Query 044814
Match_columns 577
No_of_seqs 254 out of 1546
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:06:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j4d_A Cryptochrome 3, cryptoc 100.0 2E-117 7E-122 978.5 45.1 495 46-550 2-509 (525)
2 1np7_A DNA photolyase; protein 100.0 1E-115 3E-120 959.4 43.0 458 81-551 6-479 (489)
3 3fy4_A 6-4 photolyase; DNA rep 100.0 1E-115 4E-120 961.0 35.4 459 80-550 4-488 (537)
4 1owl_A Photolyase, deoxyribodi 100.0 2E-112 8E-117 930.4 37.9 445 81-550 3-463 (484)
5 3tvs_A Cryptochrome-1; circadi 100.0 8E-112 3E-116 932.5 34.7 453 80-550 3-503 (538)
6 1dnp_A DNA photolyase; DNA rep 100.0 4E-111 1E-115 917.3 35.8 439 82-550 2-459 (471)
7 2wq7_A RE11660P; lyase-DNA com 100.0 4E-111 1E-115 931.9 34.5 448 81-550 29-512 (543)
8 1u3d_A Cryptochrome 1 apoprote 100.0 2E-110 8E-115 920.5 36.6 445 79-550 10-483 (509)
9 2e0i_A 432AA long hypothetical 100.0 8E-110 3E-114 897.5 29.5 412 83-550 3-420 (440)
10 2j07_A Deoxyribodipyrimidine p 100.0 2E-105 6E-110 861.0 34.9 406 82-550 3-409 (420)
11 3umv_A Deoxyribodipyrimidine p 100.0 1.8E-89 6.1E-94 749.1 25.9 417 78-533 35-497 (506)
12 2xry_A Deoxyribodipyrimidine p 100.0 6E-85 2.1E-89 714.7 30.3 399 81-520 37-481 (482)
13 3zxs_A Cryptochrome B, rscryb; 100.0 9E-66 3.1E-70 555.1 20.4 411 82-546 16-479 (522)
14 3dlo_A Universal stress protei 84.2 11 0.00037 33.1 11.7 85 90-184 32-125 (155)
15 3fdx_A Putative filament prote 83.8 7.7 0.00026 33.0 10.3 91 95-185 16-115 (143)
16 3s3t_A Nucleotide-binding prot 79.0 12 0.00041 31.9 9.9 94 90-184 13-116 (146)
17 3tnj_A Universal stress protei 76.8 21 0.00071 30.5 10.8 91 94-184 18-117 (150)
18 3fg9_A Protein of universal st 76.4 11 0.00037 32.8 8.8 89 94-184 29-127 (156)
19 3hgm_A Universal stress protei 71.9 24 0.00081 29.9 9.8 90 95-184 15-118 (147)
20 2dum_A Hypothetical protein PH 67.1 20 0.0007 31.4 8.5 91 94-185 17-126 (170)
21 3idf_A USP-like protein; unive 60.3 61 0.0021 26.9 10.0 87 96-184 15-109 (138)
22 2z08_A Universal stress protei 53.6 83 0.0028 26.1 9.7 84 96-185 16-108 (137)
23 1tq8_A Hypothetical protein RV 52.3 27 0.00094 30.7 6.6 46 140-185 80-128 (163)
24 1mjh_A Protein (ATP-binding do 48.9 32 0.0011 29.7 6.4 46 139-184 81-128 (162)
25 3olq_A Universal stress protei 48.8 1.2E+02 0.004 29.4 11.3 87 96-184 177-274 (319)
26 2gvs_A Chemosensory protein CS 48.6 5 0.00017 33.9 0.8 22 505-526 87-108 (109)
27 3mt0_A Uncharacterized protein 47.8 1.1E+02 0.0037 29.3 10.7 84 96-184 155-245 (290)
28 3fvv_A Uncharacterized protein 47.1 23 0.00077 32.6 5.3 45 140-184 94-138 (232)
29 3loq_A Universal stress protei 38.6 99 0.0034 29.6 8.8 76 90-184 178-259 (294)
30 2gm3_A Unknown protein; AT3G01 35.9 63 0.0022 28.3 6.3 46 140-185 86-133 (175)
31 1jmv_A USPA, universal stress 31.3 76 0.0026 26.4 5.8 41 145-185 68-111 (141)
32 1b43_A Protein (FEN-1); nuclea 31.3 1.1E+02 0.0037 30.8 7.8 44 140-183 129-172 (340)
33 3mn1_A Probable YRBI family ph 30.8 47 0.0016 30.0 4.6 39 146-184 54-92 (189)
34 3loq_A Universal stress protei 29.5 1.8E+02 0.006 27.8 8.9 82 101-185 45-132 (294)
35 3mt0_A Uncharacterized protein 28.6 3E+02 0.01 26.0 10.4 77 90-185 15-98 (290)
36 3ij5_A 3-deoxy-D-manno-octulos 27.8 55 0.0019 30.4 4.5 39 146-184 84-122 (211)
37 3mmz_A Putative HAD family hyd 27.7 64 0.0022 28.6 4.8 38 146-184 47-84 (176)
38 3n07_A 3-deoxy-D-manno-octulos 26.7 60 0.0021 29.7 4.5 37 148-184 62-98 (195)
39 3e8m_A Acylneuraminate cytidyl 26.6 65 0.0022 27.8 4.6 38 147-184 40-77 (164)
40 1k1e_A Deoxy-D-mannose-octulos 25.8 73 0.0025 28.2 4.9 36 148-183 45-80 (180)
41 4gxt_A A conserved functionall 25.3 35 0.0012 35.2 2.9 46 139-184 222-273 (385)
42 3n1u_A Hydrolase, HAD superfam 24.6 72 0.0025 28.8 4.6 37 148-184 56-92 (191)
43 1cmk_I CAMP-dependent protein 24.1 19 0.00066 22.1 0.3 9 560-568 10-18 (26)
44 1k19_A Chemosensory protein CS 23.9 17 0.00057 30.8 0.0 20 505-524 85-104 (112)
45 2p9j_A Hypothetical protein AQ 23.2 1.4E+02 0.0047 25.5 6.1 36 148-183 46-81 (162)
46 3rjz_A N-type ATP pyrophosphat 23.2 1E+02 0.0035 29.4 5.5 74 97-183 19-97 (237)
47 2r8e_A 3-deoxy-D-manno-octulos 22.2 85 0.0029 28.1 4.6 38 147-184 62-99 (188)
48 3gkn_A Bacterioferritin comigr 20.7 1.5E+02 0.0051 25.2 5.8 42 138-179 53-94 (163)
49 4fe3_A Cytosolic 5'-nucleotida 20.6 91 0.0031 30.2 4.7 43 142-184 145-191 (297)
50 3olq_A Universal stress protei 20.4 5.5E+02 0.019 24.3 11.3 91 90-185 15-120 (319)
No 1
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=2e-117 Score=978.46 Aligned_cols=495 Identities=71% Similarity=1.243 Sum_probs=416.6
Q ss_pred cccccccCCCchhhhhhHHHhhhhccccccc--cCC-CCeEEEEecCcccccCcHHHHHHHhCCCCEEEEEEEcCCcccc
Q 044814 46 PHCQVIPGADSREINHIVEETFGRYTSKALK--RNG-KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQT 122 (577)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~L~WFRrDLRl~DN~AL~~A~~~~~~vlpvyi~dp~~~~~ 122 (577)
.+++.+|++.++|+.|+.++.++++++++.. +++ ++.+|+|||+|||++||+||.+|++.+.+|+||||+||.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~~ 81 (525)
T 2j4d_A 2 DHIHRVPALTEEEIDSVAIKTFERYALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHT 81 (525)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHHHBCSCCTTCCCTTCCEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGSB
T ss_pred CccccCCCCCHHHHHHHhHHHhhccCCcccccccCCCCCeEEEEeCCCcCcchhHHHHHHHhcCCcEEEEEEECchhhcc
Confidence 3678999999999999999999999999998 665 6789999999999999999999998888999999999988742
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhh
Q 044814 123 TYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ 202 (577)
Q Consensus 123 ~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~ 202 (577)
.+.++++..|++|++||++||++|+++|+++|++|+|+.|+++++|++|++++++++|+++.+|++.++++|..|++.|.
T Consensus 82 ~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~ 161 (525)
T 2j4d_A 82 THFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLK 161 (525)
T ss_dssp CTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHH
Confidence 22113456899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hccccccCCCcccCCCceeEeecceeccCCCCCCCCCCCCcccchhHHHHHHhcccCCccCCCCCCCCCCCCCCCCCCCc
Q 044814 203 QVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPL 282 (577)
Q Consensus 203 ~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~i~~~~~~~p~~ft~F~k~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~p~ 282 (577)
+.++. ..++.+++.+++++++++...+.+|.+||+|++++++...+..|++.|..+.+.+...+...+|+
T Consensus 162 ~~gv~----------i~~~~~~~~~L~~p~~v~~~~g~~~~vft~F~r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~ 231 (525)
T 2j4d_A 162 RVGNS----------TKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPT 231 (525)
T ss_dssp TTCSS----------CEEEEECCSCSSCGGGSSSCGGGCCSSHHHHHHHHHHHCCCCCCCCBCSCCCCCCCCSCCCCCCC
T ss_pred hcCCc----------eEEEEecCCEEEccccccccCCCCcccHHHHHHHHHHhcCCCCCCCCccccCCccccccccCCCC
Confidence 65420 13577888899999999998889999999999999886544445554443322221112334566
Q ss_pred hhhhccCCCcccCCCcccccHHHHHHHHHHHhhhccchhchhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhHh
Q 044814 283 IEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYER 362 (577)
Q Consensus 283 l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~Fl~~~~~l~~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~ 362 (577)
++++++..........|+|||++|+++|++||.++++|..|++.||.|++.++||+|||||+|||||||+|++++.++..
T Consensus 232 l~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~Y~~~Rd~~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~ 311 (525)
T 2j4d_A 232 LEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEK 311 (525)
T ss_dssp TTTTTCCCCCCCSEEEECCSHHHHHHHHHHHHTTSCCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHcCCCcccccccCCCCCcHHHHHHHHHHHHhhCchHhhhcccCCCccccccCCCcChhhcCCcCCHHHHHHHHHHHhh
Confidence 66665543211122348999999999999999423579999999998766778999999999999999999999987544
Q ss_pred hhccCCchHhHhhhhhHHHHHHHHHHHcCCcccccCCCcccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccch
Q 044814 363 ERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSN 442 (577)
Q Consensus 363 ~~~~~~~~~~fl~eL~WREf~~~~~~~~~~~~~~~~~~~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHn 442 (577)
.....+++++|++||+|||||++++++++...+...+..+..++|+.+.+.|++|++|+|||||||||||||++||||||
T Consensus 312 ~~~~~~~~~~f~~EL~WREf~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHn 391 (525)
T 2j4d_A 312 ERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSN 391 (525)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGTSTTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCH
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCchhhhccCchhhcCCCCCCHHHHHHHHcCCCCChHHHHHHHHHHHHCCcCH
Confidence 33344577899999999999999999888655554433456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhccccCCCCCchhhhhhhCCCCCCCCCcccChhhhhhhcCCccchhhhccccc
Q 044814 443 RGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQL 522 (577)
Q Consensus 443 r~RmivAsFL~k~L~idWr~G~~~F~~~LiD~D~a~n~g~Wqw~ag~g~d~~~~RifNP~~q~~kfDp~G~yIr~wvPEL 522 (577)
|+||||||||||+|+||||.|++||+++|||||+|||+|||||+||+|+|+++||||||++|++||||+|+|||||||||
T Consensus 392 r~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~a~n~g~WQw~aG~g~D~~~~RifNP~~q~kk~Dp~G~YIrrwvPEL 471 (525)
T 2j4d_A 392 RGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQL 471 (525)
T ss_dssp HHHHHHHHHHHHTSCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSSCGGGCCCCCHHHHHHHHCTTCHHHHHHSGGG
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHhccccchhcChHHHHhhcCCCCCccccccCCHHHHhhhcCCCchhHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCC----------CCCCcCcccccccccc
Q 044814 523 KALPKERRNFPG----------GSYIEQIVSLKHGNIN 550 (577)
Q Consensus 523 ~~lp~~~ih~P~----------~~Yp~PIV~~~~~~~~ 550 (577)
+++|.++||+|| .+||.|||||..++..
T Consensus 472 ~~~p~~~ih~Pw~~~~~~~~~g~~Yp~Pi~~~~~~~~~ 509 (525)
T 2j4d_A 472 RRLPKEKRHWPGRLMYMDTVVPLKHGNGPMAGGSKSGG 509 (525)
T ss_dssp TTSCTTTTTSCHHHHTCCCSSCCSCCC-----------
T ss_pred hcCChhcccCCccCcccccccCCCCCCCcccchhhhhc
Confidence 999999999994 4899999999976554
No 2
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=9.9e-116 Score=959.36 Aligned_cols=458 Identities=50% Similarity=0.925 Sum_probs=398.0
Q ss_pred CeEEEEecCcccccCcHHHHHHHhCCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEEE
Q 044814 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIR 160 (577)
Q Consensus 81 ~~~L~WFRrDLRl~DN~AL~~A~~~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v~ 160 (577)
+++|||||+|||++||+||.+|++.+.+|+||||+||.++. .+..+++..|++|++||++||++|+++|+++|++|+|+
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~-~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~ 84 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFA-QTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVT 84 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGS-BCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEeCCCCCcchHHHHHHHHhcCCCEEEEEEECchhhc-ccccccCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 57999999999999999999999988899999999998874 22223456899999999999999999999999999999
Q ss_pred eCChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecceeccCCCCCCCCCC
Q 044814 161 HGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSS 240 (577)
Q Consensus 161 ~G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~i~~~~~~ 240 (577)
.|++.++|++|++++++++|+++.+|++.++++|..|++.|.+.+++ ++.+++.++++++++++..+.
