BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044814
(577 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/542 (67%), Positives = 437/542 (80%), Gaps = 7/542 (1%)
Query: 39 NIQQKVIPHCQVIPGADSREINHIVEETFGRYTSKALKRNGKG-VAIVWFRNDLRVLDNE 97
++ + P Q +PG E+ + E+TF RY S L + VAIVWFRNDLRVLDNE
Sbjct: 35 SLTARTTPTVQNVPGLTPEEMERVCEQTFQRYESGGLGKRKGKGVAIVWFRNDLRVLDNE 94
Query: 98 ALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNL 157
ALL+AW SSE +LPVYCVDPR TT++FG PKTGALRAQF+IECL DL++NL+ RGL+L
Sbjct: 95 ALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECLNDLKRNLVKRGLDL 154
Query: 158 LIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQS---NDK- 213
LI+HGKPE+I+PSLAK++ AH VYA KETCSEE+ VE++V +NLQ++V S ND
Sbjct: 155 LIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQKLVSPSSGGIGNDPG 214
Query: 214 STNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPS 273
S N +L+L+WG+TMYH+DD+PFD SLPDVYT FRKS+E K VR C ++P+SFGPPP
Sbjct: 215 SGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSKVRNCTKLPTSFGPPPE 274
Query: 274 VVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGP 333
V DWG VP + +L L KVSKGM FVGGESAALGRV++YFWKKDLLKVYKETRN MLG
Sbjct: 275 VGDWGHVPQVSELGLQQEKVSKGMNFVGGESAALGRVHDYFWKKDLLKVYKETRNGMLGA 334
Query: 334 DYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNS 393
DYSTKFSPWLASGS+SPR+IYEEVK YE+ER++NDSTYWVLFEL+WRDYFRF+S+K N
Sbjct: 335 DYSTKFSPWLASGSLSPRFIYEEVKRYEKERLSNDSTYWVLFELIWRDYFRFLSIKLANL 394
Query: 394 LFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLV 453
LF GGP+K+ WSQDQ +F++WR G TGYPLIDANMKEL+ TG+MSNRGRQI CSFLV
Sbjct: 395 LFQAGGPQKVNINWSQDQTMFDAWRRGQTGYPLIDANMKELAATGYMSNRGRQIVCSFLV 454
Query: 454 RDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGE 513
RDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYD EGE
Sbjct: 455 RDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGE 514
Query: 514 YVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNINQNRNQNDSL-TRTGR-RNNFKGK 571
+VAYWLP+L+ALP+E+R+ PG Y+ IV+LKHG + + + +R GR +N + +
Sbjct: 515 FVAYWLPELRALPREKRHSPGMMYLNPIVALKHGYTKKTGDSKTAFSSRRGRPEDNRRKR 574
Query: 572 HA 573
H
Sbjct: 575 HG 576
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/510 (71%), Positives = 419/510 (82%), Gaps = 14/510 (2%)
Query: 43 KVIPHCQVIPGADSREINHIVEETFGRY---TSKALKRNGKGVAIVWFRNDLRVLDNEAL 99
K+ H +P EI+ + +TF RY +S ++KR GKGV I+WFRNDLRVLDN+AL
Sbjct: 43 KMNDHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDAL 102
Query: 100 LKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLI 159
KAW SS+ +LPVYC+DPR TT+ F FPKTGALR FL+ECL DLRKNLM RGLNLLI
Sbjct: 103 YKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLI 162
Query: 160 RHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQ 219
R GKPEEI+PSLAK FGA V+A KETCSEE++VERLV + L++V N +
Sbjct: 163 RSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRV----------GNSTK 212
Query: 220 LKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGS 279
L+LIWG+TMYH DD+PFD LPDVYT FRKS+EAKC++R RIP S GP PSV DWG
Sbjct: 213 LELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGD 272
Query: 280 VPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKF 339
VP +E+L + +V++GMRFVGGESA +GRV EYFWKKDLLKVYKETRN MLGPDYSTKF
Sbjct: 273 VPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKF 332
Query: 340 SPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG 399
SPWLA G ISPR+IYEEV+ YE+ERVAN+STYWVLFEL+WRDYFRF+S+K GNSLFHLGG
Sbjct: 333 SPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGG 392
Query: 400 PRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGID 459
PR ++ KWSQDQKLFESWRD TGYPLIDANMKELS TGFMSNRGRQI CSFLVRDMG+D
Sbjct: 393 PRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLD 452
Query: 460 WRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWL 519
WRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYD EGEYVA+WL
Sbjct: 453 WRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWL 512
Query: 520 PQLKALPKERRNFPGG-SYIEQIVSLKHGN 548
QL+ LPKE+R++PG Y++ +V LKHGN
Sbjct: 513 QQLRRLPKEKRHWPGRLMYMDTVVPLKHGN 542
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/499 (72%), Positives = 421/499 (84%), Gaps = 9/499 (1%)
Query: 67 FGRYTSKALKRNGKG-VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQ-TTY 124
F RYTS +++R+G G VAIVWFRNDLRVLDNEA+++AW +S+ VLPVYCVDPR S +T+
Sbjct: 69 FLRYTSPSMRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTH 128
Query: 125 HFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184
+FGFPKTGALRAQFLIECL DL++NL +GL+LLIRHGKPE+I+PS+AK+ AH VYA K
Sbjct: 129 YFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHK 188
Query: 185 ETCSEELNVERLVRKNLQQVVL--SSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP 242
ETCSEEL VE LVRK L+QVV+ SN K +P+L+LIWG T+YH+DD+PF ++LP
Sbjct: 189 ETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLP 248
Query: 243 DVYTHFRKSIEAKCTVRGCIRIPSSFGPPP-----SVVDWGSVPLIEQLELHSPKVSKGM 297
DVYT FRK++E+K +VR C ++P S GPPP + WG+VP +E L L K KGM
Sbjct: 249 DVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGM 308
Query: 298 RFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV 357
FVGGESAALGRV+EYFWKKD LKVYKETRN MLGPDYSTKFSPWLASGS+SPRYI EEV
Sbjct: 309 HFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEV 368
Query: 358 KSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESW 417
K YE++R+ANDSTYWVLFEL+WRDYFRFIS KYGNS+FHLGGPR +E KWSQDQ LFESW
Sbjct: 369 KRYEKQRIANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGGPRNVESKWSQDQALFESW 428
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPC 477
RDG TGYPLIDANMKEL TGFMSNRGRQI CSFLVRDMGIDWRMGAEWFETCLLDYDP
Sbjct: 429 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 488
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSY 537
SNYGNWTYGAGVGNDPREDRYFSIPKQA+ YD +GEYVAYWLP+L+++ KERRNFPG SY
Sbjct: 489 SNYGNWTYGAGVGNDPREDRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGASY 548
Query: 538 IEQIVSLKHGNINQNRNQN 556
I+Q+V LK +Q R+Q
Sbjct: 549 IKQVVPLKFDGGHQKRDQQ 567
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/473 (49%), Positives = 313/473 (66%), Gaps = 19/473 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
V I RNDLR+ DNE L A +++ ++P+YC DPRH T++F FPKTG R +FL+E
Sbjct: 7 VIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLE 66
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFG-AHAVYAQKETCSEELNVERLVRKN 200
+ DLR L +G NLL+R GKPEE+I L K G AV +E EE +VE V++
Sbjct: 67 SVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQA 126
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVR 259
++ + Q+ WG+T+YH +D+PF H SSLPDVYT FRK++E + VR
Sbjct: 127 CTRLGIKYQT------------FWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVR 174
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRF--VGGESAALGRVNEYFWKK 317
++P P PS ++ GSVP E + P F GGES AL R+ YFW+
Sbjct: 175 PTFQMPDKLKPLPSGLEEGSVPSHEDFDQQDPLTDPRTAFPCSGGESQALQRLEHYFWET 234
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+L+ YK+TRN ++G DYSTKF+PWLA G +SPRYIYE++ YE+ER AN STYWV+FEL
Sbjct: 235 NLVASYKDTRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGKYEKERTANQSTYWVIFEL 294
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYFRF++LKYG +F L G + + W +D KLF++W++G TG P +DANM+EL+MT
Sbjct: 295 LWRDYFRFVALKYGRRIFFLRGLQDKDIPWKRDPKLFDAWKEGRTGVPFVDANMRELAMT 354
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ SFL +D+GIDWRMGAEWFE L+DYD CSNYGNW Y AG+GNDPRE+R
Sbjct: 355 GFMSNRGRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPRENR 414
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNIN 550
F++ KQ +YD G+Y+ W+P+L+ + + P + SL H N++
Sbjct: 415 KFNMIKQGLDYDSGGDYIRLWVPELQQIKGGDAHTP---WALSNASLAHANLS 464
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 219/448 (48%), Positives = 298/448 (66%), Gaps = 16/448 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
I RNDLR+ DNE A ++E ++P+YC DPRH Q TYH+ FPKTG R +FL++
Sbjct: 6 TVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLLD 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERLVRKN 200
+ DLR L G LL+R GKPE+++ L K G+ + A +E SEE +VE +++
Sbjct: 66 SVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKEI 125
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDH-SSLPDVYTHFRKSIEAKCTVR 259
Q N +++ WG+T+YH DD+PF H LPDVYT FRK++EA+ VR
Sbjct: 126 CCQ------------NKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVR 173
Query: 260 GCIRIPSSFGPPPSVVDWGSVPLIEQLELHSP--KVSKGMRFVGGESAALGRVNEYFWKK 317
+ P PPS ++ G +P + L P GGE+ AL R+ YFW
Sbjct: 174 PVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDT 233
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ + YKETRN M+G D+STKFSPWLA G ISPRYIYE++K YE ER AN STYWV+FEL
Sbjct: 234 NAVATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTANQSTYWVIFEL 293
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WRDYF+F++LKYGN +F++ G + W+ D K+F++W++G TG P +DANM+EL++T
Sbjct: 294 LWRDYFKFVALKYGNRIFYMNGLQDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALT 353
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
GFMSNRGRQ SFL +D+G+DWR+GAEWFE L+D+D CSNYGNW Y AG+GNDPRE+R
Sbjct: 354 GFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPRENR 413
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKAL 525
F++ KQ +YD G+YV W+P+L+ +
Sbjct: 414 KFNMIKQGLDYDNNGDYVRQWVPELRGI 441
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/453 (49%), Positives = 302/453 (66%), Gaps = 14/453 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+VWFRNDLR+ D+E L +A S + VYC DPR T H GF KTG R+ FL +
Sbjct: 7 TVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQT-HQGFAKTGPWRSNFLQQ 65
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ +L ++L G LL+ G PE++IP +AK A +Y +E EEL+VER + K L
Sbjct: 66 SVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQL 125
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAK-CTVRG 260
+ + + K WG+T+ H +D+PF LPD++T FRK IE K ++R
Sbjct: 126 TILGIEA------------KGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRP 173
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320
C PS P P++ + P E + + F GGE+A L R+ +YFW D L
Sbjct: 174 CFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGDRL 233
Query: 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR 380
K YKETRN M+G DYS+KFSPWLA G +SPR+IY+EVK YE+ERV+NDST+W++FEL+WR
Sbjct: 234 KDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLIFELLWR 293
Query: 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFM 440
D+FRF++ KYGN LF+ GG + W +DQ FE WR G TGYPL+DANM+EL++TGFM
Sbjct: 294 DFFRFVAQKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFM 353
Query: 441 SNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFS 500
