIFWFRRDLRLEDNVGLYQALKGDYPVLPIFIFDKEILE-----NLPKDDA-RVSFIFE 58
Query: 142 CLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
L +R L +L I HG P+EI SL K + AVY + E ER +
Sbjct: 59 QLESMRNTLQEEVESSLAIYHGTPQEIFKSLIKDYEVQAVYTNHDY--EPYATERDTK-- 114
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ DK + K ++ D+ D VYT ++
Sbjct: 115 -----IQDYLKDKQVDFHSYK---DQVIFEKGDVLKDDGDPYVVYTPYKN---------- 156
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ + F + + + + HS + + +G E++ + +V Y ++
Sbjct: 157 --KWKTIFDAKKDLETYNTKKYFKNFIAHSRLPNLSLSDMGFETSKI-KVPNYSAGSKVI 213
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
+ Y++TRN + +++ P L GS+S R I + R + +W EL+WR
Sbjct: 214 QNYEDTRNYPAIENGTSRLGPHLRFGSVSIREITK------RAIAEKNEVFWS--ELIWR 265
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
++F I + ++ + P+ +W ++ FE W++G TGY L+DA M+EL+ TG+M
Sbjct: 266 EFFMQILWHFPHTTKNAFRPKYDRIEWRNNEAEFEKWKNGETGYALVDAGMRELNTTGYM 325
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYF 499
NR R + SFL + + IDWR G +F LLD+D +N GNW + AG G D R F
Sbjct: 326 HNRVRMLVASFLCKHLLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIF 385
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+ Q +D++ EY+ W+ L+ L
Sbjct: 386 NPMTQVDKFDKQKEYINTWVSDLQEL 411
>gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F]
gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides
F]
Length = 487
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 212/458 (46%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN AL A D V+ V+ P Q H P+ A FL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATP--VQWAAHGMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-----VYAQKETCSEELNVERLV 197
L L+ L RG+ L + + F Y+Q+ +E L + L
Sbjct: 59 LQHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALA 118
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ ++ + +D P L MY V+T FR++ +
Sbjct: 119 VQLSERAITCQSFHDSVLLAPGTVLTGNNEMY-------------KVFTPFRRAFIQRLL 165
Query: 258 VRG--CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYF 314
+ C+ P + PP L+ L P+ S F GE AAL R+ +
Sbjct: 166 MSDNHCVPAPKARHAPPV--------LLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC 217
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYW 372
++ ++ Y++ R+ P S SP+L G +SPR + + +S E A+ +
Sbjct: 218 --REQVQDYRQYRDLPAVPGTSC-LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFT 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L EL+WR+++R + + Y H +G L W++ + ++W+ G TGYP++DA
Sbjct: 275 WLNELIWREFYRHLLVAYPRLCQHHPFIGWTDGL--VWNRSESQLKAWQQGQTGYPIVDA 332
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++++ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 333 AMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAAST 392
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +D++G ++ WLP+L A+P
Sbjct: 393 GTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
>gi|119899747|ref|YP_934960.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
gi|119672160|emb|CAL96074.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
Length = 503
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/460 (27%), Positives = 212/460 (46%), Gaps = 33/460 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
VA+VWFR DLR +D+ AL A E V + D T P R +F+
Sbjct: 26 VALVWFRRDLRCVDHAALYHALREHERVYCAFVFD-----TDILDALPTRADRRVEFIHA 80
Query: 142 CLADLRKNL--MNR-----GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
+ +L + L ++R G L++RHG+ +E IP+LA++ G AVY ++ + +
Sbjct: 81 AVVELDRALEALSREAGGSGSGLIVRHGRAQEAIPALAQALGVDAVYVNRDYEPAAIARD 140
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R V + L + + + + +++ P+ ++ L + + ++
Sbjct: 141 RAVAERLAEHGRTLRDFKDQVIFDRDEVLTQAGQPFSVFTPYKNAWLRKLDPFYLQAYPI 200
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
R P+ G P ++ G P + L P + G R + G+ GR+ +Y
Sbjct: 201 APRARRLAPKPAGEGVP-ALGRIGFEP-TDLRGLALPTGASGARALFGDFC--GRIEDYR 256
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
+D V G Y S L G+I R E+ +Y + + W L
Sbjct: 257 IARDFPAVK--------GVSY---LSTHLRFGTIPVR----ELAAYAVHQGGAGAQTW-L 300
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WRD+++ I + + P +W LF++WR+G TGYP++DA M++L
Sbjct: 301 SELIWRDFYQMILWHHPRVVDQAFRPEFDRIRWDDAPALFDAWREGRTGYPIVDAGMRQL 360
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+G+M NR R I SFL +D+G+DWR+G F L DYD +N G W + A G D +
Sbjct: 361 LRSGYMHNRLRMIVASFLTKDLGVDWRLGERHFAAHLNDYDLAANNGGWQWAASTGCDAQ 420
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q+Q +D EG ++ ++P+L +P + P
Sbjct: 421 PYFRIFNPVTQSQKFDPEGRFIRRYVPELARVPDRHIHAP 460
>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
Length = 474
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 218/458 (47%), Gaps = 44/458 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A + V+ V+C+DP +R +++
Sbjct: 4 LILFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPEI------LSGDDIAPVRVAYMLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+++ G LLI P + + LA + GA AVY ++ +R V ++L
Sbjct: 58 CLQCLQEDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVRG 260
+V + +++ W ++ + I F S P VYT + + +
Sbjct: 118 TEVGI------------KVETFWDQVLHSPEAI-FTGSKEPYKVYTPYWRKWIQQPKPEP 164
Query: 261 CIRIPSSF---GPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
C R+ S+ + ++ G++ L +L S+ GE+AA R+ E F +
Sbjct: 165 CQRLKSTGLTEAQEKAALEAGAIALPTAKDLGF-IWSEPFILEPGETAASDRL-EIFCDR 222
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWVL 374
+ + Y E RN D ++ SP L G+I R +++ E+ + R A
Sbjct: 223 AIYE-YDEGRN-FPAIDGTSVLSPALRFGAIGIRTLWQKTQEIIALTRSDEARHHIQTWQ 280
Query: 375 FELMWRDYFRFISLKYGNSLFH-----LGGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
EL WR++ Y +L+H +G R+ + WS +Q+ F++W G TGYP++
Sbjct: 281 QELAWREF-------YQQALYHFPALAIGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIV 333
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D SN G W + +
Sbjct: 334 DAAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSS 393
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G DP+ R F+ Q Q YD E EY+ WLP+L+ L
Sbjct: 394 SSGMDPKPLRIFNPASQTQKYDPEAEYIRQWLPELRNL 431
>gi|108808420|ref|YP_652336.1| deoxyribodipyrimidine photolyase [Yersinia pestis Antiqua]
gi|167398528|ref|ZP_02304052.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|108780333|gb|ABG14391.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Antiqua]
gi|167051032|gb|EDR62440.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. UG05-0454]
Length = 485
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 212/458 (46%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN AL A D V+ V+ P Q H P+ A FL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATP--VQWAAHGMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-----VYAQKETCSEELNVERLV 197
L L+ L RG+ L + + F Y+Q+ +E L + L
Sbjct: 59 LQHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALA 118
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ ++ + +D P L MY V+T FR++ +
Sbjct: 119 VQLSERAITCQSFHDSVLLAPGTVLTGNNEMY-------------KVFTPFRRAFIQRLL 165
Query: 258 VRG--CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYF 314
+ C+ P + PP L+ L P+ S F GE AAL R+ +
Sbjct: 166 MSDNHCVPAPKARHAPPV--------LLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC 217
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYW 372
++ ++ Y++ R+ P S SP+L G +SPR + + +S E A+ +
Sbjct: 218 --REQVQDYRQYRDLPAVPGTSC-LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFT 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L EL+WR+++R + + Y H +G L W++ + ++W+ G TGYP++DA
Sbjct: 275 WLNELIWREFYRHLLVAYPRLCQHHPFIGWTDGL--VWNRSESQLKAWQQGQTGYPIVDA 332
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++++ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 333 AMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAAST 392
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +D++G ++ WLP+L A+P
Sbjct: 393 GTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
>gi|427705816|ref|YP_007048193.1| deoxyribodipyrimidine photo-lyase type I [Nostoc sp. PCC 7107]
gi|427358321|gb|AFY41043.1| deoxyribodipyrimidine photo-lyase type I [Nostoc sp. PCC 7107]
Length = 479
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 132/483 (27%), Positives = 223/483 (46%), Gaps = 46/483 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A S V+ V+C+D + +R ++I CL
Sbjct: 6 LFWHRRDLRISDNTGLATARSQSPKVVGVFCLDRNILERD------DIAPVRVTYMIGCL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L++ G LLI H E+IP+LA++ A AV+ + +R + L+
Sbjct: 60 QALQERYAQIGSQLLILHADAMEVIPALAEALNAKAVFWNWDVEPYSQIRDRNIIDALKA 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ S + W T++ +I ++ VYT F K+ +K
Sbjct: 120 KGIQFLSEN-----------WDQTLHSPAEIRTGSNTPYTVYTPFWKNWTSKPKAPPVAT 168
Query: 264 IPSSFGPPPS----VVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
+ + G P+ + G++PL +L S + GE++A R+ E+ +K
Sbjct: 169 LQTVEGLTPAEQEIAQNAGAIPLPTAKDLGFIWDSD-LILSPGEASAQARLAEFTYKT-- 225
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF---E 376
+ Y+E RN D +++ S L G+I R +++ + + + ++T + E
Sbjct: 226 ITEYQEQRN-FPATDGTSQLSAALKFGAIGIRTVWQATVAAQENSRSEETTTSIRTWQQE 284
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
L WR++++ Y G R + W + F++W +G TGYP++DA M++L
Sbjct: 285 LAWREFYQHA--MYSFPELAEGAYRDAFKNFPWETNDAHFQAWCEGKTGYPIVDAAMRQL 342
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ +G+M NR R I SFL +D+ I ++G ++F L+D D +N G W + A G DP+
Sbjct: 343 NQSGWMHNRCRMIVASFLTKDLLISPQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPK 402
Query: 495 EDRYFSIPKQAQNYDREGEYVAYWLPQLKAL-----------PKERRNFPGGSYIEQIVS 543
R F+ Q Q +D +GEY+ WLP+L+++ P ERR SY E IV
Sbjct: 403 PLRIFNPASQTQKFDPDGEYIRRWLPELRSIDNEYLVTGKITPLERRAV---SYPEPIVD 459
Query: 544 LKH 546
K
Sbjct: 460 HKQ 462
>gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
BisA53]
gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisA53]
Length = 483
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/453 (29%), Positives = 203/453 (44%), Gaps = 37/453 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++VWFR+DLR+ D+ AL A S VL +Y +D + G P GA R +L +
Sbjct: 9 SLVWFRDDLRLSDHPALNAAASSGRPVLCLYVLDEQSPG-----GRPLGGAAR-WWLAQS 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L++ L RG L++R G +++ LA+ A VY + V + L
Sbjct: 63 LRSLQQILSERGATLMLRRGAAAQVVAGLARETNAEVVYYNDIAMAPARTVAAELAATLA 122
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
++ HP G + + I V+T F K + + +
Sbjct: 123 DHGIAVH------QHP------GDLLAAPETIRTKEGRGLRVFTPFWKRVLSLGDPAKPL 170
Query: 263 RIPSSFGPPPSVV-----DWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
P++ GPPP+ DW LE +P + G+R + GE+AA + ++
Sbjct: 171 PAPTALGPPPAAASDRLDDWA-------LEPTAPDWAGGLRAAWQPGEAAAQRALTDFL- 222
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY-WVL 374
+ Y R+ P S SP L G I PR I+ + R A L
Sbjct: 223 -TTGIAGYAGDRDRPDRPGTSL-LSPHLRFGEIGPRQIWHAARFAAAARPAIAGDVDKFL 280
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL WR++ R + + + P + W +D +W+ G TGYP++DA M++L
Sbjct: 281 SELGWREFCRHLLFDHSDLATRNLQPAFDAFPWVEDPAGLRAWQRGLTGYPIVDAGMRQL 340
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
TG M NR R + SFLV+ + IDWR G +WF L+D D SN GNW + AG G D
Sbjct: 341 WQTGVMHNRVRMVVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNPGNWQWVAGCGADAA 400
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D +G YV ++P+L LP
Sbjct: 401 PYFRVFNPILQGEKFDPDGAYVRRFVPELARLP 433
>gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
YPIII]
gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis
YPIII]
Length = 487
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 138/458 (30%), Positives = 220/458 (48%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN AL A D V+ V+ P Q H P+ A FL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATP--VQWATHGMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-----VYAQKETCSEELNVERLV 197
L L+ L RG+ L + + F Y+Q+ ELN ERL
Sbjct: 59 LQHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQY----ELN-ERL- 112
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
R + V LS ++ + H + L GT + ++ + V+T FR++ +
Sbjct: 113 RDDALAVQLSGRAITCQSFHDSVLLAPGTVLT-------GNNEMYKVFTPFRRAFIQRLL 165
Query: 258 VRG--CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYF 314
+ C+ P + PP L+ L P+ S F GE AAL R+ +
Sbjct: 166 MSDNHCVPAPKARHAPPV--------LLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC 217
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYW 372
++ ++ Y++ R+ P S SP+L G +SPR + + +S E A+ +
Sbjct: 218 --REQVQDYRQYRDLPAVPGTSC-LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFT 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L EL+WR+++R + + Y H +G L W++ + ++W+ G TGYP++DA
Sbjct: 275 WLNELIWREFYRHLLVAYPRLCQHHPFIGWTDGL--VWNRSESQLKAWQQGQTGYPIVDA 332
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++++ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 333 AMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAAST 392
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +D++G ++ WLP+L A+P
Sbjct: 393 GTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
>gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
32953]
gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia
pseudotuberculosis IP 32953]
Length = 487
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 138/458 (30%), Positives = 220/458 (48%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN AL A D V+ V+ P Q H P+ A FL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATP--VQWAAHGMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-----VYAQKETCSEELNVERLV 197
L L+ L RG+ L + + F Y+Q+ ELN ERL
Sbjct: 59 LQHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQY----ELN-ERL- 112
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
R + V LS ++ + H + L GT + ++ + V+T FR++ +
Sbjct: 113 RDDALAVQLSGRAITCQSFHDSVLLAPGTVLT-------GNNEMYKVFTPFRRAFIQRLL 165
Query: 258 VRG--CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYF 314
+ C+ P + PP L+ L P+ S F GE AAL R+ +
Sbjct: 166 MSDNHCVPAPKARHAPPV--------LLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC 217
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYW 372
++ ++ Y++ R+ P S SP+L G +SPR + + +S E A+ +
Sbjct: 218 --REQVQDYRQYRDLPAVPGTSC-LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFT 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L EL+WR+++R + + Y H +G L W++ + ++W+ G TGYP++DA
Sbjct: 275 WLNELIWREFYRHLLVAYPRLCQHHPFIGWTDGL--VWNRSESQLKAWQQGQTGYPIVDA 332
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++++ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 333 AMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAAST 392
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +D++G ++ WLP+L A+P
Sbjct: 393 GTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
>gi|183981685|ref|YP_001849976.1| DNA photolyase, PhrI [Mycobacterium marinum M]
gi|183175011|gb|ACC40121.1| DNA photolyase, PhrI [Mycobacterium marinum M]
Length = 447
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 211/457 (46%), Gaps = 70/457 (15%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A++WFR DLR+ D+ AL A DS E VL + VDPR ++ G R QFL +
Sbjct: 4 ALLWFRRDLRLGDHPALAAAADSEE-VLACFVVDPRLEASS--------GLRRLQFLGDS 54
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L L R LL+ G+PE+ IP +AK+ A +V+ + + V L
Sbjct: 55 LRQLNDALQGR---LLVTRGRPEQRIPLIAKAIEASSVHVSGDFAPFGRRRDERVAAGLG 111
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT-HFRKSIEAKCTVRGC 261
+V L + T P L + + D P+ V+T FRK +A+
Sbjct: 112 RVPLVA------TGSPYL--VSPGRVVKNDGSPYQ------VFTPFFRKWQDARW----- 152
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
R P+ GP + + IEQ E+ P + GE+AA+ + K L
Sbjct: 153 -RAPAGTGPGSACWLDPAQTDIEQCEIPDPGTE--LDLAAGEAAAIREWTAFRTAK--LD 207
Query: 322 VYKETRNEMLGPDY--STKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
Y+ R+ PD+ +++ S L G+I PR + + + L EL +
Sbjct: 208 RYEHDRDR---PDFEGTSRMSAHLKFGTIHPRTMVAGMD------LTGTGARSYLRELAF 258
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQD------------QKLFESWRDGCTGYPLI 427
RD+ YG L H P + W+ + ++LFE W+ G TGYPL+
Sbjct: 259 RDF-------YGAVLHHW--PASAWHNWNSNFDGIVTDTDADARRLFECWKAGETGYPLV 309
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L TGFM NR R IA SFLV+D+ + W+ GA WF L D D SN W + A
Sbjct: 310 DAGMRQLRETGFMHNRVRMIAASFLVKDLHLPWQWGAAWFLDQLTDGDLASNQHGWQWSA 369
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLK 523
G G D R F+ QA+ +D G+Y+ W+P+L+
Sbjct: 370 GCGTDAAPYFRIFNPSAQAEKFDPAGDYIRRWVPELR 406
>gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
Length = 481
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 144/492 (29%), Positives = 209/492 (42%), Gaps = 60/492 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR LR+ D+ AL A S V+ Y D + P GA R +L + L
Sbjct: 7 VVWFRESLRLSDHPALHAAATSGAPVICCYVYDTESAALR-----PLGGASR-WWLAQSL 60
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L+ L G+ L+IR G + I LA+ AVY
Sbjct: 61 RALQDELDALGVKLVIRRGPSAKAISELAREASTSAVY-------------------WND 101
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSL-------PDVYTHFRKSIEAKC 256
V + + L I + DD+ D + L P V+T F K + A
Sbjct: 102 VAQTGPRAVAAEVEAALDAIGVKSRVFADDLLIDPAELRGKDGRGPRVFTPFWKRVLALG 161
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYF 314
+ +P P V L LE SP + G+R + GE AA R+ ++
Sbjct: 162 DPPKPLPVPVRLSSPSGVASLTVDKL--ALEPTSPDWAGGLRTTWRAGERAAQARLAKFL 219
Query: 315 WKKDLLKVYKETRNEMLGPDY--STKFSPWLASGSISPRYIYEEVK-SYERERVANDSTY 371
+ ++ Y R+ PD +++ SP L G ISPR I+ + + E++
Sbjct: 220 --ETTVRGYAADRDR---PDIEATSRLSPHLRFGEISPRQIWHAARFAAEQQPAFARGID 274
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
L EL WR++ R + + P + WSQD +W+ G TGYP++DA M
Sbjct: 275 KFLSELGWREFSRHLLFNNPDLATRNLQPSFDAFPWSQDAAALRAWQRGQTGYPIVDAGM 334
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TG M NR R +A S LV+ + IDWR+G +WF L+D DP SN +W + AG G
Sbjct: 335 RELWHTGSMHNRVRMVAASLLVKHLLIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGA 394
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------------GG 535
D R F+ Q + +D G YV W+P+L LP + P G
Sbjct: 395 DAAPYFRVFNPVLQGEKFDSSGTYVRRWVPELARLPAALIHQPWAAKPLELAEAGVVLGR 454
Query: 536 SYIEQIVSLKHG 547
SY +V +HG
Sbjct: 455 SYPAPVVDHRHG 466
>gi|420547711|ref|ZP_15045581.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
gi|391424563|gb|EIQ86924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
Length = 487
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 212/458 (46%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN AL A D V+ V+ P Q H P+ A FL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATP--VQWAAHGMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-----VYAQKETCSEELNVERLV 197
L L+ L RG+ L + + F Y+Q+ +E L + L
Sbjct: 59 LQHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALA 118
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ ++ + +D P L MY V+T FR++ +
Sbjct: 119 VQLSERAIPCQSFHDSVLLAPGTVLTGNNEMY-------------KVFTPFRRAFIQRLL 165
Query: 258 VRG--CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYF 314
+ C+ P + PP L+ L P+ S F GE AAL R+ +
Sbjct: 166 MSDNHCVPAPKARHAPPV--------LLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC 217
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYW 372
++ ++ Y++ R+ P S SP+L G +SPR + + +S E A+ +
Sbjct: 218 --REQVQDYRQYRDLPAVPGTSC-LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFT 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L EL+WR+++R + + Y H +G L W++ + ++W+ G TGYP++DA
Sbjct: 275 WLNELIWREFYRHLLVAYPRLCQHHPFIGWTDGL--VWNRSESQLKAWQQGQTGYPIVDA 332
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++++ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 333 AMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAAST 392
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +D++G ++ WLP+L A+P
Sbjct: 393 GTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
>gi|443490099|ref|YP_007368246.1| DNA photolyase, PhrI [Mycobacterium liflandii 128FXT]
gi|442582596|gb|AGC61739.1| DNA photolyase, PhrI [Mycobacterium liflandii 128FXT]
Length = 447
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 211/457 (46%), Gaps = 70/457 (15%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A++WFR DLR+ D+ AL A DS E VL + VDPR ++ G R QFL +
Sbjct: 4 ALLWFRRDLRLGDHPALAAAADSEE-VLACFVVDPRLEASS--------GLRRLQFLGDS 54
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L L R LL+ G+PE+ IP +AK+ A +V+ + + V L
Sbjct: 55 LRQLNDALQGR---LLVTRGRPEQRIPLIAKAIEASSVHVTGDFAPFGRRRDERVAAGLG 111
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT-HFRKSIEAKCTVRGC 261
+V L + T P L + + D P+ V+T FRK +A+
Sbjct: 112 RVPLVA------TGSPYL--VSPGRVVKNDGSPYQ------VFTPFFRKWQDARW----- 152
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
R P+ GP + + IEQ E+ P + GE+AA+ + K L
Sbjct: 153 -RAPADTGPGSACWLDPAQTDIEQCEIPDPGTE--LDLAAGEAAAIREWTAFRTAK--LD 207
Query: 322 VYKETRNEMLGPDY--STKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
Y+ R+ PD+ +++ S L G+I PR + + + L EL +
Sbjct: 208 RYEHDRDR---PDFEGTSRMSAHLKFGTIHPRTMVAGMD------LTGTGARSYLRELAF 258
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQD------------QKLFESWRDGCTGYPLI 427
RD+ YG L H P + W+ + ++LFE W+ G TGYPL+
Sbjct: 259 RDF-------YGAVLHHW--PASAWHNWNSNFDGIVTDTDANARRLFECWKAGETGYPLV 309
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L TGFM NR R IA SFLV+D+ + W+ GA WF L D D SN W + A
Sbjct: 310 DAGMRQLRETGFMHNRVRMIAASFLVKDLHLPWQWGAAWFLDQLTDGDLASNQHGWQWSA 369
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLK 523
G G D R F+ QA+ +D G+Y+ W+P+L+
Sbjct: 370 GCGTDAAPYFRIFNPSAQAEKFDPAGDYIRRWVPELR 406
>gi|411001340|ref|ZP_11377669.1| deoxyribodipyrimidine photo-lyase [Streptomyces globisporus C-1027]
Length = 451
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 124/440 (28%), Positives = 208/440 (47%), Gaps = 35/440 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+V F +DLR+ DN L A ++ V+P++ D + GF R FL +CL
Sbjct: 1 MVLFTSDLRLHDNPVLRAALRDADEVVPLFVRD----DAVHRAGFDAPN--RLAFLADCL 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADL L +R L++R G + + + GA +V+ E VR+ L
Sbjct: 55 ADLDAGLRDRDGRLIVRRGGTAREVKRVVEETGAQSVHIAAGVSGYAAQREERVREALAG 114
Query: 204 VVLSSQSNDKS-TNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ +D T P +++ H V+T + + EA+ VRG +
Sbjct: 115 TGCDLRVHDAVVTALPPGRVVPTGGKDHFA-----------VFTPYFRRWEAEG-VRGTL 162
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
P + P V ++P + ++ SP +++G GE A GR W +
Sbjct: 163 TAPRTVRVPDGVSG-DALPDRDTIKNLSPGLARG-----GEKA--GRKLVASWLHGPMAD 214
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
Y++ +++ G D +++ SP L G++S E+ + RE+ +V +L WRD+
Sbjct: 215 YEDGHDDLAG-DATSRLSPHLHFGTVS----AAELANRAREKGGPGGEAFVR-QLAWRDF 268
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
+ ++ + PR +W D ++W+ G TG+PL+DA M++L+ G+M N
Sbjct: 269 HHQVLAARHDASWSDYRPR--HDRWRSDADEIDAWKTGLTGFPLVDAAMRQLAHEGWMHN 326
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIP 502
RGR +A SFL + + +DWR+GA F L+D D +N NW + AG G D R +R +
Sbjct: 327 RGRMLAASFLTKTLYVDWRVGARHFLDLLVDGDMANNQLNWQWVAGTGTDTRPNRILNPV 386
Query: 503 KQAQNYDREGEYVAYWLPQL 522
Q + +D +G YV W+P+L
Sbjct: 387 VQGKRFDPDGAYVRRWVPEL 406
>gi|383763855|ref|YP_005442837.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384123|dbj|BAM00940.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 475
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 135/455 (29%), Positives = 201/455 (44%), Gaps = 40/455 (8%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
AI W R DLR+ DN+AL A + ++P + +DPR ++Y G R FL
Sbjct: 2 ATAIWWIRRDLRLTDNQALTAALTRAAQIVPCFVLDPRLLNSSY------AGERRKAFLF 55
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
L L +L RG L++R G P ++ LA GA AVYA+++ + V +
Sbjct: 56 SGLRVLDADLRRRGGRLIVRCGDPAAVLSRLAAESGACAVYAERDYSPYARCRDEAVARA 115
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L L L G T+ D + D + V+T + + + V
Sbjct: 116 LPI---------------PLVLTDGLTIRRPDALLKDDGTPYTVFTPYSRRWRSYPPVGA 160
Query: 261 --CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
+ P+ P S+V P+ +Q L F GE+ A R+ F D
Sbjct: 161 HEILPAPARLAVPESIV---GEPIPKQPHLDDDTGP----FPSGEAEAQARLRR-FTTGD 212
Query: 319 LLKVYKETR-NEMLGPDYSTKFSPWLASGSISPR-----YIYEEVKSYERERVANDSTYW 372
+Y + + D ++K SP+L G +S R + E+ T+
Sbjct: 213 EAPIYAYAQARDFPDLDSTSKLSPYLRFGMLSARQAALAAYQAMDAAANAEQRTGAETW- 271
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WRD++ I + + W + F +W G TGYP IDA M+
Sbjct: 272 -LTELIWRDFYYSILYHFPHVARGCFQRAYDAIIWENNPTHFAAWCAGLTGYPFIDAAMR 330
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R SFLV+D+ IDWR G +WF LLD D +N G W + AGVG D
Sbjct: 331 QLAATGWMHNRARMAVASFLVKDLLIDWRWGEKWFMQRLLDGDLAANNGGWQWSAGVGTD 390
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q Q +D G Y+ W+P+L+ +P
Sbjct: 391 AAPYFRIFNPTAQGQKFDPRGVYIRRWVPELRLVP 425
>gi|428218359|ref|YP_007102824.1| deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
gi|427990141|gb|AFY70396.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
Length = 489
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 126/462 (27%), Positives = 215/462 (46%), Gaps = 38/462 (8%)
Query: 78 NGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQ 137
N + + IVW R DLR+ DN AL +A + + ++ DP+ ++ TGA +
Sbjct: 7 NSQNLTIVWHRRDLRIADNPALDQAIAQNGATIGIFIFDPQILESKAED--QTTGAGQVD 64
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
F++ CL +L+ + G +LL HG P + I +A++ A V+ + +VE
Sbjct: 65 FMLGCLQELQAAYQDLGSDLLFFHGDPAKTIRDIAQTLNAARVFFNQ-------DVEPFA 117
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
R+ +Q + + ++K ++ D I + + VYT F +S AK
Sbjct: 118 RERDRQACAA-----LAEIGVEVKSFLDLALHAPDAISTNSGTPYKVYTPFWRSWIAKAK 172
Query: 258 VRGCIRIPSSFGPPPSVVDW----GSVPLIEQLELHSPKVSKGMRF-------VGGESAA 306
P P +V IE + P+++ + F G AA
Sbjct: 173 -------PQPLPSPAKLVGLDGRTSESRSIEAKAIALPRLAD-LGFSCDQDIPTAGIKAA 224
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERERV 365
+ + F + + Y++ RN P S SP L G+I R +++ V + E R
Sbjct: 225 EQCLQD-FCDTNKIFNYQQERNFPANPGTSM-LSPHLRFGTIGIRQVWQATVAATEHIRS 282
Query: 366 ANDSTYWVLF--ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTG 423
+ + EL WR++++ + + + + ++W D+ F +W G TG
Sbjct: 283 DEEKAGLQTWRQELAWREFYQHVLFHFPDLATGAYRSQMQVFEWDDDEAKFAAWCKGETG 342
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YP++DA M++L+ TG+M NR R I SFL +D+ I+W+ G +F L+D D +N G W
Sbjct: 343 YPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQWGERYFMEKLVDGDQAANNGGW 402
Query: 484 TYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ A G DP+ R F+ QA+ YD++GEY+ W+P+L L
Sbjct: 403 QWSASSGMDPKPLRIFNPASQARKYDKDGEYIRRWIPELAGL 444
>gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
Length = 481
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 131/452 (28%), Positives = 222/452 (49%), Gaps = 33/452 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR+DLR+ DN AL A D V+ V+ P+ Q H P+ A FL +
Sbjct: 5 LVWFRHDLRITDNLALHAACQDEQAKVMAVFIATPK--QWAAHDMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRH-GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L+ L +RG+ L ++ I LA V A ELN R R
Sbjct: 59 LHLLQAALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMR--RDEA 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
V L+ +S + H + L G+ + ++ + ++T FR++ + + C
Sbjct: 117 FTVQLNRRSIACHSFHDSVLLPPGS-------VQTGNNEMYKIFTPFRRAFIQRLMMSDC 169
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFWKKDLL 320
+P+ P + + G++ L P+ S F GE AAL R+ + ++ +
Sbjct: 170 RSVPA----PKARQNAGAITLTPLEPFDYPQQSVDSQLFPAGEEAALQRLRSFC--REQV 223
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV--ANDSTYWVLFELM 378
+ Y + R ++ ++ SP+LA G +SPR + +++ + + ++ + L EL+
Sbjct: 224 QDYLQQR-DLPAVAGTSGLSPYLALGILSPRQCFNRLRAECPDLLESSDSGAFTWLNELI 282
Query: 379 WRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
WR+++R + + Y H +G + +W+ + +W+ G TGYP++DA M++L+
Sbjct: 283 WREFYRHLLVAYPRLCQHHPFMGWTDAV--RWNHSEPQLIAWQQGLTGYPIVDAAMRQLN 340
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R I SFLV+D+ IDWR+G +F + LLD D +N G W + A G D
Sbjct: 341 ETGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLLDGDLAANNGGWQWAASTGTDAAP 400
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D+EG ++ WLP+L A+P
Sbjct: 401 YFRIFNPTTQGERFDKEGTFIRRWLPELAAVP 432
>gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 504
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 234/495 (47%), Gaps = 62/495 (12%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+++WFR DLRV D AL A S V V+ D S H P+ R +FL
Sbjct: 14 SLIWFRRDLRVFDQAALHHALRQSRTVFCVFIFD---SDILQHL--PEQDR-RIEFLHAS 67
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +L + L+ G L++RH + E IP+LA+ AV+ + + + + + LQ
Sbjct: 68 LTELHEELVKLGGALIVRHARAVEAIPALARELDVEAVFINHDYEPQAIARDAAIATALQ 127
Query: 203 Q--VVLSSQSNDKSTNHPQLKLIWGT-----TMYH---LDDIPFDHSSLPDVYTHFRKSI 252
Q + L S + + ++ + G T Y L + F+ S + H R
Sbjct: 128 QHDIALHSSKDQVVFENDEVLSLAGKPFSVFTPYKNAWLKQLQFNSSDV-----HVRAYP 182
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPL-IEQLELHSPKVSKGMRFVGGESAALGRVN 311
R + + P ++ + G P QL K+ GM GG+ V+
Sbjct: 183 VEPLADRFAVSPVAHVMP--TLAELGFAPTNFAQL-----KIPTGMS--GGQQL----VD 229
Query: 312 EYFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ + D YK+TR+ + GP Y S L G++S R++ ++ E R+A D+
Sbjct: 230 NFMERID---KYKQTRDFPAIKGPSY---LSVHLRFGTVSIRHLAR--RACEAARIAADA 281
Query: 370 T---YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ------DQKLFESWRDG 420
+ W L EL+WRD++ F+ L++ + H G K +Y Q LF++W DG
Sbjct: 282 SGANTW-LAELVWRDFY-FMILQHHPRVVH--GAFKPDYDAIQWETGPAADALFQAWCDG 337
Query: 421 CTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNY 480
TGYPL+DA M +++ TG+M NR R + FL++D+GIDWR G +F L+D+D +N
Sbjct: 338 RTGYPLVDAAMAQINQTGYMHNRLRMVTACFLIKDLGIDWRRGEAYFAEKLIDFDLSANN 397
Query: 481 GNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIE 539
G W + + G D + R F+ Q++ +D +G ++ +LPQL L ++ + P ++
Sbjct: 398 GGWQWASSSGCDAQPYFRIFNPITQSEKFDTDGRFIRRYLPQLAQLGNKQIHAP---WLL 454
Query: 540 QIVSLKHGNINQNRN 554
+ L H + N
Sbjct: 455 TKMELDHAGVELGVN 469
>gi|420691989|ref|ZP_15175191.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
gi|391568598|gb|EIS16299.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
Length = 467
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 131/458 (28%), Positives = 212/458 (46%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN AL A D V+ V+ P Q H P+ A FL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATP--VQWAAHGMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-----VYAQKETCSEELNVERLV 197
L L+ L RG+ L + + F Y+Q+ +E L + L
Sbjct: 59 LQHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALA 118
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ ++ + +D P L MY V+T FR++ +
Sbjct: 119 VQLSERAITCQSFHDSVLLAPGTVLTGNNEMY-------------KVFTPFRRAFIQRLL 165
Query: 258 VRG--CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYF 314
+ C+ P + PP L+ L P+ S F GE AAL R+ +
Sbjct: 166 MSDNHCVPAPKARHAPPV--------LLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC 217
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERERVANDSTYW 372
++ ++ Y++ R+ P S SP+L G +SPR + + +S E A+ +
Sbjct: 218 --REQVQDYRQYRDLPAVPGTSC-LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFT 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L EL+WR+++R + + Y H +G + W++ + ++W+ G TGYP++DA
Sbjct: 275 WLNELIWREFYRHLLVAYPRLCQHHPFIGWADGV--VWNRSESQLKAWQQGQTGYPIVDA 332
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++++ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 333 AMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAAST 392
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +D++G ++ WLP+L A+P
Sbjct: 393 GTDAAPYFRIFNPTTQGERFDKDGVFIRRWLPELAAVP 430
>gi|419957831|ref|ZP_14473897.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
cloacae GS1]
gi|388607989|gb|EIM37193.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
cloacae GS1]
Length = 470
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/473 (27%), Positives = 225/473 (47%), Gaps = 41/473 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A + + VL ++ P Q H P+ AL + +L
Sbjct: 5 LVWFRADLRIHDNFALAAACRAKDANVLALFIATP--EQWRQHDMAPRQAALLSAYL--- 59
Query: 143 LADLRKNLMNRGLNLLIRHG----KPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
DL+ +L +G+ L+ + + + ++ + + +Y + E +R +
Sbjct: 60 -NDLQHSLAEKGIPLIYKEAHDFAAQRQTVQAICQQYAVTNLYYNYQYEFNEQQRDRQLE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI--EAKC 256
K+L VV +D P + MY V+T F+ + K
Sbjct: 119 KSLAGVVCEG-FDDSVMLAPGSVMTGSHEMY-------------KVFTPFKNAFIKRLKE 164
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+ C+ PS G ++ D + + L+ P+ S F E AA+ R+ ++
Sbjct: 165 GLPECVTAPSVRGE--TITD------LPAIRLNYPQQSFDETVFPASEKAAIARLRQFCA 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ V E R + + +++ S LA G++SPR + + + + + + L
Sbjct: 217 QG---AVEYEARRDFPAIEGTSRLSACLALGALSPRQCLHRLLAEQPQALDGGAGAVWLN 273
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + + + H R E +W ++KL ++W+ G TG+P++DA M++L
Sbjct: 274 ELIWREFYRHLMTYHPDLCKHRPFIRWTEQVQWQSNEKLLKAWQHGLTGFPIVDAAMRQL 333
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 334 NETGWMHNRLRMITASFLVKDLLIDWRTGERYFISQLIDGDLAANNGGWQWAASTGTDAA 393
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKH 546
R F+ Q Q +D +GE++ WLP+LK +P + + P +Q V+L +
Sbjct: 394 PYFRIFNPTTQGQRFDADGEFIRRWLPELKDVPAKAIHEPWVWADKQRVTLNY 446
>gi|427723364|ref|YP_007070641.1| deoxyribodipyrimidine photo-lyase type I [Leptolyngbya sp. PCC
7376]
gi|427355084|gb|AFY37807.1| deoxyribodipyrimidine photo-lyase type I [Leptolyngbya sp. PCC
7376]
Length = 475
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/463 (26%), Positives = 214/463 (46%), Gaps = 54/463 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN AL +A SE V+ V+C DP R ++L+
Sbjct: 4 LVLHWHRRDLRLHDNVALTRARKQSEKVVGVFCFDPAILTAD------DMAPARVKYLLA 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L ++ G LLI +GKP E++P + A AVY L+VE +K
Sbjct: 58 CLEELSESYCQVGSELLILNGKPVELLPRVTAILKATAVYWN-------LDVEPYAQKRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ ++ + +++ +W ++ I S VY+ F ++ +
Sbjct: 111 HDMAIALRQAGA-----KVETVWDQLLHPPGKILTKSKSPYKVYSPFWRNWSKQ------ 159
Query: 262 IRIPSSFGPPPSVVDWGSVP-----LIEQLELHSPKVS-------KGMRFVGGESAALGR 309
P P++ D + I++ + P + + GE +L +
Sbjct: 160 ----EKAEPLPAIADCAGLSDAEREKIKEFNIELPSLETLGFEWEQPFTVPVGERQSLAQ 215
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE----VKSYERERV 365
+ + ++ ++ Y+ RN + +++ S L G I R +++ +++ E
Sbjct: 216 LETF--TENFVEAYEGDRN-FPAIEGTSRLSAALKFGVIGIRKVWQSTLDALENCRSEEA 272
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCT 422
T W EL WR++++ + GP + E++ W D+ F++W G T
Sbjct: 273 EKGVTTWQQ-ELAWREFYQHCMFFFPE---LAKGPYRDEFQAFQWENDETKFQAWCAGKT 328
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
GYP++DA M++L+ TG+M NR R I SFL +D+ IDWR G ++F L+D D +N G
Sbjct: 329 GYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQTLVDGDLSANNGG 388
Query: 483 WTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
W + A G DP+ R F+ Q + +D E EY+ WLP++++L
Sbjct: 389 WQWSASSGMDPKPLRIFNPASQTKKFDAEAEYIRKWLPEVRSL 431
>gi|409989683|ref|ZP_11273203.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
gi|409939453|gb|EKN80597.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
Length = 474
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 131/458 (28%), Positives = 217/458 (47%), Gaps = 44/458 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A + V+ V+C+DP +R +++
Sbjct: 4 LILFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPEI------LSGDDIAPVRVAYMLG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+++ G LLI P + + LA + GA A+Y ++ +R V ++L
Sbjct: 58 CLQCLQEDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVRG 260
+V + +++ W ++ + I F S P VYT + + +
Sbjct: 118 TEVGI------------KVETFWDQVLHSPEAI-FTGSKEPYKVYTPYWRKWIQQPKPEP 164
Query: 261 CIRIPSSF---GPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
C R+ S+ + ++ G++ L +L S+ GE+AA R+ E F +
Sbjct: 165 CQRLKSTGLTEAQEKAALEAGAIALPTAKDLGF-IWSEPFILEPGETAASDRL-EIFCDR 222
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWVL 374
+ + Y E RN D ++ SP L G+I R +++ E+ + R A
Sbjct: 223 AIYE-YDEGRN-FPAIDGTSVLSPALRFGAIGIRTLWQKTQEIMALTRSDEARHHIQTWQ 280
Query: 375 FELMWRDYFRFISLKYGNSLFHL-----GGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
EL WR++ Y +L+H G R+ + WS +Q+ F++W G TGYP++
Sbjct: 281 QELAWREF-------YQQALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIV 333
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D SN G W + +
Sbjct: 334 DAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSS 393
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G DP+ R F+ Q Q YD E EY+ WLP+L+ L
Sbjct: 394 SSGMDPKPLRIFNPASQTQKYDPEAEYIRQWLPELRNL 431
>gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
Length = 499
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 209/461 (45%), Gaps = 32/461 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ---TTYHFGFPKTGAL--RA 136
+VWFR DLR DN AL A E V V+ D Q + P T A R
Sbjct: 13 TGLVWFRRDLRHTDNAALYYALKHCERVWCVFVFDTTILQPLIDKWQSRHPGTQAQDRRV 72
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+F++ L +L + L RG L++ +G P +++P LA AV+A + + +
Sbjct: 73 EFILASLHELDEALRARGGGLVVLYGDPVDLVPKLAAELEVDAVFANHDYEPAAIERDEA 132
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
VR+ L + Q+ + +L+ G P+ ++ L + + K +
Sbjct: 133 VRERLSDAGRALQTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLTSFDLKPFPVET 192
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
+P +P +EQL +P + G S A ++++ +
Sbjct: 193 YANRLAPLPPRLN--------RQLPTLEQLGF-APGNLGELELPTGMSGAQRLLDDFLSR 243
Query: 317 KDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
D Y E R+ GP Y S L G++S R + + + W L
Sbjct: 244 ID---SYAERRDFPAAKGPSY---LSVHLRFGTVSIRTLARLAHEMSLQPDGRGAATW-L 296
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQD---QKLFESWRDGCTGYPLID 428
EL+WRD++ F+ L + L G + +Y +W Q + F +W +G TGYPLID
Sbjct: 297 SELVWRDFY-FMILAHHPRL-AAGASFRADYDRLRWEQGPEAEAAFAAWCEGRTGYPLID 354
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M +L+ TG+M NR R + SFLV+D+G+DWR+G +F L DYD +N G W + A
Sbjct: 355 AAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAAS 414
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D + R F+ Q++ +D EG ++ +LPQL LP +
Sbjct: 415 TGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPAK 455
>gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
Length = 435
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 129/445 (28%), Positives = 195/445 (43%), Gaps = 48/445 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V + WFR DLR+ DN L A VLP++ D S+ + P R F+ E
Sbjct: 4 VTLFWFRRDLRLDDNAGLYHALKERSAVLPLFIFD---SEILENLDDPADA--RVTFIYE 58
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ D+++ L + +L++RHGKP E++ +L+ A+YA + E RK
Sbjct: 59 QIQDMKQQLNAKKSDLIVRHGKPLEVLKTLSDEMAVEAIYANH-------DYEPAARKRD 111
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++V ++ + K ++ D+I D VYT +R + A +
Sbjct: 112 EKV--AAWAAKAGIEFLTFK---DQCLFEKDEILTDARKPYTVYTPYRNKVLANLSEFYL 166
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL-- 319
P+ E KV K + +S R N F DL
Sbjct: 167 KSYPNDL-----------------YESSYAKVKKAEPLLTLKSLGFERSNIEFPPMDLST 209
Query: 320 --LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
LK Y TR+ ++ L G++S R + E K Y S W L EL
Sbjct: 210 KMLKTYHATRDFPADEKGTSHLGLHLRFGTLSVRELAREAKKY--------SPVW-LSEL 260
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRD+F I + P + W + + F+ W +G TGYPL+DA M+EL+ T
Sbjct: 261 IWRDFFMQILWHFPQVENQSFRPEYDKIAWRKSKADFQKWCEGRTGYPLVDAGMRELNAT 320
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED- 496
G+M NR R + SFL + + I W G +F LLDYD +N GNW + AG G D
Sbjct: 321 GYMHNRVRMVVASFLCKHLLIHWYEGERYFAKKLLDYDLSANNGNWQWAAGSGCDAAPYF 380
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQ 521
R F+ Q + +D +G+YV W+P+
Sbjct: 381 RIFNPQTQFEKFDPDGKYVQKWVPE 405
>gi|329296060|ref|ZP_08253396.1| deoxyribodipyrimidine photolyase [Plautia stali symbiont]
Length = 477
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 129/463 (27%), Positives = 213/463 (46%), Gaps = 55/463 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN AL A S+ VL ++ P Q H PK A F+ +
Sbjct: 5 LVWLRNDLRINDNSALAAACRESQAEVLALFIATP--GQWQQHSMAPKQAA----FIHQN 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L+++L RG+ L + + + + A++ + E + V
Sbjct: 59 LCLLQQSLAERGIKLHFHQCDDFAASVDYLATFCQQHKVDALFYNYQYEINERQRDAAVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI------ 252
K L Q + Q D S P + G+ +S+ V+T F K+
Sbjct: 119 KQLDQQSVVCQGFDDSLLLPPGSVQTGS------------NSMFKVFTPFSKAFIRRLQQ 166
Query: 253 ---EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGR 309
E + R P + G + D+ PL E E P GE AAL +
Sbjct: 167 GLPECHHAPKARARAPVAAGKKIAAFDY---PLEEFDETWFP---------AGEEAALKQ 214
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ ++ ++ ++ Y + R+ + D +++ SP+LA G +SPR + + + N S
Sbjct: 215 LRQFVQQR--VEKYDQQRD-IPAIDGTSRLSPYLAIGVLSPRQCLHRILKEHPQALNNGS 271
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
L EL+WR+++R + + + H + R + W Q+++ +W+ G TGYP+
Sbjct: 272 ALVWLNELVWREFYRHLMVTFPALCKHQPFVDWTRNV--SWQQNEQYLTAWQQGKTGYPI 329
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ G+M NR R I SFLV+D+ IDWR G +F L+D D +N G W +
Sbjct: 330 VDAAMRQLNTLGWMHNRLRMITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWA 389
Query: 487 AGVGNDPREDRYFSI---PKQAQNYDREGEYVAYWLPQLKALP 526
A G YF I Q + +D++GE++ WLP+L+ +P
Sbjct: 390 ASTGTGTDAAPYFRIFNPTTQGERFDKQGEFIRRWLPELQDVP 432
>gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614]
gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614]
Length = 478
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 138/457 (30%), Positives = 207/457 (45%), Gaps = 49/457 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+VWFR DLR+ DN AL +A S VLPV+ ++P H P GA R +L
Sbjct: 2 TTLVWFRQDLRIKDNPALFEA-AKSGRVLPVFILEPADKTGETH---PLGGASR-WWLHH 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L+++L L++ G +IP +AK G AV+ + C E +ER
Sbjct: 57 SLKALQQDLPG----LVLLKGDARHLIPEVAKRAGVEAVFWNR--CYEPYAIER------ 104
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
L S D ++K + +Y +I VY+ F K+ + +
Sbjct: 105 -DTDLKSSLKDDGY---EVKSFKASLLYEPWEIETQSGGPYKVYSPFWKAAR-QIEIDDA 159
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLEL--HSPKVSKGMR--FVGGESAALGRVNEYFWKK 317
+ P + D+ +E +L P +KG + GE+ A R+ + +
Sbjct: 160 LPAPEKL----DIADYDGGEELESFDLLPKKPNWAKGWEDLWTPGEAGASERLGSFL--E 213
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS-YERERVANDSTYWVLFE 376
+ LK Y + RN P+ S + SP L G ISPR I+ + +R D L E
Sbjct: 214 EGLKGYGKLRNRPDLPNVS-RLSPHLHFGEISPRQIWHATQDVMDRRSSLGDDGMKFLSE 272
Query: 377 LMWRDY-----FRFISLKYGN--SLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
+ WR++ + F L N S F EY W + E W+ G TGYP++DA
Sbjct: 273 IAWREFSHNLLYHFPKLPSENWRSTFD-------EYPWKEPDGELEKWQKGQTGYPIVDA 325
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M+EL TG+M NR R IA SFL++ + + WR G WF L+D D +N W + AG
Sbjct: 326 GMRELWQTGYMHNRVRMIAASFLIKHLRLHWRHGEAWFRDTLVDADLANNSAGWQWVAGS 385
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G D R F+ Q + +D +G Y+ W+P+L+ L
Sbjct: 386 GADAAPYFRVFNPITQGEKFDPDGNYIRQWVPELREL 422
>gi|33860843|ref|NP_892404.1| DNA photolyase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33633785|emb|CAE18744.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 478
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 133/466 (28%), Positives = 212/466 (45%), Gaps = 63/466 (13%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN+AL+KA+ S+ + Y D +S + RA FL L
Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSDAITSTYIFDKNYSHDF-------NASSRAWFLGNSL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L N G L++ G P IIP LAK A V+ + E+N + ++ NL++
Sbjct: 60 QELGNNWKKMGSRLVLEEGDPVLIIPQLAKKIDAKFVFWNRSIEPYEINRDLEIKNNLKE 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ Q+ W + I +++ VY F K++++K + G
Sbjct: 120 ------------QNIQVIETWDHLLIEPLKIFSGNNNPYSVYGPFYKNLKSKINLLG--- 164
Query: 264 IPSSFGPPPSVVDWGSV--PLIEQLELHSP-----KVSKGMRFVG--------GESAALG 308
SF V + + E ++S K K ++F G GE+AA
Sbjct: 165 ---SFEQDKVVFQFKDIDNKFKENKAINSSDSVLEKFIKNIKFPGSNICPCRPGENAAQT 221
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKF-SPWLASGSISPRYIYEEVKSYERERVAN 367
+ + +K K+Y T F S L G+IS R ++ + + AN
Sbjct: 222 LLENFINEK---KIYSYNSARDFPSHNGTSFLSASLRFGTISIRKVWNATLNLNSD-FAN 277
Query: 368 DSTYWVL----FELMWRDYFRFISLKYGNSLFHL----GGPRKLE---YKWSQDQKLFES 416
Y + EL+WR++ Y + LFH GP + + + W + +LF+
Sbjct: 278 QENYLSIETWQKELVWREF-------YQHCLFHFPELEKGPYRKKWDHFPWQNNNELFQH 330
Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDP 476
W +G TG P++DA M++L+ TG+M NR R I SFLV+D+ W+MG + F L+D D
Sbjct: 331 WSNGETGVPIVDAAMRQLNSTGWMHNRCRMIVASFLVKDLICSWQMGEKKFMETLVDGDL 390
Query: 477 CSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL 522
+N G W + A G DP+ R F+ QA+ +D EY+ YW+P+L
Sbjct: 391 AANNGGWQWSASSGMDPKPLRIFNPYTQAKKFDPICEYIKYWIPEL 436
>gi|398812431|ref|ZP_10571188.1| deoxyribodipyrimidine photolyase [Variovorax sp. CF313]
gi|398077948|gb|EJL68890.1| deoxyribodipyrimidine photolyase [Variovorax sp. CF313]
Length = 500
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 127/455 (27%), Positives = 216/455 (47%), Gaps = 39/455 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++WFR DLRV DN AL +A + V+ + D P R +F+ E L
Sbjct: 16 LMWFRRDLRVDDNAALYRALRACRQVVCAFVFD-----KAILDALPSVDR-RVEFIRESL 69
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L L G L++RH + IP+LA+ G AV+A ++ + L + V L
Sbjct: 70 VELEAELRTLGGGLVVRHAAAVQEIPALARELGVQAVFANRDDEPDALERDARVFGALAN 129
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
++ + ST + +++ T + P+ + L V + F K +
Sbjct: 130 AGVAFHTYKDSTVFDRDEILTQTGQPYTVFTPYKRAWLAKVDSFFLKPYPVRSHADALAP 189
Query: 264 IPSSFGPP-PSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
P ++G P P++ + G E+ L + ++ G R G + E F+++ +
Sbjct: 190 SPQAYGEPVPALREIG----FEKSNLSALEIPTGTR-------GAGLLLEDFFER--IDR 236
Query: 323 YKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
Y E R+ + GP Y L G++S R + + A + + L EL+WR
Sbjct: 237 YAEARDFPAVRGPSY---MGVHLRFGTVSIRQLASLAHQLSLQGNAGAAVW--LSELIWR 291
Query: 381 DYFRFISLKYGNSLFHLGGPRKL---EY---KWSQDQ---KLFESWRDGCTGYPLIDANM 431
+++ I + + H GG K EY +W + +LF++W +G TGYPL+DA M
Sbjct: 292 EFYFQILAHFPH--VHAGGESKSFRPEYDRIQWHHGKHADQLFDAWCEGRTGYPLVDAAM 349
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+++ +G+M NR R + SFL +D+G+DWR G +F L D++ SN G W + + G
Sbjct: 350 LQINQSGYMHNRLRMVVASFLCKDLGLDWRRGEAYFALHLNDFELASNNGGWQWASSSGC 409
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
D + R F+ Q++ +DREG+++ +LPQL L
Sbjct: 410 DAQPYFRIFNPVTQSERFDREGKFIRRYLPQLAGL 444
>gi|117618175|ref|YP_855643.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559582|gb|ABK36530.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 473
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 134/458 (29%), Positives = 222/458 (48%), Gaps = 44/458 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++WFRNDLR+ DN AL A E V ++ + P SQ H K +R +FL+ +
Sbjct: 3 LIWFRNDLRLADNPALRHACAGDEPVAALFILSP--SQWRQH----KLAPIRQRFLLAQV 56
Query: 144 ADLRKNLMNRGLNL-LIRHGKPEEIIPSLA---KSFGAHAVYAQKETCSEELNVERLVRK 199
L + L G+ L L+R E+ +LA + G +YA + +EL ++ V
Sbjct: 57 DVLGRELAALGIPLHLLRVETFSEVPAALAELCRELGVTQLYANQAIEIDELRRDQAVSA 116
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + + + P +++ G+ + V+T F ++
Sbjct: 117 ALAEQTVGCHWLNGCCVLPPGRVLTGS------------GEMFKVFTPFSRAWLKALDED 164
Query: 260 GCI--RIPSSFGPPPSVVDWGSVPLIEQ--LELHSPKVSKGMRFVGGESAALGRVNEYFW 315
G + R P+ G P + W PL E+ ++ +++ R+ GE+ A R+N++
Sbjct: 165 GFVIHRPPAPRGEP---LPWQ--PLAERHFVDAALGELTADPRWPVGEAEASRRLNDFL- 218
Query: 316 KKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVK---SYERERVANDST 370
+ + Y ETR+ + G ++ SP+LA+G ISPR ++ Y + A
Sbjct: 219 -EQAVLDYGETRDFPAIAG---TSVLSPYLAAGIISPRQCVAALQQRLGYRPQSKAQPGF 274
Query: 371 YWVLFELMWRDYFRFISLKYGN-SLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
W L EL+WR+++R + ++ S+ P WS D F +W +G TGYP++DA
Sbjct: 275 VW-LNELIWREFYRHLLVQIPTLSMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDA 333
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M+ L+ TG+M NR R I SFL +D+ I WR+G ++F + L+D D +N G W + AG
Sbjct: 334 AMRCLNATGWMHNRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGT 393
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q Q +D +GE++ W+ +L LP
Sbjct: 394 GADAAPYFRVFNPTTQGQRFDPQGEFIRTWVSELADLP 431
>gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
Length = 493
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 135/463 (29%), Positives = 219/463 (47%), Gaps = 41/463 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+I W R DLR DN L +A +S+ ++ VY +DP+ T + FL E
Sbjct: 6 SIFWHRRDLRFGDNIGLFEASKNSKSLIGVYVLDPKLLDLNR-----TTSEAKNWFLGES 60
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +L+KN RG LLI +G P E+I LA+ A +Y + E+N ++ + + L
Sbjct: 61 LIELQKNWEIRGSRLLILNGDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLS 120
Query: 203 Q----------VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI 252
+ ++ + SN K+ N K+ +D I SS ++ + S
Sbjct: 121 KEKRKVYTFLDQLIVNPSNIKTNNDEPYKVYGPFYRKWIDLINITKSSENNL---IQTSE 177
Query: 253 EAKCTVRGCIRIPSSFGPPP--SVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRV 310
AK R SS + S + E L L+ + GES ++ ++
Sbjct: 178 TAKQLTGLNERELSSIKNSDLNYCITNKSKSIYELLSLNRFNKTNLCPCKPGESESIKQL 237
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK----SYERERVA 366
N + ++ Y + R ++ + ++ S L+ G+IS R ++ + + + E
Sbjct: 238 NSFI-HSGVINSYNKAR-DIPSLENTSHLSAALSLGTISCRVVWNGAQVSKNATDDEYKI 295
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHL----GGPRK---LEYKWSQDQKLFESWRD 419
N W+ EL WR++ Y N+L + GP + L++ W FE+W D
Sbjct: 296 NSIDTWIK-ELAWREF-------YQNALINFPELEKGPYREKWLDFPWQNRPDWFEAWGD 347
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TG P+IDA M++L +G+M NR R I SFLV+D+ IDWR+G +F L+D D +N
Sbjct: 348 GLTGIPIIDAAMRQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAAN 407
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL 522
G W + A G DP+ R F+ +QA +D +GEY+ W+P+L
Sbjct: 408 NGGWQWSASSGMDPKPMRIFNPFRQASKFDEDGEYIRKWIPEL 450
>gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4]
gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4]
Length = 483
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 126/448 (28%), Positives = 211/448 (47%), Gaps = 30/448 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+WFR DLR+ DN ALL A ++ V+P+Y +P G G +A +L L
Sbjct: 10 ILWFRKDLRLDDNRALLAALQAAGPVIPLYIREPEE------MGTGPLGPAQAWWLHHSL 63
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L ++L + G L++R G P +++ L + G+ AV+ + + ++ ++ L+
Sbjct: 64 VSLDQSLQSYGSRLVLRRGPPGQVLRHLIEETGSKAVHWNRRYDPSGMAIDAELKAALRS 123
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
L + S+ H K+ G+ PF VYT F +++E + +
Sbjct: 124 DGLEATSHAGFLLHEPSKVKTGSGG------PFR------VYTPFWRALEKQGDPPPPVE 171
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRVNEYFWKKDL 319
P + P W +E +L K F GE A +++++
Sbjct: 172 RPKTLHNP---AHWPDSDRLEDWQLLPTKPDWAKEFSEIWTPGEPGAQDKLSQFI--DHG 226
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
LK Y+ R+ P +++ SP LA G ISP I+ + V+ D EL+W
Sbjct: 227 LKGYRTQRDFPALP-HTSGLSPHLALGEISPARIWHATIGLGDD-VSTDDYVHFRKELVW 284
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
R++ + + + R ++ W ++ + +W+ G TGYP++DA M++L G
Sbjct: 285 REFSYHLLFHFADLASQNWNDRFNDFPWKKNAEFLSAWQRGQTGYPIVDAGMRQLWRHGV 344
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRY 498
M NR R I SFL++D+ IDWR G WF L+D DP SN +W + AG G D R
Sbjct: 345 MHNRVRMIVASFLIKDLMIDWREGEAWFRYTLVDADPASNAASWQWVAGSGADASPFFRI 404
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALP 526
F+ Q++ +D +G+Y+ ++P+L LP
Sbjct: 405 FNPITQSEKFDPDGDYIRQFVPELAKLP 432
>gi|422006662|ref|ZP_16353651.1| deoxyribodipyrimidine photolyase [Providencia rettgeri Dmel1]
gi|414098878|gb|EKT60523.1| deoxyribodipyrimidine photolyase [Providencia rettgeri Dmel1]
Length = 480
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 139/510 (27%), Positives = 238/510 (46%), Gaps = 63/510 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++WFRNDLRV DN+AL A D V+ ++ P+ Q + F+ +
Sbjct: 9 LIWFRNDLRVTDNKALSSACADPDAKVIALFTATPKQWQQH------DMAERQISFIHQN 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA+L+ +L G+ L+ + + + A + YA+ + ++ L R N
Sbjct: 63 LAELQNSLAELGIPLVC------QTVANFADAAQWVLDYAKTQQ-ADALFFNRQYEWN-- 113
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD--------IPFDHSSLPDVYTHFRKSIEA 254
Q ++ N P G ++ DD + + VYT FR++
Sbjct: 114 ----EKQRDEWLINQPH-----GLHIHAFDDYLLLPPGSVTTQKGEMYQVYTPFRRAFLT 164
Query: 255 KCTVRGC--IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
+ TV C +R P P ++ D S PL H P + +F GE +AL R+ +
Sbjct: 165 QLTVTDCRSLRAPEKRAAPINI-DRAS-PLFP----HQP-IEDFQQFPAGEKSALTRLRQ 217
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV--ANDST 370
+ +K + Y+ R ++ D +++ SP+LA G +SPR + +++ + + +
Sbjct: 218 FCSQK--VGDYQNDR-DIPSIDGTSQLSPYLAVGVLSPRQCFNRLQAENPQVLDHPDSGA 274
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPLIDA 429
+ L EL+WR+++ + + + H ++ W+ F +W+ G TGYP++DA
Sbjct: 275 FTWLNELVWREFYSHLLVAFPRLSRHQPFIEWTQHIHWNDSSTDFAAWKTGQTGYPIVDA 334
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ TG+M NR R I SFLV+D+ IDWR G ++F + LLD +N G W + A
Sbjct: 335 AMRQLNTTGWMHNRLRMIVASFLVKDLLIDWRKGEKYFMSQLLDGSLAANNGGWQWSAST 394
Query: 490 GNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------GGSYIE 539
G D R F+ Q + +D +G ++ +WLP+L+ +P + + P +Y E
Sbjct: 395 GVDASPWFRIFNPTTQGKKFDAQGAFIRHWLPELQQVPDKYIHTPYEWAVISNTALNYPE 454
Query: 540 QIVSLKHGNINQNRNQNDSLTRTGRRNNFK 569
IV K Q R + TG+RN K
Sbjct: 455 PIVDHK-----QARLATLAAFETGKRNGLK 479
>gi|448688386|ref|ZP_21694219.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
gi|445779447|gb|EMA30377.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
Length = 465
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 124/452 (27%), Positives = 209/452 (46%), Gaps = 45/452 (9%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
W R DLR DN A L A S+ V+PV+ D H G P R F+++ L
Sbjct: 5 WHRRDLRATDN-AGLAAATPSDPVVPVFIFD---RAVLDHAGPP-----RVAFMLDALDS 55
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LR+ NRG +L+I G P ++P LA +GA V K+ + VR+ L
Sbjct: 56 LREWYRNRGSDLVIAEGDPTSVLPELATEYGAEKVTWGKDYSGLARERDAAVRQALDDAD 115
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
++ ++ + H ++ TT D P+ V+T+F + + +P
Sbjct: 116 VAREAVQNAVLHEPGEI---TTN---DGDPYS------VFTYFGRKWHDREK-----EVP 158
Query: 266 SSFGPPPSV-----VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
PPS VD ++P + L P+ G A +N++ +
Sbjct: 159 YD---PPSTDELAEVDGDALPTLADLGFEEPEADVP---PAGTDEARALLNDFLDEN--- 209
Query: 321 KVYK-ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN--DSTYWVLFEL 377
VY+ E R + + +++ S L G+I R +Y+ + + N +S +L
Sbjct: 210 -VYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRTQDAKEGAGGNHHESVREFQSQL 268
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
WR+++ + + + + + +W D++L ++W+DG TGYP++DA M++L
Sbjct: 269 AWREFYTQVLFAHPHVVTSNYKSYENSIEWENDEELLQAWKDGETGYPIVDAGMRQLRAE 328
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED- 496
+M NR R I SFL +D+ IDWR G EWF L+D+D ++ G W + A G D +
Sbjct: 329 AYMHNRVRMIVASFLTKDLLIDWRYGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYF 388
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q ++YD + EY+ ++P+L+ E
Sbjct: 389 RIFNPMTQGEDYDPDAEYIKKYVPELRDAASE 420
>gi|171060633|ref|YP_001792982.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
gi|170778078|gb|ACB36217.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
Length = 511
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 133/466 (28%), Positives = 214/466 (45%), Gaps = 46/466 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
A+VW R DLR+ D+ AL A S++ V + D TT P+ R +F+
Sbjct: 32 AALVWLRRDLRLDDHAALHHALRSAKKVWCAFIFD-----TTILDALPRADR-RVEFIHH 85
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ +L L G L++RHG P + IP++A + G AV+ ++ + + VR L
Sbjct: 86 GIVELDGLLRAHGSGLIVRHGDPLQEIPAIAGALGVQAVHINRDYEPAAVARDAQVRGAL 145
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT---V 258
++ S+ ++ D+I S V+T ++ + K +
Sbjct: 146 AHAGIALHSHKDQV------------IFETDEILTMAGSPFSVFTPYKNAWLKKLDGYYL 193
Query: 259 RG--CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
R R + P P+ +D G VP + L+ ++ R G S + ++ +
Sbjct: 194 RAYPVQRHIGALAPVPAALDRG-VPTLNDLDFLPTDMAA--RLHPGASGGATLLLDFLER 250
Query: 317 KDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS---TY 371
D Y +TR+ + GP Y S L G++S R ++ ER+ S
Sbjct: 251 IDR---YADTRDFPAIKGPSY---LSVHLRFGTVSIR----QLARLAHERMVGGSRGAEV 300
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQD---QKLFESWRDGCTGYPLID 428
W L EL+WRD++ I + + H P +W ++LF +W +G TGYP+ID
Sbjct: 301 W-LSELIWRDFYHQILHHHPRVVTHCYKPEYEALRWEHGKHAEQLFAAWCEGRTGYPIID 359
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M +L+ TG+M NR R + SFL +D+GIDWR G +F L DYD +N G W + A
Sbjct: 360 AAMLQLNRTGYMHNRLRMVVASFLTKDLGIDWRRGEAYFALQLNDYDLAANNGGWQWAAS 419
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G D + R F+ Q+ +D EG ++ +LPQL L + + P
Sbjct: 420 TGCDAQPYFRIFNPISQSLRFDAEGRFIRRYLPQLADLSRAAIHAP 465
>gi|398817002|ref|ZP_10575637.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
gi|398031514|gb|EJL24900.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
Length = 484
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 135/461 (29%), Positives = 217/461 (47%), Gaps = 49/461 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
AIVWFR DLR+ D+ AL A + + ++PVY V+ ++ G R
Sbjct: 2 TAIVWFRRDLRLHDHAALHAAMLAGDPIIPVYIVEDSLCRSA------AVGDKRLYAHFA 55
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+A L L G LLIRHG P++++ LA+ GA + ++ E + LV +
Sbjct: 56 AIAALGDALAQLGGRLLIRHGNPQQVLCQLAQETGADKLLFNRDYAPEARKRDELVSE-- 113
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
VLSSQ H LI ++ +I + V+T +R+ + R
Sbjct: 114 ---VLSSQG---VVVHTCKDLI----LHEPGEIMTKQRTPYAVFTPYRRVWQTLPKDR-- 161
Query: 262 IRIPSSFGPPPSVVDWG-----------SVPLIEQLELHSPKVSKGMRFVGGESAALGRV 310
P P W VP +E P ++ GE AA R+
Sbjct: 162 --------PFPQPTRWNLFDRLKELASEPVPTVEAFGRKRPIGTEWEMEQFGERAAQKRL 213
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY---EEVKSYER-ERVA 366
++ + YKE R+ M G + +++ S L +G++S R +Y +EV + R E+V
Sbjct: 214 QQFL--NGDIYTYKEKRD-MPGVNATSRLSFALNTGTLSIRTVYHSVQEVLARARGEQVT 270
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
+ + L EL+WR++++ + + ++ H P+ W + LF W G TGYP+
Sbjct: 271 SIEAF--LTELIWREFYQQVLYFHPHTTDHAYLPQFETVAWENRKDLFTRWCHGETGYPI 328
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA MK+L+ TG+M NR R I SFL +D+ +DWR G +F L+D+D +N G W +
Sbjct: 329 VDAAMKQLNETGWMHNRLRMITASFLTKDLLVDWRWGMAYFAQQLVDFDEAANIGGWQWS 388
Query: 487 AGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
A G D + R F+ Q + +D +G +V +LP L+ +P
Sbjct: 389 ASTGTDAQPYFRIFNPVTQGEKFDPDGAFVKKYLPVLREVP 429
>gi|94501522|ref|ZP_01308040.1| Deoxyribodipyrimidine photolyase [Bermanella marisrubri]
gi|94426340|gb|EAT11330.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
Length = 478
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 130/466 (27%), Positives = 227/466 (48%), Gaps = 40/466 (8%)
Query: 85 VWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI-ECL 143
VWFR DLRV DN AL A + + + YC+ Q H +LR + LI + L
Sbjct: 7 VWFRRDLRVHDNPALFHAMKNGQCI-AFYCL--AQKQWDEH-----QVSLRQRSLIRQQL 58
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIP----SLAKSFGAHAVYAQKETCSEELNVERLVRK 199
DL ++L G+ L++ + IP S+ + + ++ E E+ + + V +
Sbjct: 59 EDLTQSLAALGVPLIVIDTADFKSIPKTFVSVLQQYNVEQLFCNAEYEVNEVALTKNVTE 118
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV- 258
LQQ + K + LI + + D P+ V+T F+K+ A+ +
Sbjct: 119 ALQQ------QDIKCHEYHDQCLIQPGVIVNKQDQPYK------VFTAFKKAYLAQLDIY 166
Query: 259 -RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
R +P P D ++ I Q+++ + G E AL ++E+ K
Sbjct: 167 MRDLYPLPKKQQAPKVKTDISALQSIAQVDIDP--------WQGSEQVALDALDEFC--K 216
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
D +K YK R+ + D ++ SP+LA GS+S R ++ + + EL
Sbjct: 217 DRIKAYKRDRD-IPSLDGTSTLSPYLAIGSLSVRQCWQMSQQVSPSGSKPEGIATWQSEL 275
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
+WRD++R + + + + ++ ++ W +DQ LF++W DG TGYPL+DA M++L+
Sbjct: 276 IWRDFYRHLIYFFPHVCQYKAFKQETDHLPWKKDQALFQAWCDGRTGYPLVDAAMRQLNQ 335
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG+M NR R +A FL + + IDWR+G +F L+D D SN G W + A G D
Sbjct: 336 TGWMHNRLRMVAAMFLSKHLFIDWRLGEAYFMQQLIDGDLASNNGGWQWSASTGVDAVPY 395
Query: 497 -RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQI 541
R F+ +Q++ +D +G ++ ++P+L +L +R + P ++++
Sbjct: 396 FRIFNPIRQSERFDSKGTFLRQYVPELASLDDKRIHNPDPITVKKL 441
>gi|121606238|ref|YP_983567.1| deoxyribodipyrimidine photo-lyase [Polaromonas naphthalenivorans
CJ2]
gi|120595207|gb|ABM38646.1| deoxyribodipyrimidine photo-lyase type I [Polaromonas
naphthalenivorans CJ2]
Length = 477
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 131/459 (28%), Positives = 210/459 (45%), Gaps = 35/459 (7%)
Query: 85 VWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLA 144
+WFR DLR+ DN AL A S E V + D + PK R +F+ E L
Sbjct: 1 MWFRRDLRLQDNAALHHALKSCEQVFCAFVFDRAILDS-----LPKADR-RVEFIRESLV 54
Query: 145 DLRKNLMNRGL--NLLIRHGKPEEIIPSLAKSFGAHAVYA--QKETCSEELNVERLVRKN 200
DL + L L LLIRHG + +P+LA AV+A E CS + E V+
Sbjct: 55 DLNRQLAKLALPAGLLIRHGTALDALPALASRLSVDAVFANHDDEPCSLARDAE--VQGL 112
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L+ ++ + + +++ + P+ + L V + + +
Sbjct: 113 LECAGVAFHTFKDHVIFERQEVLTLAGQPYTVFTPYKKAWLKKVDAFYLQPYPVEKYASA 172
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
P+ + VP + +L +S +R G A +++ D +
Sbjct: 173 LAARPAD--------ERQDVPALAELGFEKTNLS-ALRLPTGSQGAEALFDDFL---DRM 220
Query: 321 KVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
Y +TR+ + GP Y L G+IS R I + + +++ ++ L EL+
Sbjct: 221 PHYADTRDFPAVKGPSY---LGVHLRFGTISIRKI--TLNALAQQQTGSEGAATWLSELI 275
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQK---LFESWRDGCTGYPLIDANMKELS 435
WRD++ I + ++ P W Q +K LF++W +G TGYPL+DA M +L+
Sbjct: 276 WRDFYAQILANFPHAASSAFKPGYDAIAWEQGEKAELLFQAWCEGRTGYPLVDAAMAQLN 335
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R + SFLV+D+GIDWR G +F L D+D SN G W + A G D +
Sbjct: 336 QTGYMHNRLRMVTASFLVKDLGIDWRWGERYFAEKLNDFDLASNNGGWQWAASTGCDAQP 395
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q++ +D +G+++ +LP L LPK + P
Sbjct: 396 YFRIFNPVSQSEKFDADGKFIRKYLPVLAKLPKAALHSP 434
>gi|410671657|ref|YP_006924028.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
gi|409170785|gb|AFV24660.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
Length = 459
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 203/452 (44%), Gaps = 49/452 (10%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+I FR DLR+ DN L A +SS+ V+P + DPR + ++ GF QFL+E
Sbjct: 8 SIFVFRRDLRIDDNLGLRAAVESSDEVIPCFIFDPRLA-SSKRLGFNPNAF---QFLLES 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DL++ +G L + G E+II LA GA AV+ ++ + R +
Sbjct: 64 LEDLQRQFKAKGGRLYLFSGIAEDIIGQLAGKLGADAVFVNEDYTPFSRRRDEATRNTCK 123
Query: 203 QV-VLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ V +Q +D N L Y + F FR + ++
Sbjct: 124 GLDVKFTQVHDCLLNEQGTVLTQQGRPY----VVFSQ--------FFRAGSKRNISIPSM 171
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ + P + + P E+L P ++ + GG + AL +L+
Sbjct: 172 LAEGKFYTGEPGIEE---TPASEKL---LPLKNEKLFSRGGRTQAL----------QVLE 215
Query: 322 VYKETRNEMLGPDY-----STKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
N DY +T S G+IS R Y Y R + D ++ +
Sbjct: 216 DLSRFENYAAEHDYPSLQGTTGLSAHNKLGTISIREFYH----YVRNELGEDHP--LIRQ 269
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L WRD+F I+ + + + +W + F +W G TG+P++DA M++L+
Sbjct: 270 LYWRDFFTHIAHHFPSVFGQSFKEKFRNIQWGYNNSFFHAWCSGSTGFPIVDAGMRQLNA 329
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TGFM NR R I SFLV+D+ IDW +G +F + L+DYDPC N GNW + A G D +
Sbjct: 330 TGFMHNRVRMIVASFLVKDLHIDWYLGERYFASKLVDYDPCVNNGNWQWSASTGADSQP- 388
Query: 497 RYFSIPK---QAQNYDREGEYVAYWLPQLKAL 525
YF I Q + YD + EY+ W+P+L+ +
Sbjct: 389 -YFRIFNPWLQQRKYDPDCEYIRKWVPELREM 419
>gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
Length = 477
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 140/467 (29%), Positives = 217/467 (46%), Gaps = 54/467 (11%)
Query: 75 LKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
+ R + IV FR DLR+ DN AL A + V+ +Y +D +TT G GA
Sbjct: 1 MSRQAQAPTIVLFRRDLRMGDNAALAAAAERGVPVVALYILD----ETTK--GLRAMGAA 54
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
+L LA L L G NL + HG+ E+ + + GA+ V+ + E+ V+
Sbjct: 55 SRWWLHHSLAALGDLLRKAGANLFLAHGRTEDAVAKAIDASGANCVFWNRRYDPSEVAVD 114
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
++ L++ L++ S D + H L G+ ++ V+T F K++
Sbjct: 115 ARLKAALREKGLTALSFDGALLHEPSLLKTGSGGFY------------KVFTPFWKAMAD 162
Query: 255 KCTVRGCIRIPSSFGPPPSVVDW----GSVPLIEQLELHS-PKVSKGMR--FVGGESAAL 307
K VR I P + W G + L E L S P + G+R + GE A
Sbjct: 163 KVDVRDPIDTPGQ------IDGWRGELGGLRLDELDLLPSKPDWAYGLRETWTPGEKGAQ 216
Query: 308 GRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN 367
R+ ++ + L Y+ R+ G +++ SP L G I+P I+ ++ R +
Sbjct: 217 ARLGQFI--EHGLANYERQRD-YPGQPSTSRLSPHLTFGEITPFQIFAALR-----RSKS 268
Query: 368 DSTYWVLFELMWRDYFRFISLKYGNSLFH---LGG----PRKLEYKWSQDQKLFESWRDG 420
T E+ WR++ + LFH L G P W D + +W+ G
Sbjct: 269 SGTSKFRAEIGWREFSYHL-------LFHNPDLSGRNFRPEFDAMSWRDDIRALRTWQRG 321
Query: 421 CTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNY 480
TGYP++DA M+EL TG+M NR R I SFL++D+ IDWR G +WF L+D D +N
Sbjct: 322 LTGYPIVDAGMRELWRTGWMHNRVRMIVASFLIKDLMIDWRHGEKWFWDTLVDADAANNP 381
Query: 481 GNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+W + AG G DP R F+ Q + +D G+YV +P++ ALP
Sbjct: 382 ASWQWVAGSGADPAPYFRIFNPVLQGEKFDPHGDYVRQHVPEISALP 428
>gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
Length = 499
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 131/461 (28%), Positives = 210/461 (45%), Gaps = 32/461 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ---TTYHFGFPKTGAL--RA 136
+VW R DLR DN AL A E V V+ D Q +H P T R
Sbjct: 13 TGLVWLRRDLRNTDNAALYYALKHCERVWCVFVFDTTILQPLVDAWHARHPDTQPQDRRI 72
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+F++ L +L + L G L++ +G P E++P LA G AV+A + + +
Sbjct: 73 EFILAALGELDEALRADGGGLIVLYGNPAELVPKLADELGVDAVFANHDYEPVAIERDGT 132
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
VR+ L + + + +++ G + P+ ++ L + K +
Sbjct: 133 VRERLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSAFDLKPYPVET 192
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
+ +PS F +P +EQL +P + G S A ++++ +
Sbjct: 193 YAKRLAALPSKFD--------RQLPTLEQLGF-APSNLGELNLPAGMSGAQRLLDDFMTR 243
Query: 317 KDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
D Y + R+ GP Y S L G++S R + + S W L
Sbjct: 244 ID---SYADRRDFPAAKGPSY---LSIHLRFGTVSIRTLARLAHEMSLQPDGQGSATW-L 296
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQD---QKLFESWRDGCTGYPLID 428
EL+WRD++ F+ L + L G + EY +W Q + F +W +G TGYPL+D
Sbjct: 297 SELIWRDFY-FMILAHHPRLAR-GASFREEYDRLRWEQGLQADEAFAAWCNGRTGYPLVD 354
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M +L+ TG+M NR R + SFLV+D+G+DWR+G +F L D+D +N G W + A
Sbjct: 355 AAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAAS 414
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D + R F+ Q++ +D EG ++ +LPQL LP +
Sbjct: 415 TGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSK 455
>gi|443320341|ref|ZP_21049448.1| deoxyribodipyrimidine photolyase [Gloeocapsa sp. PCC 73106]
gi|442789946|gb|ELR99572.1| deoxyribodipyrimidine photolyase [Gloeocapsa sp. PCC 73106]
Length = 478
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 130/462 (28%), Positives = 209/462 (45%), Gaps = 50/462 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ I W R DLRV DN L A S V+ +C D R +LI
Sbjct: 4 LIIFWHRRDLRVSDNLGLSLACSDSSRVIGCFCFD------LDLLSGDDIAPARISYLIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+ RG LL+ GKP EIIP L A VY + +RLV++ L
Sbjct: 58 CLQLLQAQYQERGGELLLLRGKPTEIIPRLGIQLQARGVYWNLDVEPYAKERDRLVQREL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+Q + +K +W + + VYT F K+
Sbjct: 118 EQQKIV------------VKTVWDQLLQSPGQVLTKSGDPYQVYTPFWKNWSQHTK---- 161
Query: 262 IRIPSSFGPPPSV---VDWGSVPLIEQLELHSPKVSKGMRFV---------GGESAALGR 309
SS PP++ + + L+++L L S+ + + GE AA R
Sbjct: 162 ----SSPVAPPALLHKITENELTLVQELVLPQLPSSQELGYSYWDYPLPLKPGEIAAKQR 217
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
++++ ++ Y+E RN + +++ S L G+I R +++E + + +