T Consensus 85 ~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~------------~~~~~~~~l~~~~~~~~~~g~ 152 (489)
T 1np7_A 85 TGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIE------------AKGYWGSTLCHPEDLPFSIQD 152 (489)
T ss_dssp ESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCE------------EEEECCSSSSCGGGSSSCGGG
T ss_pred ECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCe------------EEEecCCeeeCccccccCCCC
Confidence 99999999999999999999999999999999999999998766554 467788889999999988899
Q ss_pred CCcccchhHHHHH-HhcccCCccCCCCCCCCCCCCCCCCCCCchhhhccCCCcccCCCcccccHHHHHHHHHHHhhhccc
Q 044814 241 LPDVYTHFRKSIE-AKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDL 319 (577)
Q Consensus 241 ~p~~ft~F~k~~~-~~~~~~~~~~~P~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~Fl~~~~~ 319 (577)
+|.+||+|++.++ +...+..|++.|..+.+.+.......+|.+++++++.........|+|||++|+++|++||..+++
T Consensus 153 ~~~vft~F~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~ 232 (489)
T 1np7_A 153 LPDLFTKFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGDR 232 (489)
T ss_dssp CCSSHHHHHHHHHTTTCCCCCCCCCCSCCCCCCCCCCCCCCCCGGGSCCCCCCTTSSCCCCCSHHHHHHHHHHHHTTSCC
T ss_pred CCchHHHHHHHHHHhccCCCCCCCCcccccCccccccccCCCCHhhcCCCCcCccccCCCCCcHHHHHHHHHHHHhcchh
Confidence 9999999999998 654444455555433222211111245677777664322222335899999999999999953468
Q ss_pred hhchhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhHhhhccCCchHhHhhhhhHHHHHHHHHHHcCCcccccCC
Q 044814 320 LKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGG 399 (577)
Q Consensus 320 l~~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~fl~eL~WREf~~~~~~~~~~~~~~~~~ 399 (577)
+..|++.||.|++.++||+|||||+||+||||+|++++.+++......+++++|++||+|||||+++++++|+......+
T Consensus 233 l~~Y~~~Rd~~~~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~ 312 (489)
T 1np7_A 233 LKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGG 312 (489)
T ss_dssp GGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTT
T ss_pred HhhhhhcccCCccccCCcCcChhhcCCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHCcchhhhhcC
Confidence 99999999988766789999999999999999999999876544334457889999999999999999999976655556
Q ss_pred CcccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhccccCCCCC
Q 044814 400 PRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSN 479 (577)
Q Consensus 400 ~~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivAsFL~k~L~idWr~G~~~F~~~LiD~D~a~n 479 (577)
..++.++|.+|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||.|++||+++|||||+++|
T Consensus 313 ~~~~~~~W~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~a~N 392 (489)
T 1np7_A 313 LLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSN 392 (489)
T ss_dssp TTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHCTTCCHHHH
T ss_pred cccccCCCccCHHHHHHHHcCCCCChhHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCChhHHHHHHHHhcccChhcC
Confidence 66678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCcccChhhhhhhcCCccchhhhccccccCCCccccCCCCC---------------CCCcCcccc
Q 044814 480 YGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGG---------------SYIEQIVSL 544 (577)
Q Consensus 480 ~g~Wqw~ag~g~d~~~~RifNP~~q~~kfDp~G~yIr~wvPEL~~lp~~~ih~P~~---------------~Yp~PIV~~ 544 (577)
+|||||+||+|+|++|||||||++|++||||+|+|||||||||+++|+++||+||. +||.|||||
T Consensus 393 ~g~wqw~ag~g~d~~~~RifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~~~~~g~~YP~PiVd~ 472 (489)
T 1np7_A 393 WGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNF 472 (489)
T ss_dssp HHHHHHHHTSSCCTTSCCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSGGGGCGGGCCHHHHHHTTCCBTTTBCCCSSCH
T ss_pred hHhhhhhhccCCCcccccccCHHHHhhhcCCCCccHHHhCHHhhccCcccccCCccCCHHHHHHhccccCCCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999953 899999999
Q ss_pred ccccccc
Q 044814 545 KHGNINQ 551 (577)
Q Consensus 545 ~~~~~~~ 551 (577)
++++.+-
T Consensus 473 ~~~r~~a 479 (489)
T 1np7_A 473 HQSVEAR 479 (489)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9977653
No 3
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-115 Score=961.00 Aligned_cols=459 Identities=27% Similarity=0.432 Sum_probs=389.4
Q ss_pred CCeEEEEecCcccccCcHHHHHHHhCCCCEEEEEEEcCCccccc---ccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCc
Q 044814 80 KGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTT---YHFGFPKTGALRAQFLIECLADLRKNLMNRGLN 156 (577)
Q Consensus 80 ~~~~L~WFRrDLRl~DN~AL~~A~~~~~~vlpvyi~dp~~~~~~---~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~ 156 (577)
++.+|||||||||++||+||++|++.+.+|+||||+||.++... ..+|...+|++|++||++||++|+++|+++|++
T Consensus 4 ~~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~~ 83 (537)
T 3fy4_A 4 GSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSR 83 (537)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEeCCCcccchhHHHHHHHhcCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 46799999999999999999999998889999999999887411 123444689999999999999999999999999
Q ss_pred EEEEeCChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecceeccCCCCC-
Q 044814 157 LLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIP- 235 (577)
Q Consensus 157 L~v~~G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~i~- 235 (577)
|+|++|+++++|++|+++++|++||+|++|+++++++|..|++.|++.+|+ ++.+++.++++++++.
T Consensus 84 L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~------------~~~~~~~~L~~p~~v~~ 151 (537)
T 3fy4_A 84 LLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVE------------VFSPVSHTLFNPAHIIE 151 (537)
T ss_dssp CEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCE------------EECCCCSSSSCHHHHHH
T ss_pred eEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCe------------EEEecCCEEEchhhccc
Confidence 999999999999999999999999999999999999999999999876654 4666777888888776
Q ss_pred CCCCCCCcccchhHHHHHHhcccCCc-cCCCCCCCCCCCC--CCCCCCCchhhhccCCCcccCCCcccccHHHHHHHHHH
Q 044814 236 FDHSSLPDVYTHFRKSIEAKCTVRGC-IRIPSSFGPPPSV--VDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNE 312 (577)
Q Consensus 236 ~~~~~~p~~ft~F~k~~~~~~~~~~~-~~~P~~~~~~~~~--~~~~~~p~l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~ 312 (577)
...+++|.+||+|++.+.+...+..| .+.|..+.+++.. .....+|+++++++..........|+|||++|+++|++
T Consensus 152 ~~~~~~y~vftpf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~ 231 (537)
T 3fy4_A 152 KNGGKPPLSYQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTK 231 (537)
T ss_dssp HTSSSCCSSHHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGGGSSCCCSCCCSHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHhhcCCcCCCCCccccCCCcccccccccccCCcHHhcCCCcccccccCCCCccHHHHHHHHHH
Confidence 34567999999999998754321222 1223222222111 12234677777776432111123589999999999999
Q ss_pred HhhhccchhchhhhccCCCC--CCCCCccccccccCCCCHHHHHHHHHH-hHhhhccCCchHhHhhhhhHHHHHHHHHHH
Q 044814 313 YFWKKDLLKVYKETRNEMLG--PDYSTKFSPWLASGSISPRYIYEEVKS-YERERVANDSTYWVLFELMWRDYFRFISLK 389 (577)
Q Consensus 313 Fl~~~~~l~~Y~~~Rn~~~~--~~~tS~LSPyL~~G~IS~R~v~~~~~~-~~~~~~~~~~~~~fl~eL~WREf~~~~~~~ 389 (577)
||..+..+..|++.||.|.. .++||+|||||+|||||||+|++++.+ +........++++|++||+|||||++++++
T Consensus 232 Fl~~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~ 311 (537)
T 3fy4_A 232 SISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWREFFYTTAFG 311 (537)
T ss_dssp HTCCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTTSCCCCTTTSHHHHHHHHHHHHHHHHT
T ss_pred HHhCchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99421269999999998753 467999999999999999999999987 433333455778999999999999999999
Q ss_pred cCCcccccCCCcccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHH-hcCCCchHHHHHHH
Q 044814 390 YGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR-DMGIDWRMGAEWFE 468 (577)
Q Consensus 390 ~~~~~~~~~~~~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivAsFL~k-~L~idWr~G~~~F~ 468 (577)
+|+.....+++.+..++|++|++.|++|++|+|||||||||||||++|||||||+|||||||||| +|+||||.|++||+
T Consensus 312 ~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F~ 391 (537)
T 3fy4_A 312 TPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFE 391 (537)
T ss_dssp CTTTTSSTTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHH
T ss_pred CcchhcccCChhhhcCCchhhhHHHHHHHcCCCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99765445667778899999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred HhccccCCCCCchhhhhhhCCCCCCCCCcccChhhhhhhcCCccchhhhccccccCCCccccCCCC--------------
Q 044814 469 TCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPG-------------- 534 (577)
Q Consensus 469 ~~LiD~D~a~n~g~Wqw~ag~g~d~~~~RifNP~~q~~kfDp~G~yIr~wvPEL~~lp~~~ih~P~-------------- 534 (577)
++|||||+|+|+|||||+||+|+|++|||||||++|++||||+|+|||+|||||++||+++||+||
T Consensus 392 ~~liD~D~a~n~g~Wqw~ag~g~d~~~fRifNP~~Q~~kfDp~G~yIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~g~~~ 471 (537)
T 3fy4_A 392 RLLIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIV 471 (537)
T ss_dssp HHCTTCCHHHHHHHHHHHTTSSSCCCTTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTTTTTCGGGSCHHHHHHHTCCB
T ss_pred HHccccccccChHhhhhhcccCCCcccccccCHHHHHHHhCCCchHHHHhCHhhcCCCHHhhCCcccCCHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred -CCCCcCcccccccccc
Q 044814 535 -GSYIEQIVSLKHGNIN 550 (577)
Q Consensus 535 -~~Yp~PIV~~~~~~~~ 550 (577)
.+||.|||||++++..
T Consensus 472 g~~YP~PIVdh~~ar~~ 488 (537)
T 3fy4_A 472 GKDYPKPMVLHDSASKE 488 (537)
T ss_dssp TTTBCCCSSCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHH
Confidence 4799999999987543
No 4
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=2.4e-112 Score=930.44 Aligned_cols=445 Identities=27% Similarity=0.444 Sum_probs=385.9
Q ss_pred CeEEEEecCcccccCcHHHHHHHhCCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEEE
Q 044814 81 GVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIR 160 (577)
Q Consensus 81 ~~~L~WFRrDLRl~DN~AL~~A~~~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v~ 160 (577)
+.+|||||+|||++||+||.+|++.+.+|+||||+||.++. .+..|.+|++||++||++|+++|+++|++|+|+
T Consensus 3 ~~~l~WfrrDLRl~Dn~aL~~A~~~~~~v~~vfi~dp~~~~------~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~ 76 (484)
T 1owl_A 3 APILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQ------SADMAPARVAYLQGCLQELQQRYQQAGSRLLLL 76 (484)
T ss_dssp CCEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHT------CTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCCEEEEEEEcchhhc------CCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 46899999999999999999999745589999999998763 235799999999999999999999999999999
Q ss_pred eCChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecceeccCCCCCCCCCC
Q 044814 161 HGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSS 240 (577)
Q Consensus 161 ~G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~i~~~~~~ 240 (577)
.|++.++|++|+++++|++|++|++|++.++++|..|++.|.+.+++ ++.+++.++++++++....++
T Consensus 77 ~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~------------~~~~~~~~l~~~~~~~~~~g~ 144 (484)
T 1owl_A 77 QGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIR------------AVQLWDQLLHSPDQILSGSGN 144 (484)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCE------------EEEECCSSSSCTTTCCCTTSC
T ss_pred eCCHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcE------------EEEecCCEEEchhhhcccCCC
Confidence 99999999999999999999999999999999999999998765554 477788889999999888889
Q ss_pred CCcccchhHHHHHHhcccCCccCCCCCCCCCCCC------CC-CCCCCchhhhccCCCcccCCCcccccHHHHHHHHHHH
Q 044814 241 LPDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSV------VD-WGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEY 313 (577)
Q Consensus 241 ~p~~ft~F~k~~~~~~~~~~~~~~P~~~~~~~~~------~~-~~~~p~l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~F 313 (577)
+|.+||+|++++++... ..|++.|..+.+++.. .+ ...+|.++.+++..... . .|+|||++|+++|++|
T Consensus 145 ~~~vft~f~~~~~~~~~-~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~Ge~~A~~~L~~F 220 (484)
T 1owl_A 145 PYSVYGPFWKNWQAQPK-PTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGG--F-PVEPGETAAIARLQEF 220 (484)
T ss_dssp CCSSHHHHHHHHHHSCC-CCCCCCCCSCCCCCHHHHHHHGGGCCSSCCCTGGGTCCCCSC--C-SSCSSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhcC-CCCCCCccccccccccccccccccccCCCCCHHHcCCCcccc--C-cCCCCHHHHHHHHHHH
Confidence 99999999999987643 2334444332211100 00 11245565555543221 3 6899999999999999
Q ss_pred hhhccchhchhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhHhh---hccCCchHhHhhhhhHHHHHHHHHHHc
Q 044814 314 FWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERE---RVANDSTYWVLFELMWRDYFRFISLKY 390 (577)
Q Consensus 314 l~~~~~l~~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~---~~~~~~~~~fl~eL~WREf~~~~~~~~ 390 (577)
| ++++..|++.||.|. .++||+|||||+|||||||+|++++.+.... ....++.+.|++||+|||||+++++++
T Consensus 221 l--~~~l~~Y~~~rd~p~-~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~~~~fl~eL~WREf~~~~~~~~ 297 (484)
T 1owl_A 221 C--DRAIADYDPQRNFPA-EAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHF 297 (484)
T ss_dssp H--HTGGGGHHHHTTCTT-SCCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHhccccCCCC-ccCCcCccHhHcCCCcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHhC
Confidence 9 468999999999864 5689999999999999999999999874321 111235678999999999999999999
Q ss_pred CCcccccCCCcccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHh
Q 044814 391 GNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETC 470 (577)
Q Consensus 391 ~~~~~~~~~~~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivAsFL~k~L~idWr~G~~~F~~~ 470 (577)
|+.....+++.+..++|.+|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||.|++||+++
T Consensus 298 P~~~~~~~~~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~ 377 (484)
T 1owl_A 298 PSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQH 377 (484)
T ss_dssp GGGGGSCCSTGGGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTT
T ss_pred CccccccCChhhhcCCCcCCHHHHHHHHcCCCCChhHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCCCCcHHHHHHHHh
Confidence 98766666777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhhhhhhCCCCCCCCCcccChhhhhhhcCCccchhhhccccccCCCccccCCCCC------CCCcCcccc
Q 044814 471 LLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGG------SYIEQIVSL 544 (577)
Q Consensus 471 LiD~D~a~n~g~Wqw~ag~g~d~~~~RifNP~~q~~kfDp~G~yIr~wvPEL~~lp~~~ih~P~~------~Yp~PIV~~ 544 (577)
|||||+|||+|||||+||+|+|+++||||||++|++||||+|+|||||||||+++|+++||+||. +||.|||||
T Consensus 378 llD~d~a~n~g~wqw~ag~G~d~~pfRifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~Pw~~~~~~~~YP~PiVd~ 457 (484)
T 1owl_A 378 LVDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIERRGYPAPIVNH 457 (484)
T ss_dssp CTTCCHHHHHHHHHHTTTCSSSCCCCCCCCHHHHHHHHSTTCHHHHHHCGGGTTSCHHHHHHTCCCHHHHTTSCCCSSCH
T ss_pred cccCCcccCHHHHHHhhCcCCCCCccceeCHHHHhhhcCCCchhHHHhChhhhcCChhhcCCcccchhhhcCCCCCCCCH
Confidence 99999999999999999999999889999999999999999999999999999999999999987 899999999
Q ss_pred cccccc
Q 044814 545 KHGNIN 550 (577)
Q Consensus 545 ~~~~~~ 550 (577)
+.++.+
T Consensus 458 ~~~r~~ 463 (484)
T 1owl_A 458 NLRQKQ 463 (484)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997655
No 5
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=7.9e-112 Score=932.55 Aligned_cols=453 Identities=23% Similarity=0.356 Sum_probs=381.9
Q ss_pred CCeEEEEecCcccccCcHHHHHHHhCCC---CEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhC---
Q 044814 80 KGVAIVWFRNDLRVLDNEALLKAWDSSE---MVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNR--- 153 (577)
Q Consensus 80 ~~~~L~WFRrDLRl~DN~AL~~A~~~~~---~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~l--- 153 (577)
++.+|||||||||++||+||.+|++.+. +|+||||+||.++. . +..|++|++||++||.+|+++|+++
T Consensus 3 ~~~~lvWFRrDLRl~DN~AL~~A~~~~~~g~~vl~vfi~dp~~~~-~-----~~~~~~r~~Fl~~sL~~L~~~L~~~~~~ 76 (538)
T 3tvs_A 3 RGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAG-T-----KNVGYNRMRFLLDSLQDIDDQLQAATDG 76 (538)
T ss_dssp SCEEEEEESSCCCSSSCHHHHTTTGGGTTTCBCCEEEEECSSSSC-S-----TTCCHHHHHHHHHHHHHHHHHGGGSCSS
T ss_pred CCcEEEEeCCCcchhhhHHHHHHHHhCCCCCCEEEEEecChhhhc-c-----CCCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5689999999999999999999998766 89999999999874 2 2479999999999999999999999
Q ss_pred CCcEEEEeCChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecceeccCCC
Q 044814 154 GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD 233 (577)
Q Consensus 154 Gi~L~v~~G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~ 233 (577)
|++|+|++|+++++|++|+++++|++||+|++|++.++++|..|++.|.+.+|+ ++.+++.+++++++
T Consensus 77 G~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~------------~~~~~~~~l~~p~~ 144 (538)
T 3tvs_A 77 RGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNID------------FVEKVSHTLWDPQL 144 (538)
T ss_dssp SSCCEEEESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCC------------CCEECCSSSSCTTH
T ss_pred CCeEEEEeCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCce------------EEEecCCEEEChhh
Confidence 999999999999999999999999999999999999999999999998876554 46778888998888
Q ss_pred CCCC-CCCCCcccchhHHHHHHhcccCCccCCCCC--CCC--CCCC--CCC---CCCCchhhhccCCCccc--CCCcccc
Q 044814 234 IPFD-HSSLPDVYTHFRKSIEAKCTVRGCIRIPSS--FGP--PPSV--VDW---GSVPLIEQLELHSPKVS--KGMRFVG 301 (577)
Q Consensus 234 i~~~-~~~~p~~ft~F~k~~~~~~~~~~~~~~P~~--~~~--~~~~--~~~---~~~p~l~~l~~~~~~~~--~~~~~~g 301 (577)
+... .+.+|.+|++|++.++....+..|++.|.. +.. .|.. .+. ..+|+++++++...... ....|+|
T Consensus 145 v~~~~~~~~~~~f~~f~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~ 224 (538)
T 3tvs_A 145 VIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRG 224 (538)
T ss_dssp HHHHTTTSCCCSHHHHHHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSCCCCCSSCCCCCCCCC
T ss_pred cccCCCCCCCcchHHHHHHHHhhCCCCCCCCCccccccccccCCcccccccccccCCCCHHHcCCCcccccccccCCCCC
Confidence 7544 466889999999988654333333333321 110 1100 000 23567777776543210 1236899
Q ss_pred cHHHHHHHHHHHhhh--ccchhchhhhccCCCC-CCCCCccccccccCCCCHHHHHHHHHH-hHhhhc-------cCCch
Q 044814 302 GESAALGRVNEYFWK--KDLLKVYKETRNEMLG-PDYSTKFSPWLASGSISPRYIYEEVKS-YERERV-------ANDST 370 (577)
Q Consensus 302 Ge~~A~~rL~~Fl~~--~~~l~~Y~~~Rn~~~~-~~~tS~LSPyL~~G~IS~R~v~~~~~~-~~~~~~-------~~~~~ 370 (577)
||++|+++|++||.. ...+..|++.||.+.+ .++||+|||||+|||||||+|++++.+ +..... ...+.