SNRGRQ SFL +++GIDWR GAEWFE+CL+DYD CSN+GNW Y AG+GND R+ RYF+
Sbjct: 354 SNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFN 413
Query: 501 IPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
IPKQ+Q YD +G Y+ +WLP+LK LP ++ + P
Sbjct: 414 IPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQP 446
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/454 (49%), Positives = 300/454 (66%), Gaps = 16/454 (3%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+VW+RNDLRV D+E L A + V+ +YC DPR FGF KTG RA+FL+E
Sbjct: 5 TVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKA-PFGFEKTGPFRARFLLE 63
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
+ADLR++L G +LL+R G PEE+IP+L AV+ E SEEL VER ++ L
Sbjct: 64 SVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQAAL 123
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+ + +S WGTT+ H DD+PF ++P+++T FRK +E +
Sbjct: 124 APLNVPVRS------------FWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAI-NP 170
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKDL 319
+ PP VD G +P + L L SP + ++F GGE++ L R+ EYFW+K L
Sbjct: 171 PLPAPAKLPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFWQKSL 230
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
LK YK+TRN MLG DYS+KFS WLA G +S RYI+E+V++YE +R+ NDSTYW++FEL+W
Sbjct: 231 LKSYKQTRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRIKNDSTYWLIFELLW 290
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFRFI+ K+G+ LF+ G R L+ W +D + FE WR G TG+PL+DANM+EL+ TGF
Sbjct: 291 RDYFRFIAAKHGDRLFYTAGLRGLDIPWKEDWERFELWRTGQTGFPLVDANMRELAATGF 350
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++GI W MGAEWFE+ L+DYD SN+GNW Y AGVGND R R+F
Sbjct: 351 MSNRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARGFRFF 410
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+I KQA++YD +G YV +WLP+L LP R + P
Sbjct: 411 NILKQARDYDPDGAYVKHWLPELAGLPPARVHEP 444
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/446 (47%), Positives = 292/446 (65%), Gaps = 17/446 (3%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+VWFRNDLR +D+E L+A +++ V+C+DPR +TT GF +TG RA+FLIE
Sbjct: 4 ALVWFRNDLRTIDHEPFLRA-STADRCFAVHCIDPRQFETT-ELGFQRTGPFRARFLIEN 61
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DLR L + G L++R G+PE ++ L S AV+ E +EE + V++
Sbjct: 62 LTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCD 121
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
Q +++ + +G T+ H D++PF+ + P+++T FRK IE +C R +
Sbjct: 122 QHGIATH------------VAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPL 169
Query: 263 RIPSSF-GPPPSVVDWGSVPLIEQLELHSPKVSKGM--RFVGGESAALGRVNEYFWKKDL 319
P G P V+ G +P +E L L +P + +F GG++AA R+ EY W +D
Sbjct: 170 EEPIRIHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDR 229
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
L+VYKETRN ML P+ S+KFSPWLA G +SPR I + V+ YE ERV N STYW++FEL+W
Sbjct: 230 LRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEEERVKNKSTYWMIFELLW 289
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RDYFR+IS K+G +LF GG R + W D++LF W+DG TGYPL+DANM+EL TG+
Sbjct: 290 RDYFRWISRKHGATLFRAGGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGY 349
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
MSNRGRQ SFL +++GIDWR GA WFE+ L+DYD SNYGNW Y AGVGND R R+F
Sbjct: 350 MSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARGFRFF 409
Query: 500 SIPKQAQNYDREGEYVAYWLPQLKAL 525
+I KQ+++YD +GEY +WLP+L+ L
Sbjct: 410 NITKQSRDYDSQGEYAKHWLPELRDL 435
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/448 (47%), Positives = 281/448 (62%), Gaps = 19/448 (4%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDP-RHSQTTYHFGFPKTGALRAQFLI 140
A+VWFR+DLRV DN L A ++E V+PVY DP R++++ Y G PKTG RA F
Sbjct: 3 TAVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEY--GPPKTGGHRAVFRR 60
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ +ADLR +L +RG +LL+R G+P ++P LA+ GA AVYAQ + +EE V
Sbjct: 61 QAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASA 120
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
L ++ L+ W T+YH DD+P + + D +T +RK EA TVR
Sbjct: 121 LDDAGIA------------LRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRD 168
Query: 261 CIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKG--MRFVGGESAALGRVNEYFWKKD 318
P + P P + G VP +E L + P + F GGESA RV Y W+ D
Sbjct: 169 PRSAPETV-PTPDGLTPGPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESYIWEGD 227
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L+ YK TRN +LG DYS+KFSPWLA+G +SPR+++ EV+ YE ERVAN+ TYW++FEL
Sbjct: 228 HLREYKTTRNGLLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERVANEDTYWLVFELA 287
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WRD+F+F KYG + F GG R+ W +D+ LFE W DG TG P +DANM+EL+ TG
Sbjct: 288 WRDFFQFQFEKYGATFFKPGGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTG 347
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ SFL +GIDWR GA +FE L+DYD SN+GNW Y AGVGND R DRY
Sbjct: 348 YMSNRGRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVGNDSR-DRY 406
Query: 499 FSIPKQAQNYDREGEYVAYWLPQLKALP 526
F + QA+ YD + EY+ WLP+L ALP
Sbjct: 407 FDVRSQAERYDSDAEYITTWLPELAALP 434
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 206/477 (43%), Positives = 289/477 (60%), Gaps = 39/477 (8%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAW----DSSEM-VLPVYCVDPRHSQTTYHFGFPKTGA 133
G+ ++WFRNDLR+LDN + +A +SS++ V+PVY D + + + G + GA
Sbjct: 2 GRTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKR-GLARFGA 60
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH---AVYAQKETCSEE 190
R +F +EC+ DL+ +L G +LL+R GK ++I L + GA+ + Q E SEE
Sbjct: 61 GRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLT-GANDRTIILTQTEVTSEE 119
Query: 191 LNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSS----LPDVYT 246
++ V + ++ ++ H WG+T+YH+DD+PFD +S LPDV+T
Sbjct: 120 TEMDVAVERATRERARGGAASATMERH------WGSTLYHIDDVPFDVTSGLSDLPDVFT 173
Query: 247 HFRKSIEAKCTVRGCIRIPSS--FG-PPPSVVDWGSVPLIEQLELHSPKVSKG------- 296
FR +E+KC VR I P++ G P SV + +P L S +++
Sbjct: 174 PFRNKVESKCKVRDVIPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKD 233
Query: 297 -------MRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSIS 349
+ F GGES AL RV Y W+ D L Y ETRN MLG DYSTK +PWLA G +S
Sbjct: 234 CLDERSVLDFKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVS 293
Query: 350 PRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ 409
PR++ E++ YE ERV N STYWV+FEL+WRD+F+F +LK+GN +FHL G W +
Sbjct: 294 PRHVVSEIRRYESERVENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRASWKR 353
Query: 410 DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
D+K+ ++W+ G TGYPLIDANM+EL+ TGFMSNRGRQ S+L D GIDWR GA+WFE
Sbjct: 354 DEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEH 413
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
LLDYD SN+GNW AG+ R +R F+I KQ ++YD GEY+ W+ +L +P
Sbjct: 414 HLLDYDTASNWGNWCAAAGM-TGGRINR-FNIAKQTKDYDPAGEYIKTWVKELAEVP 468
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 168/448 (37%), Positives = 239/448 (53%), Gaps = 42/448 (9%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYC---VDP---RHSQTTYHFGFPKTGA 133
K + + WF NDLRV DN L +A + ++ +YC + P R++Q T + G
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQT------QWGE 56
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNV 193
+ +FL + LADL +L G L + P + + L +Y S+E
Sbjct: 57 AKKRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQA 116
Query: 194 ERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIE 253
+ ++ V + Q+ + PQL PF +LP +T FRK +E
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEPQL--------------PFALEALPSTFTQFRKQVE 162
Query: 254 AKCTVRGCIRIPSSFGPP---PSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRV 310
I + + G P P + +PL++ + P S FVGGE A L
Sbjct: 163 T-------ISLSAPMGYPHVLPPIEQGWQLPLMDIVT--EPNHSA---FVGGEQAGLTHC 210
Query: 311 NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDST 370
YF L YKETRN + G DYSTKFSPWLA G++SP+ IY ++ YE ANDST
Sbjct: 211 QNYF-SSLLPSRYKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGANDST 269
Query: 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
YW+ FEL+WR+YF + + +YG LF G + + S + F W+ G T +P+++A
Sbjct: 270 YWIFFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIVNAC 329
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG
Sbjct: 330 MRQLNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVG 389
Query: 491 NDPREDRYFSIPKQAQNYDREGEYVAYW 518
DPR R F++ KQA YD +GE+VA W
Sbjct: 390 ADPRGSRQFNLEKQAHTYDPKGEFVAKW 417
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/449 (36%), Positives = 235/449 (52%), Gaps = 31/449 (6%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTY-HFGFPKTGALRAQFLI 140
+ + FRNDLRV DN AL +A SE ++ +C +P +Q Y H+G P G R FL
Sbjct: 16 LGLFVFRNDLRVEDNLALYEAAQRSETLICCFCFNP--TQNKYGHYGIPAMGKHRFTFLQ 73
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKN 200
+ L LR L RG L++ G + I+ L A++ + + ERL
Sbjct: 74 QSLKQLRTELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQH----QGYYERLQLGL 129
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA---KCT 257
LQQ ++ N T++ ++PF+ + LP+ ++ FRK +E +
Sbjct: 130 LQQRFPFLPFHETPNN----------TLFSEQELPFELADLPETFSQFRKKVEPLSRNFS 179
Query: 258 VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKK 317
V+ +PS P + + EL S F GGE AAL + YF
Sbjct: 180 VQPVNALPSL----PKNISYPGFKAETLNELASDD------FEGGERAALTHLTSYF-SG 228
Query: 318 DLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFEL 377
+ YK+TRN + STKFSPWLA G +S R I +++YE E N+S+YW+ FEL
Sbjct: 229 ESAGTYKQTRNALDDFSSSTKFSPWLAQGCLSVRQIMAALRAYETEFGENESSYWISFEL 288
Query: 378 MWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMT 437
+WR+YF + +LK+G LF G K S + F+ W G T YP+++A MK+L+ T
Sbjct: 289 LWREYFFWYALKHGKRLFAFSGLSGKSPKTSFYSERFQKWCSGNTPYPIVNACMKQLNAT 348
Query: 438 GFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDR 497
G+MSNRGRQ+ S V ++ +DWR GA +FE L+DYD SN+GNW Y AGVG DPR R
Sbjct: 349 GYMSNRGRQLVASCFVHELSLDWRYGAAYFEQQLIDYDVSSNWGNWQYLAGVGADPRGHR 408
Query: 498 YFSIPKQAQNYDREGEYVAYWLPQLKALP 526
F++ KQ + YD + E++ W L P
Sbjct: 409 QFNLEKQTERYDPDNEFIERWAGDLSGQP 437
>sp|Q87JP5|CRYD_VIBPA Cryptochrome DASH OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=cry PE=3 SV=1
Length = 445
Score = 258 bits (659), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 157/440 (35%), Positives = 225/440 (51%), Gaps = 26/440 (5%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKT-GALRAQF 138
K + + WF DLR+ DN L+ A + ++ +YC P + +HF T G R +F
Sbjct: 3 KKIGLYWFTFDLRLHDNSLLVDASSFLDELVCLYC-RPSVTPFLHHFAQEVTLGRARQKF 61
Query: 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