Sbjct: 218 LSDFC--STAIEAYQEQRN-FPAIEGTSQLSGALKLGAIGIRTVWQETMEIQLHSCSIEG 274
Query: 370 TYWVLF---ELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTG 423
+ EL WR++++ +L + L GP + +K W + F++W +G TG
Sbjct: 275 LQGIQTWQQELCWREFYQH-ALYFFPDL--ATGPYRESFKDFPWQNNPSHFQAWCEGNTG 331
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YP++DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N G W
Sbjct: 332 YPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLLINWQWGEKYFMQNLYDGDLSANNGGW 391
Query: 484 TYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ A G DP+ R F+ QAQ +D E EY+ WLP+L ++
Sbjct: 392 QWSASSGMDPKPLRIFNPASQAQKFDPEAEYIRQWLPELSSV 433
>gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
53653]
gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
53653]
Length = 445
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 131/458 (28%), Positives = 209/458 (45%), Gaps = 47/458 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+I F +DLR+ DN L A +++ V+P++ VD R + F P R FL +
Sbjct: 9 TSIAVFTSDLRLRDNPVLHAALRAADRVVPLFVVDRRVAAAG--FAVPN----RVAFLRD 62
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CLADL L RG L++R G E I +A+ A V+ + E +R+ L
Sbjct: 63 CLADLDAGLRERGGRLIVRTGDAVEEIRRVAEQVDAGEVHIAGGVSAFAGRREARLREAL 122
Query: 202 ------QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
VL++ + T P K DH + V+T + ++ +
Sbjct: 123 GGALRVHGAVLTAA--EPGTVTPSGK---------------DHFA---VFTPYFRAWQG- 161
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+R P PP V S PL L S S G+ GGE A R++ W
Sbjct: 162 VELRRPFAAPRGVRVPPGVR---SEPLSALSLLGSGSPSPGLP-EGGERAGRRRLDA--W 215
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ L Y + ++++ G D +++ SP+L G +SP + + + +
Sbjct: 216 LRSGLGAYADRQDDLAG-DATSRLSPYLHFGCLSPVELVHRAR-----KSGGPGADAFVR 269
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
+L WRD+ + ++ PR +W D +W+ G TGYP++DA M++L+
Sbjct: 270 QLAWRDFHHQVLAARPDASHTDYRPRG--DRWRSDDAAVAAWKAGRTGYPIVDAGMRQLA 327
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
G+M NR R + SFL + + +DWR+GA F L+D D +N NW + AG G D R
Sbjct: 328 AEGWMHNRARLLVASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP 387
Query: 496 DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+R + QA+ +D +G YV W+P+L LP + + P
Sbjct: 388 NRVLNPLAQARRFDPDGTYVRRWIPELADLPGRQVHTP 425
>gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
Length = 477
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 145/508 (28%), Positives = 243/508 (47%), Gaps = 59/508 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN+AL A D + V+ VY P Q H P+ A FL +
Sbjct: 6 LVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPE--QWATHNVSPRQIA----FLHQN 59
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE-------ELNVER 195
L +L+ L RG+ L+ + A S +AQ++ + ELN ER
Sbjct: 60 LVELQHALAKRGIPLICHTAA------TFADSVKWLLDFAQQQNATGLYFNHQYELN-ER 112
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
L + L+Q SQ + T L L G+ D + VYT FR++ ++
Sbjct: 113 LRDEQLRQ---QSQHLNILTYDDALLLPPGSVTTQKGD-------MYQVYTPFRRAFLSQ 162
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQ---LELHSPKVSKGMRFVGGESAALGRVNE 312
+ P+ P P G+ +E L +H V +F+ GE AAL ++ +
Sbjct: 163 LMMSDFRSFPA---PKPR----GAALAVENTHPLFVHQ-SVETSPQFIAGEHAALAKLRQ 214
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPR-----YIYEEVKSYERERVAN 367
+ + ++ Y+ R ++ + +++ SP+LA G +SPR + E + ++ +
Sbjct: 215 FC--SERVQDYQRDR-DIPAINGTSQLSPYLALGVLSPRQCVNRLLAENPQVFDSQESGG 271
Query: 368 DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPL 426
S W L EL+WR+++ + + + H + ++ +W+ D +F +W+ G TGYP+
Sbjct: 272 FS--W-LNELIWREFYSHLLVAFPRLCRHQPFIKWTQHIQWNPDDAIFSAWKSGQTGYPI 328
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ TG+M NR R I SFLV+D+ +DWR G +F + L+D +N G W +
Sbjct: 329 VDAAMRQLNQTGWMHNRLRMIVASFLVKDLLVDWRKGEHYFMSQLIDGTLAANNGGWQWS 388
Query: 487 AGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLK 545
A G D R F+ Q + +D +G ++ WLP+L+ +P++ + P VSL
Sbjct: 389 ASTGVDASPWFRIFNPTTQGKKFDPQGTFIREWLPELRDVPEKFIHEPHTWAESHQVSLN 448
Query: 546 HGNINQNRNQNDSLT----RTGRRNNFK 569
+ + Q +T G+R + K
Sbjct: 449 YPTPIVDHKQARLMTLEAFEAGKRKSIK 476
>gi|376004880|ref|ZP_09782483.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
gi|375326730|emb|CCE18236.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
Length = 474
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 131/458 (28%), Positives = 218/458 (47%), Gaps = 44/458 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A + V+ V+C+DP +R ++I
Sbjct: 4 LILFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAI------LSGDDIAPVRVAYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+++ G LLI P + + LA + GA AVY ++ +R V ++L
Sbjct: 58 CLQCLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVRG 260
+V + +++ W ++ + I F S P VYT + + +
Sbjct: 118 TEVGI------------KVETFWDQVLHSPEAI-FTGSKEPYKVYTPYWRKWIQQPKPEP 164
Query: 261 CIRIPS---SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
C + S + + ++ G++ L +L S+ GE+AA R+ + F +
Sbjct: 165 CDTLKSRGLTEAQEKAALEAGAIALPTAKDLGF-IWSEPFILEPGETAASDRL-QLFCDR 222
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWVL 374
+ + Y + RN D ++ SP L G+I R +++ E+ + R A D
Sbjct: 223 AIYE-YDQGRN-FPAIDGTSLLSPALRFGAIGIRTLWQKTQEIMALTRSDEARDHIQTWQ 280
Query: 375 FELMWRDYFRFISLKYGNSLFHL-----GGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
E+ WR++ Y +L+H G R+ + WS +Q+ F++W G TGYP++
Sbjct: 281 QEIAWREF-------YQQALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIV 333
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D SN G W + +
Sbjct: 334 DAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSS 393
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G DP+ R F+ QAQ YD E EY+ WLP+L+ L
Sbjct: 394 SSGMDPKPLRIFNPASQAQKYDPEAEYIRQWLPELRNL 431
>gi|293397249|ref|ZP_06641522.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
gi|291420269|gb|EFE93525.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
Length = 476
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 218/459 (47%), Gaps = 35/459 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLRV DN+AL A D V+ V+ P+ + + A +A F+
Sbjct: 5 LVWLRNDLRVTDNQALYAACRDPQATVMAVFIATPQQWRQHH------MAARQAAFIHAT 58
Query: 143 LADLRKNLMNRGLNLLIRHGKP-EEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L++ L RG+ L+ + + LA A V A ELN R R+
Sbjct: 59 LRQLQQALAQRGIPLVTQQCDDFAAAVDWLADFCQASHVDALFYNRQYELNERRRDRQLE 118
Query: 202 QQV--VLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
Q++ +++ Q+ D S P ++ G MY + YT FR++ A+
Sbjct: 119 QRLNGMVNCQAFDDSLLLPPGSVLSGNGEMYKM-------------YTPFRRAFLARLAE 165
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
+P+ S W ++ + + ++ G F GE AAL R+ + +
Sbjct: 166 SDIASLPAP--AQRSCGQWQAITPPAPFDYPAAELDDG--FPAGEEAALRRLRHFC--RQ 219
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN--DSTYWVLFE 376
++ Y R ++ D ++ SP+LA G++SPR +++ + +AN + L E
Sbjct: 220 QVQDYHHQR-DIPAVDGTSVLSPYLAVGALSPRQCVNRLRAECPDMLANPHGGAFCWLNE 278
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
L+WR+++R + + H + +W+ F +W+ G TGYP++DA M++L+
Sbjct: 279 LIWREFYRHLLVANPALCRHRPFIAWTDRVRWNPAADNFLAWQQGRTGYPIVDAAMRQLN 338
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R IA SFLV+D+ IDWR G +F + LLD D +N G W + A G D
Sbjct: 339 QTGWMHNRLRMIAASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAP 398
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +D +G ++ WLP+L +P + P
Sbjct: 399 YFRIFNPTTQGKRFDPQGSFIRKWLPELADVPDNELHQP 437
>gi|429099734|ref|ZP_19161840.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 582]
gi|426286074|emb|CCJ87953.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 582]
Length = 473
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 211/450 (46%), Gaps = 32/450 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLRV DN AL A D V+ ++ P+ Q H P+ +A F+ +
Sbjct: 5 LVWFRADLRVFDNLALAAACRDPDARVIGLFIATPQ--QWRDHTLAPR----QAAFIWQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKP-EEIIPSLAKSFGAHAVYAQKETCSEELNVER---LVR 198
L L++ L RG+ L R + +LA H V A ELN R V
Sbjct: 59 LEALQQALAKRGIPLFTREAHDFAAAVETLATFCDEHQVSALFYNYQYELNEARRDAAVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ L + V + Q D S P ++ G+ + P+ + L R+ E +
Sbjct: 119 RRLAERV-ACQGFDDSVMLPPGSVVTGSGEMYKVFTPYSRAFL-------RRLGEG---L 167
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
C+ P P ++ D VP + + + + + F GE AAL R+ E+ +
Sbjct: 168 PPCVNAPKP-RPGGAISD---VPALAPFD-YPCETPDALLFPAGEEAALQRLREFC--QT 220
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
Y E R+ ++ SP+LA G +SPR + + + DS L EL+
Sbjct: 221 AAGDYPEKRD-FPAIRGTSLLSPYLAIGVLSPRQCLHRLLAEHPRALEGDSGAVWLNELI 279
Query: 379 WRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
WR+++R + + + H W Q+ LFE+W +G TGYP++DA M++++ T
Sbjct: 280 WREFYRHLIVAWPRLCRHQPFVDWTARVAWQQNDALFEAWCEGRTGYPIVDAAMRQMNTT 339
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED- 496
G+M NR R I SFLV+D+ +DWR G +F + L+D D +N G W + A G D
Sbjct: 340 GWMHNRLRMITASFLVKDLLVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYF 399
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q Q +D +G+++ W+P+L +P
Sbjct: 400 RIFNPTTQGQRFDADGDFIRRWVPELSHIP 429
>gi|409400169|ref|ZP_11250320.1| deoxyribodipyrimidine photo-lyase [Acidocella sp. MX-AZ02]
gi|409130775|gb|EKN00515.1| deoxyribodipyrimidine photo-lyase [Acidocella sp. MX-AZ02]
Length = 467
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 133/460 (28%), Positives = 212/460 (46%), Gaps = 52/460 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ DN AL A + +++L +Y +D R G +L L
Sbjct: 4 LVWFRNDLRLADNPALHAAAAAGDVIL-LYILDER------------AGGASRWWLHHSL 50
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+ L + RG L++R G EII L K+ AV+ + +R + L++
Sbjct: 51 SALGAEIAARGGRLVLRRGDATEIITGLVKAHKVAAVHVARAYEPAWREADRALDAALKR 110
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ H L T+++H + I + VYT F K+ + +
Sbjct: 111 L--------DCGLHRHLS----TSLFHPERITTKAGGMYGVYTPFSKACQEAGVPETLLP 158
Query: 264 IPSSFGPPP----SVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKK 317
+PS+ P + DWG +P+ P + GMR + GE+ A R+ +
Sbjct: 159 VPSALLGPKIESEDLADWGLLPI-------RPDWAGGMRAEWTPGEAGAKARLEAFL--A 209
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
++ Y R+ + G ++K SP G ISPRY++ R A + L EL
Sbjct: 210 GPVQDYATARD-IPGRHGTSKLSPHAHFGEISPRYVWHRA----RAAGAGEGVETFLKEL 264
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDANMKEL 434
+WR++ I+L + + P + E+K W ++ +W+ G TG P++DA M+EL
Sbjct: 265 LWREFS--INLLWQHPDLRRE-PIRREFKDFPWETNRDRLTAWQTGKTGIPIVDAGMREL 321
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+TG+M NR R I S+LV+ + I W+ G WF L + D +N +W + AG G D
Sbjct: 322 WITGWMHNRVRMICASYLVKHLLIPWQAGEAWFWDTLCEADEAANGASWQWVAGCGADAA 381
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q Q +D +G YV +LP LK LP + + P
Sbjct: 382 PYFRVFNPVLQGQKFDGDGAYVRRFLPALKRLPDKYIHAP 421
>gi|119509710|ref|ZP_01628855.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
gi|119465576|gb|EAW46468.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
Length = 482
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 217/457 (47%), Gaps = 34/457 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L+ A + S V+ V+C+DP+ R +++
Sbjct: 4 LILFWHRRDLRISDNTGLVAARERSAKVVGVFCLDPQI------LSRDDVAPARVTYMMG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L++ G LLI HG P E+IP+LAK+ A AV+ +VE +
Sbjct: 58 CLQALQQRYAQVGSQLLILHGNPVEVIPALAKALNAKAVFWN-------WDVEPYSQTRD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ ++ +SN H W ++ D+I S VY+ F K+ +K +
Sbjct: 111 RTIIDILKSNSIEFLHEN----WDQILHAPDEIRTGTKSPYTVYSPFWKNWSSKPKAKSV 166
Query: 262 IRIPSSFGPPPS----VVDWGSVPLIEQLELHSPKVSKG-MRFVGGESAALGRVNEYFWK 316
+ ++ G + G +PL +L + G + GE+AA R+ E+
Sbjct: 167 ETLQNAAGLTEAEQEIAKQAGVIPLPTARDLGF--IWDGELSISPGEAAAQERLQEF--T 222
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWV 373
+ Y+E RN + G D +++ S L G I R ++E E + + R S
Sbjct: 223 DSAITEYQEQRN-LPGVDGTSRLSAALKFGVIGIRQVWEATLEAQEFSRSEETAASIRTW 281
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL WR++++ Y G R + W + + F++W +G TGYP++DA M
Sbjct: 282 QQELAWREFYQHA--MYNFPELAEGAYRDTFKNFPWQNNDEYFQAWCEGRTGYPIVDAAM 339
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ G+M NR R I SFL +D+ I+ ++G ++F L+D D +N G W + G
Sbjct: 340 RQLNEMGWMHNRCRMIVASFLTKDLMINPQLGEKYFMQKLIDGDLSANNGGWQWSTSSGM 399
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
DP+ R F+ QAQ +D EGEY+ W+ +L+++ E
Sbjct: 400 DPKPLRIFNPASQAQKFDGEGEYIRQWVSELRSVDTE 436
>gi|334121002|ref|ZP_08495078.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
gi|333455721|gb|EGK84364.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
Length = 504
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 202/455 (44%), Gaps = 35/455 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A S V+ ++C+D R ++I
Sbjct: 4 LILFWHRRDLRISDNIGLATARQQSAKVVGIFCLDRNI------LNRDDVAPARVTYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L G LLI P IP LA + A AV+ ++ + V L
Sbjct: 58 CLQKLSSRYRELGSQLLIIQDDPSLGIPKLAIAINAKAVFWNRDVEPYAKQRDLSVSNAL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
QQ + Q+ W ++ D+I + +YT F K +K +
Sbjct: 118 QQAGIKVQN------------FWDQVLHAPDEIRSGTKTPYTIYTPFWKKWNSKPKAQPV 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLI-EQLELHSPKVSKGMRFV--------GGESAALGRVNE 312
+P ++ + + L E + + + + F+ GE AA ++ E
Sbjct: 166 ETLPITYLELMTGLTTEEQELANEAGAIETVPTASSLGFIWENPLVIEPGEDAAQQKLEE 225
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK----SYERERVAND 368
+ + Y+ RN + +++ S L G+I R +++ + + E
Sbjct: 226 FC--DRAIYQYQGQRNSP-AINGTSQLSAALKFGAIGIRTVWQATQIVMDTCHSEEAYTS 282
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
W E+ WR++++ + P ++ W D+KLF++W G TGYP+ID
Sbjct: 283 IRTWQQ-EIAWREFYQHAMYNFPELADGPYRPAFKDFPWDNDEKLFQAWCRGKTGYPIID 341
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D C+N G W + A
Sbjct: 342 AAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKLIDGDLCANNGGWQWSAS 401
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
G DP+ R F+ QAQ +D EGEY+ +W+P+L+
Sbjct: 402 SGMDPKPLRIFNPATQAQKFDPEGEYIRHWVPELR 436
>gi|423065610|ref|ZP_17054400.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
gi|406713053|gb|EKD08228.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
Length = 474
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 217/458 (47%), Gaps = 44/458 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A + V+ V+C+DP +R ++I
Sbjct: 4 LILFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAI------LSGDDIAPVRVAYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+++ G LLI P + + LA + GA AVY ++ +R V ++L
Sbjct: 58 CLQCLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVRG 260
+V + +++ W ++ + I F S P VYT + + +
Sbjct: 118 TEVGI------------KVETFWDQVLHSPEAI-FTGSKEPYKVYTPYWRKWIQQPKPEP 164
Query: 261 CIRIPS---SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
C + S + + + G++ L +L S+ GE+AA R+ + F +
Sbjct: 165 CDTLKSRGLTEAQEKAAREAGAIALPTAKDLGF-IWSEPFILEPGETAASDRL-QLFCDR 222
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWVL 374
+ + Y E RN D ++ SP L G+I R +++ E+ + R A D
Sbjct: 223 AIYE-YDEGRN-FPAIDGTSLLSPALRFGAIGIRTLWQKTQEIMALTRSDEARDHIQTWQ 280
Query: 375 FELMWRDYFRFISLKYGNSLFHL-----GGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
E+ WR++ Y +L+H G R+ + WS +Q+ F++W G TGYP++
Sbjct: 281 QEIAWREF-------YQQALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIV 333
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D SN G W + +
Sbjct: 334 DAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSS 393
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G DP+ R F+ QAQ YD E EY+ WLP+L+ L
Sbjct: 394 SSGMDPKPLRIFNPASQAQKYDPEAEYIRQWLPELRNL 431
>gi|344211748|ref|YP_004796068.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
gi|343783103|gb|AEM57080.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
Length = 465
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/447 (26%), Positives = 209/447 (46%), Gaps = 45/447 (10%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
W R DLR DN A L A S+ V+PV+ D H G P R F+++ L
Sbjct: 5 WHRRDLRATDN-AGLAAATPSDPVVPVFVFD---RDVLDHAGPP-----RVAFMLDALDS 55
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LR+ +RG +L++ G P ++P LA +GA V K+ + VR+ L
Sbjct: 56 LREWYRDRGSDLVVAEGDPTAVLPDLAAEYGAEKVTWGKDYSGLARERDAAVRQALDDAD 115
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
++ ++ + H ++ TT D P+ V+T+F + +
Sbjct: 116 VAREAVQNAVLHEPGEI---TTN---DGDPYS------VFTYFGRKWHDREKA------- 156
Query: 266 SSFGPPPSV----VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ + PPP+ VD ++P + L P+ G A ++++ +
Sbjct: 157 TPYEPPPADELADVDGDALPTLADLGFDEPEADVP---AAGTDEARALLDDFLAEN---- 209
Query: 322 VYK-ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND---STYWVLFEL 377
VY+ E R + + +++ S L G+I R +Y+ + +E D S +L
Sbjct: 210 VYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRTED-AKEGTGGDRRESVREFQSQL 268
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
WR+++ + + + + + +W D++L ++W+DG TGYP++DA M++L
Sbjct: 269 AWREFYTQVLFAHPHVVSSNYKSYENPIEWENDEELLQAWKDGETGYPIVDAGMRQLREE 328
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED- 496
+M NR R I SFL +D+ IDWR G EWF L+D+D ++ G W + A G D +
Sbjct: 329 AYMHNRVRMIVASFLTKDLLIDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYF 388
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLK 523
R F+ Q ++YD + EY+ ++P+L+
Sbjct: 389 RIFNPMTQGEDYDPDAEYIKEYVPELR 415
>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
Length = 484
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 133/452 (29%), Positives = 203/452 (44%), Gaps = 41/452 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++WFR DLR+ DN AL A V+ VY +D + G +G +L L
Sbjct: 15 LLWFRRDLRLADNPALTAAVRRGRPVVAVYILDDEDA------GDWASGGASRWWLHHSL 68
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L ++L RG L++R G ++ L GA AVY + C E R + ++
Sbjct: 69 ERLAESLRGRGSRLILRRGAAAAVLDRLISETGAEAVYWNR--CYEPWATAR--DQAIKA 124
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI- 262
+ +S N L+ W +I V+T F K++ A +
Sbjct: 125 SLRLRGHEVRSFNASLLREPW--------EIASKVGGPYRVFTPFWKALRAMGDPGDLLP 176
Query: 263 ---RIPS-SFGPPPSVVD-WGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
RIP+ P +D W P P + G+R + GE+AA R+ +
Sbjct: 177 TPDRIPTLEVAPASDDIDAWALTP-------SKPDWAFGLRAAWKPGEAAARQRLEAFL- 228
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
Y + RN G + +++ SP L G I PR I+ S+ +A D L
Sbjct: 229 -DGAAPEYAKRRN-FPGTNGTSRLSPHLHFGEIGPRQIWH-AASFHHTGMATDQ---FLS 282
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
E+ WR++ + + P +++WS D +WR G TGYP++DA M+EL
Sbjct: 283 EIAWREFSHHLLFHFPMLPTTPLRPEFADFQWSDDPGALAAWRHGMTGYPIVDAGMRELW 342
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R I SFLV+D+ + W++GA WF L+D D SN +W + AG G+D
Sbjct: 343 ATGWMHNRVRMIVASFLVKDLLLPWQVGARWFWDTLVDADLASNSASWQWVAGCGSDAAP 402
Query: 496 -DRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q +D +G YV W+P++ LP
Sbjct: 403 FFRVFNPSLQGAKFDPQGTYVRRWVPEIAGLP 434
>gi|300715863|ref|YP_003740666.1| deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661]
gi|299061699|emb|CAX58815.1| Deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661]
Length = 475
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 130/467 (27%), Positives = 216/467 (46%), Gaps = 51/467 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++W RNDLRV DN AL A D+ VL ++ P +Q H PK A F+ +
Sbjct: 5 LIWLRNDLRVHDNYALHAACRDADATVLALFIATP--AQWKSHSMAPKQAA----FIYQN 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L D++ +L +G+ L E + + ++ + E +
Sbjct: 59 LLDVQHSLAEKGIALHTVQCDDFAASVEALSDFCQQHHVDRLFYNYQYEVNERQRDAAAE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ L + + SQ D S P ++ G + PF + + ++ + + A
Sbjct: 119 RRLFDLDIISQGFDDSLLLPPGSVLTGNREMYKVFTPFSRAFVKRLHEGLPECVPAPKPR 178
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
+G P S P D+ + +L F GE AAL ++ + +
Sbjct: 179 QGA---PLSKTPEIKPFDYPTEAFDSEL------------FAAGEKAALHQLRHFC--QQ 221
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV-LFEL 377
+ Y +TRN + D +++ S +LA+G +SPR + + E R +DS +V L EL
Sbjct: 222 PVTEYPDTRN-IPAVDGTSRLSVYLATGVLSPRQCLHRLLA-EHPRGLDDSNVFVWLNEL 279
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYK----------WSQDQKLFESWRDGCTGYPLI 427
+WR+++R + + + P+ YK W K E+W+ G TGYP++
Sbjct: 280 IWREFYRHLLVAW---------PKLCRYKPFIAWTDNVKWQPADKQLEAWQQGKTGYPIV 330
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++++ G+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 331 DAAMRQMNQLGWMHNRLRMIVASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 390
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
GND R F+ Q + +D+EGE++ WLP+LK +P + + P
Sbjct: 391 SSGNDAAPYFRIFNPTTQGERFDKEGEFIRKWLPELKDVPVKHIHQP 437
>gi|403508998|ref|YP_006640636.1| FAD binding domain of DNA photolyase family protein [Nocardiopsis
alba ATCC BAA-2165]
gi|402802793|gb|AFR10203.1| FAD binding domain of DNA photolyase family protein [Nocardiopsis
alba ATCC BAA-2165]
Length = 437
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 136/450 (30%), Positives = 207/450 (46%), Gaps = 39/450 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+V F DLR+ D+ AL A + SE V+P++ ++P + R +L E L
Sbjct: 6 LVLFTQDLRLHDHPALTAALEESETVVPLFVLEPGL--------LRRAARNRRAYLTEAL 57
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
ADLR L + G +L++R G + LA+ GA AV+ E +R +
Sbjct: 58 ADLRSGLRDLGGDLVLRRGDTTTEVRVLARETGARAVHLGGGVSRFAARREAALRATDLE 117
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V + HP G T+ I V+T + ++ EA+ R IR
Sbjct: 118 VRV----------HP------GPTIVPPGAITPAKGDHYKVFTPYWRAWEAEE--RRKIR 159
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVY 323
+ PP +D G +P ++ E R GG + A R+ W L Y
Sbjct: 160 TAPARVRPPEGIDPGPLPDLDA-EPGGIGALAPERTRGGPTRARERLRR--WIDRGLADY 216
Query: 324 KETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYF 383
+ +++ G ++ S L G +SP EV++ R+ + Y + +L WRD+
Sbjct: 217 PDRHDDLPG-AATSHLSADLRFGCLSPL----EVEAAARD-LPGGPEY--VRQLAWRDFH 268
Query: 384 RFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNR 443
++ + PR E W D + E+W++G TG P++DA M++L GFM NR
Sbjct: 269 HQVTAAFPEIATRDYRPRDRE--WRHDPEALEAWKEGRTGVPIVDAGMRQLLAEGFMHNR 326
Query: 444 GRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPK 503
R I +FL R + + WR GA F+ L D D YGNW + AG GND R +R F+ +
Sbjct: 327 TRMITAAFLTRTLRVHWREGAAHFDAHLTDGDVADEYGNWQWVAGTGNDTRPNRAFNPLR 386
Query: 504 QAQNYDREGEYVAYWLPQLKALPKERRNFP 533
QA+ +D EGEYV LP+L LP R + P
Sbjct: 387 QARRFDPEGEYVRRHLPELAGLPGRRAHTP 416
>gi|297539339|ref|YP_003675108.1| Deoxyribodipyrimidine photo-lyase [Methylotenera versatilis 301]
gi|297258686|gb|ADI30531.1| Deoxyribodipyrimidine photo-lyase [Methylotenera versatilis 301]
Length = 479
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/457 (28%), Positives = 221/457 (48%), Gaps = 36/457 (7%)
Query: 72 SKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT 131
S+A +++ ++VWFR DLR D+ AL A SS+ V V+ D T
Sbjct: 2 SQAQQKSTYEKSLVWFRRDLRDYDHAALYHALKSSKKVYCVFVFD-----TAILNQLNDK 56
Query: 132 GALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEEL 191
R +F+ E + +L+ +L G +L++ HG + IP LA + +AV+ + +
Sbjct: 57 ADRRVEFIWESVRELKTSLQKHGSDLIVLHGNAGDEIPKLANTLLVNAVFTNHDYEPSAI 116
Query: 192 NVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
+ V + L + ++ + +++ + + P+ + L V F K+
Sbjct: 117 TRDAHVAEQLNKSSIAFHHYKDHVIFEKDEVLNLSGKPYCVFTPYKNMWLKTVNDFFFKA 176
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
+ + +S P S+ D G + L S ++ GM+ GG L N
Sbjct: 177 YPVDNHLNNLAKTNAS--PFISLEDLG----FKHTNLASMRLPTGMQ--GG----LTLFN 224
Query: 312 EYFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
++ + + YK+ R+ + G Y S L G+IS R++ E + AN
Sbjct: 225 DFI---ERMSRYKDARDFPAIKGVSY---LSVHLRFGTISIRHLAREAM-----QSANTG 273
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPL 426
L EL+WRD++ + + + N G K+E+ K+ D LF++W DG TGYPL
Sbjct: 274 AQTWLSELIWRDFY--VQILHHNPSVAAGRAYKVEFESLKFPNDTALFQAWCDGKTGYPL 331
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ TGFM NR R +A SFLV+D+ IDWR G +F L+D+D +N G W +
Sbjct: 332 VDAAMRQLNTTGFMHNRLRMVAASFLVKDLLIDWRWGERYFAEKLIDFDLSANNGGWQWA 391
Query: 487 AGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQL 522
A G D + R F+ Q++ +D +G+++ ++P+L
Sbjct: 392 ASTGCDAQPWFRIFNPITQSERFDAQGKFIRKYVPEL 428
>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|448281497|ref|ZP_21472802.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|445578544|gb|ELY32948.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
Length = 468
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/451 (27%), Positives = 201/451 (44%), Gaps = 34/451 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V + W R DLR DN +L A ++ V+P + DP F P R F++E
Sbjct: 3 VHVHWHRRDLRATDNHSLSAAAETGS-VIPAFIFDP----AVLEFASPP----RVAFMLE 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L++LR RG +L++ G P E +P +A+ GA V ++ + VR+ L
Sbjct: 54 SLSELRAWYRERGGDLVVATGDPREELPRIAREHGAERVSWNRDYSGLASKRDEEVREAL 113
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + S D + ++ I VY++F K +
Sbjct: 114 TDAGIEATSVDDAL------------LFEPGSITTQQGETYAVYSYFWKKWRDR-EKESP 160
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ P G + V S+P E L P+ + G AA R+ + D +
Sbjct: 161 VSAPD--GEQLASVSGDSLPSQEALGFDDPEATIPD---AGMEAARRRLETFC--ADPIY 213
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV---KSYERERVANDSTYWVLFELM 378
Y + R++ D ++ SP L G+I R +YE + KS + A DS +L
Sbjct: 214 RYADQRDDPAA-DATSGLSPHLKWGTIGIRTVYEALDRAKSEAPDEAAADSCEEFESQLA 272
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR ++ + +++ + +W D ++W+DG TGYP++DA M++L
Sbjct: 273 WRAFYAHVLDTNPHTVTANYRSYENPIQWQTDAAALQAWKDGKTGYPIVDAGMRQLRAEA 332
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
FM NR R I SFL +D+ +DWR G WF L D+D S+ G W + +G G D + R
Sbjct: 333 FMHNRLRMIVASFLTKDLMLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFR 392
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
F+ Q + +D + EY+ ++P+L +P E
Sbjct: 393 IFNPMTQGERHDPDAEYIRTYVPELADVPAE 423
>gi|209884870|ref|YP_002288727.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
gi|337741487|ref|YP_004633215.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM5]
gi|386030503|ref|YP_005951278.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM4]
gi|209873066|gb|ACI92862.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
gi|336095571|gb|AEI03397.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM4]
gi|336099151|gb|AEI06974.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM5]
Length = 487
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 208/449 (46%), Gaps = 28/449 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFRNDLR+ D+ AL A + ++ ++ +D +Q+ GA +L L
Sbjct: 12 IVWFRNDLRLSDHAALAAAAGTGAPLICLFILDEAAAQSARR----PLGAAAKWWLANSL 67
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L + L RG L++R G I+ +A+ A AV+ E R V L +
Sbjct: 68 RTLDRELRKRGQRLILRRGDTATILVQIAQEAKAKAVFWLDSEIPAEAACARQVITALHE 127
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + + + +S +I + L V+T F K + A
Sbjct: 128 IGVETHIS-RSDLLASPSMIRNKEGHGL-----------RVFTPFWKRVRALGDPPPP-- 173
Query: 264 IPSSFGPPPSVVDWGSVPLIE-QLELHSPKVSKGM--RFVGGESAALGRVNEYFWKKDLL 320
+P+ PPSV S + + QLE P + G+ R+ GE+ A +++ + D +
Sbjct: 174 LPAMKKLPPSVASVESESIEDWQLEPLHPDWAGGLRARWKPGEAGARKKLDAFL--DDAI 231
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK--SYERERVANDSTYWVLFELM 378
Y R++ L D ++ S L G ISPR ++ + + +++D L EL
Sbjct: 232 DGYASGRDD-LARDQTSHLSAHLRFGEISPRQVFHATRFAAAHNPALSHDVEK-FLSELG 289
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++ R + + P + W D+ +W+ G TGYP++DA M+EL TG
Sbjct: 290 WREFCRHLLFDQPDLHRQDLQPSFDNFPWRTDRAALSAWQQGRTGYPIVDAGMRELWHTG 349
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
M NR R +A SFLV+ + IDWR G WF L+D DP SN GNW + AG G D R
Sbjct: 350 TMHNRVRMVAASFLVKHLLIDWREGERWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFR 409
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALP 526
F+ Q + +D +G YV W+P+L LP
Sbjct: 410 IFNPVLQGEKFDPDGAYVMKWVPELAKLP 438
>gi|440229885|ref|YP_007343678.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
gi|440051590|gb|AGB81493.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
Length = 476
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/475 (26%), Positives = 219/475 (46%), Gaps = 41/475 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN+AL A D V+ ++ P+ Q H P+ A F+
Sbjct: 5 LVWLRNDLRITDNKALYAACRDPQAQVVALFIATPQ--QWRRHEMAPRQAA----FIYAN 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L LR L RG+ L+++ + ++ G A++ ++ E +R V
Sbjct: 59 LLQLRSQLAQRGIPLVVQQCDDFAAAARWLTDYCRATGVDALFYNRQYELNERRRDRQVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
L + + +D P MY V+T FRK+ +
Sbjct: 119 SALAETLTCHAFDDALLLPPGSVQTGSGEMYQ-------------VFTPFRKAF-----L 160
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHS-PKVSKGMRFVGGESAALGRVNEYFWKK 317
+ + + P PSV G++ E + P F GE AL R+ + +
Sbjct: 161 QRLLSVDVHSLPAPSVRAGGAIAEPAAPEPFAYPDAEWDAAFPPGEEHALRRLRAFC--R 218
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST--YWVLF 375
+ ++ Y++ R+ D ++ SP+LA G +SPR + ++ + + + + L
Sbjct: 219 EQVEDYRQQRD-FPALDATSGLSPYLALGVLSPRQCFNRLRLTCPDLLTQPESGAFTWLN 277
Query: 376 ELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + + + H +G + +W+ D + ++W+ G TGYP++DA M+
Sbjct: 278 ELIWREFYRHLLVAHPALCRHRPFIGWTDAV--RWNPDAEALQAWQQGRTGYPIVDAAMR 335
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F LLD D +N G W + A G D
Sbjct: 336 QLNHTGWMHNRLRMIVASFLVKDLLIDWRAGERYFMRQLLDGDFAANNGGWQWAASTGTD 395
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKH 546
R F+ Q + +D +G ++ WLP+L +P + P +Q V+L +
Sbjct: 396 AAPYFRIFNPTTQGERFDPQGAFIRKWLPELADVPDNELHHPHRWAEQQGVALAY 450
>gi|374329028|ref|YP_005079212.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
gi|359341816|gb|AEV35190.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
Length = 471
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 144/470 (30%), Positives = 220/470 (46%), Gaps = 76/470 (16%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ I WFR DLR+ DN AL A D E V+P+Y ++ + +G K G +L
Sbjct: 5 IVIHWFRQDLRLSDNPALSAACDVGE-VIPLYILNDKE------YGARKLGGATKNWLHY 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRK 199
L L ++L + LLI G P II SL + GA V+ + C E VE ++
Sbjct: 58 SLKALNESLKGQ---LLIMRGDPAVIINSLIQETGAAGVFWNR--CYEPWRVEHDAQLKT 112
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+L++ ++++S + S L+W + D P+ V+T F +
Sbjct: 113 DLEENGIAAKSFNGS-------LLWEPWQVGKRDGSPYK------VFTPFYR-------- 151
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGM-------------------RF 299
+GC++ P +P+ +QL +HS + +
Sbjct: 152 KGCLQAQEPRKP---------LPVPDQLRIHSFSAEGALAIDELNLLEDRPWSAQVSSHW 202
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
GE AA R +F +D L YK+ RN ++++ SP L G ISP I+ + S
Sbjct: 203 EHGEKAAQNRFYAFF--EDGLSDYKDGRN-FPALTHTSRLSPHLHFGEISPNQIWWALGS 259
Query: 360 YERERVANDSTYWVLFELMWRDYFRFISLKYGN-SLFHLGGPRKLE-YKWSQDQKLFESW 417
+E R + EL WR++ SL + N SL K + + W D + +W
Sbjct: 260 HEETRDIDHFRS----ELGWREFS--YSLLFNNPSLPKSNLNEKFDNFPWLSDDQRLSAW 313
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
+ G TG P++DA M+EL TG+M NR R I SFLV+++ +DWR+G EWF CL+D D
Sbjct: 314 QKGQTGIPIVDAGMRELWQTGYMHNRLRMIVGSFLVKNLLLDWRLGEEWFWDCLVDADLA 373
Query: 478 SNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+N +W + AG G D R F+ Q + +D GEY +LP+LK LP
Sbjct: 374 NNSASWQWIAGCGADAAPYFRIFNPILQGEKFDAHGEYTRRFLPELKDLP 423
>gi|417139698|ref|ZP_11983120.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0259]
gi|417307171|ref|ZP_12094045.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli PCN033]
gi|338771226|gb|EGP25972.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli PCN033]
gi|386157426|gb|EIH13768.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0259]
Length = 472
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 135/459 (29%), Positives = 221/459 (48%), Gaps = 52/459 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAKLINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L LR L +G+ LL R EII + A++ H Y + +E ++ VE
Sbjct: 59 LNGLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R VL +D P + MY + PF ++ L R+ +
Sbjct: 119 RTLRN-----VLCEGFDDSVILPPGAVMTGNHEMYKVF-TPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKL-----EYKWSQDQKLFESWRDGCTGYPLID 428
L EL+WR+++R + Y + H R +W ++ F++W++G TGYP++D
Sbjct: 273 LNELIWREFYRHLMTYYPSLCKH----RPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVD 328
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 329 AAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS 388
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 389 TGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVP 427
>gi|387606186|ref|YP_006095042.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
gi|284920486|emb|CBG33548.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
Length = 472
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 135/459 (29%), Positives = 221/459 (48%), Gaps = 52/459 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAKLINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L LR L +G+ LL R EII + A++ H Y + +E ++ VE
Sbjct: 59 LNGLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R VL +D P + MY + PF ++ L R+ +
Sbjct: 119 RTLRN-----VLCEGFDDSVILPPGAVMTGNHEMYKVF-TPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKL-----EYKWSQDQKLFESWRDGCTGYPLID 428
L EL+WR+++R + Y + H R +W ++ F++W++G TGYP++D
Sbjct: 273 LNELIWREFYRHLMTYYPSLCKH----RPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVD 328
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 329 AAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS 388
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 389 TGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVP 427
>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
Length = 475
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 213/448 (47%), Gaps = 31/448 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVW R D R++DN AL A MV+PVY D + G+ +L L
Sbjct: 6 IVWIRKDFRLVDNPALFHA-AKEGMVVPVYIHDDYEESSM--------GSASKWWLHHAL 56
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
D + ++ L+++ G P++++ L A +Y + L + K LQ
Sbjct: 57 NDFKNSIEKIQGTLIVQKGNPKDVLQKLLHQTNAQDIYWNRRYEPHVLKRD----KELQA 112
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
Q N ++ L W T + D P+ V+T + K+ + K +V ++
Sbjct: 113 FFSEQQINIRTFEGFLLHEPWKITKENGD--PYK------VFTAYYKASQ-KHSVSSAVK 163
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVY 323
+S V+ SV ++ L + + E A+ V + F K LL +
Sbjct: 164 KVTSIQASSKPVESLSVSDLDLLPSIPWDETIKSTWEATEKGAID-VFKTFLKNKLL--H 220
Query: 324 KETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS----TYWVLFELMW 379
E + ++ SP+ A+G +S R +Y +++ + E+V++D+ + +L+W
Sbjct: 221 YEKGRDFPAEALNSFLSPYFATGQLSARVLYHYLRT-KAEKVSSDAFEQQAEMFIRQLIW 279
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RD+ + + ++ + +++W+ + ++W++G TGYPL+DA M+EL TGF
Sbjct: 280 RDFAYQLLYHFPHTTTEPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGF 339
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RY 498
M NR R IA SFLV+ + I W+ GA WF L+D D +N W + AG G D R
Sbjct: 340 MHNRVRMIAASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRI 399
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALP 526
F+ Q++ +D+EGEY+ WLP+LK +P
Sbjct: 400 FNPITQSEKFDKEGEYIKKWLPELKHIP 427
>gi|443316924|ref|ZP_21046350.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
gi|442783454|gb|ELR93368.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
Length = 478
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/456 (28%), Positives = 209/456 (45%), Gaps = 40/456 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A S V V+C+DP +R +L+ CL
Sbjct: 6 LFWHRRDLRLHDNLGLAAARARSPQVTGVFCLDPGILHRD------DVAPVRVAYLMNCL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L+ G LLI G P +++P+LA+ A+Y + +VE R
Sbjct: 60 AALQGRYAAAGGELLILQGSPAQVLPNLAQVIAVTALYWNR-------DVEPYARDRDTH 112
Query: 204 VVLSSQSND---KSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
V + + K+T QL G + P+ VY F ++ +
Sbjct: 113 VAAACKEQGIEIKTTFWDQLLCAPGAVLTGTGS-PYT------VYGPFWRNWCTQAKAPP 165
Query: 261 CIRIPSSF-GPPPSVVD----WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+ P++F G P+ + G++PL +L + + GE AAL ++ +
Sbjct: 166 ELE-PTNFEGLSPAERERANAAGAMPLPSTTDLGF-SWDQPLPVEPGEGAALQQLEAFCS 223
Query: 316 KKDLLKVYKETRNE--MLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
+ + Y E RN LG +++ S L G I R ++ + ER +D T
Sbjct: 224 QDQAIGAYDEQRNFPFALG---TSRLSAALKFGVIGIRTVWA-AAAEAMERCRSDETRQS 279
Query: 374 LF----ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
+ EL WR++++ + + P+ + W D+ F++W G TGYP++DA
Sbjct: 280 VTTWQQELAWREFYQHVMYFFPQLATGPYRPQWQNFPWVNDEAQFQAWCAGRTGYPIVDA 339
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ TG+M NR R I SFL +D+ IDWR G ++F L+D D +N G W + A
Sbjct: 340 AMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQTLVDGDLSANNGGWQWSASS 399
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G DP+ R F+ QA+ +D E EY+ WLP+++ L
Sbjct: 400 GMDPKPLRIFNPASQAKKFDPEAEYIRQWLPEIRHL 435
>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG-6]
gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
Length = 459
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 135/464 (29%), Positives = 205/464 (44%), Gaps = 60/464 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
I WFR DLR+ DN AL A +S VLPVY +DP T G + A R+ FLI
Sbjct: 3 IHWFRRDLRLSDNPALSAAALASGGHVLPVYILDP-----TLLNGLWASPA-RSAFLIAG 56
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L L + GL L++RHG+P + L GA AV ++ ++ + L
Sbjct: 57 LRALDAQLQHHGLRLIVRHGEPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAIEAALH 116
Query: 203 QVVLSSQ-SNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE-------- 253
+ Q ++D + P L T Y VYT + +
Sbjct: 117 AAGCAVQHTHDVAICPPDQILTKNATPY-------------SVYTPYARQWRTWLAHADL 163
Query: 254 ---AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRV 310
A ++ C +P S P +L +P GE AA +
Sbjct: 164 RPVAAPILQPCRDLPVSHAIP---------------DLLAPHPLPP----AGELAAQTIL 204
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
+E+ + L+ Y R+ P +++ SP+L G I+ R +++ +
Sbjct: 205 DEF--TRTSLRTYATQRDLPAVPG-TSRLSPYLRFGMIAVRQCLAVAQAHP----GPGAD 257
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
W+ EL WRD++ + + + L P+ + W D LF +W G TGYP++DA
Sbjct: 258 TWIA-ELAWRDFYIQVLFHHPHVLRGAFKPQYDDLAWENDPDLFAAWCAGHTGYPMVDAA 316
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L G+M NR R I SFL +D+ IDWR G +F LLD DP +N G W + A G
Sbjct: 317 MRQLQQEGWMHNRARMIVASFLTKDLLIDWRWGERYFMQMLLDGDPAANNGGWQWAASTG 376
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D + R F+ Q Q +D G+Y+ +LP+L +P + + P
Sbjct: 377 TDAQPYFRIFNPTCQGQKFDPHGDYIRRYLPELAGVPNHKIHTP 420
>gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
Length = 487
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 141/471 (29%), Positives = 222/471 (47%), Gaps = 53/471 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
AIVWFR+DLR+ DN AL +A +S + VY ++ ++ P GA R +L
Sbjct: 9 AAIVWFRDDLRLTDNPALARAAESGRPFVCVYVLEREGTR-------PLGGAAR-WWLDG 60
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L +L G LL+ G E I +LA+ A AVY + + ++++L
Sbjct: 61 ALRSLDASLAGHGGRLLVLEGDERETIAALAEELDAGAVYWNRRYDGIARETDGALKRSL 120
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ + ++S N L+ W ++ V+T + ++ V
Sbjct: 121 KEAGIEAES----FNGALLREPW--------ELQTGSGGAFQVFTAYWRAALKSGDVSAP 168
Query: 262 IRIPSS--FGPPPSVVDWGSVPLIEQLEL--HSPKVSKGMR--FVGGESAALGRVNEYFW 315
+ PS+ F P+ + ++ I+ L L P + G+R +V E AAL + +
Sbjct: 169 LAEPSTWRFHTLPASLARRALK-IDALGLLPTRPDWAGGLREAWVPTEEAALELLERFLD 227
Query: 316 KKDLLKVYKETRNEMLGPD--YSTKFSPWLASGSISPRYIYEEVKSYERE---RVANDST 370
KK ++ Y E R+ PD +++ SP+L G +S R ++ + RE VA D
Sbjct: 228 KK--IRGYGEARDR---PDRPATSRLSPYLRFGQLSARQVWHAAMAAAREGGAAVAADIE 282
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK-------WSQDQKLFESWRDGCTG 423
+V EL WR++ + L+H Y+ W D+ F +W G TG
Sbjct: 283 KFV-SELGWREFDTSL-------LYHFPELPTRNYRERFDAMPWRDDEAGFTAWCRGRTG 334
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YPL+DA M+EL TG+M NR R + SFL++ + IDWR G WF L+D D +N NW
Sbjct: 335 YPLVDAGMRELWTTGWMHNRVRMVVASFLIKHLLIDWRAGERWFWDTLVDADIANNSANW 394
Query: 484 TYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+ AG G D R F+ Q + +D EG+YV W+P+L LP + + P
Sbjct: 395 QWVAGCGADAAPYFRIFNPVTQGRKFDPEGDYVRRWVPELARLPADAIHEP 445
>gi|420239237|ref|ZP_14743574.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
gi|398081725|gb|EJL72497.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
Length = 477
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/454 (28%), Positives = 210/454 (46%), Gaps = 39/454 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AI+WFR DLR+ DN AL A ++ V+PVY +P H GA +A +L
Sbjct: 9 AILWFRKDLRLDDNPALHAAIEAGGPVIPVYIREP------AHLNIGPLGAAQAWWLHHS 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA L+ +L + +L+ GK E+++ L + A V+ + E +R + L+
Sbjct: 63 LAALKASLKSLSGDLIFISGKAEDVLTDLVRKTNAKTVFVNR--AYERTLFDRGIAIELK 120
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ ++ ++ G ++ I + V+T F +++ +
Sbjct: 121 KHDIA------------IRAFHGQLLHEPKSIRTGAGNAFKVFTPFWNALQKVGEPQEPT 168
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHS--PK-----VSKGMRFVGGESAALGRVNEYFW 315
P+ P PL E L+ + PK G + GE+ A ++ +
Sbjct: 169 DAPTKIPSP------EHFPLSENLDHWALLPKKPDWAADFGRMWTPGEAGAQEKLADVV- 221
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+DL + YK R+ + ++ SP LA G +SP I+ V+ + A++
Sbjct: 222 DRDL-QDYKRGRD-LPSVHATSLLSPHLAHGEVSPARIWHAVRGLPPK--ASEDVAHFRR 277
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL WRD+ + ++ R +KW D K F +W G TGYP++DA M++L
Sbjct: 278 ELAWRDFCYNLLAEFPKLHDRNWDDRFDGFKWEYDAKEFSAWTMGLTGYPIVDAGMRQLW 337
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TGFM NR R I SFL++D+ IDWR G WF L+D DP +N NW + AG G D
Sbjct: 338 RTGFMHNRVRMITASFLIKDLMIDWRRGERWFRDTLVDADPANNSANWQWVAGSGADASP 397
Query: 496 -DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q + +D +G+YV +P+L L ++
Sbjct: 398 FFRIFNPVLQGEKFDPDGDYVREHVPELARLDRK 431
>gi|365087758|ref|ZP_09327644.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. NO-1]
gi|363417381|gb|EHL24461.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. NO-1]
Length = 496
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 134/463 (28%), Positives = 214/463 (46%), Gaps = 39/463 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR DLR D AL A E V + D P+ R +F+ E L
Sbjct: 15 LVWFRRDLRAHDQAALYHALTRCEQVFCAFVFD-----KDILDALPRADR-RVEFIRESL 68
Query: 144 ADLRKNL-----MNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
+L + L RG L++ H + IP+LA + AV+A + + L+ +RLVR
Sbjct: 69 VELDETLRALSGQERG-GLIVWHAVASDAIPALASALDVQAVFANHDDEPQALDRDRLVR 127
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
L + + T + +++ T + P+ ++ L + +S +
Sbjct: 128 TRLAAAGKAFHTFKDHTLLERSEVLTQTGNPYSVFTPYKNAWLKKIDAFQLQSYPVERHA 187
Query: 259 RGCIRIPSSFGPP-PSVVDWGSVPL-IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
P + P P++ D G P + QL L P ++G + + + LGRV Y
Sbjct: 188 HHLAARPEGYCQPVPTLQDLGFEPTALSQLRL--PTGARGAQQLFDDF--LGRVERY--- 240
Query: 317 KDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
++TRN + GP Y S L G+ISPR + +E +T+ L
Sbjct: 241 -------EDTRNFPAVKGPSY---LSVHLRFGTISPRLLARTAHRLMQEGNPGATTW--L 288
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWS---QDQKLFESWRDGCTGYPLIDANM 431
EL+WRD++ I + + + P W + LF +W +G TGYPL+DA M
Sbjct: 289 SELIWRDFYFQILHHHPHVVGQSFKPAYDAIAWETGPEADALFAAWCEGRTGYPLVDAAM 348
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+++ TG+M NR R + SFLV+D+GIDWR G +F T L D+D +N G W + + G
Sbjct: 349 AQINQTGYMHNRLRMVVASFLVKDLGIDWRRGEAYFATHLNDFDLAANNGGWQWASSSGC 408
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D + R F+ Q++ +D EG+++ +LPQL L + + P
Sbjct: 409 DAQPYFRIFNPVSQSEKFDPEGKFIRRYLPQLAGLSAKALHAP 451
>gi|421879677|ref|ZP_16311138.1| PhrB protein [Leuconostoc citreum LBAE C11]
gi|390446444|emb|CCF27258.1| PhrB protein [Leuconostoc citreum LBAE C11]
Length = 478
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 134/469 (28%), Positives = 212/469 (45%), Gaps = 56/469 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V+IVW R D R+ DN AL A ++S+ VL V+ VDP +TT +L
Sbjct: 4 VSIVWIRRDFRIQDNLALAAATENSDSVLLVFIVDPEQIETT--------ASLNQSAFFA 55
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELN-VER-LVRK 199
+ NL N ++LL+ G PE L + E N VER R+
Sbjct: 56 SAKAFQANLANENIHLLVLKGTPESQFEKLTAAL--------PEISDLYFNFVERGYGRQ 107
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
QQV Q+ H + ++ ++I + ++T + K
Sbjct: 108 RDQQVAHHCQTTLGLKTHAYIDY----NLHSANEIKKADGAGYQIFTPYFKR-------- 155
Query: 260 GCIRIPSSFGPPPSVVDWGSVPL-----IEQLELHSPKVSKGM-------RFVG--GESA 305
I +P P P V S+ IE L LH + + + VG GE+
Sbjct: 156 -WITLPK---PKPVKVSVTSLQEKQMANIEPLHLHQEGLLTSLINEKHDKQLVGQVGEAK 211
Query: 306 ALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV 365
AL + ++ + L Y +T+ ++ D ++ S +L +G I+ R IY+ V + E E
Sbjct: 212 ALQTLKDFI--QSHLAEY-DTQRDLPFLDATSHLSRYLRTGEIAIRTIYQAVIN-EPESE 267
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYP 425
+ + EL WRDY+ I P + W + F W+ G TG+P
Sbjct: 268 GQQT---FIKELAWRDYYNMIYAMNPQQNTQSLRPEFQKIAWRNNHNDFLLWQTGQTGFP 324
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M++L+ TG+M NR R I SFL +D+ IDWR G ++F LLDYDP SN G W +
Sbjct: 325 IVDAAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQW 384
Query: 486 GAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
A G D R F+ +Q+Q +D +G+++ ++P+L + ++ + P
Sbjct: 385 AASTGTDSVPYFRIFNPTRQSQKFDPDGQFIKQFVPELSQITNDKIHEP 433
>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
gi|118595452|sp|P05327.4|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
Length = 484
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 134/486 (27%), Positives = 209/486 (43%), Gaps = 74/486 (15%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A S ++ ++C+DP+ Q+ R +L CL
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSA------DMAPARVAYLQGCL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L++ G LL+ G P+ +IP LA+ A AVY + ++E R Q
Sbjct: 60 QELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQ-------DIEPYGRDRDGQ 112
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V + ++ +W ++ D I + VY F K+ +A+
Sbjct: 113 VAAALKTAGIRAVQ-----LWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPK------ 161
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKV--------------SKGMRFVGGESAALGR 309
P+ P +VD EQL +P + G GE+AA+ R
Sbjct: 162 -PTPVATPTELVDLSP----EQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIAR 216
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPR---YIYEEVKSYERERVA 366
+ E+ + Y RN ++ SP L G+I R + R A
Sbjct: 217 LQEFC--DRAIADYDPQRN-FPAEAGTSGLSPALKFGAIGIRQAWRAASAAHALSRSDEA 273
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHL----GGP-RKL--EYKWSQDQKLFESWRD 419
+S EL WR++ Y ++L+H GP R L ++ W + LF +W
Sbjct: 274 RNSIRVWQQELAWREF-------YQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQ 326
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
TGYP++DA M++L+ TG+M NR I SFL +D+ IDWR G ++F L+D D +N
Sbjct: 327 AQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAAN 386
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL-----------PKE 528
G W + A G DP+ R F+ QA+ +D Y+ WLP+L+ + P
Sbjct: 387 NGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIG 446
Query: 529 RRNFPG 534
RR +P
Sbjct: 447 RRGYPA 452
>gi|340777154|ref|ZP_08697097.1| Deoxyribodipyrimidine photo-lyase [Acetobacter aceti NBRC 14818]
Length = 477
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 137/467 (29%), Positives = 212/467 (45%), Gaps = 38/467 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AI+WFR D R+ DN AL A VL + ++P Q H + + GA+RA
Sbjct: 6 AILWFREDFRLADNAALSAAARDGAPVLCITILEPEPQQGAAHDWW-RDGAIRA------ 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L + L + GK E+++P+LAK+ A AV+ + ++ ++ L+
Sbjct: 59 ---LDAALQEKDGRLHVLRGKAEDLVPALAKACNASAVHWNRRYDPTGRAIDTAIKTQLK 115
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ S + H T+ D PF V+T F ++ R +
Sbjct: 116 STGTEAYSFPGALLHEPW------TIRTQADKPFQ------VFTPFWRTARKLGDPRPPL 163
Query: 263 RIPSS--FGPPPSVVDWGSV-PLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKK 317
P + F P + S+ P L SP + G R + GE AA + + +
Sbjct: 164 SAPDTLKFASFPKTDQFHSLTPEEFNLLPTSPDWAAGFRETWEPGEKAAHEHLALFV--E 221
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
D L+ Y E R+ + ++ SP+L G ++P ++ V + D L EL
Sbjct: 222 DTLRGYSEERD-YPAAEACSRLSPYLRFGHVTPAQLWHAVMQADASAQNKDK---FLAEL 277
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
WR++ I + N P W D K ++W+ G TGYPL+DA M+EL T
Sbjct: 278 GWREFAWSILFEQANVATRSLRPEFDALPWRTDPKGLKAWQSGRTGYPLVDAGMRELWHT 337
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+M NR R + SFLV+ + IDWR G WF L+D+DP SN NW + AG G D
Sbjct: 338 GWMHNRIRMVVASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAP-- 395
Query: 498 YFSIPK---QAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQI 541
+F I Q++ +D EGEY+ W+P+L+ +P + P + E +
Sbjct: 396 FFRIMNPILQSEKFDAEGEYIRRWVPELQRVPASMIHAPWAADQEAL 442
>gi|123967845|ref|YP_001008703.1| DNA photolyase [Prochlorococcus marinus str. AS9601]
gi|123197955|gb|ABM69596.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601]
Length = 477
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/462 (27%), Positives = 209/462 (45%), Gaps = 50/462 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN+AL+KA+ S + Y D +S + RA FL L
Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSNAITSTYIFDKNYSHDF-------NASSRAWFLGNSL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L N G L++ G P IIP LAK A V+ + E+N + ++KNL++
Sbjct: 60 QELGNNWKKMGSRLVMEEGDPVLIIPKLAKKINAKFVFWNRSIEPYEINRDLQIKKNLKE 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ Q+ W + I +++ VY F K++++K + G
Sbjct: 120 ------------QNIQVIETWDHLLVEPLKIFSGNNNPYSVYGPFYKNLKSKMNLLGLYE 167
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVG--------GESAALGRVNEYFW 315
+ + I + K K ++F G GE+AA + +
Sbjct: 168 QDKVGFQFKDIDNKLKDKTINSSDSVLEKFIKNIKFPGSNICPCKPGENAAETLLENFIN 227
Query: 316 KKDLLKVYKETRNEMLGPDYSTKF-SPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
+K K+Y T F S L G+IS R ++ + + + N Y +
Sbjct: 228 EK---KIYSYNSARDFPSHNGTSFLSASLRFGTISIRKVWNATLNLNSD-LENQGNYLSI 283
Query: 375 ----FELMWRDYFRFISLKYGNSLFHL----GGPRKLE---YKWSQDQKLFESWRDGCTG 423
EL+WR++ Y + LFH GP + + ++W + + F+ W +G TG
Sbjct: 284 ETWQKELVWREF-------YQHCLFHFPELEKGPYRKKWDHFRWQNNNEWFQHWSNGETG 336
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
P++DA M++L+ TG+M NR R I SFLV+D+ +W+MG + F L+D D +N G W
Sbjct: 337 VPIVDAAMRQLNSTGWMHNRCRMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGW 396
Query: 484 TYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ A G DP+ R F+ QA+ +D EY+ YW+P+L +
Sbjct: 397 QWSASSGMDPKPLRIFNPYTQAKKFDPICEYIKYWIPELSKV 438
>gi|357403751|ref|YP_004915675.1| deoxyribodipyrimidine photo-lyase [Methylomicrobium alcaliphilum
20Z]
gi|351716416|emb|CCE22076.1| deoxyribodipyrimidine photo-lyase [Methylomicrobium alcaliphilum
20Z]
Length = 453
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 137/457 (29%), Positives = 200/457 (43%), Gaps = 64/457 (14%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
K + IV R D+R+ DN AL +A SE V + DP Q H P QF+
Sbjct: 6 KSLYIV--RRDMRIDDNTALNEALRLSEQVQACFIFDP--YQIDEH---PYQSRPALQFM 58
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
++ L DLR+ RG L I G+PE+I+ + G AV+ ++ R
Sbjct: 59 LQSLDDLREQFRERGACLTIVRGEPEKIVKDWVLACGIEAVFVNRDYTP----FSRHRDY 114
Query: 200 NLQQVVLS-----SQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
LQQV + D N P+ L ++Y V+T F +
Sbjct: 115 RLQQVCIELDIAWHSCADVLLNEPEQALKSDGSVY-------------KVFTAFYNNAR- 160
Query: 255 KCTVRGCIRIPSS-----FGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGR 309
R + +P + F PP + PL K + G GG AL
Sbjct: 161 ----RIPVGLPQTLAEGRFCVPPECPLYDYEPL---------KTNAGPNLRGGRRQALAI 207
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTK--FSPWLASGSISPRYIYEEVKSYERERVAN 367
D L+ KE +N P ++ S L G++S R + V+ V
Sbjct: 208 F-------DALENLKEYQNRRDYPALASTSLLSAHLKFGTVSIREAFYVVQC-----VLG 255
Query: 368 DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLI 427
D + +L + WRD+F I+ + H + W DQ F +W +G TG+P++
Sbjct: 256 DG-HPLLRQFYWRDFFTHIAYHFPEVFGHAFVRKYDALPWRNDQAQFYAWAEGRTGFPIV 314
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M+EL+ TG+M NR R I SFLV+D+ I WR G +F L+DYDPC N GNW + A
Sbjct: 315 DAGMRELNRTGYMHNRVRMITASFLVKDLHISWRWGERYFAQHLVDYDPCVNNGNWQWAA 374
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLK 523
G D + R F+ Q Q +D + EY+ W+P+L+
Sbjct: 375 STGCDAQPYFRIFNPWLQQQKFDGDCEYIYRWIPELR 411
>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
Length = 474
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 131/458 (28%), Positives = 217/458 (47%), Gaps = 44/458 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A + V+ V+C+DP +R ++I
Sbjct: 4 LILFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAI------LSGDDIAPVRVAYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+++ G LLI P + + LA + GA AVY ++ +R V ++L
Sbjct: 58 CLQCLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVRG 260
+V + +++ W ++ + I F S P VYT + + +
Sbjct: 118 TEVGI------------KVETFWDQVLHSPEAI-FTGSKEPYKVYTPYWRKWIQQPKPEP 164
Query: 261 CIRIPS---SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
C + S + + + G++ L +L S+ GE+AA R+ + F +
Sbjct: 165 CDTLKSRGLTEAQEKAAREAGAIALPTAKDLGF-IWSEPFILEPGETAASDRL-QLFCDR 222
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWVL 374
+ + Y + RN D ++ SP L G+I R +++ E+ + R A D
Sbjct: 223 AIYE-YDQGRN-FPAIDGTSLLSPALRFGAIGIRTLWQKTQEIMALTRSDEARDHIQTWQ 280
Query: 375 FELMWRDYFRFISLKYGNSLFHL-----GGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
E+ WR++ Y +L+H G R+ + WS +Q+ F++W G TGYP++
Sbjct: 281 QEIAWREF-------YQQALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIV 333
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D SN G W + +
Sbjct: 334 DAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSS 393
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G DP+ R F+ QAQ YD E EY+ WLP+L+ L
Sbjct: 394 SSGMDPKPLRIFNPASQAQKYDPEAEYIRQWLPELRNL 431
>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
Length = 475
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 212/448 (47%), Gaps = 31/448 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVW R D R++DN AL A MV+PVY D + G+ +L L
Sbjct: 6 IVWIRKDFRLVDNPALFHA-AKEGMVVPVYIHDDYEESSM--------GSASKWWLHHAL 56
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
D + ++ L+++ G P++++ L A +Y L + K LQ
Sbjct: 57 NDFKTSIKKIEGTLIVQKGNPKDVLQKLLHETNAQDIYWNSRYEPHALKRD----KELQA 112
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
Q N ++ L W T + D P+ V+T + K+ + K +V ++
Sbjct: 113 FFSEQQINIRTFEGFLLHEPWKITKENGD--PYK------VFTAYYKASQ-KHSVSSAVK 163
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVY 323
+S V+ SV ++ L + + E A+ V + F K LL +
Sbjct: 164 KVTSIQASSKPVESLSVSDLDLLPSIPWDETIKSTWEATEKGAID-VFKTFLKNKLL--H 220
Query: 324 KETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS----TYWVLFELMW 379
E + ++ SP+LA+G +S R +Y +++ + E+V +D+ + +L+W
Sbjct: 221 YEKGRDFPAEALNSFLSPYLATGQLSARVLYHYLRT-KAEKVGSDAFEQQAEMFIRQLIW 279
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RD+ + + ++ + +++W+ + ++W++G TGYPL+DA M+EL TGF
Sbjct: 280 RDFAYQLLYHFPHTTTEPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGF 339
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RY 498
M NR R +A SFLV+ + I W+ GA WF L+D D +N W + AG G D R
Sbjct: 340 MHNRVRMVAASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRI 399
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALP 526
F+ Q++ +D+EGEY+ WLP+LK +P
Sbjct: 400 FNPITQSEKFDKEGEYIKKWLPELKDIP 427
>gi|381168517|ref|ZP_09877711.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
gi|380682377|emb|CCG42529.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
Length = 482
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/455 (28%), Positives = 208/455 (45%), Gaps = 28/455 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AIVWFR DLR+ DN AL++A S + ++P++ +T G GA R +L
Sbjct: 5 AIVWFRRDLRLADNPALVEAAASGQPLIPLFI-----DETGVPEGEADGGATR-WWLHHS 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L ++L RG+ LL+R G+P ++ +L + GA V + + + ++ L
Sbjct: 59 LLSLGRDLAARGVPLLLRRGEPLAVLEALVAATGATRVLWNRRYTPRGVVQDTTIKAALT 118
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + +S ++ + PF S L + + +R C
Sbjct: 119 RHGIEVRSFKAGLLFEPWEIATRSGTPFRVFTPFWRSCL--AAPPPDRPLPPPAALRPCE 176
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKKDLL 320
+P P + W +P +P + G+ + GE+ A R+ + ++ L
Sbjct: 177 SVP----PGDDLGSWRLLPT-------APDWAGGLNADWQPGEAGAEARLQIFLDQR--L 223
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K Y R+ + G +++ SP LA G ISPR + + D L EL WR
Sbjct: 224 KAYAVARD-LPGQAGTSRLSPHLAFGEISPRRAFHAARDAAGSGNGLDR---FLAELGWR 279
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
++ + + + W D +L +W+ G TG+PL+DA M+EL TG+M
Sbjct: 280 EFCAHLLFTVPDLPEQPLRGEFAAFPWRDDPELLVAWQRGRTGFPLVDAGMRELWTTGWM 339
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYF 499
NR R + SFLV+D+ + WR+GA+WF L+D D SN +W + AG G D R F
Sbjct: 340 HNRVRMVVASFLVKDLLLSWRLGADWFRDTLVDADLASNVASWQWVAGCGADAAPFFRIF 399
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPG 534
+ Q + +D +G YV W P+L LP + PG
Sbjct: 400 NPTLQGEKFDPDGRYVRRWCPELAGLPDRWLHQPG 434
>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
Length = 489
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 136/459 (29%), Positives = 208/459 (45%), Gaps = 48/459 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR DLR+ DN AL A S V+PV+ +D G+ GA R +L L
Sbjct: 7 LVWFRQDLRLADNPALSDAARSGRPVVPVFVLD-----DDTPGGWRPGGASR-WWLHHSL 60
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L ++L G L++R G+ + I L + GA V + C E ER R L+
Sbjct: 61 ASLSRSLATAGSPLVLRRGRADVAIGELVRETGAGTVLWNR--CYEPWATERDSR--LKA 116
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++ KS N L+ T+ P+ V+T F +++ + +
Sbjct: 117 DLRAAGVEVKSFNGSLLREP--MTVRTAAGEPYR------VFTPFWRAVSSSPDWPEPLA 168
Query: 264 IPSSFGPPPS------VVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
P PP+ + WG +P +P + G+R + GE+A R+ +
Sbjct: 169 APDRLEAPPTAPASDPLESWGLLPT-------TPDWAGGLRQAWQPGEAAVAARLRAFL- 220
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY-------ERERVAND 368
+ Y E R+ G D +++ SP+L G ISPR ++ + E R A
Sbjct: 221 -EGAAADYAEGRDRP-GSDGTSRLSPYLHFGEISPRQVWAATRDAMLSGNPPEHRRHAES 278
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
L EL WR++ + + PR ++ W D +SW+ G TGYP++D
Sbjct: 279 ----FLRELGWREFCYNLLYHFPKLPERPLNPRFEDFPWQPDSAALDSWQRGRTGYPIVD 334
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L TG+M NR R I SFLV+ + + W+ G WF L+D D +N W + AG
Sbjct: 335 AGMRQLWTTGWMHNRVRMIVGSFLVKHLLLPWQEGQRWFWDTLVDADLANNAAGWQWIAG 394
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q +D +G YV W+P+L ALP
Sbjct: 395 CGADAAPYFRVFNPVLQGGKFDPDGRYVRRWVPELAALP 433
>gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
Length = 492
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 127/472 (26%), Positives = 211/472 (44%), Gaps = 57/472 (12%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G +VW R+DLR+ DN AL A +++ ++P+ +D G G +L
Sbjct: 17 GPIVVWLRDDLRLDDNPALALAAETNRPIVPLVVLDEESD------GVRALGGAHKWWLH 70
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVY--------------AQKET 186
L +L +G L +R GK ++ + + + GA A++ A E
Sbjct: 71 HSLESFASSLRGKGSRLTLRRGKAKDQVLDVIEKTGASALFFNRRYDQASRAVDDAIGEA 130
Query: 187 CSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT 246
++++VER +L N ++T+ K+ + P D PD
Sbjct: 131 LGDQVSVERFTAN-----LLHDPENVETTSGGYYKVFTPFWRKVSESGPRDPIDPPD--- 182
Query: 247 HFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGES 304
++ P +F + DW +P P S G+ + GE
Sbjct: 183 --------------GLKQPDTFPQSDDLEDWELLPT-------KPDWSGGIADFWTPGEK 221
Query: 305 AALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY--ER 362
AA R + DLL Y + R D +++ SP+L G ISP ++ ++Y R
Sbjct: 222 AAHDRFETFC--DDLLSDYHKGRERPYADD-TSRMSPYLRWGEISPYRLWHTAQAYANRR 278
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCT 422
+ V +++ L EL+WRD+ + +G R + W +K ++W++G T
Sbjct: 279 KTVPDEAIRTFLQELVWRDFNYHLLFHFGPLADKNFNDRFDNFSWRSSKKDLKAWQNGLT 338
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
GYP++DA M++L TG+M NR R I SFL +D+ IDWR G WF L+D D SN
Sbjct: 339 GYPIVDAGMRQLWKTGWMHNRVRMIVGSFLTKDLLIDWRDGERWFWDTLVDGDIASNTAQ 398
Query: 483 WTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
W + G G D + R F+ Q++ +D+ G Y+ ++P+LK +P + + P
Sbjct: 399 WQWIGGAGADAQPFFRIFNPITQSERFDKNGAYIRQFVPELKEMPDKHIHAP 450
>gi|347760850|ref|YP_004868411.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
gi|347579820|dbj|BAK84041.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
Length = 466
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 133/480 (27%), Positives = 218/480 (45%), Gaps = 43/480 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
+ ++WFR+DLR+ DN AL A + V+ +Y DP + GA +L
Sbjct: 4 RAPTVMWFRDDLRLADNPALTDA-ATQGPVICLYVHDPAFA----------LGAAERWWL 52
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+ L L +L RG L I G + ++ LA+ GA AV + V+ ++
Sbjct: 53 HDALTALDHDLRARGGQLCIMEGSAQAVVQWLAQQAGATAVVWNRRYGGPARQVDTDIKT 112
Query: 200 NLQQVVLSSQSNDKSTNHP--QLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
L+ + + ++S+ + H Q++ GT PF VYT + ++++A
Sbjct: 113 ALKVMGIDARSHPGNMLHEPWQVRTRQGT--------PFR------VYTPWWRAVQAMEA 158
Query: 258 VRGCIRIPSSF---GPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNE 312
+ +P+S PP+V + P +L P ++G+R + GE A R++
Sbjct: 159 PLPPVSVPASLTFASLPPAVGEQQLAPSALRLLPTRPDWAQGLRDTWQPGEQAGQARLDS 218
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
+ K+ + Y R+ P ++ SP+L G +S R ++ V + +E + + +
Sbjct: 219 FVAKR--MAGYARQRDLPARP-ATSALSPYLRFGHVSSRQVWHAVAA-GKEMDEDGACF- 273
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
L E+ WRD+ ++ P W D ++W+ G TGYP++DA M+
Sbjct: 274 -LSEVGWRDFAHATLFEFPEMATRSLRPEYDRMPWRTDPAALQAWQQGRTGYPIVDAGMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TG+M NR R I SFL + + +DWR G WF L+D D SN NW + AG G D
Sbjct: 333 ELWHTGWMHNRVRMIVASFLTKHLLLDWRAGERWFADTLVDADGASNPFNWQWVAGCGLD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGG----SYIEQIVSLKHG 547
R F+ Q + +D G+YV W+P++ L + P Y IV L G
Sbjct: 393 AAPYFRIFNPVLQGEKFDPAGDYVRRWVPEIAHLTGRDLHTPWKMAPRGYPAPIVDLTAG 452
>gi|336315016|ref|ZP_08569929.1| deoxyribodipyrimidine photolyase [Rheinheimera sp. A13L]
gi|335880638|gb|EGM78524.1| deoxyribodipyrimidine photolyase [Rheinheimera sp. A13L]
Length = 477
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 131/469 (27%), Positives = 221/469 (47%), Gaps = 52/469 (11%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
++VW RNDLRV DN+AL +A S V+ ++ P Q HF P ++ F+
Sbjct: 5 AFSLVWLRNDLRVYDNQALFEACQSGLPVVALFVATPDSWQQ--HFMAP----IKQDFIR 58
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF---GAHAVYAQKETCSEELNVERLV 197
+ L+ L + LL G + +P+L + F GA A+Y E E + V
Sbjct: 59 RRVVQLQTELALLNIPLLAVEGSHYDALPALLQQFIDAGAEALYGHNEYELRERLRDNKV 118
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+S D+ P ++ T + ++T F+K+ A+
Sbjct: 119 SATFADAGKTSFWFDRKAVMPPGSILSKT------------GGIYQIFTPFKKTWLARLR 166
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALG----RVNEY 313
G F P ++ D + L P + M+ G SAA G +V E
Sbjct: 167 ETGV----RCFPKPKALAD---------VTLQLPALPT-MQRGDGSSAAYGVEELKVLEQ 212
Query: 314 F--WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISP-----RYIYEEVKSYERERVA 366
+ +D Y +T + D ++ S +LA G +S R E ++RE+
Sbjct: 213 MRQFCRDKAAFY-QTERDFPALDGTSSLSAYLAIGVVSAQQCISRLQLEAASDWDREK-- 269
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYP 425
+ ++ W L EL+WRD++ I + + + + H + + W + +LF++W +G TGYP
Sbjct: 270 SGASVW-LSELVWRDFYHHILMAFPDLIKHKAFQKDTDGIVWPNNPQLFQAWCEGKTGYP 328
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M++L+ TG+M NR R I SFLV+D+ IDWR G ++F + L+D D +N G W +
Sbjct: 329 IVDAAMRQLNQTGWMHNRLRMIVASFLVKDLHIDWRWGEQYFMSKLIDGDFAANNGGWQW 388
Query: 486 GAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
A G D R F+ Q++ +D +G ++ LP+L +PK++ ++P
Sbjct: 389 AASTGTDAAPYFRIFNPVTQSERFDPDGVFIKAMLPELADVPKKQIHWP 437
>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
Length = 467
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 128/458 (27%), Positives = 210/458 (45%), Gaps = 52/458 (11%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G + W R DLR+ DN L + V+ V+ +DP + P R FL+
Sbjct: 2 GPWLFWHRRDLRLADNLGLAAVSAITPEVMGVFVLDPAELE------HPTMAPARRWFLL 55
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
E L +L++ G LL+ G P E++P LA+ GA V + +VE LVR+
Sbjct: 56 ESLRELQQRWRQAGSQLLLLEGNPVELLPRLAQQLGAAGVAWNR-------DVEPLVRQR 108
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+++ + ++ ++ W + + + VY + +S E + +
Sbjct: 109 DRELAAALKAIGV-----RVAADWDQLLVPPEQLKTGGGDPYRVYGPYWRSWEKQPKAKP 163
Query: 261 CIRIPSSFGPPPSVV------DWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
P PS + D +P++ ++ + + + GE+AAL ++ +
Sbjct: 164 V--------PAPSELKALLKPDLSGLPVLNEVPVEPWEGADLCPCRPGETAALEQLEHF- 214
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTY 371
++ Y E RN + G + ++ S L +GS+SPR + +V S+ R S
Sbjct: 215 -AARAMEHYCEGRN-LPGDEGTSTLSAALRAGSLSPRTAWAASLDVWSHCRSDEQRQSVT 272
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHL----GGPRKLEYK---WSQDQKLFESWRDGCTGY 424
EL WR++ Y +LFH GP + +++ W D ++W+DG TG
Sbjct: 273 VWQQELAWREF-------YQQALFHFPELADGPYRPQWRQFPWEDDPVRLKAWQDGLTGV 325
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
P++DA M++L TGFM NR R I SFLV+D+ DWR G +F +D D +N G W
Sbjct: 326 PIVDAAMRQLVQTGFMHNRCRMIVASFLVKDLICDWRHGEAFFMAHEVDGDLAANNGGWQ 385
Query: 485 YGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL 522
+ A G DP+ R F+ QA +D E Y+ WLP+L
Sbjct: 386 WSASSGMDPKPLRIFNPFTQASKFDPEATYIRRWLPEL 423
>gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
Length = 481
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 126/460 (27%), Positives = 216/460 (46%), Gaps = 63/460 (13%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++VWFR DLR D+ AL A SE V+ + D T G P+ R +F+ E
Sbjct: 4 SLVWFRRDLRDYDHAALYHALKDSEQVVCAFVFD-----TDILDGLPRDDR-RVEFIWES 57
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE----------TCSEELN 192
+ +L+ L RG +LL+RHGK E IP+LA G VY ++ T S++L
Sbjct: 58 VRELKLALQERGGDLLVRHGKATEEIPALASVLGVECVYCNRDYEPAAVKRDDTVSQQLG 117
Query: 193 VERLVRKNLQQVVLSSQSNDKSTNHPQLKLIW---GTTMYHLDDIPFDHSSLPDVYTHFR 249
+ + K+ + V+ + + + + + LDD + H
Sbjct: 118 TQGIAFKSFKDQVIFERDEIMTKSGTPFSVFTPYKNACLRKLDDFHLKAYPVDRYIHHLA 177
Query: 250 KSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGR 309
+S P P +P +E L + K +R G S +
Sbjct: 178 QS-----------------APQP-------MPSLESLAFARSNL-KQLRLPTGMSGGMAL 212
Query: 310 VNEYFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN 367
++ + + Y++ R+ + GP Y S L G++S R++ ++ ++ A
Sbjct: 213 FEDF---SERMPRYRDARDFPALKGPSY---LSVHLRFGTVSIRHL---ARTAWQQGGAG 263
Query: 368 DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGY 424
T+ L EL+WRD++ + Y + G K E++ + + LF++W +G TGY
Sbjct: 264 AETW--LNELLWRDFY--FQVLYHHPQVAEGHSFKPEFEHIPFPNGESLFKAWCEGRTGY 319
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
PL+DA M++++ TG+M NR R +A FLV+D+ IDWR G +F L+D+D +N G W
Sbjct: 320 PLVDAAMRQINQTGYMHNRLRMVAAGFLVKDLLIDWRWGERYFAEKLIDFDLAANNGGWQ 379
Query: 485 YGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLK 523
+ A G D + R F+ Q++ +D EG+++ ++P+L+
Sbjct: 380 WAASTGCDAQPWFRIFNPVTQSEKFDPEGKFIRKYVPELQ 419
>gi|292898878|ref|YP_003538247.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
gi|291198726|emb|CBJ45835.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
Length = 482
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 131/456 (28%), Positives = 218/456 (47%), Gaps = 38/456 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN AL A S + V+ ++ P+ Q H PK +A+F+ +
Sbjct: 5 LVWLRNDLRINDNHALYAACRSEQANVIALFIATPQ--QWRMHHMAPK----QAEFIWQS 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG-AHAV----YAQKETCSEELNVERLV 197
L D++++L +G+ L + +L + F H V Y + +E +
Sbjct: 59 LQDVQQSLAAKGIVLHVAQCDDFSASVTLLQDFCREHRVDRLFYNYQYEVNERQRDAAVE 118
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
R + V+S +D P L MY V+T F K+ K
Sbjct: 119 RALFEDDVVSQGFDDSLLLPPGSVLTGNREMYK-------------VFTPFSKAF-VKRL 164
Query: 258 VRGCIRIPSSFGPPPSVVDWGSV-PLIEQLE-LHSPKVS-KGMRFVGGESAALGRVNEYF 314
+G +P P P+V G++ P L+ P+ + F GE AA+ R+ E+
Sbjct: 165 QQG---LPECL-PAPAVRQSGAIEPEAGSLKPFDYPREDIESSLFPSGEKAAIARLREFC 220