T Consensus 225 Ge~~A~~~L~~Fl~~~~~~~l~~y~~~r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (538)
T 3tvs_A 225 GETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGG 304 (538)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCTTTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHTCSSSCCCCCSSSCCTTT
T ss_pred CHHHHHHHHHHHHHhhhhhhHhhhcccccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHHHhhhcccccccccccchH
Confidence 999999999999932 2358999999998764 467999999999999999999999987 322111 11345
Q ss_pred HhHhhhhhHHHHHHHHHHHcCCcccccCCCcccCCCCcc-chhHHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHH
Q 044814 371 YWVLFELMWRDYFRFISLKYGNSLFHLGGPRKLEYKWSQ-DQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIAC 449 (577)
Q Consensus 371 ~~fl~eL~WREf~~~~~~~~~~~~~~~~~~~~~~i~W~~-d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivA 449 (577)
++|++||+|||||+++++++|......+.+.+..++|.. |++.|++|++|+|||||||||||||++|||||||+|||||
T Consensus 305 ~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~aW~~G~TG~P~VDA~MrqL~~tG~mHnr~Rm~vA 384 (538)
T 3tvs_A 305 AHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVA 384 (538)
T ss_dssp TTTHHHHHHHHHHHHHHHHSSCTTSSSSCSSCCCCCCCCCCSSHHHHHHTTCSSCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhccCChhhhcCCccccCHHHHHHHHhCCCCCHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 789999999999999999999765445667778899998 8899999999999999999999999999999999999999
Q ss_pred HHHHH-hcCCCchHHHHHHHHhccccCCCCCchhhhhhhCCCCC-CC-CCcccChhhhhhhcCCccchhhhccccccCCC
Q 044814 450 SFLVR-DMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND-PR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKALP 526 (577)
Q Consensus 450 sFL~k-~L~idWr~G~~~F~~~LiD~D~a~n~g~Wqw~ag~g~d-~~-~~RifNP~~q~~kfDp~G~yIr~wvPEL~~lp 526 (577)
||||| +|+||||.|++||+++|||||+|+|+|||||+||+|+| ++ |||||||++|++||||+|+|||||||||++||
T Consensus 385 sfl~k~~L~idWr~G~~~F~~~llD~D~a~n~g~Wqw~ag~g~Dd~~pyfRifNP~~Q~~kfDp~G~YIrrwvPEL~~lp 464 (538)
T 3tvs_A 385 TFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVP 464 (538)
T ss_dssp HHHTTTTTCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHSCCCSSCCCTHHHHCSTTTHHHHSCTTCTTGGGTCGGGSSSC
T ss_pred HHHHHhhhCCCchHHHHHHHHHcccCchhhchhhhhhhhcCCCcCCCCceeeeCHHHHHHHhCCCcchHHHhChhhcCCC
Confidence 99999 99999999999999999999999999999999999994 54 79999999999999999999999999999999
Q ss_pred ccccCCCC---------------CCCCcCcccccccccc
Q 044814 527 KERRNFPG---------------GSYIEQIVSLKHGNIN 550 (577)
Q Consensus 527 ~~~ih~P~---------------~~Yp~PIV~~~~~~~~ 550 (577)
+++||+|| .+||.|||||++++.+
T Consensus 465 ~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVdh~~ar~~ 503 (538)
T 3tvs_A 465 KEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKR 503 (538)
T ss_dssp CSSCCSHHHHHTTHHHHSSCCSSSSSCCCSSCSHHHHHH
T ss_pred HHhhcCcccCCHHHHHHcCCccCCCCCCCCCCHHHHHHH
Confidence 99999993 4899999999997655
No 6
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=3.5e-111 Score=917.26 Aligned_cols=439 Identities=26% Similarity=0.440 Sum_probs=375.6
Q ss_pred eEEEEecCcccccCcHHHHHHHhC-CCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEEE
Q 044814 82 VAIVWFRNDLRVLDNEALLKAWDS-SEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIR 160 (577)
Q Consensus 82 ~~L~WFRrDLRl~DN~AL~~A~~~-~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v~ 160 (577)
.+|||||||||++||+||.+|++. ..+|+||||+||.++. . +..|.+|++||++||++|+++|+++|++|+|+
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~~v~~vfi~dp~~~~-~-----~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~ 75 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWA-T-----HNMSPRQAELINAQLNGLQIALAEKGIPLLFR 75 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHH-H-----TTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEeCCCCcccchHHHHHHHhCCCCCEEEEEEECchhhc-c-----CCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 479999999999999999999983 3499999999998773 1 24799999999999999999999999999999
Q ss_pred ----eCChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecceeccCCCCCC
Q 044814 161 ----HGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF 236 (577)
Q Consensus 161 ----~G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~i~~ 236 (577)
.|++.++|++|++++++++|++|.+|++.++++|..|++.|.+ + .++.+++.++++++++..
T Consensus 76 ~~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~--i------------~~~~~~~~~l~~~~~~~~ 141 (471)
T 1dnp_A 76 EVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN--V------------VCEGFDDSVILPPGAVMT 141 (471)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT--S------------EEEEECCSSSSCTTSSCC
T ss_pred EccCCCCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC--c------------EEEEecCCEEEchhhccc
Confidence 8999999999999999999999999999999999999998765 3 246778888999999988
Q ss_pred CCCCCCcccchhHHHHHHhcc--cCCccCCCCCCCCCCCCCCCCCCCchhhhccCCCcccCCCcccccHHHHHHHHHHHh
Q 044814 237 DHSSLPDVYTHFRKSIEAKCT--VRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYF 314 (577)
Q Consensus 237 ~~~~~p~~ft~F~k~~~~~~~--~~~~~~~P~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~Fl 314 (577)
..+++|.+||+|++++++... .+.+++.|..+.+ ++ .....+|+ +++... ......|+|||++|+++|++||
T Consensus 142 ~~g~~~~vft~f~~~~~~~l~~~~p~~~~~p~~~~~-~~-~~~~~~~~---l~~~~~-~~~~~~~~~Ge~~A~~~L~~Fl 215 (471)
T 1dnp_A 142 GNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSS-GS-IEPSPSIT---LNYPRQ-SFDTAHFPVEEKAAIAQLRQFC 215 (471)
T ss_dssp TTSCCCSSHHHHHHHHHHHHHTCCCCCCCCCCCCTT-CC-CCCCCCCC---CCSCCC-CCCTTTSCCSHHHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHhccccCCCCCCCccccCc-cc-ccCCCCcc---cCCCcc-ccccccCCCCHHHHHHHHHHHH
Confidence 888999999999999987532 1222333332211 11 00111222 333221 1112358999999999999999
Q ss_pred hhccchhchhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhHhhhccCCc-hHhHhhhhhHHHHHHHHHHHcCCc
Q 044814 315 WKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDS-TYWVLFELMWRDYFRFISLKYGNS 393 (577)
Q Consensus 315 ~~~~~l~~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~-~~~fl~eL~WREf~~~~~~~~~~~ 393 (577)
++++..|++.||.|. .++||+|||||+|||||||+|++++.+.... ....+ .+.|++||+|||||+++++++|+.
T Consensus 216 --~~~l~~Y~~~rd~p~-~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~-~~~~~~~~~fl~eL~WREf~~~~~~~~P~~ 291 (471)
T 1dnp_A 216 --QNGAGEYEQQRDFPA-VEGTSRLSASLATGGLSPRQCLHRLLAEQPQ-ALDGGAGSVWLNELIWREFYRHLITYHPSL 291 (471)
T ss_dssp --HTHHHHHHHHTTCTT-SCCSCCCHHHHHHTSSCHHHHHHHHHHHCGG-GGGTSTTHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred --HHHHHHhhhccCCcC-ccCCCCCCHhHcCCCcCHHHHHHHHHHHhcc-ccccccHHHHHHHHHHHHHHHHHHHhCCch
Confidence 468999999999864 4679999999999999999999999874322 11235 677999999999999999999986
Q ss_pred ccc-cCCCcccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhcc
Q 044814 394 LFH-LGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLL 472 (577)
Q Consensus 394 ~~~-~~~~~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivAsFL~k~L~idWr~G~~~F~~~Li 472 (577)
... .+++.+..++|++|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||.|++||+++||
T Consensus 292 ~~~~~~~~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~RMivAsFL~k~L~idWr~g~~~F~~~ll 371 (471)
T 1dnp_A 292 CKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLI 371 (471)
T ss_dssp GGTCCSSGGGGGSCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHTTCT
T ss_pred hccCCcchhhhcCCCcCCHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCchHHHHHHHHhcc
Confidence 544 5566677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhhhhhhCCCCCCC-CCcccChhhhhhhcCCccchhhhccccccCCCccccCCCCC---------CCCcCcc
Q 044814 473 DYDPCSNYGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGG---------SYIEQIV 542 (577)
Q Consensus 473 D~D~a~n~g~Wqw~ag~g~d~~-~~RifNP~~q~~kfDp~G~yIr~wvPEL~~lp~~~ih~P~~---------~Yp~PIV 542 (577)
|||+|||+|||||+||+|+|++ |||||||++|++||||+|+|||||||||+++|+++||+||. +||.|||
T Consensus 372 D~d~a~n~g~wqw~ag~G~d~~py~RifNp~~q~~kfDp~G~YIrrwvPeL~~~p~~~ih~Pw~~~~~~~~~~~YP~PiV 451 (471)
T 1dnp_A 372 DGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIV 451 (471)
T ss_dssp TCCHHHHHHHHHHHTTCSTTCCCTTCCCCHHHHHHHHTTTCHHHHHHCGGGTTSCTTGGGSHHHHHHTTTCCCSSCCCSS
T ss_pred CCCcccCHHHHHhhcCCCCCCCCcceecCHHHHHHhcCCCchhHHHhChhhccCChhhcCCchhhHHhcCCCCCCCCCCC
Confidence 9999999999999999999998 79999999999999999999999999999999999999964 8999999
Q ss_pred cccccccc
Q 044814 543 SLKHGNIN 550 (577)
Q Consensus 543 ~~~~~~~~ 550 (577)
||++++.+
T Consensus 452 d~~~~r~~ 459 (471)
T 1dnp_A 452 EHKEARVQ 459 (471)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99987654
No 7
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=3.8e-111 Score=931.89 Aligned_cols=448 Identities=25% Similarity=0.415 Sum_probs=384.6
Q ss_pred CeEEEEecCcccccCcHHHHHHHhCCCC------EEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCC
Q 044814 81 GVAIVWFRNDLRVLDNEALLKAWDSSEM------VLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRG 154 (577)
Q Consensus 81 ~~~L~WFRrDLRl~DN~AL~~A~~~~~~------vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lG 154 (577)
..+|||||+|||++||+||.+|++.+.+ |+||||+||.++. . ...|.+|++||++||++|+++|+++|
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~-~-----~~~~~~r~~Fl~~sL~~L~~~L~~~G 102 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILD-W-----MQVGANRWRFLQQTLEDLDNQLRKLN 102 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGG-C-----TTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhc-c-----cCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 4569999999999999999999876544 9999999999873 2 24799999999999999999999999
Q ss_pred CcEEEEeCChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecceeccCCC-
Q 044814 155 LNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDD- 233 (577)
Q Consensus 155 i~L~v~~G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~- 233 (577)
++|+|+.|++.++|++|++++++++|+++.+|++.++++|..|++.+++.+++ +..+++.+++++++
T Consensus 103 ~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~------------~~~~~~~~l~~p~~v 170 (543)
T 2wq7_A 103 SRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVR------------VETHCSHTIYNPELV 170 (543)
T ss_dssp CCCEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCE------------EEEECCSSSSCHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCE------------EEEecCCEEECcccc
Confidence 99999999999999999999999999999999999999999999998776554 46677778888777
Q ss_pred CCCCCCCCCcccchhHHHHHHhcccCCccCCCCCCCCC--CCC-------CCCCCCCchhhhccCCCcccCCCcccccHH
Q 044814 234 IPFDHSSLPDVYTHFRKSIEAKCTVRGCIRIPSSFGPP--PSV-------VDWGSVPLIEQLELHSPKVSKGMRFVGGES 304 (577)
Q Consensus 234 i~~~~~~~p~~ft~F~k~~~~~~~~~~~~~~P~~~~~~--~~~-------~~~~~~p~l~~l~~~~~~~~~~~~~~gGe~ 304 (577)
+++..+.+|.+||+|++.+++..... |++.|..+... |.. +....+|.+++++++.... ....|+|||+
T Consensus 171 ~~~~~g~~~~vft~F~~~~~~~~~~~-p~~~p~~~~~~~~p~~~~~~~~~~~~~~~p~l~~l~~~~~~~-~~~~~~~Ge~ 248 (543)
T 2wq7_A 171 IAKNLGKAPITYQKFLGIVEQLKVPK-VLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEEL-GPNKFPGGET 248 (543)
T ss_dssp HHHTTTSCCCSHHHHHHHHTTSCCCC-CCCCCCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCSCGGGC-CCCCSCCSHH
T ss_pred ccccCCCCCccHHHHHHHHHHccCCC-CCCcchhccccccccccccccccccccCCCCHHHcCCCcccc-ccCCCCCCHH
Confidence 55567899999999999986532111 33333222111 100 0002356677777654311 2335899999
Q ss_pred HHHHHHHHHhhhccc--hhchhhhccCCCC-CCCCCccccccccCCCCHHHHHHHHHH-hHhhhccCCchHhHhhhhhHH
Q 044814 305 AALGRVNEYFWKKDL--LKVYKETRNEMLG-PDYSTKFSPWLASGSISPRYIYEEVKS-YERERVANDSTYWVLFELMWR 380 (577)
Q Consensus 305 ~A~~rL~~Fl~~~~~--l~~Y~~~Rn~~~~-~~~tS~LSPyL~~G~IS~R~v~~~~~~-~~~~~~~~~~~~~fl~eL~WR 380 (577)
+|+++|++|| +++ |..|++.||.|.. .++||+|||||+|||||||+|++++.+ +++.....++.++|++||+||
T Consensus 249 ~A~~~L~~Fl--~~~~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~f~~eL~WR 326 (543)
T 2wq7_A 249 EALRRMEESL--KDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWR 326 (543)
T ss_dssp HHHHHHHHHH--TCHHHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHHCSSCCCTTTSHHHHHHHH
T ss_pred HHHHHHHHHH--hCChhhhhhcccccCccccccCCCCcCHhHhCCCCCHHHHHHHHHHHHhccccccccHHHHHHHHHHH
Confidence 9999999999 467 9999999999864 468999999999999999999999987 443323345778999999999
Q ss_pred HHHHHHHHHcCCcccccCCCcccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHH-hcCCC
Q 044814 381 DYFRFISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVR-DMGID 459 (577)
Q Consensus 381 Ef~~~~~~~~~~~~~~~~~~~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivAsFL~k-~L~id 459 (577)
|||+++++++|+.....+++.+..++|+.+++.|++|++|+|||||||||||||++|||||||+|||||||||| +|+||
T Consensus 327 Ef~~~~~~~~P~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vASFL~kg~L~id 406 (543)
T 2wq7_A 327 EFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWIS 406 (543)
T ss_dssp HHHHHHHHTCTTTTSSTTCTTCCCCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCCC
T ss_pred HHHHHHHHhCCccccccCChHhhcCCCccCHHHHHHHHcCCCCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhCCC
Confidence 99999999999876556677888999999999999999999999999999999999999999999999999999 99999
Q ss_pred chHHHHHHHHhccccCCCCCchhhhhhhCCCCCCCCCcccChhhhhhhcCCccchhhhccccccCCCccccCCCCC----
Q 044814 460 WRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGG---- 535 (577)
Q Consensus 460 Wr~G~~~F~~~LiD~D~a~n~g~Wqw~ag~g~d~~~~RifNP~~q~~kfDp~G~yIr~wvPEL~~lp~~~ih~P~~---- 535 (577)
||.|++||+++|||||+|||+|||||+||+|+|++|||||||++|++||||+|+|||||||||+++|+++||+||.