+ L +L L G L P + + + +Y+ S+E ++ ++
Sbjct: 62 IDASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLSVTHLYSDAMAGSDEQSILHKLQ 121
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
+V+ S +++ +PF LP+ +T FRK +E +
Sbjct: 122 DEYPHLVIVQHSV--------------RSLFDESKLPFTLPDLPETFTQFRKCVEG-IDI 166
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKD 318
I PS P P +P L S + F GGE + L YF+
Sbjct: 167 AHPIDAPSRLPPMPKG---AQLP-----TLSSFYFDESALFSGGEWSGLAHCRRYFFSG- 217
Query: 319 LLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378
L YKETRN + G YSTKFSPWLA G +SPR I+ +K YE+ + ANDSTYW+ FEL+
Sbjct: 218 LASSYKETRNGLDGMAYSTKFSPWLALGCVSPRMIHAMLKQYEQTQGANDSTYWIYFELL 277
Query: 379 WRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTG 438
WR+YF + + Y LF GG R S F+ W++G T YP+++A M +L+ TG
Sbjct: 278 WREYFYWYARCYQQRLFRFGGIRNQPPLTSFYAHRFQQWKNGTTPYPIVNACMHQLNHTG 337
Query: 439 FMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRY 498
+MSNRGRQ+ S LV ++G+DWR GA +FET L+DYD SN+GNW Y AGVG DPR R
Sbjct: 338 YMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRGSRQ 397
Query: 499 FSIPKQAQNYDREGEYVAYW 518
F++ KQ Q YD E++ W
Sbjct: 398 FNLEKQTQMYDPNHEFIERW 417
>sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2
SV=2
Length = 447
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 180/325 (55%), Gaps = 31/325 (9%)
Query: 86 WFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLAD 145
WFRNDLRV DNE L A D VLPVYC DPR + GF KTG RAQFLIE +++
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSS-GFDKTGPFRAQFLIESVSE 178
Query: 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVV 205
LRKNL RG NL++R GKPE ++ LAK GA AVYA +E +E+ E + +++
Sbjct: 179 LRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEG 238
Query: 206 LSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIP 265
+ ++K WG+T+YHLDD+PF LP Y F+ ++ K +R I
Sbjct: 239 V------------EVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQ-KLEIRKTIAAL 285
Query: 266 SSFGPPPSV--VDWGSVPLIEQLELH-SPKVSKGMR--FVGGESAALGRVNEYF--WKKD 318
PS V+ G +P + L + +P+ S+ + VGGE+ AL R+ + +
Sbjct: 286 DQLKSLPSRGDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQAR 345
Query: 319 LLKV-YKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE---------RERVAND 368
L K K N + G ++S K SPWLA GSISPR +++E+K R +
Sbjct: 346 LSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDT 405
Query: 369 STYWVLFELMWRDYFRFISLKYGNS 393
W+++EL+WRD+FRFI+ KY ++
Sbjct: 406 GLNWLMYELLWRDFFRFITKKYSSA 430
>sp|Q4I1Q6|CRYD_GIBZE Putative cryptochrome DASH OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=FGSG_08852 PE=3
SV=1
Length = 678
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/518 (30%), Positives = 236/518 (45%), Gaps = 93/518 (17%)
Query: 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSE---MVLPVYCVDPRHSQTT----------YH 125
G + + R DLR DN L S +LP+Y + P +T+ Y
Sbjct: 3 GNKLLVYLLRRDLRATDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYP 62
Query: 126 FG------FPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH- 178
F + G LRA+F EC+ D++KN N G +LIR GK ++++ L KS
Sbjct: 63 LAKSQVGRFWRCGPLRAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLNEDH 122
Query: 179 ----AVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD- 233
V+ +E EEL+ Q ++S + + +W Y +D+
Sbjct: 123 QSIDTVWMTEEPSKEELD---------DQTAVASVCSKEGIGFK----LWHDEKYFIDEK 169
Query: 234 -------------IPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVV-DWGS 279
SLP F I + + RIP + ++ +
Sbjct: 170 TQEPLRERPRPPLPRPQAGSLPS----FPSWIPPQ---QAPFRIPDDYDEFERLLLEPVK 222
Query: 280 VPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKF 339
P+I F GGE+ A R+ + K + Y+ETRN +LG +YSTK
Sbjct: 223 APIISDPPQFPEGAKSAHPFKGGETPAWDRLY-HLIKSGAMTTYQETRNGLLGTEYSTKL 281
Query: 340 SPWLASGSISPRYIYEEV--------KSYERE----RVANDSTYWVLFELMWRDYFRFIS 387
S +LA G+I+ R I+ E+ +SY R + N+ T V FEL+WRDY R +
Sbjct: 282 SAFLAMGTITARSIHAELVKFEDGSEESYSRGFGFGKGENEGTRAVRFELLWRDYMRLCT 341
Query: 388 LKYGNSLFHL----GGPRKLEYKWSQDQK----------------LFESWRDGCTGYPLI 427
K+ LF + G KW D++ + + W G TG L+
Sbjct: 342 FKFRTRLFKIDGFKGASGNYTKKWLTDREEDAEPDQNPTPAQVKDMIDRWIRGTTGMGLV 401
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
DA+ +EL +TG+ SNR RQ S+L + +GIDWR+GAE++E L+DYD SN+GNW Y A
Sbjct: 402 DASQRELQLTGYTSNRARQNVASYLTKSLGIDWRLGAEYYEQSLIDYDTHSNWGNWQYQA 461
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
GNDPR R F+ KQA +YD++G + W+ ++K++
Sbjct: 462 SCGNDPRS-RSFNQVKQAFDYDQDGRFTRTWVNEVKSI 498
>sp|Q7SI68|CRYD_NEUCR Putative cryptochrome DASH, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B22I21.260 PE=3 SV=1
Length = 745
Score = 202 bits (514), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 165/534 (30%), Positives = 241/534 (45%), Gaps = 108/534 (20%)
Query: 82 VAIVWFRNDLRVLDNEAL--LKAWDSSE---MVLPVYCV----------------DPRHS 120
V I R +LR+ DN L +S +LPVY +P +
Sbjct: 6 VVIYAMRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHPA 65
Query: 121 QTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH-- 178
+ G+ + G RA+FL E + DL+ +L + G +LL+R G +++I SL + A
Sbjct: 66 PKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKEC 125
Query: 179 ---AVYAQKETCSEELNVERLVRKNLQQVVLSSQ--SNDKSTNHPQLKLIWGTTMYHLDD 233
AV+ SEE + E+ V + + + ++K H + T + HL+D
Sbjct: 126 QVGAVWMTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDR-----DTGITHLND 180
Query: 234 IPFDHSSLPDVYTHFRKSIEA-KCTVRGCIRIPSSFGPPPSVVDWGSVP----------- 281
LPDV+T +RK IE + R + +P G P+ D +P
Sbjct: 181 -------LPDVFTTYRKQIEPLREKARKTLPVPEK-GALPAYPDIDMIPSQQPPFNIPGT 232
Query: 282 --------------LIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETR 327
++ L K F GGE++A R++ + K YK++R
Sbjct: 233 CEELVDAVVRPVKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGM-KSYKDSR 291
Query: 328 NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVA------------NDSTYWVLF 375
N +LGPD+STK S +LA G ++ R I+ + +YE N T V
Sbjct: 292 NGLLGPDFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRM 351
Query: 376 ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRD---------------- 419
EL+WRDY R KYG+ LF + G + + K + WR
Sbjct: 352 ELLWRDYMRLCHQKYGDKLFRVEGFNGKHTDYEGEDKKY-GWRTANTSIALPGQEPTPEK 410
Query: 420 ----------GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFET 469
G TG LIDA+ +EL TG+ SNR RQ SFL + + IDWR GAEW+E
Sbjct: 411 VSEILARFNAGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEM 470
Query: 470 CLLDYDPCSNYGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQL 522
L+DYD SN+ NW Y AGVGNDPR R F+ KQA +YD++G YV W+P++
Sbjct: 471 LLVDYDVSSNWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEV 524
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 134/464 (28%), Positives = 222/464 (47%), Gaps = 61/464 (13%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ ++W R DLR+ D+ AL KA + ++ V+C+D + Q R +L+
Sbjct: 18 LILLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAE------DMAPARVAYLLG 71
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CL L+ + G LL+ P +++P LA + GAH V +T + V + L
Sbjct: 72 CLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQAL 131
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
++ L+ + W M+H ++ S VYT F K+
Sbjct: 132 RERGLAIATE------------WDQLMHHPGEVLTQAGSPYTVYTPFWKNWS-------- 171
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQLELHS------PKVS-------KGMRFVGGESAALG 308
++P + P P+ D + E+ +L P+++ + + GE AA
Sbjct: 172 -QLPKT-SPVPTPKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQ 229
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEE-VKSYERERV-- 365
R++ + L+ Y++ RN D +++ S L G ISPR +++ ++++E+ R
Sbjct: 230 RLDWFV--AHGLEEYQQNRN-FPALDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEE 286
Query: 366 ANDSTYWVLFELMWRDYFR-----FISLKYG--NSLFHLGGPRKLEYKWSQDQKLFESWR 418
A S EL WR++++ F +L G S F E+ W ++Q F++W
Sbjct: 287 ARASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQ-------EFPWEENQDHFQAWC 339
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCS 478
+G TGYP+IDA M +L+ TG+M NR R I SFL++D+ ++W+ G +F L D D +
Sbjct: 340 EGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAA 399
Query: 479 NYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL 522
N G W + A G DP+ R F+ QAQ +D EGEY+ WLPQL
Sbjct: 400 NNGGWQWSASSGMDPKPLRIFNPHTQAQKFDPEGEYIRTWLPQL 443
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 134/486 (27%), Positives = 209/486 (43%), Gaps = 74/486 (15%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+ W R DLR+ DN L A S ++ ++C+DP+ Q+ R +L CL
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSA------DMAPARVAYLQGCL 59
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQ 203
+L++ G LL+ G P+ +IP LA+ A AVY + ++E R Q
Sbjct: 60 QELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQ-------DIEPYGRDRDGQ 112
Query: 204 VVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIR 263
V + ++ +W ++ D I + VY F K+ +A+
Sbjct: 113 VAAALKTAGIRAVQ-----LWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPK------ 161
Query: 264 IPSSFGPPPSVVDWGSVPLIEQLELHSPKV--------------SKGMRFVGGESAALGR 309
P+ P +VD EQL +P + G GE+AA+ R
Sbjct: 162 -PTPVATPTELVDLSP----EQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIAR 216
Query: 310 VNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPR---YIYEEVKSYERERVA 366
+ E+ + Y RN ++ SP L G+I R + R A
Sbjct: 217 LQEFC--DRAIADYDPQRN-FPAEAGTSGLSPALKFGAIGIRQAWRAASAAHALSRSDEA 273
Query: 367 NDSTYWVLFELMWRDYFRFISLKYGNSLFHL----GGP-RKL--EYKWSQDQKLFESWRD 419
+S EL WR++ Y ++L+H GP R L ++ W + LF +W
Sbjct: 274 RNSIRVWQQELAWREF-------YQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQ 326
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
TGYP++DA M++L+ TG+M NR I SFL +D+ IDWR G ++F L+D D +N
Sbjct: 327 AQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAAN 386
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKAL-----------PKE 528
G W + A G DP+ R F+ QA+ +D Y+ WLP+L+ + P
Sbjct: 387 NGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIG 446
Query: 529 RRNFPG 534
RR +P
Sbjct: 447 RRGYPA 452
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 128/443 (28%), Positives = 205/443 (46%), Gaps = 37/443 (8%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
VA+V F +DLR+ DN L A ++ V+P++ D + GF L FL +
Sbjct: 3 VAVVLFTSDLRLHDNPVLRAALRDADEVVPLFVRD----DAVHRAGFDAPNPL--AFLAD 56
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
CLA L L +RG L++R G+ + +A+ GA V+ E+ +R+ L
Sbjct: 57 CLAALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREAL 116
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGC 261
+D T + +P V+T + + EA+ VRG
Sbjct: 117 ADSGRELHVHDAVV----------TALAPGRVVPTGGKDHFAVFTPYFRRWEAEG-VRGT 165