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
+ + Y + R+ + D +++ S +LA+G +SPR + + + + L
Sbjct: 221 --QQAVTDYPKQRD-LPARDGTSRLSVYLATGVLSPRQCLHRLLKQHPAGLEDSRVFVWL 277
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKL-EYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
EL+WR+++R + + + H R KW D++ +W+ G TGYP++DA M++
Sbjct: 278 NELIWREFYRHLLVAFPALCRHQPFTRWTNSVKWRDDKQQLTAWQQGKTGYPIVDAAMRQ 337
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ G+M NR R I SFLV+D+ IDWR G +F + LLD D +N G W + A G D
Sbjct: 338 LNSLGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDA 397
Query: 494 RED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q + +D++GE++ WLP+L+ +P E
Sbjct: 398 APYFRIFNPTTQGERFDKDGEFIRRWLPELRQVPTE 433
>gi|407710068|ref|YP_006793932.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
gi|407238751|gb|AFT88949.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
Length = 499
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 130/461 (28%), Positives = 210/461 (45%), Gaps = 32/461 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTT---YHFGFPKTGAL--RA 136
+VWFR DLR DN AL A E V V+ D Q + P T A R
Sbjct: 13 TGLVWFRRDLRTTDNAALYYALKHCERVWCVFVFDTTILQPLVDRWQTRHPGTQAQDRRV 72
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+F++ L +L + L +G L++ +G P +++P LA AV+ + + +
Sbjct: 73 EFILGSLRELDEALRAQGGGLVVLYGDPADLVPKLADQLQVDAVFINHDYEPAAIERDEA 132
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
VR+ L + + ++ + +L+ G P+ ++ L + + K +
Sbjct: 133 VRERLAETGHAFRTFKDQVIFERAELLTGQKKPFTVFTPYKNAWLKQLTSFDLKPYPVET 192
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
+P + +P +EQL +P + G S A ++++ +
Sbjct: 193 YATRLASLPPALN--------RQLPTLEQLGF-APGNLAELDLPTGMSGAQRLLDDFLTR 243
Query: 317 KDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
D Y E R+ + GP Y S L G++S R + + + W L
Sbjct: 244 ID---SYAERRDFPAVKGPSY---LSVHLRFGTVSIRTLARLAHEMSLQPDGRGAATW-L 296
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQD---QKLFESWRDGCTGYPLID 428
EL+WRD++ F+ L + L G K EY +W Q F +W +G TGYPLID
Sbjct: 297 SELIWRDFY-FMILAHHPRLAG-GASFKEEYDRLRWEQGPEADAAFAAWCEGRTGYPLID 354
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M +L+ TG+M NR R + SFLV+D+G+DWR+G +F L DYD +N G W + A
Sbjct: 355 AAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAAS 414
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D + R F+ Q++ +D +G ++ +LPQL LP +
Sbjct: 415 TGCDAQPYFRIFNPSTQSEKFDADGRFIKRYLPQLGKLPAK 455
>gi|407940619|ref|YP_006856260.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
gi|407898413|gb|AFU47622.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
Length = 496
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 135/463 (29%), Positives = 214/463 (46%), Gaps = 39/463 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR DLR D AL A E V + D +H P+ R +F+ E L
Sbjct: 15 LVWFRRDLRAHDQAALYHALTRCEQVFCAFVFD-KHILD----ALPRADR-RVEFIRESL 68
Query: 144 ADLRKNL-----MNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
+L L RG L++ H + IP+L + AV+A + + L+ +RLVR
Sbjct: 69 VELDDTLRELSGQERG-GLIVWHAVASDAIPALVSALDVQAVFANHDDEPQALDRDRLVR 127
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
L + + T + +++ T + P+ ++ L + KS +
Sbjct: 128 TRLAAAGKAFHTFKDHTLLERSEVLTQTGNPYSVFTPYKNAWLKKIDAFQLKSYPVERHA 187
Query: 259 RGCIRIPSSFGPP-PSVVDWGSVPL-IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
P + P P++ D G P + QL L P ++G + + + LGR+ Y
Sbjct: 188 HHLAARPEAHCQPVPTLQDLGFEPTDLSQLRL--PTGARGAQQLFDDF--LGRIERY--- 240
Query: 317 KDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
++TRN + GP Y S L G+ISPR + E +T+ L
Sbjct: 241 -------EDTRNFPAVKGPSY---LSVHLRFGTISPRLLARTAHRLMLEGNPGATTW--L 288
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWS---QDQKLFESWRDGCTGYPLIDANM 431
EL+WRD++ I + + + P W + LF +W +G TGYPL+DA M
Sbjct: 289 SELIWRDFYFQILHHHPHVVGQSFKPAYDAIAWETGPEADALFAAWCEGRTGYPLVDAAM 348
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+++ TG+M NR R + SFLV+D+GIDWR G +F T L D+D +N G W + + G
Sbjct: 349 AQINQTGYMHNRLRMVVASFLVKDLGIDWRRGEAYFATHLNDFDLAANNGGWQWASSSGC 408
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D + R F+ Q++ +D EG+++ +LP L ALP + + P
Sbjct: 409 DAQPYFRIFNPVSQSEKFDPEGKFIRRYLPLLAALPTKALHAP 451
>gi|170017540|ref|YP_001728459.1| deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
gi|169804397|gb|ACA83015.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
Length = 478
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/465 (27%), Positives = 211/465 (45%), Gaps = 48/465 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V+IVW R D R+ DN AL A ++S+ VL V+ VDP +TT +L
Sbjct: 4 VSIVWIRRDFRIQDNLALAAATENSDSVLLVFIVDPEQIETT--------ASLNQSAFFA 55
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRK 199
+ NL N ++LL+ G PE L + E N + R+
Sbjct: 56 SAKAFQANLANENIHLLVLKGTPESQFEKLTAAL--------PEISDLYFNFDERGYGRQ 107
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT-HFRKSIEAKCTV 258
QQV Q+ H + ++ ++I + ++T +F++ I
Sbjct: 108 RDQQVAHHCQTTLGLKTHAYIDY----NLHSANEIKKADGAGYQIFTPYFKRWI------ 157
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGM-------RFVG--GESAALGR 309
+ P+ + + + IE L LH + + + VG GE+ AL
Sbjct: 158 --TLPKPTPVKASVTSLQGKQMANIEPLHLHQEGLLTSLINEKHDKQLVGQVGEAKALQT 215
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ ++ + L Y +T+ ++ D ++ S +L +G I+ R IY+ V + E E +
Sbjct: 216 LKDFI--QSHLSEY-DTQRDLPFLDATSHLSRYLRTGEIAIRTIYQAVIN-EPESEGQQT 271
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
+ EL WRDY+ I P + W + F W+ G TG+P++DA
Sbjct: 272 ---FIKELAWRDYYNMIYAMNPQQNTQSLRPEFQKIAWRNNHNDFLLWQTGQTGFPIVDA 328
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ TG+M NR R I SFL +D+ IDWR G ++F LLDYDP SN G W + A
Sbjct: 329 AMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQWAAST 388
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G D R F+ +Q+Q +D +G+++ ++P+L + ++ + P
Sbjct: 389 GTDSVPYFRIFNPTRQSQKFDPDGKFIKQFVPELSQITNDKIHEP 433
>gi|347758242|ref|YP_004865804.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590760|gb|AEP09802.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
Length = 476
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 142/459 (30%), Positives = 213/459 (46%), Gaps = 48/459 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+WFR DLR+ DN A A +S +LPV+ +D ++ G K GA +L L
Sbjct: 7 ILWFRQDLRLQDNPAYHAALESGSPILPVFILDDDNA------GLWKRGAASRWWLYHSL 60
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+ L K+L L I G +IIP L ++ AHAV+ + C E + R ++
Sbjct: 61 SSLNKSLNG---TLAIFRGDATKIIPELVEAACAHAVFWNR--CYEPWRIAR--DSKIKT 113
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ S KS+N L W T+ D P+ V+T F + C RG
Sbjct: 114 ALEQSSIAVKSSNASLLYEPW--TVSKDDGTPYK------VFTPFFRK---GCLGRGEPP 162
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELH--------SPKVSKGMR--FVGGESAALGRVNEY 313
+P G P V + P ++Q LH S K KG + GE A R+ ++
Sbjct: 163 VP--LGLPHHVPTF--FPRLKQ-SLHIDDLDLLPSIKWDKGFHDIWTPGEHGARERLGQF 217
Query: 314 FWKKDLLKVYKETRNEMLGPDYS--TKFSPWLASGSISPRYIYEEVK-SYERERVANDST 370
LK YKE RN PD ++ SP L G ISPR + V+ + E +
Sbjct: 218 L--DHGLKGYKEGRNH---PDRENVSRLSPHLHFGEISPRTAWHAVRHAMEADPTIETDG 272
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L EL WR++ + + + + + W ++ K +W+ G TGYP++DA
Sbjct: 273 DCFLSELGWREFSYSLLYTHPDLPTQPLQHKFAGFPWDKNDKALRAWQMGKTGYPIVDAG 332
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L TG+M NR R I SFL++D+ + W G EWF L+D D +N +W + AG G
Sbjct: 333 MRQLWQTGWMHNRVRMIVASFLIKDLMLPWTAGEEWFWDTLVDADLANNAASWQWVAGCG 392
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
D R F+ Q +D +G Y+ ++P+L ALP +
Sbjct: 393 ADAAPYFRIFNPVTQGTKFDPDGNYIRTFVPELAALPAK 431
>gi|383191021|ref|YP_005201149.1| deoxyribodipyrimidine photolyase [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|371589279|gb|AEX53009.1| deoxyribodipyrimidine photolyase [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 476
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 125/456 (27%), Positives = 212/456 (46%), Gaps = 41/456 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLR+ DN AL A D V+ V+ P Q H P+ +A F+ +
Sbjct: 5 LVWFRNDLRITDNRALHAACEDPQARVIAVFVATP--EQWKRHEMAPR----QAMFIYQH 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L+ L RG+ L + + K+ ++ K+ E + +
Sbjct: 59 LQALQHALAERGIVLHYHQCDDFADSVDWLKDFCKAEKVDTLFYNKQYEINERQRDAALE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ + VL +D P + MY VYT FR++ ++ T
Sbjct: 119 NAVSESVLCHAFDDSLLLPPGSVITGNGEMYK-------------VYTPFRRAFLSRLTE 165
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
+P+ PP+ G V + + P G F GE AA ++ + ++
Sbjct: 166 SDSRSLPA----PPAREHAGKVMMHRLMPFDYPLADIGDDFAVGEDAARNQLRSFC--RE 219
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS---YERERVANDSTYWVLF 375
++ Y R+ + D ++ SP+LA G +SPR +++ E+ + + W L
Sbjct: 220 QVQDYLGQRD-LPAVDGTSSLSPYLAIGVLSPRQCLNRLRTECPQVLEKTDSGAFGW-LN 277
Query: 376 ELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + + + H +G + +W + ++W++G TGYP++DA M+
Sbjct: 278 ELVWREFYRHLIVAWPKLCKHQPFVGWTDNV--RWRHAPEDLQAWKEGKTGYPIVDAAMR 335
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ I+WR G +F T LLD D +N G W +GA G D
Sbjct: 336 QLNATGWMHNRLRMIVASFLVKDLLINWREGERYFMTQLLDGDLAANNGGWQWGASTGTD 395
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
R F+ Q + +D+ G ++ W+P+L +P+
Sbjct: 396 AAPYFRIFNPTTQGERFDKAGRFIKAWVPELSDVPE 431
>gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
Length = 481
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 217/453 (47%), Gaps = 35/453 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLRV DN AL A D V+ V+ P+ Q H P+ A FL +
Sbjct: 5 LVWLRNDLRVTDNLALYAACQDEHARVIAVFIATPK--QWAAHDMAPRQAA----FLRQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKP-EEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L+ L +RG+ L ++ I L V A ELN R R
Sbjct: 59 LQLLQGALASRGIPLHYHQCDDFQDSIVWLDNFCQQQQVDALFYNQQYELNERR--RDEA 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
L+ QS + H + L G+ + + + ++T FR++ + + C
Sbjct: 117 FTAQLNRQSIACHSFHDSVLLPPGS-------VQTGNHEMYKIFTPFRRAFIQRLMMSDC 169
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK-GMRFVGGESAALGRVNEYFWKKDLL 320
+P+ P + + G+V L P+ S F GE AAL R+ + ++
Sbjct: 170 RCVPA----PQARQNSGAVELSPLEPFDYPQHSADNSLFPAGEEAALQRLRSFCREQVQD 225
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY---ERERVANDSTYWVLFEL 377
+ + R + G ++ SP+LA G +SPR + +++ ER + + W L EL
Sbjct: 226 YLQQRDRPAIAG---TSCLSPYLALGIVSPRQCFNRLRAECPDLLERSDSGAFTW-LNEL 281
Query: 378 MWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
+WR+++R + + Y H +G + +W+ ++ +W+ G TGYP++DA M++L
Sbjct: 282 IWREFYRHLLVAYPRLCQHHPFIGWTDAV--RWNHSEQQLIAWQQGQTGYPIVDAAMRQL 339
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I+ SFLV+D+ IDWR G +F + LLD D +N G W + A G D
Sbjct: 340 NETGWMHNRLRMISASFLVKDLLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAA 399
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D+EG ++ WLP+L A+P
Sbjct: 400 PYFRIFNPTTQGERFDKEGTFIRRWLPELAAVP 432
>gi|336476980|ref|YP_004616121.1| deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
gi|335930361|gb|AEH60902.1| Deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
Length = 457
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 134/475 (28%), Positives = 216/475 (45%), Gaps = 57/475 (12%)
Query: 77 RNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRA 136
R+ +++ FR DLR+ DN AL+ A + S+ V+P + DP + +F K+
Sbjct: 2 RSDYYISLFIFRRDLRIDDNTALINALEQSDAVIPCFIFDPAQIKNNEYFS--KSAF--- 56
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
QF+IE L DL++ R +L + +G ++I +L AV+ K+ +
Sbjct: 57 QFMIESLRDLKQQFDKRNSHLYLFYGDSTDVIRNLKHEVDPEAVFLNKDYTPFSKKRDSA 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT-HFRKSIEAK 255
+++ +S++ + L L D+I D VYT FRK+ +
Sbjct: 117 IKQ------ISTEYGMDFIDFHDLLLT------SPDEISTDQGKPYSVYTPFFRKASKVA 164
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIE-QLELHSPKVSKGMRFVGGESAALGRVNEYF 314
+ + + + S +P +E + HS VGG GR N
Sbjct: 165 VHIPEAVHQNNYYTSGLSTDKDDLLPKMEHEYGFHSS--------VGG-----GRDNALA 211
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
DL K + +T+ S G++S R +Y + S + D ++
Sbjct: 212 ILADLSKFADYEMDRNYPSKETTRLSAHNKFGTVSIREVYHSIAS----ELGPDHP--LI 265
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYPLIDANM 431
+L WRD+F + Y NS F G + +++ WS D + W G TG+P+IDA M
Sbjct: 266 GQLYWRDFFTHAA--YHNS-FVFGKSLREKFENIEWSSDNEALSRWCAGNTGFPIIDAGM 322
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L++TG+M NR R I SFLV+D+ IDW+ G ++F L+DYDPC N GNW + A G
Sbjct: 323 RQLNITGYMHNRIRMITASFLVKDLHIDWKWGEKYFAQKLVDYDPCVNNGNWQWAASTGY 382
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL------------PKERRNFP 533
D + R F+ Q + YD E Y+ W+ +L L P E+ N+P
Sbjct: 383 DSQPYFRMFNPWSQQKKYDPECIYIKEWVQELNELDPVSIHNLETRRPPEKINYP 437
>gi|423197809|ref|ZP_17184392.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
gi|404630927|gb|EKB27571.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
Length = 473
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 135/477 (28%), Positives = 224/477 (46%), Gaps = 53/477 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ DN AL + E V ++ + P +Q H K +R +FL+ +
Sbjct: 3 LVWFRNDLRLADNPALRHGCANDEPVAALFIISP--TQWRQH----KLAPVRQRFLLAQV 56
Query: 144 ADLRKNLMNRGLNL-LIRHGKPEEIIPSLA---KSFGAHAVYAQKETCSEELNVERLVRK 199
L + L G+ L L+R E+ +LA + G +YA + +EL + V
Sbjct: 57 DALGRELAALGIPLHLLRVETFAEVPAALAGLCRELGVTQLYANQAIEIDELRRDLAVTT 116
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + + + P +++ G+ + V+T F ++
Sbjct: 117 ALAEQGIGCHWFNGCCVLPPGRVLTGS------------GEMFKVFTPFSRAWLKALDED 164
Query: 260 GCI--RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
G + R P+ G P + W + + ++ +++ R+ GE+ A R+N++ +
Sbjct: 165 GFVIHRAPAPRGEP---LPWQPLAERDFVDAVLGELAADPRWPVGEAEASRRLNDFL--E 219
Query: 318 DLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVK---SYERERVANDSTYW 372
+ Y ETR+ + G ++ SP+LA+G ISPR ++ Y + A W
Sbjct: 220 QAVLDYGETRDFPAIAG---TSVLSPYLAAGIISPRQCVAALQQRLGYRPQSKAQPGFVW 276
Query: 373 VLFELMWRDYFR-FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
L EL+WR+++R + L S+ P WS D F +W +G TGYP++DA M
Sbjct: 277 -LNELIWREFYRHLLVLIPTLSMNRPFKPETSALPWSWDPDAFAAWCEGRTGYPIVDAAM 335
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+ L+ TG+M NR R I SFL +D+ I WR+G ++F + L+D D +N G W + AG G
Sbjct: 336 RCLNATGWMHNRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGA 395
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP-------------KERRNFPG 534
D R F+ Q Q +D +GE++ W+ +L LP K RR++P
Sbjct: 396 DAAPYFRVFNPTTQGQRFDPQGEFIRIWVSELADLPAAYLHQPHDWLRLKGRRDYPA 452
>gi|443288138|ref|ZP_21027232.1| Deoxyribodipyrimidine photo-lyase [Micromonospora lupini str. Lupac
08]
gi|385881715|emb|CCH22325.1| Deoxyribodipyrimidine photo-lyase [Micromonospora lupini str. Lupac
08]
Length = 441
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 129/449 (28%), Positives = 201/449 (44%), Gaps = 45/449 (10%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G AIV F DLRV D+ AL + + V+P+Y +DP A R +FL
Sbjct: 4 GTAIVLFTRDLRVHDHPALATTCAAFDRVVPLYVLDP---------ALAGLSANRTRFLH 54
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ LADLR L RG +L++R G P LA GA AV + N
Sbjct: 55 QALADLRDALRERGGDLVVRRGDPVAETIRLAGEVGATAVALSADVS------------N 102
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIEAKCTVR 259
+ + + +L+L G T+ + P V++ + ++ A R
Sbjct: 103 HARRRERRLRAECERHRLRLRLFPGLTVVEPGALRPGGGGDHYRVFSPYHRAW-AAARWR 161
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
+ P P V G VP E SP + GGE A R+ + W +L
Sbjct: 162 DELAAPRRIALPDGVRV-GRVPAPPAGE--SPDAA-----TGGERIARQRLTD--WLPEL 211
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
+ Y + ++M G D +++ SP+L G +SP + A D + + ++ W
Sbjct: 212 GR-YDDQHDDMAGDD-TSRLSPYLRFGCVSPLSVANR---------AGDRSGPFVRQVCW 260
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RD++ ++ + + R +W D +W +G TG P++DA M+++ G+
Sbjct: 261 RDFYYQVTAAF-PEISTAAYRRGATEQWRYDDDALTAWAEGRTGMPIVDAGMRQMRAQGW 319
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
NR R I +L + +G DWR G F LLD D +N GNW + AG GND + R F
Sbjct: 320 QHNRARLITAGYLTKHLGQDWRAGVAVFFRWLLDGDVANNSGNWQWVAGTGNDTKPYRGF 379
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKE 528
+ +QA+ YD G+YV W+P+L A+P +
Sbjct: 380 NPVRQAERYDPAGDYVRRWVPELSAVPGK 408
>gi|186682403|ref|YP_001865599.1| DNA photolyase [Nostoc punctiforme PCC 73102]
gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
Length = 481
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 132/470 (28%), Positives = 216/470 (45%), Gaps = 60/470 (12%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A S V+ V+C+DP + +R ++I
Sbjct: 4 LILFWHRRDLRISDNTGLAAAKRRSPKVVGVFCLDPHILERD------DVAPVRVTYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L++ G LLI H P + IP+LA++ A AV+ + +R + L
Sbjct: 58 CLQKLQERYAQVGSQLLILHADPVQAIPALAEAINAKAVFWNWDVEPYSQERDRTIINAL 117
Query: 202 QQ--VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS-------- 251
++ + +Q+ D+ N P D+I +S VYT F K+
Sbjct: 118 KEKGIEFLNQNWDQILNSP-------------DEIRTGGNSPYTVYTPFWKNWITKPKAN 164
Query: 252 -IEAKCTVRGCIRIPSSFG------PPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGES 304
+E V G PS D G + EQL + SP GE+
Sbjct: 165 PVETLQNVEGLTEAEQEIAKLSGSLTLPSAKDLGFI-WDEQL-IISP----------GEA 212
Query: 305 AALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY----EEVKSY 360
AA R+ E+ + Y+E RN D +++ S L G I R ++ E +++
Sbjct: 213 AAQERLEEF--TNKAITEYQEQRN-FPAVDGTSQLSAALKFGVIGIRTVWQATIEALENS 269
Query: 361 ERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWR 418
E A + W EL WR++++ Y G R + W +++ F++W
Sbjct: 270 RSEETAVNIRTWQQ-ELAWREFYQHA--MYNFPELADGAFRDTFKNFPWETNEEHFQAWC 326
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
+G TGYP++DA M++++ +G+M NR R I SFL +D+ I+ ++G ++F L+D D +
Sbjct: 327 EGRTGYPIVDAAMRQMNESGWMHNRCRMIVASFLTKDLLINPQLGEKYFMKHLIDGDLSA 386
Query: 479 NYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
N G W + A G DP+ R F+ Q Q +D EGEY+ W+ +L+++ E
Sbjct: 387 NNGGWQWSASSGMDPKPVRIFNPASQTQKFDPEGEYIRQWVSELRSVDTE 436
>gi|82775975|ref|YP_402322.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
gi|309786366|ref|ZP_07680992.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
gi|81240123|gb|ABB60833.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
gi|308925760|gb|EFP71241.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
Length = 472
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 133/453 (29%), Positives = 220/453 (48%), Gaps = 40/453 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R EII + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFQNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F+ E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFLVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAAEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVP 427
>gi|386845211|ref|YP_006263224.1| deoxyribodipyrimidine photo-lyase [Actinoplanes sp. SE50/110]
gi|359832715|gb|AEV81156.1| deoxyribodipyrimidine photo-lyase [Actinoplanes sp. SE50/110]
Length = 436
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 132/454 (29%), Positives = 203/454 (44%), Gaps = 65/454 (14%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G + F DLR+ DN L + V+P++ +DPR S + A R++FL
Sbjct: 2 GARVALFTRDLRIHDNPLL----SGPDPVVPLFVLDPRLSGLS---------ANRSRFLH 48
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETC--SEELNVERLVR 198
+ LADLR +L RG +L+IR G P ++A A + + ++
Sbjct: 49 QSLADLRNSLRERGADLVIREGDPVAETIAVASEVDASTITVAADVTGYAQRRERRLRDE 108
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE----- 253
+ + V S T P G Y V+T + K+ E
Sbjct: 109 RFRVKTVPSVTVLPPGTVRPGG----GGESYR-------------VFTPYFKAWEKAGWR 151
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
A G + +P+ P G +P E SP GGE+ GR
Sbjct: 152 APSATPGKVAMPAGIAP-------GRLP--EMPAGDSPDA-----VAGGETE--GRRRLQ 195
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS--TY 371
W+K++ + Y E ++M D +++ S +L G +SP + K A+DS
Sbjct: 196 AWQKEMAR-YAEDHDDMAA-DNTSRLSAYLRFGCLSPLELALAAK-------ADDSPGAQ 246
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
L +L WRD++ ++ + + K + W D W+DG TG P++DA M
Sbjct: 247 AYLRQLCWRDFYYQVTATF-PEISTRPLREKADQNWRYDDDALRHWQDGLTGVPIVDAGM 305
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L G+M NR R I +FL + +GIDWR G +WF LLD D +N GNW + AG GN
Sbjct: 306 RQLRAEGWMHNRARLITAAFLTKHLGIDWRPGLQWFFRWLLDGDVPNNSGNWQWTAGTGN 365
Query: 492 DPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
D R R F+ +QAQ +D +G YV ++P+LK +
Sbjct: 366 DTRPYRRFNPIRQAQRFDAQGVYVRRYVPELKDI 399
>gi|428320773|ref|YP_007118655.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
gi|428244453|gb|AFZ10239.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
Length = 484
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 125/458 (27%), Positives = 204/458 (44%), Gaps = 41/458 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A S V+ ++C+D R ++I
Sbjct: 7 LILFWHRRDLRISDNIGLAAARQQSPKVVGIFCLDRNI------LNRDDVAPARVTYMIG 60
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L G LLI P IP LA + A AV+ + +R V L
Sbjct: 61 CLQKLSSRYREAGSQLLIIQDDPILGIPKLATAINAQAVFWNWDVEPYAKQRDRSVSNAL 120
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
QQ + Q++ W ++ D+I + VYT F K +K +
Sbjct: 121 QQAGI------------QVQNFWDQVLHAPDEIRSGTGTPYTVYTPFWKKWNSKPKAQPV 168
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQ---LELHSPKVSKG------MRFVGGESAALGRVNE 312
+P ++ + + + Q +E +S G + GE AA ++ E
Sbjct: 169 ETLPITYLELMTGLTAEEQAIANQAGAMETVPTALSLGFIWENPLVIEPGEDAAQQKLEE 228
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK----SYERERVAND 368
+ + Y+ RN + +++ S L G+I R +++ + + E
Sbjct: 229 FC--DRAIYEYQGQRN-FPAINGTSQLSAALKFGAIGIRTVWQATQIVMDTCRSEEACTS 285
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTGYP 425
W E+ WR++++ + GP + +K W D+KLF++W G TGYP
Sbjct: 286 IRTWQQ-EIAWREFYQHAMYNFPE---LADGPYRQAFKDFPWENDEKLFQAWCRGKTGYP 341
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
+IDA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L+D D +N G W +
Sbjct: 342 IIDAAMRQLNQTGWMHNRCRMIVASFLTKDLMINWQWGEKYFMQKLIDGDLSANNGGWQW 401
Query: 486 GAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
A G DP+ R F+ QAQ +D EGEY+ +W+P+L+
Sbjct: 402 SASSGMDPKPLRIFNPGSQAQKFDPEGEYIRHWVPELR 439
>gi|363582222|ref|ZP_09315032.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium
HQM9]
Length = 433
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/447 (26%), Positives = 210/447 (46%), Gaps = 45/447 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ I WFR DLR+ DN A ++ VLP++ D T P+ A R F+ +
Sbjct: 4 LTIFWFRRDLRLHDNTGFFFALSENKNVLPIFIFD-----TEILGKLPENDA-RVSFIHD 57
Query: 142 CLADLRKNL--MNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
LAD+ L MN+G+++ HG+P I + K + VY + L ++++
Sbjct: 58 SLADMHSKLKEMNKGISIF--HGEPIAIFQEIEKKYKVTKVYTNHDYEPYALERDKILTA 115
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
++ + ++ + +++ D P+ VYT ++ + +
Sbjct: 116 FFEEKAIKFETYKDQVYFEKDEIV------KADGDPYM------VYTPYKNKWKEVFKTK 163
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
+ PS S++++ S S ++ +G + + + +V Y L
Sbjct: 164 ELKQYPSQ-DHLKSIIEFSSYE------------SCNLKDLGFKKSKI-KVAPYMATPGL 209
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
++ Y++TRN + ++K P L G++S R I ++ + + E +W EL+W
Sbjct: 210 IESYEDTRNIPGNEEGTSKLGPHLRFGTVSVREILKKAIAEKNE------VFWS--ELIW 261
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
R++F I + ++ P+ +W ++ FE W++G TGYP +DA M+EL+ TG+
Sbjct: 262 REFFMQILWHFPHTKNASFKPKYDRIEWRNNEAEFEKWKNGETGYPFVDAGMRELNATGY 321
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RY 498
M NR R + SFL + + IDWR G +F LLDY+ SN GNW + AG G D R
Sbjct: 322 MHNRVRMLVGSFLCKHLLIDWRWGEAYFAEKLLDYEMSSNIGNWQWVAGTGVDAAPYFRI 381
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKAL 525
F+ Q Q +D++ EY+ W+ L L
Sbjct: 382 FNPTTQIQKFDKQHEYINRWVTDLNEL 408
>gi|335425144|ref|ZP_08554132.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
gi|334886580|gb|EGM24937.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
Length = 483
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 145/490 (29%), Positives = 217/490 (44%), Gaps = 57/490 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSS-EMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
I+WFR DLR+ DN AL A D + ++PVY P + G GA + +L +
Sbjct: 6 IIWFRRDLRLADNPALRAALDDDFDSIVPVYIHAP------HELGDWAPGAAQRVWLHDS 59
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA L G L+IR G +++ +L GA +VY + + L + R K ++
Sbjct: 60 LAAFSDALEALGSRLVIRRGDTTDVLDTLIAESGATSVYWNR--LYDPLTIAR--DKKVK 115
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q + + S L W T+ P+ V+T F K+I+ + V +
Sbjct: 116 QHLADNDIETASFKAHLLHEPW--TVETKQGGPYK------VFTPFWKAIKNRA-VDTPL 166
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKV--SKGMR--FVGGESAALGRVNEYFWKKD 318
P + P V + LEL PK+ +G+R + GE A R+ + D
Sbjct: 167 AAPDAL---PEVWSRIGSESLASLELR-PKIGWDRGIRETWSPGEDGAHERLETFL--AD 220
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY---ERE----RVANDSTY 371
LK Y E R+E P ++ SP L G I PR I V+ + RE R DS
Sbjct: 221 ALKTYDEARDEPARPG-TSYLSPHLHWGEIGPRQIVHRVEEWLDDHREIKTLRTQADS-- 277
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
L E+ WR++ + + + R ++ WS D + W+ G TG P++DA M
Sbjct: 278 -FLSEIGWREFAHHVLYHFPETPDEPLDARFKDFPWSGDDDALKRWQQGQTGIPMVDAGM 336
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TG+M NR R SFL +++ + W+ G WF L+D D +N W + AG G
Sbjct: 337 RELWATGYMHNRLRMTVASFLTKNLRVAWQHGERWFWGTLVDADLANNTLGWQWAAGCGA 396
Query: 492 DPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------------GG 535
D R F+ +Q + +D +GEYV W+P+L L + P G
Sbjct: 397 DAAPFFRIFNPARQGERFDAKGEYVRRWVPELADLDNRHIHEPWNAPANALKAANIVLGD 456
Query: 536 SYIEQIVSLK 545
Y E IV LK
Sbjct: 457 DYPEPIVDLK 466
>gi|421877716|ref|ZP_16309257.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE C10]
gi|372556494|emb|CCF25377.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE C10]
Length = 478
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 131/469 (27%), Positives = 210/469 (44%), Gaps = 56/469 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V+IVW R D R+ DN AL A ++S+ VL V+ VDP +TT +L
Sbjct: 4 VSIVWIRRDFRIQDNLALAAATENSDSVLLVFIVDPEQIETT--------ASLNQSAFFA 55
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRK 199
+ NL N ++LL+ G PE L + E N + R+
Sbjct: 56 SAKAFQANLANENIHLLVLKGTPESQFEKLTAAL--------PEISDLYFNFDERGYGRQ 107
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
QQV Q+ H + ++ ++I + ++T + K
Sbjct: 108 RDQQVAHHCQTTLGLKTHAYIDY----NLHSANEIKKADGAGYQIFTPYFKR-------- 155
Query: 260 GCIRIPSSFGPPPSVVDWGSVPL-----IEQLELHSPKVSKGM-------RFVG--GESA 305
I +P P P V S+ IE L LH + + + VG GE+
Sbjct: 156 -WITLPK---PTPVKVSVTSLQEKQMANIEPLHLHQEGLLTSLINEKHDKQLVGQVGEAK 211
Query: 306 ALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV 365
AL + ++ + L Y +T+ ++ D ++ S +L +G I+ R IY+ V + E E
Sbjct: 212 ALQTLKDFI--QSHLAEY-DTQRDLPFLDATSHLSRYLRTGEIAIRTIYQAVIN-EPESE 267
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYP 425
+ + EL WRDY+ I P + W + F W+ G TG+P
Sbjct: 268 GQQT---FIKELAWRDYYNMIYAMNPQQNTQSLRPEFQKIAWRNNHNDFLLWQTGQTGFP 324
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M++L+ TG+M NR R I SFL +D+ IDWR G ++F LLDYDP SN G W +
Sbjct: 325 IVDAAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQW 384
Query: 486 GAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
A G D R F+ +Q+Q +D +G+++ ++P+L + ++ + P
Sbjct: 385 AASTGTDSVPYFRIFNPTRQSQKFDPDGQFIKQFVPELSQITNDKIHEP 433
>gi|351729025|ref|ZP_08946716.1| deoxyribodipyrimidine photo-lyase [Acidovorax radicis N35]
Length = 496
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 131/461 (28%), Positives = 216/461 (46%), Gaps = 35/461 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR DLR D AL +A + V + D P+T R +F+ E L
Sbjct: 15 LVWFRRDLRANDQAALYRALTQCQQVHCAFVFDREILN-----ALPRTDR-RVEFIRESL 68
Query: 144 ADLRKNL-MNRGL---NLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+L + L M G L++ H + IP+LA + G AV+A + + L + VR
Sbjct: 69 VELDETLRMLSGHAQGGLIVLHAVASDAIPALANALGVQAVFANHDDEPQALERDSQVRT 128
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA-KCTV 258
L + + T + +++ T + P+ ++ L K ++A + T
Sbjct: 129 QLATAGRAFHTFKDHTILERSEVLTQTGNPYSVFTPYKNAWL--------KKVDAFQLTS 180
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
R P P +VP + L + +S+ ++ G S A +++ +
Sbjct: 181 YPVERHAHRLAPRPQE-HRQAVPTLASLGFEATALSQ-LKLPTGASGAQQLFDDFLGR-- 236
Query: 319 LLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
++ Y++TRN + GP Y S L G+ISPR + + +T+ L E
Sbjct: 237 -IERYEDTRNFPAVKGPSY---LSVHLRFGTISPRLLARTAHGLMLQGNPGATTW--LSE 290
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWS---QDQKLFESWRDGCTGYPLIDANMKE 433
L+WRD++ I + + + H P +W + LF +W +G TGYPL+DA M +
Sbjct: 291 LIWRDFYFQILHHHPHVVGHSFKPAYDAIQWESGPEADALFAAWCEGRTGYPLVDAAMAQ 350
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
++ TG+M NR R + SFLV+D+GIDWR G +F T L D+D +N G W + + G D
Sbjct: 351 INQTGYMHNRLRMVVASFLVKDLGIDWRWGEAYFATHLNDFDLAANNGGWQWASSSGCDA 410
Query: 494 RED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+ R F+ Q++ +D EG+++ LPQL LP + + P
Sbjct: 411 QPYFRIFNPVSQSEKFDPEGKFIRRCLPQLAGLPTKALHAP 451
>gi|336173293|ref|YP_004580431.1| deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
gi|334727865|gb|AEH02003.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
Length = 434
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 134/474 (28%), Positives = 216/474 (45%), Gaps = 59/474 (12%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQF 138
K V I WFR DLR+ DN +A + VLP++ D P+ A R F
Sbjct: 2 SKTVNIFWFRRDLRLDDNVGFFEALKAEHPVLPIFIFDSEILDE-----LPENDA-RVSF 55
Query: 139 LIECLADLRKNLMNRG-LNLLIRHGKPEEIIPSLAKSFGAHAVYAQK--ETCSEELNVER 195
+ E L ++R+ L + +L + +GKP +I SL K + + VY E ++E + E
Sbjct: 56 IFETLQNMRQTLQDENNSSLAMFYGKPIDIYKSLIKDYNINTVYTNHDYEPYAKERDSE- 114
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
+Q + ++ N K+ ++ +++ D VYT + K +AK
Sbjct: 115 -----IQSFLEENKINFKTYK--------DQVIFEKNEVVKDDGKPYVVYTPYMKKWKAK 161
Query: 256 CTVRGC-IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
I ++F LIE L + +S +G + ++ + +Y
Sbjct: 162 FKDYDLKIYYTNTFLNN----------LIENTRLPNLSLSD----IGFKKSSQD-IKDYT 206
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
L++ Y+ TRN D +++ P L G++S R K ++ N+ +W
Sbjct: 207 VTPTLIQEYEATRN-FPAKDTTSRLGPHLRFGTVSVR------KMVKKATAENNEIFWQ- 258
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR++F I + ++ + KW + K F++W DG TGYPL+DA M++L
Sbjct: 259 -ELIWREFFMQILWHFPDTHKDAFKAKYDNIKWRNNNKEFKAWCDGKTGYPLVDAGMRQL 317
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TGFM NR R + SFL + + IDWR G +F L DYD SN GNW + AG G D
Sbjct: 318 NQTGFMHNRVRMLVGSFLCKHLLIDWRKGEAYFAQKLHDYDMASNVGNWQWVAGSGVDAS 377
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHG 547
R F+ Q +D++ +Y+ W+P+ F Y E+IV K
Sbjct: 378 PYFRIFNPTTQIDKFDKDKKYIKQWIPE----------FGTDKYPEKIVDHKEA 421
>gi|320585730|gb|EFW98409.1| deoxyribodipyrimidine photo-lyase [Grosmannia clavigera kw1407]
Length = 584
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 134/486 (27%), Positives = 232/486 (47%), Gaps = 40/486 (8%)
Query: 58 EINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVY 113
E+ +EET ++ + + K + WF++DLR LDN AL A + ++M ++ +Y
Sbjct: 67 ELTDALEET----AAQMHEVDPKDAMVHWFKSDLRTLDNRALAMASEKAQMAGVPLIGLY 122
Query: 114 CVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIP---- 169
V P+ + H T +R F++ LA L+++L G+ L + + + IP
Sbjct: 123 VVSPQDWEA--HL----TAPVRVDFVLRTLAVLQRDLAELGIPLWMETVEQRKQIPHRIL 176
Query: 170 SLAKSFGAHAVYAQKETCSEELNVER-LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTM 228
SL +GA+ ++A E +EL E +VR+ Q + +D P +
Sbjct: 177 SLMDKWGANHLFANMEYEVDELRRETAMVRQCAAQGKSMAVVHDICVVPPGNLTSKSSGK 236
Query: 229 YHLDDIPFDHSSLPDVYT--HFRKSIE-AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQ 285
+ P+ + VYT H I+ K + R P+ P S P +
Sbjct: 237 AYAVYTPWFRAWKQHVYTNEHILGPIDNPKTQAKTKTRWPAELMDCPI----PSAPKGKT 292
Query: 286 LELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLAS 345
L + + GE A+ R+ + + + Y + R+ + ++ SP+LA+
Sbjct: 293 LGTKAEAKRFCTLWPAGEHEAMRRLEHFC--DERVADYSDERD-FPAVEATSSLSPYLAA 349
Query: 346 GSISPRYIYEEVKSYERERVANDST----YWVLFELMWRDYFRFISLKYGNSLFHLGGPR 401
G +S R + + + +D T W+ E+ WRD++R I + + + F+ P
Sbjct: 350 GVLSARTVIRTARDRTGAKTLDDGTEGFRVWI-SEVSWRDFYRHILVAWPHVCFN--KPF 406
Query: 402 KLEYK---WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGI 458
KL Y WS + F +W +G TGYP++DA M++L+ G++ NR R I SFL +D+ +
Sbjct: 407 KLAYSGIAWSYNHDHFTAWTEGRTGYPIVDAAMRQLNKQGWLHNRCRMIVASFLAKDLLL 466
Query: 459 DWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAY 517
DWR+G +F L+D D SN G W + A VG DP+ R F+ Q++ +D +G Y+
Sbjct: 467 DWRLGERYFMEHLVDGDFASNSGGWGFSASVGVDPQPYFRIFNPILQSERFDPDGTYIRR 526
Query: 518 WLPQLK 523
W+P+L+
Sbjct: 527 WVPELQ 532
>gi|238028072|ref|YP_002912303.1| deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
Length = 489
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 130/464 (28%), Positives = 214/464 (46%), Gaps = 51/464 (10%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFR+DLRV DN AL +A +S ++ VY + ++ P GA+R +L
Sbjct: 12 ALVWFRDDLRVTDNPALARAAESGRPLVCVYVFERDGTR-------PLGGAVR-WWLDGA 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L L +G L++ G E I +LA GA AVY + + ++++L+
Sbjct: 64 LRSLDAKLAAQGGGLVVLEGDERETIAALAGELGAGAVYWNRRYDGLARETDAALKRSLK 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + +S + + H ++ G+ V+T + ++ A + +
Sbjct: 124 EAGIEVESFNGALLHEPWEIRTGSGGAF------------QVFTAYWRAARAAGELPAPL 171
Query: 263 ---------RIPSSFGPPPSVVD-WGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRV 310
R+P + + +D G +P+ P + G+R + E L R+
Sbjct: 172 AEPAKWRFHRLPEALARRATRIDALGLLPV-------RPDWAGGLREAWEPSEEGGLARL 224
Query: 311 NEYFWKKDLLKVYKETRNEMLGPD--YSTKFSPWLASGSISPRYIYEEVKSYERE---RV 365
+ K+ ++ Y + R+ PD +++ SP+L G +S R ++ ++ RE V
Sbjct: 225 EAFLDKQ--IRGYGDARDR---PDRPATSRLSPYLRFGQLSARQVWHAAQAAGREGGAAV 279
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYP 425
A D L EL WR++ + + R W D+ F +W G TGYP
Sbjct: 280 AADIEK-FLSELGWREFNTSLLYHFPELPMRNYRDRFDAMPWRSDEAAFAAWCRGRTGYP 338
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
L+DA M+EL TG+M NR R + SFL++ + IDWR G WF L+D D +N NW +
Sbjct: 339 LVDAGMRELWATGWMHNRVRMVTASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQW 398
Query: 486 GAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
AG G D R F+ Q + +D +G YV W+P+L LP +
Sbjct: 399 VAGSGADAAPYFRIFNPVMQGRKFDPDGAYVRRWVPELAGLPAD 442
>gi|171319558|ref|ZP_02908656.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
gi|171095203|gb|EDT40197.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
Length = 500
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 133/457 (29%), Positives = 208/457 (45%), Gaps = 40/457 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFR+DLRV D AL++A S ++ VY D T G +L
Sbjct: 10 AVVWFRDDLRVTDQPALMRAVASGRPLVCVYVDD------TGEGAGRALGGAARWWLHGS 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA L L G LL+ G I + GA AVY + + + + ++ +L+
Sbjct: 64 LATLDAALARHGGRLLLLRGDARREIERVVHDTGAAAVYWNRRYAQPQRDADAALKASLK 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
L +S++ S + +++ G PF V+T + +++ TV +
Sbjct: 124 AHGLEVESSNGSLLNEPWEVMTGAG------TPFQ------VFTAYWRAVRRDRTVAAPL 171
Query: 263 RIPS--SFGPPPSVVDWGSVPL-IEQLELHSPKVSKGMRFV---GGESAALGRVNEYFWK 316
P +F P P+ V ++ L L H+P + G+R E+ A R++ +
Sbjct: 172 PAPERIAFHPWPAGVRERALALDTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFV-- 229
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF- 375
L Y +TR+ G +++ SP+L G++SPR ++ V+ + A + F
Sbjct: 230 HASLAGYADTRDRP-GEPATSRLSPFLRFGNVSPRQVWHAVQGVAQAGGAACAAGAEKFL 288
Query: 376 -ELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
EL WR++ + F +L N W D +W+ G TGYPL+DA
Sbjct: 289 SELGWREFSHVLLYHFPALATDNFRAQFDA-----IPWRDDPAALRAWQRGLTGYPLVDA 343
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M+EL TG+M NR R + SFLV+ + IDWR G WF L+D D +N NW + AG
Sbjct: 344 GMRELWTTGWMHNRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGC 403
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G D R F+ Q + +D +G YV W+P+L L
Sbjct: 404 GADAAPYFRIFNPVAQGRKFDPQGAYVRRWVPELAGL 440
>gi|423202670|ref|ZP_17189249.1| hypothetical protein HMPREF1167_02832 [Aeromonas veronii AER39]
gi|404614866|gb|EKB11845.1| hypothetical protein HMPREF1167_02832 [Aeromonas veronii AER39]
Length = 473
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 219/458 (47%), Gaps = 44/458 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ DN AL A E V ++ + P +Q H K +R +F++ +
Sbjct: 3 LVWFRNDLRLADNPALRHACAGDEPVAALFIISP--TQWRQH----KMAPIRQRFMLAQV 56
Query: 144 ADLRKNLMNRGLNL-LIR---HGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+L + L G+ L L+R + + L + G +YA + +E + V
Sbjct: 57 DELGRELAALGIPLHLLRVETFAEAPAALADLCRELGVTQLYANQAIEIDEQRRDHAVTA 116
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + +S + P +++ G+ + V+T F ++
Sbjct: 117 ALAEQAVSCHWLNGCCVLPPGRVLTGS------------GDMFKVFTPFSRAWLKALDEE 164
Query: 260 GCI--RIPSSFGPPPSVVDWGSVPLIEQLELHSP--KVSKGMRFVGGESAALGRVNEYFW 315
G + R P+ G P + W PL E+ + +++ + GE+ AL R+N F
Sbjct: 165 GFVIHRAPTPRGEP---LPWQ--PLAERAWVDEALGELTVDPHWPVGEAEALRRLN-IFL 218
Query: 316 KKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVK---SYERERVANDST 370
++ +L Y ETR+ + G ++ SP+LA+G ISPR ++ Y + A
Sbjct: 219 EQAVLD-YGETRDFPAIAG---TSVLSPYLAAGIISPRQCVAALQQRLGYRPQSKAQPGF 274
Query: 371 YWVLFELMWRDYFR-FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
W L EL+WR+++R + L S+ P WS D F +W +G TGYP++DA
Sbjct: 275 VW-LNELIWREFYRHLLVLIPTLSMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDA 333
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M+ L+ TG+M NR R I SFL +D+ I WR+G ++F + L+D D +N G W + AG
Sbjct: 334 AMRCLNATGWMHNRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGT 393
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q Q +D +GE++ W+ +L +P
Sbjct: 394 GADAAPYFRVFNPTTQGQRFDPQGEFIRNWVTELADIP 431
>gi|432849009|ref|ZP_20080379.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
gi|431401751|gb|ELG85085.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
Length = 472
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 134/457 (29%), Positives = 220/457 (48%), Gaps = 48/457 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAKLINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L LR L +G+ LL R EII + A++ H Y + +E ++ VE
Sbjct: 59 LNGLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R VL +D P + MY + PF ++ L R+ +
Sbjct: 119 RTLRN-----VLCEGFDDSVILPPGAVMTGNHEMYKVF-TPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKL---EYKWSQDQKLFESWRDGCTGYPLIDAN 430
L EL+WR+++R + Y + H P + +W + ++W++G TGYP++DA
Sbjct: 273 LNELIWREFYRHLITYYPSLCKHR--PFIVWTDRVQWQSNSAHLQAWQEGKTGYPIVDAA 330
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 331 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTG 390
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 391 TDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVP 427
>gi|227114750|ref|ZP_03828406.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 492
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 218/462 (47%), Gaps = 51/462 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLRV DN AL A D + VL V+ P Q H P+ A FL+E
Sbjct: 9 VVWLRNDLRVTDNLALYAACQDPNATVLAVFIATP--VQWEKHDMAPRQAA----FLLEN 62
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
L +++ L +G+ L + ++ A+ Y + +E L ++ V
Sbjct: 63 LRLVQQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLR-DKQV 121
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS-----I 252
+ L V+ +D P L MY V+T FR++ +
Sbjct: 122 KDRLADSVVCHGYHDSLLLPPGSVLTGNGEMY-------------KVFTPFRQAFIKRLL 168
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVN 311
E+ T C+ P + G P + ++E P+ G F GE AAL ++
Sbjct: 169 ESDTT---CVPAPDARGEPIN-------NMVELAPFSYPQREVDGDDFPSGERAALQQLR 218
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY---ERERVAND 368
+ ++ ++ Y + R+ P ++K SP+LA G +SPR + +++ ER
Sbjct: 219 RFC--REQVQDYDQQRDFPALPG-TSKLSPYLALGIVSPRQCFNRLRAECPEMLERREGG 275
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPLI 427
+ W EL+WR+++R + + + H ++ KW + ++ +W+ G TGYP++
Sbjct: 276 AFTW-FNELVWREFYRHLIVSWPQLCKHRPFTAWTQWVKWRESREDLAAWQQGKTGYPIV 334
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L+ TG+M NR R I SFLV+D+ IDWR G +F + LLD D +N G W + A
Sbjct: 335 DAAMRQLNETGWMHNRLRMICASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAA 394
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D R F+ Q + +D EG ++ +WLP+L A+P +
Sbjct: 395 STGTDAAPYFRIFNPTTQGERFDPEGRFIRHWLPELAAVPDK 436
>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10987]
gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
ATCC 10987]
Length = 476
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 138/472 (29%), Positives = 220/472 (46%), Gaps = 35/472 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV F+ D R+ DN AL KA S E V+PVY D S G+ +L +
Sbjct: 6 IVMFQKDFRLYDNPALFKATQSGE-VVPVYVHDETFSM----------GSASKWWLHHAI 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
D++K L G L+IR G EE I SL + G AVY C + ++ +N++
Sbjct: 55 IDVKKQLEALGSTLIIRKGSTEEEILSLIEQLGITAVYWN--ICYDPDRLQ--FNQNMKM 110
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR-GCI 262
++ K N L W + D+ ++ Y F+K + +K + I
Sbjct: 111 MLEDKGITCKEFNSHLLLEPW--MIKKKDNT--EYKVFTPFYNAFQKQVISKPISKVQSI 166
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
+ SS SV + +P I H + + E A ++F K L
Sbjct: 167 KWGSSLPESLSVTELHLLPTIPWTS-HIESI-----WDPTEEGAYKTCKKFFSSK--LAS 218
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERE-RVANDSTYWVLFELMW 379
Y E R+ + + +P+L+ G IS R++Y + KS ER+ + + +L+W
Sbjct: 219 YSEGRD-FPNQNAHSMLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLIW 277
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
R++ ++ Y +++ + W+ +++L W+ G TGYP IDA M+EL TGF
Sbjct: 278 REFSYYLLYHYPFTVYKPLNKNFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGF 337
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RY 498
M NR R SFLV+ + I W+ GA+WF LLD D +N W + AG G D R
Sbjct: 338 MHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRI 397
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--GGSYIEQIVSLKHGN 548
F+ Q + +D++GEY+ W+P+LK +P + + P +I Q ++K G+
Sbjct: 398 FNPITQGEKFDKDGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGD 449
>gi|427420013|ref|ZP_18910196.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
gi|425762726|gb|EKV03579.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
Length = 482
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 127/460 (27%), Positives = 213/460 (46%), Gaps = 57/460 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A + S V+ +C+DP + R +++ C+
Sbjct: 6 LFWHRRDLRISDNLGLAAARERSPKVVGFFCLDPGILEAD------DVAPARVAYMLGCV 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A L++ G LLI G P E IP A + GA AVY ++ E + +R N
Sbjct: 60 AQLQERYQAVGSELLILKGNPVEQIPQTASTLGAMAVYWNRDV--EPYSRQR---DNAVA 114
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
L+ + + T W ++ D+ VY F ++ + +
Sbjct: 115 AALTEKGIEMRTK------TWDQLLHAPGDVLTGAGKPYTVYGPFWRNWQNLVKL----- 163
Query: 264 IPSSFGPPPSVVDWGSVPL-------IEQLELHSPKV-----SKGMRFVGGESAALGRVN 311
PP+ G+V L ++++ L S K + + GE AA R
Sbjct: 164 -------PPAATLQGAVGLSDAERGLVDEIALPSAKALGFTWAAPLPLEPGERAA--RAQ 214
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE-EVKSYER----ERVA 366
F+ ++ Y E RN ++ S L G++ R +++ + +Y+ E
Sbjct: 215 LEFFGHKAIEAYDEQRN-FPAVTGTSLLSAALKFGAVGMREVWQTAMTAYDACNSDEGRT 273
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRDGCTG 423
N T+ + EL WR++++ + + L H GP + +K W D++ F +W +G TG
Sbjct: 274 NVQTW--MKELAWREFYQHVMFFF-PELAH--GPYRDAWKDFPWDNDEEKFAAWCEGRTG 328
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YP++DA M++L+ TG+M NR R I SFL +D+ IDWR G ++F L+D D +N G W
Sbjct: 329 YPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIIDWRWGEKYFMQKLVDGDLSANNGGW 388
Query: 484 TYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
+ A G DP+ R F+ QA+ +D + +Y+ WLP+++
Sbjct: 389 QWSASSGMDPKPLRIFNPASQAKKFDADADYIRQWLPEIR 428
>gi|417097726|ref|ZP_11959367.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
Length = 482
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 215/460 (46%), Gaps = 39/460 (8%)
Query: 75 LKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
+ ++ I+WFR DLR+ DN+AL A S ++ +Y +P + T GA
Sbjct: 1 MAKDAAKPVILWFRKDLRLDDNKALNAAHFSGRPIISLYIREPEAAGTG------PLGAA 54
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
+A +L L L +L R L + G+ E++ SL K A AV+ + ++++
Sbjct: 55 QAWWLHHSLEALDGSLRKRRGGLSLASGEALEVLRSLIKQSDADAVFWNRRYDPPGISID 114
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ L++ + +S H +L+ G+ T Y VYT F +++E
Sbjct: 115 ARIEHELEKRAIEVKSFGGQLLHEPSQLMTGSGTPYR-------------VYTPFWRALE 161
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLE---LHSPKVSKGMRFVG----GESAA 306
+ + IPS +P E+LE L S + F GE A
Sbjct: 162 SSIEAE-PLDIPSKLQLA------SKLPGSEKLESWKLLSTQPDWASNFADLCTPGEEGA 214
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
++ + +D L YKE R+ P ++ SP LA G ISP I++ + + A
Sbjct: 215 QEKLRTFI--EDRLDGYKENRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSKHVPA 271
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
D ++ E+ WR++ + + R ++W + +K F++W G TGYP+
Sbjct: 272 ADIVHFRK-EIAWREFSYHLLAHFPRLATANWDDRFDGFEWRRAEKDFKAWSRGMTGYPI 330
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L G+M NR R IA SFL++D+ +DWR G WF L+D DP +N +W +
Sbjct: 331 VDAGMRQLWRYGWMHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWV 390
Query: 487 AGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
AG G D R F+ Q + +D +G++V +P+L+ L
Sbjct: 391 AGSGADASPFFRIFNPVLQGEKFDPDGDFVRAHVPELRKL 430
>gi|411010414|ref|ZP_11386743.1| deoxyribodipyrimidine photolyase [Aeromonas aquariorum AAK1]
Length = 473
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 134/477 (28%), Positives = 225/477 (47%), Gaps = 53/477 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ DN AL + V +Y + P +Q H K +R +FL+ +
Sbjct: 3 LVWFRNDLRLADNPALRHGCANDGPVAALYILSP--TQWRQH----KLAPVRQRFLLAQV 56
Query: 144 ADLRKNLMNRGLNL-LIRHGKPEEIIPSLA---KSFGAHAVYAQKETCSEELNVERLVRK 199
L ++L G+ L L+R E+ +LA + G +YA + +E ++ V
Sbjct: 57 DALGRDLAALGIPLHLLRVETFAEVPAALADLCRELGVTQLYANQTIEIDEQRRDQAVTT 116
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + + + P +++ G+ + V+T F ++
Sbjct: 117 ALAEQGIGCHWLNGCCVLPPGRVLTGS------------GEMFKVFTPFSRAWLKALDED 164
Query: 260 GCI--RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
G + R+P+ G P + W + + ++ +++ R+ GE+ A R+N++ +
Sbjct: 165 GFVIHRVPAPRGEP---LPWQPLAERDFVDAALGELAADPRWPVGEAEASRRLNDFL--E 219
Query: 318 DLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVK---SYERERVANDSTYW 372
+ Y ETR+ + G ++ SP+LA+G ISPR ++ Y + A W
Sbjct: 220 QAVLDYGETRDFPAIAG---TSVLSPYLAAGIISPRQCVAALQQRLGYRPQSKAQPGFVW 276
Query: 373 VLFELMWRDYFR-FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
L EL+WR+++R + L S+ P WS D F +W +G TGYP++DA M
Sbjct: 277 -LNELIWREFYRHLLVLIPTLSMNRPFKPETSALPWSWDPDAFAAWCEGRTGYPIVDAAM 335
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+ L+ TG+M NR R I SFL +D+ I WR+G ++F + L+D D +N G W + AG G
Sbjct: 336 RCLNATGWMHNRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGA 395
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP-------------KERRNFPG 534
D R F+ Q Q +D +GE++ W+ +L LP K RR++P
Sbjct: 396 DAAPYFRVFNPTTQGQRFDPQGEFIRTWVSELADLPAAYLHQPHDWLRLKGRRDYPA 452
>gi|402823473|ref|ZP_10872896.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. LH128]
gi|402262964|gb|EJU12904.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. LH128]
Length = 455
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 133/454 (29%), Positives = 201/454 (44%), Gaps = 57/454 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVD---PRHSQTTYHFGFPKTGALRAQFLI 140
IVW R DLR+ D A+ +A V+PVY +D PRH G +L
Sbjct: 6 IVWLRRDLRLSDQPAIAEA-ARKGPVIPVYILDDETPRHR---------AMGGASRWWLH 55
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
L L L +G L++R G+ +E++ LA+ GA V+A N E+ V K
Sbjct: 56 HSLESLGAALQEKGSRLILRRGRSDEVLAKLAEETGAQEVHALHHYEPWWRNAEKAVGKV 115
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L L L G + + L +YT F +++ +
Sbjct: 116 LT-----------------LCLHHGNYLAPPGSVTTGSGGLYKIYTPFWRALRERMPPHD 158
Query: 261 ------CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV--GGESAALGRVNE 312
I +PS + ++ DW +P +P + GMR + GE A R++
Sbjct: 159 PQRRPQTIAVPSKWPESDTLPDWKLLPT-------TPDWAGGMRAMWEPGEKGARKRLHA 211
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
+ + Y+ RN + G + ++ SP L G ISP ++ V A S
Sbjct: 212 FV---EEASAYEGQRN-LPGVEGTSMLSPHLHFGEISPAQVWHAVAD------AGGSVAT 261
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
L E+ WRDY + + L+Y + + W + E+W+ G TGYP++DA M+
Sbjct: 262 FLGEIGWRDYAQNVILQYPDYGGRYARDPFGAFPWRTSTRDLEAWQQGRTGYPIVDAGMR 321
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L TG+M NR R IA SFLV+ + IDWR G +WF L+D D SN NW + AG G D
Sbjct: 322 QLWHTGWMHNRVRMIAASFLVKHLLIDWRAGEQWFWDTLVDADYGSNAVNWQWTAGSGVD 381
Query: 493 PRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R + Q++ +D G Y+ W+P+L L
Sbjct: 382 ANMFVRIMAPLTQSEKFDAAG-YIREWVPELADL 414
>gi|414596902|ref|ZP_11446474.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE E16]
gi|390482266|emb|CCF28535.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum LBAE E16]
Length = 478
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 131/469 (27%), Positives = 210/469 (44%), Gaps = 56/469 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V+IVW R D R+ DN AL A ++S+ VL V+ VDP +TT +L
Sbjct: 4 VSIVWIRRDFRIQDNLALAAATENSDSVLLVFIVDPEQIETT--------ASLNQSAFFA 55
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRK 199
+ NL N ++LL+ G PE L + E N + R+
Sbjct: 56 SAKVFQANLANENIHLLVLKGTPESQFEKLTAAL--------PEISDLYFNFDERGYGRQ 107
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
QQV Q+ H + ++ ++I + ++T + K
Sbjct: 108 RDQQVAHHCQTTLGLKTHAYIDY----NLHSANEIKKADGAGYQIFTPYFKR-------- 155
Query: 260 GCIRIPSSFGPPPSVVDWGSVPL-----IEQLELHSPKVSKGM-------RFVG--GESA 305
I +P P P V S+ IE L LH + + + VG GE+
Sbjct: 156 -WITLPK---PKPVKVSVTSLQEKQMANIEPLHLHQEGLLTSLINEKHDKQLVGQVGEAK 211
Query: 306 ALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV 365
AL + ++ + L Y +T+ ++ D ++ S +L +G I+ R IY+ V + E E
Sbjct: 212 ALQTLKDFI--QSHLAEY-DTQRDLPFLDATSHLSRYLRTGEIAIRTIYQAVIN-EPESE 267
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYP 425
+ + EL WRDY+ I P + W + F W+ G TG+P
Sbjct: 268 GQQT---FIKELAWRDYYNMIYAMNPQQNTQSLRPEFQKIAWRNNHNDFLLWQTGQTGFP 324
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M++L+ TG+M NR R I SFL +D+ IDWR G ++F LLDYDP SN G W +
Sbjct: 325 IVDAAMRQLNQTGWMHNRLRMIVASFLTKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQW 384
Query: 486 GAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
A G D R F+ +Q+Q +D +G+++ ++P+L + ++ + P
Sbjct: 385 AASTGTDSVPYFRIFNPTRQSQKFDPDGQFIKQFVPELSQITNDKIHEP 433
>gi|113954039|ref|YP_729488.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
gi|113881390|gb|ABI46348.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
Length = 492
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 143/505 (28%), Positives = 220/505 (43%), Gaps = 77/505 (15%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A S V VY +DP Q P R FL+E L
Sbjct: 7 LFWHRRDLRLADNLGLQAAEAISPAVTGVYVLDPALIQPPESL--PPMAPARLWFLVESL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L++ + G LL+ G P +++P LA A AV + +VE R+ +Q
Sbjct: 65 RELQQRWRDVGSRLLVVAGDPVQLLPRLASLLEAPAVVWSR-------DVEPYARERDRQ 117
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V + Q++ ++ + W + D I V+ F ++ + G
Sbjct: 118 VAKALQADGC-----KVLVDWDQLLLAPDLIKTGGGDPYRVFGPFLRNWRGQVERSG--- 169
Query: 264 IPSSFGPPPSVVDW---------------GSVPLIEQLELHSPKVSKGMRFVGGESAALG 308
PS+ PP +++D G + Q +L +V G R G
Sbjct: 170 -PSTVDPPRALIDLEAEMLEAVLGGEGALGRLCTEGQRQLEQLQVEHGFR---GTDLCPS 225
Query: 309 RVNEYFWK-------KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY---EEVK 358
R E L Y+ RN G ++ S L+ G++SPR + + VK
Sbjct: 226 RPGEAAAAAQLAAFADGALLAYEPDRN-FPGMPGTSYLSAGLSVGTVSPRQAWCAAQGVK 284
Query: 359 SYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHL----GGPRKLEYK---WSQDQ 411
R + EL WR++ Y +LFH GP + +++ W +
Sbjct: 285 EIARSDEQQQAITVWEQELCWREF-------YQQALFHFPELADGPYREQWRRFPWENNS 337
Query: 412 KLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCL 471
FE+WR+G TG P+IDA M++L+ +G+M NR R I SFLV+D+ DWR G F
Sbjct: 338 DWFEAWREGQTGMPIIDAAMRQLNQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELE 397
Query: 472 LDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK-------- 523
+D D +N G W + A G DP+ R F+ QA +D EGEY+ W+P+L+
Sbjct: 398 VDGDLAANNGGWQWSASSGMDPKPLRIFNPATQATKFDAEGEYIREWVPELRHVNTKDLI 457
Query: 524 --ALPK-ERRNFPGGSYIEQIVSLK 545
+P ERR++P EQ+++ K
Sbjct: 458 SGEIPALERRSYP-----EQLINHK 477
>gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
Length = 471
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 142/452 (31%), Positives = 217/452 (48%), Gaps = 40/452 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ I WFR DLR+ DN AL A ++ E V+P+Y ++ + +G + G +L
Sbjct: 5 IVIHWFRQDLRLSDNPALSAACEAGE-VIPLYILNDKE------YGAREFGGATKNWLYY 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRK 199
L L ++L + LLIR G P II SL + GA V+ + C E VE ++
Sbjct: 58 SLKALNESLKGQ---LLIRRGDPAVIINSLIQETGAAGVFWNR--CYEPWRVEHDAQLKT 112
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF-RKSIEAKCTV 258
+L++ ++++S + S L+W D S V+T F RK
Sbjct: 113 DLEENGITAKSFNGS-------LLWEPWQVGKPD-----GSPYKVFTPFYRKGCLQAEEP 160
Query: 259 RGCIRIPSSFGPPPSVVDWG-SVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
R + +P P + S+ + LE + GE AA R+ +F +
Sbjct: 161 RKPLPVPDQLRIHPLNTEGALSIDELNLLEDRPWSAQVSSHWEHGEKAAQNRLYAFF--E 218
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
D L YK+ RN ++++ SP L G ISP I+ + S+E R + EL
Sbjct: 219 DGLSDYKDGRN-FPALTHTSRLSPHLHFGEISPNQIWWVLGSHEETRDIDHFRS----EL 273
Query: 378 MWRDYFRFISLKYGN-SLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
WR++ SL + N SL K + + W D + +W+ G TG P++DA M+EL
Sbjct: 274 GWREFS--YSLLFNNPSLPKSNLNEKFDNFPWLSDDQRLLAWQKGQTGVPIVDAGMRELW 331
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R I SFLV+++ +DWR+G EWF CL+D D +N +W + AG G D
Sbjct: 332 QTGYMHNRLRMIVGSFLVKNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAP 391
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D G+Y +LP+LK LP
Sbjct: 392 YFRIFNPILQGEKFDAHGDYTRRFLPELKDLP 423
>gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040847|gb|ACT57643.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 483
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 131/470 (27%), Positives = 221/470 (47%), Gaps = 45/470 (9%)
Query: 78 NGKGVAIVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRA 136
V +VW RNDLR+ DN+AL A +S+ V+ V+ P Q H A ++
Sbjct: 5 TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQH----GISARQS 58
Query: 137 QFLIECLADLRKNLMNRGLNLLIRH----GKPEEIIPSLAKSFGAHAVYAQKETCSEELN 192
F+ L ++K+L +G+ E + S ++ ++ E+
Sbjct: 59 HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
Query: 193 VERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI 252
++L+ K LQ V+ +D P L MY VYT FRK++
Sbjct: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY-------------KVYTPFRKAL 165
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSV-PLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
++ ++ P P++ G V P P + F GE AL +
Sbjct: 166 -----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN--DS 369
++ K+ + Y E R ++ +++ SP+L+ G +SPR + +K + +
Sbjct: 221 KFC--KEKVYYYVEQR-DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGP-----RKLEYKWSQDQKLFESWRDGCTGY 424
+ L EL+WR+++R + Y + +G P K+E W++D L ++W+ G TG+
Sbjct: 278 AFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIE--WNKDSHLLQAWKQGYTGF 333
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
P+IDA M++L+ G+M NR R I SFLV+D+ +DWR+G E+F + LLD D SN G W
Sbjct: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
Query: 485 YGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+ A GND R F+ Q + +D +G ++ +WLP+L +P + + P
Sbjct: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
>gi|422016104|ref|ZP_16362694.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
gi|414095551|gb|EKT57213.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
Length = 481
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 128/465 (27%), Positives = 220/465 (47%), Gaps = 41/465 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQF 138
+ +VWFRNDLRV+DN+AL A D VL ++ P Q H P+ + F
Sbjct: 5 QACHLVWFRNDLRVMDNKALSSACSDPQAKVLALFTATPE--QWRAHDVSPR----QITF 58
Query: 139 LIECLADLRKNLMNRGLNLLIRHG----KPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
L + L +LR +L G+ L+ + + + A+ A A++ + E N +
Sbjct: 59 LHQNLIELRDSLAKLGIPLICQTTPDFLSAAQWVLDFAEQQQADALFFNHQYELNERNRD 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
+ K QQ + D + P + + VYT FR++
Sbjct: 119 EWLIK--QQPSFRVHAFDDALLLPP------------KSVSNQKGEMYQVYTPFRRAFVT 164
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIE--QLELHSPKVSKGMRFVGGESAALGRVNE 312
+ TV + F P+ G++ IE QL V F GE AAL R+
Sbjct: 165 QLTV-------TDFRSVPAPKSRGAILSIEKQQLLFEHDAVEIAAHFPSGEVAALQRLRL 217
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV--ANDST 370
+ ++ + Y++ R ++ D +++ SP+LA G +SPR + + + +
Sbjct: 218 FC--RERAQDYQQNR-DIPSLDGTSQLSPYLAVGVLSPRQCLNRLLTENPHTFDSPDSGS 274
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPLIDA 429
+ L EL+WR+++ + + + + H ++ +W+ F +W++G TGYP++DA
Sbjct: 275 FTWLNELIWREFYHHLLVAFPHLCRHQPFIEWTKHIQWNSSDTDFNAWKNGLTGYPIVDA 334
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ TG+M NR R I SFLV+D+ IDWR G ++F L+D +N G W + A
Sbjct: 335 AMRQLNTTGWMHNRLRMITASFLVKDLLIDWRRGEQYFIQQLIDGTLAANNGGWQWSAST 394
Query: 490 GNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G D R F+ Q + +D +G++V +WLP+L+ +P + + P
Sbjct: 395 GIDASPWFRIFNPTTQGKKFDPDGKFVRHWLPELRTVPDQYIHTP 439
>gi|422020244|ref|ZP_16366784.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
gi|414101839|gb|EKT63436.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
Length = 477
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 225/462 (48%), Gaps = 55/462 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLRV DN+AL A D + V+ VY P Q H P+ A FL +
Sbjct: 6 LVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPE--QWAAHNVSPRQIA----FLHQN 59
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSE-------ELNVER 195
L +L+ L RG+ L+ + A S +AQ++ + ELN ER
Sbjct: 60 LVELQHTLAKRGIPLIC------HTTATFADSVKWLLNFAQQQNATGLYFNHQYELN-ER 112
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
L + L+Q +Q + T L L G+ D + VYT FR++ ++
Sbjct: 113 LRDEQLRQ---QAQHLNIFTYDDALLLPPGSVTTQKGD-------MYQVYTPFRRAFLSQ 162
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQ---LELHSPKVSKGMRFVGGESAALGRVNE 312
+ P+ P P G+ +E L +H V +F GE AAL ++ +
Sbjct: 163 LMMSDFCSFPA---PKPR----GAALAVENTHPLFVHQ-SVEISPQFTAGEHAALAKLRQ 214
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPR-----YIYEEVKSYERERVAN 367
+ + ++ Y+ R ++ D +++ SP+LA G +SPR + E + ++ +
Sbjct: 215 FC--SERVQDYQRDR-DIPAIDGTSQLSPYLALGVLSPRQCVNRLLAENPQVFDSQESGG 271
Query: 368 DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPL 426
S W L EL+WR+++ + + + H ++ +W+ D+ +W++G TGYP+
Sbjct: 272 FS--W-LNELIWREFYSHLLVAFPRLCRHQPFIEWTQHIQWNPDETALTAWKNGQTGYPI 328
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ TG+M NR R I SFLV+D+ +DWR G +F + L+D +N G W +
Sbjct: 329 VDAAMRQLNQTGWMHNRLRMIVASFLVKDLLVDWRKGEHYFMSQLIDGTLAANNGGWQWS 388
Query: 487 AGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
A G D R F+ Q + +D +G ++ WLP+L+ +P+
Sbjct: 389 ASTGVDASPWFRIFNPTTQGKKFDPQGTFIREWLPELRDVPE 430
>gi|402566030|ref|YP_006615375.1| deoxyribodipyrimidine photo-lyase [Burkholderia cepacia GG4]
gi|402247227|gb|AFQ47681.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cepacia GG4]
Length = 492
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 137/457 (29%), Positives = 212/457 (46%), Gaps = 40/457 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AIVWFR+DLRV D AL +A S ++ V+ D T G P GA R +L
Sbjct: 10 AIVWFRDDLRVTDQPALTRAVASGRPLVCVFVDD-----TGEGAGRPLGGAAR-WWLHGS 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA L L G LL+ G I +A GA AVY + + + + ++ +L+
Sbjct: 64 LAALDAALARHGGRLLLLRGDARREIERVAHDTGAAAVYWNRRYAQPQRDADAALKASLK 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
L +S++ S + +++ G PF V+T + +++ TV +
Sbjct: 124 ARGLEVESSNGSLLNEPWEVLTGAG------TPFQ------VFTAYWRAVRRDRTVDAPL 171
Query: 263 RIPS--SFGP-PPSVVDWGSVPLIEQLELHSPKVSKGMRFV---GGESAALGRVNEYFWK 316
P+ +F P P V + L H+P + G+R E+ A R++ +
Sbjct: 172 PEPARIAFHPWPADVRERALALDALALRPHAPDWAGGLRDAWPTPDEAGAHARLDAF--S 229
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF- 375
+ L Y +TR+ P +++ SP+L G++SPR +++ V+ + A + F
Sbjct: 230 VESLAGYADTRDRPDQP-ATSRLSPFLRFGNLSPRQVWQAVQGAAQADGAACAAGAEKFL 288
Query: 376 -ELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
EL WR++ + F +L + W D +W+ G TGYPL+DA
Sbjct: 289 SELGWREFSYTLLYHFPALATDSFRAQFNA-----MPWRDDPAALRAWQRGLTGYPLVDA 343
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M+EL TG+M NR R + SFLV+ + IDWR G WF L+D DP +N NW + AG
Sbjct: 344 GMRELWTTGWMHNRVRMVVASFLVKHLLIDWRAGEAWFHDTLVDADPANNPANWQWVAGC 403
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G D R F+ Q + +D G YV W+P+L L
Sbjct: 404 GADAAPYFRIFNPVMQGRKFDPHGAYVRRWVPELAGL 440
>gi|384045337|ref|YP_005493354.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
gi|345443028|gb|AEN88045.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
Length = 475
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/456 (26%), Positives = 212/456 (46%), Gaps = 39/456 (8%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
K IVW R D R++DN AL A MV+PVY D + G+ +L
Sbjct: 2 KKTIIVWIRKDFRLVDNPALFHA-AKEGMVVPVYIHDDDEESSM--------GSASKWWL 52
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
L D + ++ L+I+ G P++++ L A +Y + L + K
Sbjct: 53 HHALNDFKTSIEKIEGTLIIKKGNPKDVLQKLIHETNAQDIYWNRRYEPHALKRD----K 108
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
LQ Q N ++ L W T + D P+ V+T + K+ +
Sbjct: 109 ELQAFFSEQQINIRTFEGFLLHEPWKITKENGD--PYK------VFTAYYKASQKHAVSS 160
Query: 260 GCIRIPS--SFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY--FW 315
++ S +F + + L+ + S ++ G +N + F
Sbjct: 161 TVKKVTSIHAFSSSIESLSVSDLDLLPSIPWDETIKS------TWDATEQGAINSFKTFL 214
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS----TY 371
K LL + E + +++ SP+ ASG +S R +Y +++ + E+V++++ T
Sbjct: 215 KNKLL--HYEKGRDFPAEAFNSFLSPYFASGQLSARVLYHYLRN-KAEKVSSNAFEHQTE 271
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
+ +L+WRD+ + + ++ + +++W+ + ++W++G TGYPL+DA M
Sbjct: 272 MFIRQLVWRDFAYQLLYHFPHTTSEPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGM 331
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TGFM NR R +A SFLV+ + I W+ GA WF L+D D +N W + AG G
Sbjct: 332 RELWETGFMHNRVRMVAASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWIAGSGA 391
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D R F+ Q++ +D+EGEY+ WLP+L+ LP
Sbjct: 392 DAAPYFRIFNPTAQSEKFDKEGEYIKKWLPELRDLP 427
>gi|424814657|ref|ZP_18239835.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
gi|339758273|gb|EGQ43530.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
Length = 450
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/450 (27%), Positives = 209/450 (46%), Gaps = 49/450 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I R+DLR+ DN L A +S +PVY DPR KTG + F E L
Sbjct: 3 IFLHRDDLRIHDNRGL-DAASASGKTIPVYIDDPRIRD--------KTGTNKRAFREEGL 53
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
LRK +RG L++R GK + + S+ + ++ + +R + ++
Sbjct: 54 QKLRKKYEDRGSGLIVRKGKTGDELKSIIEERDVEEIFFARSYTP----TKRKIGNEIKA 109
Query: 204 VVLSSQS-NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ + ++S ND+ PQ D+ ++ + Y ++K +
Sbjct: 110 LDIETKSVNDRLLVEPQ-------------DLKQEYDTFSPFYREWKK-----------V 145
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
+ P ++ GS E E+ + + GE AAL R + K+ L+
Sbjct: 146 QKKPPADKPENLASIGS----EMPEMKAEPTADIPD--AGEDAALNRWVRF--KRKNLES 197
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERERVANDSTYWVLF--ELMW 379
YK+ R+++ P+Y +K S + +SG I R + ++ V+ + E ++ + + E+ W
Sbjct: 198 YKDRRDDVANPEYVSKLSMYYSSGMIGKRKVLKDTVQMIDEENDSDKIRNYAKYRNEIAW 257
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
++F + N++ H E W D + FE+W+ G TG P +DA M++L G+
Sbjct: 258 GEFFYQVMYHNPNAVHHNYKEIPNEINWKNDSREFEAWKKGQTGIPFVDAGMRQLRNEGY 317
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
M NR RQ SFL + + DWR GA+ F L+D++ SN G W + A G D R F
Sbjct: 318 MHNRLRQNVASFLTKHLMTDWRKGAKVFRKHLVDHNVPSNNGGWQWSASTGTDSIPIRIF 377
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKER 529
+ KQ ++YD + EY+ +P+L++L E+
Sbjct: 378 NPIKQGRDYDEDAEYIKRHVPELRSLDPEK 407
>gi|428306556|ref|YP_007143381.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
gi|428248091|gb|AFZ13871.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
Length = 474
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/452 (25%), Positives = 210/452 (46%), Gaps = 36/452 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A ++ V+ V+C+DP + R ++I CL
Sbjct: 6 LFWHRRDLRISDNVGLAVARQQTQKVVGVFCLDPNILERD------DVAPARVTYMIGCL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L++ G LLI +P IP LA+S A AV+ + +R + L++
Sbjct: 60 ESLQQRYAEVGSELLILFNEPTTAIPKLAESLNAKAVFWNWDVEPYAKERDRTILAALKE 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC------T 257
+++Q+ W ++ ++I +YT F K+ +K
Sbjct: 120 KGIATQN------------FWDQLLHSPEEIRSGSGQPYTIYTPFWKNWISKAKSTPAPA 167
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
++ IR+ + +P L + + GE+AA ++ +
Sbjct: 168 LQNAIRLTDTEKEAARQAGVVELPTASYLGF---IWNNNLVISPGEAAAQAKLATFC--D 222
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE--RVANDSTYWVLF 375
+ Y+E RN D +++ S L G+I R +++ + + + A S
Sbjct: 223 RTIDQYQEQRN-FPAVDGTSQLSAALKFGAIGIRTVWDAIATLYQNSPESAQASIQTWQQ 281
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
EL WR++++ + + G R+ ++ W+ + + F++W +G TGYP++DA M++
Sbjct: 282 ELAWREFYQHAIYNFPD--LAKGAYREAFKDFPWNDNSEHFQAWCEGKTGYPIVDAAMRQ 339
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
++ G+M NR R I SFL +D+ ++W++G ++F L+D D +N G W + A G DP
Sbjct: 340 MNTIGWMHNRCRMIVASFLTKDLLLNWQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDP 399
Query: 494 REDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ R F+ QAQ +D +G Y+ +WLP+L ++
Sbjct: 400 KPVRIFNPASQAQKFDLDGSYIRHWLPELSSV 431
>gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
Length = 493
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 132/467 (28%), Positives = 209/467 (44%), Gaps = 34/467 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ------TTYHFGFPKTGALR 135
A+VWFR DLR D+ AL A E V V+ D Q H G P R
Sbjct: 7 TALVWFRRDLRTTDHAALYHALKHCERVWCVFVFDTTILQPLIDTWQARHPGAPAQDR-R 65
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER 195
+F++ L +L L +G L++ +G P +++P LA AV+A + + +
Sbjct: 66 VEFILASLRELDDALRAQGGGLIVLYGDPADLVPKLADELRVDAVFANHDYEPAAIERDE 125
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
VR+ L + + + + +L+ G P+ ++ L + + + K +
Sbjct: 126 TVRERLAEAGRACLTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLTSFYLKPYPVE 185
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+P +P +EQL +P + G S A ++++
Sbjct: 186 TYANRLAALPPGLN--------RQLPTLEQLGF-APGNLAELDLPTGMSGAQRLLDDFVT 236
Query: 316 KKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
+ + Y E R+ GP Y S L G++S R + + + W
Sbjct: 237 R---IASYAERRDFPAARGPSY---LSVHLRFGTVSIRTLARLAHEISLQPDGRGAATW- 289
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQD---QKLFESWRDGCTGYPLI 427
L EL+WRD++ F+ L + L G K EY +W Q F +W +G TGYPLI
Sbjct: 290 LSELIWRDFY-FMILSHHPRLAS-GASFKQEYDALRWEQGPAADAAFAAWCEGRTGYPLI 347
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M +L+ TG+M NR R + SFLV+D+GIDWR G +F L DYD +N G W + A
Sbjct: 348 DAAMLQLNRTGYMHNRLRMVTASFLVKDLGIDWRRGERYFADQLNDYDLAANNGGWQWAA 407
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G D + R F+ Q++ +D +G ++ +LPQL LP + + P
Sbjct: 408 STGCDAQPYFRIFNPITQSEKFDADGRFIKRYLPQLAKLPAKWVHAP 454
>gi|449491122|ref|XP_004158807.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 544
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 211/461 (45%), Gaps = 31/461 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ---TTYHFGFPKTGALRAQFL 139