T Consensus 407 Wr~G~~~F~~~LiD~D~a~n~g~Wqw~aG~g~D~~~~RifNP~~q~~kfDp~g~yIr~wvPEL~~~p~~~ih~Pw~~~~~ 486 (543)
T 2wq7_A 407 WEEGQRVFEQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLV 486 (543)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCCTTCCCCTTTGGGGTCTTCHHHHHHSGGGTTSCHHHHTSGGGSCHH
T ss_pred CchHHHHHHHHhccCCcccCHHHHHHHhcCCCcCccccccCHHHHhhhcCCCchhHHHhCHHhhccccccccCcccCChH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999953
Q ss_pred -----------CCCcCcccccccccc
Q 044814 536 -----------SYIEQIVSLKHGNIN 550 (577)
Q Consensus 536 -----------~Yp~PIV~~~~~~~~ 550 (577)
+||.|||||+.++.+
T Consensus 487 ~~~~~~~~~g~~YP~PiVd~~~~r~~ 512 (543)
T 2wq7_A 487 DQRAYGCVLGTDYPHRIVKHEVVHKE 512 (543)
T ss_dssp HHHHTTCCBTTTBCCCSSCHHHHHHH
T ss_pred HHHhhcccccCCCCCCCCCHHHHHHH
Confidence 799999999986654
No 8
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=2.4e-110 Score=920.49 Aligned_cols=445 Identities=25% Similarity=0.379 Sum_probs=371.8
Q ss_pred CCCeEEEEecCcccccCcHHHHHHHhCCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEE
Q 044814 79 GKGVAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLL 158 (577)
Q Consensus 79 ~~~~~L~WFRrDLRl~DN~AL~~A~~~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~ 158 (577)
+++.+|||||+|||++||+||.+|++.+ +++||||+||.++. .+ ..+..+..||++||++|+++|+++|++|+
T Consensus 10 ~~~~~l~WfrrDLRl~DN~aL~~A~~~~-~v~pvfi~dp~~~~-~~-----~~~~~~~~fl~~sL~~L~~~L~~~G~~L~ 82 (509)
T 1u3d_A 10 SGGCSIVWFRRDLRVEDNPALAAAVRAG-PVIALFVWAPEEEG-HY-----HPGRVSRWWLKNSLAQLDSSLRSLGTCLI 82 (509)
T ss_dssp ---CEEEEESSCCCSTTCHHHHHHHHHS-CEEEEEEECGGGGT-TC-----CCCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcEEEEECCCCccchhHHHHHHHhCC-CEEEEEEECchhcc-cC-----CcchHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 3567999999999999999999999874 89999999998773 22 13566667999999999999999999999
Q ss_pred EEe-CChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecceeccCCCCCCC
Q 044814 159 IRH-GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFD 237 (577)
Q Consensus 159 v~~-G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~i~~~ 237 (577)
|++ |++.++|++|+++++|++|+++.+|++.++++|..|++.|.+.+++ ++.+++.++++++++...
T Consensus 83 v~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~------------~~~~~~~~l~~p~~v~~~ 150 (509)
T 1u3d_A 83 TKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIA------------VRSFNADLLYEPWEVTDE 150 (509)
T ss_dssp EEECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCE------------EEEECCSCSSCGGGCCCS
T ss_pred EEeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcE------------EEEECCCEEEcCCcccCC
Confidence 998 6999999999999999999999999999999999999988765554 467778888888888888
Q ss_pred CCCCCcccchhHHHHHHhc-ccCCccCCCCCCCCCCCCCCCCCCCchhhhccCCCcc---cCC--CcccccHHHHHHHHH
Q 044814 238 HSSLPDVYTHFRKSIEAKC-TVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKV---SKG--MRFVGGESAALGRVN 311 (577)
Q Consensus 238 ~~~~p~~ft~F~k~~~~~~-~~~~~~~~P~~~~~~~~~~~~~~~p~l~~l~~~~~~~---~~~--~~~~gGe~~A~~rL~ 311 (577)
.+.++.+||+|++.+++.. .++.+.+.|..+.+ +. . ..++++.+++..... ... ..|+|||++|+++|+
T Consensus 151 ~g~~~~vftpf~r~~~~~~~~~~~~~~~p~~~~~-~~---~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~ 225 (509)
T 1u3d_A 151 LGRPFSMFAAFWERCLSMPYDPESPLLPPKKIIS-GD---V-SKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALT 225 (509)
T ss_dssp SSCCCSSHHHHHHHHHTCSSCCCCCCCCCSCCCB-TT---G-GGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHhccCCCCCCCCCccccCc-cc---c-CCCChhHhCCCcccccchhhhccccCCCcHHHHHHHHH
Confidence 8899999999999987542 11212222221110 00 0 012233343322100 001 248999999999999
Q ss_pred HHhhhccchhchhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhH------hhhccCCchHhHhhhhhHHHHHHH
Q 044814 312 EYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYE------RERVANDSTYWVLFELMWRDYFRF 385 (577)
Q Consensus 312 ~Fl~~~~~l~~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~------~~~~~~~~~~~fl~eL~WREf~~~ 385 (577)
+|| ++++..|++.||.|.. ++||+|||||+|||||||+|++++.+.. ......+++++|++||+|||||++
T Consensus 226 ~Fl--~~~l~~Y~~~Rd~p~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~ 302 (509)
T 1u3d_A 226 TFI--NGPLLEYSKNRRKADS-ATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRY 302 (509)
T ss_dssp HHH--TTGGGGTTTTTTCSSS-TTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHhhhhccCCCCC-CCCCCCChhhccCCCCHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHH
Confidence 999 5689999999998755 5799999999999999999999997631 111123467889999999999999
Q ss_pred HHHHcCCcccccCCCcccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCCCchHHHH
Q 044814 386 ISLKYGNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAE 465 (577)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivAsFL~k~L~idWr~G~~ 465 (577)
+++++|+.........+..++|.+|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||.|++
T Consensus 303 ~~~~~p~~~~~~~~~~~~~lpW~~d~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~G~~ 382 (509)
T 1u3d_A 303 ISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMK 382 (509)
T ss_dssp HHHSSTTTTTSCSCCTTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred HHHhCccccccchhhhhccCCCcCChHHHHHHHcCCCCCHhHHHHHHHHHHhCCccHHHHHHHHHHHHHccCCCchHHHH
Confidence 99999975444444456778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCchhhhhhhCCCCCCC-CCcccChhhhhhhcCCccchhhhccccccCCCccccCCCCC---------
Q 044814 466 WFETCLLDYDPCSNYGNWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGG--------- 535 (577)
Q Consensus 466 ~F~~~LiD~D~a~n~g~Wqw~ag~g~d~~-~~RifNP~~q~~kfDp~G~yIr~wvPEL~~lp~~~ih~P~~--------- 535 (577)
||+++|||||+|||+|||||+||+|+|++ |||||||++|++||||+|+|||||||||+++|+++||+||.
T Consensus 383 ~F~~~liD~D~a~n~g~wqw~ag~g~d~~py~RifNP~~Q~~kfDp~G~yIrrwvPEL~~~p~~~ih~Pw~~~~~~~~~~ 462 (509)
T 1u3d_A 383 YFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAA 462 (509)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHHHHTCTTTSCHHHHHHH
T ss_pred HHHHHhccCCcccchHHHHHHhcCCCCCCccccccCHHHHHHhcCCCchhHHHhCHHhhccccccccCcccCChHHHHHh
Confidence 99999999999999999999999999987 79999999999999999999999999999999999999953
Q ss_pred ------CCCcCcccccccccc
Q 044814 536 ------SYIEQIVSLKHGNIN 550 (577)
Q Consensus 536 ------~Yp~PIV~~~~~~~~ 550 (577)
+||.|||||+.++.+
T Consensus 463 ~~~~g~~YP~PiVd~~~~r~~ 483 (509)
T 1u3d_A 463 GIELGSNYPLPIVGLDEAKAR 483 (509)
T ss_dssp TCCBTTTBCCCSSCHHHHHHH
T ss_pred ccccCCCCCCCCCCHHHHHHH
Confidence 799999999997665
No 9
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=8e-110 Score=897.46 Aligned_cols=412 Identities=25% Similarity=0.381 Sum_probs=358.4
Q ss_pred EEEEecCcccccCcHHHHHHHhCCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEEEeC
Q 044814 83 AIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRHG 162 (577)
Q Consensus 83 ~L~WFRrDLRl~DN~AL~~A~~~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v~~G 162 (577)
+|||||||||++||+||.+|++.+.+|+||||+||.++.. + +..|.+|++||++||++|+++|+++|++|+|+.|
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~-~----~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g 77 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLIN-N----PYKSEFAVSFMINSLLELDDELRKKGSRLNVFFG 77 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHHSSEEEEEEEECHHHHSS-C----TTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEES
T ss_pred EEEEeCCCCccchhHHHHHHHhcCCCEEEEEEeChhhhcc-C----CcCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 7999999999999999999998888999999999988741 1 1279999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecceeccCCCCCCCCCCCC
Q 044814 163 KPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSLP 242 (577)
Q Consensus 163 ~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~i~~~~~~~p 242 (577)
++.++|++|++ +|++|+++.+|++.++++|..|++.|.+.+++ +..+++.++++++++ ++
T Consensus 78 ~~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~------------~~~~~~~~l~~~~~~------~y 137 (440)
T 2e0i_A 78 EAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIE------------FKAYEDYLLTPKSLF------HH 137 (440)
T ss_dssp CHHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCE------------EEEECCSCSSCGGGC------CC
T ss_pred CHHHHHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCce------------EEEecCCEEEccccc------Cc
Confidence 99999999999 99999999999999999999999998765554 466777788877766 47
Q ss_pred cccchhHHHHHHh-ccc-CCccCCCCCCCCCCCCCCCCCCCchhhhccCCCcccCCCcccccHHHHHHHHHHHhhhccch
Q 044814 243 DVYTHFRKSIEAK-CTV-RGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLL 320 (577)
Q Consensus 243 ~~ft~F~k~~~~~-~~~-~~~~~~P~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~Fl~~~~~l 320 (577)
.+||+|++.+.+. ... +.+++.|... +.|+ .+.++.. ....++|||++|+++|+ |+ ++++
T Consensus 138 ~vftpf~~~~~~~~~~~p~~~~~~~~~~-~~p~--------~~~~lp~------~~~~~~~Ge~~A~~~L~-Fl--~~~l 199 (440)
T 2e0i_A 138 RNFTSFYNEVSKVKVREPETMEGSFDVT-DSSM--------NVDFLLT------FKKIESPLFRGGRREGL-YL--LHRN 199 (440)
T ss_dssp SSHHHHHHHHTTSCCCCCCCCCCCBCCC-SSSB--------CGGGGGG------TCCCCCTTCCCSHHHHH-HH--HTCC
T ss_pred ccCcHHHHHHHHhcccccccCCCCcccC-CCcc--------hhhhCCc------cccCCCCCHHHHHHHHH-HH--Hhhh
Confidence 8999999998764 211 1111111111 0110 1111110 12247999999999999 99 4689
Q ss_pred hchhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhHhhhccCCchHhHhhhhhHHHHHHHHHHHcCCcccccCCC
Q 044814 321 KVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGP 400 (577)
Q Consensus 321 ~~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~fl~eL~WREf~~~~~~~~~~~~~~~~~~ 400 (577)
..| +.||.| +.++||+|||||+|||||||+|++++ .+.+.|++||+|||||+++++++|+.....+++
T Consensus 200 ~~Y-~~rd~p-~~~~tS~LSPyL~~G~lSpr~v~~~~----------~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~ 267 (440)
T 2e0i_A 200 VDF-RRRDYP-AENNNYRLSPHLKFGTISMREAYYTQ----------KGKEEFVRELYWRDFFTLLAYYNPHVFGHCYRR 267 (440)
T ss_dssp CCG-GGTTCT-TTTCCCCCHHHHHTTSSCHHHHHHHS----------TTCHHHHHHHHHHHHHHHHHHHCGGGTTSCSSG
T ss_pred hcC-CcCCCc-cccCCCCccHhHhCCCCCHHHHHHHh----------cCHHHHHHHHHHHHHHHHHHHhCCCccccccch
Confidence 999 999986 45789999999999999999999987 245678999999999999999999876666677
Q ss_pred cccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhccccCCCCCc
Q 044814 401 RKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNY 480 (577)
Q Consensus 401 ~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivAsFL~k~L~idWr~G~~~F~~~LiD~D~a~n~ 480 (577)
.+..++|.+|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||.|++||+++|||||+|||+
T Consensus 268 ~~~~l~W~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~llD~d~a~n~ 347 (440)
T 2e0i_A 268 EYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGERYFATKLVDYDPAINN 347 (440)
T ss_dssp GGGGCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHH
T ss_pred hhhcCCcccchHHHHHHHhCCCCCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHcccCCccccH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCCCcccChhhhhhhcCCccchhhhccccccCCCccccCCCCC----CCCcCcccccccccc
Q 044814 481 GNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGG----SYIEQIVSLKHGNIN 550 (577)
Q Consensus 481 g~Wqw~ag~g~d~~~~RifNP~~q~~kfDp~G~yIr~wvPEL~~lp~~~ih~P~~----~Yp~PIV~~~~~~~~ 550 (577)
|||||+||+|+|+ |||||||++|++||||+|+|||||||||+++|+++||+||. +||.|||||++++.+
T Consensus 348 g~wqw~aG~g~d~-~~RifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~pw~~~~~~YP~PiVd~~~~r~~ 420 (440)
T 2e0i_A 348 GNWQWIASTGVDY-MFRVFNPWKQQEKFDPEAKFIKEWVEELKDVPPSIIHSIYKTKVPGYPSPIVNWLERVNY 420 (440)
T ss_dssp HHHHHHTTSSSCC-SCCCCCHHHHHHHHCTTCHHHHHHCGGGGGSCHHHHTTTTTSCCTTSCCCSSCHHHHHHH
T ss_pred HHHHHHhCcCCCC-CCCccCHHHHHHHhCCCcHhHHHhCHHhhccCcccccCchhhcCCCCCCCCCCHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999975 899999999997655
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=1.8e-105 Score=861.03 Aligned_cols=406 Identities=29% Similarity=0.460 Sum_probs=352.4
Q ss_pred eEEEEecCcccccCcHHHHHHHhCCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 044814 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRH 161 (577)
Q Consensus 82 ~~L~WFRrDLRl~DN~AL~~A~~~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v~~ 161 (577)
.+|+|||+|||++||+||.+|++.+ +|+||||+||.++. . |.+|++||++||++|+++|+++|++|+|+.