Query: 262 IRIPSSFGPPPSVVDWGSVPLIEQ--LELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319
P + P V S PL ++ +E SP +++G GE A GR W
Sbjct: 166 QTAPRTVRVPDGVA---SDPLPDRDCVENLSPGLARG-----GEEA--GRKLVTSWLNGP 215
Query: 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMW 379
+ Y++ +++ G D +++ SP L G++S E+ RE+ +V +L W
Sbjct: 216 MADYEDGHDDLAG-DATSRLSPHLHFGTVSA----AELVHRAREKGGLGGEAFVR-QLAW 269
Query: 380 RDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGF 439
RD+ + ++ + PR +W D +W+ G TGYPL+DA M++L+ G+
Sbjct: 270 RDFHHQVLADRPDASWSDYRPR--HDRWRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGW 327
Query: 440 MSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYF 499
M NR R +A SFL + + +DWR GA F L+D D +N NW + AG G D R +R
Sbjct: 328 MHNRARMLAASFLTKTLYVDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVL 387
Query: 500 SIPKQAQNYDREGEYVAYWLPQL 522
+ Q + +D G+YV W+P+L
Sbjct: 388 NPVIQGKRFDARGDYVRGWVPEL 410
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 131/462 (28%), Positives = 212/462 (45%), Gaps = 33/462 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT---TYHFGFPKTGALRAQFL 139
+++WFR LRV DN AL A SE + PV+ +DP + ++ + G + G R +FL
Sbjct: 26 SLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFL 85
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
+E L DL +L G LL+ G+P E++ C +E V+RL +
Sbjct: 86 LESLKDLDSSLKKLGSRLLVFKGEPGEVL----------------VRCLQEWKVKRLCFE 129
Query: 200 N-----LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRK-SIE 253
Q + + + ST + T I + P Y F K + E
Sbjct: 130 YDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGE 189
Query: 254 AKCTVRGCIRIPSSFGPPPSVVDWG--SVPLIEQLELHSPKVSKGMRFVGGESAALGRVN 311
C + SS P + + G VP +E+L + + F GGES AL R+
Sbjct: 190 PSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLT 249
Query: 312 EYFWKKDLLKVYKETRNE---MLGPDYSTKFSPWLASGSISPRYIYEEVKS-YERERVAN 367
+ K + +++ + + L P +T SP+L G +S RY Y+ +++ Y+ +
Sbjct: 250 KSISDKAWVANFEKPKGDPSAFLKPA-TTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHT 308
Query: 368 DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLI 427
+L +L+WR++F + N G + W++D + +WRDG TGYP I
Sbjct: 309 SPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWI 368
Query: 428 DANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
DA M +L G+M + R FL R D+ I W G + FE L+D D N GNW +
Sbjct: 369 DAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWL 428
Query: 487 AGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
+ + +R +S + YD +G+Y+ ++LP LK +PK+
Sbjct: 429 SCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQ 470
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2
Length = 473
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/454 (27%), Positives = 203/454 (44%), Gaps = 41/454 (9%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A D+S VL +Y P +Q H P+ A F+
Sbjct: 5 LVWFRRDLRLQDNLALAAACRDASARVLALYISTP--AQWQAHDMAPRQAA----FISAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVR 198
L L+ L +G+ LL E + ++ + ++ + E + V
Sbjct: 59 LNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVE 118
Query: 199 KNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEA-KCT 257
K L V+ +D P + MY + PF ++ L + + A K
Sbjct: 119 KTLPSVICEG-FDDSVILAPGAVMTGNHEMYKV-FTPFKNAWLKRLKEDIPPCVPAPKIR 176
Query: 258 VRGCIR---IPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
V G + P S P D P+ E V +R + A +EY
Sbjct: 177 VSGALSTPLTPVSLNYPQQAFDAALFPVEEN------AVIAQLRQFCAQGA-----DEYA 225
Query: 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVL 374
++D V D +++ S LA+G +SPR + + + + + L
Sbjct: 226 LRRDFPAV-----------DGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVWL 274
Query: 375 FELMWRDYFRFISLKYGNSLFHLGGPRKLE-YKWSQDQKLFESWRDGCTGYPLIDANMKE 433
EL+WR+++R + Y H R + W ++ F++W+ G TGYP++DA M++
Sbjct: 275 NELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQ 334
Query: 434 LSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 493
L+ TG+M NR R I SFLV+D+ IDWR+G +F + L+D D +N G W + A G D
Sbjct: 335 LNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDA 394
Query: 494 RED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
R F+ Q + +DR+GE++ WLP L+ +P
Sbjct: 395 APYFRIFNPTTQGERFDRDGEFIRQWLPALRDIP 428
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 133/457 (29%), Positives = 218/457 (47%), Gaps = 48/457 (10%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
+VWFR DLR+ DN AL A +SS VL +Y PR Q H P+ +A+ +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPR--QWATHNMSPR----QAELINAQ 58
Query: 143 LADLRKNLMNRGLNLLIRH-----GKPEEIIPSLAKSFGAHAVYA-QKETCSEELNVERL 196
L L+ L +G+ LL R E + A++ H Y Q E +VE
Sbjct: 59 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVE-- 116
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKC 256
V + L+ VV + D S P ++ G + PF ++ L R+ + +C
Sbjct: 117 VERALRNVV--CEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL----KRLREGM-PEC 169
Query: 257 TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS-KGMRFVGGESAALGRVNEYFW 315
+R S P PS+ L+ P+ S F E AA+ ++ ++
Sbjct: 170 VAAPKVRSSGSIEPSPSIT------------LNYPRQSFDTAHFPVEEKAAIAQLRQFC- 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLF 375
++ Y++ R+ + +++ S LA+G +SPR + + + + + + L
Sbjct: 217 -QNGAGEYEQQRD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLN 274
Query: 376 ELMWRDYFRFISLKYGNSL-----FHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
EL+WR+++R + + Y SL F R +W + ++W++G TGYP++DA
Sbjct: 275 ELIWREFYRHL-ITYHPSLCKHRPFIAWTDR---VQWQSNPAHLQAWQEGKTGYPIVDAA 330
Query: 431 MKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 490
M++L+ TG+M NR R I SFLV+D+ IDWR G +F + L+D D +N G W + A G
Sbjct: 331 MRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTG 390
Query: 491 NDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D R F+ Q + +D EGE++ WLP+L+ +P
Sbjct: 391 TDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVP 427
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 152 bits (383), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 207/460 (45%), Gaps = 41/460 (8%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMV---------LPVYCVDPRHSQTTYHFGFPKTGAL 134
+ W R DLR DN L A V V+C D + H P
Sbjct: 3 LFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFD---DEVLAHAAPP----- 54
Query: 135 RAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVE 194
R F+++ LA LR+ + G +L++RHG P ++P++A A V + + +
Sbjct: 55 RVAFMLDALAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRVVWNHDYSGLATDRD 114
Query: 195 RLVRKNLQQV-VLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHF-RKSI 252
VR L V +Q +D + P G + D P+ VYT+F RK
Sbjct: 115 AGVRDALDAAGVAHAQFHDAVHHRP------GEIRTNAGD-PYS------VYTYFWRKWQ 161
Query: 253 EAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
+ + P+ ++ D +P +++L P+ + G +AA ++
Sbjct: 162 DREKNPPAPEPEPADLAADTALADTSPLPSVQELGFAEPEAAVPD---AGTAAARSLLDA 218
Query: 313 YFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYW 372
+ D+ + E R + + +++ SP L G+I R +YE ++ + + +D
Sbjct: 219 FRESGDIYRY--EDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDEREN 276
Query: 373 V---LFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDA 429
V + +L WR+++ + N + + +W D ++W+DG TGYP++DA
Sbjct: 277 VAAFIGQLAWREFYAQVLYFNQNVVSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDA 336
Query: 430 NMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M++L +M NR R I +FL +D+ +DWR G +WF L D+D ++ G W + A
Sbjct: 337 GMRQLRAEAYMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAAST 396
Query: 490 GNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G D + R F+ Q + YD + +Y+ ++P+L+ +P +
Sbjct: 397 GTDAQPYFRVFNPMTQGERYDPDADYITEFVPELRDVPAD 436
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 214/487 (43%), Gaps = 60/487 (12%)
Query: 78 NGKGVAIVWFRNDLRVLDNEALLKAWDSSEMV----LPVYCVDPRHSQTTYHFGFPKTGA 133
N + VWFR D R+ D+ AL A ++ E L + +DP+ +
Sbjct: 3 NSDSLKAVWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDPKTASVE---------P 53
Query: 134 LRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSF-GAHAVYAQKETCSEELN 192
+ + + + ++ L G +L I G E + L ++F AVYA + +
Sbjct: 54 VHHDYFFQTVMQFKQMLKTNGGDLYIITGTIEGALSKLLQAFPEIDAVYANDDRVGDGR- 112
Query: 193 VERLVRKNLQQVVLSSQS------NDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYT 246
+R + L+ QS D P L T Y V+T
Sbjct: 113 ----LRDEAAEHFLAKQSIPFYTFEDAYLTEPDQVLKKDGTPYK-------------VFT 155
Query: 247 HFRKS-IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMR--FVGGE 303
+ K+ + + I+ G V G+ P E L + + K GE
Sbjct: 156 PYYKAWAKERKRTPAVIKRDVLLGS----VHKGTAPDREAETLFNNLIKKCSYDWSAIGE 211
Query: 304 SAALGRVNEYFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE 361
A+ R+ + K L YK R+ + G +++ SP++ +G++S R IY + + E
Sbjct: 212 EHAIKRLQMF--TKKRLSGYKANRDFPSITG---TSRLSPYIKTGAVSSRSIYYHILNAE 266
Query: 362 RERVANDSTYWVLFELMWRDYFRFISLKYGNSLFH--LGGPRKLEYKWSQDQKLFESWRD 419
+ + ++ L EL WRD++R + + + G R+L WS DQ SW+
Sbjct: 267 ADSYSAET---FLKELAWRDFYRMVHFYEPDCKDREIMEGYREL--NWSHDQDDLTSWKR 321
Query: 420 GCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
G TG+P++DA M++L G+M NR R I SFL +D+ IDWR+G +FE L+DYDP SN
Sbjct: 322 GETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSN 381
Query: 480 YGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYI 538
G W + A VG D R F+ Q++ +D G Y+ ++P+L +P + P
Sbjct: 382 IGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKMSE 441
Query: 539 EQIVSLK 545
E+ V K
Sbjct: 442 EEQVKYK 448
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 129/478 (26%), Positives = 220/478 (46%), Gaps = 58/478 (12%)
Query: 82 VAIVWFRNDLRVLDNEAL-LKAWDSSEMVLPVYC---VDPRHSQTTYHFGFPKTGALRAQ 137
+ WF+ DLR+ DN +L L + + E +P+ C + P + H P +R
Sbjct: 136 AVVHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEA--HLRAP----IRVD 189
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPS----LAKSFGAHAVYAQKETCSEELNV 193
F++ L L+ +L + G+ L + + + +P+ L KS+GA ++ C+ E V
Sbjct: 190 FMLRTLEVLKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLF-----CAMEYEV 244
Query: 194 ERLVRK-NLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTH-FRKS 251
+ L R+ L +++ + +K ++ T + + VY+ FR
Sbjct: 245 DELRREAKLVKLLAEGEKGEKMA----ADVVHDTCVVMPGALQSGSGGQYAVYSPWFRAW 300
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHS-PKVSKGMRF----------- 299
I+ C+ I GP P G+ E L S P+ +G R
Sbjct: 301 IKHIEENPECLEIYEKPGPNPP----GTKEKHENLFACSIPEAPEGKRLRDDEKARYHSL 356
Query: 300 -VGGESAALGRVNEYFWKKDLLKVYKETRN--EMLGPDYSTKFSPWLASGSISPRYIYEE 356
GE AL R+ ++ + + Y E RN M G ++ S ASG++S R
Sbjct: 357 WPAGEHEALKRLEKFC--DEAIGKYAERRNIPAMQG---TSNLSVHFASGTLSARTAIRT 411