+++WFR +R+ DN AL A ++ + PV+ +DP + + + + G + G R +FL
Sbjct: 7 SLMWFRKGIRIHDNPALEYAAKGAKFLYPVFVIDPHYMEPDPSAFSLGSSRAGLNRIRFL 66
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+E L DL NL G LL+ HG+P E++ + KE ++L E
Sbjct: 67 LESLVDLDLNLKKLGSRLLVLHGEPGEVL-----------IRCLKEWNVKKLCFEYDTDP 115
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
Q + + Q++ + + T D I + S P Y F K A
Sbjct: 116 YYQALDIRVQNHASAAGIEVFSPVSHTLFNPADIIQKNGGSPPLSYQSFLKL--AGEPSW 173
Query: 260 GCIRIPSSFGPPPSVVDWG-----SVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
C + ++ P V D G VP I+ L F GGE+ AL R+ E
Sbjct: 174 ACAPLSTTVSSLPPVGDTGRSEISDVPTIKDLGYEDMAKDDWTPFRGGETEALKRLKESM 233
Query: 315 WKKDLLKVYKETRNE---MLGPDYSTKFSPWLASGSISPRYIYEEVKS-YERERVANDST 370
KD + +++ + + L P +T SP+L G +S RY Y+ ++ Y+ +
Sbjct: 234 SNKDWVAKFEKPKGDPSAFLKP-ATTVLSPYLKFGCLSSRYFYQCIQEIYKNVKGHTSPP 292
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLID 428
++ +L+WR++F + +G F K+ + W+ D +L +WRD TG+P ID
Sbjct: 293 VSLVGQLLWREFF--YTAAFGTPNFDRMKDNKICKQIPWNDDNELLAAWRDARTGFPWID 350
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
A M +L G+M + R FL R D+ + W G + FE L+D D N NW + +
Sbjct: 351 AIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNANWLWLS 410
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
+ +R +S + YD G+++ ++LP LK +PK+
Sbjct: 411 CSSFFYQYNRVYSPITFGKKYDPNGDFIRHFLPVLKDMPKQ 451
>gi|398837372|ref|ZP_10594673.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. YR522]
gi|398208714|gb|EJM95423.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. YR522]
Length = 497
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 205/467 (43%), Gaps = 39/467 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++VWFR DLR D+ AL A S V V+ D G + R F+++
Sbjct: 7 SLVWFRRDLRDTDHAALYYALSQSRQVSCVFVFDRDILDALAADGVGQDR--RVDFILQS 64
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL- 201
+ +L L G L++RH IP LA+ G AV+A + + + ++ V L
Sbjct: 65 VTELDTALRGAGGGLIVRHASATAAIPELARQLGVQAVFANTDYEPQAVERDQAVADRLS 124
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG- 260
+ +L S D+ ++ D+I + V+T ++ + A+
Sbjct: 125 KDGILFFSSKDQ-------------VIFEKDEILTRSDTPFSVFTPYKNAWMARLAEADG 171
Query: 261 --------CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
R + PPP+ + +P I QL +P ++ G S A +++
Sbjct: 172 DFFLKPYPVARYARALVPPPAALA-QPIPSIAQLGF-APSNLDELKIPTGMSGADALLDD 229
Query: 313 YFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
+ D + Y R+ + GP Y S L G++S R +
Sbjct: 230 FL---DRIGAYGTARDFPAVKGPSY---LSVHLRFGTVSIRSLARAALQAMHAGRGAAGA 283
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKW---SQDQKLFESWRDGCTGYPLI 427
L EL WRD++ I + P W +Q + LF +W +G TGYPL+
Sbjct: 284 ATWLSELTWRDFYFMILHHHPRVARQAFKPDYDAIAWERGAQAETLFAAWCEGRTGYPLV 343
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M +++ +G+M NR R + SFL +D+GIDWR G +F L DYD +N G W + +
Sbjct: 344 DAAMLQINQSGYMHNRLRMVVASFLTKDLGIDWRWGERYFAIHLNDYDLSANNGGWQWAS 403
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G D + R F+ Q++ +D EG+++ +LPQL LP +R + P
Sbjct: 404 SSGCDAQPYFRIFNPVTQSEKFDAEGKFIRRYLPQLAKLPAKRIHAP 450
>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 477
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 132/468 (28%), Positives = 210/468 (44%), Gaps = 53/468 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
I WFR DLR+ D L A + VLPV+ DP G +L
Sbjct: 4 TTIFWFRQDLRLTDLPGLCAAAERG-AVLPVFIHDPSLGNEW------SLGGASQWWLHY 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L+ ++ RG L++R G PE+++ +L + GA AVY+ ++ ++E + + L
Sbjct: 57 SLKSLQASIEARGGELILRRGAPEDVLTALIEESGASAVYSSRQYQPWATSLETTLHETL 116
Query: 202 QQVVLSSQSNDKST-NHPQLKLIWGTTMYHL----------DDIPFDHSSLPDVYTHFRK 250
+ + + P L G T Y + + P + S+PDV H
Sbjct: 117 TDEGIDYKRYAGTLLFEPGSVLTGGGTPYKVFTPFWRACLQSEAPREPRSIPDVEWHVGV 176
Query: 251 SIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALG 308
E SV DW P +P + G + GE A
Sbjct: 177 RSE-------------------SVEDWNLRP-------SNPNWADGWESLWSPGEEGATR 210
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV--A 366
R++++ +K Y + R+ + Y+++ SP L G ISPR I+ + Y ++R+ A
Sbjct: 211 RLDDFL--AGTVKHYGDGRD-IPAEAYTSRLSPHLKFGEISPRQIWHAAQ-YAKQRLPEA 266
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
+S L E+ WR++ + ++ + + W+ QK ++W+ G TGYP+
Sbjct: 267 AESIDKFLSEIGWREFCYTLLDQFPEMPNKPFKAQFDHFPWAGTQKALKAWQKGLTGYPI 326
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M+EL TGFM NR R I SFL + + WR G WF CL+D D SN +W +
Sbjct: 327 VDAGMRELWQTGFMHNRVRMITGSFLTKHLLTHWRAGELWFWDCLVDADIASNACSWQWV 386
Query: 487 AGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
AG G D R F+ Q + +D+ GEYV ++P++ LP + + P
Sbjct: 387 AGSGADASPYFRIFNPIAQGEKFDKAGEYVRRYVPEIANLPDKYIHKP 434
>gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
Length = 434
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 206/447 (46%), Gaps = 47/447 (10%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQF 138
GK V I WFR DLR+ DN L +A + VLP++ D G P R F
Sbjct: 2 GKSVNIFWFRRDLRLEDNRGLCEALGAGRPVLPIFIFDSEILD-----GLPADDP-RVTF 55
Query: 139 LIECLADLRKNLM-NRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
L + L +LR + N+G +L I HGKP EI LA + V+ + + E
Sbjct: 56 LHDRLQELRSRMQENQGSSLAIYHGKPLEIFKELASDWDVGQVFTNR-------DYEPYA 108
Query: 198 RKNLQQV--VLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
R +QV LS Q + T Q+ ++ D++ D VYT + K + K
Sbjct: 109 RDRDEQVGQWLSEQGIEFHTFKDQV-------IFEKDEVVKDDGDPYVVYTPYMK--KWK 159
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
R P + D S + L HS + + G E +A+ V +Y
Sbjct: 160 QVFRDT---------PLATFD--SAGQLGNLIAHSRLPNPDLADFGFERSAIP-VPDYDM 207
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
L+ Y++ RN + +++ P L G+IS R ++ + +++ T+W
Sbjct: 208 GGKLIDAYEDNRN-YPAREGTSRLGPHLRFGTISIR------QALGKALESSNETFWN-- 258
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WR++F I + ++ W D+ FE WR+G TG+ L+DA M++L+
Sbjct: 259 ELIWREFFMQILWHFPRTVHEAFRKEYDRIAWRNDESEFEKWREGRTGFALVDAGMRQLN 318
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
+G+M NR R + SFL + + IDWR G +F LLDY+ SN GNW + AG G D
Sbjct: 319 ASGYMHNRVRMLTASFLCKHLLIDWRWGEAYFAEKLLDYEMASNVGNWQWAAGSGVDAAP 378
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQ 521
R F+ Q +D++ Y+ W+P+
Sbjct: 379 YFRIFNPMTQVDKFDKDKSYIREWIPE 405
>gi|359782589|ref|ZP_09285809.1| deoxyribodipyrimidine photolyase [Pseudomonas psychrotolerans L19]
gi|359369409|gb|EHK69980.1| deoxyribodipyrimidine photolyase [Pseudomonas psychrotolerans L19]
Length = 473
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 132/470 (28%), Positives = 209/470 (44%), Gaps = 33/470 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR DLR LD+ AL A + +V V+ + P Q A++ F + L
Sbjct: 4 LVWFRTDLRTLDHPALHAATEQGPVV-AVFLLSPAQWQEH------DEAAVKVDFWLRNL 56
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPS----LAKSFGAHAVYAQKETCSEELNVERLVRK 199
A+L K L + G+ LL+R + E P LA+ G ++ E E + V +
Sbjct: 57 AELGKTLGSLGIPLLVRSAERWEQAPQVLLELARELGVEHLHFNDEYGVNEAARDDAVAE 116
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+ L T H L T++ + V+ FRK+ A+
Sbjct: 117 AFEAAGL--------TTHRYLD----QTLFAPGTVLTKSGGYFKVFGQFRKTCLARLETS 164
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
+P+ ++V +P P K + + GE AAL R+ + D
Sbjct: 165 LPTLLPAPNKQKKNLVQADDLPTSVAGFAAIPAEVKQL-WPAGEEAALQRLQAFI--HDD 221
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS---TYWVLFE 376
L+ Y + R+ P +++ S +L +G ++PR + ++ S W+ E
Sbjct: 222 LEDYHQARDIPSEPG-TSQLSAYLNAGVLTPRQCLQAAVRANDGLLSGGSQGAATWIT-E 279
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKL-EYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
L+WR+++R + + Y H R L W D + ++W+ G TG P+IDA M++L
Sbjct: 280 LLWREFYRHVLVGYPWVSRHQPFNRDLTALPWRDDPEGLDAWQQGRTGIPIIDAAMRQLL 339
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R + FL +++ IDWR G WF L+D D SN G W + A G D
Sbjct: 340 QTGWMHNRMRMLTAMFLCKNLLIDWREGERWFMQHLIDGDLASNNGGWQWSASTGTDSVP 399
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSL 544
R F+ QA D G+YV W+P+L L + + PGG Y+ +V L
Sbjct: 400 YFRVFNPHTQALKIDARGDYVRTWIPELAELKGKAVHTPGGRYLTPLVDL 449
>gi|338738139|ref|YP_004675101.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
gi|337758702|emb|CCB64527.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
Length = 487
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/483 (26%), Positives = 204/483 (42%), Gaps = 41/483 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
IVWFRNDLR+ D+ AL A V+ ++ +D + G K G +L +
Sbjct: 8 ATIVWFRNDLRLCDHPALTAAVKRGGPVIALFVLDDAAA------GCWKLGGASRWWLAK 61
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L ++ RG L++R G E I+ L GA AVY + +E + K+
Sbjct: 62 SLEALSHDIAQRGARLILRRGDTESILKRLVDESGATAVYVTRGYEPWAKGLEEKLHKSF 121
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ K G + +D+ + V+T F + + +
Sbjct: 122 ------------GGSGVVFKRFGGRLLREPEDLRTSSGAAYQVFTPFWRVFRKEFSAPKA 169
Query: 262 IRIPSSFGPPPSVV------DWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEY 313
+ P GP P + DW P P S G+ + GE A R+ +
Sbjct: 170 LAAPRHLGPVPDAIASDDISDWKLAPT-------KPDWSGGLAEAWRPGERGAQLRLKNF 222
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
+ L Y + R+ L + +++ SP LA G ISP + + ++D
Sbjct: 223 V--SEGLSNYDDGRDR-LNAEGTSRLSPHLAFGEISPAACWRAAAEASHQTHSSDGAVET 279
Query: 374 LF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL WR++ + ++ + W++ ++W+ G TGYP++DA M+
Sbjct: 280 FLKELAWREFSYALLFQFPQMPDEPLRDEFAAFPWAKSSANLKAWQRGLTGYPVVDAGMR 339
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TG+M NR R IA SFL + + + W G WF L+D D +N NW + AG G D
Sbjct: 340 ELWATGYMHNRARMIAASFLTKHLLLPWTSGEAWFWDTLVDADLANNAANWQWVAGCGAD 399
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQ 551
R F+ Q + +D +G+YV W+P+L+ LP + P + +LK +
Sbjct: 400 AAPYFRIFNPVLQGEKFDPDGDYVRRWVPELQRLPSADIHKP---WAADATTLKRAGVAI 456
Query: 552 NRN 554
+N
Sbjct: 457 GKN 459
>gi|384248771|gb|EIE22254.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Coccomyxa
subellipsoidea C-169]
Length = 482
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/456 (27%), Positives = 211/456 (46%), Gaps = 34/456 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+I+WFR LR+ DN +LL A + + PV+ +DP + G R FL+E
Sbjct: 10 SILWFRKGLRLHDNPSLLAAIKGATHLYPVFVLDP------WFLKPDVVGVNRLNFLLES 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DLR +L RG NLL+ G P++++P + K + + + +T + + Q
Sbjct: 64 LTDLRSSLQARGSNLLVLRGNPQDVLPRVWKDWNITRLCFEADTEDYAEERDTKITAAAQ 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSS-LPDVYTHFRKSIEAKCTVRGC 261
+ + S +H T+Y D+ + P Y F K+I A
Sbjct: 124 EAGIEVIS---CVSH---------TLYDTSDVVAKNGGKAPLTYKGFEKAITALGPPPAP 171
Query: 262 IRIPSSFGPPPSVVDWG------SVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+ P + PP + G SVP + +L + + S ++ GGE+ AL R+ E
Sbjct: 172 VEDPPAKLPPLAADSKGTDSETTSVPSLRELG-YPDEASTDIK--GGETEALARLAEQLS 228
Query: 316 KKDLLKVYKETRNE---MLGPDYSTKFSPWLASGSISPRYIYEEV-KSYERERVANDSTY 371
K + +++ + + + P +T SP L G +SPR YE + + Y+ ++ +
Sbjct: 229 DKGWVAAFEKPKGDPTAFIKPA-TTVLSPHLKFGCLSPRLFYEALQRVYKEKKEHSKPPV 287
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
+L +L+WR+++ + N G P + W + + + +W + TGYP IDA M
Sbjct: 288 SLLGQLLWREFYYVAAAHTPNYHRMEGNPICKQIPWDNNAEFYRAWEESRTGYPWIDAIM 347
Query: 432 KELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
+L TG+M + R FL R D+ + W G + F+ L+D DP N GNW + +
Sbjct: 348 AQLRRTGWMHHLARHCVACFLTRGDLYVSWEKGRDTFDRLLIDGDPSLNSGNWMWLSASS 407
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+ R +S + YD EG+YV ++LP LK P
Sbjct: 408 FFYQYFRVYSPITYGKKYDPEGKYVKHFLPILKDYP 443
>gi|157369495|ref|YP_001477484.1| deoxyribodipyrimidine photolyase [Serratia proteamaculans 568]
gi|157321259|gb|ABV40356.1| Deoxyribodipyrimidine photo-lyase [Serratia proteamaculans 568]
Length = 476
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 131/455 (28%), Positives = 215/455 (47%), Gaps = 41/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN+AL A D VL V+ P+ Q H P+ A F+
Sbjct: 5 LVWLRNDLRITDNKALHAACSDPDARVLAVFIATPQ--QWRQHEMAPRQVA----FIHAN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA-----VYAQKETCSEELNVERLV 197
L +++ L RG+ L ++ A Y ++ +E +RL
Sbjct: 59 LLQVQQALAERGIPLGYHQCDDFAAAVDWLTAYCAQQQVDRLFYNRQYEINERQRDQRLE 118
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
++ Q + QS D S P + G+ MY +YT FRK+ +
Sbjct: 119 QRLSGQAI--CQSFDDSLLLPPGSVQTGSGEMYK-------------IYTPFRKAFIQRL 163
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLE-LHSPKVSKGMRFVGGESAALGRVNEYFW 315
T +P+ P P G++P+ E P F GE AAL R+ +
Sbjct: 164 TESDIQSLPA---PKPRAG--GALPVTAIPEAFDYPPAEPNEDFPAGEEAALQRLRSFC- 217
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST--YWV 373
++ ++ Y E R+ + ++ SP+LA G +SPR + +++ + + N + +
Sbjct: 218 -REQVQDYLEQRD-LPAIAGTSSLSPYLAIGVLSPRQCFNRLRAECPQLLENHDSGAFGW 275
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + + Y H + +W +Q+L ++W+ G TGYP++DA M+
Sbjct: 276 LNELIWREFYRHLMVAYPALCKHRPFIEWTDRVRWQDNQELLQAWQQGVTGYPIVDAAMR 335
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I+ SFLV+D+ IDWR G +F + LLD D +N G W + A G D
Sbjct: 336 QLNTTGWMHNRLRMISASFLVKDLLIDWRAGESYFMSQLLDGDLAANNGGWQWAASTGTD 395
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D +G ++ WL +L +P
Sbjct: 396 AAPYFRIFNPTTQGERFDPQGTFIRKWLSELADVP 430
>gi|397656763|ref|YP_006497465.1| Deoxyribodipyrimidine photolyase [Klebsiella oxytoca E718]
gi|394345309|gb|AFN31430.1| Deoxyribodipyrimidine photolyase [Klebsiella oxytoca E718]
Length = 482
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 125/473 (26%), Positives = 218/473 (46%), Gaps = 40/473 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A D VL ++ P Q H P+ A F++
Sbjct: 5 LVWFRADLRIHDNLALAAACRDPHAEVLGLFIATP--GQWRQHGMAPRQAA----FMVSH 58
Query: 143 LADLRKNLMNRGLNLLIRHGK----PEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L+ L +G+ L I H ++ S+ + ++ + E + V
Sbjct: 59 LHSLQAALAEKGIPLQIAHAADFTASVALLASICRQRQVTHLFYNYQYEINERQRDAAVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
K L +V + Q D S P ++ G+ + PF ++ + +K++ +C
Sbjct: 119 KTLAEV--TCQGFDDSVLLPPGSVLTGSREMYKVFTPFKNAFI----RRLQKALP-ECVA 171
Query: 259 RGCIRIPSSFGPPPSV-VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+R V +D+ P +L F E +A+ R+ + +K
Sbjct: 172 APKVRAGGPIAAASEVKIDYPQTPFDSEL------------FAADEKSAIARLRGFCQQK 219
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
E + E+ + +++ SP LA G++SPR ++ + + ++ L EL
Sbjct: 220 ---AADYEQQRELPAIEGTSRLSPCLAVGALSPRQCLHRLRVEQPRALDGEAGSVWLNEL 276
Query: 378 MWRDYFRFISLKYGNSLFHLGGPR---KLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
+WR+++R + + Y N G P W D+ ++W+ G TG+P++DA M++L
Sbjct: 277 IWREFYRHLMVYYPN--LCKGRPFIDWTDNVAWLDDKSALQAWQRGQTGFPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR+G +F L+D D +N G W + A G D
Sbjct: 335 NATGWMHNRLRMIVASFLVKDLRIDWRLGERYFIEQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKH 546
R F+ Q + +D+ G+++ WLP+L +P++ + P +Q V+L +
Sbjct: 395 PYFRIFNPTTQGERFDKAGQFIRQWLPELAGVPEKAVHQPWLWAEKQGVTLDY 447
>gi|261344548|ref|ZP_05972192.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
gi|282567462|gb|EFB72997.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
Length = 478
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 223/460 (48%), Gaps = 49/460 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLRV DN+AL A DS V+ V+ P Q H P+ Q LIE
Sbjct: 6 LVWFRGDLRVTDNKALSSACQDSDSQVIGVFIATP--DQWASHGVSPRQITFMHQNLIE- 62
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L++ L RG+ L+ + + A S YA+++ V+ L Q
Sbjct: 63 ---LQRALAERGIPLVC------HTVSTFADSAKWLLEYAKQQ------QVKALFFN--Q 105
Query: 203 QVVLSSQSNDK-STNHPQLKLIWGTTMYHLDD--------IPFDHSSLPDVYTHFRKSIE 253
Q L+ + D+ T H Q ++ DD + + VYT FR++
Sbjct: 106 QYELNERQRDQWVTQHAQ-----SLNVFSYDDAVLISPGVVQTQKGEMYQVYTPFRRAFL 160
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++ + +P+ ++ S PL H+P V +F+ GE AAL ++ +
Sbjct: 161 SQLMMTDYRSLPAPKPRSEPIIIDNSQPLFP----HTP-VEIAPQFIAGEQAALAKLRLF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV---ANDST 370
++ ++ Y+ R ++ D +++ SP+LA G++SPR + + E + +
Sbjct: 216 C--RERVQDYQRDR-DIPSIDGTSQLSPYLAIGTLSPRQCVNRLLA-ENPHIFDSPDSGG 271
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPLIDA 429
+ L EL+WR+++ + + + H ++ +W+ D+ F +W+ G TGYP++DA
Sbjct: 272 FSWLNELVWREFYSHLLVAFPRLCRHQPFIEWTQHIQWNPDEDAFTAWKTGQTGYPIVDA 331
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D +N G W + A
Sbjct: 332 AMRQLNQTGWMHNRLRMIVASFLVKDLLIDWRKGEHYFISQLIDGTLAANNGGWQWSAST 391
Query: 490 GNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D R F+ Q + +D +G ++ WLP+L+ +P++
Sbjct: 392 GVDASPWFRIFNPTTQGKKFDPQGTFIHKWLPELRNVPEQ 431
>gi|448357813|ref|ZP_21546508.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
gi|445648121|gb|ELZ01083.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
Length = 466
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/451 (26%), Positives = 201/451 (44%), Gaps = 34/451 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR DN +L A ++ V+P + DP + P R F++E
Sbjct: 1 MTVHWHRRDLRAADNRSLSAAAETGS-VIPAFVFDP----AVLEYASPP----RVAFMLE 51
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L++LR RG +L++ G P + +P +A+ A +V ++ + VR+ L
Sbjct: 52 SLSELRAWYRERGSDLVVATGDPRDELPRIAREHDAESVSWNRDYSGLASKRDEAVREAL 111
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
L + S D + ++ I VY++F K +
Sbjct: 112 TDAGLEATSVDDAL------------LFEPGSITTQQGETYAVYSYFWKKWRDR---EKE 156
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+P+ G + V +P E L P+ + G AA R+ + D +
Sbjct: 157 SPVPAPNGEQLASVSGDPLPSQEALGFDEPEANIPD---TGMEAARRRLETFC--ADPIY 211
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV---KSYERERVANDSTYWVLFELM 378
Y + R++ D ++ SP L G+I R +YE V KS + DS +L
Sbjct: 212 RYADQRDDPAA-DATSGLSPHLKWGTIGIRTVYEAVERAKSEAPDDATADSCEEFESQLA 270
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR ++ + +++ + +W D ++W+DG TGYP++DA M++L
Sbjct: 271 WRAFYAHVLATNPHTVTTNYRSYENPIQWRTDAAALQAWKDGTTGYPIVDAGMRQLRAEA 330
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
FM NR R I SFL +D+ +DWR G WF L D+D S+ G W + +G G D + R
Sbjct: 331 FMHNRLRMIVASFLTKDLLLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFR 390
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
F+ Q + +D + EY+ ++P+L+ +P E
Sbjct: 391 IFNPMTQGERHDPDAEYIRTYVPELEDVPAE 421
>gi|86607703|ref|YP_476465.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556245|gb|ABD01202.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 487
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 134/451 (29%), Positives = 206/451 (45%), Gaps = 41/451 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++W R DLR+ DN AL +A S V+PV+ DP+ + + R FL++ L
Sbjct: 6 LLWHRRDLRLGDNTALHEAAQRSSQVVPVFIFDPQMLRRS------DMAPARVAFLLQAL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L++ G+ L+ R G P + LA GA AV+ + L E V+ +L
Sbjct: 60 QELQERYAQMGIPLIWRLGDPSVELRCLAIDLGARAVFWNADGEPFALQQESRVQASLAA 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF--DHSSLP--DVYTHFRKSIEAKCTVR 259
+ S S H +++ + PF +SLP D Y K ++ ++
Sbjct: 120 AGIQSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWASLPKPDPYP-IPKGLQPVSGLK 178
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
P P++ D G V R AA + E F +
Sbjct: 179 A--------QPLPTLADLGFV--------------CDQRIPAAGEAAAQALLEDFCQGLR 216
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWVLFE 376
+ Y+ RN P S SP L G+I R +++ EV++ R + A S E
Sbjct: 217 ILDYERARNFPAEPGTSL-LSPHLCWGTIGIRQVWQATREVEAEVRSQEAESSLQTWRQE 275
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
L WR++++ + + + G R+ +W Q F++W G TGYP++DA M++L
Sbjct: 276 LCWREFYKHVLAHWPH--VETGAYRRAFDALEWDNRQDWFQAWCTGQTGYPIVDAAMRQL 333
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFL +D+ IDWR G +F L+D D +N G W + A VG DP+
Sbjct: 334 NETGWMHNRCRMIVASFLTKDLLIDWRWGERYFMQKLVDGDLAANNGGWQWSASVGTDPK 393
Query: 495 EDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R F+ QA YD EGEY+ +LP+L L
Sbjct: 394 PLRIFNPATQAARYDPEGEYIRRYLPELARL 424
>gi|398826896|ref|ZP_10585124.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
gi|398219708|gb|EJN06173.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
Length = 508
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 130/458 (28%), Positives = 203/458 (44%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR+DLR+ D+ AL A + V+ +Y +D + +L + L
Sbjct: 37 IVWFRDDLRLSDHPALHAAAKTGAPVVCLYVLDDAAGRAPG--------GAARWWLAQSL 88
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L + RG +L++R G ++ + + GA AVY + VER + L +
Sbjct: 89 RTLGAEIAARGGSLILRKGPAARVVAEVVRESGASAVYWNGIAQAPHQAVERQLEAALAK 148
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + SQS G + I V+T F + + A +
Sbjct: 149 LGVDSQS------------FLGDLLVPPSAIRNKEGRGLRVFTPFWRRVLALGDPPKPLP 196
Query: 264 IPSSFGPPPSVVDWGSVPLIEQ--LELHSPKVSKGMR--FVGGESAALGRVNEYFWKKDL 319
P P++ +E LE +P + G+R + GE++A R+ ++ K +
Sbjct: 197 APKQLRAGPNIAS----DTLESWALEPTTPDWAGGLRESWTPGEASARARLRDFL--KTI 250
Query: 320 LKVYKETRNEMLGPDY--STKFSPWLASGSISPRYIYEEVKSYERERVA-NDSTYWVLFE 376
+ Y R+ PD +++ SP L G +SPR ++ + E A L E
Sbjct: 251 ARSYVGDRDR---PDREGTSRLSPHLRFGELSPRQVFHAARFAAAENPALGPGIEKFLSE 307
Query: 377 LMWRDYFRFI-----SLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
L WR++ R + L N + G + W D K +W+ G TGYP++DA +
Sbjct: 308 LGWREFCRHLLHDHPGLATENLQANFDG-----FPWKGDTKALTAWQRGATGYPIVDAGL 362
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TG M NR R + SFLV+ + IDWR G WF L+D D SN NW + AG G
Sbjct: 363 RELWHTGVMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNPANWQWVAGCGA 422
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
D R F+ Q + +D +G YV W+P+LK LP +
Sbjct: 423 DAAPYFRVFNPILQGEKFDPDGTYVRRWVPELKDLPAK 460
>gi|389695632|ref|ZP_10183274.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
gi|388584438|gb|EIM24733.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
Length = 492
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 135/461 (29%), Positives = 217/461 (47%), Gaps = 38/461 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR+D R+ DN AL A + VL + P GA R +L L
Sbjct: 10 LVWFRDDHRLADNPALAAAAATGSQVLCFAVIGGSDDLR------PLGGAAR-WWLHGSL 62
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L ++L G +L + G ++ +A+ GA A++ + + E+ ++ V+K L
Sbjct: 63 RALGESLEQAGASLALFEGPAPSVVERVARETGASAIFWNRRYGAAEIALDTAVKKRLTD 122
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA---KCTVRG 260
+ + S + H ++ + PF V+T + +++ K +
Sbjct: 123 SGIKAHSFNGRLLHEPWDIV------NQAGRPFQ------VFTPYLRTVMTRGLKAALAP 170
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIE-QLELHSPKVSKGMR--FVGGESAALGRVNEYFWKK 317
RIP P S + ++PL E LE SP + G+R + GE AA + K
Sbjct: 171 PKRIPGGIWP--SSLLASTIPLEELGLEPSSPDWAGGLRTAWRPGEEAARKSFRHFLSKG 228
Query: 318 DLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKS--YERERVANDSTYWV 373
L+ Y E R+ ++G +++ SP L G ISPR I+ V + E +A D+ +
Sbjct: 229 --LRGYAENRDRPSLIG---TSRLSPHLRFGEISPRQIWHAVTAQVAEHPSLARDAEKY- 282
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
L E++WRD+ + + + R + W D K ++WR G TGYP++DA M++
Sbjct: 283 LSEIVWRDFSHQLLHFHPHLPVRSHSSRFDAFPWIDDPKTLKAWRRGRTGYPIVDAGMRQ 342
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L TG+M NR R I SFLV+ + DWR G WF L+D DP +N +W + AG G D
Sbjct: 343 LWQTGWMHNRVRMITASFLVKHLLTDWRKGEAWFWDTLVDADPANNAFSWQWVAGSGPDS 402
Query: 494 RE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +D +G+YV ++P+L LP + P
Sbjct: 403 APFHRIFNPVTQGEKFDPDGDYVRTFVPELAGLPSTFLHHP 443
>gi|294637450|ref|ZP_06715740.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685]
gi|451966075|ref|ZP_21919330.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda NBRC 105688]
gi|291089391|gb|EFE21952.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685]
gi|451315324|dbj|GAC64692.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda NBRC 105688]
Length = 477
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 131/487 (26%), Positives = 211/487 (43%), Gaps = 39/487 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLRV DN AL A D VL +Y PR Q +AQF+ +
Sbjct: 5 VVWLRNDLRVTDNRALHAACADPDARVLALYVATPRQWQAQ------DMAPRQAQFIWQN 58
Query: 143 LADLRKNLMNRGLNL----LIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L LR L R + L + + + + A A++ ++ ELN R
Sbjct: 59 LQCLRLELAARHIALHGLSVADYAAQRQAVAHFCAQHQATALFFNRQY---ELNERRRDE 115
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ + D + P ++ PF H+ L + + A
Sbjct: 116 ALCATLSIPCHGFDDALLLPPGAVLTAAGQMFKVFTPFKHAFLQALGQQDNAPLPAP--- 172
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
R PPP ++ + + V + F GE+AA R+ +F + D
Sbjct: 173 ---TRRAYPCAPPP---------VLPTFDYPAATVDATL-FPAGEAAAQARL-AHFCRTD 218
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS--YERERVANDSTYWVLFE 376
L R + ++ SP+L G +SPR ++S + A+ L E
Sbjct: 219 LATY--AVRRDFPAQAGTSLLSPYLTLGVVSPRQCLAVLQSGMLDSPNAASGGGAAWLNE 276
Query: 377 LMWRDYFRFISLKYGNSLFHLGG-PRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
L+WR+++R + + + + H P +W D++ W+ G TG+PLIDA M++L+
Sbjct: 277 LIWREFYRHLLVAWPDLCRHRPFLPWTARIRWRDDEQGLRRWQQGMTGFPLIDAAMRQLN 336
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
G+M NR R + SFLV+D+ IDWR+G +F + L+D D +N G W + A G D
Sbjct: 337 HCGWMHNRLRMLTASFLVKDLLIDWRLGERYFLSQLIDGDLAANNGGWQWAASTGCDAAP 396
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGN--INQN 552
R F+ Q Q YD +G+++ WLP LK +P + P + Q L + + ++
Sbjct: 397 YFRIFNPTTQGQRYDAQGQFIRRWLPALKDVPDSEIHHPQRWALRQRRVLDYPDPMVDHA 456
Query: 553 RNQNDSL 559
R + D+L
Sbjct: 457 RARQDTL 463
>gi|297585056|ref|YP_003700836.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
gi|297143513|gb|ADI00271.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
Length = 474
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 211/462 (45%), Gaps = 43/462 (9%)
Query: 82 VAIVWFRNDLRVLD----NEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQ 137
+ +VWFRNDLR+ D +EAL A D +L V+ + H H R
Sbjct: 5 LTVVWFRNDLRLNDHPAIDEALTFAEDHDTKILCVFHI---HDDLFSHLH------TRHD 55
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF-GAHAVYAQKETCSEELNVERL 196
+ + L +L +R + + +G+ E SL K + G AV+A K+ S +R
Sbjct: 56 YFFQTLRHFSDDLKSRNIAIRFLYGEVTEAFASLLKEYSGVQAVFASKDYTSFATERDRT 115
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
VR L + N + T L +++ D P+ VYT + K K
Sbjct: 116 VR------TLFEERNIRFTLTVSNHLQEPSSIMKDDGTPYK------VYTPYSKQW-LKK 162
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVG-GESAALGRVNEYFW 315
VRG + G + + + + +L S + GE A R+ ++
Sbjct: 163 PVRGLLA-----GHEKKLRERTCEVAMNRGKLDDFLASSDRTWQALGEDHAHERLEQFV- 216
Query: 316 KKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
D L Y E+R+ + G +++ SP+L +G +S +Y +Y +D+
Sbjct: 217 -TDRLTHYGESRDFPAVAG---TSRLSPYLKTGVLSVAQVYH--AAYPLFEKGDDAAVTF 270
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
+ EL WRD++ I + N + W++D +L E W+ G TG+PLIDA M++
Sbjct: 271 IKELAWRDFYTMIHYHFENLRNQEFQEKYRTLSWNEDDELLEYWKQGQTGFPLIDAAMRQ 330
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+M NR R SFL +D IDWR G +F L+DYD SN G W + A VG D
Sbjct: 331 LNTTGWMHNRLRMATASFLTKDYRIDWREGERYFAEKLIDYDEASNTGGWQWAASVGTDA 390
Query: 494 RED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPG 534
R F+ +Q++ +D EG ++ ++P+LK +P + P
Sbjct: 391 VPYFRVFNPVRQSKRFDPEGTFIRQYVPELKDVPASSIHEPA 432
>gi|423101950|ref|ZP_17089652.1| deoxyribodipyrimidine photo-lyase [Klebsiella oxytoca 10-5242]
gi|376390776|gb|EHT03459.1| deoxyribodipyrimidine photo-lyase [Klebsiella oxytoca 10-5242]
Length = 482
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/474 (26%), Positives = 218/474 (45%), Gaps = 42/474 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A D VL ++ P Q H P+ A F++
Sbjct: 5 LVWFRADLRIHDNLALAAACRDPHAEVLGLFIATP--GQWRQHGMAPRQAA----FMVSH 58
Query: 143 LADLRKNLMNRGLNLLIRHGK----PEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L+ L +G+ L I H ++ S+ + ++ + E + V
Sbjct: 59 LHSLQAALAEKGIPLQIEHAADFTASVALLASICRQRQVTHLFYNYQYEINERQRDAAVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
K L +V + Q D S P ++ G+ MY V+T F+ +
Sbjct: 119 KTLAEV--TCQGFDDSVLLPPGSVLTGSREMYK-------------VFTPFKNAF----- 158
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFWK 316
+R F P V G + ++++ P+ F E +A+ R+ + +
Sbjct: 159 IRRLQEALPEFVAAPKVRAGGPIAAASEVKIDYPQTPFDSELFAADEKSAIARLRGFCQQ 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
K E + ++ + +++ SP LA G++SPR ++ + + ++ L E
Sbjct: 219 K---AADYEQQRDLPAIEGTSRLSPCLAVGALSPRQCLHRLQVEQPRALDGEAGSVWLNE 275
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPR---KLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
L+WR+++R + + Y N G P W D+ ++W+ G TG+P++DA M++
Sbjct: 276 LIWREFYRHLMVYYPN--LCKGRPFIDWTDNVAWLDDKSALQAWQRGQTGFPIVDAAMRQ 333
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+M NR R I SFLV+D+ IDWR+G +F L+D D +N G W + A G D
Sbjct: 334 LNATGWMHNRLRMIVASFLVKDLRIDWRLGERYFIEQLIDGDLAANNGGWQWAASTGTDA 393
Query: 494 RED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKH 546
R F+ Q + +D+ G+++ WLP+L +P++ + P +Q V+L +
Sbjct: 394 APYFRIFNPTTQGERFDKAGQFIRQWLPELAGVPEKAVHQPWLWAEKQGVTLDY 447
>gi|307110914|gb|EFN59149.1| hypothetical protein CHLNCDRAFT_56756 [Chlorella variabilis]
Length = 444
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 155/332 (46%), Gaps = 35/332 (10%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQF 138
G+ IVWFR DLR+ DNEAL +A +LPVYC DPR + G+ KTG RAQF
Sbjct: 106 GRRPGIVWFRGDLRLHDNEALARAQAECSSLLPVYCFDPREYGKSPQ-GYDKTGPYRAQF 164
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L E +ADLR L G L++R G+PEE++ L + GA AVY E E+L E
Sbjct: 165 LAEAVADLRAALRAAGSELVVRVGRPEEVVGELVRRTGAGAVYCHTEVAYEDLRAE---- 220
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
++ +L+ W T+ HLDD+PF LP + FR+ I V
Sbjct: 221 --------AAVRAAAEAGGARLRAYWANTLCHLDDLPFSLDQLPQNFDKFREQI-GGVAV 271
Query: 259 RGCIRIPSSFG--PPPSVVDWGSVPLIEQLELH-------SPKVSKGMRFVGGESAALGR 309
R + P P VD G +P +EQL L + + +G GGE AL R
Sbjct: 272 RAALPAPQELHGLPLGGRVDPGDIPTLEQLGLQPLPAAAATGSIGEGGSPRGGEGEAL-R 330
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK----------- 358
+ F + G ++S +PWLA+G +SPR + E+ +
Sbjct: 331 QLQRFVAAAGGQAAAGPVAAAHGSNFSANIAPWLATGCLSPRRMLEDARRALAAPTAAGA 390
Query: 359 SYERERVANDSTYWVLFELMWRDYFRFISLKY 390
+ R WV FEL WRD+FR +S KY
Sbjct: 391 TPAASRPLQAPLEWVRFELYWRDFFRLLSRKY 422
>gi|402839644|ref|ZP_10888128.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. OBRC7]
gi|402287570|gb|EJU36009.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. OBRC7]
Length = 482
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/475 (26%), Positives = 219/475 (46%), Gaps = 44/475 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A D VL ++ P Q H P+ A F++
Sbjct: 5 LVWFRADLRIHDNLALAAACRDPHAEVLGLFIATP--GQWRQHGMAPRQAA----FMVSH 58
Query: 143 LADLRKNLMNRGLNLLIRHGK----PEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L+ L +G+ L I H ++ S+ + ++ + E + +V
Sbjct: 59 LHSLQAALAEKGIPLQIEHAADFTASVALLASICRQRQVTHLFYNYQYEINERQRDAVVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA--KC 256
K L +V + Q D S P ++ G+ + PF ++ + R+ EA +C
Sbjct: 119 KTLAEV--TCQGFDDSVLLPPGSVLTGSREMYKVFTPFKNAFI-------RRLQEALPEC 169
Query: 257 TVRGCIRIPSSFGPPPSV-VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+R V +D+ P +L F E +A+ R+ +
Sbjct: 170 VAAPKVRAGGPIAAASEVKIDYPQTPFDSEL------------FAADEKSAIARLRGFCQ 217
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+K E + ++ + +++ SP LA G++SPR ++ + + ++ L
Sbjct: 218 QK---AADYEQQRDLPAIEGTSRLSPCLAVGALSPRQCLHRLQVEQPRALDGEAGSVWLN 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPR---KLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + + Y N G P W D+ ++W+ G TG+P++DA M+
Sbjct: 275 ELIWREFYRHLMVYYPN--LCKGRPFIDWTDNVAWLDDKSALQAWQRGQTGFPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR+G +F L+D D +N G W + A G D
Sbjct: 333 QLNATGWMHNRLRMIVASFLVKDLRIDWRLGERYFIEQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKH 546
R F+ Q + +D+ G+++ WLP+L +P++ + P +Q V+L +
Sbjct: 393 AAPYFRIFNPTTQGERFDKAGQFIRQWLPELAGVPEKAVHQPWLWAEKQGVTLDY 447
>gi|423128121|ref|ZP_17115800.1| deoxyribodipyrimidine photo-lyase [Klebsiella oxytoca 10-5250]
gi|376395160|gb|EHT07810.1| deoxyribodipyrimidine photo-lyase [Klebsiella oxytoca 10-5250]
Length = 480
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 125/461 (27%), Positives = 210/461 (45%), Gaps = 42/461 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A D VL ++ P Q H A +A F++
Sbjct: 5 LVWFRADLRMHDNLALAAACRDPHARVLGLFIATP--GQWRQH----GMAARQAAFIVSH 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA-----HAVYAQKETCSEELNVERLV 197
L L+ L +G+ L + + L SF H Y + +E + V
Sbjct: 59 LHSLQAALAEKGIPLHVEQAEDFAASVKLLASFCGQQQVTHLFYNYQYEINER-QRDAAV 117
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
KNL V + Q D S P ++ G + PF ++ L + + + A
Sbjct: 118 EKNLTGV--TCQGFDDSVLLPPGSVLTGNREMYKVFTPFKNAFLRRLQEALPECVAAP-K 174
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFWK 316
R C G + + +++ P+ G F E +A+ R+ + +
Sbjct: 175 ARAC----------------GPIAAVSDVKIDYPQTPFDGELFAADEKSAIARLRGFCQQ 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
K E + ++ + +++ SP LA G++SPR + + + ++ L E
Sbjct: 219 K---AADYEQQRDLPAVEGTSRLSPCLAVGALSPRQCLHRLLIEQPRALDGEAGAVWLNE 275
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPR---KLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
L+WR+++R + + Y N G P W D+ F++W+ G TG+P++DA M++
Sbjct: 276 LIWREFYRHLMVYYPN--LCKGRPFIDWTDNVAWLDDKSAFQAWQRGQTGFPIVDAAMRQ 333
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+M NR R I SFLV+D+ IDWR+G +F L+D D +N G W + A G D
Sbjct: 334 LNATGWMHNRLRMIVASFLVKDLRIDWRLGERYFIEQLIDGDLAANNGGWQWAASTGTDA 393
Query: 494 RED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +D+ G ++ +WLP+L +P++ + P
Sbjct: 394 APYFRIFNPTTQGERFDKAGRFIRHWLPELAGVPEKAVHQP 434
>gi|227829309|ref|YP_002831088.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
gi|284996667|ref|YP_003418434.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
gi|227455756|gb|ACP34443.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
gi|284444562|gb|ADB86064.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
Length = 433
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 211/460 (45%), Gaps = 81/460 (17%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + FR DLR+ DN L+KA + E V+P + +DPR + F+I
Sbjct: 2 LCLFIFRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEY----KSEFAINFMIN 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELNVERL---- 196
L +L L RG L + G EE+I +L K AVY ++ T ++ ER+
Sbjct: 58 SLNELNDELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYC 115
Query: 197 -----VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
+ K+ + +L+S+++ K+ + TT Y++ + + YT++ K+
Sbjct: 116 ADTGKIMKSFEDYLLTSKNDFKNYRN-------FTTFYNVVKNKQIRKPVQNNYTNYYKN 168
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
S G ++ EL + +G R G + R
Sbjct: 169 ---------------SLG--------------DEHELPPRQGERGGRKEGIKLIERARQI 199
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
Y R + + D T SP L G++S R +Y + +
Sbjct: 200 NY------------DRKDFVAEDNRTFLSPHLKFGTLSIREVYYSLLDSQA--------- 238
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPLID 428
++ +L WRD++ ++ Y +FH P K EY +W +++LF++W +G TGYP+ID
Sbjct: 239 -IIRQLYWRDFYTLLAY-YNERVFH--EPLKREYNCIEWENNERLFQAWLEGKTGYPIID 294
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG M NR R + FLV+ + IDWR+G ++F + L+DYDP N GNW + A
Sbjct: 295 AGMRQLNRTGDMPNRVRMLTAFFLVKVLIIDWRIGEKYFASKLIDYDPSVNNGNWQWIAS 354
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
VG D R F KQ YD E +Y+ W+ +L++ E
Sbjct: 355 VGTDYIF-RVFDPWKQQVTYDPEAKYIKRWVDELESYDAE 393
>gi|254292413|ref|YP_003058436.1| deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
gi|254040944|gb|ACT57739.1| Deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
Length = 475
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/463 (27%), Positives = 218/463 (47%), Gaps = 45/463 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ WFR DLR+ DN AL A S + ++ ++ +Q P A +A +L E L
Sbjct: 3 LCWFRQDLRLSDNPALRSAL-SDNSAIALFILEETDTQR------PMGSACKA-WLHESL 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L+ +L G+ L++R G +IIP L VY + +++ ++R + ++L++
Sbjct: 55 IRLQSDLEAIGVPLVLRRGDARDIIPKLTSDLKIDNVYWNRRYDPKDVAIDRALMEHLKE 114
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKSIEAKCTVRGCI 262
++ +S ++ +I + P V++ F K+ + +
Sbjct: 115 EGVNVESFK------------ANVLFEPWEIKSAGAGTPYKVFSPFWKAALKEGVPAQSL 162
Query: 263 RIPSSFGPPP--------SVVDWGSVPLIEQLELHSPKVSKGM--RFVGGESAALGRVNE 312
+P+ P ++ DW +P SP + G +V GE+ A R E
Sbjct: 163 AVPTKIQSKPQLDQLPFDNLEDWDLMPA-------SPNWTNGFWDVWVPGEAGAFERFKE 215
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
+ + LK Y + R ++ ++++ SP L G ISP I+ V ++ V D Y
Sbjct: 216 FL--EINLKGYSQNR-DVPSKNHTSCLSPHLRFGEISPLQIWHGVHAHSGGEVDKDG-YK 271
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANM 431
L E+ WR++ I L Y ++L + + W QD+ +W+ G TGYPL+DA M
Sbjct: 272 FLAEVGWREFSHSI-LFYADNLSQTNWKSDFDGFAWVQDENGLTAWQSGQTGYPLVDAGM 330
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TG++ NR R + SFL++ + IDWR G WF L+D P +N +W + AG G
Sbjct: 331 RELWQTGYIHNRVRMVVASFLIKHLRIDWREGEAWFWDTLVDACPANNPASWQWVAGSGA 390
Query: 492 DPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D R F+ Q++ +D +G Y+ W+P+L L + + P
Sbjct: 391 DASPFFRIFNPIMQSEKFDPKGSYIRKWVPELANLDNKSIHTP 433
>gi|448639842|ref|ZP_21676990.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
gi|445762369|gb|EMA13590.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
Length = 465
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/454 (26%), Positives = 209/454 (46%), Gaps = 49/454 (10%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
W R DLR DN A L A S+ V+PV+ D + H G P R F+++ L
Sbjct: 5 WHRRDLRATDN-AGLAAATPSDPVVPVFIFD---TAVLDHAGPP-----RVAFMLDALDS 55
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LR+ ++G +L++ G P ++P LA GA V K+ + VR+ L
Sbjct: 56 LREWYRDKGSDLVVAEGDPTSVLPELAAQHGAEKVTWGKDYSGLARERDAAVRQALDDAD 115
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
++ ++ + H ++ TT D P+ V+T+F + +
Sbjct: 116 VAREAVQNAVLHEPGEI---TTN---DGDPYS------VFTYFGRKWHDR---------- 153
Query: 266 SSFGP--PPSV-----VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
GP PPS VD ++P + L P+ G A ++++ +
Sbjct: 154 EKAGPYDPPSADTLADVDGDALPTLADLGFEEPEADVP---AAGTEEARALLDDFLDEN- 209
Query: 319 LLKVYK-ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN--DSTYWVLF 375
VY+ E R + + +++ S L G+I R +Y+ ++ + + DS
Sbjct: 210 ---VYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQS 266
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
+L WR+++ + + + + + +W D++L ++W+DG TGYP++DA M++L
Sbjct: 267 QLAWREFYTQVLFAHPHVVSSNYKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLR 326
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
+M NR R I SFL +D+ IDWR G EWF L+D+D ++ G W + A G D +
Sbjct: 327 EEAYMHNRVRMIVASFLTKDLLIDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQP 386
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q ++YD EY+ ++P+L+ E
Sbjct: 387 YFRIFNPMTQGEDYDPNAEYIKEYVPELRDAAPE 420
>gi|229583293|ref|YP_002841692.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
gi|228014009|gb|ACP49770.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
Length = 433
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 211/460 (45%), Gaps = 81/460 (17%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + FR DLR+ DN L+KA + E V+P + +DPR + F+I
Sbjct: 2 LCLFIFRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEY----KSEFAINFMIN 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELNVERL---- 196
L +L L RG L + G EE+I +L K AVY ++ T ++ ER+
Sbjct: 58 SLNELNDELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYC 115
Query: 197 -----VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
+ K+ + +L+S+++ K+ + TT Y++ + + YT++ K+
Sbjct: 116 EDTGKIMKSFEDYLLTSKNDFKNYRN-------FTTFYNVVKNKQIRKPVQNNYTNYYKN 168
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
S G ++ EL + +G R G + R
Sbjct: 169 ---------------SLG--------------DEHELPPRQGERGGRKEGIKLIERARQI 199
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
Y R + + D T SP L G++S R +Y + +
Sbjct: 200 NY------------DRKDFVAEDNRTFLSPHLKFGTLSIREVYYSLLDSQA--------- 238
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPLID 428
++ +L WRD++ ++ Y +FH P K EY +W +++LF++W +G TGYP+ID
Sbjct: 239 -IIRQLYWRDFYTLLAY-YNERVFH--EPLKREYNCIEWENNERLFQAWLEGKTGYPIID 294
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG M NR R + FLV+ + IDWR+G ++F + L+DYDP N GNW + A
Sbjct: 295 AGMRQLNRTGDMPNRVRMLTAFFLVKVLIIDWRIGEKYFASKLIDYDPSVNNGNWQWIAS 354
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
VG D R F KQ YD E +Y+ W+ +L++ E
Sbjct: 355 VGTDYIF-RVFDPWKQQVTYDPEAKYIKRWVDELESYDAE 393
>gi|418529913|ref|ZP_13095840.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni ATCC
11996]
gi|371452969|gb|EHN65994.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni ATCC
11996]
Length = 496
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 132/471 (28%), Positives = 216/471 (45%), Gaps = 44/471 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V ++W R DLR+ DN AL A E + V+ D + P+ R +F+ +
Sbjct: 7 VGLIWLRRDLRLADNAALYHALQQCEKLYCVFVFD-----DSILAALPRADR-RVEFICQ 60
Query: 142 CLADLRKNLMNRG----LNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
L +L L L+ R G P++IIP+LA+ GA AV+ C+++ L
Sbjct: 61 SLTELDAALREAAGRAHTGLITRRGLPQDIIPALARQLGAGAVF-----CNDDDEPAALA 115
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
R L SQ QL L + ++ D++ + S V+T ++ + K
Sbjct: 116 RDAQVARSLKSQG--------QLLLRFKDHRIFARDEVLTQNLSPFSVFTPYKNAWLRKI 167
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSV---PLIEQLEL-HSPKVSKGMRFVGGESAALGRVNE 312
T PS + D P+ +L +P G+R G S A + +
Sbjct: 168 TPFYLSAYPSERNLASKLADLPDTERRPIPSAADLGFAPDTLAGLRLPTGVSGARQLLAD 227
Query: 313 YFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSIS----PRYIYEEVKSYERERVA 366
+ + L YK R+ + GP Y S L G++S R +E + + A
Sbjct: 228 FLPR---LPQYKTARDFPALKGPSY---LSVHLRFGTVSIRELARLAHEAAHNEDWSAAA 281
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKW---SQDQKLFESWRDGCTG 423
+ L EL+WRD++ I + P +W ++ LF +W +G TG
Sbjct: 282 REGAATWLSELIWRDFYFQILAHQPYVVERSFKPAYDAIEWETGAEADALFAAWCEGRTG 341
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YPL+DA M++L+ +G+M NR R + SFLV+D+G+DWR G +F L D+D +N G W
Sbjct: 342 YPLVDAAMRQLNTSGYMHNRLRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGW 401
Query: 484 TYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+ A G D + R F+ Q++ +D +G+++A ++P+L LP + R+ P
Sbjct: 402 QWAASTGCDAQPWFRIFNPVTQSEKFDPDGKFIARYVPELTPLPAKLRHAP 452
>gi|268592334|ref|ZP_06126555.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131]
gi|291312119|gb|EFE52572.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131]
Length = 480
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 136/516 (26%), Positives = 238/516 (46%), Gaps = 75/516 (14%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++WFRNDLRV DN+AL A D + V+ ++ P+ Q + F+ +
Sbjct: 9 LIWFRNDLRVTDNKALSSACADPNAKVIALFTATPKQWQQH------DMAERQISFIHQN 62
Query: 143 LADLRKNLMNRGLNLL---IRH-GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L +L+ +L G+ L+ + H + + AK+ A A++ ++ E
Sbjct: 63 LVELQNSLAELGIPLVCQTVNHFTDAAQWVLDYAKTQQADALFFNRQYEWNE-------- 114
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD--------IPFDHSSLPDVYTHFRK 250
Q ++ N P G ++ DD + + VYT FR+
Sbjct: 115 ---------KQRDEWLINQPH-----GLHIHAFDDYLLLPPGSVTTQKGEMYQVYTPFRR 160
Query: 251 SIEAKCTVRGC--IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALG 308
+ + TV C +R P ++ ++PL H P + +F GE +AL
Sbjct: 161 AFLTQLTVTDCRSLRAPEKRAAAINIDK--ALPLFP----HQP-IEDFQQFPAGEKSALT 213
Query: 309 RVNEYFWKKDLLKV--YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV- 365
R+ ++ LKV Y+ R ++ D +++ SP+LA G +SPR + +++ + +
Sbjct: 214 RLRQFC----SLKVGDYQNDR-DIPSIDGTSQLSPYLAVGVLSPRQCFNRLQAENPQVLD 268
Query: 366 -ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTG 423
+ + L EL+WR+++ + + + H + ++ W+ F +W+ G TG
Sbjct: 269 HPDSGAFTWLNELVWREFYSHLLVAFPRLCRHQPFIQWTQHIHWNDSSTDFAAWKTGQTG 328
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YP++DA M++L+ TG+M NR R I SFLV+D+ IDWR G ++F + LLD +N G W
Sbjct: 329 YPIVDAAMRQLNTTGWMHNRLRMIVASFLVKDLLIDWRKGEKYFMSQLLDGSLAANNGGW 388
Query: 484 TYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--------- 533
+ A G D R F+ Q + +D +G ++ +WLP+L+ +P + + P
Sbjct: 389 QWSASTGVDASPWFRIFNPTTQGKKFDAQGAFIRHWLPELQQVPDKYIHTPHEWAVISNT 448
Query: 534 GGSYIEQIVSLKHGNINQNRNQNDSLTRTGRRNNFK 569
+Y E IV K Q R + G+RN+ K
Sbjct: 449 ALNYPEPIVDHK-----QARLATLAAFEAGKRNSLK 479
>gi|425070372|ref|ZP_18473485.1| hypothetical protein HMPREF1311_03580 [Proteus mirabilis WGLW6]
gi|404595155|gb|EKA95708.1| hypothetical protein HMPREF1311_03580 [Proteus mirabilis WGLW6]
Length = 476
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 130/468 (27%), Positives = 219/468 (46%), Gaps = 48/468 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSE-MVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
V +VWFR+DLRV DN+AL A +++ V ++ V P + +H + F+
Sbjct: 6 VHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKA-HHMALSQQA-----FIH 59
Query: 141 ECLADLRKNL--MNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
+ L +L +L +N L L+I A A + + C + V L
Sbjct: 60 DALLNLSHSLAKLNIPLTLIISDTY-------------ADAAQSIVDYCQQH-QVTALFF 105
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF--------DHSSLPDVYTHFRK 250
+ Q L+ Q+ DK L TT+Y D F + V+T FR
Sbjct: 106 NH--QYALNEQNRDKKVME---LLAHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRT 160
Query: 251 SIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRV 310
+ +R + ++ PPP + L + +S F E AAL R+
Sbjct: 161 AF-----LRLFLSQDNASLPPPEIRAHQKAVSPLSAPLFALPISSTKMFPASEQAALQRL 215
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND-S 369
++ +++ ++ ++ D ++K SP+LA G +S R + + E + + N+ S
Sbjct: 216 KQFCYER---VIHYAKWRDIPAIDGTSKLSPYLAIGLVSVRQCFNRLYQTEPDFLENNHS 272
Query: 370 TYWVLF-ELMWRDYFRFISLKYGNSLFHLG-GPRKLEYKWSQDQKLFESWRDGCTGYPLI 427
+ +V F EL+WR++++ + + + + P +W DQ F +W G TG+P+I
Sbjct: 273 SAFVWFNELVWREFYQHLIVANPSLSKQIAFQPWTENIRWRNDQTEFTAWTQGLTGFPII 332
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L+ TG+M NR R + SFLV+D+ IDWR G +F + L+D D SN G W + A
Sbjct: 333 DAAMRQLNQTGWMHNRLRMLTASFLVKDLLIDWRWGENYFMSQLIDGDFASNNGGWQWAA 392
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPG 534
G D R F+ Q + +D +GE++ +WLP+L +P + P
Sbjct: 393 STGTDAVPYFRIFNPTTQGRKFDPDGEFIRHWLPELADVPDRDIHTPS 440
>gi|221065219|ref|ZP_03541324.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
gi|220710242|gb|EED65610.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
Length = 496
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 136/493 (27%), Positives = 223/493 (45%), Gaps = 49/493 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V ++W R DLR+ DN AL A E + V+ D + P+ R +F+ +
Sbjct: 7 VGLIWLRRDLRLADNAALYHALQQCEKLYCVFVFD-----DSILAALPRADR-RVEFICQ 60
Query: 142 CLADL----RKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
LA+L R+ L+ R G P++IIP+LA+ GA AV+ C+++ L
Sbjct: 61 SLAELDAALRETTGRPQTGLITRRGLPQDIIPALARQLGAGAVF-----CNDDDEPAALA 115
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
R L SQ QL L + ++ D++ S V+T ++ + K
Sbjct: 116 RDAQVARSLKSQG--------QLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKI 167
Query: 257 TVRGCIRIPSSFGPPPSVVDWG-----SVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
T PS + D ++P L +P G+R G S A +
Sbjct: 168 TPFYLSAYPSERDLASKLADLPDTERRTIPSAADLGF-APDTLAGLRLPTGVSGARRLLA 226
Query: 312 EYFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSIS----PRYIYEEVKSYERERV 365
++ + L YK R+ + GP Y S L G++S R +E +
Sbjct: 227 DFLPR---LPQYKAARDFPALKGPSY---LSVHLRFGTVSIRELARLAHEAAHHEDWSAA 280
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKW---SQDQKLFESWRDGCT 422
A + L EL+WRD++ I + P +W ++ LF +W +G T
Sbjct: 281 AREGAATWLSELIWRDFYFQILAHQPYVVERSFKPAYDAIEWETGAEADALFAAWCEGRT 340
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
GYPL+DA M++L+ +G+M NR R + SFLV+D+G+DWR G +F L D+D +N G
Sbjct: 341 GYPLVDAAMRQLNTSGYMHNRLRMVTASFLVKDLGLDWRRGEAYFGEKLNDFDLAANNGG 400
Query: 483 WTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQI 541
W + A G D + R F+ Q++ +D EG+++ ++P+L LP + R+ P ++ +
Sbjct: 401 WQWAASTGCDAQPWFRIFNPVTQSEKFDPEGKFIVRYVPELTPLPAKLRHAP---WLAKP 457
Query: 542 VSLKHGNINQNRN 554
+ L I R+
Sbjct: 458 LELAEAGIALGRD 470
>gi|15899214|ref|NP_343819.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus P2]
gi|13815773|gb|AAK42609.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(photoreactivating enzyme). (phrB) [Sulfolobus
solfataricus P2]
Length = 433
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 211/460 (45%), Gaps = 81/460 (17%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + FR DLR+ DN L+KA + E V+P + +DPR + F+I
Sbjct: 2 LCLFIFRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEY----KSEFAINFMIN 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELNVERL---- 196
L +L L RG L + G EE+I +L K AVY ++ T ++ ER+
Sbjct: 58 SLNELNDELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYC 115
Query: 197 -----VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
+ K+ + +L+S+++ K+ + TT Y++ + + YT++ K+
Sbjct: 116 EDTGKIMKSFEDYLLTSKNDFKNYRN-------FTTFYNVVKNKQIKKPVQNNYTNYYKN 168
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
S G ++ EL + +G R G + R
Sbjct: 169 ---------------SLG--------------DEHELPPRQGERGGRKEGIKLIERARQI 199
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
Y R + + D T SP L G++S R +Y + +
Sbjct: 200 NY------------DRKDFVAEDNRTFLSPHLKFGTLSIREVYYSLLDSQA--------- 238
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPLID 428
++ +L WRD++ ++ Y +FH P K EY +W +++LF++W +G TGYP+ID
Sbjct: 239 -IIRQLYWRDFYTLLAY-YNERVFH--EPLKREYNCIEWENNERLFQAWLEGKTGYPIID 294
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG M NR R + FLV+ + IDWR+G ++F + L+DYDP N GNW + A
Sbjct: 295 AGMRQLNRTGDMPNRVRMLTAFFLVKVLIIDWRIGEKYFASKLIDYDPSVNNGNWQWIAS 354
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
VG D R F KQ YD E +Y+ W+ +L++ E
Sbjct: 355 VGTDYIF-RVFDPWKQQVTYDPEAKYIKRWVDELESYDAE 393
>gi|238618755|ref|YP_002913580.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
gi|238379824|gb|ACR40912.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
Length = 433
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 213/460 (46%), Gaps = 81/460 (17%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + FR DLR+ DN L+KA + E V+P + +DPR + F+I
Sbjct: 2 LCLFIFRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEY----KSEFAINFMIN 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELNVERLVR-- 198
L +L L RG L + G EE+I +L K AVY ++ T ++ ER+ R
Sbjct: 58 SLNELNDELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRRYC 115
Query: 199 -------KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
K+ + +L+S+++ K+ + TT Y++ + + YT++ K+
Sbjct: 116 EDTGKIMKSFEDYLLTSKNDFKNYRN-------FTTFYNVVKNKQIRKPVQNNYTNYYKN 168
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
S G ++ EL + +G R G + R
Sbjct: 169 ---------------SLG--------------DEHELPPRQGERGGRKEGIKLIGRARQI 199
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
+Y R + + D T SP L G++S R +Y + DS
Sbjct: 200 DY------------DRKDFVAEDNRTFLSPHLKFGTLSIREVYYSLL---------DSQV 238
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPLID 428
++ +L WRD++ ++ Y +FH P K EY +W +++LF++W +G TGYP+ID
Sbjct: 239 -IIRQLYWRDFYTLLAY-YNERVFH--EPLKREYNCIEWENNERLFQAWVEGKTGYPIID 294
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG + NR R + FLV+ + IDWR+G ++F + L+DYDP N GNW + A
Sbjct: 295 AGMRQLNRTGDIPNRVRMLTAFFLVKVLLIDWRIGEKYFASKLIDYDPSVNNGNWQWIAS 354
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
VG D R F KQ YD E +YV W+ +L++ E
Sbjct: 355 VGTDYIF-RVFDPWKQQITYDPEAKYVKRWVDELESYDAE 393
>gi|410479530|ref|YP_006767167.1| deoxyribodipyrimidine photolyase [Leptospirillum ferriphilum ML-04]
gi|406774782|gb|AFS54207.1| deoxyribodipyrimidine photolyase [Leptospirillum ferriphilum ML-04]
Length = 576
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 212/477 (44%), Gaps = 52/477 (10%)
Query: 62 IVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ 121
I+E + K +IVWFRN+LR+LDN L +A + + LPV+ + Q
Sbjct: 83 ILETIVSVFPEAPTKTEAHISSIVWFRNNLRLLDNPPLREAAERGPL-LPVFVGEHPGKQ 141
Query: 122 TTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVY 181
P GA R + L L +L RG LL G P ++P LA A +
Sbjct: 142 -------PPEGA-RQWWQARSLKRLDHSLSRRGAPLLFLRGDPATLLPDLATRLKADKIL 193
Query: 182 AQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSL 241
A + + R + LQ + S +L L + D+P + S
Sbjct: 194 AMEAIDPDG----RRTQSRLQGAL--------SGKPVELHLFPAGYLISPADLPAERRSP 241
Query: 242 PDVYTHFRKSIEAKCTVR---------GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPK 292
V+T F + ++ I P + P DWG P +P
Sbjct: 242 WKVFTPFWQRAQSHLPPPLPLPAPDRLDGIPFPRTETP----DDWGWEP-------ENPD 290
Query: 293 VSKGMR--FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISP 350
+ MR + GE A R++ + K+ L+ Y+ R + L D S+ SP LA+G IS
Sbjct: 291 WATEMRGFWDPGEEGAWRRLHAFLEKR--LENYR-VRRDFLEEDTSSLLSPHLANGEISI 347
Query: 351 RYIYEEVKSYERERVANDSTYW-VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ 409
R ++ +K E A D L EL WR++ + + + + E +W +
Sbjct: 348 RSVWWAIK----ESTAPDKDREKFLSELGWREFSAHLMWHHPDLASERLHKERPEIRWRE 403
Query: 410 DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
D +W+ G TG PL+DA M++L GF+ NR R +A SFLV+++ IDWR G EWF
Sbjct: 404 DPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAASFLVKNLLIDWRKGREWFAD 463
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
L+D+DP +N +W + +G G D R F+ Q + +D EG YV +LP+L L
Sbjct: 464 NLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGRYVKTYLPELHGL 520
>gi|291281640|ref|YP_003498458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
CB9615]
gi|387505751|ref|YP_006158007.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
RM12579]
gi|416814990|ref|ZP_11891700.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
3256-97]
gi|416825006|ref|ZP_11896295.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA
5905]
gi|419118062|ref|ZP_13663061.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5A]
gi|419119196|ref|ZP_13664175.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5B]
gi|419124923|ref|ZP_13669823.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5C]
gi|419135172|ref|ZP_13679979.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC5E]
gi|425247236|ref|ZP_18640449.1| deoxyribodipyrimidine photolyase [Escherichia coli 5905]
gi|209776604|gb|ACI86614.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|290761513|gb|ADD55474.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
CB9615]
gi|320654283|gb|EFX22336.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659916|gb|EFX27458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA
5905]
gi|374357745|gb|AEZ39452.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
RM12579]
gi|377953948|gb|EHV17509.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5A]
gi|377971814|gb|EHV35167.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5B]
gi|377979980|gb|EHV43250.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5C]
gi|377987482|gb|EHV50668.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC5E]
gi|408173922|gb|EKI00920.1| deoxyribodipyrimidine photolyase [Escherichia coli 5905]
Length = 472
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 134/468 (28%), Positives = 222/468 (47%), Gaps = 51/468 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R EI+ + A++ H Y + +E ++ VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RTLRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M+
Sbjct: 273 LNELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIE 539
R F+ Q + +DREGE++ WLP+L RN PG S E
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPEL-------RNVPGKSVHE 433
>gi|334122851|ref|ZP_08496886.1| deoxyribodipyrimidine photolyase [Enterobacter hormaechei ATCC
49162]
gi|333391718|gb|EGK62828.1| deoxyribodipyrimidine photolyase [Enterobacter hormaechei ATCC
49162]
Length = 470
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/473 (26%), Positives = 220/473 (46%), Gaps = 41/473 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A + + VL ++ P Q H P+ AL + +L
Sbjct: 5 LVWFRADLRIHDNFALAAACRAKDANVLALFIATPEQWQQ--HDMAPRQAALLSAYL--- 59
Query: 143 LADLRKNLMNRGLNLLIRHG----KPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
DL+ +L +G+ L+ + + + ++ + +Y + E +RL+
Sbjct: 60 -NDLQHSLAEKGIPLIYKEATDFAAQRQTVQAICQQHAVTHLYYNYQYEFNEQQRDRLLE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI--EAKC 256
K L V+ +D P + MY V+T F+ + K
Sbjct: 119 KTLSGVICEG-FDDSVMLAPGSVMTGSHEMY-------------KVFTPFKNAFIKRLKE 164
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+ C+ P+ G ++ + + L+ P+ S F E AA+ R+ ++
Sbjct: 165 GLPECVTAPAVRGE--------TITELPAIRLNYPQQSFDETVFPASEKAAIARLRQFCT 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ E R + + +++ S LA G++SPR + + + + + L
Sbjct: 217 QG---AAEYEARRDFPAIEGTSRLSACLALGALSPRQCLHRLLAEKPHALDGGAGAVWLN 273
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + + + H R E +W ++ L ++W+ G TG+P++DA M++L
Sbjct: 274 ELIWREFYRHLMTYHPDLCKHRPFIRWTEQVQWQSNETLLKAWQRGLTGFPIVDAAMRQL 333
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 334 NETGWMHNRLRMITASFLVKDLLIDWRTGERYFISQLIDGDLAANNGGWQWAASTGTDAA 393
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKH 546
R F+ Q Q +D +GE++ W+P+LK +P + + P +Q V+L +
Sbjct: 394 PYFRIFNPTTQGQRFDADGEFIRRWVPELKDVPAKAIHEPWVWADKQRVTLNY 446
>gi|334703517|ref|ZP_08519383.1| deoxyribodipyrimidine photolyase [Aeromonas caviae Ae398]
Length = 474
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 130/454 (28%), Positives = 215/454 (47%), Gaps = 36/454 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ DN AL A E V ++ V P Q K +R +F++ +
Sbjct: 3 LVWFRNDLRLADNPALRHACAGDEPVAALFIVSPTQWQQH------KLAPVRQRFMLAQV 56
Query: 144 ADLRKNLMNRGLNL-LIRHGKPEEI---IPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+ + L G+ L L+R E+ + +L + G +YA + +EL + V
Sbjct: 57 DAMGRELAALGIPLHLLRVETFAEVPTALTALCRELGVSQLYANQAIEIDELRRDHAVSA 116
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + ++S + P +++ G+ PF + L K++E V
Sbjct: 117 ALGEQGMTSHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWL--------KALEEDGFV- 167
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
R P+ G P + W + E ++ +++ R+ GE+ A R++ +
Sbjct: 168 -IHRAPAPRGEP---LPWLPLAEREWVDDGLGELTADTRWPVGEAEASRRLHAFL--DQA 221
Query: 320 LKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVK---SYERERVANDSTYWVL 374
+ Y ETR+ + G ++ SP+LA+G IS R ++ Y + A W L
Sbjct: 222 VLDYGETRDFPALAG---TSVLSPYLAAGIISARQCVGALQQRLGYRPQSKAQPGFVW-L 277
Query: 375 FELMWRDYFR-FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
EL+WR+++R + L S+ P WS D F +W +G TGYP++DA M+
Sbjct: 278 NELIWREFYRHLLVLIPSLSMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPVVDAAMRC 337
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+M NR R I SFL +D+ I WR+G ++F + L+D D +N G W + AG G D
Sbjct: 338 LNATGWMHNRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADA 397
Query: 494 RED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q Q +D +GE++ W+ +L +P
Sbjct: 398 APYFRVFNPTTQGQRFDPQGEFIRTWVTELADVP 431
>gi|432945847|ref|ZP_20141629.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE196]
gi|433042201|ref|ZP_20229726.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE117]
gi|431462534|gb|ELH42745.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE196]
gi|431559550|gb|ELI33098.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE117]
Length = 472
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 133/455 (29%), Positives = 221/455 (48%), Gaps = 44/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R EII + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLN 274
Query: 376 ELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + Y + H + +++ W + ++W++G TGYP++DA M+
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLKAWQEGITGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVP 427
>gi|429092381|ref|ZP_19155017.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 1210]
gi|426742861|emb|CCJ81130.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 1210]
Length = 473
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 135/471 (28%), Positives = 218/471 (46%), Gaps = 34/471 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLRV DN AL A D V+ ++ P+ Q H P+ +A F+ +
Sbjct: 5 LVWFRADLRVFDNLALAAACRDPDARVIGLFIATPQ--QWRDHTLAPR----QAAFIWQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKP-EEIIPSLAKSFGAHAVYAQKETCSEELNVER---LVR 198
L L+ L RG+ L R + +LA H V A ELN R V
Sbjct: 59 LEALQLALAKRGIPLFTREAPDFAAAVETLATFCDEHQVSALFYNYQYELNEARRDAAVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ L + V + Q D S P ++ G+ + P+ + L R+ E +
Sbjct: 119 RRLAERV-ACQGFDDSVMLPPGSVVTGSGEMYKVFTPYSRAFL-------RRLGEG---L 167
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
C+ P P + VP + + + + + F GE AAL R+ E+ +
Sbjct: 168 PPCVNAPK----PRAGGAISDVPALAPFD-YPCETPDALLFPAGEEAALQRLREFC--QT 220
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRY-IYEEVKSYERERVANDSTYWVLFEL 377
Y E R+ ++ SP+LA G +SPR ++ + + R W L EL
Sbjct: 221 AAGDYPEKRD-FPAIRGTSLLSPYLAIGVLSPRQCLHRLLTEHPRALEGGSGAVW-LNEL 278
Query: 378 MWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
+WR+++R + + + H W Q+ LFE+W +G TGYP++DA M++++
Sbjct: 279 IWREFYRHLIVAWPCLCRHQPFVDWTARVAWQQNDALFEAWCEGRTGYPIVDAAMRQMNA 338
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
TG+M NR R I SFLV+D+ +DWR G +F + L+D D +N G W + A G D
Sbjct: 339 TGWMHNRLRMITASFLVKDLLVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPY 398
Query: 497 -RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKH 546
R F+ Q Q +D +G+++ W+P+L +P + + P +Q +L++
Sbjct: 399 FRIFNPTTQGQRFDADGDFIRRWVPELSHIPGKAVHEPHDWAKKQGAALRY 449
>gi|253687618|ref|YP_003016808.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251754196|gb|ACT12272.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 497
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 134/466 (28%), Positives = 218/466 (46%), Gaps = 49/466 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN AL A D + VL V+ P +Q H P+ A FL+E
Sbjct: 14 LVWLRNDLRITDNLALSAACQDPNATVLAVFIATP--AQWEKHDMAPRQAA----FLLEN 67
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
L ++ L +G+ L + ++ A+ Y + +E L ++ V
Sbjct: 68 LTSVQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLR-DKQV 126
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS-----I 252
+ L V+ +D P L MY V+T FR++ +
Sbjct: 127 KDRLADSVVCHGYHDSLLLPPGSVLTGNGEMY-------------KVFTPFRQAFIKRLL 173
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
EA+ T C+ P + G P + + Q E+ S F GE AAL ++
Sbjct: 174 EAETT---CVPAPDARGEPIHNMMALAPFSYPQREVDSDD------FPCGERAALQQLRR 224
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY---ERERVANDS 369
+ ++ ++ Y R+ P ++K SP+LA G +SPR + +++ ER +
Sbjct: 225 FC--REQVQDYDRQRDVPALPG-TSKLSPYLALGIVSPRQCFNRLRAECPDMLERREGGA 281
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPLID 428
W EL+WR+++R + + + H ++ KW + + +W+ G TGYP++D
Sbjct: 282 FTW-FNELVWREFYRHLIVSWPQLCKHRPFTAWTQWVKWRESSEDLTAWQQGKTGYPIVD 340
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG+M NR R I SFLV+D+ IDWR G +F + LLD D +N G W + A
Sbjct: 341 AAMRQLNGTGWMHNRLRMICASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAAS 400
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G D R F+ Q + +D EG ++ +WLP+L A+P + + P
Sbjct: 401 TGTDAAPYFRIFNPTTQGERFDPEGRFIRHWLPELAAVPDKDIHQP 446
>gi|422834749|ref|ZP_16882809.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E101]
gi|432453458|ref|ZP_19695696.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE193]
gi|433032198|ref|ZP_20219973.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE112]
gi|371613933|gb|EHO02421.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E101]
gi|430974091|gb|ELC91029.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE193]
gi|431558805|gb|ELI32389.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE112]
Length = 472
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 133/453 (29%), Positives = 219/453 (48%), Gaps = 40/453 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R EII + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVP 427
>gi|456392517|gb|EMF57860.1| deoxyribodipyrimidine photolyase [Streptomyces bottropensis ATCC
25435]
Length = 453
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 130/477 (27%), Positives = 209/477 (43%), Gaps = 47/477 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V++V F DLR+ D+ L A D S V+P++ D + GF R FL +
Sbjct: 3 VSVVLFTCDLRLHDHPPLRAALDGSRQVVPLFVRD----RAVDRAGFAAPN--RLAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL DL L RG L++R G E + +A A V+ + + E +R+ L
Sbjct: 57 CLRDLDAGLRERGGRLVVRSGDLVEEVCKVAGEADADEVHLAADVSAYAHRREERLRRAL 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF-RKSIEAKCTVRG 260
+ + +D T + + T+ H + + H+ R+ + T
Sbjct: 117 EAEGVRLHVHDTVTTAVEPGAVLPTSSDHF-------AVFTPYFAHWSRRRLRDPLTAPR 169
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ +P G +P L SP ++ GGE GR W + +
Sbjct: 170 TVHVPDGVGSE-------ELPSRAGLSGLSPGLA-----AGGERE--GRARFAAWLRSGV 215
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
+ Y++ +++ G D +++ SP L G++SP + + RV + ++ WR
Sbjct: 216 EAYEDRHDDLAG-DATSRLSPHLHFGTLSPVELVHRSR-----RVGGPGAEAFVRQVAWR 269
Query: 381 DYFR-FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
D+ R ++ + + R +W E+WR G TGYP++DA M++L G+
Sbjct: 270 DFNRQVLAARPAAATVDY---RAKHDRWRTAPDEVEAWRAGRTGYPVVDAAMRQLRHEGW 326
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
M NRGR + SFL + + +DWR+GA F L+D D +N NW + AG G D R +R
Sbjct: 327 MHNRGRLLTASFLTKTLYVDWRVGARHFLDLLVDGDMANNQLNWQWMAGTGTDTRPNRVL 386
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------GGSYIEQIVSLKHG 547
+ QA+ YD GEYV W+P+L L + P G Y E +V L G
Sbjct: 387 NPVTQAKRYDPHGEYVRRWVPELADLAAPAVHEPWKLQGLDRAGLDYPEPLVELSEG 443
>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
Length = 452
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/466 (25%), Positives = 214/466 (45%), Gaps = 51/466 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
I WFR DLR+ DN AL++A S++ ++P+Y +D + G + +L
Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSADHLIPLYILDDQ---------LKMLGDAQRWWLHH 52
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L+ L+ L +G +L+++ G + ++ L K + +Y + ++ + L
Sbjct: 53 SLSSLQTALSKKGTSLILKKGDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRL 112
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ +++ T + I ++T F K I A R
Sbjct: 113 PPL--------------SVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKT 158
Query: 262 IRIPSSFGPPPSVVD-----WGSVPLIEQLELHSPKVSKGM-RFVGGESAALGRVNEYFW 315
+ P F ++ W +P P S+G ++ GE A + ++
Sbjct: 159 LAAPKKFSQHRAIKSDNLETWNLLP-------KHPDWSQGFDQWKPGEKNAQIVLKKFI- 210
Query: 316 KKDLLKVYKETRNEMLGPDYSTK--FSPWLASGSISPRYIYEEV-KSYERERVANDSTYW 372
K+ LK Y R+ PD S+ SP+L G IS R ++ + ++ +++ +
Sbjct: 211 -KENLKNYPAHRDR---PDISSTSHLSPYLHFGEISIRQVWTAITQATIQDKNLQKAADV 266
Query: 373 VLFELMWRDYFRFISLKY---GNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L +L+WR++ ++ + G S F + +KW +++ +W+ G TGYP++DA
Sbjct: 267 FLRQLIWREFAYYLLWHFPQMGKSNFR---NQFDNFKWKKNKNWLRAWQKGLTGYPIVDA 323
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M+EL TG+M NR R I SFLV+D+ IDWR G +WF LLD D +N W + AG
Sbjct: 324 GMRELWCTGYMHNRARMIVASFLVKDLMIDWREGEKWFWNTLLDADLANNALGWQWIAGC 383
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPG 534
G D R F+ Q++ +D +G Y+ W+P+L +P + ++P
Sbjct: 384 GLDAAPYFRIFNPILQSKKFDPDGTYIKRWIPELAKVPSKYIHYPA 429
>gi|417595633|ref|ZP_12246296.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3030-1]
gi|345359953|gb|EGW92126.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3030-1]
Length = 472
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 222/460 (48%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR +T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWET--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|385775002|ref|YP_005647570.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A]
gi|323473750|gb|ADX84356.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A]
Length = 433
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 131/462 (28%), Positives = 214/462 (46%), Gaps = 85/462 (18%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRH--SQTTYHFGFPKTGALRAQFL 139
+ + FR DLR+ DN L+KA + E V+P + +DPR ++ Y F F+