T Consensus 3 ~~l~WfrrDlRl~Dn~aL~~A~~~~-~v~~vfi~d~~~~~--------~-~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~ 72 (420)
T 2j07_A 3 PLLVWHRGDLRLHDHPALLEALARG-PVVGLVVLDPNNLK--------T-TPRRRAWFLENVRALREAYRARGGALWVLE 72 (420)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHTTS-CEEEEEEECHHHHS--------S-CHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEeCCCCCccccHHHHHHHhCC-CEEEEEEECCcccc--------C-CHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5899999999999999999999776 99999999998762 4 899999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecceeccCCCCCCCCCCC
Q 044814 162 GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPFDHSSL 241 (577)
Q Consensus 162 G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~i~~~~~~~ 241 (577)
|++.++|++|++++++++|+++++|++.++++|..|++.+ ++ .+..+++..++++++ +.+
T Consensus 73 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i------------~~~~~~~~~l~~~~~-----~~~ 132 (420)
T 2j07_A 73 GLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL---PV------------PLHLLPAPHLLPPDL-----PRA 132 (420)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SS------------CEEEECCCCSSCTTC-----SSC
T ss_pred CCHHHHHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc---CC------------eEEEeCCCEEEccCC-----CCc
Confidence 9999999999999999999999999999999999998887 33 246677777877665 788
Q ss_pred CcccchhHHHHHHhcccCCccCCCCCCCCCCCCCCCCCCCchhhhccCCCcccCCCcccccHHHHHHHHHHHhhhccchh
Q 044814 242 PDVYTHFRKSIEAKCTVRGCIRIPSSFGPPPSVVDWGSVPLIEQLELHSPKVSKGMRFVGGESAALGRVNEYFWKKDLLK 321 (577)
Q Consensus 242 p~~ft~F~k~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~gGe~~A~~rL~~Fl~~~~~l~ 321 (577)
|.+||+|+|.++ . ...|++.|... +.| .+...+|. ... ....|+|||++|+++|++|| ++++.
T Consensus 133 ~~~~t~f~k~~~-~--~~~p~~~p~~~-~~p--~~~~~l~~--------~~~-~~~~~~~Ge~~A~~~L~~Fl--~~~l~ 195 (420)
T 2j07_A 133 YRVYTPFSRLYR-G--AAPPLPPPEAL-PKG--PEEGEIPR--------EDP-GLPLPEPGEEAALAGLRAFL--EAKLP 195 (420)
T ss_dssp CSSHHHHHTTCC-C--CCCCCCCCSSC-CCC--CCCCCCCC--------CCC-SSCCCCCSHHHHHHHHHHHH--HHTGG
T ss_pred cccccHHHHHHh-h--ccCCCCCcccc-CCC--CccccCCC--------ccc-ccccCCCcHHHHHHHHHHHH--HHHHh
Confidence 999999999875 2 22333333221 111 00001111 111 12358999999999999999 46899
Q ss_pred chhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhHhhhccCCchHhHhhhhhHHHHHHHHHHHcCCcccccCCCc
Q 044814 322 VYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWRDYFRFISLKYGNSLFHLGGPR 401 (577)
Q Consensus 322 ~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~fl~eL~WREf~~~~~~~~~~~~~~~~~~~ 401 (577)
+|++.||.|.. ++||+|||||+||+||||+|++++.+.. .++.+.|++||+|||||+++++++|+......++.
T Consensus 196 ~Y~~~rd~p~~-~~tS~LSpyL~~G~lSpr~v~~~~~~~~-----~~~~~~f~~eL~WREf~~~~~~~~p~~~~~~~~~~ 269 (420)
T 2j07_A 196 RYAEERDRLDG-EGGSRLSPYFALGVLSPRLAAWEAERRG-----GEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPR 269 (420)
T ss_dssp GHHHHTTCTTC-TTSCCCHHHHHTTSSCHHHHHHHHHHHC-----SHHHHHHHHHHHHHHHHHHHHHHCGGGGTSCSSGG
T ss_pred hhhhccCCCCc-cCCCCcchhhcCCccCHHHHHHHHHHHh-----ccCHHHHHHHHHHHHHHHHHHHhCCcccccccchh
Confidence 99999998754 6899999999999999999999997632 23567799999999999999999997655555666
Q ss_pred ccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhccccCCCCCch
Q 044814 402 KLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYG 481 (577)
Q Consensus 402 ~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivAsFL~k~L~idWr~G~~~F~~~LiD~D~a~n~g 481 (577)
++.++|.+|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||.|++||+++|||||+|||+|
T Consensus 270 ~~~l~w~~d~~~~~~w~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~~F~~~llD~d~a~n~g 349 (420)
T 2j07_A 270 FQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQ 349 (420)
T ss_dssp GTTCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHH
T ss_pred hhcCCcccCHHHHHHHHcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhhcCCccccHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCCCCC-CCcccChhhhhhhcCCccchhhhccccccCCCccccCCCCCCCCcCcccccccccc
Q 044814 482 NWTYGAGVGNDPR-EDRYFSIPKQAQNYDREGEYVAYWLPQLKALPKERRNFPGGSYIEQIVSLKHGNIN 550 (577)
Q Consensus 482 ~Wqw~ag~g~d~~-~~RifNP~~q~~kfDp~G~yIr~wvPEL~~lp~~~ih~P~~~Yp~PIV~~~~~~~~ 550 (577)
||||+||+|+|++ |||||||++|++||||+|+|||||||||+++| ||.|||||+.++.+
T Consensus 350 ~wqw~aG~g~d~~pyfR~fNp~~q~~kfDp~g~yir~w~pel~~~p----------YP~Pivd~~~~r~~ 409 (420)
T 2j07_A 350 GWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYA----------PKDPVVDLEEARRR 409 (420)
T ss_dssp HHHHHTTSSGGGCCTTCCCCHHHHHHHHSTTSHHHHHHCTTCSSSS----------CSSCSSCHHHHHHH
T ss_pred HHHHHHccCCCCCCCceeeCHHHHHHHhCCCchhHHHhChhhcCCC----------CCCCccCHHHHHHH
Confidence 9999999999988 78999999999999999999999999999998 99999999987654
No 11
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=1.8e-89 Score=749.05 Aligned_cols=417 Identities=21% Similarity=0.221 Sum_probs=319.7
Q ss_pred CCCCeEEEEecCcccccCcHHHHHHHh----CCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhC
Q 044814 78 NGKGVAIVWFRNDLRVLDNEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNR 153 (577)
Q Consensus 78 ~~~~~~L~WFRrDLRl~DN~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~l 153 (577)
.+++.+|||||||||++||+||.+|++ .+.+|+||||+||.++. +..|++|++||++||++|+++|+++
T Consensus 35 ~~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~-------~~~~~~r~~FL~~sL~dL~~~L~~l 107 (506)
T 3umv_A 35 KPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFL-------LSARRRQLGFLLRGLRRLAADAAAR 107 (506)
T ss_dssp CTTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCG-------GGCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhc-------cCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 346789999999999999999999986 36799999999998652 1468999999999999999999999
Q ss_pred CCcEEEEeCChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhh--hccccccCCCcccCCCceeEeecceeccC
Q 044814 154 GLNLLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQ--QVVLSSQSNDKSTNHPQLKLIWGTTMYHL 231 (577)
Q Consensus 154 Gi~L~v~~G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~--~~~v~~~~~g~~~~~~~~~~~w~~~l~~~ 231 (577)
|++|+|++|+++++ ++|+++++|++||++.++...++++|..|++.|+ +.+|+ ++.+++.+++++
T Consensus 108 G~~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~------------~~~~~~~~l~~p 174 (506)
T 3umv_A 108 HLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVA------------VHQVDAHNVVPV 174 (506)
T ss_dssp TCCEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSE------------EEEECCSCSSCH
T ss_pred CCceEEEecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeE------------EEEeCCcEEECc
Confidence 99999999999999 9999999999999998887777788999998875 33343 567777888877
Q ss_pred CCCCCCCCCCCcccchhHHHHHHhcc-cCCccCC-CCCCCCCCCCC-CCCCCCchhh-h-ccCCCcccCCCcccccHHHH
Q 044814 232 DDIPFDHSSLPDVYTHFRKSIEAKCT-VRGCIRI-PSSFGPPPSVV-DWGSVPLIEQ-L-ELHSPKVSKGMRFVGGESAA 306 (577)
Q Consensus 232 ~~i~~~~~~~p~~ft~F~k~~~~~~~-~~~~~~~-P~~~~~~~~~~-~~~~~p~l~~-l-~~~~~~~~~~~~~~gGe~~A 306 (577)
+.+... ..+.++|.+.+ +.+... ...+.+. |.. .+.+... .....+.+.+ + +++.. ......++|||++|
T Consensus 175 ~~v~~~--~~~~~~t~~~~-~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~Ge~~A 249 (506)
T 3umv_A 175 WTASAK--MEYSAKTFRGK-VSKVMDEYLVEFPELPAV-VPWDREQPEGVDWDALIARVCSEAEN-VPEIDWCEPGEEAA 249 (506)
T ss_dssp HHHCSS--CCSSHHHHHHH-HHTTHHHHSCCCCCCCCC-CCCCSCCCCCCCHHHHHHHHHHTSCC-CCCCCSSCCSHHHH
T ss_pred ccccCC--CCCCccCHHHH-HHHhccccccCCCCCCCc-cccccccccccChhhhhhhhcccccc-ccccCCCCCCHHHH
Confidence 666443 33556665444 332211 1111111 100 0000000 0001122211 1 22211 11122479999999
Q ss_pred HHHH----HHHhhhccchhchhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhHhhhccCCchHhHhhhhhHH-H
Q 044814 307 LGRV----NEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELMWR-D 381 (577)
Q Consensus 307 ~~rL----~~Fl~~~~~l~~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~fl~eL~WR-E 381 (577)
+++| ++|| ++++..|++.||.|...++||+|||||+||+||||+|++++.++... ..+++++|++||+|| |
T Consensus 250 ~~~L~~~~~~Fl--~~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~lS~r~v~~~~~~~~~~--~~~~~~~f~~eL~WRRE 325 (506)
T 3umv_A 250 IEALLGSKDGFL--TKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHL--SPKSVDAFLEELVVRRE 325 (506)
T ss_dssp HHHHHCTTTCHH--HHTGGGHHHHTTCTTCGGGSCCCHHHHHHTSSCHHHHHHHHHHHGGG--SHHHHHHHHHHHTHHHH
T ss_pred HHHHHhhHHHHH--HhHHhhhccccCCccccCCCccCCHHHhCCCcCHHHHHHHHHHHHhh--ccccHHHHHHHHHHhHH
Confidence 9999 9999 46899999999997654679999999999999999999999874321 234678899999996 9
Q ss_pred HHHHHHHHcCCcccccCCCcccCCCCcc--------ch-h---HHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHH
Q 044814 382 YFRFISLKYGNSLFHLGGPRKLEYKWSQ--------DQ-K---LFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIAC 449 (577)
Q Consensus 382 f~~~~~~~~~~~~~~~~~~~~~~i~W~~--------d~-~---~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivA 449 (577)
||+++++++|+.. .....++|.. |. + .|++|++|+|||||||||||||++|||||||+|||||
T Consensus 326 f~~~~~~~~p~~~-----~~~~~~~w~~~~l~~~~~d~~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mHnr~Rm~~a 400 (506)
T 3umv_A 326 LADNFCYYQPQYD-----SLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWA 400 (506)
T ss_dssp HHHHHHHHCTTTT-----SGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHhCcchh-----hhhccchhhhhhhhhhcccchhhhccHHHHHcCCCCCHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 9999999998642 1123466743 22 2 4999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCchHHHH-------HHHHh-ccccCCCCCchhhhhhh-CC---CCCCC-CC---cccChhhhhhhcCCcc-
Q 044814 450 SFLVRDMGIDWRMGAE-------WFETC-LLDYDPCSNYGNWTYGA-GV---GNDPR-ED---RYFSIPKQAQNYDREG- 512 (577)
Q Consensus 450 sFL~k~L~idWr~G~~-------~F~~~-LiD~D~a~n~g~Wqw~a-g~---g~d~~-~~---RifNP~~q~~kfDp~G- 512 (577)
|+| |||+.|++ ||+++ |||||+|||||||||+| |+ |.|++ || |||||++|++||||+|
T Consensus 401 ----k~l-l~W~~g~~~~~~~a~~f~~~~llD~d~~~n~~~wqw~a~G~~~~g~~~~p~fg~iR~~np~~q~~k~Dp~gy 475 (506)
T 3umv_A 401 ----KKI-LEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAY 475 (506)
T ss_dssp ----HHH-HHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHHHH
T ss_pred ----Hhh-ccCCCCHHHHHHHHHHHhhccCcccCccccccceeEEecCCCCCCCccccccCcceeECHHHHHHHhCCCch
Confidence 677 99999999 99995 99999999999999999 65 77766 56 9999999999999999
Q ss_pred -chhhhccccccCCCccccCCC
Q 044814 513 -EYVAYWLPQLKALPKERRNFP 533 (577)
Q Consensus 513 -~yIr~wvPEL~~lp~~~ih~P 533 (577)
+|||+|||||+++|++.-+.+
T Consensus 476 i~yir~wvpel~~~~~~~~~~~ 497 (506)
T 3umv_A 476 ISYVKRLAGQSKKRNAEESPNP 497 (506)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhCHHhcCCCccccccc
Confidence 999999999999998865543
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=6e-85 Score=714.67 Aligned_cols=399 Identities=20% Similarity=0.242 Sum_probs=302.2
Q ss_pred CeEEEEecCcccccCcHHHHHHHh----CCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCc
Q 044814 81 GVAIVWFRNDLRVLDNEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLN 156 (577)
Q Consensus 81 ~~~L~WFRrDLRl~DN~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~ 156 (577)
+.+|+|||+|||++||+||.+|++ .+.+|+||||+||.++. .+.+|++||++||++|+++|+++|++
T Consensus 37 g~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~---------~~~~r~~Fl~~sL~~L~~~L~~~G~~ 107 (482)
T 2xry_A 37 GPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE---------AGIRQYEFMLKGLQELEVSLSRKKIP 107 (482)
T ss_dssp SCEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG---------SCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc---------cCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 489999999999999999999985 35689999999998762 58999999999999999999999999
Q ss_pred EEEEeCChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecceeccCCCCCC
Q 044814 157 LLIRHGKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGTTMYHLDDIPF 236 (577)
Q Consensus 157 L~v~~G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~~l~~~~~i~~ 236 (577)
|+|+.|++.++|++|+++++|++|+++.+|++.+.+++..+++.+ +++ +..+.+..+++++++..
T Consensus 108 L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l---gi~------------~~~~~~~~l~~~~~~~~ 172 (482)
T 2xry_A 108 SFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI---SIP------------FFEVDAHNVVPCWEASQ 172 (482)
T ss_dssp EEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---CSC------------EEEECCSSSSCHHHHCS
T ss_pred EEEEeCCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc---CCE------------EEEEeCCEEcccccccc
Confidence 999999999999999999999999999999998888887777654 332 45566666766655544
Q ss_pred CCCCCCcccchhHHHHHHhcc-cCCccC--CCCCCC-CCCCCCCCCCCCchhhhcc--------------CCCcccCCCc
Q 044814 237 DHSSLPDVYTHFRKSIEAKCT-VRGCIR--IPSSFG-PPPSVVDWGSVPLIEQLEL--------------HSPKVSKGMR 298 (577)
Q Consensus 237 ~~~~~p~~ft~F~k~~~~~~~-~~~~~~--~P~~~~-~~~~~~~~~~~p~l~~l~~--------------~~~~~~~~~~ 298 (577)
.. .+.+||. ++++.+... ...+.+ .|.... ..|....+..+ ++.++. +.........