Query: 357 VKSYERERVANDSTYWV---LFELMWRDYFRFISLKYGNSLFHLGGPRKLEY---KWSQD 410
+ + N + + E+ WRD+++ + + + + P K Y +WS +
Sbjct: 412 ARDRNNTKKLNGGNEGIQRWISEVAWRDFYKHVLVHW--PYVCMNKPFKPTYSNIEWSYN 469
Query: 411 QKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETC 470
F +W G TG+P+IDA M+++ TG+M NR R I SFL +D+ +DWRMG +F
Sbjct: 470 VDHFHAWTQGRTGFPIIDAAMRQVLSTGYMHNRLRMIVASFLAKDLLVDWRMGERYFMEH 529
Query: 471 LLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKALPK 527
L+D D SN G W + A VG DP+ R F+ Q++ +D +G+Y+ W+ +L+ LP+
Sbjct: 530 LIDGDFASNNGGWGFAASVGVDPQPYFRVFNPLLQSEKFDPDGDYIRKWVEELRDLPE 587
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/460 (26%), Positives = 207/460 (45%), Gaps = 53/460 (11%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
+VWFR DLR DN AL A +S + V +Y P Q H P ++A + L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATP--EQWHQHHLAP----IQADLIWRRL 56
Query: 144 ADLRKNLMNRGLNLLIRH----GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRK 199
A+L++ L + L + + LAK+ A V A ++ +E ++L ++
Sbjct: 57 AELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQ 116
Query: 200 NL-QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTV 258
L +Q ++ S +DK P + V+T F+++
Sbjct: 117 LLSEQGIIWSAFDDKCVLPP-------------GSVRTKQGEFFKVFTPFKRAWL----- 158
Query: 259 RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAA---LGRVNEYFW 315
+ P G V W + +L H + R AA R +
Sbjct: 159 --TLFQPPVIGKNRPVALWNVPSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDF 216
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRY----IYEEVKSYERERVANDSTY 371
++ ++ Y + R+ + ++ SP+LA G +S R +Y E E ++ +
Sbjct: 217 CRERVQDYHQARD-FPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGE---LSEGAQV 272
Query: 372 WVLFELMWRDYFRFI-----SLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPL 426
W L EL+WR++++ + +L G +LE W D + F+ W +G TGYP+
Sbjct: 273 W-LSELIWREFYQHLVAIEPNLSKSRDFVEWGA--RLE--WWNDNEKFQLWCEGKTGYPI 327
Query: 427 IDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYG 486
+DA M++L+ TG+M NR R I SFL +D+ IDWR G +F + L+D D +N G W +
Sbjct: 328 VDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWC 387
Query: 487 AGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQLKAL 525
A G D + R F+ Q + +D G+++ W+P+L+++
Sbjct: 388 ASTGCDGQPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSV 427
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1
Length = 483
Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 126/489 (25%), Positives = 220/489 (44%), Gaps = 95/489 (19%)
Query: 84 IVWFRNDLRVLDNEALLKAW-DSSEMVLPVYCVDPR--HSQTTYHFGFPKTGALRAQFLI 140
++WFRNDLRV DN AL +A + ++ V+ ++ P+ H+Q+ + F+
Sbjct: 5 LIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPKQWHNQSV--------SKKKISFMY 56
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSL------AKSFGAHAVYAQKETCSEELNVE 194
L L+K L+ LN+++ + + + + S+ K + ++ E E +
Sbjct: 57 YHLISLQKELL--KLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRD 114
Query: 195 RLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPD-------VYTH 247
LV+K L Q L+ G +H D++ F + + + V+T
Sbjct: 115 YLVKKKLSQKGF---------------LVKG---FH-DNLLFSNRQIRNQKNETYKVFTF 155
Query: 248 FRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVG-GESAA 306
F+K + IP F P PS + + L + ++ F GE A
Sbjct: 156 FKKKVIQNLHNN----IPQCF-PVPSKRKSDRDIFLTSISLKNVNLNFNKNFFPVGEKEA 210
Query: 307 LGRV--------NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK 358
+ R+ N+YF K+D + D ++ SP+L++G IS RY + +
Sbjct: 211 INRLKNFCIYKFNDYFLKRDYPFL-----------DATSMLSPYLSAGIISSRYCLKVLL 259
Query: 359 SYERERVANDSTYWVLF-ELMWRDYFRFISLKYGNSLFHL--GGPR----------KLEY 405
+ N F +++WR+++ +HL G P+ + E
Sbjct: 260 KTKNSLPLNVLLTSPWFDQILWREFY-----------YHLLIGFPKISRSESLVTWEKEI 308
Query: 406 KWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAE 465
W + K F +W++G TG+P+IDA M++L+ G+M NR R I SFLV+++ I+WR G E
Sbjct: 309 HWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNLLINWREGEE 368
Query: 466 WFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKA 524
F + L+D D N G W + A VG D R F+ Q++ +D G ++ ++P+LK
Sbjct: 369 HFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFIKKFIPELKN 428
Query: 525 LPKERRNFP 533
+P + P
Sbjct: 429 VPNHHIHQP 437
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 138/483 (28%), Positives = 205/483 (42%), Gaps = 74/483 (15%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
IVWFR DLR+ DN AL A V PV+ P Y G ++ +
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGS-VFPVFIWCPEEEGQFY------PGRASRWWMKQS 59
Query: 143 LADLRKNLMNRGLNL-LIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
LA LR++L G L LI+ I ++ GA V L + V++ L
Sbjct: 60 LAHLRQSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKL 119
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG- 260
+ +S QS + D P YT R ++ + G
Sbjct: 120 VERGISVQSYNG-----------------------DLCMSPGRYTVKRANLLLVLILTGK 156
Query: 261 -CI--RIPSSFGPPPSVVDWGSVPL----------IEQLELH--SPKVSKGM---RFVGG 302
C+ + S PPP W +PL +E+L L + K S + + G
Sbjct: 157 KCLDMSVESVVLPPP----WRLMPLSAAETVWACSVEELGLENEAEKPSNALLTRAWSPG 212
Query: 303 ESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK---- 358
S A +NE+ K+ L Y + +++G + ++ SP+L G IS R +++ +
Sbjct: 213 WSNADKILNEFIEKQ--LIDYAKNSKKVVG-NSTSLLSPYLHFGEISVRRVFQCARMKQI 269
Query: 359 --SYERERVANDSTYWVLFELMWRDYFRFISLKY-----GNSLFHLGGPRKLEYKWSQDQ 411
+ ++ +S L + RDY R I + + L HL + W D
Sbjct: 270 IWARDKNGEGEESADLFLRGIGLRDYSRIICFNFPFTHEQSLLSHLRF-----FPWDADV 324
Query: 412 KLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCL 471
F++WR G TGYPL+DA M+EL TG+M NR R I SF V+ + + W+ G ++F L
Sbjct: 325 DKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTL 384
Query: 472 LDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERR 530
LD D + W Y +G D E DR + Q YD EGEY+ WLP+L LP E
Sbjct: 385 LDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGAKYDPEGEYIRQWLPELARLPTEWI 444
Query: 531 NFP 533
+ P
Sbjct: 445 HHP 447
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 195/469 (41%), Gaps = 54/469 (11%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+ WFR LR+ DN AL + ++ + VY +DP + G G R +FL++C
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP------WFAGSSNVGINRWRFLLQC 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DL NL L + G+P ++ P L K + + + + SE ER
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYD--SEPFGKER------- 109
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIEA------- 254
+ + + ++ + T+Y LD I + P Y F+ I
Sbjct: 110 DAAIKKLATEAGV---EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIP 166
Query: 255 ----------KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGES 304
KCT +G VP +E+L + +S + + GGE+
Sbjct: 167 VETITSEVIEKCTTPLSDDHDEKYG----------VPSLEELGFDTDGLSSAV-WPGGET 215
Query: 305 AALGRVNEYFWKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE 361
AL R+ + +K + ++ R N +L T SP+L G +S R Y ++
Sbjct: 216 EALTRLERHLERKAWVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTDLY 273
Query: 362 RERVANDSTYWVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDG 420
++ N S L+ +L+WR++F + G P ++ W ++ + W +G
Sbjct: 274 KKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEG 333
Query: 421 CTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSN 479
TG+P IDA M +L G++ + R FL R D+ I W G + FE LLD D N
Sbjct: 334 RTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSIN 393
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G+W + + + + + D G+Y+ +LP L+ P +
Sbjct: 394 AGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAK 442
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 195/469 (41%), Gaps = 54/469 (11%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+ WFR LR+ DN AL + ++ + VY +DP + G G R +FL++C
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP------WFAGSSNVGINRWRFLLQC 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DL NL L + G+P ++ P L K + + + + SE ER
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYD--SEPFGKER------- 109
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIEA------- 254
+ + + ++ + T+Y LD I + P Y F+ I
Sbjct: 110 DAAIKKLATEAGV---EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIP 166
Query: 255 ----------KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGES 304
KCT +G VP +E+L + +S + + GGE+
Sbjct: 167 VETITSEVIEKCTTPLSDDHDEKYG----------VPSLEELGFDTDGLSSAV-WPGGET 215
Query: 305 AALGRVNEYFWKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE 361
AL R+ + +K + ++ R N +L T SP+L G +S R Y ++
Sbjct: 216 EALTRLERHLERKAWVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTDLY 273
Query: 362 RERVANDSTYWVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDG 420
++ N S L+ +L+WR++F + G P ++ W ++ + W +G
Sbjct: 274 KKVKRNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEG 333
Query: 421 CTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSN 479
TG+P IDA M +L G++ + R FL R D+ I W G + FE LLD D N
Sbjct: 334 RTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSIN 393
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G+W + + + + + D G+Y+ +LP L+ P +
Sbjct: 394 AGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAK 442
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 195/469 (41%), Gaps = 54/469 (11%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+ WFR LR+ DN AL + ++ + VY +DP + G G R +FL++C
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP------WFAGSSNVGINRWRFLLQC 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DL NL L + G+P ++ P L K + + + + SE ER
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYD--SEPFGKER------- 109
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIE-------- 253
+ + + ++ + T+Y LD I + P Y F+ +
Sbjct: 110 DAAIKKLATEAGV---EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMP 166
Query: 254 ---------AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGES 304
KCT +G VP +E+L + +S + + GGE+
Sbjct: 167 ADTITSDVIGKCTTPLSDDHDEKYG----------VPSLEELGFDTDGLSSAV-WPGGET 215
Query: 305 AALGRVNEYFWKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE 361
AL R+ + +K + ++ R N +L T SP+L G +S R Y ++
Sbjct: 216 EALTRLERHLERKAWVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTDLY 273
Query: 362 RERVANDSTYWVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDG 420
++ N S L+ +L+WR++F + G P ++ W ++ + W +G
Sbjct: 274 KKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEG 333
Query: 421 CTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSN 479
TG+P IDA M +L G++ + R FL R D+ I W G + FE LLD D N
Sbjct: 334 RTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSIN 393
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G+W + + + + + D G+Y+ +LP L+ P +