Sbjct: 2 LCLFIFRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFA------INFM 55
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELNVERL-- 196
I L +L L RG L + G EE+I +L K AVY ++ T ++ ER+
Sbjct: 56 INSLNELNDELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRK 113
Query: 197 -------VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
+ K+ + +L+S+++ K+ + TT Y++ + + YT++
Sbjct: 114 YCEDTGKIMKSFEDYLLTSKNDFKNYRN-------FTTFYNVVKNKQIRKPVQNNYTNYY 166
Query: 250 KSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGR 309
K+ S G ++ EL + +G R G + R
Sbjct: 167 KN---------------SLG--------------DEHELPPRQGERGGRKEGIKLIERAR 197
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
Y R + + D T SP L G++S R +Y + +
Sbjct: 198 QINY------------DRKDFVAEDNRTFLSPHLKFGTLSIREVYYSLLDSQA------- 238
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPL 426
++ +L WRD++ ++ Y +FH P K EY +W +++L ++W +G TGYP+
Sbjct: 239 ---IIRQLYWRDFYTLLAY-YNERVFH--EPLKREYNCIEWENNERLLQAWVEGKTGYPI 292
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
IDA M++L+ TG M NR R + FLV+ + IDWR+G ++F + L+DYDP N GNW +
Sbjct: 293 IDAGMRQLNRTGDMPNRVRMLTAFFLVKVLLIDWRIGEKYFASKLIDYDPSVNNGNWQWI 352
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
A VG D R F KQ YD+E +YV W+ +L++ E
Sbjct: 353 ASVGTDYIF-RVFDPWKQQITYDQEAKYVKRWVDELESYDSE 393
>gi|333983407|ref|YP_004512617.1| deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
gi|333807448|gb|AEG00118.1| Deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
Length = 453
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/453 (28%), Positives = 202/453 (44%), Gaps = 51/453 (11%)
Query: 76 KRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALR 135
KR K + I FR DLR+ DN L A SE VL + DPR + + P
Sbjct: 3 KRFAKSLFI--FRRDLRLYDNSGLNAALQQSEQVLACFIFDPRQIEPHAYQSQPGL---- 56
Query: 136 AQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCS----EEL 191
QF++E L DL++ L + G+PE+++ L + A++ ++ +
Sbjct: 57 -QFMLEALQDLQQQFRTHQWQLGLYQGQPEQLVSRLHREQAFEAIFVNRDYTPFGRRRDA 115
Query: 192 NVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
+++ RK Q + D N P+ L + Y V+T F
Sbjct: 116 DLQTFCRK---QGLAFYSCADTLLNEPEHGLKSDGSAYQ-------------VFTAFYNR 159
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLEL-HSPKVSKGMRFVGGESAALGRV 310
+ +P + + LI +L+ HS + GG AAL ++
Sbjct: 160 ARLHP-----VALPQGLADGQLLDGEQNSDLISRLQQDHSNALP------GGRQAALQQL 208
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
++ +D Y + R + ++ S +L G S R Y V E + +
Sbjct: 209 DQLTACRD----YSQQR-DFPALAATSNLSAYLKFGCCSVRETYYAVV----ESLGTEHP 259
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
+L +L WRD+F I+ + H R + W D++ F++W +G TG P++DA
Sbjct: 260 --LLRQLYWRDFFTQIAFHFPRVFGHAFHERYDKIVWRNDREEFQAWTEGRTGVPIVDAG 317
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG M NR R I SFLV+D+ IDWR G +F LLDYDPC N GNW + A G
Sbjct: 318 MRQLNQTGAMHNRVRMIVASFLVKDLHIDWRWGERYFARHLLDYDPCVNNGNWQWAASTG 377
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQL 522
D + R F+ Q + +D + Y+ +W+P+L
Sbjct: 378 CDAQPYFRIFNPWLQQKKFDPDCVYIKHWVPEL 410
>gi|299534052|ref|ZP_07047404.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
gi|298717961|gb|EFI58966.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
Length = 490
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 134/493 (27%), Positives = 222/493 (45%), Gaps = 49/493 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ ++W R DLR+ DN AL A E + V+ D T H R +F+ +
Sbjct: 1 MGLIWLRRDLRLADNAALYHALQQCEKLYCVFVFDDSILATLPH------ADRRVEFICQ 54
Query: 142 CLADLRKNLMNRG----LNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
LA+L L L+ R G P++IIP+LA+ GA AV+ C+++ +
Sbjct: 55 SLAELDAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVF-----CNDDDEPAAIA 109
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
R L SQ QL L + ++ D++ S V+T ++ + K
Sbjct: 110 RDAQVARSLKSQG--------QLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKI 161
Query: 257 TVRGCIRIPSSFGPPPSVVDWGS-----VPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
T PS + D +P L +P G+R G S A +
Sbjct: 162 TPFYLSAYPSERDLASKLADLPDSERRPIPTAADLGF-APDTLAGLRLPTGVSGARQLLA 220
Query: 312 EYFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSIS----PRYIYEEVKSYERERV 365
++ + L YK R+ + GP Y S L G++S R +E + +
Sbjct: 221 DFLPR---LPQYKTARDFPALKGPSY---LSVHLRFGTVSIRELARLAHEAAHNEDWSAA 274
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKW---SQDQKLFESWRDGCT 422
A + L EL+WRD++ I + P +W ++ LF +W +G T
Sbjct: 275 AREGAATWLSELIWRDFYFQILAHQPYVVERSFKPAYDAIEWETGAEADPLFAAWCEGRT 334
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
GYPL+DA M++L+ +G+M NR R + SFLV+D+G+DWR G +F L D+D +N G
Sbjct: 335 GYPLVDAAMRQLNSSGYMHNRLRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGG 394
Query: 483 WTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQI 541
W + A G D + R F+ Q++ +D +G+++A ++P++ LP + R+ P ++ +
Sbjct: 395 WQWAASTGCDAQPWFRIFNPVTQSEKFDPDGKFIARYVPEVAQLPSKLRHAP---WLAKP 451
Query: 542 VSLKHGNINQNRN 554
+ L I R+
Sbjct: 452 LELAEAGIALGRD 464
>gi|407776584|ref|ZP_11123857.1| DNA photolyase [Nitratireductor pacificus pht-3B]
gi|407301875|gb|EKF20994.1| DNA photolyase [Nitratireductor pacificus pht-3B]
Length = 487
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 132/463 (28%), Positives = 215/463 (46%), Gaps = 33/463 (7%)
Query: 71 TSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPK 130
T++ + ++ FR+DLR+ DN AL A S + V+ +D T P
Sbjct: 2 TTERAASGAEDTLLILFRHDLRLTDNRALAAAARSGRPLAAVFILDETSEGTR-----PP 56
Query: 131 TGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEE 190
GA R +L L L ++L G+ L+++ G + LA A AVY +
Sbjct: 57 GGARR-WWLHHSLKALGEDLGRLGIRLILQRGPMADTAMRLAARLNAGAVYWNRRYDPPG 115
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 250
+ + ++ +L+ + ++S + H +L G + PF + ++
Sbjct: 116 IAADTRMKASLRDAGIEAESFEGHLLHEPWRLKTGAGGPYRVFTPF--------WRALQQ 167
Query: 251 SIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLEL--HSPKVSKGM--RFVGGESAA 306
SIE R+ ++ D S PL +Q EL P S G+ ++ GE+ A
Sbjct: 168 SIEPHAPADRPHRLNAA------DHDVASDPL-DQWELLPSKPDWSGGLAAQWTPGEAGA 220
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
R++ + + R ++L ++ SP LA G ISP I+ +++
Sbjct: 221 RERLDAFLAGG---GTGYDRRRDVLADAGTSSLSPHLAHGEISPWQIWSALEAGHELPAG 277
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYP 425
+ T+ EL WR++ + L + L R + + W +D K +W+ G TGYP
Sbjct: 278 DAQTF--RKELGWREFCWHL-LFHNPDLATRNFNRDFDAFPWQRDDKALRAWQRGQTGYP 334
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
++DA M++L TG+M NR R I SFLV+D+ +DWR G EWF L+D DP SN NW +
Sbjct: 335 VVDAAMRQLWQTGWMHNRARMIVASFLVKDLRLDWRSGEEWFWDTLVDADPASNPANWQW 394
Query: 486 GAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
AG G D R F+ Q + +D +G YV ++P+L+ LPK
Sbjct: 395 VAGSGADAAPFFRIFNPVLQGEKFDPDGAYVHRFVPELRNLPK 437
>gi|331651706|ref|ZP_08352725.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M718]
gi|331049984|gb|EGI22042.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M718]
Length = 472
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 218/455 (47%), Gaps = 44/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R E + A++ H Y + +E +++VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RALRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M+
Sbjct: 273 LSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVP 427
>gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
Length = 465
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/451 (26%), Positives = 209/451 (46%), Gaps = 43/451 (9%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
W R DLR DN A L A S+ V+PV+ D + H G P R F+++ L
Sbjct: 5 WHRRDLRATDN-AGLAAATPSDPVVPVFIFD---TAVLDHAGPP-----RVAFMLDALDS 55
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LR+ ++G +L++ G P ++P LA GA V K+ + VR+ L
Sbjct: 56 LREWYRDKGSDLVVAEGDPTSVLPELAAQHGAEKVTWGKDYSGLARERDAAVRQALDDAD 115
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
++ ++ + H ++ TT D P+ V+T+F + +
Sbjct: 116 VAREAVQNAVLHEPGEI---TTN---DGDPYS------VFTYFGRKWHDREKA------- 156
Query: 266 SSFGPPPSV----VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ + PP + VD ++P + L P+ G A ++++ +
Sbjct: 157 APYDPPSADTLADVDGDALPTLADLGFEEPEADVP---AAGTEEARALLDDFLDEN---- 209
Query: 322 VYK-ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN--DSTYWVLFELM 378
VY+ E R + + +++ S L G+I R +Y+ ++ + + DS +L
Sbjct: 210 VYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQSQLA 269
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+++ + + + + + +W D++L ++W+DG TGYP++DA M++L
Sbjct: 270 WREFYTQVLFAHPHVVSSNYKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLRDEA 329
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
+M NR R I SFL +D+ IDWR G EWF L+D+D ++ G W + A G D + R
Sbjct: 330 YMHNRVRMIVASFLTKDLLIDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFR 389
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
F+ Q ++YD EY+ ++P+L+ E
Sbjct: 390 IFNPMTQGEDYDPNAEYIKEYVPELRDAAPE 420
>gi|312114970|ref|YP_004012566.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
17100]
gi|311220099|gb|ADP71467.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
17100]
Length = 484
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 126/449 (28%), Positives = 213/449 (47%), Gaps = 29/449 (6%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+V FR DLR+ D+ AL A ++ VLPVY +D +T + + G +L +
Sbjct: 10 ALVLFRRDLRLADHPALSAAAETGAPVLPVYILD---DETPGRW---RMGGASRWWLYQS 63
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L +L RG L++RHG+ + ++ L + GA +V + + +E ++ +L+
Sbjct: 64 LRSLGADLEARGSRLVLRHGETKRVLGELIEETGARSVLFTRGYEPYQRALEGRLKPSLE 123
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+S + L+ ++ +L PF V+T F +++ + +
Sbjct: 124 ARGVSLRRFGGQI------LVEPESIANLAGEPFR------VFTPFFRALSQRGAPATPL 171
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHS--PKVSKGMR--FVGGESAALGRVNEYFWKKD 318
P P S W + L L P + G+R + GE+AA R+ + +
Sbjct: 172 PAPQKLAAPDS---WPRSDALASLALEPTRPDWAGGIRAAWRPGETAARERLTAFI--EA 226
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L Y+ R+E G D +++ SP LA G I PR I+ V++ + + L E+
Sbjct: 227 ALPSYRTRRDEP-GIDGTSRLSPHLAFGEIGPRQIWHAVQAAAEAAGDHAAADAYLREVG 285
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++ + + + P + W D E+W+ G TGYP++DA M++L TG
Sbjct: 286 WREFSYHLLFHFPHLPEAPFRPEFTAFPWRDDADALEAWQRGRTGYPIVDAGMRQLWQTG 345
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
+M NR R I SFL++ + W+ GA+WF L+D D +N +W + AG G D R
Sbjct: 346 WMHNRVRMIVASFLIKHLLSPWQTGADWFWDTLVDADLANNAASWQWVAGSGADAAPYFR 405
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALP 526
F+ Q + +D G+YV ++P+L LP
Sbjct: 406 IFNPVLQGEKFDPRGDYVRAFVPELAKLP 434
>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
4136]
Length = 475
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 133/456 (29%), Positives = 204/456 (44%), Gaps = 36/456 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V++ WFR DLR+ DN AL A +S V+P Y + +++ TG R FL
Sbjct: 7 VSLHWFRRDLRLTDNTALHAAQTASTQVIPFYVL------SSWKKAHAWTGPNRQHFLCG 60
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L KNL G L+IR G+ I L + GA A+Y ++ +E V
Sbjct: 61 NLESLAKNLEAIGSRLIIRSGETVSEIERLIRETGATALYTNRDPDPYGQTIETHVIALC 120
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHS--SLPDVYTHFRKSIEAKCTVR 259
++ ++ + + H +++ G + P+ + SLP + VR
Sbjct: 121 NKLGVAFHTCKDAVLHQPQEVLTGNGGPYRVFTPYSKNWLSLPKA--------QPLSKVR 172
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
PS P + S+PL + H P+ + + GE AA R+ +
Sbjct: 173 TLGDAPS-----PKI---KSLPLPTVVHWHLPEPTATLP-TPGEKAARDRMKTFV-DSVR 222
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY----EEVKSYERERVANDSTYWVLF 375
L Y+ETRN P +++ SP L G IS R +Y + + + A +
Sbjct: 223 LPRYEETRNFPSVPG-TSQLSPDLRYGLISIRELYHRCQQALAQAGGQPAAQSGINTYIK 281
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL WR+++ + Y L P W QD +W++G TG+PL+DA M++L
Sbjct: 282 ELAWREFYMAVLHFYPEVLETDFNPDLRGVSWHQDPAGLAAWKEGRTGFPLVDAGMRQLL 341
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R I FL +D+ + W G F L+D + SN G W + AG G D
Sbjct: 342 ATGWMHNRVRMIVSMFLTKDLHVHWMEGESHFMQLLVDGEIASNNGGWQWSAGTGAD--A 399
Query: 496 DRYFSIP---KQAQNYDREGEYVAYWLPQLKALPKE 528
+F I Q + YD EG+Y+ W+P+LK +P E
Sbjct: 400 APWFRIQNPWTQTKRYDPEGKYIKTWVPELKDVPAE 435
>gi|456354652|dbj|BAM89097.1| deoxyribodipyrimidine photo-lyase type I [Agromonas oligotrophica
S58]
Length = 437
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 134/442 (30%), Positives = 197/442 (44%), Gaps = 62/442 (14%)
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
+L + L L+ L G+ L+IR G ++I +LA+ A AVY +E V V
Sbjct: 11 WLAQSLRALQGELHTLGVELVIRRGPAAKVIGALARETNAGAVYWNDVAQAEPRAVAADV 70
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSL-------PDVYTHFRK 250
L + + S+ DD+ D + L P V+T F K
Sbjct: 71 EVALDAIDVKSR-------------------VFADDLLVDPAELRGKEGRGPRVFTPFWK 111
Query: 251 SIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIE-QLELHSPKVSKGMR--FVGGESAAL 307
+ A + IP+ PP V S+ + E LE P + G+R + GE AA
Sbjct: 112 RVLALGDPPKPLPIPARLSSPPGVA---SLAIDELGLEPTRPDWAGGLRATWQAGERAAQ 168
Query: 308 GRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA- 366
R+ ++ + ++ Y R+ D +++ SP L G ISPR I+ + E A
Sbjct: 169 ERLGKFL--ETAVRSYAADRDRP-DIDATSRMSPHLRFGEISPRQIWHAARFAAEEHPAF 225
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE-----YKWSQDQKLFESWRDGC 421
L EL WR++ R L Y N R L+ + W+Q+ ++W+ G
Sbjct: 226 ARGIEKFLSELGWREFSRH--LLYNNPDL---ATRNLQASFDAFPWAQNDAALQAWQRGR 280
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TGYP++DA M+EL TG M NR R +A S LV+ + IDWR+G +WF L+D DP SN
Sbjct: 281 TGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKHLLIDWRLGEQWFWDTLVDADPGSNPA 340
Query: 482 NWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP------- 533
+W + AG G D R F+ Q + +D G YV W+P+L LP + P
Sbjct: 341 SWQWVAGSGADAAPYFRVFNPVLQGEKFDSNGTYVRRWVPELARLPASLIHQPWAAKPLE 400
Query: 534 --------GGSYIEQIVSLKHG 547
G SY IV +HG
Sbjct: 401 LAEAGVALGRSYPAPIVEHRHG 422
>gi|427730047|ref|YP_007076284.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Nostoc sp. PCC 7524]
gi|427365966|gb|AFY48687.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Nostoc sp. PCC 7524]
Length = 479
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 124/464 (26%), Positives = 215/464 (46%), Gaps = 52/464 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A + S V+ V+C+D + R +++ CL
Sbjct: 6 LFWHRRDLRIADNTGLALAREQSPQVVGVFCLDSNILERD------DVAPARVTYMMGCL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L++ G LLI HG+P + IP LA++ A AV+ + +R + ++L
Sbjct: 60 QALQQRYAQAGSQLLILHGEPVQAIPHLAETLQAKAVFWNWDVEPYSQIRDRAIMESL-- 117
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
K+ L W ++ ++I ++ VYT F K+ +K +
Sbjct: 118 ---------KAKGIEFLTQNWDQILHAPEEIRSGSNTPYTVYTPFWKNWISKPKAQPVAT 168
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV--------GGESAALGRVNEYFW 315
+ ++ G + L +Q + +K + FV GE+AA ++ E+
Sbjct: 169 LENTAGLTEKQQE-----LAKQAGAIALPTAKELGFVWDTDLIISPGEAAAQEKLEEFTA 223
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY----ERERVANDSTY 371
K + Y+E RN D +++ S L G I R +++ + E V
Sbjct: 224 KA--ITEYQEQRN-FPAVDGTSQLSAALKFGVIGIRTVWQATTAVLEDCNSEEVTTSIRT 280
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHL-----GGPRKL--EYKWSQDQKLFESWRDGCTGY 424
W EL WR++ Y ++++H G R + + W +++ F +W +G TGY
Sbjct: 281 WQQ-ELAWREF-------YQHAMYHFPELAEGAYRDIFKSFPWENNEEHFLAWCEGKTGY 332
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
P++DA M++++ G+M NR R I SFL +D+ I+ + G ++F L+D D +N G W
Sbjct: 333 PIVDAAMRQMNEIGWMHNRCRMIVASFLTKDLLINPQWGEKYFMQKLIDGDLSANNGGWQ 392
Query: 485 YGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
+ A G DP+ R F+ QAQ +D + EY+ WLP+L+++ E
Sbjct: 393 WSASSGMDPKPVRIFNPASQAQKFDPDAEYIRQWLPELRSIDTE 436
>gi|188534445|ref|YP_001908242.1| deoxyribodipyrimidine photolyase [Erwinia tasmaniensis Et1/99]
gi|188029487|emb|CAO97364.1| Deoxyribodipyrimidine photo-lyase [Erwinia tasmaniensis Et1/99]
Length = 477
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 131/459 (28%), Positives = 218/459 (47%), Gaps = 44/459 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN AL A S + V+ ++ P Q H PK +A+F+ +
Sbjct: 5 LVWLRNDLRINDNHALYAACRSQQAKVIALFIATP--EQWRAHHMAPK----QAEFIWQS 58
Query: 143 LADLRKNLMNRGLNLLIRHGKP-EEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L D++++L +G+ L + + +P L H V E+N ER +
Sbjct: 59 LQDVQQSLAAKGIALHVAQCDDFDASVPLLQAFCREHRVDRLFYNYQYEVN-ERQRDAAM 117
Query: 202 QQVVLS----SQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
+Q + +Q D S P ++ G MY V+T F K+ K
Sbjct: 118 EQALFEDDVVAQGFDDSLLLPPGSVLTGNREMYK-------------VFTPFSKAF-VKR 163
Query: 257 TVRGCIRIPSSFGPPPSV-----VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
+G +P P P V ++ G+ PL E + + F GE AA+ R+
Sbjct: 164 LQQG---LPECL-PAPDVRQGGAIEAGADPL-EPFNYPREDIDPSL-FPSGEKAAIARLR 217
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
E+ + + Y + R+ + D +++ S +LA+G +SPR + + + +
Sbjct: 218 EFC--QQAVTDYPDKRD-LPASDGTSRLSVYLATGVLSPRQCLHRLLKQHSGALEDARVF 274
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPR-KLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L EL+WR+++R + + + H R KW + + +W+ G TGYP++DA
Sbjct: 275 VWLNELIWREFYRHLLVAFPALCRHQPFTRWTRNVKWREAPQHLTAWQQGKTGYPIVDAA 334
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ G+M NR R I SFLV+D+ +DWR G +F + LLD D +N G W + A G
Sbjct: 335 MRQLNSLGWMHNRLRMITASFLVKDLLVDWREGERYFMSQLLDGDLAANNGGWQWAASTG 394
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
D R F+ Q + +D++GE++ WLP+L+ +P E
Sbjct: 395 TDAAPYFRIFNPTTQGERFDKDGEFIRRWLPELRDVPAE 433
>gi|419924461|ref|ZP_14442350.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-15]
gi|388389960|gb|EIL51464.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-15]
Length = 472
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 133/464 (28%), Positives = 224/464 (48%), Gaps = 48/464 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R EII + A++ H Y + +E +++VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVDVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R VL +D P + MY + PF ++ L R+ +
Sbjct: 119 RALRN-----VLCEGFDDSVILPPGAVMTGNHEMYKVF-TPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--ENGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L EL+WR+++R + Y + H + +++ W + ++W+ G TGYP++DA
Sbjct: 273 LSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIVDAA 330
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 331 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTG 390
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 391 TDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|448677847|ref|ZP_21689037.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
gi|445773522|gb|EMA24555.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
Length = 465
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/462 (26%), Positives = 210/462 (45%), Gaps = 65/462 (14%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
W R DLR DN A L A S+ V+PV+ D H G P R F+++ L
Sbjct: 5 WHRRDLRATDN-AGLAAATPSDPVVPVFVFD---KAVLDHAGPP-----RVAFMLDALDS 55
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE----------TCSEELNVER 195
LR+ +RG +L+I G P ++P+LA +G V K+ + L+ E
Sbjct: 56 LREWYRDRGSDLVITEGDPTSVLPALAAEYGTEKVTWGKDYSGLARERDAAVRQALDDED 115
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
+ R+ +Q VL + + +TN D P+ V+T+F + +
Sbjct: 116 VAREAVQNAVLH-EPGEITTN---------------DGDPYS------VFTYFGRKWHDR 153
Query: 256 CTVRGCIRIPSSFGPPPSV----VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
+ + PP + VD +P + L P+ + G A ++
Sbjct: 154 -------EKEAPYDPPSTDELADVDGDPIPTLADLGFEEPEATVP---AAGTDDARALLD 203
Query: 312 EYFWKKDLLKVYK-ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND-- 368
++ + VY+ E R + + +++ S L G+I R +Y+ + +E D
Sbjct: 204 DFLDEN----VYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRTQD-AKEGTGGDRR 258
Query: 369 -STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLI 427
S +L WR+++ + + + + + +W D++L ++W+DG TGYP++
Sbjct: 259 ESVREFQSQLAWREFYTQVLFAHPHVVTSNYKSYENPIEWENDEELLQTWKDGETGYPIV 318
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L +M NR R I SFL +D+ IDWR G EWF L+D+D ++ G W + A
Sbjct: 319 DAGMRQLREEAYMHNRVRMIVASFLTKDLLIDWRHGYEWFREKLVDHDTANDNGGWQWAA 378
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D + R F+ Q ++YD + EY+ ++P+L+ E
Sbjct: 379 STGTDAQPYFRIFNPMTQGEDYDPDAEYIKEYVPELRDAAPE 420
>gi|395005572|ref|ZP_10389447.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316]
gi|394316499|gb|EJE53223.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316]
Length = 487
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 128/460 (27%), Positives = 204/460 (44%), Gaps = 36/460 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR DLR D+ AL A V + D T PK R +F+ L
Sbjct: 9 LVWFRRDLRASDHAALYHALTECRKVHCAFVFD-----TEILDPLPKKD-RRVEFIRASL 62
Query: 144 ADLRKNLMNRGLN----LLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
A+L + L + L++ H + IP+LA G AV+ + + L + VR
Sbjct: 63 AELDERLRTLSGHATGGLIVLHAVASDAIPALAVELGVDAVFTNHDDEPQALARDSRVRT 122
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + + T + +++ T + P+ ++ L V + K +
Sbjct: 123 RLAAAGRAFHTYKDHTVFERGEVLTQTGKPYSVFTPYKNAWLRKVDAFYLKGYPVERHAH 182
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
P + G +VP + L GM GES A ++ +
Sbjct: 183 RLAPRPKAHG--------HAVPPLAALGFEP----AGMALPAGESGAQALFEDF---QQR 227
Query: 320 LKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ Y++ RN + GP Y S L G+ISPR + + +T+ L EL
Sbjct: 228 IGRYEDARNFPAVKGPSY---LSVHLRFGTISPRLLARTAHGLAIKGNQGAATW--LSEL 282
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWS---QDQKLFESWRDGCTGYPLIDANMKEL 434
+WRD++ I + + + H P W + Q+LF +W +G TGYPL+DA M ++
Sbjct: 283 VWRDFYHQILAHHPHVVEHSFKPAYDAIAWESGPEAQELFAAWCEGRTGYPLVDAAMAQI 342
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R + SFLV+D+GIDWR G +F T L D+D +N G W + + G D +
Sbjct: 343 NQTGYMHNRLRMVVASFLVKDLGIDWRWGEAYFATHLNDFDLAANNGGWQWASSSGCDAQ 402
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q++ +D G+++ +LPQL LP + P
Sbjct: 403 PYFRIFNPVSQSEKFDARGQFIRKYLPQLATLPDAALHAP 442
>gi|400602074|gb|EJP69699.1| DNA photolyase [Beauveria bassiana ARSEF 2860]
Length = 587
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 135/494 (27%), Positives = 236/494 (47%), Gaps = 65/494 (13%)
Query: 66 TFGRYTSKALKRNGKGVAIV-WFRNDLRVLDNEAL-LKAWDSSEMVLPVYC---VDPRHS 120
T R T++A+K+ +G A+ WF+ DLR DN +L L A + EM +P+ C V P+
Sbjct: 80 TAQRETAEAMKKAAQGEAVAHWFKTDLRCADNTSLALAAQKAKEMNVPLLCFYLVSPQDF 139
Query: 121 QTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPS----LAKSFG 176
+ H P +R F++ L L+++L + L + + +P+ L +S+G
Sbjct: 140 EA--HLRSP----VRVDFILRTLKVLKEDLAKLDIPLYVETVEERTKVPARVLELLESWG 193
Query: 177 AHAVYAQKETCSEELNVE----RLVRKNLQQ--------VVLSSQSNDKSTNHPQLKLIW 224
+ + A E +EL E RL+ N + VV Q + N + W
Sbjct: 194 CNHLCANLEYEVDELRRETKIIRLLAANSKSFEAVHDTCVVPPGQLRSGTGNQYAVYTPW 253
Query: 225 GTT-MYHLD---DIPFDHSSLPDVYTHFRKSIEA--KCTVRGCIRIPSSFGPPPSVVDWG 278
M H+ D+ H + P RK + +C + P+
Sbjct: 254 YRAWMAHIHSNLDLLELHDAPPKNPASARKRFQKLFECEI-------------PAAPKGK 300
Query: 279 SVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTK 338
++ EQ HS + GE A R++++ ++ + Y + RN + + +
Sbjct: 301 ALSAEEQKRFHS-------LWPCGEHEAKARLDKFC--EERIGGYSQQRN-LPSQNGTAS 350
Query: 339 FSPWLASGSISPRYIYEEVKSYERERVANDSTYWV---LFELMWRDYFRFISLKYGNSLF 395
S LASG+IS R + + + + + + E+ WRD++R + +++ +
Sbjct: 351 ISVHLASGTISARTCVRTARDRNKSKKLDSGHEGIKVWISEIAWRDFYRHVLVRWPH--I 408
Query: 396 HLGGPRKLEY---KWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFL 452
+ P K +Y +WS + + F +W +G TG+P++DA M++L+ G+M NR R + SFL
Sbjct: 409 CMNKPFKPDYADIEWSYNTEHFNAWCEGKTGFPIVDAAMRQLNHMGYMHNRPRMVVASFL 468
Query: 453 VRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDRE 511
+D+ IDWRMG ++F L+D D SN G W + A VG DP+ R F+ +Q++ +D +
Sbjct: 469 CKDLLIDWRMGEKYFMEHLIDGDFASNNGGWGFSASVGVDPQPYFRIFNPLRQSERFDPD 528
Query: 512 GEYVAYWLPQLKAL 525
G+Y+ W+P+LK L
Sbjct: 529 GDYIRQWVPELKDL 542
>gi|402487390|ref|ZP_10834210.1| deoxyribodipyrimidine photo-lyase [Rhizobium sp. CCGE 510]
gi|401813716|gb|EJT06058.1| deoxyribodipyrimidine photo-lyase [Rhizobium sp. CCGE 510]
Length = 483
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 131/465 (28%), Positives = 216/465 (46%), Gaps = 48/465 (10%)
Query: 75 LKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL 134
+ ++ + I+WFR DLR+ DN+A+ A S ++P+Y +P + T GA
Sbjct: 1 MAKDAEKPVILWFRKDLRLDDNQAVDAAHRSGRPIIPLYLREPEAAGTG------ALGAA 54
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
+A +L L L ++L R L++ G E++ +L + GA AV+ + ++++
Sbjct: 55 QAWWLHHSLKALDESLRKRQGRLVLSSGGALEVLCALIRESGAEAVFWNRRYDPSGISID 114
Query: 195 RLVRKNLQQVVLSSQSNDKSTNH-PQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
++ L+Q + ++S H P L + T Y VYT F +++E
Sbjct: 115 SRIKHELEQQAIEARSFGGQLLHEPSLLMTGSGTPYR-------------VYTPFWRALE 161
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLE---LHSPKVSKGMRFVG----GESAA 306
+ P+ ++ +P E+LE L K F GE A
Sbjct: 162 GAGEPGRPVEAPAK------LLLASQLPKSEKLESWNLLPTKPDWAGDFADLWTPGEEGA 215
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
++ + +D L YK+ R+ P ++ SP LA G ISP I++ + A
Sbjct: 216 QEKLGVFV--EDALDGYKQNRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSSRVPA 272
Query: 367 NDSTYWVLFELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGC 421
D ++ E+ WR++ F F L N G ++W D F++W G
Sbjct: 273 TDIVHFRK-EIAWREFSYHLLFHFPRLASANWNDRFDG-----FEWRNDGDDFKAWCRGM 326
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TGYP++DA M++L G+M NR R I SFL++D+ IDWR G WF L+D DP +N
Sbjct: 327 TGYPIVDAGMRQLWRHGWMHNRVRMIVGSFLIKDLMIDWRRGEAWFRDTLVDADPANNAA 386
Query: 482 NWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+W + AG G D R F+ Q + +D +G+YV +P+L+ L
Sbjct: 387 SWQWVAGSGADASPFFRIFNPVLQGETFDPDGDYVRAHVPELQRL 431
>gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001]
gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp.
CCGE1001]
Length = 499
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 129/461 (27%), Positives = 208/461 (45%), Gaps = 32/461 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTT---YHFGFPKTGAL--RA 136
+VWFR DLR DN AL A E V V+ D Q + P T A R
Sbjct: 13 TGLVWFRRDLRTTDNAALYYALKHCERVWCVFVFDTTILQPLVDRWQTRHPGTQAQDRRV 72
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
+F++ L +L + L +G L++ +G P +++P LA AV+ + + +
Sbjct: 73 EFILGSLRELDEALRAQGGGLVVLYGDPADLVPKLADQLQVDAVFINHDYEPAAIERDEA 132
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
VR+ L + + + + +L+ G P+ ++ L + + K +
Sbjct: 133 VRERLAETGRTFLTFKDQVIFERAELLTGQKKPFTVFTPYKNAWLKQLTSFDLKPYPVET 192
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
+P + +P +EQL +P + G A ++++ +
Sbjct: 193 YATRLASLPPALD--------RQLPTLEQLGF-APGNLAELDLPTGMRGAQRLLDDFLTR 243
Query: 317 KDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
D Y E R+ + GP Y S L G++S R + + + W L
Sbjct: 244 LD---SYAERRDFPAVKGPSY---LSVHLRFGTVSIRTLARLAHEMSLQPDGRGAATW-L 296
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQD---QKLFESWRDGCTGYPLID 428
EL+WRD++ F+ L + L G K EY +W Q F +W +G TGYPLID
Sbjct: 297 SELIWRDFY-FMILAHHPRLAG-GASFKEEYDRLRWEQGPEADAAFAAWCEGRTGYPLID 354
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M +L+ TG+M NR R + SFLV+D+G+DWR+G +F L DYD +N G W + A
Sbjct: 355 AAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAAS 414
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D + R F+ Q++ +D +G ++ +LPQL LP +
Sbjct: 415 TGCDAQPYFRIFNPITQSEKFDADGRFIKRYLPQLGKLPAK 455
>gi|379707822|ref|YP_005263027.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia cyriacigeorgica
GUH-2]
gi|374845321|emb|CCF62385.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia cyriacigeorgica
GUH-2]
Length = 442
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 137/454 (30%), Positives = 199/454 (43%), Gaps = 56/454 (12%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+I F DLR+ DN L A D V+P++ D FG P R +FL+
Sbjct: 8 SIALFTRDLRIHDNPVLAAASDHGSPVIPLFVAD---DAILTRFGAPN----RIRFLLAA 60
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA+L L RG +L++R G LA+ GA V+ + + R +R L
Sbjct: 61 LAELDDELHRRGSHLVLRRGDTVTETARLAREAGATDVHLAADVSAYSARRARRLRAELT 120
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPD---VYT-HFRKSIEAKCTV 258
+ L + G T+ +D S D V+T +FR+ E
Sbjct: 121 ECRLH---------------LHGETITAVDPAALRPSGGGDHFAVFTPYFRRWTETH--R 163
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLEL----HSPKVSKGMRFVGGESAALGRVNEYF 314
R I P G P D PL + +L SP +S VGGES GR
Sbjct: 164 RDPIPAPRKLGTFPVPTD----PLPDAADLCDGPGSPHLS-----VGGEST--GRKLLRQ 212
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
W + Y ++ L D ++ SP+L G +SP + V DS
Sbjct: 213 WVSHGIHDYDRL-SDALDADATSHLSPYLHFGCLSPAQVLAAVDP--------DSGGGHA 263
Query: 375 F--ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
F +L WRD+ + ++ + PR++ W D E+W+ G TG P++DA M+
Sbjct: 264 FARQLAWRDFHHQVLAARPDAAWSDYRPRRI--TWRTDPHAVEAWQQGRTGLPIVDAGMR 321
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L G+M R R IA SFL + + IDWR+GA F L+D D +N NW + AG G D
Sbjct: 322 QLRAEGWMPGRARLIAASFLTKSLRIDWRIGARHFLHWLVDGDLANNQLNWQWAAGTGTD 381
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R +R + +QA +D G+YV W+P+L LP
Sbjct: 382 TRPNRVLNPLRQAARFDPGGDYVRRWIPELAELP 415
>gi|443625802|ref|ZP_21110240.1| putative Deoxyribodipyrimidine photo-lyase [Streptomyces
viridochromogenes Tue57]
gi|443340760|gb|ELS54964.1| putative Deoxyribodipyrimidine photo-lyase [Streptomyces
viridochromogenes Tue57]
Length = 461
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 209/452 (46%), Gaps = 49/452 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGAL---RAQF 138
V++ F DLRV DN L+ A SE V+P++ VD G +TG + RA F
Sbjct: 3 VSVALFTADLRVHDNPVLVAALKGSEYVVPLFVVD---------TGMRRTGFVVPNRAAF 53
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L + LADL L RG L++R G E +A GA V+ T + E +R
Sbjct: 54 LADSLADLDSALRARGGRLVVRVGDVVEETCRVAAETGAAVVHIAGGTSRYAVRREDRLR 113
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
L + +D S + L DH + V+T + + E +V
Sbjct: 114 AELAGDRRGLRVHDAS--------VTAVPPGALTPAGKDHFA---VFTPYFRRWEG-FSV 161
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELH-----SPKVSKGMRFVGGESAALGRVNEY 313
RG + P P VV VP + L +P + GGES A R+
Sbjct: 162 RGVL-------PAPDVV---PVPDVRSARLPRGRSIAPGPTSPALPTGGESEARRRLRS- 210
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
W L Y + +++ D +++ SP+L G +SP + ++ + N +
Sbjct: 211 -WLSGPLAAYDDHHDDLAA-DATSRLSPYLHFGCLSPTELLHRARAQD-----NPGAHAF 263
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
+ +L WRD+ + ++ + PR+ ++ + ++ +W++G TGYP++DA +++
Sbjct: 264 VRQLAWRDFHHQVLAARPDAATYDYRPRRDHWRHAPEET--AAWQEGRTGYPVVDAALRQ 321
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L G+M R R +A SFL + + +DWR+GA F L+D D +N NW + AG G D
Sbjct: 322 LRHEGWMPGRARLLAASFLTKTLYVDWRVGARHFLDLLVDGDIANNQLNWQWVAGTGTDT 381
Query: 494 REDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R +R + QA+ +D G+YV WLP+L+ L
Sbjct: 382 RPNRVLNPLTQARRHDPHGDYVRRWLPELRHL 413
>gi|383771224|ref|YP_005450289.1| DNA photolyase [Bradyrhizobium sp. S23321]
gi|381359347|dbj|BAL76177.1| DNA photolyase [Bradyrhizobium sp. S23321]
Length = 479
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 128/458 (27%), Positives = 206/458 (44%), Gaps = 47/458 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR+DLR+ D+ AL A + V+ +Y +D + +L + L
Sbjct: 8 IVWFRDDLRLSDHPALHAAAKTGAPVICLYVLDDAAGRAPG--------GAARWWLAQSL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L ++ RG +L++R G +IP +A++ GA AVY + + +VE+ + L +
Sbjct: 60 RALGADIRRRGGSLILRKGPAAGVIPEVARAIGATAVYWNEVAQAPHQSVEKALEAALAK 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ + S + G + I V+T F + + A +
Sbjct: 120 LGIDSH------------IFPGDLLVAPSAIRNKEGRGLRVFTPFWRRVLALGDPPKPLP 167
Query: 264 IPSSFGPPPSVVDWGSVPLIE--QLELHSPKVSKGMR--FVGGESAALGRVNEYFWKKDL 319
P P + + +E +LE P + G+R + GE++A R+ ++ K
Sbjct: 168 APKELRAGPKI----TSDALESWKLEPSKPDWAGGLRESWEPGEASARTRLRDFL--KHT 221
Query: 320 LKVYKETRNEMLGPDY--STKFSPWLASGSISPRYIYEEVKSYERERVA-NDSTYWVLFE 376
Y R+ PD ++ SP L G +SPR ++ + E A L E
Sbjct: 222 AHSYAGDRDR---PDRKGTSSLSPHLRFGELSPRQVWHAARFAAAENPAIGPGVEKFLSE 278
Query: 377 LMWRDYFRFI-----SLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
L WR++ R + L N + G + W D+ +W+ G TGYP++DA +
Sbjct: 279 LGWREFCRHLLHDHPDLATVNLQANFDG-----FPWKPDKTALAAWQRGRTGYPIVDAGL 333
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TG M NR R + SFLV+ + IDWR+G WF L+D D SN NW + AG G
Sbjct: 334 RELWHTGVMHNRVRMVVASFLVKHLLIDWRVGESWFWDTLVDADAGSNPANWQWVAGCGA 393
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
D R F+ Q + +D +G YV W+P+LK +P +
Sbjct: 394 DAAPYFRVFNPQLQGEKFDPDGTYVRRWVPELKDMPAK 431
>gi|307315377|ref|ZP_07594947.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
gi|378713928|ref|YP_005278821.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KO11FL]
gi|386608033|ref|YP_006123519.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli W]
gi|386702523|ref|YP_006166360.1| deoxyribodipyrimidine photolyase [Escherichia coli KO11FL]
gi|386708475|ref|YP_006172196.1| deoxyribodipyrimidine photolyase [Escherichia coli W]
gi|306905271|gb|EFN35815.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
gi|315059950|gb|ADT74277.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli W]
gi|323379489|gb|ADX51757.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli KO11FL]
gi|383394050|gb|AFH19008.1| deoxyribodipyrimidine photolyase [Escherichia coli KO11FL]
gi|383404167|gb|AFH10410.1| deoxyribodipyrimidine photolyase [Escherichia coli W]
Length = 472
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 221/460 (48%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|448666718|ref|ZP_21685363.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
gi|445771849|gb|EMA22905.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
Length = 465
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 122/453 (26%), Positives = 212/453 (46%), Gaps = 47/453 (10%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
W R DLR DN A L A S+ V+PV+ D H G P R F+++ L
Sbjct: 5 WHRRDLRATDN-AGLAAATPSDPVVPVFVFD---RAVLDHAGPP-----RVAFMLDALDS 55
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LR+ +RG +L++ G P +IP LA +G V K+ + +VR+ L
Sbjct: 56 LREWYRDRGSDLVVARGDPTAVIPDLAVEYGVDTVTWGKDYSGLARERDAVVRQALDDAD 115
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF-RKSIEAKCTVRGCIRI 264
++ ++ + H ++ TT D P+ V+T+F RK + + T
Sbjct: 116 VAREAVQNAVLHEPGEI---TTN---DGDPYS------VFTYFGRKWHDREKT------- 156
Query: 265 PSSFGPPPSV----VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ + PP + VD ++P + L P+ G A ++++ +
Sbjct: 157 -APYEPPSADELADVDGDALPTLADLGFDEPEADVP---AAGTDEARALLDDFLDEN--- 209
Query: 321 KVYK-ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND---STYWVLFE 376
VY+ E R + + +++ S L G+I R +Y+ + +E D S +
Sbjct: 210 -VYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRTED-AKEGTGGDRRESVREFQSQ 267
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
L WR+++ + + + + + +W D++L ++W+DG TGYP++DA M++L
Sbjct: 268 LAWREFYTQVLFAHPHVVSSNYKSYENPIEWENDEELLQAWKDGETGYPIVDAGMRQLRE 327
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
+M NR R I SFL +D+ +DWR G EWF L+D+D ++ G W + A G D +
Sbjct: 328 EAYMHNRVRMIVASFLTKDLLVDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPY 387
Query: 497 -RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q ++YD + EY+ ++P+L+ E
Sbjct: 388 FRIFNPMTQGEDYDPDAEYIKEYVPELRDAAPE 420
>gi|372221339|ref|ZP_09499760.1| deoxyribodipyrimidine photo-lyase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 436
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/443 (26%), Positives = 203/443 (45%), Gaps = 41/443 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
++I WFR DLR+ DN L +A +LP++ D PK A R F+ E
Sbjct: 5 ISIFWFRRDLRLEDNVGLYQALSGDYPILPIFIFDKEILD-----NLPKDDA-RVTFIFE 58
Query: 142 CLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
L +RK L ++ +L I + P+ + L + V+ + + V++
Sbjct: 59 TLQQMRKTLQDKVDSSLAIFYDTPKTVFKKLVDDYNIETVFTNHDYEPYAKQRDTAVKEF 118
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L+ DK N K ++ D++ + VYT + K
Sbjct: 119 LE---------DKGINFKTFK---DQVIFEKDEVVKNDGDPYVVYTPYMK---------- 156
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
+ +F P +V++ S + HS + + +G E + + + +Y + L+
Sbjct: 157 --KWKETFNPSKDLVNYDSEKNFDSYVKHSRLPNLSLSDMGFEKSNI-EIPDYLTTQHLI 213
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
Y++TRN + +++ P L G++S R + VK E+ + T+W EL+WR
Sbjct: 214 ANYEDTRNYPYLKNGTSRLGPHLRFGTVSVRKM---VKKATEEK---NETFWN--ELIWR 265
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
++F I Y ++ + + W +++ FE W+ G TGY L+DA M++L+ TG+M
Sbjct: 266 EFFMQILYHYPKTVNNAFREKYDRINWRNNEEEFEKWKAGKTGYALVDAGMRQLNKTGYM 325
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYF 499
NR R + SFL + + IDWR G +F LLDY+ SN GNW + AG G D R F
Sbjct: 326 HNRVRMLVASFLCKHLLIDWRWGEAYFAEKLLDYEMASNVGNWQWAAGSGVDAAPYFRIF 385
Query: 500 SIPKQAQNYDREGEYVAYWLPQL 522
+ Q +D++ +Y+ W+ +
Sbjct: 386 NPMTQVDKFDKDKKYINRWVTDI 408
>gi|417128682|ref|ZP_11975469.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0246]
gi|386143638|gb|EIG90114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0246]
Length = 472
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 133/464 (28%), Positives = 224/464 (48%), Gaps = 48/464 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R EII + A++ H Y + +E +++VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVDVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R VL +D P + MY + PF ++ L R+ +
Sbjct: 119 RALRN-----VLCEGFDDSVILPPGAVMTGNHEMYKVF-TPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L EL+WR+++R + Y + H + +++ W + ++W+ G TGYP++DA
Sbjct: 273 LSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIVDAA 330
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 331 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTG 390
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 391 TDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
Length = 476
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 128/456 (28%), Positives = 214/456 (46%), Gaps = 33/456 (7%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A S ++ ++C+DP R +LI
Sbjct: 4 LILFWHRRDLRISDNIGLSAARQKSPKIVGIFCLDPNILNKD------DVAPARVTYLIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL +L++ G LLI G+P + IP LA + A AV+ + N + V L
Sbjct: 58 CLQELQQQYQQAGSQLLILRGEPSQAIPRLAATLKASAVFWNLDVEPYAKNRDEQVINVL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS--IEAKCTVR 259
Q+ ++ ++ H +L+ + Y+ PF + ++ +K ++ ++
Sbjct: 118 QEKGIARENFWDQLLHAPGQLVTQSKDYYKVFTPFWRN-----WSKLKKQSPLQKLEGLK 172
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQL--ELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
G + V+D +P ++L +P + GE+AA R+ E+
Sbjct: 173 GLTEEELTLTINAGVID---LPTAKKLGYAWENP-----LLLDPGETAAKKRLEEFC--S 222
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDSTYWVL 374
+ Y+E RN D +++ S L G+I R +++ EV R A S
Sbjct: 223 SAINEYQEQRN-FPAVDGTSRLSAALKFGAIGIRTVWKATLEVYENSRSDEARKSIETWQ 281
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRK--LEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL WR++++ Y G RK + W ++ F++W +G TGYP++DA M+
Sbjct: 282 QELAWREFYQ--HCMYFFPELAEGSYRKDFRSFPWQNNEDYFQAWCEGKTGYPIVDAAMR 339
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ T +M NR R I SFL +D+ I+W+ G ++F L D D +N G W + A G D
Sbjct: 340 QLNETAWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMD 399
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
P+ R F+ QAQ +D EGEY+ WLP+L+++ E
Sbjct: 400 PKPLRIFNPASQAQKFDPEGEYIRQWLPELRSVDTE 435
>gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
Length = 472
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 121/466 (25%), Positives = 214/466 (45%), Gaps = 51/466 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
I WFR DLR+ DN AL++A S++ ++P+Y +D + G + +L
Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSADHLIPLYILDDQ---------LKMLGDAQRWWLHH 52
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L+ L+ L +G +L+++ G + ++ L K + +Y + ++ + L
Sbjct: 53 SLSSLQTALSKKGTSLILKKGDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRL 112
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ +++ T + I ++T F K I A R
Sbjct: 113 PPL--------------SVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKT 158
Query: 262 IRIPSSFGPPPSVVD-----WGSVPLIEQLELHSPKVSKGM-RFVGGESAALGRVNEYFW 315
+ P F ++ W +P P S+G ++ GE A + ++
Sbjct: 159 LAAPKKFSQHRAIKSDNLETWNLLP-------KHPDWSQGFDQWKPGEKNAQIVLKKFI- 210
Query: 316 KKDLLKVYKETRNEMLGPDYSTK--FSPWLASGSISPRYIYEEV-KSYERERVANDSTYW 372
K+ LK Y R+ PD S+ SP+L G IS R ++ + ++ +++ +
Sbjct: 211 -KENLKNYPAHRDR---PDISSTSHLSPYLHFGEISIRQVWTAITQATIQDKNLQKAADV 266
Query: 373 VLFELMWRDYFRFISLKY---GNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L +L+WR++ ++ + G S F + +KW +++ +W+ G TGYP++DA
Sbjct: 267 FLRQLIWREFAYYLLWHFPQMGRSNFR---NQFDNFKWKKNKNWLRAWQKGLTGYPIVDA 323
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M+EL TG+M NR R I SFLV+D+ IDWR G +WF LLD D +N W + AG
Sbjct: 324 GMRELWCTGYMHNRVRMIVASFLVKDLMIDWREGEKWFWNTLLDADLANNALGWQWIAGC 383
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPG 534
G D R F+ Q++ +D +G Y+ W+P+L +P + ++P
Sbjct: 384 GPDAAPYFRIFNPILQSKKFDPDGTYIKRWIPELAKVPSKYIHYPA 429
>gi|260853943|ref|YP_003227834.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
11368]
gi|415789825|ref|ZP_11494736.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14]
gi|417294504|ref|ZP_12081778.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 900105 (10e)]
gi|419207874|ref|ZP_13750999.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8C]
gi|419214311|ref|ZP_13757339.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8D]
gi|419225421|ref|ZP_13768308.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9A]
gi|419231285|ref|ZP_13774075.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9B]
gi|419236591|ref|ZP_13779340.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9C]
gi|419242166|ref|ZP_13784814.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9D]
gi|419253376|ref|ZP_13795921.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10A]
gi|419259425|ref|ZP_13801877.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10B]
gi|419265422|ref|ZP_13807807.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10C]
gi|419271099|ref|ZP_13813427.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10D]
gi|419282623|ref|ZP_13824839.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10F]
gi|419879000|ref|ZP_14400452.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9534]
gi|419881262|ref|ZP_14402597.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9545]
gi|419904183|ref|ZP_14423188.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9942]
gi|419906819|ref|ZP_14425687.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10026]
gi|420101941|ref|ZP_14612988.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9455]
gi|420109394|ref|ZP_14619538.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9553]
gi|420112587|ref|ZP_14622384.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10021]
gi|420121952|ref|ZP_14630984.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10030]
gi|420126811|ref|ZP_14635513.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10224]
gi|420134473|ref|ZP_14642579.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9952]
gi|424748500|ref|ZP_18176643.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424759470|ref|ZP_18187135.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425377578|ref|ZP_18761958.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EC1865]
gi|257752592|dbj|BAI24094.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O26:H11 str. 11368]
gi|323153779|gb|EFZ40026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14]
gi|378061864|gb|EHW24044.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8C]
gi|378067633|gb|EHW29746.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8D]
gi|378081009|gb|EHW42965.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9A]
gi|378081731|gb|EHW43680.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9B]
gi|378089814|gb|EHW51655.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9C]
gi|378094429|gb|EHW56227.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9D]
gi|378106210|gb|EHW67841.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10A]
gi|378115368|gb|EHW76908.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10B]
gi|378118196|gb|EHW79702.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10C]
gi|378121121|gb|EHW82579.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10D]
gi|378138593|gb|EHW99846.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10F]
gi|386262219|gb|EIJ17666.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 900105 (10e)]
gi|388333213|gb|EIK99850.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9534]
gi|388365745|gb|EIL29522.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9545]
gi|388368135|gb|EIL31785.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9942]
gi|388378192|gb|EIL40950.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10026]
gi|394390868|gb|EJE67797.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10224]
gi|394406905|gb|EJE81818.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9553]
gi|394413302|gb|EJE87344.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9455]
gi|394414257|gb|EJE88206.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10021]
gi|394421411|gb|EJE94883.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9952]
gi|394424170|gb|EJE97344.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10030]
gi|408309331|gb|EKJ26525.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EC1865]
gi|421944397|gb|EKU01651.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421947289|gb|EKU04368.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CFSAN001630]
Length = 472
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 130/466 (27%), Positives = 221/466 (47%), Gaps = 52/466 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R E + A++ H Y + +E ++ VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVE 118
Query: 195 RLVR----KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 250
R +R + V+ K+ NH K+ PF ++ L R+
Sbjct: 119 RALRNVVCEGFDDSVILPPGAVKTGNHEMYKVF----------TPFKNAWL----KRLRE 164
Query: 251 SIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGR 309
+ +C +R S P PS+ L+ P+ S F E AA+ +
Sbjct: 165 GM-PECVAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQ 211
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ ++ ++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 212 LRQFC--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGA 268
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLID 428
L EL+WR+++R + Y + H + +W + ++W++G TGYP++D
Sbjct: 269 GSVWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVD 328
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 329 AAMRQLNSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS 388
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G D R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 389 TGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
Length = 428
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 128/443 (28%), Positives = 211/443 (47%), Gaps = 45/443 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I WFR DLR+ DN L A +S+E VLP++ D PK A R F+ E L
Sbjct: 3 IFWFRRDLRLEDNVGLFHALNSTEDVLPIFIFDSEILSQ-----LPKDDA-RVSFIHEQL 56
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
++ L G +L + HGKP EI L +VY + E RK ++
Sbjct: 57 EKIQSELNKIGKSLAVFHGKPIEIFTQLISENTITSVYTNHD-------YEPYARKRDKE 109
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ +N S + ++I + ++ D S VYT F K +
Sbjct: 110 MNQLFTTNGISFLTSKDQVI-----FEKSEVVKDDGSPYVVYTPFSKKWKENFK------ 158
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHS-PKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
+V + S ++++ HS P +S + +G E + + +V+ + ++L++
Sbjct: 159 -------KIKLVHYTSEDKLDKVAKHSYPFLS--LTDIGFEKSNI-KVSAFDVSENLIQN 208
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
Y+ TRN + ++ +L G++S R K + + T+W EL+WR++
Sbjct: 209 YEATRN-FPALNKTSYLGIYLRFGAVSIR------KMIAKAIAEKNDTFWN--ELIWREF 259
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F I + ++ P+ W+ +++LF+ W +G TGYP +DA M+EL+ TG M N
Sbjct: 260 FMQILWHFPHTYNSSFRPKYDGIVWNNNEELFQKWCEGKTGYPFVDAGMRELNSTGHMHN 319
Query: 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSI 501
R R I SFL + + IDWR G +F LLDY+ SN GNW + AG G D R F+
Sbjct: 320 RVRMIVASFLCKHLLIDWRWGETYFAQKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNP 379
Query: 502 PKQAQNYDREGEYVAYWLPQLKA 524
+Q + +D++ +Y+ W+P+L+
Sbjct: 380 TEQIKKFDKDLKYIKKWIPELET 402
>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
Length = 537
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 130/462 (28%), Positives = 217/462 (46%), Gaps = 33/462 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ---TTYHFGFPKTGALRAQFL 139
+++WFR LRV DN AL A S+ V PV+ +DP + + + G + G R +FL
Sbjct: 8 SLMWFRKGLRVHDNPALDYASKGSKFVYPVFVIDPHYMEPDPNAFSPGSSRAGINRIRFL 67
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+E L DL +L G LL+ G+P +++ K + + + +T S ++ V++
Sbjct: 68 LESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYDTDSYYQALDAKVKE 127
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDV-YTHFRKSIEAKCTV 258
+ S +H T+++ DI + P + Y F K A
Sbjct: 128 YASSARIEVFS---PVSH---------TLFNPADIIQKNGGKPPLSYQSFLKV--AGQPS 173
Query: 259 RGCIRIPSSFGPPPSVVDWGS-----VPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
+P++ P V D GS VP +E+L + + F GGES AL R+ E
Sbjct: 174 WASSPLPTTISSLPPVGDVGSCEISEVPTLEELGYGDVEQDEWAPFRGGESEALKRLREK 233
Query: 314 FWKKDLLKVYKETRNE---MLGPDYSTKFSPWLASGSISPRYIYEEVKS-YERERVANDS 369
K+ + +++ + + + P +T SP+L G +S RY Y+ ++ Y+
Sbjct: 234 ITNKEWVANFEKPKGDPSAFMKPA-TTVLSPYLKFGCLSSRYFYQCLQDVYKNVGKHTSP 292
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
+L +L+WRD+ F ++ +G F ++ + W++D +L +WR+ TGYP I
Sbjct: 293 PVSLLGQLLWRDF--FYTVAFGTPNFDQMKENRICKQIPWNEDDELLSAWREARTGYPWI 350
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
DA M +L G+M + R FL R D+ + W G FE L+D D N GNW +
Sbjct: 351 DAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRNVFERLLIDSDWAINNGNWLWL 410
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
+ + +R +S + YD G Y+ ++LP LK +PKE
Sbjct: 411 SCSSFFYQYNRIYSPISFGKKYDPNGNYIKHFLPVLKDMPKE 452
>gi|191167217|ref|ZP_03029036.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
gi|309797420|ref|ZP_07691812.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
gi|190902765|gb|EDV62495.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
gi|308118944|gb|EFO56206.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
Length = 472
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 221/460 (48%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|409123337|ref|ZP_11222732.1| deoxyribodipyrimidine photolyase [Gillisia sp. CBA3202]
Length = 432
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 124/447 (27%), Positives = 205/447 (45%), Gaps = 50/447 (11%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
K V+I WFR DLR+ DN LL+A VLP++ D PK A R F+
Sbjct: 3 KKVSIFWFRRDLRLDDNVGLLEALKGDFPVLPIFIFDSEILD-----DLPKNDA-RLSFI 56
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE----TCSEELNVER 195
+ L ++RK L + G +L + GKP I L + ++ ++ + +E+
Sbjct: 57 FDTLQNIRKELQSSGSSLAMFFGKPAAIFKDLFDQYDVQKIFTNRDYEPYAKQRDEKIEK 116
Query: 196 LVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK 255
L S N+ + ++ D++ VYT + K +
Sbjct: 117 LA----------------SDNNSEFLTFKDQVIFEKDEVVKSDGDPYVVYTPYMKLWK-- 158
Query: 256 CTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
F V + S L + L+ +S + + +G ES++ +V +Y
Sbjct: 159 ----------EEFKKIDLKVQYTSQYLDKFLQ-NSRLPNLSLSDIGFESSS-QKVPDYDV 206
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
L++ Y+ RN D ++ P L G++ R I ++ + + E +W
Sbjct: 207 TPSLIQDYEAKRN-YPAKDATSHIGPHLRFGTVGIRKIMKKAIAEKNE------VFWQ-- 257
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
EL+WR++F I + N+ + W +++ FE W+ G TGYP++DA M++L+
Sbjct: 258 ELIWREFFMQILYHFPNTATDAFKKKYDRISWRNNKEEFEKWKSGTTGYPMVDAGMRQLN 317
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
+GFM NR R + SFL + + IDWR G +F LLDY+ SN GNW + AG G D
Sbjct: 318 ESGFMHNRVRMLVGSFLCKHLLIDWRWGEAYFAEKLLDYEMASNVGNWQWVAGSGVDAAP 377
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQ 521
R F+ QA++YD++ EY+ W+P+
Sbjct: 378 YFRIFNPTTQAKDYDKDLEYIKKWIPE 404
>gi|50120288|ref|YP_049455.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
SCRI1043]
gi|49610814|emb|CAG74259.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
SCRI1043]
Length = 497
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 139/480 (28%), Positives = 223/480 (46%), Gaps = 51/480 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN AL A D S VL V+ P +Q H P+ A FL+E
Sbjct: 14 VVWLRNDLRITDNLALYAACQDPSATVLAVFIATP--AQWEKHDMAPRQAA----FLLEN 67
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
L ++ L +G+ L + ++ A+ Y + +E L ++ V
Sbjct: 68 LTLVQHVLAEKGIPLHYHECADFAASVDWLMQFCAEQQATDLFYNHQYEINERLR-DKQV 126
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS-----I 252
+ L V+ +D P L MY V+T FR++ +
Sbjct: 127 KDRLADSVVCHGYHDSLLLPPGSVLTGNGEMY-------------KVFTPFRQAFIKRLL 173
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPL-IEQLELHSPKVSKGMRFVGGESAALGRVN 311
EA T C+ P + G P + VP Q E+ S F GE AAL ++
Sbjct: 174 EADTT---CVPAPDARGEPINNTA-ELVPFSYPQCEVDSED------FPCGERAALQQLR 223
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY---ERERVAND 368
+ ++ ++ Y + R+ P ++K SP+LA G +SPR + +++ ER
Sbjct: 224 RFC--REQVQDYDQQRDFPALPG-TSKLSPYLALGIVSPRQCFNRLRAECPDMLERREGG 280
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPLI 427
+ W EL+WR+++R + + + H ++ KW + + +W+ G TGYP++
Sbjct: 281 AFTW-FNELVWREFYRHLIVSWPQLCKHRPFTAWTQWVKWRESPEDLTAWQQGKTGYPIV 339
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M +L+ TG+M NR R I SFLV+D+ IDWR G +F + LLD D +N G W + A
Sbjct: 340 DAAMHQLNETGWMHNRLRMICASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAA 399
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKH 546
G D R F+ Q + +D +G ++ +WLP+L A+P + + P +Q V L +
Sbjct: 400 STGTDAAPYFRIFNPTTQGERFDPDGRFIRHWLPELAAVPDKDIHQPHRWADKQHVKLNY 459
>gi|432749144|ref|ZP_19983759.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE29]
gi|431299336|gb|ELF88908.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE29]
Length = 472
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 221/460 (48%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|311280415|ref|YP_003942646.1| deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1]
gi|308749610|gb|ADO49362.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1]
Length = 471
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 128/460 (27%), Positives = 219/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGA-LRAQFLIE 141
+VWFR DLR+ DN AL A DS VL ++ P Q H P+ A ++AQ
Sbjct: 5 LVWFRADLRLHDNLALAAACRDSYAKVLALFIATP--GQWRQHRMAPRQAAYIQAQ---- 58
Query: 142 CLADLRKNLMNRGLNLLIRHGK----PEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
L DL++NL ++G+ LL+R + ++I + ++Y + E + V
Sbjct: 59 -LNDLQRNLADKGIPLLLREAEDFAASAQVIRQVCNEHKVSSLYYNYQYELNERRRDARV 117
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
K L+ V+ Q D S ++ G + PF ++ L + K
Sbjct: 118 EKALKDVL--CQGFDDSVMLAPGSVMTGDRQMYKVFTPFKNAYLKRL----------KEG 165
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFWK 316
+ C+R PS V + G++ + + L+L+ P+ F E +A+ R+ ++ +
Sbjct: 166 LPECVRAPS-------VREEGAIKVCQPLKLNYPQTPFDPDLFPADEKSAIARLRQFCQQ 218
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
+ E + + + +++ S L G +SPR + + + + L E
Sbjct: 219 Q---AAEYEQKRDFPAMEGTSRLSCCLTVGVLSPRQCLRRLLAECSGALEGGAGSVWLNE 275
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
L+WR+++R + + + L K KW +D +W+ G TGYP++DA M++L
Sbjct: 276 LIWREFYRHL-MTFHPELCRFKPFIKWTDNVKWCEDHTRLNAWQRGQTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NDTGWMHNRLRMIVASFLVKDLLIDWREGERYFMSQLVDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +D++GE++ WLP+LK +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDKQGEFIRRWLPELKDVPDKALHSP 434
>gi|443310722|ref|ZP_21040364.1| deoxyribodipyrimidine photolyase [Synechocystis sp. PCC 7509]
gi|442779247|gb|ELR89498.1| deoxyribodipyrimidine photolyase [Synechocystis sp. PCC 7509]
Length = 476
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 121/461 (26%), Positives = 215/461 (46%), Gaps = 42/461 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A + S+ V+ V+C+DP + +R +++
Sbjct: 4 LILFWHRRDLRLSDNTGLAIAREHSQKVVGVFCLDPNILERD------DVAPVRVTYMMG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L++ G LLI G P + IP+LA+ A V+ + +R V L
Sbjct: 58 CLQHLQQRYTEVGSELLIIKGNPTQAIPALAEILNARGVFWNWDVEPYSQTRDRAVIDAL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS---------I 252
Q + + W ++ +DI ++ VY+ F ++ +
Sbjct: 118 QAKGIEFIEKN-----------WDQLLHSPEDIRTGSNTPYTVYSPFWRNWLSKPKAEPV 166
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
A + G + V+ ++P + L + + GE+AA ++ E
Sbjct: 167 AALKDLTGLTAAEKNLAIKAGVI---ALPTAKDLGFN---WENELVIAPGETAATQKLEE 220
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK-SYERERVANDSTY 371
+ + + YKE RN + +++ S L G I R ++ K + E R +T
Sbjct: 221 FTYLA--INEYKEQRN-FPAVNGTSQLSAALKFGVIGIRTVWAATKEALENSRSDETNTS 277
Query: 372 WVLF--ELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
V + EL WR++++ Y G R++ + + ++K F++W +G TGYP++
Sbjct: 278 IVGWQQELAWREFYQ--HAMYNFPELETGAYREVFKNFPYDNNEKYFQAWCEGKTGYPIV 335
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++++ G+M NR R I SFL +D+ I+ ++G ++F L+D D +N G W + A
Sbjct: 336 DAAMRQMNELGWMHNRCRMIVASFLTKDLIINPQLGEKYFYQHLIDGDLSANNGGWQWSA 395
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G DP+ R F+ QAQ +D EG+Y+ WLP+L+++ E
Sbjct: 396 SSGMDPKPIRIFNPASQAQKFDPEGDYIREWLPELRSVDTE 436
>gi|427718644|ref|YP_007066638.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 7507]
gi|427351080|gb|AFY33804.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 7507]
Length = 495
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 126/460 (27%), Positives = 210/460 (45%), Gaps = 44/460 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A S V+ V+C+DP + +R ++I CL
Sbjct: 23 LFWHRRDLRISDNTGLTAARRQSPKVVGVFCLDPHILERD------DVAPVRVTYMIGCL 76
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL-- 201
L++ G LLI H P IP+LA++ A AV+ + +R V L
Sbjct: 77 QALQQRYAEAGSQLLILHADPVVAIPALAEALNAKAVFWNWDVEPYSQERDRTVIDALKE 136
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
Q + Q+ D+ N P D+I +S VYT F K+ +K +
Sbjct: 137 QGIAFLQQNWDQILNAP-------------DEIRTGGNSPYTVYTPFWKNWSSKPKAQPA 183
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV--------GGESAALGRVNEY 313
+ ++ G + + +++ +K + F+ GE+AA + E+
Sbjct: 184 QTLQNAEG-----LTADEQEIAKKVGAQPLPTAKDLGFIWDGELIIAPGEAAARSLLEEF 238
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE---EVKSYERERVANDST 370
+ Y+E RN + ++K S L G+I R +++ E R A
Sbjct: 239 C--ASSINEYQEQRN-FPAIEGTSKLSAALKFGAIGIRTVWQATLEALENSRSDEAKAGI 295
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLID 428
EL WR++++ Y G R+ + W + + F++W +G TGYP++D
Sbjct: 296 RTWQQELAWREFYQHA--MYNFPELADGAYRETFKNFPWENNTEKFQAWCEGNTGYPIVD 353
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++++ +G+M NR R I SFL +D+ I+ + G ++F L+D D +N G W + A
Sbjct: 354 AAMRQMNESGWMHNRCRMIVASFLTKDLLINPQWGEKYFMQQLIDGDLSANNGGWQWSAS 413
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G DP+ R F+ QAQ +D EGEY+ W+ +L++L E
Sbjct: 414 SGMDPKPLRIFNPASQAQKFDAEGEYIRQWVQELRSLDTE 453
>gi|410694724|ref|YP_003625346.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
gi|294341149|emb|CAZ89550.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
Length = 497
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 123/470 (26%), Positives = 213/470 (45%), Gaps = 50/470 (10%)
Query: 69 RYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGF 128
R S A+++ G +VW R DLR+ DN AL A + + V + D G
Sbjct: 8 RSASSAVEKLPLG--LVWLRRDLRLHDNAALHAALRACDKVALAFVFDRDILDPLLQRGL 65
Query: 129 PKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCS 188
R +F++ +A++ L G L++RH E IP+LA GA V+ ++
Sbjct: 66 --QADRRVEFILAAVAEIDAALREHGAALIVRHASAREAIPALAAELGAQTVFCGRDDEP 123
Query: 189 EELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF 248
E L + V + L+Q + L+ + ++ D++ V+T +
Sbjct: 124 EALARDAAVERALRQ------------DGRALRTVKEHMIFERDEVLTAQGKPYSVFTPY 171
Query: 249 RKSIEAKCTVRGCIRIPSSFG-------------PPPSVVDWGSVPLIEQLELHSPKVSK 295
R + A+ + + S+ P P++ + G P LH+ K+
Sbjct: 172 RTAWLARYAAQPQQPVDSAVTSARLAALPAALRQPLPTLSELGFAPS----NLHALKLPL 227
Query: 296 GMRFVGGESAALGRVNEYFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYI 353
G S A V+++ + D Y + R+ GP Y S L G++S R +
Sbjct: 228 GA------SGAAALVDDFSRRID---DYDQARDYPARKGPSY---LSVHLRFGTVSVREL 275
Query: 354 YEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKL 413
++ R++ ++ L EL+WRD++ I + + + P +W D
Sbjct: 276 V--AMAWARQQAGSEGARVWLSELVWRDFYFQILFHHPHVVNAAFKPVYDRIQWRNDPAQ 333
Query: 414 FESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLD 473
F +W +G TGYPL+DA M++++ TG+M NR R + SFL +D+GIDWR G +F L D
Sbjct: 334 FAAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMVVASFLTKDLGIDWRWGERYFADHLND 393
Query: 474 YDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQL 522
+D +N G W + A G D + R F+ Q++ +D G+++ ++P+L
Sbjct: 394 FDLAANNGGWQWAASSGCDAQPYFRIFNPVAQSEKFDAGGDFIRRYVPEL 443
>gi|428314222|ref|YP_007125199.1| deoxyribodipyrimidine photolyase [Microcoleus sp. PCC 7113]
gi|428255834|gb|AFZ21793.1| deoxyribodipyrimidine photolyase [Microcoleus sp. PCC 7113]
Length = 478
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 125/465 (26%), Positives = 213/465 (45%), Gaps = 51/465 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A SS+ V+ V+C+DP + R ++I
Sbjct: 4 LILFWHRRDLRISDNIGLAAARASSQKVVGVFCLDPNILERD------DVAPARVSYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L++ G LLI H P + +P LA + A A++ + +RLV L
Sbjct: 58 CLQSLQQGYTQAGSQLLILHDDPCKALPDLAAALKAKAIFWNWDVEPYSKQRDRLVSDAL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
Q + + W ++ ++I VYT F K+ + +
Sbjct: 118 TQKGIEVHHH------------WDQLLHAPEEIHSKSQEPYTVYTPFWKNWSNQAKMAPV 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFV--------GGESAALGRVNEY 313
+ + G P + +Q + +K + FV GE AA ++ E+
Sbjct: 166 DTLHQAEGLTPEEQE-----TAQQAGAIALPTAKDLGFVWDNELLTQPGEEAAQAKLAEF 220
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
+ Y+E RN +++ S L G+I R ++ + + ++++ +
Sbjct: 221 --STHAITEYEEQRN-FPAIKGTSELSAALKFGAIGIRTVWAATIAALKNSRSDETQASI 277
Query: 374 LF---ELMWRDYFRFISLKYGNSLFHL----GGPRKLEYK---WSQDQKLFESWRDGCTG 423
EL WR++ Y ++L+H GP + +K W + +LF++W +G TG
Sbjct: 278 QAWQKELAWREF-------YQHALYHFPELADGPYRDTFKDFPWDNNPQLFQAWCEGKTG 330
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YP++DA M++L+ G+M NR R I SFL +D+ I+W+ G ++F L D D +N G W
Sbjct: 331 YPIVDAAMRQLNTLGWMHNRCRMIVASFLTKDLLINWQWGEKYFLQKLYDADLSANNGGW 390
Query: 484 TYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
+ A G DP+ R F+ QA+ +D EGEY+ WLP+L+++ E
Sbjct: 391 QWSASSGMDPKPLRIFNPASQAKKFDPEGEYIREWLPELRSVDTE 435
>gi|432673671|ref|ZP_19909166.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE142]
gi|431218003|gb|ELF15489.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE142]
Length = 472
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 221/460 (48%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|193070647|ref|ZP_03051584.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
gi|260866839|ref|YP_003233241.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O111:H- str. 11128]
gi|300906963|ref|ZP_07124633.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
gi|301305193|ref|ZP_07211291.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
gi|415818897|ref|ZP_11508513.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1180]
gi|415860594|ref|ZP_11534309.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1]
gi|417193165|ref|ZP_12015012.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0522]
gi|417219176|ref|ZP_12024018.1| deoxyribodipyrimidine photo-lyase [Escherichia coli JB1-95]
gi|417590394|ref|ZP_12241111.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2534-86]
gi|417606816|ref|ZP_12257340.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_DG131-3]
gi|417638029|ref|ZP_12288197.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TX1999]
gi|419168695|ref|ZP_13713089.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7A]
gi|419179678|ref|ZP_13723301.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7C]
gi|419185236|ref|ZP_13728758.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7D]
gi|419190689|ref|ZP_13734155.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7E]
gi|419195815|ref|ZP_13739220.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC8A]
gi|419201869|ref|ZP_13745094.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8B]
gi|419219971|ref|ZP_13762924.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8E]
gi|419368973|ref|ZP_13910101.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC14A]
gi|419805391|ref|ZP_14330528.1| FAD binding domain of DNA photolyase [Escherichia coli AI27]
gi|419866126|ref|ZP_14388497.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H25 str.
CVM9340]
gi|419889567|ref|ZP_14409952.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9570]
gi|419896132|ref|ZP_14415872.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9574]
gi|419928868|ref|ZP_14446573.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-1]
gi|420090248|ref|ZP_14602021.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9602]
gi|420096405|ref|ZP_14607796.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9634]
gi|420384331|ref|ZP_14883717.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa12]
gi|424771442|ref|ZP_18198585.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|427803769|ref|ZP_18970836.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli chi7122]
gi|427808359|ref|ZP_18975424.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli]
gi|433129063|ref|ZP_20314533.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE163]
gi|433133877|ref|ZP_20319252.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE166]
gi|443616732|ref|YP_007380588.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O78]
gi|192956035|gb|EDV86501.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
gi|257763195|dbj|BAI34690.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O111:H- str. 11128]
gi|300401266|gb|EFJ84804.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
gi|300839505|gb|EFK67265.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
gi|315257624|gb|EFU37592.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1]
gi|323180055|gb|EFZ65611.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1180]
gi|345344925|gb|EGW77284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2534-86]
gi|345364221|gb|EGW96347.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_DG131-3]
gi|345395156|gb|EGX24907.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TX1999]
gi|378017913|gb|EHV80780.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7A]
gi|378026863|gb|EHV89495.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7C]
gi|378032654|gb|EHV95235.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7D]
gi|378040752|gb|EHW03215.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7E]
gi|378052010|gb|EHW14321.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC8A]
gi|378056269|gb|EHW18516.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8B]
gi|378071823|gb|EHW33890.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8E]
gi|378221634|gb|EHX81879.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC14A]
gi|384471571|gb|EIE55645.1| FAD binding domain of DNA photolyase [Escherichia coli AI27]
gi|386190346|gb|EIH79094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0522]
gi|386192938|gb|EIH87246.1| deoxyribodipyrimidine photo-lyase [Escherichia coli JB1-95]
gi|388336307|gb|EIL02854.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H25 str.