T Consensus 173 ~~--~~~v~tf-~~~~~~~~~~~~~~~p~~~p~~~~~~lp~~~~~~~~--~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~ 247 (482)
T 2xry_A 173 KH--EYAAHTF-RPKLYALLPEFLEEFPELEPNSVTPELSAGAGMVET--LSDVLETGVKALLPERALLKNKDPLFEPWH 247 (482)
T ss_dssp SC--CSSHHHH-HHHHHHHHHHHCCCCCCCCCCSSCCC---------C--HHHHHHHHHHHHGGGCCBCTTSCBCCCTTS
T ss_pred CC--CCceecc-hHHHHHHHHhhccccCCCCCCCCccccCCccchhhh--hhhhcccCCCCCcchhhhccccccccccCC
Confidence 32 3788884 445654321 111111 111000 00000111110 111111 0000000115
Q ss_pred ccccHHHHHHHHHHHhhhccchhchhhhccCCCCCCCCCccccccccCCCCHHHHHHHHHHhHhhhccCCchHhHhhhhh
Q 044814 299 FVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPDYSTKFSPWLASGSISPRYIYEEVKSYERERVANDSTYWVLFELM 378 (577)
Q Consensus 299 ~~gGe~~A~~rL~~Fl~~~~~l~~Y~~~Rn~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~fl~eL~ 378 (577)
|+|||++|+++|++|| ++++..|++.||.|.. ++||+|||||+||+||||+|++++.+... ..+++++|++||+
T Consensus 248 ~~~Ge~~A~~~L~~Fl--~~~l~~Y~~~Rd~p~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~---~~~~~e~fl~ELi 321 (482)
T 2xry_A 248 FEPGEKAAKKVMESFI--ADRLDSYGALRNDPTK-NMLSNLSPYLHFGQISSQRVVLEVEKAES---NPGSKKAFLDEIL 321 (482)
T ss_dssp CCCSHHHHHHHHHHHH--HHTHHHHHHHTTCTTS-CCSCCCHHHHHTTSSCHHHHHHHHHHCCC---CTTHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHH--HHHHhhhccccCCCCc-cCCCCcCHHHhCCccCHHHHHHHHHHhhc---ccccHHHHHHHHH
Confidence 8999999999999999 4689999999998754 68999999999999999999999986321 2457889999997
Q ss_pred -HHHHHHHHHHHcCCcccccCCCcccC--CC-Cccch-h---HHHhHhcCCCCCHHHHHHHHHHHHhcccchHHHHHHHH
Q 044814 379 -WRDYFRFISLKYGNSLFHLGGPRKLE--YK-WSQDQ-K---LFESWRDGCTGYPLIDANMKELSMTGFMSNRGRQIACS 450 (577)
Q Consensus 379 -WREf~~~~~~~~~~~~~~~~~~~~~~--i~-W~~d~-~---~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr~RmivAs 450 (577)
|||||+++++++|+.......+.+.. +. |..|+ + .+++|++|+|||||||||||||++|||||||+|||||+
T Consensus 322 ~WREf~~~~~~~~P~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~~G~TG~P~VDAaMrqL~~tG~mHnr~RM~vak 401 (482)
T 2xry_A 322 IWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYWAK 401 (482)
T ss_dssp HHHHHHHHHHHHCTTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccccccchHHHhhhhhhcccCchhhhHHHHHHHhCCcCCHHHHHHHHHHHHhCccccHHHHHHHc
Confidence 99999999999986431111110000 01 22332 2 59999999999999999999999999999999999985
Q ss_pred HHHHhcCCCc-hHHHHHHHHh-------ccccCCCCCchhhhhhhCCCCCC----C-CC---cccChhhhhhhcCCccch
Q 044814 451 FLVRDMGIDW-RMGAEWFETC-------LLDYDPCSNYGNWTYGAGVGNDP----R-ED---RYFSIPKQAQNYDREGEY 514 (577)
Q Consensus 451 FL~k~L~idW-r~G~~~F~~~-------LiD~D~a~n~g~Wqw~ag~g~d~----~-~~---RifNP~~q~~kfDp~G~y 514 (577)
+| ||| +.|++||+++ |||||+|||+|||||+||+++|. + || |||||++|++||||+| |
T Consensus 402 ----~L-idW~~~ge~~f~~~l~Lnd~y~iD~d~ann~ggwqw~agG~~~~~~~~~p~fg~~R~fnp~~q~~kfD~~~-y 475 (482)
T 2xry_A 402 ----KI-LEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKL-Y 475 (482)
T ss_dssp ----HH-HHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHHH-H
T ss_pred ----cc-CCCCchHHHHHHHHHHhcCceeccCCCccchhHhhhhhcCCCCCCcccccccccceeechhHhhhhcCHHH-H
Confidence 45 999 8999999998 59999999999999999944443 2 56 9999999999999999 9
Q ss_pred hhhccc
Q 044814 515 VAYWLP 520 (577)
Q Consensus 515 Ir~wvP 520 (577)
||+|||
T Consensus 476 ir~w~~ 481 (482)
T 2xry_A 476 IEKYSA 481 (482)
T ss_dssp HHHTC-
T ss_pred HHHHhc
Confidence 999995
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=9e-66 Score=555.07 Aligned_cols=411 Identities=12% Similarity=0.146 Sum_probs=306.5
Q ss_pred eEEEEecCcccccCcHHHHHHHhCCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 044814 82 VAIVWFRNDLRVLDNEALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRH 161 (577)
Q Consensus 82 ~~L~WFRrDLRl~DN~AL~~A~~~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v~~ 161 (577)
.++.|.-.|+-..++++|..+ . ....+|++++..... . +.+.+..|+.|++.||++|+++|+++|.+|++++
T Consensus 16 ~~~~~ilgdQL~~~~~~~~~~-~--~~~~~~~~~E~~~~~-~----~~~~h~~Ki~~l~saMr~fa~~L~~~G~~v~y~~ 87 (522)
T 3zxs_A 16 TRLILVLGDQLSDDLPALRAA-D--PAADLVVMAEVMEEG-T----YVPHHPQKIALILAAMRKFARRLQERGFRVAYSR 87 (522)
T ss_dssp CCEEECCTTCCCTTCHHHHTC-C--TTTCEEEEECCHHHH-H----SSCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred heeEEeecccCCCccchhhhc-C--CCCCEEEEEEechHh-c----cCCcHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 468999999999999999643 1 122366677665442 1 1256899999999999999999999999999988
Q ss_pred -------CChhhHHHHHHHHhCCCEEEEecccChhhHHHHHHHHHHhhhccccccCCCcccCCCceeEeecc-eeccCCC
Q 044814 162 -------GKPEEIIPSLAKSFGAHAVYAQKETCSEELNVERLVRKNLQQVVLSSQSNDKSTNHPQLKLIWGT-TMYHLDD 233 (577)
Q Consensus 162 -------G~~~evL~~L~~~~~a~~V~~~~e~~~~e~~~e~~v~~~l~~~~v~~~~~g~~~~~~~~~~~w~~-~l~~~~~ 233 (577)
|++.++|.++++++++..|+++ ++.++++++.+++. +++ +..+++. .+..+++
T Consensus 88 ~~~~~~~g~~~~~L~~l~~~~~~~~v~~~---~P~e~r~~~~l~~~----gi~------------v~~~~~~~fL~~~~e 148 (522)
T 3zxs_A 88 LDDPDTGPSIGAELLRRAAETGAREAVAT---RPGDWRLIEALEAM----PLP------------VRFLPDDRFLCPADE 148 (522)
T ss_dssp TTCTTCCSSHHHHHHHHHHHHTCCCEEEE---CCSCHHHHHHHHHS----SSC------------EEEECCCCSSSCHHH
T ss_pred ccCccccCCHHHHHHHHHHHcCCCEEEEe---CcchHHHHHHHHHc----CCc------------EEEeCCCCcccCHHH
Confidence 8999999999999999999999 45677788877743 222 3445554 4555556
Q ss_pred CCC--CCCCCCcccchhHHHHHHhcccC----Ccc------------CCCCCCCCCC------CCCCCCCCCchhhhccC
Q 044814 234 IPF--DHSSLPDVYTHFRKSIEAKCTVR----GCI------------RIPSSFGPPP------SVVDWGSVPLIEQLELH 289 (577)
Q Consensus 234 i~~--~~~~~p~~ft~F~k~~~~~~~~~----~~~------------~~P~~~~~~~------~~~~~~~~p~l~~l~~~ 289 (577)
+.. ..++++.+ ++||+.++++..+. .|. +.|..+.+++ +.+....++.+++...+
T Consensus 149 ~~~~~~~~k~~~m-e~FYR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~~~~p~~~~~~~d~~~~~v~~~v~~~~~~ 227 (522)
T 3zxs_A 149 FARWTEGRKQLRM-EWFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDLLRPRPLRFEPDAEVRAVLDLVEARFPR 227 (522)
T ss_dssp HHHHHTTCSSCCH-HHHHHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCCTTCCCCCCCCCCHHHHHHHHHHHHHCTT
T ss_pred HHHhhcCCCCeEe-eHHHHHHHHHhCcCCCCCCCCCCccCccccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHhccC
Confidence 543 45566655 79999998663321 111 2222221111 00000001122222112
Q ss_pred CCcccCCCcccccHHHHHHHHHHHhhhccchhchhhhccCCCCCC---CCCccccccccCCCCHHHHHHHHHH-hHhhhc
Q 044814 290 SPKVSKGMRFVGGESAALGRVNEYFWKKDLLKVYKETRNEMLGPD---YSTKFSPWLASGSISPRYIYEEVKS-YERERV 365 (577)
Q Consensus 290 ~~~~~~~~~~~gGe~~A~~rL~~Fl~~~~~l~~Y~~~Rn~~~~~~---~tS~LSPyL~~G~IS~R~v~~~~~~-~~~~~~ 365 (577)
..+......|++||.+|+++|++|| ++++..|++.||.|...+ +||+|||||++|+||||+|++++.+ ++....
T Consensus 228 ~~G~~~~~~~~~ge~~A~~~L~~Fl--~~rl~~Y~~~rD~~~~~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~~~~~~ 305 (522)
T 3zxs_A 228 HFGRLRPFHWATDRAEALRALDHFI--RESLPRFGDEQDAMLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGRA 305 (522)
T ss_dssp SSSCCCSCCCCCSHHHHHHHHHHHH--HHTGGGTTTTTTCCBTTBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHHHTTSS
T ss_pred CcCccccCCCCCCHHHHHHHHHHHH--HhhhhhhhhhccCcccCCCCCCcccccHHHhCCCcCHHHHHHHHHHHHHhcCC
Confidence 1111223569999999999999999 468999999999876543 6999999999999999999999987 433222
Q ss_pred cCCchHhHhhhh-hHHHHHHHHHHHc-CCcccccCCCcccCCCCccchhHHHhHhcCCCCCHHHHHHHHHHHHhcccchH
Q 044814 366 ANDSTYWVLFEL-MWRDYFRFISLKY-GNSLFHLGGPRKLEYKWSQDQKLFESWRDGCTGYPLIDANMKELSMTGFMSNR 443 (577)
Q Consensus 366 ~~~~~~~fl~eL-~WREf~~~~~~~~-~~~~~~~~~~~~~~i~W~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tG~mHnr 443 (577)
...+++.|++|| +|||||+++++++ |....... |..+.+..++|++|+|||||||||||||++|||||||
T Consensus 306 ~~~~~e~firellgWREF~~~l~~~~~P~~~~~n~--------~~~~~~l~~~~w~G~TG~P~VDA~MRqL~~TGwmHnr 377 (522)
T 3zxs_A 306 PLNAVEGFIRQILGWREYVRGIWTLSGPDYIRSNG--------LGHSAALPPLYWGKPTRMACLSAAVAQTRDLAYAHHI 377 (522)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHGGGGGGCCT--------TCCCBCCCGGGGTCCCSCHHHHHHHHHHHHHSCCCHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCcccccccc--------ccccccchHHHhcCCCCCHHHHHHHHHHHHHhchhHH
Confidence 234678899999 5999999999886 54322211 2222222345669999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhcccc----CCCCCchhhhhhhCCCCCCCCCcccChhhhhhhcCCccchhhhcc
Q 044814 444 GRQIACSFLVRDMGIDWRMGAEWFETCLLDY----DPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDREGEYVAYWL 519 (577)
Q Consensus 444 ~RmivAsFL~k~L~idWr~G~~~F~~~LiD~----D~a~n~g~Wqw~ag~g~d~~~~RifNP~~q~~kfDp~G~yIr~wv 519 (577)
+||||||||||+|+||||.|++||+++|||| +.+|++|+|||++|++++ +|.|...|.||+|+
T Consensus 378 ~RmmVasfl~k~L~idWr~G~~wF~~~LiD~~~Wv~~~N~~Gm~q~a~Gg~~~------------~KPY~~~~~yI~km- 444 (522)
T 3zxs_A 378 QRLMVTGNFALLAGVDPAEVHEWYLSVYIDALEWVEAPNTIGMSQFADHGLLG------------SKPYVSSGAYIDRM- 444 (522)
T ss_dssp HHHHTHHHHHHHTTBCHHHHHHHHHHHCTTCCHHHHHHHHHTTTTCCSSSTTC------------SSCCCCCHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcchhhhhhccccccchheecCCccC------------CCCCCCchHHHHHH-
Confidence 9999999999999999999999999999999 678899999999998875 56788999999998
Q ss_pred ccccCCCccccCCCCC-----------CCCcCcccccc
Q 044814 520 PQLKALPKERRNFPGG-----------SYIEQIVSLKH 546 (577)
Q Consensus 520 PEL~~lp~~~ih~P~~-----------~Yp~PIV~~~~ 546 (577)
++.+...+++|+. .|...|..|..
T Consensus 445 ---s~yc~~c~y~~~~~~g~~~cp~~~lYW~Fl~rh~~ 479 (522)
T 3zxs_A 445 ---SDYCRGCAYAVKDRTGPRACPFNLLYWHFLNRHRA 479 (522)
T ss_dssp ---CSCGGGSSSBTTCSSSTTBCHHHHHHHHHHHHTHH
T ss_pred ---hccccCCccCccccCCCccCCCccchHHHHHHHHH
Confidence 6888888998832 68888888887
No 14
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=84.20 E-value=11 Score=33.11 Aligned_cols=85 Identities=18% Similarity=-0.013 Sum_probs=59.5
Q ss_pred cc-cccCcHHHHHHHh----CCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEE----E
Q 044814 90 DL-RVLDNEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLI----R 160 (577)
Q Consensus 90 DL-Rl~DN~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v----~ 160 (577)
|. --....||..|+. .+..+..|+|+++... .......-..+.|+.+.+.+++.|+.+.+ .
T Consensus 32 D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~ 101 (155)
T 3dlo_A 32 DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR----------TKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVR 101 (155)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT----------SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc----------ccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 44 3344566766654 2568889999876431 11223344567788888888889988754 2
Q ss_pred eCChhhHHHHHHHHhCCCEEEEec
Q 044814 161 HGKPEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 161 ~G~~~evL~~L~~~~~a~~V~~~~ 184 (577)
.|++.+.|.+.+++.+++.|+.-.
T Consensus 102 ~G~~~~~I~~~a~~~~~DLIV~G~ 125 (155)
T 3dlo_A 102 GKEPPDDIVDFADEVDAIAIVIGI 125 (155)
T ss_dssp SSCHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCHHHHHHHHHHHcCCCEEEECC
Confidence 499999999999999999987653
No 15
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=83.80 E-value=7.7 Score=33.04 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=54.8
Q ss_pred CcHHHHHHHh----CCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCC-----cEEEEeCChh
Q 044814 95 DNEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGL-----NLLIRHGKPE 165 (577)
Q Consensus 95 DN~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi-----~L~v~~G~~~ 165 (577)
...||..|+. .+..+..|+|+++..................-...-+.++.|++-+++.|+ ...+..|++.
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~ 95 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPEDRMHFHVAEGSPK 95 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecChH
Confidence 4466666653 356788899988643110000000000011223445677777777777775 3557789999
Q ss_pred hHHHHHHHHhCCCEEEEecc
Q 044814 166 EIIPSLAKSFGAHAVYAQKE 185 (577)
Q Consensus 166 evL~~L~~~~~a~~V~~~~e 185 (577)
+.|.+.+++.+++.|+.-..
T Consensus 96 ~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 96 DKILALAKSLPADLVIIASH 115 (143)
T ss_dssp HHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999886653
No 16
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=79.00 E-value=12 Score=31.86 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=58.7
Q ss_pred cccccCcHHHHHHHh----CCCCEEEEEEEcCCcccccccCC-C-CCCchhhHHHHHHHHHHHHHHHHhCCC---cEEEE
Q 044814 90 DLRVLDNEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFG-F-PKTGALRAQFLIECLADLRKNLMNRGL---NLLIR 160 (577)
Q Consensus 90 DLRl~DN~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~-~-~~~~~~r~~FllesL~dL~~~L~~lGi---~L~v~ 160 (577)
|.--....||..|+. .+..+..|+|+++.... ....+ . .........-..+.|+.+.+.+.+.|+ ...+.
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~ 91 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYH-TPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAPNLKTEIS 91 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCC-CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccc-ccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEe
Confidence 333344566766654 25678889998875431 00000 0 000011223445667777888888777 45677
Q ss_pred eCChhhHHHH-HHHHhCCCEEEEec
Q 044814 161 HGKPEEIIPS-LAKSFGAHAVYAQK 184 (577)
Q Consensus 161 ~G~~~evL~~-L~~~~~a~~V~~~~ 184 (577)
.|++.+.|.+ .+++.+++.|+.-.