Sbjct: 394 AGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAK 442
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 119/471 (25%), Positives = 199/471 (42%), Gaps = 58/471 (12%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+ WFR LR+ DN AL + ++ V VY +DP + G G R +FL++C
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDP------WFAGSSNVGINRWRFLLQC 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRKN 200
L DL NL L + G+P ++ P L K + + + + SE ER ++K
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYD--SEPFGKERDAAIKK- 115
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIE------ 253
L+S++ ++ + T+Y LD I + P Y F+ I
Sbjct: 116 -----LASEAG------VEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLE 164
Query: 254 -----------AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGG 302
KCT +G VP +E+L + + + + GG
Sbjct: 165 MPVETITPEVMKKCTTPVSDDHDEKYG----------VPSLEELGFDTDGLPSAV-WPGG 213
Query: 303 ESAALGRVNEYFWKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
E+ AL R+ + +K + ++ R N +L T SP+L G +S R Y ++
Sbjct: 214 ETEALTRLERHLERKAWVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTD 271
Query: 360 YERERVANDSTYWVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWR 418
++ N S L+ +L+WR++F + G P ++ W ++ + W
Sbjct: 272 LYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWA 331
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPC 477
+G TG+P IDA M +L G++ + R FL R D+ I W G + FE LLD D
Sbjct: 332 EGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWS 391
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
N G+W + + + + + D G+Y+ +LP L+ P +
Sbjct: 392 VNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAK 442
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/459 (25%), Positives = 195/459 (42%), Gaps = 34/459 (7%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+ WFR LR+ DN AL + ++ + VY +DP + G G R +FL++C
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP------WFAGSSNVGINRWRFLLQC 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DL NL L + G+P ++ P L K + + + + SE ER
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYD--SEPFGKER------- 109
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFR------KSIEAK 255
+ + + ++ + T+Y LD I + P Y F+ + +E
Sbjct: 110 DAAIKKLATEAGV---EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMP 166
Query: 256 CTVRGCIRIPSSFGPPPSVVDWG-SVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314
I P D VP +E+L + +S + + GGE+ AL R+ +
Sbjct: 167 ADTITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAV-WPGGETEALTRLERHL 225
Query: 315 WKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTY 371
+K + ++ R N +L T SP+L G +S R Y ++ ++ N S
Sbjct: 226 ERKAWVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPP 283
Query: 372 WVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDAN 430
L+ +L+WR++F + G P ++ W ++ + W +G TG+P IDA
Sbjct: 284 LSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAI 343
Query: 431 MKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 489
M +L G++ + R FL R D+ I W G + FE LLD D N G+W + +
Sbjct: 344 MTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCS 403
Query: 490 GNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
+ + + D G+Y+ +LP L+ P +
Sbjct: 404 SFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAK 442
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 196/469 (41%), Gaps = 54/469 (11%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+ WFR LR+ DN AL + ++ + VY +DP + G G R +FL++C
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDP------WFAGSSNVGINRWRFLLQC 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
L DL NL LL+ G+P ++ P L K + + + + SE ER
Sbjct: 59 LEDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEYD--SEPFGKER------- 109
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIEA------- 254
+ + + ++ + T+Y LD I + P Y F+ I
Sbjct: 110 DAAIKKLATEAGV---EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIP 166
Query: 255 ----------KCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGES 304
KCT +G VP +E+L + +S + + GGE+
Sbjct: 167 VETITSEVIEKCTTPLSDDHDEKYG----------VPSLEELGFDTDGLSSAV-WPGGET 215
Query: 305 AALGRVNEYFWKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE 361
AL R+ + ++ + ++ R N +L T SP+L G +S R Y ++
Sbjct: 216 EALTRLERHLERRAWVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTDLY 273
Query: 362 RERVANDSTYWVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDG 420
++ N S L+ +L+WR++F + G P ++ W ++ + W +G
Sbjct: 274 KKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEG 333
Query: 421 CTGYPLIDANMKELSMTGFMSNRGRQ-IACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479
TG+P IDA M +L G++ + R +AC D+ I W G + FE LLD D N
Sbjct: 334 RTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADWSIN 393
Query: 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
G+W + + + + + D G+Y+ +LP L+ P +
Sbjct: 394 AGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAK 442
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 119/471 (25%), Positives = 199/471 (42%), Gaps = 58/471 (12%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+ WFR LR+ DN AL + ++ V VY +DP + G G R +FL++C
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDP------WFAGSSNVGINRWRFLLQC 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRKN 200
L DL NL L + G+P ++ P L K + + + + SE ER ++K
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYD--SEPFGKERDAAIKK- 115
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIE------ 253
L+S++ ++ + T+Y LD I + P Y F+ I
Sbjct: 116 -----LASEAG------VEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLE 164
Query: 254 -----------AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGG 302
KCT +G VP +E+L + + + + GG
Sbjct: 165 MPVETITPEVMQKCTTPVSDDHDEKYG----------VPSLEELGFDTDGLPSAV-WPGG 213
Query: 303 ESAALGRVNEYFWKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
E+ AL R+ + +K + ++ R N +L T SP+L G +S R Y ++
Sbjct: 214 ETEALTRLERHLERKAWVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTD 271
Query: 360 YERERVANDSTYWVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWR 418
++ N S L+ +L+WR++F + G P ++ W ++ + W
Sbjct: 272 LYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWA 331
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPC 477
+G TG+P IDA M +L G++ + R FL R D+ I W G + FE LLD D
Sbjct: 332 EGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWS 391
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
N G+W + + + + + D G+Y+ +LP L+ P +
Sbjct: 392 VNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAK 442
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 139/479 (29%), Positives = 209/479 (43%), Gaps = 67/479 (13%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLR+ DN AL A V PV+ P Y G ++ + L
Sbjct: 8 IVWFRRDLRIEDNPALAAAAHEGS-VFPVFIWCPEEEGQFY------PGRASRWWMKQSL 60
Query: 144 ADLRKNLMNRGLNL-LIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202
A L ++L G +L LI+ I + GA V L + V++ L
Sbjct: 61 AHLSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCI 262
+ +S QS + G +Y +I + P +T F S KC +
Sbjct: 121 ERGISVQSYN------------GDLLYEPWEI-YCEKGKP--FTSF-NSYWKKCLD---M 161
Query: 263 RIPSSFGPPPSVVDWGSVPL-----------IEQLELH--SPKVSKGM---RFVGGESAA 306
I S PPP W +P+ IE+L L + K S + + G S A
Sbjct: 162 SIESVMLPPP----WRLMPITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNA 217
Query: 307 LGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVK------SY 360
+NE+ K+ L Y + +++G + ++ SP+L G IS R++++ + +
Sbjct: 218 DKLLNEFIEKQ--LIDYAKNSKKVVG-NSTSLLSPYLHFGEISVRHVFQCARMKQIIWAR 274
Query: 361 ERERVANDSTYWVLFELMWRDYFRFISLKY-----GNSLFHLGGPRKLEYKWSQDQKLFE 415
++ +S L + R+Y R+I + + L HL + W D F+
Sbjct: 275 DKNSEGEESADLFLRGIGLREYSRYICFNFPFTHEQSLLSHLRF-----FPWDADVDKFK 329
Query: 416 SWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYD 475
+WR G TGYPL+DA M+EL TG+M NR R I SF V+ + + W+ G ++F LLD D
Sbjct: 330 AWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDAD 389
Query: 476 PCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
+ W Y +G D E DR + Q YD EGEY+ WLP+L LP E + P
Sbjct: 390 LECDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHP 448
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/459 (24%), Positives = 198/459 (43%), Gaps = 38/459 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++ WFR LR+ DN ALL A + V VY +DP + ++ G R +FL++
Sbjct: 24 SVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASS------SVGINRWRFLLQS 77
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRKN 200
L DL +L L + G+P ++ P L K +G + + + SE ER + K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYD--SEPFGKERDAAIMKM 135
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIEAKCTVR 259
++ + + + T +Y LD I + P Y F+ I +
Sbjct: 136 AKEAGVEVVTENSHT------------LYDLDRIIELNGQKPPLTYKRFQAIISRMELPK 183
Query: 260 GCIRIPSSFGPPPSVVDWG-------SVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
+ + +S + VP +E+L + + + + GGE+ AL R+++
Sbjct: 184 KPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAV-WQGGETEALARLDK 242
Query: 313 YFWKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ +K + Y+ R N +L T SP+L G +S R Y + ++ N +
Sbjct: 243 HLERKAWVANYERPRMNANSLLA--SPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNST 300
Query: 370 TYWVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
LF +L+WR++F + G P ++ W ++ + W +G TG+P ID
Sbjct: 301 PPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWID 360
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
A M +L G++ + R FL R D+ + W G F+ LLD D N G+W + +
Sbjct: 361 AIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLS 420
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+ + + D G+Y+ +LP+LKA P
Sbjct: 421 CSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFP 459
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 119/471 (25%), Positives = 199/471 (42%), Gaps = 58/471 (12%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
A+ WFR LR+ DN AL + ++ V VY +DP + G G R +FL++C
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDP------WFAGSSNVGINRWRFLLQC 58
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRKN 200
L DL NL L + G+P ++ P L K + + + + SE ER ++K
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYD--SEPFGKERDAAIKK- 115
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIE------ 253
L+S++ ++ + T+Y LD I + P Y F+ I
Sbjct: 116 -----LASEAG------VEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLE 164
Query: 254 -----------AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGG 302
KCT +G VP +E+L + + + + GG