CVM9340]
gi|388357206|gb|EIL21798.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9570]
gi|388358887|gb|EIL23271.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9574]
gi|388404913|gb|EIL65356.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-1]
gi|391309167|gb|EIQ66844.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa12]
gi|394386486|gb|EJE63986.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9602]
gi|394389156|gb|EJE66347.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9634]
gi|412961951|emb|CCK45864.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli chi7122]
gi|412968538|emb|CCJ43163.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli]
gi|421940301|gb|EKT97775.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|431651007|gb|ELJ18312.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE163]
gi|431662120|gb|ELJ28905.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE166]
gi|443421240|gb|AGC86144.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O78]
Length = 472
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 221/460 (48%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I+ SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|322833858|ref|YP_004213885.1| deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602]
gi|384259038|ref|YP_005402972.1| deoxyribodipyrimidine photolyase [Rahnella aquatilis HX2]
gi|321169059|gb|ADW74758.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602]
gi|380755014|gb|AFE59405.1| deoxyribodipyrimidine photolyase [Rahnella aquatilis HX2]
Length = 476
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 124/454 (27%), Positives = 207/454 (45%), Gaps = 37/454 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLR+ DN AL A D V+ V+ P Q H P+ +A F+ +
Sbjct: 5 LVWFRNDLRITDNRALHAACEDPQARVIAVFVATP--EQWKQHEMAPR----QAMFIYQH 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L+ L RG+ L + K+ A++ K+ E + +
Sbjct: 59 LQALQHALAERGIGLHYHQCDDFADSVTWLKDFCKTEKVDALFYNKQYEFNERQRDAALE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+ + V+ +D P + MY VYT FR++ ++ T
Sbjct: 119 NAVSESVICHAFDDSLLLPPGSVMTGNNEMY-------------KVYTPFRRAFLSRLTE 165
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
+P+ P + + V + P G F GE AA R+ + ++
Sbjct: 166 SDSRSLPA----PQTRGNAEKVVTHRLMPFDYPLADIGDHFAIGEEAARNRLRSFC--RE 219
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY---ERERVANDSTYWVLF 375
++ Y E R+ + D ++ SP+LA G +SPR +++ E+ + W L
Sbjct: 220 QVQDYLEQRD-LPAVDGTSSLSPYLAIGVLSPRQCLNRLRAECPDVLEKTDGGAFGW-LN 277
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + + + H + +W ++W+DG TGYP++DA M++L
Sbjct: 278 ELVWREFYRHLIVAWPKLCKHQPFVAWTDNVRWRHAPDDLQAWKDGKTGYPIVDAAMRQL 337
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ I+WR G +F + LLD D +N G W +GA G D
Sbjct: 338 NATGWMHNRLRMIVASFLVKDLLINWREGERYFMSQLLDGDLAANNGGWQWGASTGTDAA 397
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
R F+ Q + +D+ G ++ W+P+L +P+
Sbjct: 398 PYFRIFNPTTQGERFDKTGCFIKAWVPELADVPE 431
>gi|400754263|ref|YP_006562631.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
2.10]
gi|398653416|gb|AFO87386.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
2.10]
Length = 479
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 130/448 (29%), Positives = 203/448 (45%), Gaps = 34/448 (7%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
W R DLR+ +N AL A + V+PV+ D GA L LA
Sbjct: 14 WVRRDLRLAENPALDAAVAAGAPVIPVFIFDTLDEDL---------GAAPRFRLGLGLAH 64
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
L K L RG L++R G +E++ L GA A++ + + + + ++K L+
Sbjct: 65 LAKGLERRGARLILRRGPAQEVLTQLITETGAGAIHWTRAYDPQAIARDTAIKKQLKGQG 124
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
++++S G ++ + + VY+ + KS+ + V G I P
Sbjct: 125 IAAKSFG------------GHLLFEPWTVETKTGGMYRVYSPYWKSVRDR-DVDGLIAAP 171
Query: 266 SSFGPP---PSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
S P P+ D S L + + V++ R GE AA R+ E+ +
Sbjct: 172 SRIPAPAQWPASDDLDSWQLAAGMRRGADVVAQYCRV--GEDAAQARLAEFL--DTRVAD 227
Query: 323 YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDY 382
YK+ R+ D ++ S LA G ISPR ++ E R L E++WR++
Sbjct: 228 YKQDRD-FPAVDATSGLSENLAWGEISPRRMWHH--GLEARRAGKSGAEHFLKEIVWREF 284
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWS-QDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+ + L P ++WS QD ++WR G TGY +DA M+EL +TG M
Sbjct: 285 AYHLMFHTPHILTRNWRPEWESFRWSEQDDDRVDAWRRGQTGYNFVDAAMRELYVTGKMH 344
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFS 500
NR R I SFL + M WR+G +WFE CL+D+DP SN W + AG G D R F+
Sbjct: 345 NRARMIVASFLTKHMLTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFN 404
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKE 528
Q + +D +G Y + W+ + +A P +
Sbjct: 405 PDGQLEKFDPKGRYQSAWIAEGQANPPQ 432
>gi|153831640|ref|ZP_01984307.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
gi|148872150|gb|EDL70967.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
Length = 471
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 221/457 (48%), Gaps = 43/457 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI--- 140
+VWFR DLR LD+ AL A D+ + V+ + P Q H P L A+ L+
Sbjct: 3 LVWFRRDLRTLDHTALKAALDTGQPVVAGFVSTPEQWQE--HNMAPMQADLIARRLVHLN 60
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
E LADL L+ + + + E+I A S A +V A E ++R V
Sbjct: 61 EELADLNIPLLYKEVP---KFSNVTEVIKDWALSLNAKSVMANIHYEVNEQALDREVADV 117
Query: 201 LQQVVLSSQS-NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + ++ ++ +DK + P TT+ + F V+T F+++ K
Sbjct: 118 LAKSQVTFEAFHDKCVHAP-------TTVLNKQGEYFK------VFTPFKRAWLLK---- 160
Query: 260 GCIRIPSSFGPPPSV-VDWGSVPLIEQLELHS------PKVSKGMRFVGGESAALGRVNE 312
++P P P + ++ +E H+ P+ S +V S + + E
Sbjct: 161 --FQMPMVSKPEPQAEIPQEAIQPLEADRYHADVPFTYPRESSDQWYVST-SDIVHHLRE 217
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
+ ++ Y+E R+ + D +++ SP+LA G++SPR + + D
Sbjct: 218 F--ARERSDAYQEKRD-LPSVDGTSQLSPYLAIGALSPRQCIARLYAENPHTDLTDGKAT 274
Query: 373 VLFELMWRDYFRFISLKYGNSLFHLGG--PRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L E++WR++++ + L + L G P + + +WS D+ FE W+ G TGYP++DA
Sbjct: 275 WLSEIIWREFYQHL-LVFEPKLVKGKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAA 333
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFL +D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 334 MRQLNATGWMHNRLRMIVASFLTKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTG 393
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D + R F+ Q + +D +G +V YW+P++K +P
Sbjct: 394 CDGQPYFRIFNPISQGEKFDSDGTFVRYWVPEIKQVP 430
>gi|332293614|ref|YP_004432223.1| deoxyribodipyrimidine photo-lyase [Krokinobacter sp. 4H-3-7-5]
gi|332171700|gb|AEE20955.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter sp. 4H-3-7-5]
Length = 465
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 124/452 (27%), Positives = 205/452 (45%), Gaps = 42/452 (9%)
Query: 72 SKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT 131
S A + V I WFR DLR+ DN L+A VLP++ D PK
Sbjct: 25 SYATTMSSNKVNIFWFRRDLRLDDNVGFLEALKGDLPVLPIFIFDKEILD-----KLPKD 79
Query: 132 GALRAQFLIECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEE 190
A R F+ E L +R L + +L + + PE++ L+K F V+ ++ E
Sbjct: 80 DA-RVTFIFETLQKMRSTLQDEHASSLAMYYDTPEKVFKQLSKDFEIATVFTNRD--YEP 136
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK 250
ER V+SS D N + K ++ D++ VYT F+
Sbjct: 137 YAKER-------DEVISSLLKD---NDIEFKTFKDQVIFEKDEVVKGDGDPYVVYTPFKN 186
Query: 251 SIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRV 310
+ + + I + ++++ +P + + +G E +++ V
Sbjct: 187 KWKERFDTDKDLTIHYTSQHLNNLIEHSRLPNL------------SLSDMGFEKSSI-EV 233
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
EY L++ Y++TRN D ++ P L G++S R K ++ +
Sbjct: 234 PEYDVTPTLIQNYEDTRN-FPAQDGTSHLGPHLRFGTVSVR------KMMKKAIAETNEI 286
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
+W EL+WR++F I + ++ + +W ++ FE W++G TGY L+DA
Sbjct: 287 FWS--ELIWREFFMQILFHFPHTKDKAFRSKYDRIEWRNNEDEFEKWKNGETGYLLVDAG 344
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M+EL+ TG+M NR R + SFL + + IDWR G +F LLDY+ SN GNW + AG G
Sbjct: 345 MRELNTTGYMHNRVRMLVASFLCKHLLIDWRWGETYFAEKLLDYEMSSNVGNWQWAAGSG 404
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQ 521
D R F+ Q +D++ EY++ W+P+
Sbjct: 405 VDAAPYFRIFNPITQVDKFDKQKEYISKWIPE 436
>gi|416285588|ref|ZP_11647810.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905]
gi|320179459|gb|EFW54416.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905]
Length = 472
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 222/464 (47%), Gaps = 48/464 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR DLR+ DN AL A +SS VL +Y PR +T H P+ +A+ +
Sbjct: 5 LAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWET--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R E + A++ H Y + +E +++VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G H PF ++ L R+ +
Sbjct: 119 RALRN------VVCEGFDDSVILPPGAVMTGNHEMHKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAVPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--ENGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L EL+WR+++R + Y + H + +++ W + ++W+ G TGYP++DA
Sbjct: 273 LSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIVDAA 330
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 331 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTG 390
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 391 TDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|375259696|ref|YP_005018866.1| deoxyribodipyrimidine photolyase [Klebsiella oxytoca KCTC 1686]
gi|365909174|gb|AEX04627.1| deoxyribodipyrimidine photolyase [Klebsiella oxytoca KCTC 1686]
Length = 482
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 126/475 (26%), Positives = 217/475 (45%), Gaps = 44/475 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A D VL ++ P Q H P+ A F+I
Sbjct: 5 LVWFRADLRIHDNLALAAACRDPHAEVLGLFIATP--GQWRQHGMAPRQAA----FMISH 58
Query: 143 LADLRKNLMNRGLNLLIRHGK----PEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L+ L +G+ L I H ++ + + ++ + E + V
Sbjct: 59 LHSLQAALAEKGIPLQIEHAADFTASVALLARICRQRQVTHLFYNYQYEINERQRDAAVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA--KC 256
K L +V + Q D S P ++ G+ + PF ++ + R+ EA +C
Sbjct: 119 KTLAEV--TCQGFDDSVLLPPGSVLTGSREMYKVFTPFKNAFI-------RRLQEALPEC 169
Query: 257 TVRGCIRIPSSFGPPPSV-VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
+R V +D+ P +L F E +A+ R+ +
Sbjct: 170 VAAPKVRAGGPIAAASEVKIDYPQTPFDSEL------------FAADEKSAIARLRGFCQ 217
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+K E + ++ + +++ SP LA G++SPR ++ + + ++ L
Sbjct: 218 QK---AADYEQQRDLPAIEGTSRLSPCLAVGALSPRQCLHRLRVEQPRALDGEAGLVWLN 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPR---KLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + + Y N G P W D+ ++W+ G TG+P++DA M+
Sbjct: 275 ELIWREFYRHLMVYYPN--LCKGRPFIDWTDNVAWLDDKSALQAWQRGQTGFPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR+G +F L+D D +N G W + A G D
Sbjct: 333 QLNATGWMHNRLRMIVASFLVKDLRIDWRLGERYFIEQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKH 546
R F+ Q + +D+ G+++ WLP+L +P++ + P +Q V+L +
Sbjct: 393 AAPYFRIFNPTTQGERFDKAGQFIRQWLPELAGVPEKAVHQPWLWAEKQGVTLDY 447
>gi|78778672|ref|YP_396784.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. MIT 9312]
gi|78712171|gb|ABB49348.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. MIT 9312]
Length = 478
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 131/464 (28%), Positives = 223/464 (48%), Gaps = 53/464 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN+AL+KA+ S + Y +D + T+ F + RA FL + L
Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSNAITSTYILDRNY---THDF----SANSRAWFLGDSL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L N G L+I G P IIP LAK+ A V K E+N + ++KNL++
Sbjct: 60 QELGNNWEKMGSRLVIEEGDPVLIIPQLAKTIDAKFVIWNKTIEPYEINRDLQIKKNLKE 119
Query: 204 VVLSS-QSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ +S D P LK+ G ++ P+ VY F K++++K + G
Sbjct: 120 KNIQVIESWDHLLVEP-LKIFSG------NNKPYS------VYGPFYKNLKSKMNLLGLY 166
Query: 263 ---RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVG--------GESAALGRVN 311
++ F + + LI + K K ++F G GE+ A +
Sbjct: 167 DQDKVIFQFKDIDNKLK--ENKLINSSDSTLKKFLKNIKFSGSNICPCRPGENGAEILLE 224
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
++ +K++ Y R ++ + ++ S L G+IS R ++ + +++++
Sbjct: 225 KFINEKNIYS-YNSAR-DLPSHNGTSFLSASLRFGTISIRKVWNATLDLNSDFESHENSL 282
Query: 372 WVLF---ELMWRDYFRFISLKYGNSLFHL----GGPRKL---EYKWSQDQKLFESWRDGC 421
+ EL+WR++ Y + LFH GP + ++ W + + F+ W +G
Sbjct: 283 SIETWQKELVWREF-------YQHCLFHFPELEKGPYRKKWGQFPWQNNNEWFQHWSNGE 335
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG P++DA M++L+ TG+M NR R I SFLV+D+ W+MG + F L+D D +N G
Sbjct: 336 TGVPIVDAAMRQLNSTGWMHNRCRMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNG 395
Query: 482 NWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
W + A G DP+ R F+ QA+ +D EY+ W+P+L +
Sbjct: 396 GWQWSASSGMDPKPLRIFNPYTQAKKFDPICEYIKSWIPELSKV 439
>gi|94498268|ref|ZP_01304828.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
gi|94422270|gb|EAT07311.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
Length = 458
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 208/460 (45%), Gaps = 60/460 (13%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVD---PRHSQTTYHFGFPKTGALRAQFLI 140
++WFR DLR+ D AL+ A S V+PVY +D PR + GA R +L
Sbjct: 6 LLWFRQDLRLSDQAALIAA-ASEGPVVPVYVLDDDTPRQ--------WVMGGASR-WWLH 55
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
LA L + L +G L +R GK +++ +LAK GA V+A N E+ V K
Sbjct: 56 HSLASLDRALREKGSRLTLRRGKSADVLQALAKECGAGRVHALHHYEPWWRNAEKAVAKA 115
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L L L G + + + +YT F +++ +
Sbjct: 116 LD-----------------LCLHDGILLLPPGAVRTGSGGIYKIYTPFARAVMEQMPPAA 158
Query: 261 CIRIPSSFGPPPS------VVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNE 312
R P++ P S + DWG +P P + G + + GE A V
Sbjct: 159 PNRTPATIDAPESWPETDRLSDWGLLPT-------KPDWAGGFKKDWTPGEDGARANVAA 211
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
+ D + Y RN + + +++ SP L G +SP Y++ V + +N
Sbjct: 212 FI---DEVGDYPTGRN-LPSVEGTSRLSPHLHYGEVSPAYVWHRVTA------SNADAEI 261
Query: 373 VLFELMWRDYFRFISLK---YGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L EL+WRDY + YG+ R + + F +W+ G TGYP++DA
Sbjct: 262 FLKELIWRDYTHTQICEMPAYGSKNARDDFDRMDWRDLREARGDFVAWKKGRTGYPIVDA 321
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L TG+M NR R IA SFL++ + IDWR GA+WF L+D D +N NW + AG
Sbjct: 322 GMRQLWTTGWMHNRVRMIAASFLIKHLLIDWRHGAKWFWDTLVDADYANNSVNWQWVAGS 381
Query: 490 GNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D R + Q++ +D G+Y+ W+P+L AL E
Sbjct: 382 GIDANMFSRIMAPLTQSEKFD-AGDYIRQWVPELAALSNE 420
>gi|170020947|ref|YP_001725901.1| deoxyribodipyrimidine photolyase [Escherichia coli ATCC 8739]
gi|169755875|gb|ACA78574.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 8739]
Length = 472
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 220/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|415814897|ref|ZP_11506495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68]
gi|323170823|gb|EFZ56473.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68]
Length = 472
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 220/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
Length = 479
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 212/461 (45%), Gaps = 42/461 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A S V+ V+C+DP + +R ++I
Sbjct: 4 LVLFWHRRDLRITDNIGLATARQHSSKVVGVFCLDPNILERD------DVAPVRVTYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L +L++ + G LLI G P + IP LA++ A AV+ + +R + L
Sbjct: 58 SLQELQQRYVQAGSQLLILRGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIATL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF---------RKSI 252
+ + +++ W ++ D+I ++ VYT F K +
Sbjct: 118 KDKGIQCLTHN-----------WDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPV 166
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
E V G V ++P + L + GE+AA ++ E
Sbjct: 167 ETLHNVEGLTEAEQELAQKAGV---KALPTAKDLGFF---WDADLIIAPGEAAAQAKLAE 220
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERERVANDSTY 371
+ K + Y+E RN G + +++ S L G I R +++ +++ E R +T
Sbjct: 221 FTAKA--ITEYQEQRN-FPGVNGTSQLSAALKFGVIGIRTVWQTTLEALENSRSEETTTS 277
Query: 372 WVLF--ELMWRDYFRFISLKYGNSLFHLGGPRKL--EYKWSQDQKLFESWRDGCTGYPLI 427
+ EL WR++++ Y G R + W +++ F++W +G TGYP++
Sbjct: 278 IRTWQQELAWREFYQHA--MYNFPELADGAYRATFKNFPWETNEEHFQAWCEGKTGYPIV 335
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++++ +G+M NR R I SFL +D+ I+ + G ++F L+D D +N G W + A
Sbjct: 336 DAAMRQMNESGWMHNRCRMIVASFLTKDLLINPQWGEKYFMQKLIDGDLSANNGGWQWSA 395
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G DP+ R F+ Q+Q +D + EY+ W+P+L+++ E
Sbjct: 396 SSGMDPKPLRIFNPASQSQKFDPDAEYIRQWVPELRSMDTE 436
>gi|264680117|ref|YP_003280026.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
gi|262210632|gb|ACY34730.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
Length = 512
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 134/491 (27%), Positives = 220/491 (44%), Gaps = 45/491 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTG---ALRAQF 138
V ++W R DLR+ DN AL A E + V+ D + P+ Q
Sbjct: 23 VGLIWLRRDLRLADNAALYHALQQCEKLYCVFVFD-----DSILAALPRADRRVEFICQS 77
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L E A LR+ L+ R G P++IIP+LA+ GA AV+ C+++ + R
Sbjct: 78 LTELAAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVF-----CNDDDEPAAIAR 132
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
L SQ QL L + ++ D++ S V+T ++ + K T
Sbjct: 133 DAQVARSLKSQG--------QLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKIT 184
Query: 258 VRGCIRIPSSFGPPPSVVDWGSV---PLIEQLEL-HSPKVSKGMRFVGGESAALGRVNEY 313
PS + D P+ +L +P G+R G S A + ++
Sbjct: 185 PFYLSAYPSERDLASKLADLPDTERRPIPSAADLGFAPDTLAGLRLPTGVSGARQLLADF 244
Query: 314 FWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSIS----PRYIYEEVKSYERERVAN 367
+ L YK R+ + GP Y S L G++S R +E + + A
Sbjct: 245 LPR---LPQYKTARDFPALKGPSY---LSVHLRFGTVSIRELARLAHEAAHNEDWSAAAR 298
Query: 368 DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKW---SQDQKLFESWRDGCTGY 424
+ L EL+WRD++ I + P +W ++ LF +W +G TGY
Sbjct: 299 EGAATWLSELIWRDFYFQILAHQPYVVERSFKPAYDAIEWETGAEADTLFAAWCEGRTGY 358
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
PL+DA M++L+ +G+M NR R + SFLV+D+G+DWR G +F L D+D +N G W
Sbjct: 359 PLVDAAMRQLNSSGYMHNRLRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQ 418
Query: 485 YGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVS 543
+ A G D + R F+ Q++ +D +G+++ ++P+L LP + R+ P ++ + +
Sbjct: 419 WAASTGCDAQPWFRIFNPVTQSEKFDPDGKFIVRYVPELTPLPAKLRHAP---WLAKPLE 475
Query: 544 LKHGNINQNRN 554
L I R+
Sbjct: 476 LAEAGITLGRD 486
>gi|194439253|ref|ZP_03071333.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
gi|253774322|ref|YP_003037153.1| deoxyribodipyrimidine photolyase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160778|ref|YP_003043886.1| deoxyribodipyrimidine photolyase [Escherichia coli B str. REL606]
gi|254287566|ref|YP_003053314.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
BL21(DE3)]
gi|300929490|ref|ZP_07144958.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
gi|387823318|ref|YP_002998501.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli BL21(DE3)]
gi|422785304|ref|ZP_16838043.1| DNA photolyase [Escherichia coli H489]
gi|442599566|ref|ZP_21017284.1| Deoxyribodipyrimidine photolyase [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|194421838|gb|EDX37845.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
gi|253325366|gb|ACT29968.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972679|gb|ACT38350.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli B
str. REL606]
gi|253976873|gb|ACT42543.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
BL21(DE3)]
gi|300462599|gb|EFK26092.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
gi|313848579|emb|CAQ31174.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli BL21(DE3)]
gi|323963088|gb|EGB58658.1| DNA photolyase [Escherichia coli H489]
gi|441651836|emb|CCQ02781.1| Deoxyribodipyrimidine photolyase [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 473
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 220/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|416267586|ref|ZP_11641904.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112]
gi|420378972|ref|ZP_14878465.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 225-75]
gi|320175355|gb|EFW50459.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112]
gi|391305965|gb|EIQ63732.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 225-75]
Length = 472
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 220/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
Length = 483
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 129/457 (28%), Positives = 206/457 (45%), Gaps = 33/457 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VW R+DLR+ DN AL +A DS V+P+ +D G G +L L
Sbjct: 11 VVWLRDDLRLDDNPALAEAADSGRPVVPLVVLDEESD------GVRSLGGTHKWWLHHSL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
K+L ++G L++R GK E + + +S GA + + V+ V L
Sbjct: 65 QCFGKDLADKGAPLILRRGKASEHVVDIVESTGATTLLMNRRYDQASRAVDDAVEAALGS 124
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V +++ ++ D + VYT F K++ A+ R I
Sbjct: 125 DV-------------EVQRFTANILHDPDKVRTKTGGWYKVYTPFWKNL-AEDEPRDPID 170
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLEL--HSPKVSKGMR--FVGGESAALGRVNEYFWKKDL 319
P S+ D +E+ +L P S G+ + GE+AA R E+ +
Sbjct: 171 PPDKLA---SLDDQPRSDRLEEWDLLPTRPDWSGGIAAFWKVGEAAAHERFEEF--SDEW 225
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE--EVKSYERERVANDSTYWVLFEL 377
L Y + R+ G D +++ SP L G ISP ++ E + R+ + D+ EL
Sbjct: 226 LNDYPDGRDRP-GDDATSRMSPHLRWGEISPYRLWHMAEACANRRKTIPGDALKTFKKEL 284
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRD+ + +G R + W + +W+ G TGYP++DA M++L
Sbjct: 285 VWRDFNYHLLHNFGPLATQNYNDRFDAFPWRSAKSELRAWQKGLTGYPIVDAGMRQLWEC 344
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED- 496
G+M NR R I SFL +D+ IDWR G WF L+D D SN W + G G D +
Sbjct: 345 GWMHNRVRMIVGSFLTKDLLIDWREGERWFWDTLVDGDIASNTAQWQWIGGSGADAQPYF 404
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q+Q +D +G+Y+ ++P+L LP + + P
Sbjct: 405 RVFNPVTQSQRFDGDGDYIRRFVPELADLPDKVLHAP 441
>gi|187734160|ref|YP_001879362.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
gi|187431152|gb|ACD10426.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
Length = 472
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 220/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFIASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|15829987|ref|NP_308760.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
Sakai]
gi|168750637|ref|ZP_02775659.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4113]
gi|168757158|ref|ZP_02782165.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4401]
gi|168763986|ref|ZP_02788993.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4501]
gi|168767146|ref|ZP_02792153.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4486]
gi|168777031|ref|ZP_02802038.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4196]
gi|168779189|ref|ZP_02804196.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4076]
gi|168786859|ref|ZP_02811866.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC869]
gi|168801385|ref|ZP_02826392.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC508]
gi|195939049|ref|ZP_03084431.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4024]
gi|208809646|ref|ZP_03251983.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4206]
gi|208815503|ref|ZP_03256682.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4045]
gi|208822977|ref|ZP_03263295.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4042]
gi|209397896|ref|YP_002269331.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4115]
gi|217325709|ref|ZP_03441793.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
TW14588]
gi|254791854|ref|YP_003076691.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
TW14359]
gi|261224409|ref|ZP_05938690.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli O157:H7 str. FRIK2000]
gi|261254600|ref|ZP_05947133.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli O157:H7 str. FRIK966]
gi|387881268|ref|YP_006311570.1| deoxyribodipyrimidine photolyase [Escherichia coli Xuzhou21]
gi|416312802|ref|ZP_11657823.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1044]
gi|416317057|ref|ZP_11660189.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC1212]
gi|416325373|ref|ZP_11665781.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1125]
gi|416781458|ref|ZP_11877237.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
G5101]
gi|416792666|ref|ZP_11882132.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str.
493-89]
gi|416803982|ref|ZP_11887003.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H
2687]
gi|416835836|ref|ZP_11901566.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
LSU-61]
gi|419043757|ref|ZP_13590730.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3A]
gi|419049304|ref|ZP_13596221.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3B]
gi|419055364|ref|ZP_13602219.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3C]
gi|419060961|ref|ZP_13607743.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3D]
gi|419078113|ref|ZP_13623608.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3F]
gi|419084678|ref|ZP_13630091.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4B]
gi|419090818|ref|ZP_13636136.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4C]
gi|419096358|ref|ZP_13641602.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4D]
gi|419102440|ref|ZP_13647606.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4E]
gi|419107789|ref|ZP_13652899.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4F]
gi|420270230|ref|ZP_14772589.1| deoxyribodipyrimidine photolyase [Escherichia coli PA22]
gi|420273757|ref|ZP_14776090.1| deoxyribodipyrimidine photolyase [Escherichia coli PA40]
gi|420279041|ref|ZP_14781307.1| deoxyribodipyrimidine photolyase [Escherichia coli TW06591]
gi|420285211|ref|ZP_14787428.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10246]
gi|420290839|ref|ZP_14793003.1| deoxyribodipyrimidine photolyase [Escherichia coli TW11039]
gi|420297852|ref|ZP_14799919.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09109]
gi|420302634|ref|ZP_14804663.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10119]
gi|420308158|ref|ZP_14810130.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1738]
gi|420313713|ref|ZP_14815619.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1734]
gi|421810938|ref|ZP_16246740.1| deoxyribodipyrimidine photolyase [Escherichia coli 8.0416]
gi|421817014|ref|ZP_16252572.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0821]
gi|421822407|ref|ZP_16257844.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK920]
gi|421829140|ref|ZP_16264468.1| deoxyribodipyrimidine photolyase [Escherichia coli PA7]
gi|423659310|ref|ZP_17634564.1| deoxyribodipyrimidine photolyase [Escherichia coli PA31]
gi|424075572|ref|ZP_17812926.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA505]
gi|424081905|ref|ZP_17818770.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA517]
gi|424088530|ref|ZP_17824793.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1996]
gi|424094747|ref|ZP_17830506.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1985]
gi|424101154|ref|ZP_17836320.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1990]
gi|424107958|ref|ZP_17842543.1| deoxyribodipyrimidine photolyase [Escherichia coli 93-001]
gi|424113948|ref|ZP_17848107.1| deoxyribodipyrimidine photolyase [Escherichia coli PA3]
gi|424120006|ref|ZP_17853725.1| deoxyribodipyrimidine photolyase [Escherichia coli PA5]
gi|424126260|ref|ZP_17859469.1| deoxyribodipyrimidine photolyase [Escherichia coli PA9]
gi|424132359|ref|ZP_17865167.1| deoxyribodipyrimidine photolyase [Escherichia coli PA10]
gi|424138901|ref|ZP_17871203.1| deoxyribodipyrimidine photolyase [Escherichia coli PA14]
gi|424145340|ref|ZP_17877118.1| deoxyribodipyrimidine photolyase [Escherichia coli PA15]
gi|424151479|ref|ZP_17882741.1| deoxyribodipyrimidine photolyase [Escherichia coli PA24]
gi|424185264|ref|ZP_17888180.1| deoxyribodipyrimidine photolyase [Escherichia coli PA25]
gi|424423724|ref|ZP_17899811.1| deoxyribodipyrimidine photolyase [Escherichia coli PA32]
gi|424453886|ref|ZP_17905431.1| deoxyribodipyrimidine photolyase [Escherichia coli PA33]
gi|424460197|ref|ZP_17911134.1| deoxyribodipyrimidine photolyase [Escherichia coli PA39]
gi|424466669|ref|ZP_17916865.1| deoxyribodipyrimidine photolyase [Escherichia coli PA41]
gi|424473225|ref|ZP_17922908.1| deoxyribodipyrimidine photolyase [Escherichia coli PA42]
gi|424479171|ref|ZP_17928423.1| deoxyribodipyrimidine photolyase [Escherichia coli TW07945]
gi|424485237|ref|ZP_17934109.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09098]
gi|424491394|ref|ZP_17939768.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09195]
gi|424498450|ref|ZP_17945732.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4203]
gi|424504677|ref|ZP_17951463.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4196]
gi|424510946|ref|ZP_17957179.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14313]
gi|424518509|ref|ZP_17962941.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14301]
gi|424524335|ref|ZP_17968366.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4421]
gi|424530536|ref|ZP_17974172.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4422]
gi|424536510|ref|ZP_17979782.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4013]
gi|424542426|ref|ZP_17985249.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4402]
gi|424548745|ref|ZP_17990959.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4439]
gi|424555007|ref|ZP_17996733.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4436]
gi|424561355|ref|ZP_18002650.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4437]
gi|424567386|ref|ZP_18008309.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4448]
gi|424573572|ref|ZP_18014004.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1845]
gi|425096200|ref|ZP_18499231.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4870]
gi|425102344|ref|ZP_18504996.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.2239]
gi|425108136|ref|ZP_18510394.1| deoxyribodipyrimidine photolyase [Escherichia coli 6.0172]
gi|425123965|ref|ZP_18525550.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0586]
gi|425130005|ref|ZP_18531111.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.2524]
gi|425136345|ref|ZP_18537076.1| deoxyribodipyrimidine photolyase [Escherichia coli 10.0833]
gi|425142243|ref|ZP_18542538.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0869]
gi|425148557|ref|ZP_18548459.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.0221]
gi|425154175|ref|ZP_18553730.1| deoxyribodipyrimidine photolyase [Escherichia coli PA34]
gi|425160625|ref|ZP_18559805.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA506]
gi|425166140|ref|ZP_18564956.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA507]
gi|425172426|ref|ZP_18570830.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA504]
gi|425178315|ref|ZP_18576375.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1999]
gi|425184457|ref|ZP_18582089.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1997]
gi|425191217|ref|ZP_18588351.1| deoxyribodipyrimidine photolyase [Escherichia coli NE1487]
gi|425197543|ref|ZP_18594197.1| deoxyribodipyrimidine photolyase [Escherichia coli NE037]
gi|425204202|ref|ZP_18600336.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK2001]
gi|425209954|ref|ZP_18605695.1| deoxyribodipyrimidine photolyase [Escherichia coli PA4]
gi|425215999|ref|ZP_18611324.1| deoxyribodipyrimidine photolyase [Escherichia coli PA23]
gi|425222574|ref|ZP_18617438.1| deoxyribodipyrimidine photolyase [Escherichia coli PA49]
gi|425228813|ref|ZP_18623215.1| deoxyribodipyrimidine photolyase [Escherichia coli PA45]
gi|425235115|ref|ZP_18629081.1| deoxyribodipyrimidine photolyase [Escherichia coli TT12B]
gi|425241116|ref|ZP_18634756.1| deoxyribodipyrimidine photolyase [Escherichia coli MA6]
gi|425252966|ref|ZP_18645848.1| deoxyribodipyrimidine photolyase [Escherichia coli CB7326]
gi|425259282|ref|ZP_18651650.1| deoxyribodipyrimidine photolyase [Escherichia coli EC96038]
gi|425265382|ref|ZP_18657308.1| deoxyribodipyrimidine photolyase [Escherichia coli 5412]
gi|425292839|ref|ZP_18683422.1| deoxyribodipyrimidine photolyase [Escherichia coli PA38]
gi|425309567|ref|ZP_18699037.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1735]
gi|425315490|ref|ZP_18704570.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1736]
gi|425321554|ref|ZP_18710228.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1737]
gi|425327745|ref|ZP_18715969.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1846]
gi|425333927|ref|ZP_18721651.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1847]
gi|425340342|ref|ZP_18727588.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1848]
gi|425346216|ref|ZP_18733021.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1849]
gi|425352442|ref|ZP_18738826.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1850]
gi|425358435|ref|ZP_18744411.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1856]
gi|425364539|ref|ZP_18750090.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1862]
gi|425409124|ref|ZP_18791280.1| deoxyribodipyrimidine photolyase [Escherichia coli NE098]
gi|425415404|ref|ZP_18797044.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK523]
gi|425426543|ref|ZP_18807595.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1304]
gi|428945224|ref|ZP_19017861.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1467]
gi|428951371|ref|ZP_19023495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1042]
gi|428957226|ref|ZP_19028913.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 89.0511]
gi|428963540|ref|ZP_19034726.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0091]
gi|428969740|ref|ZP_19040370.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0039]
gi|428976192|ref|ZP_19046361.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.2281]
gi|428981910|ref|ZP_19051641.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0055]
gi|428988151|ref|ZP_19057441.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0056]
gi|428993967|ref|ZP_19062873.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 94.0618]
gi|429000080|ref|ZP_19068584.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0183]
gi|429006325|ref|ZP_19074229.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.1288]
gi|429012647|ref|ZP_19079899.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0943]
gi|429018852|ref|ZP_19085631.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0428]
gi|429024543|ref|ZP_19090950.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0427]
gi|429030863|ref|ZP_19096737.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0939]
gi|429037051|ref|ZP_19102486.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0932]
gi|429043012|ref|ZP_19108012.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0107]
gi|429048748|ref|ZP_19113404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0003]
gi|429054121|ref|ZP_19118608.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.1742]
gi|429059797|ref|ZP_19123938.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0007]
gi|429065272|ref|ZP_19129129.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0672]
gi|429071832|ref|ZP_19135183.1| deoxyribodipyrimidine photolyase [Escherichia coli 99.0678]
gi|429077146|ref|ZP_19140359.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0713]
gi|429824343|ref|ZP_19355835.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0109]
gi|429830698|ref|ZP_19361544.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0010]
gi|444923046|ref|ZP_21242751.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 09BKT078844]
gi|444945857|ref|ZP_21264273.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0839]
gi|444951417|ref|ZP_21269637.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0848]
gi|444956868|ref|ZP_21274863.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1753]
gi|444962196|ref|ZP_21279943.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1775]
gi|444967901|ref|ZP_21285373.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1793]
gi|444973403|ref|ZP_21290680.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1805]
gi|444978951|ref|ZP_21295941.1| deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 700728]
gi|444984241|ref|ZP_21301106.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA11]
gi|444989485|ref|ZP_21306221.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA19]
gi|445000337|ref|ZP_21316795.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA2]
gi|445005798|ref|ZP_21322133.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA47]
gi|445010966|ref|ZP_21327153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA48]
gi|445016739|ref|ZP_21332784.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA8]
gi|445022192|ref|ZP_21338110.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 7.1982]
gi|445027438|ref|ZP_21343211.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1781]
gi|445032933|ref|ZP_21348552.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1762]
gi|445038627|ref|ZP_21354093.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA35]
gi|445043927|ref|ZP_21359260.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4880]
gi|445049413|ref|ZP_21364575.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0083]
gi|445055067|ref|ZP_21370013.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0670]
gi|452969668|ref|ZP_21967895.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4009]
gi|13360191|dbj|BAB34156.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
Sakai]
gi|187767666|gb|EDU31510.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4196]
gi|188015195|gb|EDU53317.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4113]
gi|189003074|gb|EDU72060.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4076]
gi|189355803|gb|EDU74222.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4401]
gi|189363333|gb|EDU81752.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4486]
gi|189365922|gb|EDU84338.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4501]
gi|189373172|gb|EDU91588.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC869]
gi|189376468|gb|EDU94884.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC508]
gi|208729447|gb|EDZ79048.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4206]
gi|208732151|gb|EDZ80839.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4045]
gi|208737170|gb|EDZ84854.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4042]
gi|209159296|gb|ACI36729.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC4115]
gi|209776598|gb|ACI86611.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|209776600|gb|ACI86612.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|209776602|gb|ACI86613.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|209776606|gb|ACI86615.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|217321930|gb|EEC30354.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
TW14588]
gi|254591254|gb|ACT70615.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O157:H7 str. TW14359]
gi|320193102|gb|EFW67742.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EC1212]
gi|320637955|gb|EFX07724.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
G5101]
gi|320643350|gb|EFX12530.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str.
493-89]
gi|320648699|gb|EFX17332.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H
2687]
gi|320664741|gb|EFX31879.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
LSU-61]
gi|326341556|gb|EGD65346.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1044]
gi|326345773|gb|EGD69512.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
1125]
gi|377900039|gb|EHU64377.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3A]
gi|377902128|gb|EHU66437.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3B]
gi|377913477|gb|EHU77614.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3C]
gi|377916866|gb|EHU80940.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3F]
gi|377917735|gb|EHU81792.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3D]
gi|377938892|gb|EHV02651.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4B]
gi|377949388|gb|EHV13024.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4C]
gi|377951258|gb|EHV14877.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4D]
gi|377954261|gb|EHV17821.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4E]
gi|377967660|gb|EHV31066.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4F]
gi|386794726|gb|AFJ27760.1| deoxyribodipyrimidine photolyase [Escherichia coli Xuzhou21]
gi|390650400|gb|EIN28816.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1996]
gi|390652366|gb|EIN30586.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA517]
gi|390652802|gb|EIN30980.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA505]
gi|390669428|gb|EIN46068.1| deoxyribodipyrimidine photolyase [Escherichia coli 93-001]
gi|390672462|gb|EIN48761.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1990]
gi|390673091|gb|EIN49343.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1985]
gi|390688326|gb|EIN63401.1| deoxyribodipyrimidine photolyase [Escherichia coli PA3]
gi|390691579|gb|EIN66315.1| deoxyribodipyrimidine photolyase [Escherichia coli PA9]
gi|390692544|gb|EIN67221.1| deoxyribodipyrimidine photolyase [Escherichia coli PA5]
gi|390708082|gb|EIN81362.1| deoxyribodipyrimidine photolyase [Escherichia coli PA10]
gi|390709811|gb|EIN82866.1| deoxyribodipyrimidine photolyase [Escherichia coli PA15]
gi|390711563|gb|EIN84534.1| deoxyribodipyrimidine photolyase [Escherichia coli PA14]
gi|390714442|gb|EIN87347.1| deoxyribodipyrimidine photolyase [Escherichia coli PA22]
gi|390733044|gb|EIO04640.1| deoxyribodipyrimidine photolyase [Escherichia coli PA25]
gi|390733125|gb|EIO04719.1| deoxyribodipyrimidine photolyase [Escherichia coli PA24]
gi|390751665|gb|EIO21552.1| deoxyribodipyrimidine photolyase [Escherichia coli PA31]
gi|390751942|gb|EIO21806.1| deoxyribodipyrimidine photolyase [Escherichia coli PA32]
gi|390754526|gb|EIO24104.1| deoxyribodipyrimidine photolyase [Escherichia coli PA33]
gi|390762675|gb|EIO31933.1| deoxyribodipyrimidine photolyase [Escherichia coli PA40]
gi|390775785|gb|EIO43782.1| deoxyribodipyrimidine photolyase [Escherichia coli PA41]
gi|390777658|gb|EIO45445.1| deoxyribodipyrimidine photolyase [Escherichia coli PA42]
gi|390782901|gb|EIO50534.1| deoxyribodipyrimidine photolyase [Escherichia coli PA39]
gi|390785277|gb|EIO52828.1| deoxyribodipyrimidine photolyase [Escherichia coli TW06591]
gi|390794532|gb|EIO61823.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10246]
gi|390801293|gb|EIO68354.1| deoxyribodipyrimidine photolyase [Escherichia coli TW11039]
gi|390808844|gb|EIO75663.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09109]
gi|390809092|gb|EIO75898.1| deoxyribodipyrimidine photolyase [Escherichia coli TW07945]
gi|390818924|gb|EIO85280.1| deoxyribodipyrimidine photolyase [Escherichia coli TW10119]
gi|390822429|gb|EIO88549.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09098]
gi|390836798|gb|EIP01277.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4203]
gi|390839614|gb|EIP03713.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4196]
gi|390840970|gb|EIP04943.1| deoxyribodipyrimidine photolyase [Escherichia coli TW09195]
gi|390855214|gb|EIP17953.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14301]
gi|390858757|gb|EIP21127.1| deoxyribodipyrimidine photolyase [Escherichia coli TW14313]
gi|390859063|gb|EIP21429.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4421]
gi|390871281|gb|EIP32709.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4422]
gi|390875564|gb|EIP36573.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4013]
gi|390885711|gb|EIP45907.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4402]
gi|390887707|gb|EIP47637.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4439]
gi|390894196|gb|EIP53725.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4436]
gi|390903553|gb|EIP62599.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1738]
gi|390910002|gb|EIP68765.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4437]
gi|390911691|gb|EIP70385.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1734]
gi|390914331|gb|EIP72873.1| deoxyribodipyrimidine photolyase [Escherichia coli EC4448]
gi|390925932|gb|EIP83539.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1845]
gi|408071851|gb|EKH06182.1| deoxyribodipyrimidine photolyase [Escherichia coli PA7]
gi|408075589|gb|EKH09821.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK920]
gi|408085708|gb|EKH19288.1| deoxyribodipyrimidine photolyase [Escherichia coli PA34]
gi|408089499|gb|EKH22804.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA506]
gi|408094894|gb|EKH27889.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA507]
gi|408101810|gb|EKH34237.1| deoxyribodipyrimidine photolyase [Escherichia coli FDA504]
gi|408109651|gb|EKH41529.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1999]
gi|408116277|gb|EKH47586.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK1997]
gi|408121725|gb|EKH52631.1| deoxyribodipyrimidine photolyase [Escherichia coli NE1487]
gi|408129995|gb|EKH60192.1| deoxyribodipyrimidine photolyase [Escherichia coli NE037]
gi|408131840|gb|EKH61857.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK2001]
gi|408140762|gb|EKH70249.1| deoxyribodipyrimidine photolyase [Escherichia coli PA4]
gi|408149997|gb|EKH78616.1| deoxyribodipyrimidine photolyase [Escherichia coli PA23]
gi|408152210|gb|EKH80652.1| deoxyribodipyrimidine photolyase [Escherichia coli PA49]
gi|408157410|gb|EKH85562.1| deoxyribodipyrimidine photolyase [Escherichia coli PA45]
gi|408166470|gb|EKH94038.1| deoxyribodipyrimidine photolyase [Escherichia coli TT12B]
gi|408171756|gb|EKH98856.1| deoxyribodipyrimidine photolyase [Escherichia coli MA6]
gi|408186591|gb|EKI12619.1| deoxyribodipyrimidine photolyase [Escherichia coli CB7326]
gi|408191151|gb|EKI16768.1| deoxyribodipyrimidine photolyase [Escherichia coli EC96038]
gi|408191435|gb|EKI17041.1| deoxyribodipyrimidine photolyase [Escherichia coli 5412]
gi|408232539|gb|EKI55730.1| deoxyribodipyrimidine photolyase [Escherichia coli PA38]
gi|408238586|gb|EKI61379.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1735]
gi|408248765|gb|EKI70758.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1736]
gi|408252524|gb|EKI74167.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1737]
gi|408258867|gb|EKI80088.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1846]
gi|408268098|gb|EKI88503.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1847]
gi|408269341|gb|EKI89587.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1848]
gi|408278615|gb|EKI98318.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1849]
gi|408284809|gb|EKJ03877.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1850]
gi|408287207|gb|EKJ06087.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1856]
gi|408300205|gb|EKJ17929.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1862]
gi|408336260|gb|EKJ51057.1| deoxyribodipyrimidine photolyase [Escherichia coli NE098]
gi|408350257|gb|EKJ64140.1| deoxyribodipyrimidine photolyase [Escherichia coli FRIK523]
gi|408352843|gb|EKJ66373.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1304]
gi|408558184|gb|EKK34568.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.2239]
gi|408558632|gb|EKK34992.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4870]
gi|408559774|gb|EKK36074.1| deoxyribodipyrimidine photolyase [Escherichia coli 6.0172]
gi|408584916|gb|EKK59831.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0586]
gi|408589449|gb|EKK63961.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.2524]
gi|408591241|gb|EKK65684.1| deoxyribodipyrimidine photolyase [Escherichia coli 10.0833]
gi|408603865|gb|EKK77478.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0869]
gi|408605279|gb|EKK78795.1| deoxyribodipyrimidine photolyase [Escherichia coli 8.0416]
gi|408609257|gb|EKK82639.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.0221]
gi|408616656|gb|EKK89801.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 10.0821]
gi|427214129|gb|EKV83479.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1042]
gi|427216219|gb|EKV85353.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 89.0511]
gi|427216461|gb|EKV85580.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 88.1467]
gi|427233410|gb|EKW01160.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.2281]
gi|427233503|gb|EKW01241.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0039]
gi|427235678|gb|EKW03292.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 90.0091]
gi|427251053|gb|EKW17654.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0056]
gi|427252479|gb|EKW18964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0055]
gi|427253725|gb|EKW20119.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 94.0618]
gi|427269886|gb|EKW34793.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0943]
gi|427270023|gb|EKW34921.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0183]
gi|427275065|gb|EKW39694.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.1288]
gi|427286000|gb|EKW49890.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0428]
gi|427291627|gb|EKW55021.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0427]
gi|427293213|gb|EKW56474.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0939]
gi|427304422|gb|EKW67067.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0003]
gi|427305926|gb|EKW68487.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0932]
gi|427310167|gb|EKW72431.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0107]
gi|427321098|gb|EKW82807.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.1742]
gi|427321883|gb|EKW83546.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0007]
gi|427333669|gb|EKW94765.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0713]
gi|427333765|gb|EKW94853.1| deoxyribodipyrimidine photolyase [Escherichia coli 99.0678]
gi|427336541|gb|EKW97502.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0672]
gi|429259718|gb|EKY43369.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0109]
gi|429261582|gb|EKY44994.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0010]
gi|444550140|gb|ELV28267.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 09BKT078844]
gi|444564451|gb|ELV41387.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0839]
gi|444570806|gb|ELV47318.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0848]
gi|444581854|gb|ELV57685.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1753]
gi|444584747|gb|ELV60364.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1775]
gi|444585664|gb|ELV61212.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1793]
gi|444599163|gb|ELV74054.1| deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 700728]
gi|444599599|gb|ELV74465.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA11]
gi|444607783|gb|ELV82346.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1805]
gi|444614058|gb|ELV88298.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA19]
gi|444622532|gb|ELV96483.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA2]
gi|444631680|gb|ELW05272.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA48]
gi|444631979|gb|ELW05557.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA47]
gi|444636673|gb|ELW10063.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA8]
gi|444647044|gb|ELW20028.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 7.1982]
gi|444649530|gb|ELW22412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1781]
gi|444653039|gb|ELW25774.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.1762]
gi|444662072|gb|ELW34340.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA35]
gi|444666390|gb|ELW38461.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.4880]
gi|444672297|gb|ELW44027.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 95.0083]
gi|444674177|gb|ELW45741.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0670]
Length = 472
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 133/468 (28%), Positives = 222/468 (47%), Gaps = 51/468 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS +L +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARLLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R EI+ + A++ H Y + +E ++ VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RTLRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M+
Sbjct: 273 LNELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIE 539
R F+ Q + +DREGE++ WLP+L RN PG S E
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPEL-------RNVPGKSVHE 433
>gi|432873386|ref|ZP_20093013.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE147]
gi|431404632|gb|ELG87880.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE147]
Length = 472
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 130/459 (28%), Positives = 220/459 (47%), Gaps = 52/459 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+F+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWAAHNMSPR----QAEFINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL EI+ + A++ H Y + +E ++ VE
Sbjct: 59 LNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RTLRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSESIDPAPSIT------------LNYPRQPFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKL-----EYKWSQDQKLFESWRDGCTGYPLID 428
L EL+WR+++R + Y + H R +W ++ F++W++G TGYP++D
Sbjct: 273 LNELIWREFYRHLMTYYPSLCKH----RPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVD 328
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 329 AAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS 388
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 389 TGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVP 427
>gi|419066931|ref|ZP_13613517.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3E]
gi|424269007|ref|ZP_17894083.1| deoxyribodipyrimidine photolyase [Escherichia coli PA28]
gi|424579522|ref|ZP_18019463.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1863]
gi|425370990|ref|ZP_18755956.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1864]
gi|425383775|ref|ZP_18767658.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1866]
gi|425390473|ref|ZP_18773935.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1868]
gi|425396593|ref|ZP_18779642.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1869]
gi|425402584|ref|ZP_18785191.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1870]
gi|444929377|ref|ZP_21248524.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0814]
gi|444934693|ref|ZP_21253628.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0815]
gi|444940272|ref|ZP_21258914.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0816]
gi|444994835|ref|ZP_21311427.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA13]
gi|377920201|gb|EHU84227.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC3E]
gi|390736222|gb|EIO07564.1| deoxyribodipyrimidine photolyase [Escherichia coli PA28]
gi|390924465|gb|EIP82223.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1863]
gi|408300401|gb|EKJ18101.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1864]
gi|408316818|gb|EKJ33072.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1868]
gi|408317420|gb|EKJ33656.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1866]
gi|408331091|gb|EKJ46292.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1869]
gi|408337828|gb|EKJ52511.1| deoxyribodipyrimidine photolyase [Escherichia coli EC1870]
gi|444542067|gb|ELV21464.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0814]
gi|444551509|gb|ELV29438.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0815]
gi|444566690|gb|ELV43495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0816]
gi|444613944|gb|ELV88187.1| deoxyribodipyrimidine photo-lyase [Escherichia coli PA13]
Length = 472
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 133/468 (28%), Positives = 222/468 (47%), Gaps = 51/468 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS +L +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARLLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R EI+ + A++ H Y + +E ++ VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RTLRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSTSLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M+
Sbjct: 273 LNELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIE 539
R F+ Q + +DREGE++ WLP+L RN PG S E
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPEL-------RNVPGKSVHE 433
>gi|423205555|ref|ZP_17192111.1| hypothetical protein HMPREF1168_01746 [Aeromonas veronii AMC34]
gi|404623830|gb|EKB20679.1| hypothetical protein HMPREF1168_01746 [Aeromonas veronii AMC34]
Length = 473
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 134/458 (29%), Positives = 220/458 (48%), Gaps = 44/458 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VW RNDLR+ DN AL A E V ++ + P +Q H K +R +F++ +
Sbjct: 3 LVWLRNDLRLADNPALRHACAGDEPVAALFIISP--TQWRQH----KMAPIRQRFMLAQV 56
Query: 144 ADLRKNLMNRGLNL-LIRHGKPEEIIPSLA---KSFGAHAVYAQKETCSEELNVERLVRK 199
L + L G+ L L+R E+ +LA + G +YA + +E + V
Sbjct: 57 DVLGRELAALGIPLHLLRVETFAEVPAALADLCREQGVTQLYANQAIEIDEQRRDHAVSA 116
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + + + P +++ G+ + V+T F ++
Sbjct: 117 ALVEQGVGCHWLNGCCVLPPGRVLTGS------------GEMFKVFTPFSRAWLKALDEE 164
Query: 260 GCI--RIPSSFGPPPSVVDWGSVPLIEQLELHSP--KVSKGMRFVGGESAALGRVNEYFW 315
G + R P+ G P + W PL+E+ + +++ R+ GE AL R+N F
Sbjct: 165 GFVIHRAPAPRGEP---LPWQ--PLVERAWVDEALGELTADPRWPVGEVEALRRLN-IFL 218
Query: 316 KKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVK---SYERERVANDST 370
++ +L Y ETR+ + G ++ SP+LA+G ISPR ++ Y + A
Sbjct: 219 EQAVLD-YGETRDFPAIAG---TSVLSPYLAAGIISPRQCVAALQQRLGYRPQSKAQPGF 274
Query: 371 YWVLFELMWRDYFR-FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
W L EL+WR+++R + L S+ P + WS D F +W +G TGYP++DA
Sbjct: 275 VW-LNELVWREFYRHLLVLIPTLSMNRPFKPETADLPWSWDPDAFAAWCEGRTGYPIVDA 333
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M+ L+ TG+M NR R I SFL +D+ I WR+G ++F + L+D D +N G W + AG
Sbjct: 334 AMRCLNATGWMHNRLRMIVASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGT 393
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D R F+ Q Q +D +GE++ W+ +L +P
Sbjct: 394 GADAAPYFRVFNPTTQGQRFDPQGEFIRIWVTELADIP 431
>gi|344204249|ref|YP_004789392.1| deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
gi|343956171|gb|AEM71970.1| Deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
Length = 437
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 122/447 (27%), Positives = 209/447 (46%), Gaps = 42/447 (9%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V + WFR DLR+ DN +A + VLP++ D T PK A R F+ +
Sbjct: 5 VILFWFRRDLRLDDNVGFYQALQNDVPVLPLFIFD-----TEILENLPKADA-RVTFIHK 58
Query: 142 CLADLRKNL-MNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ L L N G + H P+ + L + + AVY + E +K
Sbjct: 59 QIQKLNNQLSANYGSGIAQFHDSPKAVFKKLIQDYTVEAVYTNH-------DYEPYAKKR 111
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
Q+ ND K ++ +++ D VYT + +
Sbjct: 112 DSQIKEILVQNDIP-----FKTFKDQVIFEKEEVVKDDGDPYVVYTPYVR---------- 156
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK-GMRFVGGESAALGRVNEYFWKKDL 319
+ +F P +V++ ++ + + S + + + +G E +++ +V ++ +L
Sbjct: 157 --KWKENFNPSVHLVEYDTLSDLRKNLYQSKSLPQLSLEDMGFEESSV-KVPDFTVSSEL 213
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
++ Y++TR+ +++ P L G++S R + VK E+ + T+W EL+W
Sbjct: 214 IQKYEDTRDYPAKEKGTSRLGPHLRFGTVSIRKM---VKKAVDEK---NETFWN--ELIW 265
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
R++F I + +++ P+ +W ++ FE W+ G TGYPL+DA M+EL+ TG+
Sbjct: 266 REFFMQILWHFPHTVNKAFRPKYDRIEWRNNEGEFEKWKAGETGYPLVDAGMRELNKTGY 325
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RY 498
M NR R + SFL + + IDWR G +F LLDY+ SN GNW + AG G D R
Sbjct: 326 MHNRVRMLVASFLCKHLLIDWRWGEAYFAEKLLDYEMASNVGNWQWAAGSGVDAAPYFRI 385
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKAL 525
F+ Q + +D+E EY+ W+P L+ L
Sbjct: 386 FNPTTQIKKFDKEKEYINQWVPDLQEL 412
>gi|82543137|ref|YP_407084.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227]
gi|416303529|ref|ZP_11653611.1| Deoxyribodipyrimidine photolyase [Shigella flexneri CDC 796-83]
gi|417680882|ref|ZP_12330264.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 3594-74]
gi|420324257|ref|ZP_14826042.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri CCH060]
gi|420351466|ref|ZP_14852656.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 4444-74]
gi|421681435|ref|ZP_16121262.1| deoxyribodipyrimidine photolyase [Shigella flexneri 1485-80]
gi|81244548|gb|ABB65256.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227]
gi|320183678|gb|EFW58518.1| Deoxyribodipyrimidine photolyase [Shigella flexneri CDC 796-83]
gi|332097668|gb|EGJ02643.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 3594-74]
gi|391256636|gb|EIQ15762.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri CCH060]
gi|391287694|gb|EIQ46210.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 4444-74]
gi|404341641|gb|EJZ68046.1| deoxyribodipyrimidine photolyase [Shigella flexneri 1485-80]
Length = 472
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 220/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACSNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|15800411|ref|NP_286423.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
EDL933]
gi|12513619|gb|AAG55031.1|AE005249_2 deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli O157:H7 str. EDL933]
Length = 472
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 133/468 (28%), Positives = 222/468 (47%), Gaps = 51/468 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS +L +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARLLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R EI+ + A++ H Y + +E ++ VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RTLRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M+
Sbjct: 273 LNELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQXNPAHLQAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIE 539
R F+ Q + +DREGE++ WLP+L RN PG S E
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPEL-------RNVPGKSVHE 433
>gi|322696650|gb|EFY88439.1| photolyase [Metarhizium acridum CQMa 102]
Length = 587
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 225/495 (45%), Gaps = 48/495 (9%)
Query: 66 TFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEAL-LKAWDSSEMVLPVYCVDPRHSQTTY 124
G + K K + WF+ DLR DN AL L + + E +P+ C+ + +
Sbjct: 78 ALGNTAEQRKKVEAKDSVVHWFKTDLRCNDNRALALASEKAKEAAVPLICM---YIVSPQ 134
Query: 125 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLI-----RHGKPEEIIPSLAKSFGAHA 179
F T +R F++ L L+K+L N + L I R P++I+ L + +G+
Sbjct: 135 DFEAHLTSPVRVDFILRTLEILKKDLANLDIPLYIETVERRKQIPDKIL-ELMEQWGSRH 193
Query: 180 VYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHS 239
++A E +EL E ++ +D + N +++ T + +
Sbjct: 194 LFANMEYEVDELRRE------------ANLVHDLAENGKSFEVVHDTCVVPPGQLRSGSG 241
Query: 240 SLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF 299
+ VY+ + +S A + + + F PP + E P+ +
Sbjct: 242 NQYAVYSPWYRSWVAH--IHADLELLELFDPPNKNPGTARKQFKDLFECAVPEAPSNKQL 299
Query: 300 V------------GGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGS 347
GESAA R+ ++ +K + Y RN + G D ++ S LASG+
Sbjct: 300 TKEEKRRFHSLWPAGESAAKERLEKFCEEK--VGGYSNNRN-IPGEDGTSSLSVHLASGT 356
Query: 348 ISPRYIYEEVKSYERER---VANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE 404
IS R + + + N+ + E+ WRD+++ + + + + P K E
Sbjct: 357 ISSRTCVRTARDRNKTKRLDAGNEGIRVWISEVAWRDFYKHVLVHW--PYVCMNKPYKPE 414
Query: 405 YK---WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWR 461
Y WS +++ F +W +G TG+P++DA M++L+ G+M NR R I SFL +D+ IDWR
Sbjct: 415 YSNIAWSYNEEHFNAWCEGRTGFPIVDAAMRQLNHNGYMHNRCRMIVASFLSKDLLIDWR 474
Query: 462 MGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLP 520
G +F L+D D SN G W + A VG DP+ R F+ Q++ +D EG Y+ W+P
Sbjct: 475 KGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPYFRIFNPLLQSEKFDPEGVYIRKWVP 534
Query: 521 QLKALPKERRNFPGG 535
+L+ L + + P G
Sbjct: 535 ELQDLDSKEIHEPYG 549
>gi|227327531|ref|ZP_03831555.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 492
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 214/462 (46%), Gaps = 51/462 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLRV DN AL A D + VL V+ P +Q H P+ A FL+E
Sbjct: 9 VVWLRNDLRVTDNLALYAACQDPNASVLAVFIATP--AQWEKHDMAPRQAA----FLLEN 62
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
L ++ L +G+ L + ++ A+ Y + +E L ++ V
Sbjct: 63 LTLVQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLR-DKQV 121
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS-----I 252
+ L V+ +D P L MY V+T FR++ +
Sbjct: 122 KDRLADSVVFHGYHDSLLLPPGSVLTGNGEMY-------------KVFTPFRQAFIKRLL 168
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVN 311
E+ T C+ P + G P +E P+ F GE AAL ++
Sbjct: 169 ESDTT---CVPAPDARGEPIDNT-------VELAPFSYPQREVDSEDFPRGERAALQQLR 218
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY---ERERVAND 368
+ ++ ++ Y + R+ P ++K SP+LA G +SPR + +++ ER
Sbjct: 219 RFC--REQVQDYDQQRDFPALPG-TSKLSPYLALGIVSPRQCFNRLRAECPDMLERREGG 275
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPLI 427
+ W EL+WR+++R + + + H ++ KW + K +W+ G TGYP++
Sbjct: 276 AFTW-FNELVWREFYRHLIVSWPQLCKHRPFTAWTQWVKWRESPKDLAAWQQGRTGYPIV 334
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L+ TG+M NR R I SFLV+D+ IDWR G +F + LLD D +N G W + A
Sbjct: 335 DAAMRQLNETGWMHNRLRMICASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAA 394
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D R F+ Q + +D EG ++ +WLP+L A+P +
Sbjct: 395 STGTDAAPYFRIFNPTTQGERFDPEGRFIRHWLPELAAVPDK 436
>gi|229583833|ref|YP_002842334.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
gi|228018882|gb|ACP54289.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
Length = 433
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 131/462 (28%), Positives = 214/462 (46%), Gaps = 85/462 (18%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRH--SQTTYHFGFPKTGALRAQFL 139
+ + FR DLR+ DN L+KA + E V+P + +DPR ++ Y F F+
Sbjct: 2 LCLFIFRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFA------INFM 55
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELNVERL-- 196
I L +L L RG L + G EE+I +L K AVY ++ T ++ ER+
Sbjct: 56 INSLNELNDELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRK 113
Query: 197 -------VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
+ K+ + +L+S+++ K+ + TT Y++ + + YT++
Sbjct: 114 YCEDTGKIMKSFEDYLLTSKNDFKNYRN-------FTTFYNVVKNKQIRKPVQNNYTNYY 166
Query: 250 KSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGR 309
K+ S G ++ EL + +G R G + R
Sbjct: 167 KN---------------SLG--------------DEHELPPRQGERGGRKEGIKLIERAR 197
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
Y R + + D T SP L G++S R +Y + +
Sbjct: 198 QINY------------DRKDFVAEDNRTFLSPHLKFGTLSIREVYYSLLDSQA------- 238
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPL 426
++ +L WRD++ ++ Y +FH P K EY +W +++L ++W +G TGYP+
Sbjct: 239 ---IIRQLYWRDFYTLLAY-YNERVFH--EPLKREYNCIEWENNERLLQAWVEGKTGYPI 292
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
IDA M++L+ TG M NR R ++ FLV+ + IDWR+G ++F + L+DYDP N GNW +
Sbjct: 293 IDAGMRQLNRTGDMPNRVRMLSAFFLVKVLLIDWRIGEKYFASKLIDYDPSVNNGNWQWI 352
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
A VG D R F KQ YD E +YV W+ +L++ E
Sbjct: 353 ASVGTDYIF-RVFDPWKQQITYDPEAKYVKRWVDELESYDAE 393
>gi|37520353|ref|NP_923730.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
gi|35211346|dbj|BAC88725.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
Length = 479
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 136/461 (29%), Positives = 213/461 (46%), Gaps = 57/461 (12%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+AIVW R DLRV DN AL +A + VL V+ VDP + T R FL E
Sbjct: 4 IAIVWHRRDLRVHDNPALWQASRTGGQVLAVFIVDPTIVERD------DTAPARIYFLRE 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ +L+K G L +R G+P + + +LA++ GA AVY + + + L
Sbjct: 58 SVLELQKAYRTIGGRLAVRVGEPVQQLVALAQAVGAGAVYFNDDIEPYARERDARAAEAL 117
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ ++ + + HP G + P+ VYT F + AK +
Sbjct: 118 RAAGITVHACAEILLHPA-----GEVLTAAGGKPYT------VYTPFWRQWSAKPKPKPF 166
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVG------GESAALGRVNEYFW 315
P V+ S P + QL G F G GE + L ++ E F
Sbjct: 167 PTPERLEAP---TVEEQSFPELAQL---------GRPFAGELLVSPGEQSGLEQL-EAFA 213
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV----KSYERERVANDSTY 371
++ L + Y E R ++ G D +++ S L G++ R ++ K E +R
Sbjct: 214 REGLYR-YGE-RRDLPGCDGTSRLSAHLKFGTVGIRAVWARTMDAWKQAEHDRDRAGLAV 271
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHL----GGPRKLEY---KWSQDQKLFESWRDGCTGY 424
W EL WR+++++ LFHL G P + E+ +W +DQ+ FE W G TGY
Sbjct: 272 WQQ-ELGWREFYKY-------ELFHLPQLAGRPFRREFENFQWDEDQERFERWCQGETGY 323
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
P++DA M++L+ +M NR R I SFL +D+ + + G +F L+D D +N G W
Sbjct: 324 PIVDAAMRQLNTVSWMHNRLRMIVASFLTKDLLLPYGWGERYFMQKLVDGDLSANNGGWQ 383
Query: 485 YGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ A VG DP+ R F+ QA YD + ++ WLP+L+ +
Sbjct: 384 WAASVGTDPKPLRIFNPSTQAGRYDPKAVFIRRWLPELEGV 424
>gi|402495080|ref|ZP_10841814.1| deoxyribodipyrimidine photo-lyase [Aquimarina agarilytica ZC1]
Length = 433
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 125/447 (27%), Positives = 202/447 (45%), Gaps = 45/447 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ I WFR DLR+ DN L A ++ VLP++ D T PK A R F+ +
Sbjct: 4 ITIFWFRRDLRLTDNTGLFFALSENKNVLPIFIFD-----TEILNSLPKKDA-RLNFIYD 57
Query: 142 CLAD--LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
L + L+ N N+G++L HGKP +I L K +VY + N + +
Sbjct: 58 SLLEINLQLNKENKGISLY--HGKPLDIFKQLCKEINITSVYTNHDYEPYAQNRDTEIAD 115
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L +TN K + ++I S VYT ++ +
Sbjct: 116 FL------------NTNGIPFKTYKDQVYFEKNEIVKADGSPYMVYTPYKNKWKDLFKTT 163
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
I+ PS + + H S + +G E + + +V + L
Sbjct: 164 EFIQYPSE-------------DYLANIYEHFNYTSLSLELLGFEKSDI-KVLPFTATPSL 209
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
++ Y++TRN + ++K P L G++S R + ++ + + E +W EL+W
Sbjct: 210 IEGYEDTRNIPSNQNGTSKLGPHLRFGTVSIREMIKKAIAQKNE------VFWS--ELIW 261
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
R++F I + ++ P+ +W ++ FE W+ G TGYPL+DA ++EL+ TG+
Sbjct: 262 REFFMQILWHFPHTQHACFKPKYDRIQWRNNEMEFEKWKKGETGYPLVDAGIRELNTTGY 321
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RY 498
M NR R + SFL + + IDWR G +F LLDY+ SN GNW + AG G D R
Sbjct: 322 MHNRVRMLVGSFLCKHLLIDWRWGEAYFAEKLLDYELSSNIGNWQWVAGTGVDAAPYFRI 381
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKAL 525
F+ Q Q +D++ Y+ W+ L L
Sbjct: 382 FNPTTQIQKFDKQHIYIKRWVKDLNEL 408
>gi|312970785|ref|ZP_07784964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
gi|310336546|gb|EFQ01713.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
Length = 472
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 220/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|432542043|ref|ZP_19778901.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE236]
gi|432547387|ref|ZP_19784181.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE237]
gi|432620773|ref|ZP_19856816.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE76]
gi|432814235|ref|ZP_20048026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE115]
gi|431077087|gb|ELD84355.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE236]
gi|431084733|gb|ELD90860.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE237]
gi|431162186|gb|ELE62641.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE76]
gi|431367248|gb|ELG53732.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE115]
Length = 472
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 220/457 (48%), Gaps = 48/457 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR DN AL A +SS VL +Y PR Q H P+ +A+F+
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPR--QWAAHNMSPR----QAEFINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L LR L +G+ LL R EI+ + A++ H Y + +E ++ VE
Sbjct: 59 LNGLRIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RTLRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGV-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P S+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIDPALSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L EL+WR+++R + Y + H + +++ W + ++W++G TGYP++DA
Sbjct: 273 LNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPTYLKAWQEGKTGYPIVDAA 330
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 331 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTG 390
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 391 TDAAPYFRIFNPTTQGEEFDREGEFIRQWLPELRDVP 427
>gi|238756042|ref|ZP_04617366.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
gi|238705767|gb|EEP98160.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
Length = 479
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 123/456 (26%), Positives = 215/456 (47%), Gaps = 43/456 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++WFR+DLRV DN AL A D V+ V+ P+ Q H PK +A F+ +
Sbjct: 5 LIWFRHDLRVTDNLALHAACQDPQAQVIAVFIATPQ--QWAAHNMSPK----QATFIQQN 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L++ L R + L + + ++ ++ + E + +
Sbjct: 59 LQCLQQALALRSIPLYYHQCHDFDASRRWLAAFSREKQVDKLFYNHQYELNERRRDAELE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+L+ V +D P L MY +YT FR++ + +
Sbjct: 119 DSLRGQVACQGYHDSLLLAPGSVLTGNGDMY-------------KIYTPFRRAFIQRLLI 165
Query: 259 RGC--IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
C + P + G P + + PL + + V + F GE AAL R+ ++
Sbjct: 166 SDCQCVPAPRARGEPITTIQ----PLAP-FDYPTENVDSVL-FPAGEEAALQRLRQFC-- 217
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE--VKSYERERVANDSTYWVL 374
++ ++ Y + R+ + +++ SP+LA G +SPR + V+ + + + L
Sbjct: 218 REPVRDYHQQRD-LPAIAGTSQLSPYLAIGQLSPRQCFNRLRVECPDMLEQPDSGAFSWL 276
Query: 375 FELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL+WR+++R + + Y H +G E +W+ D + ++W+ G TGYP++DA M
Sbjct: 277 NELIWREFYRHLLVAYPRLCQHRPFIGWTD--EVRWNTDAERLQAWQQGMTGYPIVDAAM 334
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++++ TG+M NR R I SFLV+D+ +DWR G +F + LLD D +N G W + A G
Sbjct: 335 RQMNATGWMHNRLRMITASFLVKDLLVDWRQGERYFMSKLLDGDLAANNGGWQWAASTGT 394
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D R F+ Q + +D+ G ++ +WLP+L A+P
Sbjct: 395 DSAPYFRIFNPTTQGERFDKHGVFIRHWLPELAAVP 430
>gi|126695647|ref|YP_001090533.1| DNA photolyase [Prochlorococcus marinus str. MIT 9301]
gi|126542690|gb|ABO16932.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301]
Length = 478
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 134/470 (28%), Positives = 219/470 (46%), Gaps = 65/470 (13%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN++L+KA+ S + Y D + RA FL L
Sbjct: 7 LFWHRKDLRIFDNQSLIKAFSLSNAITSTYIFDKNYPHDF-------NANSRAWFLGNSL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ- 202
+L N G L++ G P IIP LAK A V+ K E+N + ++KNL+
Sbjct: 60 QELGNNWKKMGSRLIMEEGDPVLIIPQLAKKIDAKFVFWNKSIEPYEINRDLKIKKNLEE 119
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q + ++ D P LK+ G ++ P+ VY F K++++K + G
Sbjct: 120 QNIQVIETWDHLLIEP-LKIFSG------NNKPYS------VYGPFYKNLKSKMNLLG-- 164
Query: 263 RIPSSFGPPPSVVDWGSV--PLIEQLELHSP-----KVSKGMRFVG--------GESAAL 307
+ V + + L E ++S K K ++F G GE+AA
Sbjct: 165 ----PYDQDKVVFQFKDIDNKLKENKTINSSDSVLEKFIKNIKFPGSNICPCKPGENAAE 220
Query: 308 GRVNEYFWKKDLLKVYK-ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
+ + +K K+Y ++ + + ++ S L G+IS R I+ + + A
Sbjct: 221 TILENFINEK---KIYSYDSARDFPSHNGTSFLSASLRFGTISIRKIWNATLNLNSD-CA 276
Query: 367 NDSTYWVL----FELMWRDYFRFISLKYGNSLFHL----GGPRKLE---YKWSQDQKLFE 415
N Y + EL+WR++ Y + LFH GP + + + W + + F+
Sbjct: 277 NRVNYLSIETWQKELVWREF-------YQHCLFHFPELEKGPYRKKWDHFPWQNNNEWFQ 329
Query: 416 SWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYD 475
W +G TG P++DA M++L+ TG+M NR R I SFLV+D+ +W+MG + F L+D D
Sbjct: 330 HWSNGETGVPIVDAAMRQLNSTGWMHNRCRMIVASFLVKDLICNWQMGEKKFMETLVDGD 389
Query: 476 PCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+N G W + A G DP+ R F+ QA+ +D EY+ YW+P+L +
Sbjct: 390 LAANNGGWQWSASSGMDPKPLRIFNPYTQAKKFDPICEYIKYWIPELSKV 439
>gi|381394101|ref|ZP_09919819.1| deoxyribodipyrimidine photo-lyase [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330373|dbj|GAB54952.1| deoxyribodipyrimidine photo-lyase [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 469
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 140/475 (29%), Positives = 221/475 (46%), Gaps = 53/475 (11%)
Query: 85 VWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLA 144
+WFR DLRV DN AL+KA S+ VLPVY D Q G +L L
Sbjct: 1 MWFRQDLRVKDNPALIKAAKQSK-VLPVYIYDTSVPQNAV------LGGASKWWLHHALV 53
Query: 145 DLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQV 204
L+++L NLL+ G P+EI+ SL +V+ + + + ++K L+
Sbjct: 54 ALQESLDG---NLLVLSGDPQEILLSLCTQHNISSVHWNRMYEPWAIARDTAIKKALK-- 108
Query: 205 VLSSQSNDKSTNHPQLKLIWG-TTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+S+ + STN L+W + D+ P+ V+T + K+ GC+
Sbjct: 109 --ASECDALSTNG---SLLWEPMQVLKKDETPY------KVFTPYYKN--------GCLN 149
Query: 264 IPS----SFGPPPSVVD----WGSVPLIEQLELHSPKVSKGMRFVG----GESAALGRVN 311
P PP S +D ++ L L P+V+ + E A ++
Sbjct: 150 APDPRYPQRKPPLSFMDDMDEVKGYQGVDSLAL-LPRVNWDLHMQEMWNVSEQGAQCKL- 207
Query: 312 EYFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
EYF K+ ++ Y + RN + G +++ SP+ G ISP + V N
Sbjct: 208 EYFIKQ-AIEEYNDDRNVPSVAG---TSQLSPYFHFGLISPNQAWYAVHDAFNGSRENKG 263
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
Y L EL WR++ ++ + + + + W QD++ +W+ G TG P++DA
Sbjct: 264 VYVYLSELGWREFSYYLLFHFNDIQNRNFNTKFDNFPWVQDKEGLRAWQQGKTGVPIVDA 323
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M+EL TG+M NR R I S+LV+++ IDWR G WF CLLD D SN W + AG
Sbjct: 324 GMRELYQTGYMHNRVRMIVASYLVKNLLIDWREGERWFWDCLLDADSASNSAGWQWVAGS 383
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVS 543
G D R F+ Q + +D+EG YV + P+L L K+ + P + ++++S
Sbjct: 384 GADASPYFRIFNPILQGEKFDKEGAYVKKYCPELSKLGKKFLHKPWEASEQELLS 438
>gi|434402615|ref|YP_007145500.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
gi|428256870|gb|AFZ22820.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
Length = 480
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 124/459 (27%), Positives = 217/459 (47%), Gaps = 48/459 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A S V+ V+C+DP + R +++ CL
Sbjct: 6 LFWHRRDLRIADNTGLAAAQRQSPKVVGVFCLDPDILERD------DIAPARVTYMLGCL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L++ + G LLI HG P +I LA++ A AV+ + +R + +L +
Sbjct: 60 QALQERYIQAGSQLLILHGPPVVVIADLAEALKAKAVFWNWDVEPYSQKRDRTIINSLTE 119
Query: 204 --VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ +Q+ D+ + P+ T Y VYT F K+ +K +
Sbjct: 120 KGIQFLNQNWDQILHSPEEIFSGAKTPY-------------TVYTPFWKNWSSKPKAKPV 166
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPK----VSKGMRFVG-GESAALGRVNEYFWK 316
+ ++ G + + L +EL S K V +G + GE+AA R+ +
Sbjct: 167 ETLENAEGL--TADEQEIAKLAGAIELPSAKDLGFVWEGELVISPGEAAAQARLEAF--T 222
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERERVANDSTYWVLF 375
+ + Y+E RN D +++ S L G I R +++ +++ E R +
Sbjct: 223 NNAITEYQEQRN-FPAVDGTSQLSAALKFGVIGIRTVWQATIEALENSRSGETEASIRTW 281
Query: 376 --ELMWRDYFRFISLKYGNSLFHL-----GGPRKL--EYKWSQDQKLFESWRDGCTGYPL 426
EL WR++ Y ++++H G R+ + W +Q+ F++W +G TG+P+
Sbjct: 282 QQELAWREF-------YQHAMYHFPELAEGAYRETFKNFPWENNQEHFQAWCEGRTGFPI 334
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ G+M NR R I SFL +D+ I+ + G ++F L+D D +N G W +
Sbjct: 335 VDAAMRQLNEIGWMHNRCRMIVASFLTKDLQINPQWGEKYFMQKLIDGDLSANNGGWQWS 394
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
A G DP+ R F+ QAQ +D +GEY+ W+ +L+++
Sbjct: 395 ASSGMDPKPLRIFNPASQAQKFDPDGEYIRQWVSELRSV 433
>gi|329764714|ref|ZP_08256309.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329138764|gb|EGG43005.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 451
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 134/444 (30%), Positives = 210/444 (47%), Gaps = 48/444 (10%)
Query: 87 FRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADL 146
FR DLR+ DN L+ A +S V+P + +D T K LR +FL E L DL
Sbjct: 11 FRRDLRLEDNTGLIYALKTSNEVIPCFILD------TDILDNLKKSRLRIKFLNESLKDL 64
Query: 147 RKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVL 206
+ L+ R NL I G+ EEII + V+ LN + L++ +
Sbjct: 65 NEQLIKRKTNLRIFRGRSEEIIEKIILENKIDGVF---------LNGDYTKFAQLKENKI 115
Query: 207 SSQSNDKSTNHPQLKLIWGTTMYHL-DDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
N K+ + + + H+ D+I VY++F K+ + VR I+
Sbjct: 116 KKICNQKNIGFNK----FADYLLHVPDEIHTKEQKPYTVYSYFYKTAKT-IPVRSKIKNN 170
Query: 266 SSFGPPPSVVDWGSVPL-IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYK 324
+ + S+ + IE E K+ G R L ++EY K Y+