T Consensus 92 ~g~~~~~I~~~~a~~~~~dliV~G~ 116 (146)
T 3s3t_A 92 YGIPKHTIEDYAKQHPEIDLIVLGA 116 (146)
T ss_dssp EECHHHHHHHHHHHSTTCCEEEEES
T ss_pred cCChHHHHHHHHHhhcCCCEEEECC
Confidence 8999999999 99999999887654
No 17
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=76.80 E-value=21 Score=30.53 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=49.7
Q ss_pred cCcHHHHHHHh----CCCCEEEEEEEcCCcccccccCCC-C-CCchhhHHHHHHHHHHHHHHHHhCCC---cEEEEeCCh
Q 044814 94 LDNEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFGF-P-KTGALRAQFLIECLADLRKNLMNRGL---NLLIRHGKP 164 (577)
Q Consensus 94 ~DN~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~~-~-~~~~~r~~FllesL~dL~~~L~~lGi---~L~v~~G~~ 164 (577)
....||.+|+. .+..+..|+|+++.......+.+. + ......-...-++.+.|++-.++.|+ ...+..|++
T Consensus 18 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~ 97 (150)
T 3tnj_A 18 EDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWLVWGEP 97 (150)
T ss_dssp THHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEESCH
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEecCCH
Confidence 34566766654 256788899988643210000000 0 00111222333333333333344454 467889999
Q ss_pred hhHHHHHHHHhCCCEEEEec
Q 044814 165 EEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 165 ~evL~~L~~~~~a~~V~~~~ 184 (577)
.+.|.+.+++.+++.|+.-.
T Consensus 98 ~~~I~~~a~~~~~dliV~G~ 117 (150)
T 3tnj_A 98 REEIIRIAEQENVDLIVVGS 117 (150)
T ss_dssp HHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEec
Confidence 99999999999999987654
No 18
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=76.42 E-value=11 Score=32.80 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=56.8
Q ss_pred cCcHHHHHHHh----CCCCEEEEEEEcCCcccccccCCCC-CCchhhHHHHHHHHHHHHHHHHhCCCc-E--EEEe-CCh
Q 044814 94 LDNEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFGFP-KTGALRAQFLIECLADLRKNLMNRGLN-L--LIRH-GKP 164 (577)
Q Consensus 94 ~DN~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~~~-~~~~~r~~FllesL~dL~~~L~~lGi~-L--~v~~-G~~ 164 (577)
....||..|+. .+..+..|+|+++.... .+.+.. ........-..+.|+.+.+.+++.|+. . .+.. |++
T Consensus 29 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~ 106 (156)
T 3fg9_A 29 SSERAFRYATTLAHDYDVPLGICSVLESEDIN--IFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDV 106 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEECCCCTT--CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcc--ccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCH
Confidence 34456666653 35678999999875431 000000 000112234556677777778887873 4 5677 999
Q ss_pred hhHHHHH-HHHhCCCEEEEec
Q 044814 165 EEIIPSL-AKSFGAHAVYAQK 184 (577)
Q Consensus 165 ~evL~~L-~~~~~a~~V~~~~ 184 (577)
.+.|.+. +++.+++.|+.-.
T Consensus 107 ~~~I~~~~a~~~~~DlIV~G~ 127 (156)
T 3fg9_A 107 DDVILEQVIPEFKPDLLVTGA 127 (156)
T ss_dssp HHHHHHTHHHHHCCSEEEEET
T ss_pred HHHHHHHHHHhcCCCEEEECC
Confidence 9999998 9999999987654
No 19
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=71.85 E-value=24 Score=29.90 Aligned_cols=90 Identities=11% Similarity=0.141 Sum_probs=56.9
Q ss_pred CcHHHHHHHh----CCCCEEEEEEEcCCc-ccccccCCC----CCCchhhHHHHHHHHHHHHHHHHhCCCcE-----EEE
Q 044814 95 DNEALLKAWD----SSEMVLPVYCVDPRH-SQTTYHFGF----PKTGALRAQFLIECLADLRKNLMNRGLNL-----LIR 160 (577)
Q Consensus 95 DN~AL~~A~~----~~~~vlpvyi~dp~~-~~~~~~~~~----~~~~~~r~~FllesL~dL~~~L~~lGi~L-----~v~ 160 (577)
...||.+|+. .+..+..++++++.. +........ .........-..+.|+.+.+.+++.|++. .+.
T Consensus 15 s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~ 94 (147)
T 3hgm_A 15 AVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKVRAFVK 94 (147)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEEe
Confidence 3456666653 356788899988643 100000000 00112223445667788888888888654 577
Q ss_pred eCChhhHHHHHHHHhCCCEEEEec
Q 044814 161 HGKPEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 161 ~G~~~evL~~L~~~~~a~~V~~~~ 184 (577)
.|++.+.|.+.+++.+++.|+.-.
T Consensus 95 ~g~~~~~I~~~a~~~~~dliV~G~ 118 (147)
T 3hgm_A 95 GGRPSRTIVRFARKRECDLVVIGA 118 (147)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEECS
T ss_pred cCCHHHHHHHHHHHhCCCEEEEeC
Confidence 899999999999999999988654
No 20
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=67.12 E-value=20 Score=31.43 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=54.4
Q ss_pred cCcHHHHHHHhC----CCCEEEEEEEcCCcccccccCCCC-----------CCchhhHHHHHHHHHHHHHHHHhCCCcE-
Q 044814 94 LDNEALLKAWDS----SEMVLPVYCVDPRHSQTTYHFGFP-----------KTGALRAQFLIECLADLRKNLMNRGLNL- 157 (577)
Q Consensus 94 ~DN~AL~~A~~~----~~~vlpvyi~dp~~~~~~~~~~~~-----------~~~~~r~~FllesL~dL~~~L~~lGi~L- 157 (577)
....||.+|+.. +..+..|+|+++....... .+++ ........-..+.|+.+.+.++..|++.
T Consensus 17 ~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~ 95 (170)
T 2dum_A 17 GAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELM-DGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFRAKN 95 (170)
T ss_dssp HHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC-------------CCTTSHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc-cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcee
Confidence 344677777642 4568888888764321000 0000 0011112233455666666676667653
Q ss_pred ---EEEeCChhhHHHHHHHHhCCCEEEEecc
Q 044814 158 ---LIRHGKPEEIIPSLAKSFGAHAVYAQKE 185 (577)
Q Consensus 158 ---~v~~G~~~evL~~L~~~~~a~~V~~~~e 185 (577)
.+..|++.+.|.+.+++.+++.|+.-..
T Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~ 126 (170)
T 2dum_A 96 VRTIIRFGIPWDEIVKVAEEENVSLIILPSR 126 (170)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTCSEEEEESC
T ss_pred eeeEEecCChHHHHHHHHHHcCCCEEEECCC
Confidence 5668999999999999999999876543
No 21
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=60.30 E-value=61 Score=26.94 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=51.0
Q ss_pred cHHHHHHHh-----CCCCEEEEEEEcCCcccccccCCCCCCchhhH-HHHHHHHHHHHHHHHhCCCc--EEEEeCChhhH
Q 044814 96 NEALLKAWD-----SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRA-QFLIECLADLRKNLMNRGLN--LLIRHGKPEEI 167 (577)
Q Consensus 96 N~AL~~A~~-----~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~-~FllesL~dL~~~L~~lGi~--L~v~~G~~~ev 167 (577)
..||..|+. .+..+..++|+++................... .-..+.|+.+.+.+.+.|++ ..+..|++.+.
T Consensus 15 ~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~ 94 (138)
T 3idf_A 15 ERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGINPFVVIKEGEPVEM 94 (138)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEESCHHHH
T ss_pred HHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCChHHH
Confidence 355655543 24567888898875421000000000000001 33456677777888877877 45778999999
Q ss_pred HHHHHHHhCCCEEEEec
Q 044814 168 IPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 168 L~~L~~~~~a~~V~~~~ 184 (577)
|.+.++ +++.|+.-.
T Consensus 95 I~~~a~--~~dliV~G~ 109 (138)
T 3idf_A 95 VLEEAK--DYNLLIIGS 109 (138)
T ss_dssp HHHHHT--TCSEEEEEC
T ss_pred HHHHHh--cCCEEEEeC
Confidence 999988 888877654
No 22
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=53.56 E-value=83 Score=26.12 Aligned_cols=84 Identities=18% Similarity=0.085 Sum_probs=45.8
Q ss_pred cHHHHHHHh----CCCCEEEEEEEcCCcccccccCCC-CC-CchhhHHHHHHHHHHHHHHHHhCCC---cEEEEeCChhh
Q 044814 96 NEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFGF-PK-TGALRAQFLIECLADLRKNLMNRGL---NLLIRHGKPEE 166 (577)
Q Consensus 96 N~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~~-~~-~~~~r~~FllesL~dL~~~L~~lGi---~L~v~~G~~~e 166 (577)
..||..|+. .+..+..|+++++.... ..+. +. .......-..+.|+.+.+. .|+ ...+..|++.+
T Consensus 16 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~g~~~~ 89 (137)
T 2z08_A 16 RRAAEVAKAEAEAHGARLIVVHAYEPVPDY---LGEPFFEEALRRRLERAEGVLEEARAL---TGVPKEDALLLEGVPAE 89 (137)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEECC-----------------CHHHHHHHHHHHHHHHH---HCCCGGGEEEEESSHHH
T ss_pred HHHHHHHHHHHhhcCCEEEEEEEecCCCcc---ccccchHHHHHHHHHHHHHHHHHHHHH---cCCCccEEEEEecCHHH
Confidence 356666543 25678888888753210 0000 00 0000111122233333332 455 56778899999
Q ss_pred HHHHHHHHhCCCEEEEecc
Q 044814 167 IIPSLAKSFGAHAVYAQKE 185 (577)
Q Consensus 167 vL~~L~~~~~a~~V~~~~e 185 (577)
.|.+.+++.+++.|+.-..
T Consensus 90 ~I~~~a~~~~~dliV~G~~ 108 (137)
T 2z08_A 90 AILQAARAEKADLIVMGTR 108 (137)
T ss_dssp HHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHcCCCEEEECCC
Confidence 9999999999999886543
No 23
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=52.30 E-value=27 Score=30.68 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCc-E--EEEeCChhhHHHHHHHHhCCCEEEEecc
Q 044814 140 IECLADLRKNLMNRGLN-L--LIRHGKPEEIIPSLAKSFGAHAVYAQKE 185 (577)
Q Consensus 140 lesL~dL~~~L~~lGi~-L--~v~~G~~~evL~~L~~~~~a~~V~~~~e 185 (577)
.+.|+.+.+.+++.|++ . .+..|++.+.|.+.+++.+++.|+.-..
T Consensus 80 ~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~ 128 (163)
T 1tq8_A 80 YEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNV 128 (163)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCC
Confidence 35566777778888887 4 4678999999999999999999876643
No 24
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=48.88 E-value=32 Score=29.75 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCCCcEE--EEeCChhhHHHHHHHHhCCCEEEEec
Q 044814 139 LIECLADLRKNLMNRGLNLL--IRHGKPEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 139 llesL~dL~~~L~~lGi~L~--v~~G~~~evL~~L~~~~~a~~V~~~~ 184 (577)
..+.|+.+.+.++..|++.. +..|++.+.|.+.+++.+++.|+.-.
T Consensus 81 ~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~ 128 (162)
T 1mjh_A 81 AKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGS 128 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcC
Confidence 34556777777888888754 66799999999999999999987654
No 25
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=48.85 E-value=1.2e+02 Score=29.36 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=53.1
Q ss_pred cHHHHHHHh----C--CCCEEEEEEEcCCcccccccCCCCCCc--hhhHHHHHHHHHHHHHHHHhCCC---cEEEEeCCh
Q 044814 96 NEALLKAWD----S--SEMVLPVYCVDPRHSQTTYHFGFPKTG--ALRAQFLIECLADLRKNLMNRGL---NLLIRHGKP 164 (577)
Q Consensus 96 N~AL~~A~~----~--~~~vlpvyi~dp~~~~~~~~~~~~~~~--~~r~~FllesL~dL~~~L~~lGi---~L~v~~G~~ 164 (577)
..+|..|.. . +..+..|+|+++..... ..+.+... ...-...-++.+.|++-+++.|+ ...+..|++
T Consensus 177 ~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~ 254 (319)
T 3olq_A 177 LKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI--AIELPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKTHVKEGLP 254 (319)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC--CTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEESCH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEeecCcchhh--hccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEecCCc
Confidence 456666643 3 56788899988754310 00111111 11222333444555555566776 477889999
Q ss_pred hhHHHHHHHHhCCCEEEEec
Q 044814 165 EEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 165 ~evL~~L~~~~~a~~V~~~~ 184 (577)
.+.|.+.+++.+++.|+.-.
T Consensus 255 ~~~I~~~a~~~~~dLiV~G~ 274 (319)
T 3olq_A 255 EQVIPQVCEELNAGIVVLGI 274 (319)
T ss_dssp HHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEec
Confidence 99999999999999887554
No 26
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=48.62 E-value=5 Score=33.90 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.3
Q ss_pred hhhcCCccchhhhccccccCCC
Q 044814 505 AQNYDREGEYVAYWLPQLKALP 526 (577)
Q Consensus 505 ~~kfDp~G~yIr~wvPEL~~lp 526 (577)
..||||+|+|..++--+++.++
T Consensus 87 ~~KyDP~g~y~~ky~~~~~~~~ 108 (109)
T 2gvs_A 87 KAKYDPDGTYSKKYEDREKELH 108 (109)
T ss_dssp HHHHCTTCTTTHHHHTTTCCSC
T ss_pred HHHHCCCchHHHHHHHHHHHcc
Confidence 4699999999999988887764
No 27
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=47.77 E-value=1.1e+02 Score=29.34 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=47.7
Q ss_pred cHHHHHHHh----CCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCC---cEEEEeCChhhHH
Q 044814 96 NEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGL---NLLIRHGKPEEII 168 (577)
Q Consensus 96 N~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi---~L~v~~G~~~evL 168 (577)
..+|..|.. .+..+..|+|+++.... . ..+.. ...-...-+..+.|++-+++.|+ ...+..|++.+.|
T Consensus 155 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~---~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I 229 (290)
T 3mt0_A 155 AGIISHAYDIAGLAKATLHVISAHPSPMLS-S---ADPTF-QLSETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLI 229 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC-------------CH-HHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEecCcccc-c---cCchh-HHHHHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHH
Confidence 456666643 35678888998864321 0 00100 11111222333344444444465 5678899999999
Q ss_pred HHHHHHhCCCEEEEec
Q 044814 169 PSLAKSFGAHAVYAQK 184 (577)
Q Consensus 169 ~~L~~~~~a~~V~~~~ 184 (577)
.+.+++.+++.|+.-.
T Consensus 230 ~~~a~~~~~dLiVmG~ 245 (290)
T 3mt0_A 230 PRTAQKLDAVVTVIGT 245 (290)
T ss_dssp HHHHHHHTCSEEEEEC
T ss_pred HHHHHhcCCCEEEECC
Confidence 9999999999887653
No 28
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=47.10 E-value=23 Score=32.59 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEec
Q 044814 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 140 lesL~dL~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~~ 184 (577)
..+..++=+.|++.|+++.|.++.+...+..+++.+|+..++.+.
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~~~ 138 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATD 138 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCEEEECE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEcc
Confidence 556667777788899999999999999999999999998877653
No 29
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=38.63 E-value=99 Score=29.61 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=53.2
Q ss_pred cccccCcHHHHHHHh----CCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEE--EEeCC
Q 044814 90 DLRVLDNEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLL--IRHGK 163 (577)
Q Consensus 90 DLRl~DN~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~--v~~G~ 163 (577)
|.--....+|..|.. .+..+..|+|.++.. --+.++++.+.|++.|++.. +..|+
T Consensus 178 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------------------~~~~l~~~~~~l~~~~~~~~~~~~~g~ 238 (294)
T 3loq_A 178 DFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-------------------KTADLRVMEEVIGAEGIEVHVHIESGT 238 (294)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------------------CHHHHHHHHHHHHHTTCCEEEEEECSC
T ss_pred CCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-------------------HHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 444445566766654 245677788876531 13456777788888888743 56799
Q ss_pred hhhHHHHHHHHhCCCEEEEec
Q 044814 164 PEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 164 ~~evL~~L~~~~~a~~V~~~~ 184 (577)
+.+.|.+.+++.+++-|+.-.