Sbjct: 165 MPVETITPEVMKKCTTPVFDDHDEKYG----------VPSLEELGFDTDGLPSAV-WPGG 213
Query: 303 ESAALGRVNEYFWKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEEVKS 359
E+ AL R+ + +K + ++ R N +L T SP+L G +S R Y ++
Sbjct: 214 ETEALTRLERHLERKASVANFERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYFKLTD 271
Query: 360 YERERVANDSTYWVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWR 418
++ N S L+ +L+WR++F + G P ++ W ++ + W
Sbjct: 272 LYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWA 331
Query: 419 DGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPC 477
+G TG+P IDA M +L G++ + R FL R D+ I W G + FE LLD D
Sbjct: 332 EGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWS 391
Query: 478 SNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKE 528
N G+W + + + + + D G+Y+ +LP L+ P +
Sbjct: 392 VNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAK 442
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 116/459 (25%), Positives = 196/459 (42%), Gaps = 38/459 (8%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++ WFR LR+ DN ALL A + V VY +DP + ++ G R +FL++
Sbjct: 23 SVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASS------SVGINRWRFLLQS 76
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRKN 200
L DL +L L + G+P ++ P L K +G + + + SE ER + K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYD--SEPFGKERDAAIMKM 134
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIEAKCTVR 259
++ + + + T +Y LD I + P Y F+ I +
Sbjct: 135 AKEAGVEVVTENSHT------------LYDLDRIIELNGQKPPLTYKRFQALISRMELPK 182
Query: 260 GCIRIPSSFGPPPSVV-------DWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312
+ SS D VP +E+L + + + + GGE+ AL R+++
Sbjct: 183 KPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAV-WQGGETEALVRLDK 241
Query: 313 YFWKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS 369
+ +K + Y+ R N +L T SP+L G +S R Y + R+ N +
Sbjct: 242 HLERKAWVANYERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYYRLWDLYRKVKRNST 299
Query: 370 TYWVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLID 428
LF +L+WR++F + G P ++ W ++ + W +G TG+P ID
Sbjct: 300 PPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWID 359
Query: 429 ANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGA 487
A M +L G++ + R FL R D+ + W G F+ LLD D N G+W + +
Sbjct: 360 AIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLS 419
Query: 488 GVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
+ + + D G+Y+ +LP+LK P
Sbjct: 420 CSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFP 458
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 117/472 (24%), Positives = 201/472 (42%), Gaps = 64/472 (13%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++ WFR LR+ DN AL A + + +Y +DP + ++ G R +FL++
Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASS------AVGINRWRFLLQS 67
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER------L 196
L DL +L L + G+P ++ P L K +G + + + SE ER L
Sbjct: 68 LEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYD--SEPFGKERDAAIIKL 125
Query: 197 VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIEAK 255
++ +VV+ + T+Y+LD I + + P Y F+ I
Sbjct: 126 AKEAGVEVVIENSH----------------TLYNLDRIIELNGNKPPLTYKRFQAIIS-- 167
Query: 256 CTVRGCIRIPSSFGPPPSVV----------------DWGSVPLIEQLELHSPKVSKGMRF 299
R+ P S+V D VP +E+L + ++ + +
Sbjct: 168 -------RMELPKKPVSSIVSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAV-W 219
Query: 300 VGGESAALGRVNEYFWKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEE 356
GGE+ AL R++++ +K + Y+ R N +L T SP+L G +S R Y
Sbjct: 220 QGGETEALARLDKHLERKAWVANYERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYYR 277
Query: 357 VKSYERERVANDSTYWVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFE 415
+ ++ N + L+ +L+WR++F + G P ++ W ++ +
Sbjct: 278 LWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDKNPEALA 337
Query: 416 SWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDY 474
W +G TG+P IDA M +L G++ + R FL R D+ I W G F+ LLD
Sbjct: 338 KWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDA 397
Query: 475 DPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
D N G+W + + + + + D G+YV +LP+LK P
Sbjct: 398 DFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFP 449
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 116/470 (24%), Positives = 198/470 (42%), Gaps = 60/470 (12%)
Query: 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIEC 142
++ WFR LR+ DN ALL A + V VY +DP + ++ G R +FL++
Sbjct: 23 SVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASS------SVGINRWRFLLQS 76
Query: 143 LADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVER--LVRKN 200
L DL +L L + G+P ++ P L K +G + + + SE ER + K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYD--SEPFGKERDAAIMKM 134
Query: 201 LQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDI-PFDHSSLPDVYTHFRKSIEAKCTVR 259
++ + + + T +Y LD I + P Y F+ I
Sbjct: 135 AKEAGVEVVTENSHT------------LYDLDRIIELNGQKPPLTYKRFQALISR----- 177
Query: 260 GCIRIPSSFGPPPSVV------------------DWGSVPLIEQLELHSPKVSKGMRFVG 301
+ +P P+V D VP +E+L + + + + G
Sbjct: 178 --MELPKK----PAVAVSSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAV-WQG 230
Query: 302 GESAALGRVNEYFWKKDLLKVYKETR---NEMLGPDYSTKFSPWLASGSISPRYIYEEVK 358
GE+ AL R++++ +K + Y+ R N +L T SP+L G +S R Y +
Sbjct: 231 GETEALARLDKHLERKAWVANYERPRMNANSLLAS--PTGLSPYLRFGCLSCRLFYYRLW 288
Query: 359 SYERERVANDSTYWVLF-ELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESW 417
++ N + LF +L+WR++F + G P ++ W ++ + W
Sbjct: 289 DLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKW 348
Query: 418 RDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDP 476
+G TG+P IDA M +L G++ + R FL R D+ + W G F+ LLD D
Sbjct: 349 AEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADF 408
Query: 477 CSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
N G+W + + + + + D G+Y+ +LP+LK P
Sbjct: 409 SVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFP 458
>sp|P05066|PHR_YEAST Deoxyribodipyrimidine photo-lyase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHR1 PE=1
SV=1
Length = 565
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 134/521 (25%), Positives = 227/521 (43%), Gaps = 78/521 (14%)
Query: 73 KALKRNGKGVAIV--WFRNDLRVLDNEAL---------LKAWDSSEMVLPVYCVDPRHSQ 121
K K + + V+ V WFRNDLR+ DN L L+ ++ + VY ++ +
Sbjct: 65 KKQKTSFENVSTVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWR 124
Query: 122 TTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVY 181
G+ + F++ L +L+++L + LL+ + S +K F V
Sbjct: 125 AHMDSGW------KLMFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEF----VE 174
Query: 182 AQKETCSEELNVER----LVRKNLQ----QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD 233
KE C +NV ++ N++ ++ + + + QLK + +
Sbjct: 175 FFKEKC---MNVSSGTGTIITANIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGL 231
Query: 234 IPFDHSSLPDVYT-----------HFRKSIEAKCTVRGC--IRIPSSFGPPPSVVDWGSV 280
I D + V+T +++KS C + ++ +F P
Sbjct: 232 ITTDRGTNYSVFTPWYKKWVLYVNNYKKSTSEICHLHIIEPLKYNETFELKP-----FQY 286
Query: 281 PLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRN---EMLGPDYST 337
L ++ + PK SK E AAL R+ KD L N +ML ++
Sbjct: 287 SLPDEFLQYIPK-SKWCLPDVSEEAALSRL------KDFLGTKSSKYNNEKDMLYLGGTS 339
Query: 338 KFSPWLASGSISPRYIYEEV------KSYERERVANDSTYWVLFELMWRDYFRFISLKYG 391
S ++ +G IS R I + + + N ST + E+ WRD++R +
Sbjct: 340 GLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKDNSSTQNFIKEVAWRDFYRHCMCNWP 399
Query: 392 NSLFHLGGPRKLE---YKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIA 448
+ +G P +L+ KW + FE W G TG P++DA M++L TG+++NR R I
Sbjct: 400 YT--SMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIPIVDAIMRKLLYTGYINNRSRMIT 457
Query: 449 CSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQN 507
SFL +++ IDWR G WF L+D D SN G W + + G D + R F++ QA+
Sbjct: 458 ASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGGWGFCSSTGIDAQPYFRVFNMDIQAKK 517
Query: 508 YDREGEYVAYWLPQLKALPKER-RNFPGGSYIEQIVSLKHG 547
YD + +V W+P+L + +R N+P + +V LKH
Sbjct: 518 YDPQMIFVKQWVPELISSENKRPENYP-----KPLVDLKHS 553
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 112/221 (50%), Gaps = 9/221 (4%)
Query: 302 GESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE 361
GE AAL + + K L Y E R+ + G + ++ SP+ A G +SPR + ++E
Sbjct: 178 GEEAALAGLRAFLEAK--LPRYAEERDRLDG-EGGSRLSPYFALGVLSPR-----LAAWE 229
Query: 362 RERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGC 421
ER + + EL+WRD+ + + PR + W +D+ LF++W +G
Sbjct: 230 AERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGK 289
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG PL+DA M+EL TGF+SNR R A F V+ + + W+ E F LLD D N
Sbjct: 290 TGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQ 349
Query: 482 NWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQ 521
W + G+G D R F+ Q + +D EG ++ W P+
Sbjct: 350 GWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPE 390
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G +VW R DLR+ D+ ALL+A +V + +DP + +TT P+ R + +
Sbjct: 2 GPLLVWHRGDLRLHDHPALLEALARGPVV-GLVVLDPNNLKTT-----PR----RRAWFL 51
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA 182
E + LR+ RG L + G P E +P A+ A AVYA
Sbjct: 52 ENVRALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYA 93
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 130/267 (48%), Gaps = 11/267 (4%)
Query: 272 PSVVDWGS-----VPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKET 326
P V D G VP +E+L F GGE+ AL R+ E K+ + +++
Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEKP 256
Query: 327 RNE---MLGPDYSTKFSPWLASGSISPRYIYEEVKS-YERERVANDSTYWVLFELMWRDY 382
+ + L P +T SP+L G +S RY Y ++ Y + + + +L+WRD+
Sbjct: 257 KGDPSAFLKP-ATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPPVSLTGQLLWRDF 315
Query: 383 FRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442
F ++ N G + W+++++LF +WRDG TGYP IDA M +L G+M +
Sbjct: 316 FYTVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMHH 375
Query: 443 RGRQIACSFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSI 501
R FL R D+ I W G + FE L+D D N GNW + + + R +S
Sbjct: 376 LARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYHRIYSP 435
Query: 502 PKQAQNYDREGEYVAYWLPQLKALPKE 528
+ YD G Y+ +++P LK +PKE
Sbjct: 436 TSFGKKYDPNGNYIRHFIPVLKDMPKE 462
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 84 IVWFRNDLRVLDNEAL--LKAWDSSEMVLPVYCVDPRH---SQTTYHFGFPKTGALRAQF 138
+VWFR LRV DN AL + ++ + PV+ +DPR+ Q G + G R +F
Sbjct: 16 MVWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRF 75
Query: 139 LIECLADL 146
L+E L+DL
Sbjct: 76 LLESLSDL 83