Sbjct: 171 FRNYSLDKIKNDNSLEITIENKE----KMEGGRR---NALKILKNISEY-------KNYQ 216
Query: 325 ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFR 384
+TR + G D +TK S + G+IS R Y+ +K E + D T ++ +L WR++F
Sbjct: 217 KTR-DYPGLDKTTKLSAHIRFGTISVREAYQAIK----ENLGIDHT--LINQLYWREFFT 269
Query: 385 FISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRG 444
++ + NS + + WS +++ + +W G TG+P++DA M++L+ TGFM NR
Sbjct: 270 YVLHHFPNSKSRTFKKKFRKIPWSTNKQEYHTWCKGETGFPIVDAGMRQLNKTGFMHNRV 329
Query: 445 RQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPK- 503
R I SFL +DM IDW++G +F L+DYDP N GNW + A G D YF I
Sbjct: 330 RMIVASFLTKDMHIDWKLGERYFAEKLVDYDPAVNAGNWQWAASTGCDAVP--YFRIFNP 387
Query: 504 --QAQNYDREGEYVAYWLPQLKAL 525
Q + +D Y+ W+P+L+ L
Sbjct: 388 WIQQEKFDSNCNYIKKWIPELETL 411
>gi|448308114|ref|ZP_21497995.1| photolyase/cryptochrome [Natronorubrum bangense JCM 10635]
gi|445594526|gb|ELY48680.1| photolyase/cryptochrome [Natronorubrum bangense JCM 10635]
Length = 461
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 203/462 (43%), Gaps = 66/462 (14%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEM-VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ W R D R+ DN L A D+ E V+PVY DP ++ + G + F+
Sbjct: 3 LFWHRRDRRLADNRGLAAAADADERPVVPVYVFDPAVTE--------QMGERKRAFVERT 54
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
+ LR+ G LL+RHG +++ +L S E +VERLV +
Sbjct: 55 VDALRRQYRALGRELLVRHGPAADVLTAL----------------SGEYDVERLVYNDCT 98
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPD---VYTHFRKSIEAKCTVR 259
+Q+ D ++ L H+D + D +SL Y+ F E
Sbjct: 99 DAARQAQT-DAVEAALEIPL-----ESHVDSVLVDPASLEPSYPTYSQFAADWETHTNA- 151
Query: 260 GCIRIPSSFGPPPS----VVDWGSVPLIE-QLELHSPKVSKGMRFVGGESAALGRVNEYF 314
P + P P + D S+P +EL + G AA R+ E F
Sbjct: 152 -----PPAPEPTPDALADITDTESIPTTATDIELPT----------AGYDAASARL-ESF 195
Query: 315 WKKDLLKVYKETRNEML-GPDYST----KFSPWLASGSISPRYIYEEVKSYERERVANDS 369
++ Y+ETR+++ D T + SP+LA G+I R +++ V D
Sbjct: 196 CASGIVH-YRETRDDLARAVDEPTQAVSRLSPYLAVGAIGIREVWQRVTDVLETVDGRDR 254
Query: 370 TYWVLF--ELMWRDY-FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
+ EL WR++ + +S + P E W D F +W+ G TGYPL
Sbjct: 255 RNVEKYADELTWREHNYHLLSDTPTLETENYDDPPN-EIAWRNDADEFAAWKRGETGYPL 313
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L G++ NR RQ+ SFL + + IDWR GA F LLD+DP N GNW +
Sbjct: 314 VDAGMRQLECEGYIHNRPRQVVASFLTKHLLIDWRRGAAHFRDRLLDHDPAVNAGNWQWI 373
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
A G D + R F Q YD + +V ++P+L+++P E
Sbjct: 374 ASTGTDSVDVRIFDPVAQLAKYDADATFVREYVPELESVPAE 415
>gi|419079052|ref|ZP_13624534.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4A]
gi|377933159|gb|EHU97004.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC4A]
Length = 472
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 133/468 (28%), Positives = 222/468 (47%), Gaps = 51/468 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS +L +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARLLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R EI+ + A++ H Y + +E ++ VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RTLRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M+
Sbjct: 273 LNELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIE 539
R F+ Q + +DREGE++ WLP+L RN PG S E
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPEL-------RNVPGKSVHE 433
>gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
Length = 467
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 131/470 (27%), Positives = 205/470 (43%), Gaps = 46/470 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN+AL A + ++P++ +DP P + R FL L
Sbjct: 5 VWWVRRDLRLHDNQALAAALTRARELVPLFVLDP------ALLAGPTSSQRRNAFLFAAL 58
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L L RG L++R G+PE+++P++ + GA V A+ + + V +++
Sbjct: 59 RSLDAALRRRGSRLIVRAGRPEQVLPTVVRESGATLVMAEADGSPYARRRDEAVARSVP- 117
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
L+L+ G+T+ L I VY+ FR R R
Sbjct: 118 ----------------LQLVEGSTLRPLGSIRAPTGEPYRVYSQFR---------RAWFR 152
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG-----MRFVGGESAALGRVNEYFWKKD 318
+P P P + L L S + + RF E AA R+ + +
Sbjct: 153 LPI---PSPQDILPAPPRLPPVPRLASEPIPESPLAVPERFAPSEDAARQRLQHFLAQG- 208
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L Y RN + G S++ SP+ G +S R + Y E A L EL+
Sbjct: 209 -LASYHLRRNALDG-SGSSQLSPYFRFGLLSVREAWCAAARYLDEPDAAAGARAWLDELL 266
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++++ + + S P + W W++G TG+P++DA M++L G
Sbjct: 267 WREFYQHLLAAWPESARMSMQPEFRDVAWPGSNDALARWQEGRTGFPVVDAAMRQLVSEG 326
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
+MSNR R I SFL + + +DWR G +F L+D D +N G W + AG G D R
Sbjct: 327 WMSNRARMIVASFLSKLLLVDWREGERFFRRELVDGDLAANVGGWQWSAGTGTDAAPYFR 386
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHG 547
F+ Q + +D G +V WLP+L +P+E P IE V L+ G
Sbjct: 387 IFNPVLQGEQHDPNGSWVRTWLPELANVPREYLFAPWRMPIE--VQLRAG 434
>gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652]
gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652]
Length = 482
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 126/451 (27%), Positives = 208/451 (46%), Gaps = 39/451 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+WFR DLR+ DN+AL A S ++ +Y +P + T GA ++ +L L
Sbjct: 10 ILWFRKDLRLDDNKALNAAHFSGRPIISLYIREPEAAGTG------PLGAAQSWWLHHSL 63
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L +L R LL+ G+ ++ SL + A AV+ + ++++ + L++
Sbjct: 64 EALDGSLRKRRGGLLLASGEALGVLRSLIRQSDADAVFWNRRYDPPGISIDAHIEHELEK 123
Query: 204 VVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ +S H +L+ G+ T Y VYT F +++E
Sbjct: 124 QAIEVKSFGGQLLHEPSQLMTGSGTPYR-------------VYTPFWRALERSIE----- 165
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLE---LHSPKVSKGMRFVG----GESAALGRVNEYFW 315
P P + +P E+LE L S + F GE A ++ +
Sbjct: 166 --PEPLDIPSKLQLASKLPGSEKLESWKLLSTQPDWASNFADLWTPGEEGAQEKLRTFI- 222
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+D L YKE R+ P ++ SP LA G ISP I++ + + A D ++
Sbjct: 223 -EDRLDGYKENRDYPAKP-ATSMLSPHLALGEISPARIWDATRGLSKHLPAADIVHFRK- 279
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
E+ WRD+ + + R ++W ++ F +W G TGYP++DA M++L
Sbjct: 280 EIAWRDFSYHLLAHFPRLATANWDDRFDRFEWGSAEEDFNAWSRGMTGYPIVDAGMRQLW 339
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
G+M NR R IA SFL++D+ +DWR G WF L+D DP +N +W + AG G D
Sbjct: 340 RYGWMHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASP 399
Query: 496 -DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R F+ Q + +D +G++V +P+L+ L
Sbjct: 400 FFRVFNPVLQGEKFDPDGDFVRSHVPELRKL 430
>gi|448659248|ref|ZP_21683216.1| deoxyribodipyrimidine photolyase [Haloarcula californiae ATCC
33799]
gi|445760750|gb|EMA12007.1| deoxyribodipyrimidine photolyase [Haloarcula californiae ATCC
33799]
Length = 465
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 117/454 (25%), Positives = 206/454 (45%), Gaps = 49/454 (10%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
W R DLR DN A L A S+ V+PV+ D + H G P R F+++ L
Sbjct: 5 WHRRDLRATDN-AGLAAATPSDPVVPVFIFD---TAVLDHAGPP-----RVAFMLDALDS 55
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LR+ ++G +L++ G P ++P LA GA V K+ + VR+ L
Sbjct: 56 LREWYRDKGSDLVVAEGDPTSVLPELAAQHGAEKVTWGKDYSGLARERDAAVRQALDDAD 115
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
++ ++ + ++ +I + V+T+F + +
Sbjct: 116 VAREA------------VQNAVLHEPGEITTNAGDPYSVFTYFGRKWHDR---------- 153
Query: 266 SSFGP--PPSV-----VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
+ GP PPS VD + P + L P+ G A ++++ +
Sbjct: 154 ENAGPYDPPSADTLADVDGDAHPTLADLGFEEPEADVP---AAGTEEARALLDDFLDEN- 209
Query: 319 LLKVYK-ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN--DSTYWVLF 375
VY+ E R + + +++ S L G+I R +Y+ ++ + + DS
Sbjct: 210 ---VYEYEERRDFPADECTSRLSAHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQS 266
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELS 435
+L WR+++ + + + + + +W D++L ++W+DG TGYP++DA M++L
Sbjct: 267 QLAWREFYTQVLFAHPHVVSSNYKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLR 326
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
+M NR R I SFL +D+ IDWR G EWF L+D+D ++ G W + A G D +
Sbjct: 327 DEAYMHNRVRMIVASFLTKDLLIDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQP 386
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
R F+ Q ++YD EY+ ++P+L+ E
Sbjct: 387 YFRIFNPMTQGEDYDPNAEYIKEYVPELRDAAPE 420
>gi|440703964|ref|ZP_20884860.1| FAD binding domain of DNA photolyase [Streptomyces turgidiscabies
Car8]
gi|440274432|gb|ELP62999.1| FAD binding domain of DNA photolyase [Streptomyces turgidiscabies
Car8]
Length = 457
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 210/448 (46%), Gaps = 39/448 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V++V F DLR+ D+ L A D S V+P++ DP + F P R FL +
Sbjct: 3 VSVVLFTADLRLHDHPPLRAALDDSRTVVPLFVRDP--AVDGAGFAVPN----RLAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL DL L RG L++RHG + +A A V+ + E +R+ L
Sbjct: 57 CLHDLDTGLRERGGRLVLRHGDLVREVCRVAAEVDADEVHMAADVSGHARRREDRLRRAL 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + +D T + + G +P + +FR ++ +R
Sbjct: 117 EADGVRLHVHDTVT----VAVAPGAV------VPANSDHFAVFTPYFRHW--SQHPLREP 164
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
+ P + P V S PL L P +S+G+ GGE+ GR W + +
Sbjct: 165 LGAPRTVRVPDGVE---SDPLPSGSGL--PGLSEGL-AAGGETE--GRARLAAWLRAGVA 216
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRD 381
Y++ +++ G D +++ SP L G++S + + R + +L WRD
Sbjct: 217 SYEDRHDDLAG-DATSRLSPHLHFGTLSAVELVHRAR-----RAGGPGADAFVRQLAWRD 270
Query: 382 YFR-FISLKYGNSLFHLGGPRKLEYKWSQDQKL---FESWRDGCTGYPLIDANMKELSMT 437
+ R ++ + G++ R +W +++ E+W++G TGYP++DA M++L
Sbjct: 271 FHRQVLAARPGSATADY---RTKHDRWRSERQAREDVEAWKEGRTGYPIVDAAMRQLRHE 327
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+M NRGR + SFL + + +DWR+GA F L+D D +N NW + AG G D R +R
Sbjct: 328 GWMHNRGRLLTASFLTKTLYVDWRVGARHFLDLLVDGDIANNQLNWQWMAGTGTDSRPNR 387
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKAL 525
+ Q++ YD +G YV W+P+L++L
Sbjct: 388 VLNPVTQSKRYDPDGAYVRRWVPELRSL 415
>gi|385772287|ref|YP_005644853.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4]
gi|323476401|gb|ADX81639.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4]
Length = 433
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 210/460 (45%), Gaps = 81/460 (17%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + FR DLR+ DN L+KA + E V+P + +DPR + F+I
Sbjct: 2 LCLFIFRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEY----KSEFAINFMIN 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELNVERL---- 196
L +L L RG L + G EE+I +L K AVY ++ T ++ ER+
Sbjct: 58 SLNELNDELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYC 115
Query: 197 -----VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
+ K+ + +L+S+++ K+ + TT Y++ + + YT++ K+
Sbjct: 116 EDTGKIMKSFEDYLLTSKNDFKNYRN-------FTTFYNVVKNKQIRKPVQNNYTNYYKN 168
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
S G ++ EL + +G R G + R
Sbjct: 169 ---------------SLG--------------DEHELPPRQGERGGRKEGIKLIERARQI 199
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
Y R + + D T SP L G++S R +Y + +
Sbjct: 200 NY------------DRKDFVAEDNRTFLSPHLKFGTLSIREVYYSLLDSQA--------- 238
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPLID 428
++ +L WRD++ ++ Y +FH P K EY +W +++L ++W +G TGYP+ID
Sbjct: 239 -IIRQLYWRDFYTLLAY-YNERVFH--EPLKREYNCIEWENNERLLQAWVEGKTGYPIID 294
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG M NR R + FLV+ + IDWR+G ++F + L+DYDP N GNW + A
Sbjct: 295 AGMRQLNRTGDMPNRVRMLTAFFLVKVLLIDWRIGEKYFASKLIDYDPSVNNGNWQWIAS 354
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
VG D R F KQ YD E +YV W+ +L++ E
Sbjct: 355 VGTDYIF-RVFDPWKQQITYDPEAKYVKRWVDELESYDSE 393
>gi|452822749|gb|EME29765.1| deoxyribodipyrimidine photo-lyase [Galdieria sulphuraria]
Length = 545
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 138/511 (27%), Positives = 225/511 (44%), Gaps = 70/511 (13%)
Query: 46 PHCQVIPGADSREINHIVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDS 105
P C P A + +HI+++ T +K G IVWFR LR+ DN L +A
Sbjct: 23 PSCNT-PRARTLLASHIIQKHIHMDTGTHIK----GPTIVWFRKSLRLHDNPTLQRAVQL 77
Query: 106 SEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPE 165
+ + P++ +DP Y+ K G R +F++EC+ DL +L LL+ +G+P
Sbjct: 78 ASELFPLFILDP------YYINPDKIGFQRFRFMLECMKDLDHSLRKYQSKLLVIYGEPV 131
Query: 166 EIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWG 225
++ + K++ + +K++ N + V + ++ L Q +S G
Sbjct: 132 NVLENCCKTWKCSYLCFEKDSDIYSRNRDEKVLQRMKG--LGVQCFVES----------G 179
Query: 226 TTMYHLDDI--PFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDW-GSVPL 282
T+Y LD + + +S P T F K IE GPPP ++ ++P
Sbjct: 180 HTLYDLDMLVAKLNGNSPPTQMTSFLKFIE-------------QIGPPPKPIETVRNIPP 226
Query: 283 IEQLELHSPKVSK-----------------GMRFVGGESAALGRVNEYFWKKD---LLKV 322
+ + L S +SK F GGES AL R+ + ++ +++
Sbjct: 227 LRKELLSSISISKVPEIEEIPGYELITEPTPCPFQGGESKALERMQQALNREQGKWIVRF 286
Query: 323 YK-ETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE-RVANDSTYWVLFELMWR 380
K T L P +T SP++ G++S R + E+K E V ++ +L WR
Sbjct: 287 SKPHTSPVSLDPPSTTVLSPYIKCGALSVRLFFWELKRVEDSFSVKTKPPVSLIGQLYWR 346
Query: 381 DYFRFISLKYGNSLFHL----GGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSM 436
++F + G ++ H G P W Q+ F++W TGYP IDA M +L
Sbjct: 347 EHFYLL----GYTIPHFDQIQGNPLCKTIPWEHRQEWFQAWEQAQTGYPFIDAAMTQLKQ 402
Query: 437 TGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
G++ + R + FL R D+ I W G E FE L+D D N NW + + R
Sbjct: 403 WGWLHHLTRHVVACFLTRGDLWISWEKGKETFEKYLIDGDWSINAANWMWLSCSAFFTRY 462
Query: 496 DRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R +S + YD G Y+ Y+LP L+ +P
Sbjct: 463 FRVYSPIAFPKKYDPHGNYIRYFLPVLRNMP 493
>gi|432405530|ref|ZP_19648252.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE28]
gi|430932447|gb|ELC52870.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE28]
Length = 470
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 131/455 (28%), Positives = 221/455 (48%), Gaps = 44/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWAAHNVSPR----QAELINTQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R EI+ + A++ H Y Q E +VE
Sbjct: 59 LNALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R + P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGAIDPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + Y + H + +++ W + ++W++G TGYP++DA M+
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLKAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVP 427
>gi|386618155|ref|YP_006137735.1| Deoxyribodipyrimidine photolyase [Escherichia coli NA114]
gi|387828689|ref|YP_003348626.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
gi|432420783|ref|ZP_19663339.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE178]
gi|432498919|ref|ZP_19740696.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE216]
gi|432557689|ref|ZP_19794379.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE49]
gi|432693459|ref|ZP_19928671.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE162]
gi|432709505|ref|ZP_19944572.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE6]
gi|432917851|ref|ZP_20122334.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE173]
gi|432925157|ref|ZP_20127248.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE175]
gi|432980177|ref|ZP_20168956.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE211]
gi|433095601|ref|ZP_20281813.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE139]
gi|433104810|ref|ZP_20290830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE148]
gi|281177846|dbj|BAI54176.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
gi|333968656|gb|AEG35461.1| Deoxyribodipyrimidine photolyase [Escherichia coli NA114]
gi|430947255|gb|ELC66962.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE178]
gi|431031820|gb|ELD44553.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE216]
gi|431094124|gb|ELD99774.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE49]
gi|431236696|gb|ELF31901.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE162]
gi|431251674|gb|ELF45681.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE6]
gi|431446725|gb|ELH27469.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE173]
gi|431448629|gb|ELH29344.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE175]
gi|431494172|gb|ELH73762.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE211]
gi|431619115|gb|ELI88040.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE139]
gi|431634109|gb|ELJ02365.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE148]
Length = 472
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 224/462 (48%), Gaps = 44/462 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWAAHNVSPR----QAELINTQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R EI+ + A++ H Y Q E +VE
Sbjct: 59 LNALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R + P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGAIDPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + Y + H + +++ W + ++W++G TGYP++DA M+
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLKAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEP 434
>gi|206603959|gb|EDZ40439.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
'5-way CG']
Length = 534
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 211/477 (44%), Gaps = 52/477 (10%)
Query: 62 IVEETFGRYTSKALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ 121
I+E + K +IVWFRN+LR+LDN L +A + + LPV+ + Q
Sbjct: 41 ILETIVSVFPEAPTKTEAHISSIVWFRNNLRLLDNPPLREAAERGPL-LPVFVGEHPGKQ 99
Query: 122 TTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVY 181
P GA R + L L +L RG LL G P ++P LA A +
Sbjct: 100 -------PPEGA-RQWWQARSLRRLDHSLSRRGAPLLFLRGDPATLLPDLATRLKADKIL 151
Query: 182 AQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSL 241
A + + R + LQ + S +L L + D+P S
Sbjct: 152 AMEAIDPDG----RRTQSRLQGAL--------SGKPVELHLFPADYLISPADLPAGRRSP 199
Query: 242 PDVYTHFRKSIEAKCTVRGC---------IRIPSSFGPPPSVVDWGSVPLIEQLELHSPK 292
V+T F + ++ I P + P DWG P +P
Sbjct: 200 WKVFTPFWQRAQSHLPPPLPLPAPDRLDGIPFPRTETP----DDWGWEP-------ENPD 248
Query: 293 VSKGMR--FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISP 350
+ MR + GE A R++ + K+ L+ Y+ R + L D S+ SP LA+G IS
Sbjct: 249 WATEMRGFWDPGEEGAWRRLHAFLEKR--LENYR-VRRDFLEEDTSSLLSPHLANGEISI 305
Query: 351 RYIYEEVKSYERERVANDSTYW-VLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ 409
R ++ +K E A D L EL WR++ + + + + E +W +
Sbjct: 306 RSVWWAIK----ESTAPDKDREKFLSELGWREFSAHLMWHHPDLASERLHKERPEIRWRE 361
Query: 410 DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
D +W+ G TG PL+DA M++L GF+ NR R +A SFLV+++ IDWR G EWF
Sbjct: 362 DPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAASFLVKNLLIDWRKGREWFAD 421
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
L+D+DP +N +W + +G G D R F+ Q + +D EG YV +LP+L L
Sbjct: 422 NLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGRYVKTYLPELHGL 478
>gi|89891446|ref|ZP_01202951.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
gi|89516220|gb|EAS18882.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
Length = 440
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 126/471 (26%), Positives = 221/471 (46%), Gaps = 47/471 (9%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQF 138
K V I WFR D+R+ DN L+A S VLP++ D + H P+ A R F
Sbjct: 2 SKKVNIFWFRRDMRLDDNVGFLEALKSDYPVLPIFIFD---KEILDHL--PEDDA-RVTF 55
Query: 139 LIECLADLRKNLM-NRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
+ E L +R NL N +L +GKP I + ++ +AV+ ++ E ER +
Sbjct: 56 IYEELQRMRNNLQENHDSSLATFYGKPLNIWQEIIDNYEVNAVFTNRD--YEPYAQERDL 113
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ L+S N+++ K +Y DDI D VYT ++
Sbjct: 114 K-------LTSFFNEQNVAFHTFK---DQVIYEKDDIVKDDGDPYVVYTPYKN------- 156
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
+ +G ++ + ++ +S + + +G + +++ + EY
Sbjct: 157 -KWLENFRKDYGKADNLTIHYTNDYLDNCIKNSRLPNLNLSDIGFKKSSI-EIPEYNITP 214
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
L++ Y++TRN + +++ +L G +S R K ++ +AN+ T+ + EL
Sbjct: 215 TLIEDYEKTRNYPAMENGTSRLGVYLRFGVVSIR------KMMKKADLANEKTF--MSEL 266
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR++F I + +++ + + +W ++ FE W++G TGY ++DA M+EL+ T
Sbjct: 267 IWREFFMTILYHFPHTVDNAFRSKYDRIEWRNNESEFEKWKNGQTGYAIVDAGMRELNTT 326
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED- 496
G+M NR R + SFL + + IDWR G +F LLD+D +N GNW + AG G D
Sbjct: 327 GYMHNRVRMLVASFLCKHLLIDWRWGERYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYF 386
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHG 547
R F+ Q +D+ +Y+ W+P+ F Y+E++V K
Sbjct: 387 RIFNPITQKDKFDKNYKYIKQWVPE----------FETDDYVEKMVDHKEA 427
>gi|291454944|ref|ZP_06594334.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
gi|291357893|gb|EFE84795.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
Length = 457
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 138/486 (28%), Positives = 224/486 (46%), Gaps = 62/486 (12%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V+IV F +DLR+ D AL A D+++ V+P++ D ++ F P RA FL +
Sbjct: 3 VSIVLFTSDLRLHDQPALRAALDATDAVVPLFVRDDAVAEAG--FAAPN----RAAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL DL +L RG L+IR G E + + E ++E+++ V
Sbjct: 57 CLTDLDHSLRERGGRLVIRSGDLVEEVCRVVT-----------EADADEVHLAEGVSAFA 105
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMY----HLDDIPFDHSSLPDVY------THFRKS 251
++ + +S +L + G T + DH ++ Y H R
Sbjct: 106 RRREERLREALESEGR-RLFVHEGVTTALPPGAVTPASSDHFAVFTPYFRKWSEQHLRHP 164
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
+ A TVR +P G VP + VS G+ GGES GR
Sbjct: 165 LGAPRTVR----VPDGIGSE-------KVPARGDVR----GVSAGL-AAGGESE--GRDR 206
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
W + Y++ +++ G D +++ SP L G++S E V R+ A + +
Sbjct: 207 LTAWLRRDAGAYEDQHDDLAG-DATSRLSPHLHFGTLS---AAELVHRARRKEGAGATAF 262
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQD-QKLFESWRDGCTGYPLIDAN 430
+ +L WRD+ + ++ R+ ++ +D ++ E+WR+G TGYP++DA
Sbjct: 263 --VRQLCWRDFHHQVLAARPDASHADYRAREDHWRTGRDAEQETEAWREGRTGYPIVDAA 320
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ G+M NRGR +A SFL + + +DWR GA+ F + L+D D +N NW + AG G
Sbjct: 321 MRQLAHEGWMHNRGRLLAASFLSKTLYVDWRTGADHFLSLLVDGDIANNQMNWQWVAGTG 380
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------GGSYIEQI 541
D R R + +QA YD +G YV W+P+L + + + P G Y E +
Sbjct: 381 TDTRPHRVLNPVRQAHRYDPDGAYVRRWVPELAGVEGKAVHEPWTLEGFDRAGIDYPEPV 440
Query: 542 VSLKHG 547
V L G
Sbjct: 441 VGLSEG 446
>gi|254247729|ref|ZP_04941050.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
gi|124872505|gb|EAY64221.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
Length = 531
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 205/458 (44%), Gaps = 42/458 (9%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AIVWFR+DLRV D AL +A +S ++ V+ D T P G +L
Sbjct: 49 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFIDD------TGAGAGPALGGAARWWLHGS 102
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA L L G LL+ G + I + GA AVY + + + + ++ +L+
Sbjct: 103 LARLDTALARHGGRLLLLRGDAQREIERVVGDTGAAAVYWNRRYAQPQRDADAALKASLK 162
Query: 203 QVVLSSQSNDKST-NHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ +S++ S N P L Y V+T + ++ TV
Sbjct: 163 ARGVTVESSNGSLLNEPWEVLTGSGGPYQ-------------VFTAYWRAARRDRTVAAP 209
Query: 262 IRIPS--SFGP-PPSVVDWGSVPLIEQLELHSPKVSKGMR---FVGGESAALGRVNEYFW 315
+ P +F P P +V D L H+P + G+R E+ AL R++ +
Sbjct: 210 LPAPERIAFHPWPQAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFL- 268
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW--V 373
L Y + R+ P +++ SP+L G++SPR ++ V+ A + +
Sbjct: 269 -TTSLAGYADARDRPDRP-ATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKF 326
Query: 374 LFELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
L EL WR++ + F +L N W D +W+ G TGYPL+D
Sbjct: 327 LSELGWREFSYTLLYHFPALATDNFRAQFDA-----MPWRDDPAALRAWQRGRTGYPLVD 381
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A ++EL TG+M NR R + SFL++ + IDWR G WF L+D DP +N +W + AG
Sbjct: 382 AGLRELWTTGWMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAG 441
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G D R F+ Q Q D +G YV W+P+L L
Sbjct: 442 CGADAAPYFRIFNPVAQGQKCDPDGAYVRRWVPELAGL 479
>gi|453062216|gb|EMF03207.1| deoxyribodipyrimidine photolyase [Serratia marcescens VGH107]
Length = 476
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 132/468 (28%), Positives = 209/468 (44%), Gaps = 53/468 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN+AL A D VL V+ P+ Q H P+ AL +
Sbjct: 5 LVWLRNDLRITDNKALHAACSDPKARVLAVFIATPQ--QWRQHEMSPRQAAL----IHTS 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEEL-NVERLVRKNL 201
L +++ L +G+ L G A S A Y ++E N + + +
Sbjct: 59 LRAVQQALAQKGIALHCHAGT------DFAASIDWLADYCRREQVDALFYNRQYELNERR 112
Query: 202 QQVVLSSQSNDKSTNH---------PQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI 252
+ L Q N + T H P L G MY VYT FR +
Sbjct: 113 RDARLEQQLNGRVTCHGFDDSLLLPPGSVLTGGGEMYK-------------VYTPFRNAF 159
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
+ T +P+ P D P G + GE AAL R+
Sbjct: 160 IQRLTESDVSCLPA----PKIRADGALPAPEAPAAFDYPAADIGDDYPAGEEAALQRLRA 215
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND---S 369
+ ++ ++ Y R+ + ++ SP+LA G +SPR + +++ E ++ D
Sbjct: 216 FC--REQVQDYLRQRD-LPAIAGTSSLSPYLAIGMLSPRQCFNRLRA-ECPQLLEDRESG 271
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
+ L EL+WR+++R + + Y H + K+ +W D ++W+ G TGYP+
Sbjct: 272 AFAWLNELIWREFYRHLLVAYPELCRHRPFIAWTDKV--RWCDDAAKLQAWQRGETGYPI 329
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ TG+M NR R I+ SFLV+D+ IDWR G +F + LLD D +N G W +
Sbjct: 330 VDAAMRQLNATGWMHNRLRMISASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWA 389
Query: 487 AGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
A G D R F+ Q + +D +G ++ WLP+L +P + P
Sbjct: 390 ASTGTDAAPYFRIFNPTTQGERFDPQGTFIRKWLPELADVPDNDIHHP 437
>gi|359148080|ref|ZP_09181316.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. S4]
gi|421739387|ref|ZP_16177699.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SM8]
gi|406692211|gb|EKC95920.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SM8]
Length = 457
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 137/486 (28%), Positives = 224/486 (46%), Gaps = 62/486 (12%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V+IV F +DLR+ D AL A D+++ V+P++ D ++ F P RA FL +
Sbjct: 3 VSIVLFTSDLRLHDQPALRAALDATDAVVPLFVRDDAVAEAG--FAAPN----RAAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL DL +L RG L+IR G E + + E ++E+++ V
Sbjct: 57 CLTDLDHSLRERGGRLVIRSGDLVEEVCRVVT-----------EADADEVHLAEGVSAFA 105
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMY----HLDDIPFDHSSLPDVY------THFRKS 251
++ + +S +L + G T + DH ++ Y H R
Sbjct: 106 RRREERLREALESEGR-RLFVHEGVTTALPPGAVTPASSDHFAVFTPYFRKWSEQHLRHP 164
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
+ A TVR +P G VP + VS G+ GGES R+
Sbjct: 165 LGAPRTVR----VPDGIGSE-------KVPARGDVR----GVSAGL-AAGGESEGRDRLT 208
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
W + Y++ +++ G D +++ SP L G++S E V R+ A + +
Sbjct: 209 A--WLRRDAGAYEDQHDDLAG-DATSRLSPHLHFGTLS---AAELVHRARRKEGAGPAAF 262
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQD-QKLFESWRDGCTGYPLIDAN 430
+ +L WRD+ + ++ R+ ++ +D ++ E+WR+G TGYP++DA
Sbjct: 263 --VRQLCWRDFHHQVLAARPDASHADYRAREDHWRTGRDAEQETEAWREGRTGYPIVDAA 320
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ G+M NRGR +A SFL + + +DWR GA+ F + L+D D +N NW + AG G
Sbjct: 321 MRQLAHEGWMHNRGRLLAASFLSKTLYVDWRTGADHFLSLLVDGDIANNQMNWQWVAGTG 380
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP---------GGSYIEQI 541
D R R + +QA YD +G YV W+P+L + + + P G Y E +
Sbjct: 381 TDTRPHRVLNPVRQAHRYDPDGAYVRRWVPELAGVEGKAVHEPWTLEGFDRAGIDYPEPV 440
Query: 542 VSLKHG 547
V L G
Sbjct: 441 VGLSEG 446
>gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357828|ref|ZP_12960518.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689067|gb|EHI53615.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 473
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 216/454 (47%), Gaps = 36/454 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFRNDLR+ DN AL A + V ++ + P Q K +R QFL+ +
Sbjct: 3 LVWFRNDLRLADNPALRHACAEAGEVAALFVISPTQWQQH------KMAPIRQQFLLAQV 56
Query: 144 ADLRKNLMNRGLNL-LIRHGKPEEI---IPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+L K L G+ L L+R E+ + SL++ G +YA + +E + V
Sbjct: 57 DELGKALAALGIPLHLLRVETFAEMPTALASLSRELGVSQLYANQAIEIDEQRRDLAVSA 116
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + +S + P +++ G+ PF + L K++E V
Sbjct: 117 MLAEQEVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWL--------KALEEDGFV- 167
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSP--KVSKGMRFVGGESAALGRVNEYFWKK 317
R P+ P + W PL E+ + +V+ R+ GE+ A R++ + +
Sbjct: 168 -IHRAPAPRAEP---LPWQ--PLTEREWSYGALGEVTPDPRWPVGEAEAQRRLHAFL--E 219
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRY---IYEEVKSYERERVANDSTYWVL 374
+ Y+ETR+ ++ SP+LA+G ISPR + ++ + + A W L
Sbjct: 220 PAVLDYEETRD-FPAQAGTSILSPYLAAGIISPRQCVGVLQQRLGHRPQSKAQPGFVW-L 277
Query: 375 FELMWRDYFRFISLKYGNSLFHLG-GPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
EL+WR+++R + + +L P WS D F +W +G TGYP++DA M+
Sbjct: 278 NELVWREFYRHLLVLVPTLSMNLPFKPETATLPWSWDPVAFAAWCEGRTGYPIVDAAMRC 337
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L TG+M NR R I SFL +D+ I WR+G ++F + L+D D +N G W + AG G D
Sbjct: 338 LHATGWMHNRLRMIVASFLTKDLHIHWRLGEDYFMSQLIDGDLAANNGGWQWAAGTGADA 397
Query: 494 RED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q Q +D +G+++ W+ +L +P
Sbjct: 398 APYFRVFNPTTQGQRFDPQGDFIRTWVTELADIP 431
>gi|380513692|ref|ZP_09857099.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas sacchari
NCPPB 4393]
Length = 473
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 208/459 (45%), Gaps = 36/459 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AIVWFR DLR+ D AL A D+ +PVY P G GA +L
Sbjct: 4 AIVWFRRDLRLHDQPALQAALDAGHTPVPVYLHSPEDE------GAWAAGAASRSWLQRS 57
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA L L RG L++R G E + + A AVY + + +++ L+
Sbjct: 58 LAALDAQLRARGSRLILRQGPAEAALRQVIADCSAEAVYWNRRYEPATQPRDARLKRELR 117
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ L S++ + ++ + V+T F +S + V
Sbjct: 118 EQGLEVHSHNSAL------------LFEPWQLATQQGGPYKVFTPFWRSALSHWQVPALQ 165
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF----VGGESAALGRVNEYFWKKD 318
P + PPP+ +D S+PL E+L L +P + F GE+ A ++ +
Sbjct: 166 AAPKTLPPPPATLD--SLPL-ERLGL-APTLEWDRGFWEVWQPGEAGAHEALDVFV--DG 219
Query: 319 LLKVYKETRNEMLGPDY--STKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
L+ Y + R+ PD +++ SP L G I+P I ++ + R A ++ +
Sbjct: 220 ALRDYLDGRDR---PDQVGTSRLSPHLHFGEIAPWRIVATLERHRRAATAAAIDGYIR-Q 275
Query: 377 LMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ-DQKLFESWRDGCTGYPLIDANMKELS 435
L WRD+ + + ++ PR ++W+ D +W+ G TG P++DA ++EL
Sbjct: 276 LGWRDFAHHLLHHFPDTPERNLNPRFERFRWATPDPAQLHAWQRGRTGVPIVDAGLRELW 335
Query: 436 MTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE 495
TG+M NR R I S+L + + + W GA WF L+D D +N W + AG G D
Sbjct: 336 HTGWMHNRVRMIVASYLCKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAP 395
Query: 496 D-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ QAQ +D +GEY+A W+P+L ALP R P
Sbjct: 396 YFRVFNPVTQAQKFDPKGEYIARWVPELAALPLADRFAP 434
>gi|284173137|ref|ZP_06387106.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
gi|384432815|ref|YP_005642173.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
gi|261600969|gb|ACX90572.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
Length = 431
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 130/455 (28%), Positives = 208/455 (45%), Gaps = 81/455 (17%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + FR DLR+ DN L+KA + E V+P + +DPR + F+I
Sbjct: 2 LCLFIFRRDLRLDDNTGLIKALGNCEKVIPTFILDPRQVGDENQY----KSEFAINFMIN 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELNVERL---- 196
L +L L RG L + G EE+I SL K AVY ++ T ++ ER+
Sbjct: 58 SLNELNDELGKRGSRLYVYFGLAEEVIKSLLKD--VDAVYLNEDYTPFSKMRDERIRKYC 115
Query: 197 -----VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
V K+ + +L+S+++ K+ + TT Y+ + + YT++ K+
Sbjct: 116 EERGKVMKSFEDYLLTSKNDFKNYKN-------FTTFYNAVKNKQVRKPIQNNYTNYYKN 168
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
+ + PPS +G R GG L +
Sbjct: 169 -----------SLGDEYELPPS---------------------QGER--GGRKEGLKLI- 193
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
D K +R + + D T SP L G++S R +Y + V N +
Sbjct: 194 ------DRAKQIDYSRRDFVAEDNRTFLSPHLKFGTLSVREVYYSL-------VDNQA-- 238
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPLID 428
++ +L WRD++ ++ Y +F+ P + EY +W ++KL ++W G TGYP+ID
Sbjct: 239 -IIRQLYWRDFYTLLAY-YNERVFY--EPLRREYSCIEWGNNEKLLQAWVHGKTGYPIID 294
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG M NR R + FLV+ + IDW++G +F + L+DYDP N GNW + A
Sbjct: 295 AGMRQLNQTGDMPNRVRMLTAFFLVKVLLIDWKIGERYFASKLIDYDPSVNNGNWQWIAS 354
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
VG D R F KQ YD E +Y+ W+ +L+
Sbjct: 355 VGTDYIF-RVFDPWKQQITYDPEAKYIKRWVKELE 388
>gi|337755263|ref|YP_004647774.1| deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
gi|336446868|gb|AEI36174.1| Deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
Length = 468
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 214/455 (47%), Gaps = 47/455 (10%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQF 138
K +AI WFR DLR+ DN AL +A + E + ++ +D + G +
Sbjct: 2 SKKIAIHWFRQDLRLADNPALHQASQADETI-TIFILDENQ----------EIGGASKLW 50
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L L K+L NR L G P +II L K Y + C ++ +++R +
Sbjct: 51 LHHSLNSLNKSLDNR---LHFFRGNPLKIIKKLVKENNITDFYWNR--CYDKYSIDRDTQ 105
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
++Q + N S N L W D + VYT F K +
Sbjct: 106 --IKQFLQEQDINISSFNGSLLIEPWQCKK--------DDGTHYKVYTPFYKELIKIRKY 155
Query: 259 RGCIRIP--SSFGPPPSVVDWGSVPLIEQLELHSPKVSKGM---RFVGGESAALGRVNEY 313
R I P +S + D S+ L+E PK+S ++ GE A+ + E+
Sbjct: 156 RSNIAKPCFNSLEKLETAADLSSLKLLE------PKLSWQNIIDQWQIGEVASHQILEEF 209
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
K +K YK R + + D ++K SP+L G ISP I+ V+S + + N+ +++
Sbjct: 210 LDSK--VKEYKTAR-DFMSTDSTSKLSPYLHFGEISPNQIFNAVQSLDY--IGNNEEHFI 264
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WRD F + + Y L + +K + ++W D L + W+ G TG P++DA M+
Sbjct: 265 K-ELVWRD-FSYYQIYYYPELHNKNIDQKFDSFEWDNDPTLLKKWQTGHTGIPIVDAGMR 322
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
EL TG+M NR R I SFL+++ I W+ G +WF L D D SN NW + AG G D
Sbjct: 323 ELWQTGYMHNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLD 382
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ QA+ ++ EY+ ++P+LK LP
Sbjct: 383 AAPYFRIFNPVLQAEKFE-AFEYIRKYVPELKFLP 416
>gi|124025078|ref|YP_001014194.1| DNA photolyase [Prochlorococcus marinus str. NATL1A]
gi|123960146|gb|ABM74929.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A]
Length = 504
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 139/473 (29%), Positives = 221/473 (46%), Gaps = 61/473 (12%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+I W R DLR DN L +A +S+ ++ VY +DP T + FL E
Sbjct: 17 SIFWHRRDLRFGDNIGLFEASKNSKSLIGVYVLDPNLLDLNR-----TTSEAKNWFLGES 71
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +L+KN RG LLI +G P E+I LA+ A +Y + E+N ++ + +
Sbjct: 72 LLELQKNWEIRGSLLLILNGDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEK-- 129
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF-RKSIE----AKCT 257
LS + T QL + + DI ++ VY F RK I+ K +
Sbjct: 130 ---LSKEKRKVYTFLDQL-------IVNPSDIKTNNDEPYKVYGPFYRKWIDIINRTKSS 179
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHS--PKVSKGM-------RFVG------- 301
I+ S + ++ + I+ +L+ K SK + RF
Sbjct: 180 DNNLIQT-SETAKKLTGLNERELSSIKNSDLNYCITKKSKSIYELLSSNRFSNTSLCPCK 238
Query: 302 -GESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK-- 358
GES ++ ++N + ++ Y + R ++ + ++ S L+ G+IS R ++ +
Sbjct: 239 PGESESIKQLNSFI-HSGVINSYNQAR-DIPSLENTSNLSAALSLGTISCRAVWNGAQVS 296
Query: 359 --SYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHL----GGPRK---LEYKWSQ 409
S E N W+ EL WR++ Y N+L + GP + L + W
Sbjct: 297 KSSTHDEYKINSIDTWIK-ELAWREF-------YQNALINFPELEKGPYREKWLNFPWQN 348
Query: 410 DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
FE+W DG TG P+IDA M++L +G+M NR R I SFLV+D+ IDWR+G +F
Sbjct: 349 RPDWFEAWGDGLTGIPIIDAAMRQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMK 408
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL 522
L+D D +N G W + A G DP+ R F+ +QA +D +GEY+ W+P+L
Sbjct: 409 SLVDGDLAANNGGWQWSASSGMDPKPMRIFNPFRQASKFDEDGEYIRKWIPEL 461
>gi|227826669|ref|YP_002828448.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
gi|227458464|gb|ACP37150.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
Length = 433
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 130/458 (28%), Positives = 213/458 (46%), Gaps = 85/458 (18%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRH--SQTTYHFGFPKTGALRAQFL 139
+ + FR DLR+ DN L+KA + E V+P + +DPR ++ Y F F+
Sbjct: 2 LCLFIFRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFA------INFM 55
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELNVERL-- 196
I L +L L RG L + G EE+I +L K AVY ++ T ++ ER+
Sbjct: 56 INSLNELNDELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRK 113
Query: 197 -------VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
+ K+ + +L+S+++ K+ + TT Y++ + + YT++
Sbjct: 114 YCEDTGKIMKSFEDYLLTSKNDFKNYRN-------FTTFYNVVKNKQIRKPVQNNYTNYY 166
Query: 250 KSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGR 309
K+ S G ++ EL + +G R G + R
Sbjct: 167 KN---------------SLG--------------DEHELPPRQGERGGRKEGIKLIERAR 197
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
Y R + + D T SP L G++S R +Y + +
Sbjct: 198 QINY------------DRKDFVAEDNRTFLSPHLKFGTLSIREVYYSLLDSQA------- 238
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPL 426
++ +L WRD++ ++ Y +FH P K EY +W +++L ++W +G TGYP+
Sbjct: 239 ---IIRQLYWRDFYTLLAY-YNERVFH--EPLKREYNCIEWENNERLLQAWVEGKTGYPI 292
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
IDA M++L+ TG M NR R ++ FLV+ + IDWR+G ++F + L+DYDP N GNW +
Sbjct: 293 IDAGMRQLNRTGDMPNRVRMLSAFFLVKVLLIDWRIGEKYFASKLIDYDPSVNNGNWQWI 352
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKA 524
A VG D R F KQ YD E +YV W+ +L++
Sbjct: 353 ASVGTDYIF-RVFDPWKQQITYDPEAKYVKRWVDELES 389
>gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
Length = 472
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 133/492 (27%), Positives = 218/492 (44%), Gaps = 70/492 (14%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++WFR DLR+ D+ AL +A + V+PV+ D GA L E L
Sbjct: 9 LLWFRRDLRLSDHPALTQA-AARGPVIPVFIHDD---------SVAGLGAAPKWRLGEGL 58
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
A R L RG L++R G E++ L GA AVY + + + + V+ L
Sbjct: 59 AVFRDALAERGARLILRRGPAREVLERLIDETGATAVYWTRAYDPDAIERDSRVKAAL-- 116
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ ++ + P G ++ ++ + VY+ + ++++ + R +R
Sbjct: 117 ----ADRGTEACSFP------GHLIFEPWEVETQQGKMYQVYSPYWRAVKDREVDR-PLR 165
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVG-----GESAALGRVNEYFWKKD 318
P P W +E L + +++G V GE AA R+ + ++
Sbjct: 166 APDLSAP----SKWPDSEALEDWHLGA-GMNRGAAIVARHCTPGEGAAQSRLGAFSAQR- 219
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L+ YKE R +M D ++ S +L G ISPR ++ E E + + E++
Sbjct: 220 -LEDYKE-RRDMPAEDATSDMSQYLTLGEISPRQLWHAALRGEAEGKSGAEHF--RKEVV 275
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKW----------SQDQKLFESWRDGCTGYPLID 428
WR++ + ++H PR L+ W +D + W+ G TG +D
Sbjct: 276 WREFAYHL-------MYHT--PRLLDENWREGWEAFCWSEEDSEAVRRWKQGRTGVRFVD 326
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M+E+ +TG M NR R + S+L + M + WR+G +WF+ CL+D+DP SN W + AG
Sbjct: 327 AAMREMYVTGRMHNRSRMVVASYLTKHMLVHWRIGQKWFQDCLIDWDPASNSMGWQWVAG 386
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQ------------LKALPKERRNFPGG 535
G D R F+ Q + +DR+G YVA WL + A+P+ P
Sbjct: 387 CGPDASPYFRVFNPDTQLEKFDRDGRYVARWLAECSRSPSDTALSYFDAIPESWGLSPED 446
Query: 536 SYIEQIVSLKHG 547
Y E +V LK G
Sbjct: 447 DYPEPVVDLKEG 458
>gi|224004440|ref|XP_002295871.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209585903|gb|ACI64588.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 571
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 118/203 (58%), Gaps = 16/203 (7%)
Query: 335 YSTKFSPWLASGSISPRYIYEEVKSYERERVANDST-----YWVLFELMWRDYFRFISLK 389
+S+K S LA G++SPR IY VKS E+E++ N +T W++ L RDYF F S
Sbjct: 327 HSSKLSVPLALGTLSPRQIYRYVKS-EQEQLGNTTTSPDGIAWIINHLEIRDYFLFESFL 385
Query: 390 YGNSLFHLGGPRKLEYK------W---SQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
G + ++L G R +K W Q F W G T PL+DA M EL TG++
Sbjct: 386 NGKAAYNLQGRRPTAHKPNVQREWLSLHDGQDAFTRWTSGKTNLPLVDAGMNELIATGYI 445
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNR RQ S L +D+ IDWR+GAEWF+ L D+D +NYGNW Y AGVG DP+ +R+F
Sbjct: 446 SNRIRQNIVSVLTKDLTIDWRLGAEWFQLALEDHDVAANYGNWQYFAGVGGDPK-NRHFR 504
Query: 501 IPKQAQNYDREGEYVAYWLPQLK 523
QA YD G +V W+ +LK
Sbjct: 505 TVSQAWRYDARGVFVRKWIDRLK 527
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWD-SSEMVLPVYCVDPRHSQTT--------YHFGFPKTGAL 134
++W R DLR+ DNE A S V PR + + Y + G
Sbjct: 6 LIWHRRDLRLADNELYSNAAKIYSLFVFDTADYTPRSTGISAGGDRGDDYVYNV-NNGPH 64
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAV-YAQKETCSEELNV 193
+ L+E + LR NL + G +L++RHG P EIIPSLAK V +++ E +
Sbjct: 65 FTRRLLEAVHSLRNNLRDLGGDLIVRHGNPLEIIPSLAKELQVEEVAWSEVPGYYEWVQS 124
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSS 240
E+L + +L +++ + ++ TT+ H DD+P D +
Sbjct: 125 EKL------KQILMDGADEGYAHRRKICTSVTTTLMHPDDLPKDQPT 165
>gi|403057695|ref|YP_006645912.1| deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402805021|gb|AFR02659.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 488
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 133/461 (28%), Positives = 216/461 (46%), Gaps = 49/461 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLRV DN AL A D + VL V+ P +Q H P+ A FL+E
Sbjct: 5 VVWLRNDLRVTDNLALYAACQDPNATVLAVFIATP--AQWEKHDMAPRQAA----FLLEN 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
L +++ L +G+ L + + A+ Y + +E L ++ V
Sbjct: 59 LTLVQQALAEKGIPLHYHESADFSASVDWLAQFCAQQQATDLFYNYQYEINERLR-DKQV 117
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS-----I 252
+ L V+ +D P L MY V+T FR++ +
Sbjct: 118 KDRLADSVVCHGYHDSLLLPPGSVLTGNGEMYK-------------VFTPFRQAFIKRLL 164
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
E+ T C+ P + G P + + +Q E+ G F GE AAL ++
Sbjct: 165 ESDTT---CVPAPDARGEPINNTVELAPFSYQQREV------DGDDFPSGERAALQQLRR 215
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY---ERERVANDS 369
+ ++ ++ Y + R+ P ++K SP LA G +SPR + +++ ER +
Sbjct: 216 FC--REQVQDYDQQRDFPALPG-TSKLSPHLALGIVSPRQCFNRLRAECPEMLERREGGA 272
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPLID 428
W EL+WR+++R + + + H ++ KW + + +W+ G TGYP++D
Sbjct: 273 FTW-FNELVWREFYRHLIVSWPQLCKHRPFTAWTQWVKWRESPEDLAAWQQGKTGYPIVD 331
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG+M NR R I SFLV+D+ IDWR G +F + LLD D +N G W + A
Sbjct: 332 AAMRQLNETGWMHNRLRMICASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAAS 391
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D R F+ Q + +D EG ++ +WLP+L A+P +
Sbjct: 392 TGTDAAPYFRIFNPTTQGERFDPEGRFIRHWLPELAAVPDK 432
>gi|422970547|ref|ZP_16974059.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TA124]
gi|371600327|gb|EHN89102.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TA124]
Length = 472
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 131/453 (28%), Positives = 218/453 (48%), Gaps = 40/453 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R EI+ + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIDPAPSIT------------LNYPRQPFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVP 427
>gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
Length = 474
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 131/469 (27%), Positives = 214/469 (45%), Gaps = 59/469 (12%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + W R DLR+ DN L A++ S ++ V+C+DP + R ++I
Sbjct: 4 LILFWHRRDLRISDNVGLAAAFELSPKLVGVFCLDPTILERD------DIAPARVTYMIG 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L++ G LLI H P + IP+LA + A AV +VE ++
Sbjct: 58 CLEQLQQGYRQAGSQLLILHQDPRQGIPNLAAALEAKAV-------CWNWDVEPYSKERD 110
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP-DVYTHFRKS--------- 251
Q V + + + W ++ +I F S P VYT F K+
Sbjct: 111 QDVAAGLKEKGIAVYN-----YWDQLLHAPGEI-FTKSGNPYSVYTPFWKNWQGQSKAEP 164
Query: 252 ------IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESA 305
+E+ + + + PS +D G V + EL P GE
Sbjct: 165 VATLTRVESLTEIEQDNALAAGVTDLPSAIDLGYV---WENELLVPP---------GEKV 212
Query: 306 ALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS---YER 362
A + E+ + Y E RN G D ++K S L G I R +++ ++ R
Sbjct: 213 AQEILEEFC--DRTIGDYHEQRN-FPGVDGTSKLSAALKFGVIGIRRVWQAAQNAYNLSR 269
Query: 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYK---WSQDQKLFESWRD 419
A S EL WR++++ ++ + L GP + +++ W + + F++W +
Sbjct: 270 SDEARQSIQTWQQELAWREFYQH-AMYFFPELAQ--GPYRQKFQDFPWDNNPEFFQAWCE 326
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TGYP++DA M++L+ TG+M NR R I SFL +D+ I+W+ G ++F L D D +N
Sbjct: 327 GKTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQRLSDGDLSAN 386
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G W + A G DP+ R F+ QA+ +D +GEY+ WLP+L ++ E
Sbjct: 387 NGGWQWSASSGMDPKPLRIFNPASQAKKFDPDGEYIREWLPELSSVDTE 435
>gi|156976349|ref|YP_001447255.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
gi|156527943|gb|ABU73028.1| hypothetical protein VIBHAR_05122 [Vibrio harveyi ATCC BAA-1116]
Length = 471
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 221/458 (48%), Gaps = 45/458 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI--- 140
+VWFR DLR LD+ AL A D+ + V+ + P Q H P L A+ L+
Sbjct: 3 LVWFRRDLRTLDHTALKAALDTGQPVVAAFVSTPEQWQE--HNMAPMQADLIARRLVHLD 60
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
E LADL L+ + + + +I A S A +V A E ++R +
Sbjct: 61 EELADLNIPLLYKEVP---KFSDVTGVIKGWALSLNAKSVMANIHYEVNEQALDREIADV 117
Query: 201 LQQVVLSSQS-NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
L + ++ ++ +DK + P TT+ + F V+T F+++ K
Sbjct: 118 LAKSQVTFEAFHDKCVHAP-------TTVLNKQGEYFK------VFTPFKRAWLLK---- 160
Query: 260 GCIRIPSSFGPPP--SVVDWGSVPLIEQLELHS------PKVSKGMRFVGGESAALGRVN 311
++P P P ++ + PL E H+ P+ S FV S + +
Sbjct: 161 --FQMPMVSKPQPQAEILQEATQPL-EADRYHADVPFTYPRESSEQWFVST-SDIVHHLR 216
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
E+ ++ Y+E R+ + D +++ SP+LA G++SPR + + D
Sbjct: 217 EF--ARERSDAYQEKRD-LPSVDGTSQLSPYLAIGALSPRQCIARLYAENPHTDLTDGKA 273
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGG--PRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
L E++WR++++ + L + L G P + + +WS D+ FE W+ G TGYP++DA
Sbjct: 274 TWLSEIIWREFYQHL-LVFEPKLVKGKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDA 332
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ TG+M NR R I SFL +D+ IDWR G +F + L+D D +N G W + A
Sbjct: 333 AMRQLNTTGWMHNRLRMIVASFLTKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSAST 392
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
G D + R F+ Q + +D +G +V YW+P++K +P
Sbjct: 393 GCDGQPYFRIFNPISQGEKFDSDGAFVRYWVPEIKQVP 430
>gi|352095147|ref|ZP_08956250.1| Deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8016]
gi|351679158|gb|EHA62300.1| Deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8016]
Length = 492
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 136/474 (28%), Positives = 215/474 (45%), Gaps = 65/474 (13%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A + S V VY +DP P R FL+E L
Sbjct: 7 LFWHRRDLRLADNLGLQAAVEISPAVTGVYVLDPALIHPPESL--PPMAPARLWFLVETL 64
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L++ + G LL+ G P +++P LA A AV + +VE R+ +Q
Sbjct: 65 RELQQRWRDVGSRLLVVAGDPVQVLPRLASLLEAPAVVWSR-------DVEPYSRERDRQ 117
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V + QS+ + ++ + W + D I V+ F ++ +
Sbjct: 118 VAKALQSDGR-----KVLVDWDQLLLAPDLIKTGGGDPYRVFGPFLRNWRGQVERSQ--- 169
Query: 264 IPSSFGPPPSVVDWGSVPLIE---------------QLELHSPKVSKGMRFVG------G 302
P + P + +D + L + Q +L + G R G
Sbjct: 170 -PRTAEAPNAFIDLEAESLEDLLGGEGALGRLCAEGQRQLEQLQAEHGFRGTDLCPSRPG 228
Query: 303 ESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIY------EE 356
E+AA R F + LL Y+ RN G ++ S L+ G++SPR + +E
Sbjct: 229 EAAA-ARQLATFADRALL-AYEPDRN-FPGIPGTSYLSAGLSVGTVSPRQAWCAAQGAKE 285
Query: 357 VKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFH----LGGPRKLEYK---WSQ 409
+ + +R A T W EL WR++ Y +LFH + GP + +++ W
Sbjct: 286 MARSDEQRQA--ITVWEQ-ELCWREF-------YQQALFHFPELVDGPYREQWRRFPWEN 335
Query: 410 DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
++ FE+W++G TG P+IDA M++L+ +G+M NR R I SFLV+D+ DWR G F
Sbjct: 336 NRDWFEAWKEGQTGMPIIDAAMRQLNQSGWMHNRCRMIVASFLVKDLICDWRWGERAFME 395
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLK 523
+D D +N G W + A G DP+ R F+ QA +D EGEY+ W+P+L+
Sbjct: 396 LEVDGDLAANNGGWQWSASSGMDPKPLRIFNPATQASKFDAEGEYIREWVPELR 449
>gi|319795849|ref|YP_004157489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS]
gi|315598312|gb|ADU39378.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS]
Length = 499
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/455 (27%), Positives = 213/455 (46%), Gaps = 39/455 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
++WFR DLRV DN AL +A + V+ V+ D + R +F+ E L
Sbjct: 16 LMWFRRDLRVDDNAALYRALRACRQVVCVFVFDKAILDPL------PSADRRVEFIRESL 69
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L+ L L++RH + IP+LA G AV+A ++ + L + V L
Sbjct: 70 LELQAELGALSGGLIVRHSHAVQEIPALASDLGVQAVFANRDDEPDALERDAKVLGALAN 129
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
++ + ST + +++ T + P+ + L V + F K + +
Sbjct: 130 AGIAFHTYKDSTVFDRDEVLTKTGQPYTVFTPYKRAWLAKVDSFFLKPYPVRGHADALVP 189
Query: 264 IPSSFGPP-PSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
P ++ P PS+ + G E+ L + ++ G S G + E F+++ +
Sbjct: 190 PPQAYREPMPSLGELG----FEKTNLSALEIPTG-------SLGAGVLFEDFFER--IDR 236
Query: 323 YKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
Y E RN + GP Y L G++S R + + A +T+ L EL+WR
Sbjct: 237 YDEARNFPAVRGPSY---MGVHLRFGTVSIRQVASVAHQLSLQGNAGAATW--LSELIWR 291
Query: 381 DYFRFISLKYGNSLFHLGG------PRKLEYKWSQDQ---KLFESWRDGCTGYPLIDANM 431
D++ I + + H G P + +W + +L ++W +G TGYPL+DA M
Sbjct: 292 DFYFQILTHFPH--VHKDGESKSFRPEYDKIQWHHGKHADQLLDAWCEGRTGYPLVDAAM 349
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+++ +G+M NR R + SFL +D+G+DWR G +F L D++ SN G W + + G
Sbjct: 350 LQINQSGYMHNRLRMVVASFLCKDLGLDWRRGERYFALHLNDFELASNNGGWQWASSSGC 409
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
D + R F+ Q++ +D EG+++ +LPQL L
Sbjct: 410 DAQPYFRIFNPVTQSERFDPEGKFIRRYLPQLARL 444
>gi|425771501|gb|EKV09943.1| hypothetical protein PDIP_62750 [Penicillium digitatum Pd1]
gi|425776953|gb|EKV15150.1| hypothetical protein PDIG_28310 [Penicillium digitatum PHI26]
Length = 582
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 145/503 (28%), Positives = 241/503 (47%), Gaps = 53/503 (10%)
Query: 48 CQV-IPGADSREINHIVEETFGRYTSKALKRNGKGVAIV-WFRNDLRVLDNEALLKAWD- 104
CQ I G R I + + R T+ + G A+V WF++DLR+ D+ AL A+
Sbjct: 58 CQAYIDGELERPIETL--QNACRETADKRRSIDVGNAVVHWFKSDLRLHDSRALYTAYQI 115
Query: 105 SSEMVLPV---YCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLI-- 159
S E +P+ Y V P T H T R F + L L+++L + L +
Sbjct: 116 SKEKQVPLIGLYIVSP--EDWTAHL----TSPARVDFTLRTLKRLQQDLGELDIPLYMET 169
Query: 160 ---RHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE-RLVRKNLQQVVLSSQSNDKST 215
R PE I+ L + +GA +++A E +EL E +LVR ++ + + ++D
Sbjct: 170 QVKRKAIPERIV-ELCQQWGAKSLFANIEYEVDELRRESKLVRLCVESDINFTPTHDTCV 228
Query: 216 NHPQLKLIWGTTMYHLDDIPFDHSSL------PDVYTHFRKSIEAKCTVRGCIRIPSSFG 269
P + Y + P+ S L PD + + E + G R F
Sbjct: 229 VTPGMLASQQGKQYSVY-TPWYRSWLAFLKENPD----YLEVSEEPGSNSGNAR--QQFK 281
Query: 270 PPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFWKKDLLKVYKETR 327
+ D VP ++ L S + K + GE AL R++ + +K K Y+E R
Sbjct: 282 ---DLFD-CQVPATPKMYLLSDEDQKRFEKLYPAGEHEALQRLDNFLEEKG--KKYEEFR 335
Query: 328 NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA-NDSTYWV-LFELMWRDYFRF 385
+ ML ++++ SP+ A G++S R K + + +D Y + EL WRD+++
Sbjct: 336 S-MLSGEHTSALSPYFACGALSARTAVVAAKRTNKGHLDRHDPGYMTWISELAWRDFYKH 394
Query: 386 ISLKYG----NSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMS 441
+ + + N F P +W D+ LF++W DG TG+P++DA M++L +M
Sbjct: 395 VLVNWPFICMNKCFK---PEHTNIEWEYDKDLFQAWCDGKTGFPIVDAAMRQLRHCAWMH 451
Query: 442 NRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFS 500
NR R + SFL +D+ +DWR G +F L+D D SN+G W +G+ G DP+ R F+
Sbjct: 452 NRTRMVVSSFLTKDLMLDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPYFRIFN 511
Query: 501 IPKQAQNYDREGEYVAYWLPQLK 523
+Q++ +D EG+Y+ W+P+L+
Sbjct: 512 PLRQSERFDPEGDYIRQWVPELR 534
>gi|229578080|ref|YP_002836478.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
gi|228008794|gb|ACP44556.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
Length = 433
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 210/460 (45%), Gaps = 81/460 (17%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ + FR DLR+ DN L+KA + E V+P + +DPR + F+I
Sbjct: 2 LCLFIFRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEY----KSEFAINFMIN 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKE-TCSEELNVERL---- 196
L +L L RG L + G EE I +L K AVY ++ T ++ ER+
Sbjct: 58 SLNELNDELRKRGSRLYVYFGLAEEEIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYC 115
Query: 197 -----VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS 251
+ K+ + +L+S+++ K+ + TT Y++ + + YT++ K+
Sbjct: 116 EDTGKIMKSFEDYLLTSKNDFKNYRN-------FTTFYNVVKNKQIRKPVQNNYTNYYKN 168
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
S G ++ EL + +G R G + R
Sbjct: 169 ---------------SLG--------------DEHELPPRQGERGGRKEGIKLIERARQI 199
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
Y R + + D T SP L G++S R +Y + +
Sbjct: 200 NY------------DRKDFVAEDNRTFLSPHLKFGTLSIREVYYSLLDSQA--------- 238
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQDQKLFESWRDGCTGYPLID 428
++ +L WRD++ ++ Y +FH P K EY +W +++LF++W +G TGYP+ID
Sbjct: 239 -IIRQLYWRDFYTLLAY-YNERVFH--EPLKREYNCIEWENNERLFQAWLEGKTGYPIID 294
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG M NR R + FLV+ + IDWR+G ++F + L+DYDP N GNW + A
Sbjct: 295 AGMRQLNRTGDMPNRVRMLTAFFLVKVLIIDWRIGEKYFASKLIDYDPSVNNGNWQWIAS 354
Query: 489 VGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
VG D R F KQ YD E +Y+ W+ +L++ E
Sbjct: 355 VGTDYIF-RVFDPWKQQVTYDPEAKYIKRWVDELESYDAE 393
>gi|448240986|ref|YP_007405039.1| FAD-binding deoxyribodipyrimidine photolyase [Serratia marcescens
WW4]
gi|445211350|gb|AGE17020.1| FAD-binding deoxyribodipyrimidine photolyase [Serratia marcescens
WW4]
Length = 476
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 131/468 (27%), Positives = 210/468 (44%), Gaps = 53/468 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN+AL A D VL V+ P+ Q H P+ AL +
Sbjct: 5 LVWLRNDLRITDNKALHAACSDPKARVLAVFIATPQ--QWRQHEMAPRQAAL----IHAS 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEEL-NVERLVRKNL 201
L +++ L +G+ L A S A Y ++E N + + +
Sbjct: 59 LRAVQQALAQKGIALHC------HACSDFAASIDWLADYCRREQVDALFYNRQYELNERR 112
Query: 202 QQVVLSSQSNDKSTNH---------PQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI 252
+ L Q N + T H P L G MY VYT FR +
Sbjct: 113 RDARLEQQLNGRVTCHGFDDSLLLPPGSVLTGGGEMYK-------------VYTPFRNAF 159
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
+ T +P+ P D + P G + GE AAL R+
Sbjct: 160 IQRLTESDVSCLPA----PKIRADGALLAPEAPAAFDYPAADIGNDYPAGEEAALQRLRA 215
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAND---S 369
+ ++ ++ Y R+ + ++ SP+LA G++SPR + +++ E ++ D
Sbjct: 216 FC--REQVQDYLRQRD-LPAIAGTSSLSPYLAIGALSPRQCFNRLRA-ECPQLLEDRESG 271
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
+ L EL+WR+++R + + Y H + K+ +W D ++W+ G TGYP+
Sbjct: 272 AFAWLNELIWREFYRHLLVAYPELCRHRPFIAWTDKV--RWCDDAAKLQAWQRGETGYPI 329
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ TG+M NR R I+ SFLV+D+ IDWR G +F + LLD D +N G W +
Sbjct: 330 VDAAMRQLNATGWMHNRLRMISASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWA 389
Query: 487 AGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
A G D R F+ Q + +D +G ++ WLP+L +P + P
Sbjct: 390 ASTGTDAAPYFRIFNPTTQGERFDPQGTFIRKWLPELADVPDNDIHHP 437
>gi|434375590|ref|YP_006610234.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874147|gb|AFQ26314.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 138/481 (28%), Positives = 224/481 (46%), Gaps = 53/481 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV F+ D R+ DN AL +A S E VLPVY D S G+ +L +
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE-VLPVYIQDETFS----------IGSAAKWWLHHAI 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ- 202
D++K L G +IR+GK +E I SL + AVY + L + ++ L+
Sbjct: 55 IDVQKQLKALGSTFIIRNGKTQEEILSLIEQLDITAVYWNICYDPDRLKSNQKMKMMLED 114
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ ++ + N P + T Y V+T F + + + +
Sbjct: 115 KGIICKEFNSHLLLEPGIIKKKDNTEY-------------KVFTPFYNAFQKQVIPKPIR 161
Query: 263 RIPSSFGPPPSVVDWG-SVPL-IEQLELHS-PKV--SKGMRFVGG--ESAALGRVNEYFW 315
++ S + WG S+P + ELH P + + M + E A ++F
Sbjct: 162 KVQS--------IKWGNSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKAFKKFFS 213
Query: 316 KKDLLKVYKETRNEMLGPDYSTK--FSPWLASGSISPRYIYEEV--KSYERE-RVANDST 370
K L Y E R+ P+ +T +P+L+ G IS ++Y + KS ER+ + +
Sbjct: 214 SK--LASYSEGRD---FPNQNTHSMLAPYLSFGQISVSWMYHYLINKSTERQCSLFEEQV 268
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
+ +L+WR++ ++ Y +++ + W ++++L W+ G TGYP IDA
Sbjct: 269 NSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAG 328
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M+EL TGFM NR R SFLV+ + I W+ GA+WF LLD D +N W + AG G
Sbjct: 329 MRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSG 388
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--GGSYIEQIVSLKHG 547
D R F+ Q + +D+ GEY+ W+P+L+ +P + + P +I Q V++K G
Sbjct: 389 ADASPYFRIFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKVNIKLG 448
Query: 548 N 548
N
Sbjct: 449 N 449
>gi|209917958|ref|YP_002292042.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
gi|293432976|ref|ZP_06661404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
gi|300823005|ref|ZP_07103140.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
gi|331667072|ref|ZP_08367937.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
TA271]
gi|331676388|ref|ZP_08377085.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H591]
gi|417224714|ref|ZP_12028005.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.154]
gi|417268307|ref|ZP_12055668.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.3884]
gi|417601042|ref|ZP_12251624.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_94C]
gi|418042784|ref|ZP_12680971.1| FAD binding domain of DNA photolyase [Escherichia coli W26]
gi|419390104|ref|ZP_13930941.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15A]
gi|419395276|ref|ZP_13936059.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15B]
gi|419400630|ref|ZP_13941361.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15C]
gi|419405803|ref|ZP_13946505.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15D]
gi|419411294|ref|ZP_13951965.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15E]
gi|419952321|ref|ZP_14468492.1| deoxyribodipyrimidine photolyase [Escherichia coli CUMT8]
gi|422351612|ref|ZP_16432424.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3]
gi|423708633|ref|ZP_17683011.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B799]
gi|432375819|ref|ZP_19618828.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE12]
gi|432480087|ref|ZP_19722050.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE210]
gi|432830684|ref|ZP_20064268.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE135]
gi|432833730|ref|ZP_20067273.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE136]
gi|432966809|ref|ZP_20155726.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE203]
gi|209911217|dbj|BAG76291.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
gi|291323795|gb|EFE63217.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
gi|300524546|gb|EFK45615.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
gi|324020349|gb|EGB89568.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3]
gi|331065428|gb|EGI37321.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
TA271]
gi|331075881|gb|EGI47178.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H591]
gi|345353048|gb|EGW85284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_94C]
gi|378242867|gb|EHY02815.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15A]
gi|378250753|gb|EHY10656.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15B]
gi|378250935|gb|EHY10836.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15C]
gi|378257086|gb|EHY16928.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15D]
gi|378260971|gb|EHY20768.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15E]
gi|383474279|gb|EID66271.1| FAD binding domain of DNA photolyase [Escherichia coli W26]
gi|385707354|gb|EIG44385.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B799]
gi|386199762|gb|EIH98753.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.154]
gi|386230665|gb|EII58020.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.3884]
gi|388412776|gb|EIL72813.1| deoxyribodipyrimidine photolyase [Escherichia coli CUMT8]
gi|430900924|gb|ELC22938.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE12]
gi|431009754|gb|ELD24364.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE210]
gi|431379712|gb|ELG64637.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE135]
gi|431387713|gb|ELG71535.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE136]
gi|431474001|gb|ELH53824.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE203]
Length = 472
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 222/462 (48%), Gaps = 44/462 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR +T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWET--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGDYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + Y + H + +++ W + ++W+ G TGYP++DA M+
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 393 AAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|433459950|ref|ZP_20417586.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
gi|432192066|gb|ELK48979.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
Length = 474
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/466 (26%), Positives = 207/466 (44%), Gaps = 53/466 (11%)
Query: 85 VWFRNDLRVLDNEALLKAW----DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
VWFR DLR+ DN AL KA D E++L + H ++ R +
Sbjct: 6 VWFRRDLRLQDNTALAKALEHTKDGDELLLFFHI----------HPALNESFTARHDYFF 55
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ LA + + G + G E+ +L ++ G VY ++ ER K
Sbjct: 56 QTLASFVEKAEDAGAPVHFITGDTEDAFENLIETAGIDMVYFNRDETG--FGYER--DKQ 111
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS--------- 251
+++ V S D H I G D++ V+T + K
Sbjct: 112 VEKYVTSL---DVDVYHYLDHHIHGA-----DEVKKQDGGFYKVFTPYLKKWKQLPKPAV 163
Query: 252 --IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGR 309
++ + + + +SF S L+E++E V GE+ A R
Sbjct: 164 QKVDDELLKKAAVDERASFKEGESAY----ADLLEKIEADFGGV--------GEADAWAR 211
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ E F D+ + R + D ++ S +L +G+IS R +Y ++ R +
Sbjct: 212 L-EQFLDADIYDY--DERRDFPAVDGTSLMSRYLRTGAISVRSVYHQIHDQVDFRKKTEG 268
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
+ EL WRD++ I Y N+ + W+ D+ + E W++G TG+P+IDA
Sbjct: 269 VETYISELAWRDFYNMIYHFYPNAHDEEVVEKYQGIPWNNDEDVLERWKEGRTGFPIIDA 328
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L+ +G+M NR R SFL +D+ +DWR G +F+ L+DYDP SN G W + A
Sbjct: 329 AMRQLNESGWMHNRLRMAVASFLTKDLLMDWRKGERYFQEKLVDYDPASNIGGWQWAAST 388
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPG 534
G DP R F+ +Q++ +D G ++ WLP+L+ +PK+ + P
Sbjct: 389 GTDPVPYFRVFNPTRQSERFDPHGRFIKEWLPELRDVPKKYIHEPA 434
>gi|419288166|ref|ZP_13830281.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11A]
gi|419293503|ref|ZP_13835562.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11B]
gi|378135668|gb|EHW96971.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11A]
gi|378145700|gb|EHX06856.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11B]
Length = 472
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 219/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W+ G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAMHEP 434
>gi|242238580|ref|YP_002986761.1| deoxyribodipyrimidine photolyase [Dickeya dadantii Ech703]
gi|242130637|gb|ACS84939.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech703]
Length = 477
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/454 (27%), Positives = 214/454 (47%), Gaps = 40/454 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFRNDLR+ DN AL A D V V+ P Q H P+ AL L +C
Sbjct: 5 LVWFRNDLRITDNLALYAACQDPEAQVEAVFIATP--GQWKRHEMAPRQAAL----LFDC 58
Query: 143 LADLRKNLMNRGLNLLIRHGK----PEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
+ L++ L +G+ L + E + +L + A ++ ++ E ++ +
Sbjct: 59 VLQLQRALYEKGIPLHYHQCEDFDGALEWLAALCRQRQATHLFYNRQYEWNEQRRDQALS 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
++L+ V +D P + MY V+T FR + +
Sbjct: 119 RHLENGVRIQAFDDSLLLAPGSVVTGSGEMY-------------KVFTPFRTAF-----I 160
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
++ + P P+ PL P++ F GE+AAL R+ ++ ++
Sbjct: 161 TQLLQTSTDSVPAPTARRQPLPPLTPPAPFDYPQLDVAGDFPAGEAAALQRLRQFC--RE 218
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN--DSTYWVLFE 376
+ VY E R+ P +++ SP+LA G +SPR + +++ + +A + E
Sbjct: 219 QVHVYHELRDVPSRPA-TSRLSPYLALGVLSPRQCFNRLRAEHPDWLAQREGGAFCWFNE 277
Query: 377 LMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKE 433
L+WR+++R + + + H + ++ ++ S Q+L +W+ G TGYP++DA M++
Sbjct: 278 LVWREFYRHLLVFHPALCRHRPFIAWTDRVVWR-SAPQELL-AWQRGETGYPIVDAGMRQ 335
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L TG+M NR R I SFLV+D+ IDWR G +F + LLD D +N G W + A G D
Sbjct: 336 LHQTGWMHNRLRMICASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDA 395
Query: 494 RED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D G+++ W+P+L +P
Sbjct: 396 APYFRIFNPTTQGERFDPNGDFIRRWVPELAGVP 429
>gi|417627628|ref|ZP_12277875.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_MHI813]
gi|345377932|gb|EGX09863.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_MHI813]
Length = 472
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/468 (28%), Positives = 221/468 (47%), Gaps = 51/468 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R E + A++ H Y + +E +++VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RALRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + + + H E +W + ++W++G TGYP++DA M+
Sbjct: 273 LNELIWREFYRHLITYHPSLCKHCPFIAWTERVQWQSNPAHLQAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ I+WR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLINWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIE 539
R F+ Q + +DREGE++ WLP+L RN PG S E
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPEL-------RNVPGKSVHE 433
>gi|417230088|ref|ZP_12031674.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0959]
gi|386206578|gb|EII11084.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0959]
Length = 472
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 131/460 (28%), Positives = 221/460 (48%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I+ SFLV+++ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMISASFLVKELLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|417706215|ref|ZP_12355278.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri VA-6]
gi|420329812|ref|ZP_14831516.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-1770]
gi|333007384|gb|EGK26864.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri VA-6]
gi|391259019|gb|EIQ18100.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-1770]
Length = 472
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 222/464 (47%), Gaps = 48/464 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR DLR+ DN AL A +SS VL +Y PR +T H P+ +A+ +
Sbjct: 5 LAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWET--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R E + A++ H Y + +E +++VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RALRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--ENGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L EL+WR+++R + Y + H + +++ W + ++W+ G TGYP+IDA
Sbjct: 273 LSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIIDAA 330
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 331 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTG 390
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 391 TDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
Length = 476
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 138/473 (29%), Positives = 216/473 (45%), Gaps = 37/473 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV F+ D R+ DN AL +A S E VLPVY D S G+ +L +
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE-VLPVYVQDETFS----------IGSAAKWWLHHAI 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ- 202
D++K L G L+IR G +E I SL K AVY + L + ++ L+
Sbjct: 55 IDVQKQLKALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILED 114
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR-GC 261
+ ++ + N P + T Y + PF Y F+K + K R
Sbjct: 115 KGIICKEFNSHLLLEPWIIKKKDNTEYKVFT-PF--------YNAFQKQVIPKPISRVQS 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
I+ SS SV + +P I H + + E A ++F K L
Sbjct: 166 IKWGSSLPASLSVSELHLLPTIPWTS-HMEAI-----WEPTEEGAYKTFKKFFSSK--LA 217
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERE-RVANDSTYWVLFELM 378
Y E R+ + + +P+L+ G IS + +Y + KS ER+ + +L+
Sbjct: 218 SYSEGRD-FPNQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI 276
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++ ++ Y +++ + W+++++L W+ G TGYP IDA M+EL TG
Sbjct: 277 WREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTG 336
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
FM NR R SFLV+ + I W+ GA+WF LLD D +N W + AG G D R
Sbjct: 337 FMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFR 396
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--GGSYIEQIVSLKHGN 548
F+ Q + +D+ GEY+ W+P+L+ +P + + P +I Q ++K GN
Sbjct: 397 IFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGN 449
>gi|398794137|ref|ZP_10554321.1| deoxyribodipyrimidine photolyase [Pantoea sp. YR343]
gi|398209097|gb|EJM95781.1| deoxyribodipyrimidine photolyase [Pantoea sp. YR343]
Length = 475
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 208/461 (45%), Gaps = 53/461 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VW RNDLR+ DN AL A DS V+ ++ P+ Q H PK A F+ +
Sbjct: 5 LVWLRNDLRINDNMALAAACRDSQATVIALFIATPQQWQQ--HHMAPKQAA----FIQQN 58
Query: 143 LADLRKNLMNRGLNLLIRHGKP-EEIIPSLAKSFGAHAVYA-----QKETCSEELNVERL 196
L L+ +L RG+ L I LA+ V A Q E E +
Sbjct: 59 LLLLQTSLAERGIPLHFHQCDDFAASIDYLAEFCQQQQVDALFYNYQYEINERERDARAE 118
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFD-------HSSLPDVYTHFR 249
R + Q V+ Q D S P + G+ PF H LP+ Y +
Sbjct: 119 KRLDAQGVI--CQGFDDSLLLPPGSVQTGSNTMFKVFTPFSRAFVRRLHQGLPECYHAPK 176
Query: 250 KSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGR 309
A +++ +IP+ F P D F GE AAL +
Sbjct: 177 ARDGAPISIKK--KIPA-FDYPCEAFD-------------------DSLFPAGEEAALKQ 214
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ + K ++ Y + R+ + D +++ S +LA G +SPR V + +
Sbjct: 215 LRHF--AKQAVQHYPDQRD-LPAIDGTSRLSAYLAIGVLSPRQCLHRVLKEHPDALNEGK 271
Query: 370 TYWVLFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
+ L EL+WR+++R + + + H + R ++ W Q++ ++W+ G TGYP+
Sbjct: 272 AFTWLNELIWREFYRHLMVAFPALCKHQPFVDWTRNVD--WQQNEAHLKAWQQGKTGYPI 329
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ G+M NR R I SFLV+D+ IDWR G +F L+D D +N G W +
Sbjct: 330 VDAAMRQLNTLGWMHNRLRMITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWA 389
Query: 487 AGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
A G D R F+ Q + +D++GE++ WLP+LK +P
Sbjct: 390 ASTGTDAAPYFRIFNPTTQGERFDKQGEFIRQWLPELKEVP 430
>gi|383936686|ref|ZP_09990108.1| deoxyribodipyrimidine photo-lyase [Rheinheimera nanhaiensis E407-8]
gi|383702233|dbj|GAB60199.1| deoxyribodipyrimidine photo-lyase [Rheinheimera nanhaiensis E407-8]
Length = 472
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 138/482 (28%), Positives = 221/482 (45%), Gaps = 68/482 (14%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTT--YHFGFPKTGA----- 133
+ +VWFRNDLR LDN L A D + RH+ P+T A
Sbjct: 3 ALTVVWFRNDLRTLDNAVLCSAIDHAA----------RHNTALVGLFIATPQTWAQHDMA 52
Query: 134 -LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA------VYAQKET 186
++ F+ + LR L + LL G + +P+L FG + V+AQ E
Sbjct: 53 PIKQDFIRRRVQALRTELTALNIPLLAVEGSSYQQVPAL---FGQLSQVFQVTVFAQTEY 109
Query: 187 CSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT 246
E + V + L S N L + I + V+T
Sbjct: 110 ELREQQRDAKVAQRL------------SANKGVLVQFDTQCIMPPGSIRTQQGDIYKVFT 157
Query: 247 HFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHS---PKVSKGMRFVGGE 303
F++S A+ +G FG P V PL QL HS P + E
Sbjct: 158 PFKRSWLARLHQQGV----QCFGRPKRV---NQPPL--QLPEHSVMQPGDDSSANWPVTE 208
Query: 304 SAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISP-----RYIYEEVK 358
L R+ + ++ + Y++ R+ D ++K SP+LA G+IS R E +
Sbjct: 209 ELMLTRLRTFCQQR--VADYQQQRD-FPAVDGTSKLSPYLAIGAISAMQCVARLQLEAKE 265
Query: 359 SYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLE---YKWSQDQKLFE 415
S+ RE+ + + W L EL+WR++++ I + Y + H P + + +W+ D+ LF+
Sbjct: 266 SWAREK--SGAEVW-LSELIWREFYKHILVAYPQLIKH--QPFQADTAAIRWTNDKTLFQ 320
Query: 416 SWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYD 475
+W DG TGYP++DA M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D
Sbjct: 321 AWCDGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLHIDWRWGERYFMSKLIDGD 380
Query: 476 PCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPG 534
+N G W + A G D R F+ Q++ +D +G+++ ++P+L L ++P
Sbjct: 381 FAANNGGWQWAASTGTDAAPYFRIFNPVSQSEKFDPQGDFIRLYVPELSKLQGAALHWPA 440
Query: 535 GS 536
+
Sbjct: 441 KA 442
>gi|293409079|ref|ZP_06652655.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469547|gb|EFF12031.1| conserved hypothetical protein [Escherichia coli B354]
Length = 472
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 223/461 (48%), Gaps = 52/461 (11%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWD-SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
+ +VWFR DLR+ DN AL A SS VL +Y PR Q H P+ +A+F+
Sbjct: 3 IHLVWFRQDLRLHDNFALAAACRYSSARVLALYIATPR--QWAAHNMSPR----QAEFIN 56
Query: 141 ECLADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELN 192
L L+ L +G+ LL EI+ + A++ H Y + +E ++
Sbjct: 57 AQLNGLQIALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQYEVNERARDVQ 116
Query: 193 VERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI 252
VER +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 117 VERTLRN------VVCEGFDDSVILPPGTVMTGNHEMYKVFTPFKNAWL----KRLREGM 166
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVN 311
+C +R S P PS+ L+ P+ F E AA+ ++
Sbjct: 167 -PECVAAPKVRSSGSIDPAPSIT------------LNYPRQPFDTAHFPVEEKAAIAQLR 213
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
++ ++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 214 QFC--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGS 270
Query: 372 WVLFELMWRDYFRFISLKYGNSL-----FHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
L EL+WR+++R + + Y SL F + R +W ++ F++W++G TGYP+
Sbjct: 271 VWLNELIWREFYRHL-ITYHPSLCKHRPFIVWTDR---VQWQRNPTHFKAWQEGKTGYPI 326
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W +
Sbjct: 327 VDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWA 386
Query: 487 AGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
A G D R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 387 ASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRNVP 427
>gi|157154932|ref|YP_001461868.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
gi|218553235|ref|YP_002386148.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI1]
gi|218694131|ref|YP_002401798.1| deoxyribodipyrimidine photolyase [Escherichia coli 55989]
gi|300926110|ref|ZP_07141923.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
gi|301327896|ref|ZP_07221069.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
gi|332282445|ref|ZP_08394858.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
gi|407468122|ref|YP_006785436.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407483147|ref|YP_006780296.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483700|ref|YP_006771246.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415827891|ref|ZP_11514660.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1357]
gi|417135783|ref|ZP_11980568.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0588]
gi|417144606|ref|ZP_11986412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1.2264]
gi|417804024|ref|ZP_12451058.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
LB226692]
gi|417831779|ref|ZP_12478300.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
01-09591]
gi|417863934|ref|ZP_12508981.1| hypothetical protein C22711_0867 [Escherichia coli O104:H4 str.
C227-11]
gi|419276924|ref|ZP_13819185.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10E]
gi|419374372|ref|ZP_13915423.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14B]
gi|419379648|ref|ZP_13920624.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14C]
gi|419384859|ref|ZP_13925758.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14D]
gi|422959160|ref|ZP_16971091.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H494]
gi|422991385|ref|ZP_16982156.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C227-11]
gi|422993327|ref|ZP_16984091.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C236-11]
gi|422998537|ref|ZP_16989293.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
09-7901]
gi|423006999|ref|ZP_16997742.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
04-8351]
gi|423008645|ref|ZP_16999383.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-3677]
gi|423022833|ref|ZP_17013536.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4404]
gi|423027985|ref|ZP_17018678.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4522]
gi|423033819|ref|ZP_17024503.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4623]
gi|423036686|ref|ZP_17027360.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041804|ref|ZP_17032471.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048493|ref|ZP_17039150.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052076|ref|ZP_17040884.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059042|ref|ZP_17047838.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C5]
gi|429722875|ref|ZP_19257766.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429775046|ref|ZP_19307047.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02030]
gi|429780233|ref|ZP_19312185.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02033-1]
gi|429784283|ref|ZP_19316196.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02092]
gi|429789621|ref|ZP_19321496.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02093]
gi|429795851|ref|ZP_19327677.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02281]
gi|429801779|ref|ZP_19333556.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02318]
gi|429805411|ref|ZP_19337157.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02913]
gi|429810220|ref|ZP_19341922.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03439]
gi|429815980|ref|ZP_19347639.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-04080]
gi|429821568|ref|ZP_19353181.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03943]
gi|429907241|ref|ZP_19373209.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429911437|ref|ZP_19377393.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429917275|ref|ZP_19383215.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922313|ref|ZP_19388234.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429923166|ref|ZP_19389082.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932061|ref|ZP_19397955.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429933662|ref|ZP_19399552.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939321|ref|ZP_19405195.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429946963|ref|ZP_19412818.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949595|ref|ZP_19415443.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429957875|ref|ZP_19423704.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432764032|ref|ZP_19998481.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE48]
gi|432880293|ref|ZP_20096984.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE154]
gi|450212067|ref|ZP_21894440.1| deoxyribodipyrimidine photolyase [Escherichia coli O08]
gi|157076962|gb|ABV16670.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
gi|218350863|emb|CAU96561.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
55989]
gi|218360003|emb|CAQ97550.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
IAI1]
gi|300417809|gb|EFK01120.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
gi|300845580|gb|EFK73340.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
gi|323185134|gb|EFZ70500.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1357]
gi|332104797|gb|EGJ08143.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
gi|340735435|gb|EGR64492.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
01-09591]
gi|340741430|gb|EGR75577.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
LB226692]
gi|341917223|gb|EGT66839.1| hypothetical protein C22711_0867 [Escherichia coli O104:H4 str.