T Consensus 239 ~~~~I~~~a~~~~~dLlV~G~ 259 (294)
T 3loq_A 239 PHKAILAKREEINATTIFMGS 259 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHhcCcCEEEEeC
Confidence 999999999999999887654
No 30
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=35.87 E-value=63 Score=28.29 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCcEE--EEeCChhhHHHHHHHHhCCCEEEEecc
Q 044814 140 IECLADLRKNLMNRGLNLL--IRHGKPEEIIPSLAKSFGAHAVYAQKE 185 (577)
Q Consensus 140 lesL~dL~~~L~~lGi~L~--v~~G~~~evL~~L~~~~~a~~V~~~~e 185 (577)
.+.|+.+.+.+.+.|+... +..|++.+.|.+.+++.+++.|+.-..
T Consensus 86 ~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~ 133 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSR 133 (175)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 3456666667777787754 667999999999999999999876543
No 31
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=31.32 E-value=76 Score=26.40 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCc---EEEEeCChhhHHHHHHHHhCCCEEEEecc
Q 044814 145 DLRKNLMNRGLN---LLIRHGKPEEIIPSLAKSFGAHAVYAQKE 185 (577)
Q Consensus 145 dL~~~L~~lGi~---L~v~~G~~~evL~~L~~~~~a~~V~~~~e 185 (577)
.|++-+++.|++ ..+..|++.+.|.+.+++.+++.|+.-..
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 111 (141)
T 1jmv_A 68 ALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH 111 (141)
T ss_dssp HHHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 333334455765 45778999999999999999999876544
No 32
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=31.29 E-value=1.1e+02 Score=30.78 Aligned_cols=44 Identities=18% Similarity=0.079 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEe
Q 044814 140 IECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQ 183 (577)
Q Consensus 140 lesL~dL~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~ 183 (577)
.+-+..+++-|+.+|++.++..+++.+++..|++.--+..|++.
T Consensus 129 ~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~ 172 (340)
T 1b43_A 129 EMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQ 172 (340)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECS
T ss_pred HHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEcc
Confidence 34567788888889999998889999999999887555555443
No 33
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=30.83 E-value=47 Score=29.95 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=33.4
Q ss_pred HHHHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEec
Q 044814 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 146 L~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~~ 184 (577)
+=+.|++.|+++.|.++++.+.+..+++..|+..++...
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~ 92 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQGR 92 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSC
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCc
Confidence 445667789999999999999999999999999887654
No 34
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=29.49 E-value=1.8e+02 Score=27.76 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=51.4
Q ss_pred HHHhCCCCEEEEEEEcCCcccccccCCCCC--CchhhHHHHHHHHHHHHHHHHhCCCcEEE---E-eCChhhHHHHHHHH
Q 044814 101 KAWDSSEMVLPVYCVDPRHSQTTYHFGFPK--TGALRAQFLIECLADLRKNLMNRGLNLLI---R-HGKPEEIIPSLAKS 174 (577)
Q Consensus 101 ~A~~~~~~vlpvyi~dp~~~~~~~~~~~~~--~~~~r~~FllesL~dL~~~L~~lGi~L~v---~-~G~~~evL~~L~~~ 174 (577)
.|...+..+..|+++++.... ....+... .-.....-..+.|+.+.+.+++.|++... . .|++.+.| ++++
T Consensus 45 lA~~~~a~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~ 121 (294)
T 3loq_A 45 FKKVGVEEIGVLFVINLTKLS-TVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKAS 121 (294)
T ss_dssp HHHTTCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHH
T ss_pred HHhhcCCEEEEEEEecCcccc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eecc
Confidence 333446678888888765421 00000000 00122334556778888888888988875 4 79999999 8999
Q ss_pred hCCCEEEEecc
Q 044814 175 FGAHAVYAQKE 185 (577)
Q Consensus 175 ~~a~~V~~~~e 185 (577)
.+++.|+.-..
T Consensus 122 ~~~DliV~G~~ 132 (294)
T 3loq_A 122 ENYSFIAMGSR 132 (294)
T ss_dssp TTSSEEEEECC
T ss_pred CCCCEEEEcCC
Confidence 99999887654
No 35
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=28.64 E-value=3e+02 Score=26.03 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=54.3
Q ss_pred cccccCcHHHHHHHh----CCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEE--E-eC
Q 044814 90 DLRVLDNEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLI--R-HG 162 (577)
Q Consensus 90 DLRl~DN~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v--~-~G 162 (577)
|.--....||.+|+. .+.++..+++.+|.. . .+.|+++.+.++..|++... . .|
T Consensus 15 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~------------~-------~~~l~~~~~~~~~~~~~~~~~~~~~g 75 (290)
T 3mt0_A 15 EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRD------------H-------SAALNDLAQELREEGYSVSTNQAWKD 75 (290)
T ss_dssp CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSC------------C-------HHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHH------------H-------HHHHHHHHHHHhhCCCeEEEEEEeCC
Confidence 665667788888764 355788888877521 1 13355666677778888764 3 47
Q ss_pred ChhhHHHHHHHHhCCCEEEEecc
Q 044814 163 KPEEIIPSLAKSFGAHAVYAQKE 185 (577)
Q Consensus 163 ~~~evL~~L~~~~~a~~V~~~~e 185 (577)
++.+.|.+.+++.+++.|+.-..
T Consensus 76 ~~~~~i~~~a~~~~~dliV~G~~ 98 (290)
T 3mt0_A 76 SLHQTIIAEQQAEGCGLIIKQHF 98 (290)
T ss_dssp SHHHHHHHHHHHHTCSEEEEECC
T ss_pred CHHHHHHHHHHhcCCCEEEEecc
Confidence 89999999999999999886643
No 36
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=27.85 E-value=55 Score=30.39 Aligned_cols=39 Identities=15% Similarity=0.362 Sum_probs=33.9
Q ss_pred HHHHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEec
Q 044814 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 146 L~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~~ 184 (577)
+=+.|++.|+++.|.++++.+.+..+++..|+..+|...
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~ 122 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQ 122 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhccc
Confidence 446677889999999999999999999999999888665
No 37
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=27.71 E-value=64 Score=28.64 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=31.9
Q ss_pred HHHHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEec
Q 044814 146 LRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 146 L~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~~ 184 (577)
+=+.|++.|+++.|.++++...+..+++..++. ++...
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~ 84 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP-VLHGI 84 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESC
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCC
Confidence 445667789999999999999999999999999 66554
No 38
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=26.66 E-value=60 Score=29.67 Aligned_cols=37 Identities=30% Similarity=0.581 Sum_probs=32.1
Q ss_pred HHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEec
Q 044814 148 KNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 148 ~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~~ 184 (577)
+.|++.|+++.|.++++.+.+..++++.|+..+|...
T Consensus 62 ~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~ 98 (195)
T 3n07_A 62 KALMNAGIEIAIITGRRSQIVENRMKALGISLIYQGQ 98 (195)
T ss_dssp HHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSC
T ss_pred HHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCC
Confidence 4466789999999999999999999999999887654
No 39
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=26.64 E-value=65 Score=27.81 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=32.4
Q ss_pred HHHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEec
Q 044814 147 RKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 147 ~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~~ 184 (577)
=+.|++.|+++.|.++.+...+..+++.+++..++...
T Consensus 40 l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~ 77 (164)
T 3e8m_A 40 IFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGV 77 (164)
T ss_dssp HHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSC
T ss_pred HHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeeccc
Confidence 35566789999999999999999999999999887664
No 40
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=25.82 E-value=73 Score=28.23 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=30.6
Q ss_pred HHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEe
Q 044814 148 KNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQ 183 (577)
Q Consensus 148 ~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~ 183 (577)
+.|++.|+++.+.+|.+...+..+++..++..++..
T Consensus 45 ~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~ 80 (180)
T 1k1e_A 45 KMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLG 80 (180)
T ss_dssp HHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEES
T ss_pred HHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeecC
Confidence 345667999999999999999999999999987744
No 41
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=25.26 E-value=35 Score=35.15 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCChhhHHHHHHHHhCC------CEEEEec
Q 044814 139 LIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGA------HAVYAQK 184 (577)
Q Consensus 139 llesL~dL~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a------~~V~~~~ 184 (577)
+...+.+|=+.|++.|+.++|..|.+.+.+..++++.|+ .+|+++.
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~~ 273 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGLR 273 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEEC
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEeE
Confidence 467888999999999999999999999999999998664 4566663
No 42
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=24.60 E-value=72 Score=28.79 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=32.1
Q ss_pred HHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEec
Q 044814 148 KNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 148 ~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~~ 184 (577)
+.|++.|+++.|.++++.+.+..+++..|+..++...
T Consensus 56 ~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~ 92 (191)
T 3n1u_A 56 KLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQ 92 (191)
T ss_dssp HHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeCC
Confidence 4567789999999999999999999999999877654
No 43
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=24.06 E-value=19 Score=22.05 Aligned_cols=9 Identities=67% Similarity=0.985 Sum_probs=6.9
Q ss_pred cccccccCC
Q 044814 560 TRTGRRNNF 568 (577)
Q Consensus 560 ~~~~~~~~~ 568 (577)
-||||||-.
T Consensus 10 ~RtGRRNAl 18 (26)
T 1cmk_I 10 GRTGRRNAI 18 (26)
T ss_pred Ccccccccc
Confidence 489999864
No 44
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=23.95 E-value=17 Score=30.84 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=16.7
Q ss_pred hhhcCCccchhhhccccccC
Q 044814 505 AQNYDREGEYVAYWLPQLKA 524 (577)
Q Consensus 505 ~~kfDp~G~yIr~wvPEL~~ 524 (577)
..||||+|+|..++--+++.
T Consensus 85 ~~KyDP~g~y~~~y~~~~~~ 104 (112)
T 1k19_A 85 TAKYDPTGNWRKKYEDRAKA 104 (112)
T ss_dssp HHSSTTTCSSHHHHHHHHHH
T ss_pred HHHHCCCchHHHHHHHHHHH
Confidence 46999999999999887754
No 45
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=23.24 E-value=1.4e+02 Score=25.52 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=30.3
Q ss_pred HHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEe
Q 044814 148 KNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQ 183 (577)
Q Consensus 148 ~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~ 183 (577)
+.|++.|+++.|.++.+...+..+++..++..++..
T Consensus 46 ~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~ 81 (162)
T 2p9j_A 46 KLLQKMGITLAVISGRDSAPLITRLKELGVEEIYTG 81 (162)
T ss_dssp HHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccC
Confidence 445678999999999999999999999999877654
No 46
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=23.17 E-value=1e+02 Score=29.43 Aligned_cols=74 Identities=12% Similarity=0.013 Sum_probs=40.0
Q ss_pred HHHHHHHhCCCCEEEEEEEcCCcccccccCCCCCCchhhHHHHHHHHHHHHHHHHhCCCcEEEEe--CC---hhhHHHHH
Q 044814 97 EALLKAWDSSEMVLPVYCVDPRHSQTTYHFGFPKTGALRAQFLIECLADLRKNLMNRGLNLLIRH--GK---PEEIIPSL 171 (577)
Q Consensus 97 ~AL~~A~~~~~~vlpvyi~dp~~~~~~~~~~~~~~~~~r~~FllesL~dL~~~L~~lGi~L~v~~--G~---~~evL~~L 171 (577)
-||+.|.+.+..|+.|+..-+.... +..|-...++.++..-+.+|+|+++.. |. -.+.|.++
T Consensus 19 ~al~~l~~~G~eV~~L~~~~~~~~~-------------s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~ 85 (237)
T 3rjz_A 19 YALYWAIKNRFSVKFLVTMVSENEE-------------SYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRV 85 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEECC---------------------CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEEEEcCCCCC-------------ccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHH
Confidence 4566777777777777654333211 000001112334444566799999764 32 34556667
Q ss_pred HHHhCCCEEEEe
Q 044814 172 AKSFGAHAVYAQ 183 (577)
Q Consensus 172 ~~~~~a~~V~~~ 183 (577)
+++.+++.|++-
T Consensus 86 l~~~~i~~vv~G 97 (237)
T 3rjz_A 86 LSGLKIQGIVAG 97 (237)
T ss_dssp HTTSCCSEEECC
T ss_pred HHhcCCcEEEEC
Confidence 777788887644
No 47
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=22.22 E-value=85 Score=28.05 Aligned_cols=38 Identities=11% Similarity=0.334 Sum_probs=32.0
Q ss_pred HHHHHhCCCcEEEEeCChhhHHHHHHHHhCCCEEEEec
Q 044814 147 RKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHAVYAQK 184 (577)
Q Consensus 147 ~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~V~~~~ 184 (577)
=+.|++.|+++.|.++.+...+..+++..|+..++...
T Consensus 62 l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~ 99 (188)
T 2r8e_A 62 IRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQ 99 (188)
T ss_dssp HHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeecCC
Confidence 34567789999999999999999999999999877654
No 48
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=20.72 E-value=1.5e+02 Score=25.24 Aligned_cols=42 Identities=10% Similarity=-0.079 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCChhhHHHHHHHHhCCCE
Q 044814 138 FLIECLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAHA 179 (577)
Q Consensus 138 FllesL~dL~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~~ 179 (577)
-.+..|.++.+++++.|+.++.+.-+..+.+.+++++++..-
T Consensus 53 ~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~ 94 (163)
T 3gkn_A 53 TEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAF 94 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCc
Confidence 357889999999999999999888788888999999988753
No 49
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=20.60 E-value=91 Score=30.15 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhhHHHHHHHHhCCC----EEEEec
Q 044814 142 CLADLRKNLMNRGLNLLIRHGKPEEIIPSLAKSFGAH----AVYAQK 184 (577)
Q Consensus 142 sL~dL~~~L~~lGi~L~v~~G~~~evL~~L~~~~~a~----~V~~~~ 184 (577)
+..++-+.|++.|+++++..|+....+..++++.|+. .|+++.
T Consensus 145 g~~e~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g~~~~~~~i~~n~ 191 (297)
T 4fe3_A 145 GYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNF 191 (297)
T ss_dssp THHHHHHHHHHTTCCEEEEEEEEHHHHHHHHHHTTCCCTTEEEEEEC
T ss_pred cHHHHHHHHHHcCCeEEEEeCCcHHHHHHHHHHcCCCcccceEEeee
Confidence 3456667788889999999999999999999998864 366664
No 50
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=20.37 E-value=5.5e+02 Score=24.28 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=56.7
Q ss_pred cccccCcHHHHHHHh----CCCCEEEEEEEcCCcccccccCCCCCCc-hhhH-------HHHHHHHHHHHHHHHhCCCcE
Q 044814 90 DLRVLDNEALLKAWD----SSEMVLPVYCVDPRHSQTTYHFGFPKTG-ALRA-------QFLIECLADLRKNLMNRGLNL 157 (577)
Q Consensus 90 DLRl~DN~AL~~A~~----~~~~vlpvyi~dp~~~~~~~~~~~~~~~-~~r~-------~FllesL~dL~~~L~~lGi~L 157 (577)
|.--....||.+|+. .+.++..++++++...... + ..+ ...- .-..+.|+.+.+.+...|++.
T Consensus 15 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~ 89 (319)
T 3olq_A 15 DPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMT---T--LLSPDERNAMRKGVINQKTAWIKQQARYYLEAGIQI 89 (319)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCT---T--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhc---c--ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCeE
Confidence 555556778877764 3567888888764322100 0 011 1111 112345666666776778876
Q ss_pred E--EE-eCChhhHHHHHHHHhCCCEEEEecc
Q 044814 158 L--IR-HGKPEEIIPSLAKSFGAHAVYAQKE 185 (577)
Q Consensus 158 ~--v~-~G~~~evL~~L~~~~~a~~V~~~~e 185 (577)
. +. .|++.+.|.+.+++.+++.|+.-..
T Consensus 90 ~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~ 120 (319)
T 3olq_A 90 DIKVIWHNRPYEAIIEEVITDKHDLLIKMAH 120 (319)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCSEEEEEEB
T ss_pred EEEEEecCChHHHHHHHHHhcCCCEEEEecC
Confidence 5 45 7999999999999999998876543
Done!