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 9/221 (4%)
Query: 302 GESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE 361
GE AAL + + K L Y E R+ + G + ++ SP+ A G +SPR + ++E
Sbjct: 178 GEEAALAGLRAFLEAK--LPRYAEERDRLDG-EGGSRLSPYFALGVLSPR-----LAAWE 229
Query: 362 RERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGC 421
ER + + EL+WRD+ + + PR W +D+ LF +W +G
Sbjct: 230 AERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQALPWQEDEALFRAWYEGR 289
Query: 422 TGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481
TG PL+DA M+EL TGF+SNR R A F V+ + + W+ E F LLD D N
Sbjct: 290 TGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQ 349
Query: 482 NWTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQ 521
W + G+G D R F+ Q + +D EG ++ W P+
Sbjct: 350 GWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPE 390
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLI 140
G +VW R DLR+ D+ ALL+A +V + +DP + +TT P+ R + +
Sbjct: 2 GPLLVWHRGDLRLHDHPALLEALARGPVV-GLVVLDPNNLKTT-----PR----RRAWFL 51
Query: 141 ECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYA 182
E + LR+ RG L + G P E +P A+ A AVYA
Sbjct: 52 ENVRALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYA 93
>sp|Q89AJ9|PHR_BUCBP Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=phrB PE=3 SV=1
Length = 478
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 122/461 (26%), Positives = 201/461 (43%), Gaps = 54/461 (11%)
Query: 81 GVAIVWFRNDLRVLDNEAL-LKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFL 139
V ++WFRNDLR+ DN AL +++ VL ++ P+ Q+
Sbjct: 2 NVNLMWFRNDLRLSDNSALHFSCRNNASTVLALFIATPK------------------QWE 43
Query: 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERL--- 196
CLA +K L+ + + L ++ I L F + E+ + + ++
Sbjct: 44 RHCLAPKKKMLIYKNIVAL------KKKITELGIIFYYYESTDYLESTNYIIEFCKIHKV 97
Query: 197 --VRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSI-- 252
+ NL+ Q DK K +H D + S+ + Y K
Sbjct: 98 TSIFFNLEYEFYERQR-DKIIKKKLKKNNIIINCFH-DSVLITPGSIKNSYGKMYKKFSY 155
Query: 253 -EAKCTVRGCIRIPSSFGPP--PSVVDWGSVPL-IEQLELHSPKVSKGMRFVGGESAALG 308
+ KC + + IPS F P ++ D S+ I + K + F GE
Sbjct: 156 FKYKCIKQLQLNIPSCFPKPQNKNLHDHYSLDFTIPIFHTYLEKFDANI-FPIGEDIVYE 214
Query: 309 RVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEV-KSYERERVAN 367
++ F+ K Y + E+ + ++ S L+ G ISPR + K Y
Sbjct: 215 KLK--FFIKYAFNKYNFDQ-EIFELNSTSMLSAHLSIGVISPRQCVTLLFKEYPDIIHKL 271
Query: 368 DSTYWVLFELMWRDYFRFISLKYGN-----SLFHLGGPRKLEYKWSQDQKLFESWRDGCT 422
+ W+ EL+WR++++ + Y N SL+H KW + W+ G T
Sbjct: 272 EECKWIN-ELLWREFYQHLLYFYPNIGQNQSLYHWEN----RIKWDNNLYYLNLWKQGNT 326
Query: 423 GYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 482
GYP+IDA M++L G++SNR R I SFLV+++ IDWR G E+F + L+D D SN GN
Sbjct: 327 GYPIIDAGMRQLKQLGWISNRLRMITASFLVKNLLIDWRKGEEYFMSQLIDGDFASNNGN 386
Query: 483 WTYGAGVGNDPRED-RYFSIPKQAQNYDREGEYVAYWLPQL 522
W + A VG D R F+ Q++ +D +++ ++P+L
Sbjct: 387 WQWIASVGTDSMPYFRIFNPMLQSKKFDINAKFIRKYIPEL 427
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 134/478 (28%), Positives = 206/478 (43%), Gaps = 69/478 (14%)
Query: 84 IVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECL 143
IVWFR DLRV DN AL A + V+ ++ P + YH G + +L L
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGP-VIALFVWAPEE-EGHYH-----PGRVSRWWLKNSL 67
Query: 144 ADLRKNLMNRGLNLLIRHGKPEEIIPSL---AKSFGAHAVYAQKETCSEELNVERLVRKN 200
A L +L + G L+ + + + + SL KS GA ++ + + LVR +
Sbjct: 68 AQLDSSLRSLGTCLITK--RSTDSVASLLDVVKSTGASQIF-----FNHLYDPLSLVRDH 120
Query: 201 LQQVVLSSQS-NDKSTNHPQLKLIWGTTMYHLDDI--PFDHSSLPDVYTHFRKSIEAKCT 257
+ VL++Q +S N L W T D++ PF ++ F +
Sbjct: 121 RAKDVLTAQGIAVRSFNADLLYEPWEVT----DELGRPFS------MFAAFWER------ 164
Query: 258 VRGCIRIP----SSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVN-- 311
C+ +P S PP ++ + + KG + + + G N
Sbjct: 165 ---CLSMPYDPESPLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGD 221
Query: 312 ---EYFWKKDLLKVYKETRNEMLGPDYSTKF-SPWLASGSISPRYIYEEVK------SYE 361
F LL+ K R +T F SP L G +S R ++ V+ + E
Sbjct: 222 KALTTFINGPLLEYSKNRRK---ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANE 278
Query: 362 RERVANDSTYWVLFELMWRDYFRFISLKYGNS-----LFHLGGPRKLEYKWSQDQKLFES 416
+S L + R+Y R+IS + S L HL + W+ D+ F++
Sbjct: 279 GNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKF-----FPWAVDENYFKA 333
Query: 417 WRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDP 476
WR G TGYPL+DA M+EL TG++ +R R + SF V+ + + WR G ++F LLD D
Sbjct: 334 WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADL 393
Query: 477 CSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFP 533
S+ W Y G D RE DR + + +D GEYV WLP+L LP + + P
Sbjct: 394 ESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHP 451
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 102/463 (22%), Positives = 187/463 (40%), Gaps = 65/463 (14%)
Query: 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIE 141
+ +VW + DLR+ D+ L A S L +Y +P G +F+ +
Sbjct: 4 INLVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEP------MLLGDAHYSERHWRFVWQ 57
Query: 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNL 201
L + ++L +LI + +A+ + A+Y+ +E+ + +++L
Sbjct: 58 SLQAINRDLAQSKGEVLIVTSDWQTCFARIAERYAIEAIYSH-----QEVGLACTFQRDL 112
Query: 202 QQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRG 260
Q + P +I G T + D+ H+++ + + C
Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDE-------------HWQQVMRSPCC--- 156
Query: 261 CIRIPSSFGPPPSVVDW-----GSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFW 315
P + +W ++ L + GM+ GG A + ++F
Sbjct: 157 --------DPDLTRANWLKLDAATLGLRSDIPATWQSKQAGMQ-TGGSDMAWATLEDFFA 207
Query: 316 KKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYE------EVKSYERERVANDS 369
++ + Y+ + L ++ SP+LA G+IS R +Y+ V + R +A S
Sbjct: 208 RRGR-EYYRSISSPSLARHACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSS 266
Query: 370 -TYWVL-----FELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTG 423
+W FE FR ++ Y + L + +W+ G TG
Sbjct: 267 RLHWHCHFIQKFESECEMEFRCVNRAYDSLLQQSSDAPAAQ---------LAAWQTGHTG 317
Query: 424 YPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 483
PL+DA M+ L TG+++ R R + S L M +DWR G + LD++P +Y +
Sbjct: 318 IPLVDACMRCLIQTGYLNFRMRAMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQF 377
Query: 484 TYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526
AGV R ++ KQAQ +D EG+++ W+P+L +P
Sbjct: 378 QMQAGVTGT-NTIRIYNPTKQAQEHDSEGQFIHKWVPELAQVP 419
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 211/489 (43%), Gaps = 79/489 (16%)
Query: 84 IVWFRNDLRVLDNEALLKAW------DSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQ 137
I+WFR+ LR+ DN +LL+A S + P++ D + T G R +
Sbjct: 6 ILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKL------VGFNRMK 59
Query: 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLV 197
FL+E LADL + L G L + G ++ L EELN+ +L
Sbjct: 60 FLLESLADLDRQLREIGGQLYVFKGNAVNVMRRLF----------------EELNIRKLC 103
Query: 198 RKNLQQVVLSSQSNDKSTNHPQLKLI-----WGTTMYHLDDIPFDHSSLPDV-YTHFRKS 251
+ + + ++ +D N ++ + T++ I + +P + Y F +
Sbjct: 104 FEQDCEPIWKAR-DDAIQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHT 162
Query: 252 IEAKCTVRGCIRIPSSFGPPPSVVDWGSVP--LIEQLELH----------------SPKV 293
++ + PS V++GS+P L ++++L +P +
Sbjct: 163 VDIIGKPPRPVAAPSF-----EFVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDI 217
Query: 294 SKGMRFVGGESAALGRVNEYFWKKD--LLKVY---KETRNEMLGPDYSTKFSPWLASGSI 348
S +++GGE+ AL + +++ L Y + + E L P T S L G +
Sbjct: 218 SH-QQWMGGETKALECLGHRLKQEEEAFLGGYFLPTQAKPEFLVP--PTSMSAALRFGCL 274
Query: 349 SPRY-------IYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR 401
S R +YE+V++ + R N + +L+WR+YF +S+ + P
Sbjct: 275 SVRMFYWCVHDLYEKVQANNQYR--NPGGQHITGQLIWREYFYTMSVHNPHYAEMEANPI 332
Query: 402 KLEYKWSQDQK-LFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRD-MGID 459
L W + + + W++G TG+P+IDA M++L G++ + R I +FL R + I
Sbjct: 333 CLNIPWYEPKDDSLDRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWIS 392
Query: 460 WRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRED--RYFSIPKQAQNYDREGEYVAY 517
W G + F LLD D GNW + + + D S A+ D +GEYV
Sbjct: 393 WEAGVQHFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRR 452
Query: 518 WLPQLKALP 526
+LP+LK LP
Sbjct: 453 YLPELKNLP 461
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 125/496 (25%), Positives = 209/496 (42%), Gaps = 45/496 (9%)
Query: 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEM---VLPVYCVDPRHSQTTYHFGFPKTGALRA 136
+G ++WFR+ LR+ DN ALL A + + ++PV+ D + T G R
Sbjct: 4 RGANVLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTK------SVGYNRM 57
Query: 137 QFLIECLADLRKNLMN----RGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQ---KETCSE 189
+FL++ L DL + L + RG L + G+P I L + H + A+ + +E
Sbjct: 58 RFLLDSLQDLDEQLQSATEGRG-RLFVFEGEPTLIFRRLHEQVRLHKICAELDCEPIWNE 116
Query: 190 ELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFR 249
RL+ + L + S+ + P+L + + L F H+ + + R
Sbjct: 117 RDESARLLCRELGIEYVEKVSH--TLWDPRLVIETNGGIPPLTYQMFLHT-VQIIGVPPR 173
Query: 250 KSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVS--KGMRFVGGESAAL 307
+I+A I++ D VP E ++S + + + GGE+ AL
Sbjct: 174 PAIDAHINDATFIQLAPELRQHLGCFD--QVPNPEHFNIYSDNMGFLAKINWRGGETQAL 231
Query: 308 GRVNEYF------WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKS-Y 360
+ E +++ + N P S L G +S R Y V +
Sbjct: 232 ALLEERLKVERNAFERGYYLPNQANPNIQEAPK---SMSAHLRFGCLSVRRFYWSVHDLF 288
Query: 361 ERERVAN-------DSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ-DQK 412
E ++A + + +L+WR+YF +S+ N G L W++ D+
Sbjct: 289 ENVQLAACVRGVQIEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLTIPWAKPDEN 348
Query: 413 LFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFETCL 471
L + WR G TG+PLID M++L G++ + R +FL R + W G + F L
Sbjct: 349 LLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYL 408
Query: 472 LDYDPCSNYGNWTYGAGVGNDPREDRYF-SIP-KQAQNYDREGEYVAYWLPQLKALPKER 529
LD D GNW + + + D + P A+ D EG Y+ ++P+LK LPKE
Sbjct: 409 LDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPELKNLPKEY 468
Query: 530 RNFPGGSYIEQIVSLK 545
+ P EQ V +
Sbjct: 469 IHEPWRLSAEQQVKFE 484
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229,715,066
Number of Sequences: 539616
Number of extensions: 10343734
Number of successful extensions: 24754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 24486
Number of HSP's gapped (non-prelim): 122
length of query: 577
length of database: 191,569,459
effective HSP length: 123
effective length of query: 454
effective length of database: 125,196,691
effective search space: 56839297714
effective search space used: 56839297714
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)