C227-11]
gi|354856387|gb|EHF16845.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
04-8351]
gi|354857634|gb|EHF18087.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C227-11]
gi|354864402|gb|EHF24831.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C236-11]
gi|354874714|gb|EHF35080.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
09-7901]
gi|354878675|gb|EHF39022.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4404]
gi|354882467|gb|EHF42789.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-3677]
gi|354885191|gb|EHF45497.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4522]
gi|354887800|gb|EHF48067.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4623]
gi|354900902|gb|EHF61033.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354904083|gb|EHF64178.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354906540|gb|EHF66615.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354917501|gb|EHF77465.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354921619|gb|EHF81541.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C4]
gi|371595434|gb|EHN84284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H494]
gi|378132093|gb|EHW93445.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10E]
gi|378224435|gb|EHX84637.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14B]
gi|378233031|gb|EHX93123.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14C]
gi|378236451|gb|EHX96497.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14D]
gi|386153637|gb|EIH04926.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0588]
gi|386164489|gb|EIH26275.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1.2264]
gi|406778862|gb|AFS58286.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055444|gb|AFS75495.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064157|gb|AFS85204.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|429350547|gb|EKY87276.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02030]
gi|429351917|gb|EKY88636.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02033-1]
gi|429353245|gb|EKY89954.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02092]
gi|429367158|gb|EKZ03759.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02093]
gi|429368069|gb|EKZ04661.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02281]
gi|429369806|gb|EKZ06380.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02318]
gi|429381851|gb|EKZ18326.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02913]
gi|429385184|gb|EKZ21638.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03943]
gi|429385707|gb|EKZ22160.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03439]
gi|429397400|gb|EKZ33747.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-04080]
gi|429398353|gb|EKZ34695.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429398402|gb|EKZ34741.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429409129|gb|EKZ45359.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429417589|gb|EKZ53736.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429421257|gb|EKZ57378.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429422998|gb|EKZ59106.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429426999|gb|EKZ63084.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429434487|gb|EKZ70513.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429439472|gb|EKZ75455.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429443740|gb|EKZ79688.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429450520|gb|EKZ86415.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429456737|gb|EKZ92582.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9941]
gi|431312921|gb|ELG00905.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE48]
gi|431413248|gb|ELG96040.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE154]
gi|449322152|gb|EMD12152.1| deoxyribodipyrimidine photolyase [Escherichia coli O08]
Length = 472
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 219/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W+ G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|331682139|ref|ZP_08382761.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H299]
gi|331080563|gb|EGI51739.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H299]
Length = 472
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 130/455 (28%), Positives = 218/455 (47%), Gaps = 44/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSASVLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R EI+ + A++ H Y + +E ++ VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R V+ +D P + MY + PF ++ L R+ +
Sbjct: 119 RTLRN-----VVCEGFDDSVILPPGAVMTDNHEMYKVF-TPFQNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMK 432
L EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M+
Sbjct: 273 LSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVP 427
>gi|290962800|ref|YP_003493982.1| deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22]
gi|260652326|emb|CBG75459.1| putative deoxyribodipyrimidine photolyase [Streptomyces scabiei
87.22]
Length = 453
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 192/446 (43%), Gaps = 38/446 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V++V F DLR+ D+ L A D S V+P++ D T F P R FL +
Sbjct: 3 VSVVLFTCDLRLHDHPPLRAALDGSRQVVPLFVRD--RDVTGAGFAAPN----RLAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVY--AQKETCSEELNVERLVRK 199
CL DL L RG L++R G E + +A A V+ A ++
Sbjct: 57 CLRDLDTGLRERGGRLVVRSGDVVEEVCKVAAEADADEVHLAADVSAYAQRREERLRRAL 116
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+ V L + S P L T + + F H S R+ +
Sbjct: 117 EAEGVRLHVHATVTSAVDPGAVLPASTDHFAVFTPYFGHWS--------RQRLREASAAP 168
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
+ +P G +P L SP ++ G GE GR W +
Sbjct: 169 RAVHVPDGVGSE-------ELPSRAGLSGVSPGLASG-----GEIE--GRSRFSAWLRSG 214
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
++ Y++ +++ G D +++ SP L G++SP + + R + +L W
Sbjct: 215 IEAYEDRHDDLAG-DATSRLSPHLHFGTLSPVELVHRSR-----RAGGPGAEAFVRQLAW 268
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RD+ R + + R +W E+WR G TGYP++DA M++L G+
Sbjct: 269 RDFNRQVLAARPAAAKA--DYRAKHDRWRTVPDEAEAWRAGRTGYPVVDAAMRQLRHEGW 326
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
M NRGR + SFL + + IDWR+GA F L+D D +N NW + AG G D R +R
Sbjct: 327 MHNRGRLLTASFLAKTLYIDWRVGARHFLDLLVDGDVANNQLNWQWMAGTGTDTRPNRIL 386
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+ QA+ YD +GEYV W+P+L L
Sbjct: 387 NPVTQAKRYDPDGEYVRRWVPELADL 412
>gi|366158602|ref|ZP_09458464.1| deoxyribodipyrimidine photolyase [Escherichia sp. TW09308]
Length = 472
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 130/455 (28%), Positives = 214/455 (47%), Gaps = 44/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A + S VL +Y PR Q H P+ +A+F+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNPSARVLALYIATPR--QWATHNMSPR----QAEFINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L+ L +G+ LL E++ + + ++ + E + LV
Sbjct: 59 LNTLQIMLAEKGIPLLFHEVDDFAASVEMVKQVCEENRVTHLFYNYQYEVNERARDALVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
K L VV + D S P ++ G + PF ++ L R+ I +C
Sbjct: 119 KTLHNVV--CEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGI-PECVA 171
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFWKK 317
+R S PP S+ L+ P+ S F E A+ ++ ++ +
Sbjct: 172 APKVRSSGSIAPPSSIT------------LNYPRQSFDTAHFPVEEKTAIAQLRQFC--Q 217
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
Y++ RN + +++ S LA+G +SPR + + + + + + L EL
Sbjct: 218 SGAGEYEQQRN-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALEGGAGSVWLNEL 276
Query: 378 MWRDYFRFISLKYGNSL-----FHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
+WR+++R + + Y SL F R +W + ++W++G TGYP++DA M+
Sbjct: 277 IWREFYRHL-MTYHPSLCKHRPFIAWTDR---VQWQSNPAHLKAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNGTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVP 427
>gi|110804662|ref|YP_688182.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
gi|417700631|ref|ZP_12349771.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218]
gi|417737461|ref|ZP_12386067.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70]
gi|417826662|ref|ZP_12473238.1| deoxyribodipyrimidine photolyase [Shigella flexneri J1713]
gi|420318976|ref|ZP_14820832.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2850-71]
gi|420370575|ref|ZP_14871118.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 1235-66]
gi|424837129|ref|ZP_18261766.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5a str. M90T]
gi|110614210|gb|ABF02877.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
gi|332760931|gb|EGJ91219.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70]
gi|333008008|gb|EGK27484.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218]
gi|335576862|gb|EGM63100.1| deoxyribodipyrimidine photolyase [Shigella flexneri J1713]
gi|383466181|gb|EID61202.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5a str. M90T]
gi|391254269|gb|EIQ13431.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2850-71]
gi|391320117|gb|EIQ77022.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 1235-66]
Length = 472
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 222/464 (47%), Gaps = 48/464 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR DLR+ DN AL A +SS VL +Y PR +T H P+ +A+ +
Sbjct: 5 LAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWET--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R E + A++ H Y + +E +++VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RALRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--ENGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L EL+WR+++R + Y + H + +++ W + ++W+ G TGYP+IDA
Sbjct: 273 LSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIIDAA 330
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 331 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTG 390
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 391 TDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
Length = 493
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/460 (26%), Positives = 204/460 (44%), Gaps = 32/460 (6%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR DLR +D+ AL A S V V+ D P+ R +F+ L
Sbjct: 8 LVWFRRDLRSVDHAALHHALAQSRQVYCVFIFD-----RAILDALPRADR-RVEFIHASL 61
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L + L G L+++H E IP LA G AV+A + + + + V LQ
Sbjct: 62 LELAQALRALGGGLIVQHAWAETAIPELAIELGVDAVFANHDYEPQAITRDAHVAAALQA 121
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI----EAKCTVR 259
S + + +++ P+ ++ L +Y ++ E
Sbjct: 122 AGRSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAESNEATLRPYEIDAYAD 181
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
+ +P S P PS+ D G E+ L + GM+ A D
Sbjct: 182 RFVNLPESKFPIPSLTDLG----FEKTNLPDLNIPTGMQGAQDLLDAFA---------DR 228
Query: 320 LKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
++ Y +TR+ + GP Y S + G++S R + R + L EL
Sbjct: 229 MQRYDQTRDFPALKGPSY---LSVHVRFGTVSIRALARRALDAMRTGTGGNGAAVWLSEL 285
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKW---SQDQKLFESWRDGCTGYPLIDANMKEL 434
+WRD++ I ++ + + H W ++LF++W DG TGYPL+DA M +L
Sbjct: 286 VWRDFYFMILFQHPHVVDHAFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAMAQL 345
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R + SFL++D+GIDWR G +F L D+D +N G W + + G D +
Sbjct: 346 NQTGYMHNRLRMVTASFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGCDAQ 405
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q++ +D++G+++ +LPQL L + P
Sbjct: 406 PYFRIFNPITQSEKFDQQGKFIRRYLPQLAKLSDRHIHAP 445
>gi|317123324|ref|YP_004097436.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
DSM 43043]
gi|315587412|gb|ADU46709.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
DSM 43043]
Length = 455
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 210/461 (45%), Gaps = 67/461 (14%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V+++WFR DLRV D+ ALL A DS VLPV+ +DPR +TG R++ LI
Sbjct: 3 VSVLWFRRDLRVSDHPALLAALDSGTSVLPVFVLDPR---------LLETGQPRSRRLIT 53
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETC----SEELNVERLV 197
L L +L +L++R G P ++IP +A+ GA +V+ +ET + + VE +
Sbjct: 54 SLRALADSLDG---HLVVRTGNPVDVIPQVAREVGAESVHVTRETTPFGRTRDAAVEVAL 110
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT 257
+ +++V + P L + Y V+T F ++ A +
Sbjct: 111 QSEGRRLVATGTPYAAG---PGLVVTQSGAPYR-------------VFTPFARAWRAHGS 154
Query: 258 VRGCIRIPSSFGPPPSVV----DWGSVPL---IEQLELHSPKVSKGMRFVGGESAALGRV 310
P PP + D G + L R + A GR+
Sbjct: 155 -------PPPAAPPLRIPWFDGDVGGLALPAVAAAGGPGGIAGEAAARTRWLDFLAEGRL 207
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
Y +D R ++ D +++ S L G I PR + ++ S+ R +T
Sbjct: 208 GRYAEDRD--------RPDL---DATSRMSVPLKYGEIHPRTLLADIASHPDGRTGGAAT 256
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPR--KLEYK-WSQDQKLFESWRDGCTGYPLI 427
+ + EL WR+++ + S + P ++ Y + +L +WR+G TGYP++
Sbjct: 257 F--VTELAWREFYADVLWHRPESAWEDLRPDLGRMSYDDGPETDRLVAAWREGRTGYPIV 314
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L G+M NR R I SFL +D+ + W +GA +F LLD D SN W + A
Sbjct: 315 DAGMRQLLGEGWMHNRLRMITASFLTKDLHVWWPVGARYFLDQLLDGDIASNSHGWQWVA 374
Query: 488 GVGNDPREDRYFSI---PKQAQNYDREGEYVAYWLPQLKAL 525
G G D YF + +QA +D EG+YV W+P+L L
Sbjct: 375 GTGTDAAP--YFRVLNPLRQAHRFDPEGDYVRRWVPELGHL 413
>gi|386818429|ref|ZP_10105647.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
gi|386423005|gb|EIJ36840.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
Length = 476
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 204/461 (44%), Gaps = 37/461 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
AIVW R DLR+ DN AL A + V+ ++ DP + + GA +L
Sbjct: 3 TAIVWLRQDLRLADNPALYHACKTCANVILIFIDDPLPGSVS------RLGAASQVWLHH 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L L +L G L +R G ++ +L GA VY + L ++ +++ L
Sbjct: 57 SLQALDASLQAAGNRLTLRQGSALPVLQALLAETGATHVYWNRVYDPASLARDKQIKEIL 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+Q N N P W + D P+ V+T F K++
Sbjct: 117 KQSCTVHSFNASLLNEP-----W--EVLKADGTPYK------VFTPFWKAMLKHGIQHLP 163
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGM--RFVGGESAALGRVNEYFWKKDL 319
+ P P S S+ L E L GM + GE+AA+ ++ D
Sbjct: 164 LPAPEQIPAPTSFPR--SLALNELGLLPRTHWDTGMMAHWPAGETAAMQKL------LDF 215
Query: 320 LKV----YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY-WVL 374
L + YK RN + + SP L G ISPR +++ E A +S +
Sbjct: 216 LPLGGADYKNARN-FPAQHGTAQLSPHLHFGEISPRQAVYHTEAFLAEHPAAESGLRHFI 274
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQ-KLFESWRDGCTGYPLIDANMKE 433
E+ WR++ ++ + +++ R + W++D + E WR G TGYP+IDA M+E
Sbjct: 275 QEIGWREFAWYLLYHFPHTVDQALDERFKHFPWAEDYVENLEHWRRGQTGYPIIDAGMRE 334
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L TG+M NR R I S L +++ I W+ G WF L+D D SN W + AG G D
Sbjct: 335 LWQTGWMHNRVRMIVASLLTKNLLIPWQEGENWFRDTLVDADLASNVLGWQWTAGCGADA 394
Query: 494 RED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q+Q +D EGEY+ W+P+L+A ++ + P
Sbjct: 395 APYFRIFNPILQSQKFDPEGEYIRRWVPELRARDNKQIHLP 435
>gi|423581405|ref|ZP_17557516.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
gi|401216170|gb|EJR22885.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
Length = 476
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 136/473 (28%), Positives = 218/473 (46%), Gaps = 37/473 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV F+ D R+ DN AL +A S E VLP+Y D S G+ +L +
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE-VLPIYIQDETFS----------IGSAAKWWLHHAI 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ- 202
D++K L G L+IR G +E I SL K AVY + L + ++ L+
Sbjct: 55 IDIKKQLEALGSTLIIRKGNIQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILED 114
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR-GC 261
+ ++ + N P + T Y + PF Y F+K + K T +
Sbjct: 115 KGIICKEFNSHLLLEPWIIKKKDNTEYKVFT-PF--------YNAFQKQVIPKPTSKVQS 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
I+ SS SV + +P I H + + E A ++F K L
Sbjct: 166 IKWGSSLPASLSVSELHLLPTIPWTS-HMEAI-----WDPTEEGAYKVFKKFFSSK--LA 217
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERE-RVANDSTYWVLFELM 378
Y E R+ + + +P+L+ G IS + +Y + KS ER+ + + +L+
Sbjct: 218 FYSEGRD-FPNQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVISFIRQLI 276
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++ ++ Y +++ + W+++++L W+ G TGYP IDA M+EL TG
Sbjct: 277 WREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTG 336
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
FM NR R SFLV+ + I W+ GA+WF LLD D +N W + AG G D R
Sbjct: 337 FMHNRARMAVASFLVKHLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFR 396
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--GGSYIEQIVSLKHGN 548
F+ Q + +D+ GEY+ W+P+L+ +P + + P +I Q ++K G+
Sbjct: 397 IFNPITQGEKFDKNGEYIRKWVPELRDMPSKYIHKPWEAPEHILQKANIKLGH 449
>gi|422763846|ref|ZP_16817599.1| DNA photolyase [Escherichia coli E1167]
gi|324116248|gb|EGC10169.1| DNA photolyase [Escherichia coli E1167]
Length = 472
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 219/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W+ G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|241764783|ref|ZP_04762791.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
gi|241365713|gb|EER60409.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
Length = 488
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 127/453 (28%), Positives = 209/453 (46%), Gaps = 49/453 (10%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVD-------PRHSQTTYHFGFPKTGA 133
+VWFR DLR D+ AL A V V+ D PR + A
Sbjct: 6 ATGLVWFRRDLRACDHAALYHALTQCRKVHCVFVFDRAILDALPRADRRV---------A 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ L+E A LR + L++RH + +P LA++ A AVYA + + L+
Sbjct: 57 FIREALVELDAALRTLASHPAGGLIVRHALATDAVPELAQALQAQAVYANHDDEPQALSR 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR---- 249
+ LVR L Q ++ + T + D++ + V+T ++
Sbjct: 117 DSLVRTRLAQTGIAFHTFKDHT------------LLERDEVLTQAGTPYSVFTPYKNAWL 164
Query: 250 KSIEA-KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALG 308
++I+A + +R P P+ + VP + L + + + + G S A+
Sbjct: 165 RTIDAFQLQSYAVVRHAHRLAPRPAP-ECLPVPALGALGFEAAQ-NTPLGLPTGSSGAM- 221
Query: 309 RVNEYFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA 366
R+ E F ++ + Y +TR+ + GP Y S L G+ISPR + + +
Sbjct: 222 RLFEDFLQR--IHRYADTRDYPAIKGPSY---LSVHLRFGTISPRLLARSAHALAQGGNP 276
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKW---SQDQKLFESWRDGCTG 423
+T+ L EL+WRD++ I + + + P +W + Q LF +W +G TG
Sbjct: 277 GATTW--LNELIWRDFYCQILAHHPHVVERSFKPAYDAIQWETGDEAQALFSAWCEGRTG 334
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YPL+DA M +L+ TG+M NR R +A SFLV+ +GIDWR G +F T L D+D +N G W
Sbjct: 335 YPLVDAAMAQLNQTGYMHNRLRMVAASFLVKHLGIDWRWGEHYFATHLNDFDLAANNGGW 394
Query: 484 TYGAGVGNDPRED-RYFSIPKQAQNYDREGEYV 515
+ + G D + R F+ Q++ +D EG ++
Sbjct: 395 QWASSSGCDAQPYFRIFNPVSQSEKFDAEGRFI 427
>gi|345003555|ref|YP_004806409.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SirexAA-E]
gi|344319181|gb|AEN13869.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. SirexAA-E]
Length = 459
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 205/449 (45%), Gaps = 39/449 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
VA+V F +DLR+ D+ L A S++ V+P++ D GF R FL +
Sbjct: 3 VAVVLFTSDLRLHDHPPLHAALASADEVVPLFVRD----DAVARAGFCAPN--REAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL DL L +RG L+IR G+ + + + GA V+ + E +R+ L
Sbjct: 57 CLRDLDAGLRDRGGRLVIRSGEIVDEVRRVVTETGAGEVHLAADVSGHAQRREERLREAL 116
Query: 202 QQVVLSSQSNDK--STNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+ +D + P + G+ H V+T + +S
Sbjct: 117 ASAGCRLRVHDAVVTAVAPGAVVPSGSGKDHFA-----------VFTPYFRSWSQ----- 160
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
+ + + FG P V P E + S +VS R V GR W++
Sbjct: 161 --VGLRTPFGAP-RAVRMPDGPASEPVPERS-RVSGVSRGVAEGGEREGRRRMTAWRRQG 216
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L Y++ +++ G D +++ SP L G++SP + +S + +L W
Sbjct: 217 LGRYEDRHDDLAG-DATSRLSPHLHFGTLSPTELIHRARS-----AGGAGAEAFVRQLCW 270
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKL---FESWRDGCTGYPLIDANMKELSM 436
RD+ + L + H R + +W ++ E+W++G TGYPL+DA M++L
Sbjct: 271 RDFHHQV-LAARPAASH-ADYRTRDDRWRTERTAAGDIEAWKEGRTGYPLVDAAMRQLRH 328
Query: 437 TGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED 496
G+M NRGR + SFLV+ + +DWR+GA F L+D D +N NW + AG G D R +
Sbjct: 329 EGWMHNRGRLLTASFLVKTLYVDWRIGARHFLELLVDGDIANNQLNWQWMAGTGTDSRPN 388
Query: 497 RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R + QA+ YD +G YV W+P+L+ L
Sbjct: 389 RVLNPVVQAKRYDTDGAYVRRWVPELEKL 417
>gi|330752085|emb|CBL80595.1| deoxyribodipyrimidine photolyase [uncultured Leeuwenhoekiella sp.]
Length = 434
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/443 (27%), Positives = 206/443 (46%), Gaps = 42/443 (9%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
V+I WFR DLR+ DN L+A S VLP++ D PK A R F+
Sbjct: 3 SVSIFWFRRDLRLDDNVGFLEALKSDYPVLPIFIFDKEILD-----KLPKDDA-RVTFIY 56
Query: 141 ECLADLRKNLMN-RGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
E L +R L N +L + +GKP +I + K + VY + + E ++
Sbjct: 57 ETLQKMRDRLQNDHTSSLALFYGKPIDIWKQILKDYEVKEVYTNR-------DYEPYAKR 109
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+++ SS +K + K ++ DD+ VYT ++
Sbjct: 110 RDEEI--SSLFEEKDIDFKTFK---DQVIFEKDDVVKGDGEPYIVYTPYKNKWLETFNED 164
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
++I + ++V+ +P + E+ G ++++L +V +Y L
Sbjct: 165 NDLKIHYTSQHLNNLVENSRLPNLTLSEM------------GFKTSSL-KVPDYDVTPTL 211
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
+ Y++TRN D +++ P L G++S R K ++ N+ +W EL+W
Sbjct: 212 IDNYEDTRN-FPAQDGTSRLGPHLRFGTVSVR------KMVKKALAENNQVFWS--ELVW 262
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
R++F I Y ++ + + W +++ FE W+ G TG+ L+DA M+EL+ TG+
Sbjct: 263 REFFMQILYHYPETINNAFRKKYDRIDWRNNEEEFEKWKTGTTGFLLVDAGMRELNTTGY 322
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RY 498
M NR R + SFL + + IDWR G +F LLDY+ SN GNW + AG G D R
Sbjct: 323 MHNRVRMLTASFLCKHLLIDWRWGETYFAEKLLDYEQASNVGNWQWAAGSGVDAAPYFRI 382
Query: 499 FSIPKQAQNYDREGEYVAYWLPQ 521
F+ Q +D+E +Y+ ++P+
Sbjct: 383 FNPMTQVDKFDKERKYIEKFIPE 405
>gi|432371439|ref|ZP_19614495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE11]
gi|430899652|gb|ELC21746.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE11]
Length = 472
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 130/455 (28%), Positives = 214/455 (47%), Gaps = 44/455 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A + S VL +Y PR Q H P+ +A+F+
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNPSARVLALYIATPR--QWATHNMSPR----QAEFINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L+ L +G+ LL E++ + + ++ + E + LV
Sbjct: 59 LNTLQIMLAEKGIPLLFHEVDDFAASVEMVKQVCEENRVTHLFYNYQYEVNERARDALVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
K L VV + D S P ++ G + PF ++ L R+ I +C
Sbjct: 119 KTLHNVV--CEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGI-PECVA 171
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFWKK 317
+R S PP S+ L+ P+ S F E A+ ++ ++ +
Sbjct: 172 APKVRSSGSIAPPSSIT------------LNYPRQSFDTAHFPVEEKTAIAQLRQFC--Q 217
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
Y++ RN + +++ S LA+G +SPR + + + + + + L EL
Sbjct: 218 SGAGEYEQQRN-FPAVEGTSRLSASLATGVLSPRQCLHRLLAEQPQALEGGAGSVWLNEL 276
Query: 378 MWRDYFRFISLKYGNSL-----FHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
+WR+++R + + Y SL F R +W + ++W++G TGYP++DA M+
Sbjct: 277 IWREFYRHL-MTYHPSLCKHRPFIAWTDR---VQWQSNPAHLKAWQEGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNGTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 393 AAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVP 427
>gi|121703429|ref|XP_001269979.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
clavatus NRRL 1]
gi|119398122|gb|EAW08553.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
clavatus NRRL 1]
Length = 586
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 129/480 (26%), Positives = 221/480 (46%), Gaps = 55/480 (11%)
Query: 73 KALKRNGKGVAIVWFRNDLRVLDNEALLKAWDSSEM----VLPVYCVDPRHSQTTYHFGF 128
K +K N + WF++DLR+ DN AL A+ +++ ++ +Y + P+ T H
Sbjct: 87 KVIKPNN--AVVHWFKSDLRLHDNRALQMAYQTAKEHNIPLIGLYILSPQ--DLTAHLSS 142
Query: 129 PKTGALRAQFLIECLADLRKNLMNRGLNLLI-----RHGKPEEIIPSLAKSFGAHAVYAQ 183
P R + L L+++L + L + R P+ II L + +G + ++A
Sbjct: 143 PA----RVDLTLRTLDQLKRDLNELDIPLYMETQETRKDIPQRII-DLCQEWGVNNIFAN 197
Query: 184 KETCSEELNVE-RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP 242
E +EL E +LVR Q + ++D P Y + P+ + L
Sbjct: 198 LEYEVDELRREAKLVRMCAQNGIKFETAHDACVVTPGAVASQQGKQYAVYS-PWYRAWL- 255
Query: 243 DVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSK------- 295
H R++ + C+ + G P L E +P+ +
Sbjct: 256 ---VHLRENPD-------CLELSEEPGSNPGNARKHFAKLFESEVPAAPENKRLSDEQRK 305
Query: 296 --GMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYI 353
G + GE AL R+ ++ ++ +K Y + RN M G S SP+ ASGS+S R
Sbjct: 306 YFGQLYPAGEHEALDRLEKFV--EERVKDYADARNMMFGQTTSI-LSPYFASGSLSARTA 362
Query: 354 YEEVKSYER---ERVANDSTYWVLFELMWRDYFRFISLKYG----NSLFHLGGPRKLEYK 406
+ + +R W+ E+ WRD+++ + + + N F P +
Sbjct: 363 VVHARKANKGSLDRGDPGLASWIS-EVAWRDFYKHVLVHWPFICMNKCFK---PEFTNLE 418
Query: 407 WSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEW 466
W D+ F +W +G TG+P++DA M+++ +M NR R I SFL +D+ IDWR G +
Sbjct: 419 WEYDENKFAAWCEGKTGFPIVDAAMRQMKHDAWMHNRARMIVASFLSKDLLIDWRRGERY 478
Query: 467 FETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
F L+D D SN+G W +G+ G DP+ R F+ +Q++ +D +GEY+ WLP+L+ +
Sbjct: 479 FMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLRQSERFDPDGEYIRKWLPELRGI 538
>gi|193065554|ref|ZP_03046622.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
gi|194429065|ref|ZP_03061596.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
gi|260842916|ref|YP_003220694.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O103:H2 str. 12009]
gi|415804922|ref|ZP_11501153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010]
gi|416346215|ref|ZP_11679486.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B]
gi|417161485|ref|ZP_11997721.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0741]
gi|417173694|ref|ZP_12003490.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2608]
gi|417179431|ref|ZP_12007421.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0624]
gi|417242575|ref|ZP_12037792.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 9.0111]
gi|417622024|ref|ZP_12272350.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_H.1.8]
gi|419298986|ref|ZP_13841000.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11C]
gi|419315583|ref|ZP_13857408.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12A]
gi|419321430|ref|ZP_13863166.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12B]
gi|419327648|ref|ZP_13869277.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12C]
gi|419333082|ref|ZP_13874641.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12D]
gi|419338484|ref|ZP_13879970.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12E]
gi|419344334|ref|ZP_13885716.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13A]
gi|419348772|ref|ZP_13890125.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13B]
gi|419353685|ref|ZP_13894968.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13C]
gi|419359015|ref|ZP_13900245.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13D]
gi|419364042|ref|ZP_13905223.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13E]
gi|419871209|ref|ZP_14393269.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H2 str.
CVM9450]
gi|420390115|ref|ZP_14889383.1| deoxyribodipyrimidine photolyase [Escherichia coli EPEC C342-62]
gi|432812811|ref|ZP_20046657.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE101]
gi|192926843|gb|EDV81469.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
gi|194412896|gb|EDX29187.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
gi|257758063|dbj|BAI29560.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O103:H2 str. 12009]
gi|320198176|gb|EFW72780.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B]
gi|323158756|gb|EFZ44769.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010]
gi|345385472|gb|EGX15316.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_H.1.8]
gi|378155774|gb|EHX16830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11C]
gi|378173681|gb|EHX34515.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12B]
gi|378174037|gb|EHX34865.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12A]
gi|378175651|gb|EHX36466.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12C]
gi|378188762|gb|EHX49356.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13A]
gi|378190279|gb|EHX50864.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12D]
gi|378193388|gb|EHX53927.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12E]
gi|378204434|gb|EHX64850.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13B]
gi|378207663|gb|EHX68052.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13D]
gi|378207976|gb|EHX68361.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13C]
gi|378218790|gb|EHX79060.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13E]
gi|386174021|gb|EIH46022.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0741]
gi|386176386|gb|EIH53865.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2608]
gi|386186093|gb|EIH68810.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0624]
gi|386211563|gb|EII22019.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 9.0111]
gi|388337681|gb|EIL04178.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H2 str.
CVM9450]
gi|391314439|gb|EIQ71989.1| deoxyribodipyrimidine photolyase [Escherichia coli EPEC C342-62]
gi|431356931|gb|ELG43617.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE101]
Length = 472
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 219/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W+ G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|340356010|ref|ZP_08678676.1| deoxyribodipyrimidine photolyase [Sporosarcina newyorkensis 2681]
gi|339621805|gb|EGQ26346.1| deoxyribodipyrimidine photolyase [Sporosarcina newyorkensis 2681]
Length = 470
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 131/464 (28%), Positives = 213/464 (45%), Gaps = 62/464 (13%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G IVWFR DLR+ D+ AL++A E+V PV+ + P Q + +L
Sbjct: 2 GKTIVWFRKDLRLHDHPALVEAAAHGEVV-PVFIL-PESRQEASDW-----------WLH 48
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVY-----------AQKETCSE 189
L +L+K R + L++R G P + ++ + GA + +++ S
Sbjct: 49 HSLLELQKKFAERQIQLIVRKGSPVGQLLAVQQDSGAEGIVFNELYDPASRRQEQDVLSA 108
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
L++E VR + +++ T P V+T F
Sbjct: 109 FLDLEVQVRSHQGTLLVPPTLILNKTCEPY-----------------------KVFTPFW 145
Query: 250 KSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVG----GESA 305
K + + V + +P+ PS S+P + L P S +F+ GE+A
Sbjct: 146 KRLRQE-RVEQSLPVPNML---PSSTLLTSLPDSKWDLLPGP--SWHGKFIHYWRPGEAA 199
Query: 306 ALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERV 365
A+ + L YKE R+ P S + SP+LA+G+IS R ++ ++ E +
Sbjct: 200 AIECWKTF--SGQGLSSYKEGRDIPAKPHVS-RLSPYLAAGNISVRSLWH-AALHQTEFI 255
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYP 425
+D T L +L WRD+ + L + L P + W + + +W+ G TGYP
Sbjct: 256 GDDQTEAFLRQLAWRDFAHYQLLYFPKMLDRPIRPEFDRFPWQEAGEHLAAWKTGRTGYP 315
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
L+DA M+EL TG++ NR R +A SFLV+ + +DWR G WFE L+D+D +N W +
Sbjct: 316 LVDAGMRELWETGYIHNRVRMVAASFLVKHLLVDWREGQAWFEQTLVDWDAANNAMGWQW 375
Query: 486 GAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
AG G D R F+ Q + +D YV WLP+L+++P++
Sbjct: 376 VAGSGCDASPYFRIFNPTVQGEKFDGAAGYVKKWLPELESMPEK 419
>gi|300816355|ref|ZP_07096577.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
gi|415878911|ref|ZP_11544480.1| deoxyribodipyrimidine photolyase [Escherichia coli MS 79-10]
gi|432804787|ref|ZP_20038729.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE91]
gi|432933174|ref|ZP_20132895.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE184]
gi|433192652|ref|ZP_20376667.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE90]
gi|300531045|gb|EFK52107.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
gi|342927077|gb|EGU95799.1| deoxyribodipyrimidine photolyase [Escherichia coli MS 79-10]
gi|431356972|gb|ELG43656.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE91]
gi|431455962|gb|ELH36312.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE184]
gi|431720608|gb|ELJ84634.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE90]
Length = 472
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 221/462 (47%), Gaps = 44/462 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + Y + H + +++ W + ++W+ G TGYP++DA M+
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 393 AAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|289774148|ref|ZP_06533526.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
gi|289704347|gb|EFD71776.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
Length = 457
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/453 (26%), Positives = 208/453 (45%), Gaps = 49/453 (10%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
VA+V F +DLR+ D+ L A +++ V+P++ D + GF R FL +
Sbjct: 3 VAVVLFTSDLRLHDHPPLHAALQAADEVVPLFVRD----TGIHAAGFDAPN--RRAFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL+DL +L +RG L++R G + S+A G+ V+ E +R+ L
Sbjct: 57 CLSDLDSSLRHRGGRLVVRDGPVVREVRSVAAQCGSTEVHVAAGVTGYAHRREERLREGL 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF-----RKSIEAKC 256
+ +D + H +I + DH + V+T + R+S
Sbjct: 117 R--------DDGVSLHVHEPVITAVAPGAVTPAGSDHVA---VFTPYFRRWSRESPRKPL 165
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWK 316
+R+P P +P + SP + GGE+A GR W
Sbjct: 166 AAPRTVRVPRGVRGEP-------LPDRADVAGASPGLP-----AGGETA--GRDRFARWS 211
Query: 317 KDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFE 376
+ L Y E R++ L D +++ SP+L G++SP + +++ + +
Sbjct: 212 RSGLSRY-EDRHDDLADDATSRLSPYLHFGALSPLELVHRARAH-----GGPGAEAFVRQ 265
Query: 377 LMWRDY-FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFE---SWRDGCTGYPLIDANMK 432
+ WRD+ + ++ + S+ R +W ++ E +WRDG TGYP++DA M+
Sbjct: 266 VCWRDFHHQVLAARPEASVKDY---RTRHDRWRGEEDAAEDIAAWRDGRTGYPVVDAAMR 322
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L G+M NR R + FL + + +DWR+GA F L+D D +N NW + AG G D
Sbjct: 323 QLRHQGWMHNRARLLVAGFLTKTLYVDWRIGARHFLDLLVDGDVVNNQLNWQWAAGTGTD 382
Query: 493 PREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R R + QA+ +D +G YV W+P+L+++
Sbjct: 383 TRPHRVLNPLVQARRFDPDGVYVRRWVPELRSV 415
>gi|417152493|ref|ZP_11991284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0497]
gi|417579974|ref|ZP_12230792.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_B2F1]
gi|345343163|gb|EGW75553.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_B2F1]
gi|386169217|gb|EIH35725.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0497]
Length = 472
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 221/462 (47%), Gaps = 44/462 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGDYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + Y + H + +++ W + ++W+ G TGYP++DA M+
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 393 AASYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|417252936|ref|ZP_12044695.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0967]
gi|386216867|gb|EII33356.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0967]
Length = 472
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 220/462 (47%), Gaps = 44/462 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKL---EYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + Y + H P + +W + ++W+ G TGYP++DA M+
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHC--PFIVWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 393 AAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|417711314|ref|ZP_12360320.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272]
gi|417715768|ref|ZP_12364702.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227]
gi|333010183|gb|EGK29618.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272]
gi|333021140|gb|EGK40397.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227]
Length = 472
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 130/466 (27%), Positives = 220/466 (47%), Gaps = 52/466 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR DLR+ DN AL A +SS VL +Y PR +T H P+ +A+ +
Sbjct: 5 LAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWET--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R E + A++ H Y + +E +++VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RALRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--ENGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFHLGGPRKL-----EYKWSQDQKLFESWRDGCTGYPLID 428
L EL+WR+++R + Y + H R +W + ++W+ G TGYP+ID
Sbjct: 273 LSELIWREFYRHLMTYYPSLCKH----RPFIVWTDRVQWQSNPAHLQAWQKGKTGYPIID 328
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A
Sbjct: 329 AAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS 388
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G D R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 389 TGTDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRNVPGKAVHEP 434
>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 477
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 134/464 (28%), Positives = 213/464 (45%), Gaps = 57/464 (12%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ I WFR DLR+ DN +L+ A + + VLP++ +D ++ G KTGA +L
Sbjct: 5 IIIHWFRQDLRLADNPSLVAAAQAGD-VLPLFILDDDNA------GDHKTGAAGRSWLHH 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRK 199
L L +L + L + G P +IIP L GA V+ + C E + R +++
Sbjct: 58 ALNALNMSLDGK---LCVMRGDPVDIIPKLVAKVGASGVFWNR--CYEPWRIARDKMLKT 112
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
NL + +S + S L+W T+ D P+ V+T F +
Sbjct: 113 NLTNNNIQVESFNGS-------LLWEPWTVLKGDGTPYR------VFTPFYR-------- 151
Query: 259 RGCI-----RIPSS-------FGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAA 306
RGC+ R+P + P S + S+ + L H + GE+AA
Sbjct: 152 RGCLNAAPPRLPLARPDAMQLVADPESSM---SIDALNLLPDHDWGAKMASHWQIGEAAA 208
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYI-YEEVKSYERERV 365
+ R++++ + L YK+ RN P ++++ S L G ISP Y ++ ++
Sbjct: 209 MTRLHDFV--EGGLNGYKDGRNFPARP-HTSRLSAHLHWGEISPNMAWYAAIEKRDQAGF 265
Query: 366 ANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYP 425
ND L EL WR++ + + + P+ + W D +W+ G TGYP
Sbjct: 266 DNDIDV-FLSELGWREFSHSLLYHFPHLPRQNLQPKFDSFPWQSDDNALRAWQQGKTGYP 324
Query: 426 LIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTY 485
+IDA M+EL TG+M NR R I SFLV+++ + W G WF CL+D D +N W +
Sbjct: 325 IIDAGMRELWETGYMHNRVRMIVGSFLVKNLLLHWHHGEAWFWDCLVDADLANNSAGWQW 384
Query: 486 GAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
AG G D R F+ Q +D +G Y ++P+L LP +
Sbjct: 385 IAGCGADAAPYFRVFNPITQGTKFDADGSYTRRFVPELATLPNK 428
>gi|393759561|ref|ZP_10348374.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162122|gb|EJC62183.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 514
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 131/466 (28%), Positives = 212/466 (45%), Gaps = 60/466 (12%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-------GALRA 136
+ W R DLR+ D+ AL A S LPV CV F F T +R
Sbjct: 49 LCWLRRDLRLQDHAALHHALQSG---LPVACV----------FVFDSTILDSLPADDVRV 95
Query: 137 QFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
F+++ L L++ L G L+ HG P + IP LA A VYA +E+ L
Sbjct: 96 AFILDSLQSLQEQLRQHGSELITVHGDPVQQIPLLANHLNAQTVYA-----NEDYEPAAL 150
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
R + L++Q LKL ++ D+I V+T ++++ A+
Sbjct: 151 TRDHAVSQSLAAQGR-------VLKLFKDQVIFARDEILTQQKQPYTVFTPYKRNWLARI 203
Query: 257 TVRGCIRIPSSFG---PPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
S G P P+ ++P +++L H +K + G + A + +
Sbjct: 204 QPSDIQAYDCSQGQWAPLPA----QALPCLKELGFHEEARTKLLSPAGWQGAQ--TLLQQ 257
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTK-----FSPWLASGSISPRYIYEEVKSYERERVAND 368
F + + Y E R D+ K +P L G++S R + E A
Sbjct: 258 FEPR--IHAYHERR------DFPAKRGVSYLAPHLRFGTLSIRQAVALAWPSDSEGAAT- 308
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
W L EL+WR++++ + + P + F++W+DG TGYP++D
Sbjct: 309 ---W-LSELIWREFYQQFLWHHPETAQESFKPAYKNLPFPNRDDWFQAWKDGQTGYPIVD 364
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A M++L+ +G+M NR R I+ SFLV+D+ IDWR G ++F LLDYD SN G W + A
Sbjct: 365 AAMRQLNQSGYMHNRLRMISASFLVKDLLIDWRWGEQYFAQKLLDYDMASNVGGWQWAAS 424
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G D + R F+ Q++ +D EG+++ ++P+L +L K+ + P
Sbjct: 425 TGCDAQPYFRIFNPITQSRKFDPEGQFIRRYVPELASLDKQAIHAP 470
>gi|407973400|ref|ZP_11154312.1| blue light photoreceptor cryptochrome [Nitratireductor indicus
C115]
gi|407431241|gb|EKF43913.1| blue light photoreceptor cryptochrome [Nitratireductor indicus
C115]
Length = 489
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/466 (25%), Positives = 212/466 (45%), Gaps = 63/466 (13%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+V FR+DLR+ DN AL A D V+ + +D G G R +L L
Sbjct: 18 LVLFRHDLRLADNLALSAAADCGRPVVAAFILDEESE------GMRPLGGARRWWLHHSL 71
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
L L + G L++R G+ E +LA+ GA V+ + ++ ++ ++ L++
Sbjct: 72 CALAGRLSDLGAELVLRRGRMAETTVALARETGAATVFWNRRYEPAAIHADKKMKAALRE 131
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF-----------DHSSLPDVYTHFRKSI 252
++++S H ++ G+ ++ PF + + P+ + F+ +
Sbjct: 132 NGIAAESFTGQLLHEPWRIKTGSGGFYRVFTPFWRTLSEGFVPREPADAPEKLSVFKGDV 191
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRV 310
E+ + DW +P P + G+R + GE+ A R+
Sbjct: 192 ESD-----------------RLDDWQLLPT-------RPDWAGGLRKAWTPGETGAHKRL 227
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
+ D ET + + + ++ SP L+ G I+P I++ ++ + T
Sbjct: 228 EAFL---DGGGKGYETLRDRMASEATSSLSPHLSHGEITPYQIWQHLEHRNDLTPGDLQT 284
Query: 371 YWVLFELMWRDYFRFI-------SLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTG 423
+ EL WR++ + + K NS F + W++D ++W+ G TG
Sbjct: 285 F--RKELGWREFCWHLLFHNPQLAAKNFNSDFD-------AFPWNRDDGALQAWQRGRTG 335
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
YP++DA M++L TG+M NR R I SFLV+D+ +DWR G +WF L+D DP SN NW
Sbjct: 336 YPVVDAAMRQLWQTGWMHNRARMIVASFLVKDLRLDWREGEQWFWDTLVDADPASNPANW 395
Query: 484 TYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
+ AG G D R F+ Q + +D G+Y+ ++P+L+ LP +
Sbjct: 396 QWVAGSGADAAPYFRIFNPVLQGEKFDSGGDYIRRYVPELENLPSK 441
>gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase [Bacillus cereus B4264]
gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264]
Length = 476
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 138/473 (29%), Positives = 215/473 (45%), Gaps = 37/473 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV F+ D R+ DN AL +A S E VLPVY D S G+ +L +
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE-VLPVYVQDETFS----------IGSAAKWWLHHAI 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ- 202
D++K L G L+IR G +E I SL K AVY + L + ++ L+
Sbjct: 55 IDVQKQLKALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILED 114
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR-GC 261
+ ++ + N P + T Y + PF Y F+K + K R
Sbjct: 115 KGIICKEFNSHLLLEPWIIKKKDNTEYKVFT-PF--------YNAFQKQVIPKPISRVQS 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
I+ SS SV + +P I H + + E A ++F K L
Sbjct: 166 IKWGSSLPASLSVSELHLLPTIPWTS-HMEAI-----WEPTEEGAYKTFKKFFSSK--LA 217
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERE-RVANDSTYWVLFELM 378
Y E R+ + + +P+L+ G IS + +Y + KS ER+ + +L+
Sbjct: 218 SYSEGRD-FPNQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI 276
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++ ++ Y + + + W+++++L W+ G TGYP IDA M+EL TG
Sbjct: 277 WREFSYYLLYHYPFTAYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTG 336
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
FM NR R SFLV+ + I W+ GA+WF LLD D +N W + AG G D R
Sbjct: 337 FMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFR 396
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--GGSYIEQIVSLKHGN 548
F+ Q + +D+ GEY+ W+P+L+ +P + + P +I Q ++K GN
Sbjct: 397 IFNPITQGEKFDKNGEYIRRWIPELRDIPNKYIHKPWEAPEHILQKSNIKLGN 449
>gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
RCB]
Length = 470
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/443 (27%), Positives = 212/443 (47%), Gaps = 36/443 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFR DLR D+ AL A ++ V + D P R F+ E
Sbjct: 6 ALVWFRRDLRDHDHAALSAALAEAQQVYCAFVFDSEILDP-----LPTRHDRRVHFIRES 60
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +L L RG L+IRHG+ + IP+LA+ G AV+ + + E ++
Sbjct: 61 LVELDAALRARGGGLIIRHGQAVDEIPALARRLGVSAVFTNR-------DYEPSAKRRDA 113
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
QV +++D + + + + I + D++ V+T ++ + + T
Sbjct: 114 QVARQLRNDDIAFHGVKDQAI-----FDGDEVLTQAGKAFSVFTPYKNAWLKRLTTADYA 168
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKV 322
P + + +P +E++ +P + G S A G +++ +D ++
Sbjct: 169 AWPCD--GRLAGQELAGIPTLEEIGF-TPTDLAELGIQPGMSGAKGLWDDF--SRDRIER 223
Query: 323 YKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
Y R+ + G Y S L G+IS R + R+ +A+ + W L EL+WR
Sbjct: 224 YGSLRDFPAVKGVSY---LSVHLRFGTISIRQLV-------RQALAHQADTW-LSELIWR 272
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D++ I + + H P +W+ + F +W +GCTGYPL+DA M++L+ +G+M
Sbjct: 273 DFYFMILDHFPHVAGHAFKPEYDAIQWASRPEAFAAWCEGCTGYPLVDAAMRQLNFSGWM 332
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYF 499
NR R + SFL +D+GIDWR+G ++F L D+D +N G W + + G D + R F
Sbjct: 333 HNRLRMVVASFLTKDLGIDWRLGEKYFAEQLNDFDLSANNGGWQWASSSGCDAQPYFRIF 392
Query: 500 SIPKQAQNYDREGEYVAYWLPQL 522
+ Q++ +D EG+++ ++P+L
Sbjct: 393 NPVTQSEKFDAEGKFIRRYVPEL 415
>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
Length = 469
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 125/472 (26%), Positives = 212/472 (44%), Gaps = 67/472 (14%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++ W R DLR+ D+ AL A S V+ V+ D P + R F+
Sbjct: 6 SLCWLRRDLRLDDHAALSSALQQSREVVCVFVFD-----RAILDSLPASDR-RVDFIHRS 59
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L +L+ L G L+ R+G +E +P+LA GA V+A ++ + + V L+
Sbjct: 60 LCELQARLQQHGSTLVCRYGWADEALPALAAELGAQVVFAAQDDEPASVTRDARVAGQLE 119
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q L L+ T+ D++ + V+T + ++ A+
Sbjct: 120 QAGCI------------LHLVKDHTLRARDELLTRTGTPFTVFTPYARAWLARLA----- 162
Query: 263 RIPSSFGPPPSVVDWGSVPLIEQL---------ELHSPKVS-KGMRFVGGESAALGRVNE 312
P + +W P +++L L S + G+ +G ++ + G
Sbjct: 163 --------PADMAEWPVAPYLDRLCPLPAQPLPSLASMGFTDTGLAALGWQAGSTGAQAA 214
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY- 371
L +Y E R+ D +++ SP L G++S R + R+A D+ +
Sbjct: 215 LAQFLPRLPLYHEERD-FPALDATSRLSPHLRFGTLSVRQLV---------RLATDAGHE 264
Query: 372 ----WVLFELMWRDYFRFI-----SLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCT 422
W L EL+WRD++ + L G++ P + W + F +W +G T
Sbjct: 265 GAQAW-LNELVWRDFYHQVLWHRPQLAQGHAF----KPVYDQLDWPGEADHFAAWTEGRT 319
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
GYPL+DA M++L TG+M NR R I SFL +D+ +DWR+G WF CLLD+D +N G
Sbjct: 320 GYPLVDAAMRQLRQTGWMHNRLRMICASFLAKDLLLDWRLGEAWFAECLLDFDFAANNGG 379
Query: 483 WTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
W + A G D + R F+ Q++ +D +G ++ +++P+L L E + P
Sbjct: 380 WQWAASTGCDAQPYFRIFNPVSQSRKFDPDGHFIRHFVPELARLDAEAIHAP 431
>gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
Length = 475
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 208/452 (46%), Gaps = 43/452 (9%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AI+WFR DLR LD L A + V+P++ +DP + GA +L
Sbjct: 6 AILWFRRDLR-LDANPALAAAMARGPVIPLFILDPAD----------RPGAASRWWLHGS 54
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L L ++L G L++R G P EI+P+L A A++ + + ++ ++ L
Sbjct: 55 LEALGESLARLGAPLILRRGSPSEILPALTAETDARAIFWNRLYEPHLIGRDKALKSALT 114
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ +S + S L W D P+ V+T F +S+ A+
Sbjct: 115 AQGIEVESFNGSL----LAEPWQVRTQSGD--PYK------VFTPFWRSL-AQMPFPAPH 161
Query: 263 RIP---SSFGPPPS--VVDWGSVPLIEQLELHSPKVSKGMR--FVGGESAALGRVNEYFW 315
P + P PS + W L P + G+R + GE AA R+ +
Sbjct: 162 PAPKKCAGLSPLPSDDLASW-------SLRPSKPDWAGGLRATWQPGERAAQSRLAAFI- 213
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN-DSTYWVL 374
D + Y+E R+ + + +++ SP L G +SP I+ V++ + ++ L
Sbjct: 214 -DDAMVGYREARD-IPAAEGTSRLSPHLHWGEVSPHRIWSAVEAATAAHPSGAEAGRAFL 271
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL WRD+ + + + + + W +D F +W G TGYP++DA M++L
Sbjct: 272 RELAWRDFAHHLLFHWPDIARENWKSQFDAFPWKEDTAAFTAWTKGETGYPIVDAGMRQL 331
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
TG+M NR R IA SFLV+ + +DWR GAEWFE L+D D N +W + AG G D
Sbjct: 332 WQTGWMHNRVRMIAASFLVKHLMVDWRRGAEWFENTLVDADLAVNRASWQWVAGSGADAA 391
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
R F+ Q + +D +G YV ++P+L L
Sbjct: 392 PYFRIFNPVLQGEKFDGDGAYVRAFVPELAKL 423
>gi|423641840|ref|ZP_17617458.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
gi|401277790|gb|EJR83729.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
Length = 476
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 135/480 (28%), Positives = 223/480 (46%), Gaps = 51/480 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV F+ D R+ DN AL +A S E VLPVY D S G+ +L +
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE-VLPVYIQDETFS----------IGSASKWWLHHAV 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ- 202
D++K L G L+IR G+ EE I SL + AVY + L + ++ L+
Sbjct: 55 IDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLED 114
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ ++ + N P + T Y V+T F + + + +
Sbjct: 115 KGIICKEFNSHLLLEPWIIKKKDNTEY-------------KVFTPFYNAFQKQVIPKPFS 161
Query: 263 RIPSSFGPPPSVVDWG-SVPL---IEQLELHSPKV--SKGMRFVGG--ESAALGRVNEYF 314
R+ S + WG S+P + +L+L P + + M + E A ++F
Sbjct: 162 RVQS--------IKWGNSLPASLSVSELQL-LPTIPWTSHMEVIWDPTEEGAYKTFKKFF 212
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERE-RVANDSTY 371
+K L Y E R+ G + + +P+L+ G IS + ++ + KS ER+ +
Sbjct: 213 SRK--LVSYSEGRD-FPGQNVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN 269
Query: 372 WVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
+ +L+WR++ ++ Y +++ + W ++++L W+ G TGYP IDA M
Sbjct: 270 SFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGM 329
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
+EL TGFM NR R SFLV+ + I W+ GA+WF LLD D +N W + AG G
Sbjct: 330 RELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGA 389
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--GGSYIEQIVSLKHGN 548
D R F+ Q + +D+ GEY+ W+P+L+ +P + + P +I Q ++K G+
Sbjct: 390 DASPYFRIFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGD 449
>gi|24112014|ref|NP_706524.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 301]
gi|30062127|ref|NP_836298.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 2457T]
gi|384542191|ref|YP_005726253.1| Deoxyribodipyrimidine photolyase [Shigella flexneri 2002017]
gi|415855606|ref|ZP_11530895.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2a str. 2457T]
gi|417721617|ref|ZP_12370462.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-304]
gi|417727019|ref|ZP_12375763.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-671]
gi|417732137|ref|ZP_12380807.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2747-71]
gi|417742117|ref|ZP_12390668.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2930-71]
gi|420340256|ref|ZP_14841781.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-404]
gi|24050832|gb|AAN42231.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
flexneri 2a str. 301]
gi|30040372|gb|AAP16104.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
flexneri 2a str. 2457T]
gi|281599976|gb|ADA72960.1| Deoxyribodipyrimidine photolyase [Shigella flexneri 2002017]
gi|313649656|gb|EFS14080.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2a str. 2457T]
gi|332761188|gb|EGJ91474.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2747-71]
gi|332763978|gb|EGJ94216.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-671]
gi|332768197|gb|EGJ98382.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2930-71]
gi|333021492|gb|EGK40742.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-304]
gi|391273445|gb|EIQ32270.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-404]
Length = 472
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 222/464 (47%), Gaps = 48/464 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR DLR+ DN AL A +SS VL +Y PR +T H P+ +A+ +
Sbjct: 5 LAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRKWET--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R E + A++ H Y + +E +++VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RALRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--ENGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L EL+WR+++R + Y + H + +++ W + ++W+ G TGYP+IDA
Sbjct: 273 LSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIIDAA 330
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 331 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTG 390
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 391 TDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|419305250|ref|ZP_13847161.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11D]
gi|419310306|ref|ZP_13852178.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11E]
gi|378152384|gb|EHX13481.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11D]
gi|378160613|gb|EHX21606.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11E]
Length = 472
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 219/460 (47%), Gaps = 40/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W+ G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMIIASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 395 PYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|417665850|ref|ZP_12315412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_O31]
gi|422775474|ref|ZP_16829130.1| DNA photolyase [Escherichia coli H120]
gi|433091036|ref|ZP_20277334.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE138]
gi|323947030|gb|EGB43044.1| DNA photolyase [Escherichia coli H120]
gi|397786401|gb|EJK97237.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_O31]
gi|431614035|gb|ELI83199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE138]
Length = 472
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 221/462 (47%), Gaps = 44/462 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGDYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + Y + H + +++ W + ++W+ G TGYP++DA M+
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 393 AAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|425421356|ref|ZP_18802564.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1288]
gi|408347197|gb|EKJ61427.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1288]
Length = 472
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 221/462 (47%), Gaps = 44/462 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGDYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMK 432
EL+WR+++R + Y + H + +++ W + ++W+ G TGYP++DA M+
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIVDAAMR 332
Query: 433 ELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 492
+L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 333 QLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD 392
Query: 493 PRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 393 AAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|218704025|ref|YP_002411544.1| deoxyribodipyrimidine photolyase [Escherichia coli UMN026]
gi|293403952|ref|ZP_06647946.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412]
gi|298379728|ref|ZP_06989333.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302]
gi|300900701|ref|ZP_07118851.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1]
gi|419936438|ref|ZP_14453451.1| deoxyribodipyrimidine photolyase [Escherichia coli 576-1]
gi|432352605|ref|ZP_19595890.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE2]
gi|432400842|ref|ZP_19643597.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE26]
gi|432424895|ref|ZP_19667412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE181]
gi|432459718|ref|ZP_19701876.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE204]
gi|432474755|ref|ZP_19716764.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE208]
gi|432521392|ref|ZP_19758549.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE228]
gi|432536704|ref|ZP_19773623.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE235]
gi|432630320|ref|ZP_19866265.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE80]
gi|432639863|ref|ZP_19875704.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE83]
gi|432664931|ref|ZP_19900518.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE116]
gi|432773876|ref|ZP_20008163.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE54]
gi|432884970|ref|ZP_20099650.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE158]
gi|432910975|ref|ZP_20117539.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE190]
gi|433017674|ref|ZP_20205936.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE105]
gi|433052012|ref|ZP_20239242.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE122]
gi|433066948|ref|ZP_20253776.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE128]
gi|433157671|ref|ZP_20342540.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE177]
gi|433177181|ref|ZP_20361633.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE82]
gi|218431122|emb|CAR11998.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
UMN026]
gi|291428538|gb|EFF01563.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412]
gi|298279426|gb|EFI20934.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302]
gi|300355813|gb|EFJ71683.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1]
gi|388401262|gb|EIL61920.1| deoxyribodipyrimidine photolyase [Escherichia coli 576-1]
gi|430878322|gb|ELC01752.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE2]
gi|430928609|gb|ELC49157.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE26]
gi|430958804|gb|ELC77381.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE181]
gi|430991670|gb|ELD08073.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE204]
gi|431009160|gb|ELD23784.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE208]
gi|431044746|gb|ELD55005.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE228]
gi|431073021|gb|ELD80758.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE235]
gi|431173903|gb|ELE73973.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE80]
gi|431184819|gb|ELE84565.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE83]
gi|431203672|gb|ELF02265.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE116]
gi|431320426|gb|ELG08068.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE54]
gi|431419449|gb|ELH01799.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE158]
gi|431444324|gb|ELH25347.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE190]
gi|431536549|gb|ELI12718.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE105]
gi|431575209|gb|ELI47956.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE122]
gi|431590068|gb|ELI61176.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE128]
gi|431681423|gb|ELJ47212.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE177]
gi|431709446|gb|ELJ73909.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE82]
Length = 472
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 133/457 (29%), Positives = 217/457 (47%), Gaps = 48/457 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAKLINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYA-QKETCSEELNVERL 196
L LR L +G+ LL R EII + A++ H Y Q E +VE
Sbjct: 59 LNGLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R P PS+ L+ P+ F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGMIEPAPSIT------------LNYPRQPFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QSGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALEGGAGSVWLN 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKL-----EYKWSQDQKLFESWRDGCTGYPLIDAN 430
EL+WR+++R + Y + H R +W ++ ++W++G TGYP++DA
Sbjct: 275 ELIWREFYRHLMTYYPSLCKH----RPFIVWTDRVQWQRNPAHLQAWQEGKTGYPIVDAA 330
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 331 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTG 390
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 391 TDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVP 427
>gi|157412647|ref|YP_001483513.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
gi|157387222|gb|ABV49927.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
Length = 478
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 137/492 (27%), Positives = 217/492 (44%), Gaps = 67/492 (13%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W+R DLR+ DN+AL KA S + Y D +S RA FL L
Sbjct: 7 LFWYRKDLRIFDNQALNKAISLSNAITSTYIFDENYSHDF-------NANSRAWFLANSL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L N G L+I G P IIP LAK A V+ K E+N + ++KNL++
Sbjct: 60 QELGNNWNKMGSRLVIEKGDPILIIPQLAKLIDAKFVFWNKSIEPYEINRDLKIKKNLKE 119
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
+ Q W + I ++ VY F K++++K G
Sbjct: 120 ------------KNIQFIESWDHLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLG--- 164
Query: 264 IPSSFGPPPSVVDWGSV--PLIEQLELHSP-----KVSKGMRFVG--------GESAALG 308
S+ + + + L E ++S K K ++F G GE AA
Sbjct: 165 ---SYNQYKVIFQFKDIDNKLKENKIINSSDSVLNKFLKNIKFPGSNICPCRPGEVAAES 221
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKF-SPWLASGSISPRYIYEEVKSYERERVAN 367
+ + +K K+Y L T F S L G+IS R ++ + + ++
Sbjct: 222 LLKNFINEK---KIYSYNSVRDLPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESH 278
Query: 368 DSTYWVLF---ELMWRDYFRFISLKYGNSLFHL----GGPRKL---EYKWSQDQKLFESW 417
+++ + EL+WR++ Y + LFH GP + ++ W + + F+ W
Sbjct: 279 ENSLSIETWQKELVWREF-------YQHCLFHFPELEKGPYRKKWDQFPWLNNNEWFQHW 331
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
G TG P++DA M++L+ TG+M NR R I SFLV+D+ +W+MG + F L+D D
Sbjct: 332 SKGETGVPIVDAAMRQLNSTGWMHNRCRMIVASFLVKDLICNWQMGEKKFMETLVDGDLA 391
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKA------LPKERRN 531
+N G W + A G DP+ R F+ QA+ +D EY+ W+P+L L E N
Sbjct: 392 ANNGGWQWSASSGMDPKPLRIFNPYTQAKKFDPICEYIKSWIPELSKVSNSDILNGEISN 451
Query: 532 FPGGSYIEQIVS 543
+Y + IV+
Sbjct: 452 LENNNYSKPIVN 463
>gi|117924446|ref|YP_865063.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus marinus
MC-1]
gi|117608202|gb|ABK43657.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus marinus
MC-1]
Length = 476
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 215/467 (46%), Gaps = 64/467 (13%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
IVWFR DLR+ DN ALL A + VLPVY H G GA R L +
Sbjct: 7 TVIVWFRRDLRLSDNPALLAA-TAMGQVLPVYI----HENNQQEGG---GGAWRWG-LQQ 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LA L +L + L G P ++P +A + GA VY + + + +R ++++L
Sbjct: 58 ALAALNADLQGK---LCCYVGDPARLLPEVAHAVGATGVYWNRLYTPQAIKRDRAIKQSL 114
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
+ L +S + S L+W + D P+ V+T + + RG
Sbjct: 115 IERGLQVRSFNGS-------LLWEPWQVLKADKTPYK------VFTPYYR--------RG 153
Query: 261 CI--RIPSSFGPPPSVVDWGSVPL------IEQLE-LHSPKVSKGMRFVG----GESAAL 307
C+ +P P V W ++P ++ L+ L VS ++ G GE AA
Sbjct: 154 CLVQDVPRQPMDAPPTVTWATLPAAAPAPSMQALDALLLGDVSWHKKWHGIWSMGEEAAQ 213
Query: 308 GRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVAN 367
R + L Y + R + G D +++ S L G +SP ++ ++ + + +
Sbjct: 214 TRFEHFL--SHGLACYDQGR-DFPGRDCTSRLSTALQYGLLSPNQVWYGLEHAKADEHSV 270
Query: 368 DSTYWVLFELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCT 422
D EL WR++ F F SL + N P+ + W +D+ W+ G T
Sbjct: 271 DK---FRSELAWREFAYYQLFHFPSLPHKNF-----QPKFDHFPWLEDEVALGRWQTGQT 322
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
G P++DA M+EL TG M NR R + SFLV+++ +DWR GA WF+ CL+DYD N +
Sbjct: 323 GIPIVDAGMRELWQTGVMHNRVRMLVGSFLVKNLLLDWRAGAAWFKDCLVDYDLAINSAS 382
Query: 483 WTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
W + AG G D R F+ Q + +DR G Y ++P+L LP +
Sbjct: 383 WQWVAGCGADAAPYFRIFNPVTQGEKFDRNGTYTRRFVPELANLPDQ 429
>gi|365160129|ref|ZP_09356302.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363624172|gb|EHL75256.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 476
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 137/473 (28%), Positives = 216/473 (45%), Gaps = 37/473 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV F+ D R+ DN AL +A S E VLPVY D S G+ +L +
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE-VLPVYVQDETFS----------IGSAAKWWLRHAI 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ- 202
D++K L G L+IR G +E I SL K AVY + L + ++ L+
Sbjct: 55 MDVQKQLKALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILED 114
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR-GC 261
+ ++ + N P + T Y + PF Y F+K + K R
Sbjct: 115 KGIICKEFNSHLLLEPWIIKKKDNTEYKVFT-PF--------YNAFQKQVIPKPISRVQS 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
I+ SS SV + +P I H + + E A ++F K L
Sbjct: 166 IKWGSSLPASLSVSELHLLPTIPWTS-HMEAI-----WEPTEEGAYKTFKKFFSSK--LA 217
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERE-RVANDSTYWVLFELM 378
Y E R+ + + +P+L+ G IS + +Y + KS ER+ + +L+
Sbjct: 218 SYSEGRD-FPNQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI 276
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++ ++ Y +++ + W ++++L W+ G TGYP IDA M+EL TG
Sbjct: 277 WREFSYYLLYHYPFTVYRPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTG 336
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
FM NR R SFLV+ + I W+ GA+WF LLD D +N W + AG G D R
Sbjct: 337 FMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFR 396
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--GGSYIEQIVSLKHGN 548
F+ Q + +D+ GEY+ W+P+L+ +P + + P ++I Q ++K G+
Sbjct: 397 IFNPITQGEKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPAHILQKANIKLGD 449
>gi|88802270|ref|ZP_01117797.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
23-P]
gi|88781128|gb|EAR12306.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
23-P]
Length = 434
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 203/447 (45%), Gaps = 43/447 (9%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
V I WFR DLR+ DN A S VLP++ D K A R F+
Sbjct: 4 AVNIFWFRRDLRLDDNVGFYNALKSEHPVLPIFIFDEDILDK-----LQKEDA-RLNFIY 57
Query: 141 ECLADLRKNLMNR-GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+ L D+R L + G ++ + HG P I L + H V+ ++ E E R
Sbjct: 58 DTLQDMRAILEKKHGSSIAMLHGNPSAIFEKLISEYSIHTVFTNRD--YEPYATE---RD 112
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
N Q +LSS T Q+ + + D +P+ VYT F K + +
Sbjct: 113 NKIQALLSSNGIHFDTFKDQV-IFEKNEVVKKDGLPY------KVYTPFMKVWKEQFKTY 165
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
F S ++ LI+ EL + +S +G E A ++ ++ L
Sbjct: 166 NL-----DFYYTSSFLE----NLIQNTELPNLHLSD----IGFEVAK-QKIKKHTVTPKL 211
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
++ Y+ETRN D +++ P L G++S R + E+ S + E +W EL+W
Sbjct: 212 IQTYEETRN-FPALDSTSRLGPHLRFGTVSVRKMMEKAISEKNE------IFWQ--ELIW 262
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
R++F I + + + P+ +W ++ F W G TGYPL+DA M++L+ TGF
Sbjct: 263 REFFMQILWHFPYTSKNSFKPKYDRIEWRNNEAEFNKWCQGETGYPLVDAGMRQLNETGF 322
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RY 498
M NR R + SFL + + IDWR G +F L DY+ SN GNW + AG G D R
Sbjct: 323 MHNRIRMLVGSFLCKHLLIDWRWGEAYFAKKLHDYEMASNVGNWQWVAGSGVDAAPYFRI 382
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKAL 525
F+ Q + +D++ Y+ W+P + L
Sbjct: 383 FNPTTQIKKFDKDLAYIKKWVPNFQEL 409
>gi|421082068|ref|ZP_15542962.1| Putative deoxyribodipyrimidine photolyase [Pectobacterium wasabiae
CFBP 3304]
gi|401703103|gb|EJS93332.1| Putative deoxyribodipyrimidine photolyase [Pectobacterium wasabiae
CFBP 3304]
Length = 488
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 137/467 (29%), Positives = 216/467 (46%), Gaps = 51/467 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALR-AQFLIE 141
+VW RNDLRV DN AL A D VL V+ P +Q H ALR A FL+E
Sbjct: 5 VVWLRNDLRVTDNLALHAACHDPHATVLAVFIATP--AQWKKH-----DMALRQATFLLE 57
Query: 142 CLADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL 196
L ++ L +G+ L + ++ A+ Y + +E L ++
Sbjct: 58 NLTLVQHALAEKGIPLHYHECTDFSASVDWLVQFCAQQQATDLFYNHQYEINERLR-DKQ 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKS----- 251
V+ L V+ +D P L MY V+T FR++
Sbjct: 117 VKDRLADSVVCHGYHDSLLLPPGSVLTGNGEMY-------------KVFTPFRQAFIKRL 163
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
+EA T C+ P G P S Q+E++S F GE AL ++
Sbjct: 164 LEADTT---CVPAPDVRGEPIKDKVALSPFSYPQVEVNSDD------FPCGERVALQQLR 214
Query: 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSY---ERERVAND 368
+ ++ ++ Y R+ P ++K SP+LA G +SPR + +++ ER
Sbjct: 215 RFC--REQVQDYDRQRDFPAQPG-TSKLSPYLALGIVSPRQCFNRLRTECPEMLERREGG 271
Query: 369 STYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEY-KWSQDQKLFESWRDGCTGYPLI 427
+ W EL+WR+++R + + + H ++ KW + + +W+ G TGYP++
Sbjct: 272 AFTW-FNELVWREFYRHLIVSWPQLCKHRPFTAWTQWVKWRESPEDLAAWQQGKTGYPIV 330
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA M++L+ TG+M NR R I SFLV+D+ IDWR G +F + LLD D +N G W + A
Sbjct: 331 DAAMRQLNETGWMHNRLRMICASFLVKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAA 390
Query: 488 GVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
G D R F+ Q + +D EG ++ +WLP+L A+P + + P
Sbjct: 391 STGTDAAPYFRIFNPTTQGERFDPEGRFIRHWLPELTAVPDKDIHQP 437
>gi|420345922|ref|ZP_14847350.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 965-58]
gi|391275301|gb|EIQ34091.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 965-58]
Length = 472
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 128/464 (27%), Positives = 222/464 (47%), Gaps = 48/464 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+ WFR DLR+ DN AL A +SS VL +Y PR +T H P+ +A+ +
Sbjct: 5 LAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWET--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYAQKETCSE---ELNVE 194
L L+ L +G+ LL R E + A++ H Y + +E +++VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVE 118
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA 254
R +R + + D S P ++ G + PF ++ L R+ +
Sbjct: 119 RALRN------VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-P 167
Query: 255 KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEY 313
+C +R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 168 ECVAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQF 215
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWV 373
++ Y++ R+ + +++ S LA+G +SPR + + + + + +
Sbjct: 216 C--ENGAGEYEQQRD-FPAVEGTSRLSVSLATGGLSPRQCLHRLLAEQPQALDGGAGSVW 272
Query: 374 LFELMWRDYFRFISLKYGNSLFH---LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L EL+WR+++R + Y + H + +++ W + ++W+ G TGYP++DA
Sbjct: 273 LSELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQ--WQSNPAHLQAWQKGKTGYPIVDAA 330
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 331 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTG 390
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
D R F+ Q + +DREGE++ WLP+L+ +P + + P
Sbjct: 391 TDAAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEP 434
>gi|300918366|ref|ZP_07134966.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1]
gi|432532859|ref|ZP_19769854.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE234]
gi|300414429|gb|EFJ97739.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1]
gi|431063208|gb|ELD72458.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE234]
Length = 472
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 130/453 (28%), Positives = 216/453 (47%), Gaps = 40/453 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR T H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT--HNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIKPAPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLS 274
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
EL+WR+++R + Y + H + +W + ++W++G TGYP++DA M++L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +D EGE++ WLP+L+ +P
Sbjct: 395 PYFRIFNPITQGEKFDHEGEFIRQWLPELRDVP 427
>gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
Length = 476
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 136/477 (28%), Positives = 223/477 (46%), Gaps = 45/477 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
I+ F+ D R+ DN AL +A S E V+PVY D S G+ +L +
Sbjct: 6 IMMFQKDFRLYDNPALFEAAQSGE-VVPVYVQDETFS----------IGSASKWWLHHAI 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
D++K L G L+IR G +E I SL + AVY +C + +RL +
Sbjct: 55 IDVQKQLEALGSTLIIRKGNTQEEILSLIEQLNITAVYWN--SCYDP---DRLKSNQKMK 109
Query: 204 VVLSSQSND-KSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCT----- 257
+VL + K N L W + D+ ++ Y F+K + K
Sbjct: 110 IVLEDKGIICKEFNSHLLLEPW--IIKKKDNT--EYKVFTPFYNAFQKQVIPKPISKVQR 165
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
++G +P+S SV + +P I H + + E A ++F+ K
Sbjct: 166 IKGGSSLPASL----SVSELHLLPTIPWTS-HIESI-----WNPTEEGAYKTCKKFFFSK 215
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERE-RVANDSTYWVL 374
L Y E R+ + + +P+L+ G IS R++Y + KS ER+ + +
Sbjct: 216 --LASYSEGRD-FPNENAHSMLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFI 272
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKEL 434
+L+WR++ ++ Y +++ + W+++++L W+ G TGYP IDA M+EL
Sbjct: 273 RQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMREL 332
Query: 435 SMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 494
TGFM NR R SFLV+ + I W+ GA+WF LLD D +N W + AG G D
Sbjct: 333 WQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADAS 392
Query: 495 ED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--GGSYIEQIVSLKHGN 548
R F+ Q + +D++GEY+ W+P+L+ +P + + P +I Q ++K G+
Sbjct: 393 PYFRIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGD 449
>gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
Length = 502
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 133/473 (28%), Positives = 217/473 (45%), Gaps = 48/473 (10%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
+G +VW R DLR+ DN AL A ++ V+ VY + R+ FP G + +L
Sbjct: 24 EGPVLVWLRQDLRLRDNPALYAAANTGRSVIVVYLLPNRNDD-----WFP--GGAASWWL 76
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
L L NL R L++R G + LA+ A AV+ + C E + ER
Sbjct: 77 HHSLDALTTNLHKRHHQLILRSGSAATEMTRLAEDCKAAAVFWNR--CYEPADRER---- 130
Query: 200 NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR 259
+ + +Q+ + + P LI T+ P+ V+T F K+ ++
Sbjct: 131 DEKTADKLAQAGYQVRSFPGSLLIEPWTLSTKQGDPYQ------VFTPFWKAARSRVEFA 184
Query: 260 GCIRIPSSFGPP------PSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
+ P S P + DW +P ++ + P+ R+ GE AA
Sbjct: 185 SPLPAPESLKTPDQWPDSEELADWKLLPTLDWAD-EFPE-----RWKPGEDAAHAA---- 234
Query: 314 FWKKDLLKVYKETRNEMLGPDY--STKFSPWLASGSISPRYIYEE-VKSYERERVANDS- 369
W+K L E E P + +++ SP L G ISPR IY E V+ R++ A +S
Sbjct: 235 -WQKFLDDNIAEYGTERDVPSHHGTSRLSPHLHYGEISPRQIYAEAVEKMNRKQTATESF 293
Query: 370 -----TYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGY 424
Y L E+ WR++ + + ++ + + ++ W + ++W+ G TGY
Sbjct: 294 EKNVNVY--LSEIGWREFGYHVLYHFPHTPENPLREKFADFNWETKKSWLKAWQQGQTGY 351
Query: 425 PLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWT 484
P++DA M+EL TG+M NR R I SFL +D+ I W G++WF L+D D +N W
Sbjct: 352 PIVDAGMRELWRTGWMHNRVRMIVASFLTKDLRIHWLEGSKWFWDTLVDADLANNTLGWQ 411
Query: 485 YGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGS 536
+ +G G D R F+ +Q++ +D +G Y+ W P+L LP + + P +
Sbjct: 412 WASGCGADAAPYFRVFNPTRQSEKFDPKGNYLRRWCPELADLPDKYLHCPADA 464
>gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
Length = 476
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 137/473 (28%), Positives = 216/473 (45%), Gaps = 37/473 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV F+ D R+ DN AL +A S E VLPVY D S G+ +L +
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE-VLPVYVQDETFS----------IGSAAKWWLHHAI 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ- 202
D++K L G L+IR G +E I SL K AVY + L + ++ L+
Sbjct: 55 IDVQKQLEALGSTLIIRKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMMLED 114
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR-GC 261
+ ++ + N P + T Y + PF Y F+K + K R
Sbjct: 115 KGIICKEFNSHLLLEPWIIKKKDNTEYKVFT-PF--------YNAFQKQVIPKPISRVQS 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
I+ SS SV + +P I H + + E A ++F K L
Sbjct: 166 IKWGSSLPASLSVSELHLLPTIPWTS-HMEAI-----WEPTEEGAYKTFKKFFSSK--LA 217
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERE-RVANDSTYWVLFELM 378
Y E R+ + + +P+L+ G IS + +Y + KS ER+ + +L+
Sbjct: 218 SYSEGRD-FPNQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLI 276
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++ ++ Y +++ + W+++++L W+ G TGYP IDA M+EL TG
Sbjct: 277 WREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTG 336
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
FM NR R SFLV+ + I W+ GA+WF LLD D +N W + AG G D R
Sbjct: 337 FMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFR 396
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--GGSYIEQIVSLKHGN 548
F+ Q + +D+ GEY+ W+P+L+ +P + + P +I Q ++K G+
Sbjct: 397 IFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGH 449
>gi|423458833|ref|ZP_17435630.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
gi|401145461|gb|EJQ52985.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
Length = 476
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 136/481 (28%), Positives = 220/481 (45%), Gaps = 53/481 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV F+ D R+ DN AL +A S E VLPVY D S G+ +L +
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE-VLPVYVQDETFS----------IGSASKWWLHHAI 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVY------AQKETCSEELNV---- 193
D++K L G L+IR G E I SL + G AVY + C++++ +
Sbjct: 55 IDVKKQLEALGSTLIIRKGNTLEEILSLIEQLGITAVYWNICYDPDRLQCNQKMKIMLEE 114
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ K +L K ++ + K+ T Y+ F +P K I
Sbjct: 115 KGIICKEFNSHLLLEPWIIKKKDNTEYKVF--TPFYN----AFQKQEIP-------KPIS 161
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313
++G +P+S SV + +P I H + + E A ++
Sbjct: 162 KVQRIKGGSSLPASL----SVSELHLLPTIPWTS-HIESI-----WEPTEEGAYKACKKF 211
Query: 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERE-RVANDST 370
F K L Y E R+ + + +P+L+ G IS R++Y + KS ER+ +
Sbjct: 212 FSSK--LASYSEGRD-FPNQNAHSMLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQV 268
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
+ + +WR++ ++ Y +++ + W+ +++L W+ G TGYP IDA
Sbjct: 269 NSFIRQFIWREFSYYLLYHYPFTVYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAG 328
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M+EL TGFM NR R SFLV+ + I W+ GA+WF LLD D +N W + AG G
Sbjct: 329 MRELWQTGFMHNRARMAVASFLVKHLLIPWQEGAKWFLDTLLDADIANNTMGWQWVAGSG 388
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--GGSYIEQIVSLKHG 547
D R F+ Q + +D+ GEY+ W+P+LK +P + + P +I Q ++K G
Sbjct: 389 ADASPYFRIFNPITQGEKFDKNGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIKLG 448
Query: 548 N 548
+
Sbjct: 449 H 449
>gi|170733532|ref|YP_001765479.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
gi|169816774|gb|ACA91357.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
Length = 519
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 206/458 (44%), Gaps = 42/458 (9%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
AIVWFR+DLRV D AL +A +S ++ V+ D T P G +L
Sbjct: 37 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFVDD------TGAGAGPALGGAARWWLHGS 90
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
LA L L G LL+ G + I + GA AVY + ++ + + ++ +L+
Sbjct: 91 LAGLDAALARHGGRLLLLRGDAQREIERVVGDTGAAAVYWNRRYAQQQRDADAALKASLK 150
Query: 203 QVVLSSQSNDKST-NHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ +S++ S N P L Y V+T + ++ TV
Sbjct: 151 ARGVTVESSNGSLLNEPWEVLTGSGGPYQ-------------VFTAYWRAARRDRTVAAP 197
Query: 262 IRIPS--SFGP-PPSVVDWGSVPLIEQLELHSPKVSKGMRFV---GGESAALGRVNEYFW 315
+ P +F P P +V D L H+P + G+R E+ AL R++ +
Sbjct: 198 LPAPERIAFHPWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDRFL- 256
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW--V 373
L Y + R+ P +++ SP+L G++SPR ++ V+ A + +
Sbjct: 257 -TTSLAGYADARDRPDRP-ATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAAYAAHADKF 314
Query: 374 LFELMWRDY-----FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
L EL WR++ + F +L N W D +W+ G TGYPL+D
Sbjct: 315 LSELGWREFSYTLLYHFPALATDNFRAQFDA-----MPWRDDPAALRAWQRGRTGYPLVD 369
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAG 488
A ++EL TG+M NR R + SFL++ + IDWR G WF L+D DP +N +W + AG
Sbjct: 370 AGLRELWTTGWMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAG 429
Query: 489 VGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
G D R F+ Q Q +D G YV W+P+L L
Sbjct: 430 CGADAAPYFRIFNPVAQGQKFDPGGAYVRRWVPELAGL 467
>gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase [Bacillus cereus G9842]
gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
G9842]
Length = 476
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 137/473 (28%), Positives = 218/473 (46%), Gaps = 37/473 (7%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IV F+ D R+ DN AL +A S E VLPVY D S G+ +L +
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGE-VLPVYVQDETFS----------IGSAAKWWLHHAV 54
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ- 202
D++K L G L+IR G+ EE I SL + AVY + L + ++ L+
Sbjct: 55 IDVKKQLEALGSTLIIRKGRTEEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLED 114
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVR-GC 261
+ ++ + N P + T Y + PF Y F+K + K +
Sbjct: 115 KGIICKEFNSHLLLEPWIIKKKDNTEYKVFT-PF--------YNAFQKQVIPKPISKVQS 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321
I+ SS SV + +P I H + + E A ++F K L
Sbjct: 166 IKWGSSLPASLSVSELHLLPTIPWTS-HIESI-----WEPTEEGAYKTFKKFFSSK--LA 217
Query: 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV--KSYERE-RVANDSTYWVLFELM 378
Y E R+ + + +P+L+ G IS + +Y + KS ER+ + + +L+
Sbjct: 218 SYSEGRD-FPNQNAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLI 276
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR++ ++ Y +++ + W+++++L W+ G TGYP IDA M+EL TG
Sbjct: 277 WREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTG 336
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-R 497
FM NR R SFLV+ + I W+ GA+WF LLD D +N W + AG G D R
Sbjct: 337 FMHNRTRMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFR 396
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP--GGSYIEQIVSLKHGN 548
F+ Q + +D+ GEY+ W+P+L+ +P + + P +I Q ++K GN
Sbjct: 397 IFNPITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGN 449
>gi|432859754|ref|ZP_20085506.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE146]
gi|431407715|gb|ELG90921.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE146]
Length = 472
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 132/456 (28%), Positives = 219/456 (48%), Gaps = 46/456 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWAAHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSL-AKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R EI+ + ++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCGENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVVF--EGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIDPAPSIT------------LNYPRQPFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
+ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QSGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLN 274
Query: 376 ELMWRDYFRFISLKY----GNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANM 431
EL+WR+++R + Y + F + R +W ++ F++W++G TGYP++DA M
Sbjct: 275 ELIWREFYRHLMTYYPLLCKHRPFIVWTDR---VQWQRNPAHFQAWQEGKTGYPIVDAAM 331
Query: 432 KELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGN 491
++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 332 RQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGT 391
Query: 492 DPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D R F+ Q + +DREGE++ WLP+L+ +P
Sbjct: 392 DAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVP 427
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,738,531,212
Number of Sequences: 23463169
Number of extensions: 434699021
Number of successful extensions: 876129
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4021
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 860266
Number of HSP's gapped (non-prelim): 6699
length of query: 577
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 429
effective length of database: 8,886,646,355
effective search space: 3812371286295
effective search space used: 3812371286295
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)